Euteleostomi ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Sarcopterygii ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Tetrapoda ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Amniota ANCESTRAL SPECIES 6 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 Mammalia ANCESTRAL SPECIES 6 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Theria ANCESTRAL SPECIES 5 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Eutheria ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Boreoeutheria ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Euarchontoglires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Glires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Lagomorpha ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160029 ENSGT00940000157735 ENSGT00390000007069 ENSGT00940000155963 Rabbit MODERN SPECIES 18 ENSOCUG00000025666 #7 MTX2 (ENSOCUG00000008760) #8 HOXD1 (ENSOCUG00000015582) #9 HOXD3 (ENSOCUG00000014119) #10 HOXD4 (ENSOCUG00000002413) #11 ENSOCUG00000035940 #12 HOXD9 (ENSOCUG00000023956) #13 HOXD10 (ENSOCUG00000008964) #14 HOXD11 (ENSOCUG00000013942) #15 HOXD12 (ENSOCUG00000002412) #16 HOXD13 (ENSOCUG00000029547) #17 EVX2 (ENSOCUG00000032776) #18 LNPK (ENSOCUG00000008962) #19 ATP5MC3 (ENSOCUG00000012164) #20 ATF2 (ENSOCUG00000012156) #21 CHN1 (ENSOCUG00000008134) #22 CHRNA1 (ENSOCUG00000024814) #23 ENSOCUG00000005696 #24 ENSOCUG00000036607 #25 GPR155 (ENSOCUG00000003683) #26 SCRN3 (ENSOCUG00000011499) #27 CIR1 (ENSOCUG00000029298) #28 ENSOCUG00000037146 #29 OLA1 (ENSOCUG00000003574) #30 SP3 (ENSOCUG00000026678) #31 ENSOCUG00000030823 #32 CDCA7 (ENSOCUG00000001759) #33 ENSOCUG00000030479 #34 MAP3K20 (ENSOCUG00000015053) #35 ENSOCUG00000020911 #36 RAPGEF4 (ENSOCUG00000015032) #37 Pika MODERN SPECIES 958 ATF2 (ENSOPRG00000003853) #21 CHN1 (ENSOPRG00000003821) #22 Rodentia ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Sciuridae ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Marmotini ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Marmotini_b ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Squirrel MODERN SPECIES 109 HNRNPA3 (ENSSTOG00000025125) ENSSTOG00000030884 MTX2 (ENSSTOG00000014688) #8 HOXD1 (ENSSTOG00000012230) #9 HOXD3 (ENSSTOG00000014680) #10 HOXD4 (ENSSTOG00000029055) #11 ENSSTOG00000023453 #12 HOXD9 (ENSSTOG00000026761) #13 HOXD10 (ENSSTOG00000003935) #14 HOXD12 (ENSSTOG00000004918) #16 HOXD13 (ENSSTOG00000004117) #17 EVX2 (ENSSTOG00000014512) #18 LNPK (ENSSTOG00000014498) #19 ENSSTOG00000013572 #20 ATF2 (ENSSTOG00000014079) #21 CHN1 (ENSSTOG00000004301) #22 CHRNA1 (ENSSTOG00000004281) #23 ENSSTOG00000004271 GPR155 (ENSSTOG00000001239) #26 SCRN3 (ENSSTOG00000001236) #27 CIR1 (ENSSTOG00000001233) #28 OLA1 (ENSSTOG00000015547) #30 SP3 (ENSSTOG00000023955) #31 ENSSTOG00000009026 #33 MAP3K20 (ENSSTOG00000022529) #35 RAPGEF4 (ENSSTOG00000001706) #37 PDK1 (ENSSTOG00000006473) ITGA6 (ENSSTOG00000006442) DLX2 (ENSSTOG00000019803) DLX1 (ENSSTOG00000012969) METAP1D (ENSSTOG00000012954) Arctic ground squirrel MODERN SPECIES 323 MTX2 (ENSUPAG00010020394) #8 ENSUPAG00010020400 HOXD1 (ENSUPAG00010020407) #9 HOXD3 (ENSUPAG00010020410) #10 HOXD4 (ENSUPAG00010020416) #11 HOXD8 (ENSUPAG00010020425) #12 HOXD9 (ENSUPAG00010020431) #13 HOXD10 (ENSUPAG00010020434) #14 HOXD11 (ENSUPAG00010020439) #15 HOXD12 (ENSUPAG00010020440) #16 HOXD13 (ENSUPAG00010020441) #17 EVX2 (ENSUPAG00010020442) #18 LNPK (ENSUPAG00010020452) #19 ENSUPAG00010020485 #20 ATF2 (ENSUPAG00010020491) #21 CHN1 (ENSUPAG00010020575) #22 CHRNA1 (ENSUPAG00010020641) #23 WIPF1 (ENSUPAG00010020649) Alpin marmot MODERN SPECIES 5 AGPS (ENSMMMG00000023778) NFE2L2 (ENSMMMG00000023776) MTX2 (ENSMMMG00000023772) #8 HOXD3 (ENSMMMG00000023768) #10 HOXD4 (ENSMMMG00000023767) #11 ENSMMMG00000023765 #12 HOXD9 (ENSMMMG00000023764) #13 HOXD10 (ENSMMMG00000023763) #14 ENSMMMG00000023762 #15 HOXD12 (ENSMMMG00000023760) #16 HOXD13 (ENSMMMG00000023759) #17 LNPK (ENSMMMG00000023755) #19 ENSMMMG00000023748 #20 ATF2 (ENSMMMG00000023733) #21 ENSMMMG00000023730 CHN1 (ENSMMMG00000023718) #22 CHRNA1 (ENSMMMG00000023717) #23 WIPF1 (ENSMMMG00000023716) ENSMMMG00000023714 GPR155 (ENSMMMG00000023705) #26 ENSMMMG00000023702 #27 ENSMMMG00000023700 #27 CIR1 (ENSMMMG00000023697) #28 OLA1 (ENSMMMG00000023695) #30 SP3 (ENSMMMG00000023692) #31 CDCA7 (ENSMMMG00000023690) #33 MAP3K20 (ENSMMMG00000023687) #35 RAPGEF4 (ENSMMMG00000023674) #37 PDK1 (ENSMMMG00000023665) ITGA6 (ENSMMMG00000023663) DLX2 (ENSMMMG00000023658) Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005003881 MTX2 (ENSSVLG00005003812) #8 HOXD1 (ENSSVLG00005003762) #9 HOXD4 (ENSSVLG00005003676) #11 HOXD8 (ENSSVLG00005003645) #12 HOXD9 (ENSSVLG00005003618) #13 HOXD10 (ENSSVLG00005003599) #14 HOXD11 (ENSSVLG00005003581) #15 HOXD12 (ENSSVLG00005003565) #16 HOXD13 (ENSSVLG00005003554) #17 EVX2 (ENSSVLG00005003539) #18 LNPK (ENSSVLG00005003500) #19 ENSSVLG00005003466 ENSSVLG00005003430 #20 ENSSVLG00005003279 #21 CHN1 (ENSSVLG00005003041) #22 CHRNA1 (ENSSVLG00005002856) #23 WIPF1 (ENSSVLG00005002786) GPR155 (ENSSVLG00005002750) #26 SCRN3 (ENSSVLG00005002703) #27 CIR1 (ENSSVLG00005002678) #28 SP9 (ENSSVLG00005002657) ENSSVLG00005002643 OLA1 (ENSSVLG00005002579) #30 ENSSVLG00005002549 SP3 (ENSSVLG00005002509) #31 CDCA7 (ENSSVLG00005002383) #33 ENSSVLG00005002309 ENSSVLG00005002282 RAPGEF4 (ENSSVLG00005001732) #37 PDK1 (ENSSVLG00005001413) Hystricomorpha ANCESTRAL SPECIES 20 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 22 MTX2 (ENSHGLG00000004177) #8 HOXD1 (ENSHGLG00000004072) #9 HOXD3 (ENSHGLG00000003761) #10 HOXD4 (ENSHGLG00000037842) #11 ENSHGLG00000003577 #12 HOXD10 (ENSHGLG00000033462) #14 HOXD9 (ENSHGLG00000007185) #13 HOXD11 (ENSHGLG00000034527) #15 HOXD12 (ENSHGLG00000005403) #16 HOXD13 (ENSHGLG00000050884) #17 EVX2 (ENSHGLG00000004218) #18 LNPK (ENSHGLG00000004015) #19 ENSHGLG00000040802 Atp5mc3 (ENSHGLG00000033165) #20 ENSHGLG00000018805 #21 ENSHGLG00000016114 #22 CHRNA1 (ENSHGLG00000015432) #23 ENSHGLG00000039411 ENSHGLG00000036822 GPR155 (ENSHGLG00000012529) #26 SCRN3 (ENSHGLG00000010172) #27 CIR1 (ENSHGLG00000008097) #28 SP9 (ENSHGLG00000007443) ENSHGLG00000040018 ENSHGLG00000046967 ENSHGLG00000006618 #30 SP3 (ENSHGLG00000007831) #31 ENSHGLG00000001810 ENSHGLG00000033105 ENSHGLG00000033114 CDCA7 (ENSHGLG00000004119) #33 Naked mole-rat female MODERN SPECIES 21 NIBAN3 (ENSHGLG00000018791) COLGALT1 (ENSHGLG00000019149) ENSHGLG00000009262 ENSHGLG00000036279 ENSHGLG00000042232 ENSHGLG00000033559 ENSHGLG00000050909 ENSHGLG00000045781 ENSHGLG00000039462 ENSHGLG00000003634 ENSHGLG00000046308 ENSHGLG00000044420 ENSHGLG00000049463 ENSHGLG00000035026 ENSHGLG00000044227 ENSHGLG00000032960 #22 ENSHGLG00000032173 ENSHGLG00000034587 ENSHGLG00000002680 ENSHGLG00000040658 ENSHGLG00000010518 S1PR4 (ENSHGLG00000042045) GNA15 (ENSHGLG00000033945) GNA11 (ENSHGLG00000035049) AES (ENSHGLG00000036417) TLE2 (ENSHGLG00000013600) ENSHGLG00000037855 ENSHGLG00000049208 ENSHGLG00000016167 FZR1 (ENSHGLG00000019224) ENSHGLG00000014588 Hystricomorpha_a ANCESTRAL SPECIES 17 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Hystricomorpha_b ANCESTRAL SPECIES 24 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Long-tailed chinchilla MODERN SPECIES 156 ATP5MC3 (ENSCLAG00000002573) #20 ATF2 (ENSCLAG00000002705) #21 CHN1 (ENSCLAG00000003215) #22 CHRNA1 (ENSCLAG00000003608) #23 ENSCLAG00000002683 GPR155 (ENSCLAG00000002801) #26 SCRN3 (ENSCLAG00000003139) #27 CIR1 (ENSCLAG00000003669) #28 SP9 (ENSCLAG00000003831) OLA1 (ENSCLAG00000008657) #30 SP3 (ENSCLAG00000008720) #31 ENSCLAG00000008943 ENSCLAG00000017678 CDCA7 (ENSCLAG00000003995) #33 ENSCLAG00000006706 RAPGEF4 (ENSCLAG00000003849) #37 PDK1 (ENSCLAG00000005471) ITGA6 (ENSCLAG00000006496) Degu MODERN SPECIES 106 HOXD1 (ENSODEG00000008961) #9 HOXD3 (ENSODEG00000009722) #10 HOXD4 (ENSODEG00000010297) #11 ENSODEG00000010496 #12 HOXD9 (ENSODEG00000008626) #13 HOXD10 (ENSODEG00000010382) #14 ENSODEG00000010934 #15 HOXD12 (ENSODEG00000008376) #16 HOXD13 (ENSODEG00000008793) #17 EVX2 (ENSODEG00000010771) #18 ENSODEG00000008992 LNPK (ENSODEG00000010046) #19 ENSODEG00000010385 ENSODEG00000010951 #20 ATF2 (ENSODEG00000010947) #21 CHN1 (ENSODEG00000008560) #22 CHRNA1 (ENSODEG00000010458) #23 ENSODEG00000019598 ENSODEG00000008975 ENSODEG00000008878 GPR155 (ENSODEG00000009263) #26 ENSODEG00000009961 #27 CIR1 (ENSODEG00000009325) #28 SP9 (ENSODEG00000009569) OLA1 (ENSODEG00000009011) #30 ENSODEG00000010224 ENSODEG00000019637 SP3 (ENSODEG00000008679) #31 CDCA7 (ENSODEG00000009927) #33 ENSODEG00000009783 #35 RAPGEF4 (ENSODEG00000010386) #37 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 3 ENSCPOG00000027250 MTX2 (ENSCPOG00000011099) #8 HOXD1 (ENSCPOG00000005509) #9 HOXD3 (ENSCPOG00000034932) #10 HOXD4 (ENSCPOG00000036552) #11 HOXD8 (ENSCPOG00000015005) #12 HOXD9 (ENSCPOG00000015006) #13 HOXD10 (ENSCPOG00000011368) #14 ENSCPOG00000019766 #15 HOXD12 (ENSCPOG00000005496) #16 HOXD13 (ENSCPOG00000006722) #17 EVX2 (ENSCPOG00000006711) #18 LNPK (ENSCPOG00000010971) #19 ATP5MC3 (ENSCPOG00000040161) #20 ATF2 (ENSCPOG00000004637) #21 ENSCPOG00000002789 #22 CHRNA1 (ENSCPOG00000000036) #23 ENSCPOG00000034131 GPR155 (ENSCPOG00000010286) #26 SCRN3 (ENSCPOG00000010281) #27 CIR1 (ENSCPOG00000010275) #28 SP9 (ENSCPOG00000032651) OLA1 (ENSCPOG00000031110) #30 SP3 (ENSCPOG00000002942) #31 CDCA7 (ENSCPOG00000011784) #33 MAP3K20 (ENSCPOG00000040705) #35 RAPGEF4 (ENSCPOG00000010605) #37 PDK1 (ENSCPOG00000008434) ITGA6 (ENSCPOG00000008418) DLX2 (ENSCPOG00000040000) DLX1 (ENSCPOG00000040135) Guinea pig MODERN SPECIES 94 ENSCPOG00000027159 ENSCPOG00000001770 #22 ENSCPOG00000021568 ENSCPOG00000002569 YTHDC1 (ENSCPOG00000010929) TMPRSS11E (ENSCPOG00000012804) ENSCPOG00000026992 TMPRSS11F (ENSCPOG00000031769) ENSCPOG00000025643 TMPRSS11A (ENSCPOG00000036189) TMPRSS11D (ENSCPOG00000010047) ENSCPOG00000034504 GNRHR (ENSCPOG00000014609) UBA6 (ENSCPOG00000001877) STAP1 (ENSCPOG00000001874) CENPC (ENSCPOG00000001871) ENSCPOG00000035209 Rodentia_B ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Kangaroo rat MODERN SPECIES 324 Agps (ENSDORG00000006480) Nfe2l2 (ENSDORG00000030173) Hnrnpa3 (ENSDORG00000011155) Mtx2 (ENSDORG00000003848) #8 Hoxd1 (ENSDORG00000009445) #9 Hoxd3 (ENSDORG00000029389) #10 Hoxd4 (ENSDORG00000028681) #11 ENSDORG00000027655 #12 Hoxd10 (ENSDORG00000009436) #14 ENSDORG00000029219 #15 Hoxd12 (ENSDORG00000009434) #16 Evx2 (ENSDORG00000009432) #18 Lnpk (ENSDORG00000015736) #19 Atp5g3 (ENSDORG00000012973) #20 Atf2 (ENSDORG00000024409) #21 Chn1 (ENSDORG00000002182) #22 Chrna1 (ENSDORG00000001136) #23 ENSDORG00000027952 Gpr155 (ENSDORG00000013683) #26 ENSDORG00000013682 #27 Cir1 (ENSDORG00000013676) #28 Sp9 (ENSDORG00000025534) ENSDORG00000008681 #30 Sp3 (ENSDORG00000009045) #31 Cdca7 (ENSDORG00000001759) #33 ENSDORG00000005439 #35 Rapgef4 (ENSDORG00000005529) #37 Pdk1 (ENSDORG00000000069) Itga6 (ENSDORG00000005156) Dlx2 (ENSDORG00000030062) Dlx1 (ENSDORG00000030117) Myomorpha ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b.p ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Lesser Egyptian jerboa MODERN SPECIES 75 Agps (ENSJJAG00000016720) Nfe2l2 (ENSJJAG00000019899) ENSJJAG00000000149 ENSJJAG00000013228 #8 ENSJJAG00000019952 Hoxd1 (ENSJJAG00000019059) #9 Hoxd10 (ENSJJAG00000011932) #14 Hoxd11 (ENSJJAG00000012344) #15 Hoxd12 (ENSJJAG00000016261) #16 Hoxd13 (ENSJJAG00000016388) #17 Evx2 (ENSJJAG00000017484) #18 Lnpk (ENSJJAG00000011710) #19 ENSJJAG00000013766 Atp5g3 (ENSJJAG00000022403) #20 Atf2 (ENSJJAG00000015836) #21 Chn1 (ENSJJAG00000015001) #22 ENSJJAG00000014124 Chrna1 (ENSJJAG00000018710) #23 Scrn3 (ENSJJAG00000021027) #27 Cir1 (ENSJJAG00000010849) #28 Sp9 (ENSJJAG00000020056) ENSJJAG00000022958 #30 Sp3 (ENSJJAG00000011138) #31 Cdca7 (ENSJJAG00000014387) #33 ENSJJAG00000016192 #35 Rapgef4 (ENSJJAG00000009830) #37 ENSJJAG00000015889 Pdk1 (ENSJJAG00000020102) Itga6 (ENSJJAG00000012292) Dlx2 (ENSJJAG00000019163) Dlx1 (ENSJJAG00000008558) Muroidea ANCESTRAL SPECIES 34 ENSGT00940000153147.m.a.a.a.b.a.b.p ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Upper Galilee mountains blind mole rat MODERN SPECIES 1735 ENSNGAG00000021745 Mtx2 (ENSNGAG00000020555) #8 Hoxd1 (ENSNGAG00000021714) #9 Hoxd3 (ENSNGAG00000021055) #10 Hoxd4 (ENSNGAG00000020270) #11 Hoxd8 (ENSNGAG00000011799) #12 Hoxd9 (ENSNGAG00000011105) #13 Hoxd10 (ENSNGAG00000023868) #14 Hoxd11 (ENSNGAG00000023438) #15 Hoxd12 (ENSNGAG00000023455) #16 Hoxd13 (ENSNGAG00000023727) #17 Evx2 (ENSNGAG00000023877) #18 Lnpk (ENSNGAG00000023466) #19 Atp5g3 (ENSNGAG00000004748) #20 Atf2 (ENSNGAG00000003870) #21 Chn1 (ENSNGAG00000021893) #22 Chrna1 (ENSNGAG00000023534) #23 ENSNGAG00000022478 Gpr155 (ENSNGAG00000019246) #26 Scrn3 (ENSNGAG00000008783) #27 Cir1 (ENSNGAG00000023091) #28 Sp9 (ENSNGAG00000002858) Ola1 (ENSNGAG00000017639) #30 ENSNGAG00000012551 ENSNGAG00000011265 #31 Cdca7 (ENSNGAG00000005943) #33 ENSNGAG00000023564 #35 Rapgef4 (ENSNGAG00000024160) #37 ENSNGAG00000021913 Itga6 (ENSNGAG00000023769) Dlx2 (ENSNGAG00000022793) Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b.p ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Cricetidae ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b.p ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Cricetinae ANCESTRAL SPECIES 1 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 ENSGT00940000157735 Chinese hamster chok1gshd MODERN SPECIES 188 ENSCGRG00001014512 Hoxd1 (ENSCGRG00001011572) #9 Hoxd3 (ENSCGRG00001011863) #10 Hoxd4 (ENSCGRG00001012360) #11 Hoxd8 (ENSCGRG00001013130) #12 Hoxd9 (ENSCGRG00001005991) #13 Hoxd10 (ENSCGRG00001008302) #14 Hoxd11 (ENSCGRG00001010386) #15 Hoxd12 (ENSCGRG00001000877) #16 Hoxd13 (ENSCGRG00001001661) #17 Evx2 (ENSCGRG00001003649) #18 ENSCGRG00001006802 Lnpk (ENSCGRG00001011515) #19 Atp5g3 (ENSCGRG00001012041) #20 Atf2 (ENSCGRG00001015584) #21 Chn1 (ENSCGRG00001019152) #22 ENSCGRG00001019803 Chrna1 (ENSCGRG00001020291) #23 ENSCGRG00001021853 Gpr155 (ENSCGRG00001014219) #26 Scrn3 (ENSCGRG00001014709) #27 Cir1 (ENSCGRG00001015518) #28 Sp9 (ENSCGRG00001024896) Ola1 (ENSCGRG00001001469) #30 ENSCGRG00001003688 ENSCGRG00001005867 #31 ENSCGRG00001009149 Cdca7 (ENSCGRG00001013059) #33 Map3k20 (ENSCGRG00001013908) #35 Rapgef4 (ENSCGRG00001015061) #37 ENSCGRG00001016131 Golden Hamster MODERN SPECIES 618 Mtx2 (ENSMAUG00000017870) #8 Hoxd1 (ENSMAUG00000018401) #9 Hoxd3 (ENSMAUG00000018318) #10 Hoxd4 (ENSMAUG00000018545) #11 Hoxd8 (ENSMAUG00000018092) #12 Hoxd9 (ENSMAUG00000018538) #13 Hoxd10 (ENSMAUG00000016731) #14 ENSMAUG00000020249 #15 Hoxd12 (ENSMAUG00000018416) #16 Hoxd13 (ENSMAUG00000017185) #17 Evx2 (ENSMAUG00000020383) #18 Lnpk (ENSMAUG00000018821) #19 ENSMAUG00000020495 Atp5g3 (ENSMAUG00000017685) #20 Atf2 (ENSMAUG00000018366) #21 Chn1 (ENSMAUG00000018455) #22 Chrna1 (ENSMAUG00000017924) #23 ENSMAUG00000019796 #24 Gpr155 (ENSMAUG00000019481) #26 Scrn3 (ENSMAUG00000020703) #27 ENSMAUG00000019383 #28 Sp9 (ENSMAUG00000020520) Ola1 (ENSMAUG00000019168) #30 ENSMAUG00000001485 ENSMAUG00000020351 Cdca7 (ENSMAUG00000020932) #33 Map3k20 (ENSMAUG00000021309) #35 Rapgef4 (ENSMAUG00000021185) #37 Pdk1 (ENSMAUG00000019499) Itga6 (ENSMAUG00000020187) Dlx2 (ENSMAUG00000021831) Cricetidae_B ANCESTRAL SPECIES 7 ENSGT00940000153147.m.a.a.a.b.a.b.p ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Prairie vole MODERN SPECIES 12 ENSMOCG00000019409 Mtx2 (ENSMOCG00000017110) #8 Hoxd1 (ENSMOCG00000014086) #9 Hoxd4 (ENSMOCG00000013646) #11 Hoxd3 (ENSMOCG00000022552) #10 Hoxd8 (ENSMOCG00000022746) #12 Hoxd9 (ENSMOCG00000005870) #13 Hoxd10 (ENSMOCG00000006052) #14 Hoxd11 (ENSMOCG00000019226) #15 Hoxd12 (ENSMOCG00000018953) #16 Hoxd13 (ENSMOCG00000014618) #17 Evx2 (ENSMOCG00000010466) #18 Lnpk (ENSMOCG00000022345) #19 ENSMOCG00000012786 #20 Atf2 (ENSMOCG00000015301) #21 Chn1 (ENSMOCG00000005574) #22 Chrna1 (ENSMOCG00000020367) #23 ENSMOCG00000014660 Gpr155 (ENSMOCG00000003950) #26 Scrn3 (ENSMOCG00000018966) #27 Cir1 (ENSMOCG00000017545) #28 Sp9 (ENSMOCG00000019136) ENSMOCG00000003125 #30 ENSMOCG00000003269 Sp3 (ENSMOCG00000022929) #31 Cdca7 (ENSMOCG00000015927) #33 Map3k20 (ENSMOCG00000001753) #35 Rapgef4 (ENSMOCG00000020670) #37 Pdk1 (ENSMOCG00000020171) Itga6 (ENSMOCG00000013969) Dlx2 (ENSMOCG00000011375) Northern American deer mouse MODERN SPECIES 17 Hoxd1 (ENSPEMG00000021389) #9 Hoxd3 (ENSPEMG00000028862) #10 Hoxd4 (ENSPEMG00000024627) #11 ENSPEMG00000029322 ENSPEMG00000028623 #12 Hoxd9 (ENSPEMG00000006162) #13 Hoxd10 (ENSPEMG00000030445) #14 ENSPEMG00000018816 #15 Hoxd12 (ENSPEMG00000019240) #16 Hoxd13 (ENSPEMG00000022412) #17 Evx2 (ENSPEMG00000022145) #18 Lnpk (ENSPEMG00000017827) #19 ENSPEMG00000008662 Atp5g3 (ENSPEMG00000023766) #20 Atf2 (ENSPEMG00000021625) #21 Chn1 (ENSPEMG00000022535) #22 Chrna1 (ENSPEMG00000012571) #23 Wipf1 (ENSPEMG00000013848) Gpr155 (ENSPEMG00000022602) #26 Scrn3 (ENSPEMG00000022424) #27 Cir1 (ENSPEMG00000022223) #28 Sp9 (ENSPEMG00000029035) Ola1 (ENSPEMG00000021970) #30 Sp3 (ENSPEMG00000022766) #31 Cdca7 (ENSPEMG00000022184) #33 Map3k20 (ENSPEMG00000000421) #35 Rapgef4 (ENSPEMG00000009780) #37 Pdk1 (ENSPEMG00000002841) Itga6 (ENSPEMG00000021809) Dlx2 (ENSPEMG00000028459) Dlx1 (ENSPEMG00000026584) Murinae ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Rat DUPLICATION Rat MODERN SPECIES 13 Hoxd1 (ENSRNOG00000001572) #9 Hoxd3 (ENSRNOG00000001577) #10 AABR07052559.1 (ENSRNOG00000053144) Hoxd4 (ENSRNOG00000001578) #11 Hoxd8 (ENSRNOG00000071108) #12 Hoxd9 (ENSRNOG00000001580) #13 Hoxd10 (ENSRNOG00000001581) #14 Hoxd11 (ENSRNOG00000069591) #15 Hoxd12 (ENSRNOG00000001587) #16 Hoxd13 (ENSRNOG00000001588) #17 Evx2 (ENSRNOG00000001589) #18 Lnpk (ENSRNOG00000001593) #19 Atp5mc3 (ENSRNOG00000001596) #20 Atf2 (ENSRNOG00000001597) #21 ENSRNOG00000068403 Chn1 (ENSRNOG00000017939) #22 Chrna1 (ENSRNOG00000018286) #23 Rbx1-ps2 (ENSRNOG00000067031) Wipf1 (ENSRNOG00000018406) Gpr155 (ENSRNOG00000018485) #26 Scrn3 (ENSRNOG00000018657) #27 Cir1 (ENSRNOG00000018719) #28 Sp9 (ENSRNOG00000028187) ENSRNOG00000032195 Ola1 (ENSRNOG00000019047) #30 Sp3 (ENSRNOG00000060479) #31 AC120066.1 (ENSRNOG00000001510) LOC120101567 (ENSRNOG00000028492) Eno1-ps1 (ENSRNOG00000028543) AABR07052519.1 (ENSRNOG00000029423) Cdca7 (ENSRNOG00000001514) #33 Rat MODERN SPECIES 9 LOC102549410 (ENSRNOG00000068672) Tmx3 (ENSRNOG00000045740) Dok6 (ENSRNOG00000038190) Cd226 (ENSRNOG00000038197) LOC689166 (ENSRNOG00000004661) Rttn (ENSRNOG00000038200) AABR07032856.1 (ENSRNOG00000038211) #22 ENSRNOG00000067774 Socs6 (ENSRNOG00000038212) ENSRNOG00000064792 RGD1560813 (ENSRNOG00000013622) RGD1559726 (ENSRNOG00000034073) Cbln2 (ENSRNOG00000013654) Neto1 (ENSRNOG00000014006) ENSRNOG00000067088 Fbxo15 (ENSRNOG00000038225) Timm21 (ENSRNOG00000015142) Cyb5a (ENSRNOG00000070068) LOC100359752 (ENSRNOG00000038241) Dipk1c (ENSRNOG00000015448) Cndp2 (ENSRNOG00000015591) Cndp1 (ENSRNOG00000027739) Mus ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Mus_A ANCESTRAL SPECIES ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436.k #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Mouse MODERN SPECIES 11 Hnrnpa3 (ENSMUSG00000059005) Mtx2 (ENSMUSG00000027099) #8 Hoxd1 (ENSMUSG00000042448) #9 Hoxd4 (ENSMUSG00000101174) #11 Hoxd3 (ENSMUSG00000079277) #10 Hoxd8 (ENSMUSG00000027102) #12 Hoxd9 (ENSMUSG00000043342) #13 Hoxd10 (ENSMUSG00000050368) #14 Hoxd11 (ENSMUSG00000042499) #15 Hoxd12 (ENSMUSG00000001823) #16 Hoxd13 (ENSMUSG00000001819) #17 Evx2 (ENSMUSG00000001815) #18 Lnpk (ENSMUSG00000009207) #19 Atp5g3 (ENSMUSG00000018770) #20 Atf2 (ENSMUSG00000027104) #21 Chn1 (ENSMUSG00000056486) #22 Chrna1 (ENSMUSG00000027107) #23 Wipf1 (ENSMUSG00000075284) Gpr155 (ENSMUSG00000041762) #26 Scrn3 (ENSMUSG00000008226) #27 Cir1 (ENSMUSG00000041777) #28 Sp9 (ENSMUSG00000068859) Ola1 (ENSMUSG00000027108) #30 Sp3 (ENSMUSG00000027109) #31 Cdca7 (ENSMUSG00000055612) #33 Map3k20 (ENSMUSG00000004085) #35 Rapgef4 (ENSMUSG00000049044) #37 Pdk1 (ENSMUSG00000006494) Itga6 (ENSMUSG00000027111) Dlx2 (ENSMUSG00000023391) Dlx1 (ENSMUSG00000041911) Mus_C ANCESTRAL SPECIES ENSGT00940000153147.m.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436.k #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 spretus MODERN SPECIES 11 Mtx2 (MGP_SPRETEiJ_G0024600) #8 Hoxd1 (MGP_SPRETEiJ_G0024599) #9 MGP_SPRETEiJ_G0024598 #11 Hoxd4 (MGP_SPRETEiJ_G0024597) #11 Hoxd3 (MGP_SPRETEiJ_G0024596) #10 Hoxd8 (MGP_SPRETEiJ_G0024595) #12 Hoxd9 (MGP_SPRETEiJ_G0024594) #13 Hoxd10 (MGP_SPRETEiJ_G0024593) #14 Hoxd11 (MGP_SPRETEiJ_G0024592) #15 Hoxd12 (MGP_SPRETEiJ_G0024591) #16 Hoxd13 (MGP_SPRETEiJ_G0024590) #17 Evx2 (MGP_SPRETEiJ_G0024589) #18 Lnpk (MGP_SPRETEiJ_G0024588) #19 Atp5g3 (MGP_SPRETEiJ_G0024587) #20 Atf2 (MGP_SPRETEiJ_G0024586) #21 Chn1 (MGP_SPRETEiJ_G0024585) #22 Chrna1 (MGP_SPRETEiJ_G0024584) #23 Wipf1 (MGP_SPRETEiJ_G0024583) Gpr155 (MGP_SPRETEiJ_G0024582) #26 Scrn3 (MGP_SPRETEiJ_G0024581) #27 Cir1 (MGP_SPRETEiJ_G0024580) #28 Sp9 (MGP_SPRETEiJ_G0024579) Ola1 (MGP_SPRETEiJ_G0024578) #30 MGP_SPRETEiJ_G0024577 Sp3 (MGP_SPRETEiJ_G0024576) #31 Cdca7 (MGP_SPRETEiJ_G0024575) #33 Map3k20 (MGP_SPRETEiJ_G0024574) #35 Rapgef4 (MGP_SPRETEiJ_G0024573) #37 Pdk1 (MGP_SPRETEiJ_G0024572) Itga6 (MGP_SPRETEiJ_G0024571) Dlx2 (MGP_SPRETEiJ_G0024570) Steppe mouse MODERN SPECIES 3326 Hoxd1 (ENSMSIG00000006137) #9 Hoxd3 (ENSMSIG00000006158) #10 ENSMSIG00000006186 #11 Hoxd8 (ENSMSIG00000006283) #12 Hoxd9 (ENSMSIG00000006304) #13 Hoxd10 (ENSMSIG00000006313) #14 Hoxd11 (ENSMSIG00000006326) #15 Hoxd12 (ENSMSIG00000006333) #16 Hoxd13 (ENSMSIG00000006348) #17 Evx2 (ENSMSIG00000006361) #18 Lnpk (ENSMSIG00000006386) #19 ENSMSIG00000006495 Atp5g3 (ENSMSIG00000006512) #20 Atf2 (ENSMSIG00000006546) #21 ENSMSIG00000006659 Chn1 (ENSMSIG00000006692) #22 Chrna1 (ENSMSIG00000006852) #23 Wipf1 (ENSMSIG00000006899) Gpr155 (ENSMSIG00000006975) #26 Scrn3 (ENSMSIG00000007111) #27 Cir1 (ENSMSIG00000007130) #28 Sp9 (ENSMSIG00000007182) Ola1 (ENSMSIG00000007200) #30 ENSMSIG00000007302 ENSMSIG00000007310 Sp3 (ENSMSIG00000007322) #31 ENSMSIG00000007399 Cdca7 (ENSMSIG00000007687) #33 Map3k20 (ENSMSIG00000007713) #35 Rapgef4 (ENSMSIG00000007773) #37 Pdk1 (ENSMSIG00000008171) Ryukyu mouse MODERN SPECIES 11 Mtx2 (MGP_CAROLIEiJ_G0023677) #8 Hoxd1 (MGP_CAROLIEiJ_G0023676) #9 MGP_CAROLIEiJ_G0023675 #11 Hoxd4 (MGP_CAROLIEiJ_G0023674) #11 Hoxd3 (MGP_CAROLIEiJ_G0023673) #10 Hoxd8 (MGP_CAROLIEiJ_G0023672) #12 Hoxd9 (MGP_CAROLIEiJ_G0023671) #13 Hoxd10 (MGP_CAROLIEiJ_G0023670) #14 Hoxd11 (MGP_CAROLIEiJ_G0023669) #15 Hoxd12 (MGP_CAROLIEiJ_G0023668) #16 Hoxd13 (MGP_CAROLIEiJ_G0023667) #17 Evx2 (MGP_CAROLIEiJ_G0023666) #18 Lnpk (MGP_CAROLIEiJ_G0023665) #19 Atp5g3 (MGP_CAROLIEiJ_G0023664) #20 Atf2 (MGP_CAROLIEiJ_G0023663) #21 Chn1 (MGP_CAROLIEiJ_G0023662) #22 Chrna1 (MGP_CAROLIEiJ_G0023661) #23 Wipf1 (MGP_CAROLIEiJ_G0023660) Gpr155 (MGP_CAROLIEiJ_G0023659) #26 Scrn3 (MGP_CAROLIEiJ_G0023658) #27 Cir1 (MGP_CAROLIEiJ_G0023657) #28 Sp9 (MGP_CAROLIEiJ_G0023656) Ola1 (MGP_CAROLIEiJ_G0023655) #30 MGP_CAROLIEiJ_G0023654 Sp3 (MGP_CAROLIEiJ_G0023653) #31 Cdca7 (MGP_CAROLIEiJ_G0023652) #33 Map3k20 (MGP_CAROLIEiJ_G0023651) #35 Rapgef4 (MGP_CAROLIEiJ_G0023650) #37 Pdk1 (MGP_CAROLIEiJ_G0023649) Itga6 (MGP_CAROLIEiJ_G0023648) Dlx2 (MGP_CAROLIEiJ_G0023647) Shrew mouse MODERN SPECIES 16 Mtx2 (MGP_PahariEiJ_G0025129) #8 Hoxd1 (MGP_PahariEiJ_G0025128) #9 MGP_PahariEiJ_G0025127 #11 Hoxd4 (MGP_PahariEiJ_G0025126) #11 Hoxd3 (MGP_PahariEiJ_G0025125) #10 Hoxd8 (MGP_PahariEiJ_G0025124) #12 Hoxd9 (MGP_PahariEiJ_G0025123) #13 Hoxd10 (MGP_PahariEiJ_G0025122) #14 Hoxd11 (MGP_PahariEiJ_G0025121) #15 Hoxd12 (MGP_PahariEiJ_G0025120) #16 Hoxd13 (MGP_PahariEiJ_G0025119) #17 Evx2 (MGP_PahariEiJ_G0025118) #18 Lnpk (MGP_PahariEiJ_G0025117) #19 Atp5g3 (MGP_PahariEiJ_G0025116) #20 Atf2 (MGP_PahariEiJ_G0025115) #21 MGP_PahariEiJ_G0025114 #22 Chrna1 (MGP_PahariEiJ_G0025113) #23 Wipf1 (MGP_PahariEiJ_G0025112) Gpr155 (MGP_PahariEiJ_G0025111) #26 Scrn3 (MGP_PahariEiJ_G0025110) #27 MGP_PahariEiJ_G0025109 #28 Sp9 (MGP_PahariEiJ_G0025108) Ola1 (MGP_PahariEiJ_G0025107) #30 MGP_PahariEiJ_G0025106 Sp3 (MGP_PahariEiJ_G0025105) #31 Cdca7 (MGP_PahariEiJ_G0025104) #33 Map3k20 (MGP_PahariEiJ_G0025103) #35 Rapgef4 (MGP_PahariEiJ_G0025102) #37 Pdk1 (MGP_PahariEiJ_G0025101) Itga6 (MGP_PahariEiJ_G0025100) Dlx2 (MGP_PahariEiJ_G0025099) Tree shrew MODERN SPECIES 1857 CHN1 (ENSTBEG00000012750) #22 CHRNA1 (ENSTBEG00000012554) #23 Primates ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Strepsirrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Lemuriformes ANCESTRAL SPECIES 5 ENSGT00940000153147.m.a.a.a.b.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.v.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Mouse lemur MODERN SPECIES 30 ENSMICG00000027841 MTX2 (ENSMICG00000004295) #8 HOXD1 (ENSMICG00000044650) #9 HOXD3 (ENSMICG00000004286) #10 HOXD4 (ENSMICG00000043209) #11 HOXD8 (ENSMICG00000004277) #12 HOXD9 (ENSMICG00000031229) #13 HOXD10 (ENSMICG00000028373) #14 HOXD11 (ENSMICG00000048033) #15 HOXD12 (ENSMICG00000002172) #16 HOXD13 (ENSMICG00000002170) #17 EVX2 (ENSMICG00000035343) #18 LNPK (ENSMICG00000027707) #19 ATP5MC3 (ENSMICG00000006421) #20 ATF2 (ENSMICG00000006417) #21 CHN1 (ENSMICG00000014292) #22 ENSMICG00000038672 CHRNA1 (ENSMICG00000014284) #23 ENSMICG00000031974 #24 GPR155 (ENSMICG00000000369) #26 SCRN3 (ENSMICG00000000366) #27 CIR1 (ENSMICG00000026886) #28 SP9 (ENSMICG00000031506) ENSMICG00000007356 ENSMICG00000000354 #30 SP3 (ENSMICG00000014796) #31 CDCA7 (ENSMICG00000016991) #33 MAP3K20 (ENSMICG00000011055) #35 RAPGEF4 (ENSMICG00000011026) #37 PDK1 (ENSMICG00000007005) ITGA6 (ENSMICG00000006990) Lemuriformes_a ANCESTRAL SPECIES 69 ENSGT00940000153147.m.a.a.a.b.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.v.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Greater bamboo lemur MODERN SPECIES 243 HOXD1 (ENSPSMG00000024516) #9 ENSPSMG00000024512 HOXD3 (ENSPSMG00000024507) #10 HOXD4 (ENSPSMG00000024504) #11 HOXD8 (ENSPSMG00000024501) #12 HOXD9 (ENSPSMG00000024487) #13 HOXD10 (ENSPSMG00000024482) #14 HOXD11 (ENSPSMG00000024479) #15 HOXD12 (ENSPSMG00000024476) #16 HOXD13 (ENSPSMG00000024474) #17 EVX2 (ENSPSMG00000024469) #18 ENSPSMG00000024465 LNPK (ENSPSMG00000024460) #19 ATP5MC3 (ENSPSMG00000024446) #20 ATF2 (ENSPSMG00000024416) #21 CHN1 (ENSPSMG00000024301) #22 CHRNA1 (ENSPSMG00000024264) #23 WIPF1 (ENSPSMG00000024219) GPR155 (ENSPSMG00000024199) #26 SCRN3 (ENSPSMG00000024170) #27 CIR1 (ENSPSMG00000024153) #28 SP9 (ENSPSMG00000024136) OLA1 (ENSPSMG00000024129) #30 SP3 (ENSPSMG00000024117) #31 CDCA7 (ENSPSMG00000024083) #33 ENSPSMG00000024060 MAP3K20 (ENSPSMG00000024048) #35 RAPGEF4 (ENSPSMG00000023978) #37 PDK1 (ENSPSMG00000023879) ITGA6 (ENSPSMG00000023755) DLX2 (ENSPSMG00000023598) Coquerels sifaka MODERN SPECIES 478 NFE2L2 (ENSPCOG00000007362) MTX2 (ENSPCOG00000025077) #8 HOXD1 (ENSPCOG00000024445) #9 HOXD3 (ENSPCOG00000017195) #10 HOXD4 (ENSPCOG00000018337) #11 HOXD8 (ENSPCOG00000024233) #12 HOXD9 (ENSPCOG00000026809) #13 HOXD10 (ENSPCOG00000023637) #14 HOXD11 (ENSPCOG00000015055) #15 HOXD12 (ENSPCOG00000022036) #16 HOXD13 (ENSPCOG00000018735) #17 EVX2 (ENSPCOG00000022416) #18 LNPK (ENSPCOG00000026983) #19 ATP5MC3 (ENSPCOG00000016374) #20 ATF2 (ENSPCOG00000025416) #21 CHN1 (ENSPCOG00000018830) #22 CHRNA1 (ENSPCOG00000020642) #23 ENSPCOG00000015733 #24 ENSPCOG00000018466 GPR155 (ENSPCOG00000014376) #26 SCRN3 (ENSPCOG00000015456) #27 CIR1 (ENSPCOG00000014298) #28 SP9 (ENSPCOG00000018883) ENSPCOG00000017353 #30 SP3 (ENSPCOG00000017224) #31 CDCA7 (ENSPCOG00000001432) #33 MAP3K20 (ENSPCOG00000027012) #35 RAPGEF4 (ENSPCOG00000022261) #37 PDK1 (ENSPCOG00000009920) ITGA6 (ENSPCOG00000020776) DLX2 (ENSPCOG00000010310) Bushbaby MODERN SPECIES 163 HOXD1 (ENSOGAG00000015712) #9 HOXD3 (ENSOGAG00000015710) #10 HOXD4 (ENSOGAG00000029168) #11 HOXD8 (ENSOGAG00000015707) #12 HOXD9 (ENSOGAG00000015697) #13 HOXD10 (ENSOGAG00000015694) #14 HOXD11 (ENSOGAG00000029520) #15 HOXD12 (ENSOGAG00000015689) #16 HOXD13 (ENSOGAG00000027055) #17 EVX2 (ENSOGAG00000025378) #18 LNPK (ENSOGAG00000030372) #19 ENSOGAG00000030354 ENSOGAG00000026184 ATP5MC3 (ENSOGAG00000027578) #20 ATF2 (ENSOGAG00000011373) #21 CHN1 (ENSOGAG00000000894) #22 CHRNA1 (ENSOGAG00000000890) #23 WIPF1 (ENSOGAG00000016579) GPR155 (ENSOGAG00000016571) #26 SCRN3 (ENSOGAG00000016569) #27 CIR1 (ENSOGAG00000016564) #28 SP9 (ENSOGAG00000034062) OLA1 (ENSOGAG00000016557) #30 SP3 (ENSOGAG00000026846) #31 CDCA7 (ENSOGAG00000000508) #33 ENSOGAG00000014054 #35 ENSOGAG00000033209 RAPGEF4 (ENSOGAG00000014048) #37 Haplorrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Tarsier MODERN SPECIES 5208 GAL3ST4 (ENSTSYG00000036714) GPC2 (ENSTSYG00000025495) ATF2 (ENSTSYG00000002606) #21 CHN1 (ENSTSYG00000004837) #22 CHRNA1 (ENSTSYG00000005526) #23 Simiiformes ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Platyrrhini ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000155436.o.a.b #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Cebidae ANCESTRAL SPECIES 11 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000155436.o.a.a #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Marmoset MODERN SPECIES 18 HOXD3 (ENSCJAG00000063715) #10 HOXD4 (ENSCJAG00000008286) #11 HOXD8 (ENSCJAG00000008284) #12 HOXD9 (ENSCJAG00000046789) #13 HOXD10 (ENSCJAG00000008269) #14 HOXD11 (ENSCJAG00000048503) #15 HOXD12 (ENSCJAG00000079626) #16 HOXD13 (ENSCJAG00000040882) #17 EVX2 (ENSCJAG00000077487) #18 LNPK (ENSCJAG00000008226) #19 ENSCJAG00000022954 ENSCJAG00000084464 ENSCJAG00000080703 ATP5MC3 (ENSCJAG00000008207) #20 ATF2 (ENSCJAG00000008085) #21 CHN1 (ENSCJAG00000008041) #22 CHRNA1 (ENSCJAG00000008007) #23 WIPF1 (ENSCJAG00000048519) GPR155 (ENSCJAG00000007947) #26 SCRN3 (ENSCJAG00000007909) #27 CIR1 (ENSCJAG00000007884) #28 ENSCJAG00000081398 SP9 (ENSCJAG00000061755) OLA1 (ENSCJAG00000007877) #30 SP3 (ENSCJAG00000007851) #31 CDCA7 (ENSCJAG00000007809) #33 MAP3K20 (ENSCJAG00000007736) #35 RAPGEF4 (ENSCJAG00000007525) #37 PDK1 (ENSCJAG00000007507) ITGA6 (ENSCJAG00000007399) ENSCJAG00000012387 Cebidae_a ANCESTRAL SPECIES 27 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00940000155099.a #31 ENSGT00940000155436.o.a.b #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 ENSGT00940000157735 Bolivian squirrel monkey MODERN SPECIES 46 NFE2L2 (ENSSBOG00000022740) HNRNPA3 (ENSSBOG00000034307) MTX2 (ENSSBOG00000025795) #8 HOXD1 (ENSSBOG00000030906) #9 HOXD3 (ENSSBOG00000031894) #10 HOXD4 (ENSSBOG00000031535) #11 ENSSBOG00000029405 #12 HOXD9 (ENSSBOG00000031095) #13 HOXD10 (ENSSBOG00000020553) #14 HOXD12 (ENSSBOG00000025723) #16 HOXD13 (ENSSBOG00000032579) #17 EVX2 (ENSSBOG00000034364) #18 LNPK (ENSSBOG00000023054) #19 ATP5MC3 (ENSSBOG00000022688) #20 ATF2 (ENSSBOG00000025461) #21 CHN1 (ENSSBOG00000016307) #22 CHRNA1 (ENSSBOG00000035763) #23 WIPF1 (ENSSBOG00000032169) GPR155 (ENSSBOG00000034957) #26 SCRN3 (ENSSBOG00000033089) #27 CIR1 (ENSSBOG00000028527) #28 ENSSBOG00000020259 ENSSBOG00000002999 #30 SP3 (ENSSBOG00000035329) #31 ENSSBOG00000029333 #33 MAP3K20 (ENSSBOG00000023872) #35 RAPGEF4 (ENSSBOG00000031049) #37 PDK1 (ENSSBOG00000019615) ITGA6 (ENSSBOG00000032166) ENSSBOG00000035010 DLX2 (ENSSBOG00000028830) Capuchin MODERN SPECIES 110 ENSCCAG00000035403 #11 HOXD8 (ENSCCAG00000001172) #12 HOXD9 (ENSCCAG00000021007) #13 HOXD10 (ENSCCAG00000020764) #14 HOXD11 (ENSCCAG00000034968) #15 HOXD12 (ENSCCAG00000026325) #16 HOXD13 (ENSCCAG00000032945) #17 EVX2 (ENSCCAG00000032502) #18 LNPK (ENSCCAG00000022702) #19 ENSCCAG00000015947 ENSCCAG00000020514 #20 ATF2 (ENSCCAG00000035902) #21 ENSCCAG00000034541 CHN1 (ENSCCAG00000027038) #22 CHRNA1 (ENSCCAG00000032209) #23 WIPF1 (ENSCCAG00000012994) GPR155 (ENSCCAG00000032455) #26 SCRN3 (ENSCCAG00000022566) #27 CIR1 (ENSCCAG00000030492) #28 SP9 (ENSCCAG00000031565) ENSCCAG00000035969 ENSCCAG00000028608 OLA1 (ENSCCAG00000017844) #30 SP3 (ENSCCAG00000024347) #31 ENSCCAG00000033554 #33 MAP3K20 (ENSCCAG00000029605) #35 RAPGEF4 (ENSCCAG00000034923) #37 PDK1 (ENSCCAG00000023566) ITGA6 (ENSCCAG00000022463) Mas night monkey MODERN SPECIES 572 ENSANAG00000024757 #21 CHN1 (ENSANAG00000024164) #22 CHRNA1 (ENSANAG00000022062) #23 Catarrhini ANCESTRAL SPECIES 16 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b ENSGT00910000148590 ENSGT00940000155353 Hominoidea ANCESTRAL SPECIES 15 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.a.a #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Gibbon MODERN SPECIES 14 MTX2 (ENSNLEG00000006020) #8 HOXD1 (ENSNLEG00000006019) #9 ENSNLEG00000027160 HOXD3 (ENSNLEG00000006018) #10 HOXD4 (ENSNLEG00000006014) #11 ENSNLEG00000006003 #12 HOXD9 (ENSNLEG00000006011) #13 HOXD10 (ENSNLEG00000006010) #14 HOXD12 (ENSNLEG00000006006) #16 HOXD13 (ENSNLEG00000029303) #17 EVX2 (ENSNLEG00000005999) #18 LNPK (ENSNLEG00000005977) #19 ATP5MC3 (ENSNLEG00000005971) #20 ATF2 (ENSNLEG00000005938) #21 ENSNLEG00000028605 CHN1 (ENSNLEG00000005923) #22 CHRNA1 (ENSNLEG00000005914) #23 WIPF1 (ENSNLEG00000005907) ENSNLEG00000033625 GPR155 (ENSNLEG00000005896) #26 SCRN3 (ENSNLEG00000005880) #27 ENSNLEG00000005869 #28 ENSNLEG00000033171 ENSNLEG00000030268 OLA1 (ENSNLEG00000005817) #30 SP3 (ENSNLEG00000005812) #31 ENSNLEG00000036050 ENSNLEG00000031261 CDCA7 (ENSNLEG00000005787) #33 MAP3K20 (ENSNLEG00000005760) #35 ENSNLEG00000033045 Hominidae ANCESTRAL SPECIES 17 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.a.a #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Orangutan MODERN SPECIES 15 ENSPPYG00000037565 HOXD1 (ENSPPYG00000012964) #9 HOXD3 (ENSPPYG00000012963) #10 HOXD4 (ENSPPYG00000034536) #11 HOXD8 (ENSPPYG00000037201) #12 HOXD9 (ENSPPYG00000012959) #13 HOXD10 (ENSPPYG00000012958) #14 HOXD11 (ENSPPYG00000031598) #15 HOXD12 (ENSPPYG00000012957) #16 HOXD13 (ENSPPYG00000012956) #17 EVX2 (ENSPPYG00000012955) #18 LNPK (ENSPPYG00000032630) #19 ATP5MC3 (ENSPPYG00000037033) #20 ENSPPYG00000041465 ATF2 (ENSPPYG00000012951) #21 CHN1 (ENSPPYG00000012950) #22 CHRNA1 (ENSPPYG00000012949) #23 WIPF1 (ENSPPYG00000012948) GPR155 (ENSPPYG00000012947) #26 ENSPPYG00000012946 #27 ENSPPYG00000012945 #28 SP9 (ENSPPYG00000033437) OLA1 (ENSPPYG00000012943) #30 SP3 (ENSPPYG00000012941) #31 CDCA7 (ENSPPYG00000012940) #33 MAP3K20 (ENSPPYG00000012939) #35 RAPGEF4 (ENSPPYG00000012938) #37 PDK1 (ENSPPYG00000012937) ITGA6 (ENSPPYG00000012936) DLX2 (ENSPPYG00000012935) DLX1 (ENSPPYG00000035109) Homo/Pan/Gorilla group ANCESTRAL SPECIES 14 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.a.a #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Gorilla MODERN SPECIES 15 ENSGGOG00000041480 HOXD1 (ENSGGOG00000001348) #9 ENSGGOG00000037792 HOXD3 (ENSGGOG00000037089) #10 HOXD4 (ENSGGOG00000042533) #11 ENSGGOG00000009898 #12 HOXD9 (ENSGGOG00000001343) #13 HOXD10 (ENSGGOG00000001341) #14 ENSGGOG00000044084 ENSGGOG00000038035 #16 ENSGGOG00000041387 #17 EVX2 (ENSGGOG00000001335) #18 LNPK (ENSGGOG00000007852) #19 ATP5MC3 (ENSGGOG00000036796) #20 ATF2 (ENSGGOG00000027461) #21 CHN1 (ENSGGOG00000002177) #22 CHRNA1 (ENSGGOG00000008036) #23 WIPF1 (ENSGGOG00000016773) ENSGGOG00000005480 GPR155 (ENSGGOG00000004876) #26 SCRN3 (ENSGGOG00000034896) #27 SP9 (ENSGGOG00000007345) OLA1 (ENSGGOG00000022215) #30 SP3 (ENSGGOG00000011699) #31 ENSGGOG00000041228 ENSGGOG00000041018 ENSGGOG00000042056 CDCA7 (ENSGGOG00000024973) #33 MAP3K20 (ENSGGOG00000005714) #35 ENSGGOG00000038487 RAPGEF4 (ENSGGOG00000009121) #37 Homo/Pan group ANCESTRAL SPECIES 13 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.a.a #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Human MODERN SPECIES 11 HNRNPA3 (ENSG00000170144) MTX2 (ENSG00000128654) #8 HOXD1 (ENSG00000128645) #9 HOXD4 (ENSG00000170166) #11 HOXD3 (ENSG00000128652) #10 HOXD8 (ENSG00000175879) #12 HOXD9 (ENSG00000128709) #13 HOXD10 (ENSG00000128710) #14 HOXD11 (ENSG00000128713) #15 HOXD12 (ENSG00000170178) #16 HOXD13 (ENSG00000128714) #17 EVX2 (ENSG00000174279) #18 LNPK (ENSG00000144320) #19 ATP5MC3 (ENSG00000154518) #20 ATF2 (ENSG00000115966) #21 CHN1 (ENSG00000128656) #22 CHRNA1 (ENSG00000138435) #23 WIPF1 (ENSG00000115935) GPR155 (ENSG00000163328) #26 SCRN3 (ENSG00000144306) #27 CIR1 (ENSG00000138433) #28 SP9 (ENSG00000217236) OLA1 (ENSG00000138430) #30 SP3 (ENSG00000172845) #31 CDCA7 (ENSG00000144354) #33 MAP3K20 (ENSG00000091436) #35 RAPGEF4 (ENSG00000091428) #37 PDK1 (ENSG00000152256) ITGA6 (ENSG00000091409) DLX2 (ENSG00000115844) DLX1 (ENSG00000144355) Pan ANCESTRAL SPECIES 12 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.a.a #30 ENSGT00940000155099.a #31 ENSGT00950000183087.B ENSGT00940000153137.a.a.h ENSGT00940000162422 ENSGT00940000155436 #33 ENSGT00940000161352 #35 Chimpanzee MODERN SPECIES 15 ENSPTRG00000023851 HOXD1 (ENSPTRG00000052716) #9 ENSPTRG00000051348 HOXD3 (ENSPTRG00000012672) #10 HOXD4 (ENSPTRG00000051862) #11 HOXD8 (ENSPTRG00000012669) #12 HOXD9 (ENSPTRG00000043464) #13 HOXD10 (ENSPTRG00000012667) #14 HOXD11 (ENSPTRG00000012666) #15 HOXD12 (ENSPTRG00000012665) #16 HOXD13 (ENSPTRG00000012664) #17 EVX2 (ENSPTRG00000012663) #18 LNPK (ENSPTRG00000012662) #19 ATP5MC3 (ENSPTRG00000047314) #20 ATF2 (ENSPTRG00000012660) #21 CHN1 (ENSPTRG00000012659) #22 CHRNA1 (ENSPTRG00000012658) #23 WIPF1 (ENSPTRG00000012656) GPR155 (ENSPTRG00000012655) #26 SCRN3 (ENSPTRG00000012653) #27 CIR1 (ENSPTRG00000012652) #28 SP9 (ENSPTRG00000045805) OLA1 (ENSPTRG00000012650) #30 SP3 (ENSPTRG00000012647) #31 ENSPTRG00000044219 ENSPTRG00000051676 ENSPTRG00000052501 CDCA7 (ENSPTRG00000012645) #33 MAP3K20 (ENSPTRG00000012644) #35 ENSPTRG00000052310 RAPGEF4 (ENSPTRG00000012643) #37 Bonobo MODERN SPECIES 15 ENSPPAG00000025118 ENSPPAG00000031665 #9 ENSPPAG00000013988 HOXD3 (ENSPPAG00000031713) #10 HOXD4 (ENSPPAG00000034992) #11 ENSPPAG00000034189 #12 HOXD9 (ENSPPAG00000039242) #13 HOXD10 (ENSPPAG00000036046) #14 ENSPPAG00000028125 #15 HOXD12 (ENSPPAG00000017089) #16 ENSPPAG00000010483 #17 ENSPPAG00000039855 #18 LNPK (ENSPPAG00000030440) #19 ATP5MC3 (ENSPPAG00000036512) #20 ATF2 (ENSPPAG00000027656) #21 ENSPPAG00000023882 #22 CHRNA1 (ENSPPAG00000024985) #23 WIPF1 (ENSPPAG00000037968) ENSPPAG00000040473 GPR155 (ENSPPAG00000032733) #26 SCRN3 (ENSPPAG00000032328) #27 CIR1 (ENSPPAG00000041485) #28 OLA1 (ENSPPAG00000035004) #30 SP3 (ENSPPAG00000028328) #31 ENSPPAG00000037850 ENSPPAG00000027126 CDCA7 (ENSPPAG00000040919) #33 MAP3K20 (ENSPPAG00000000371) #35 RAPGEF4 (ENSPPAG00000037991) #37 ENSPPAG00000041264 PDK1 (ENSPPAG00000042696) Cercopithecidae ANCESTRAL SPECIES 13 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b ENSGT00910000148590 Cercopithecinae ANCESTRAL SPECIES 11 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b ENSGT00910000148590 Vervet Monkey MODERN SPECIES 1 NFE2L2 (ENSCSAG00000014353) ENSCSAG00000014399 MTX2 (ENSCSAG00000014412) #8 HOXD1 (ENSCSAG00000014419) #9 HOXD3 (ENSCSAG00000014422) #10 HOXD4 (ENSCSAG00000014429) #11 HOXD8 (ENSCSAG00000014437) #12 HOXD9 (ENSCSAG00000014441) #13 HOXD10 (ENSCSAG00000014448) #14 HOXD11 (ENSCSAG00000014457) #15 HOXD12 (ENSCSAG00000014464) #16 HOXD13 (ENSCSAG00000014475) #17 EVX2 (ENSCSAG00000014486) #18 LNPK (ENSCSAG00000014506) #19 ATF2 (ENSCSAG00000014523) #21 CHN1 (ENSCSAG00000014539) #22 CHRNA1 (ENSCSAG00000014545) #23 WIPF1 (ENSCSAG00000014556) GPR155 (ENSCSAG00000014572) #26 SCRN3 (ENSCSAG00000014584) #27 CIR1 (ENSCSAG00000014627) #28 SP9 (ENSCSAG00000014648) OLA1 (ENSCSAG00000014670) #30 SP3 (ENSCSAG00000014689) #31 CDCA7 (ENSCSAG00000014699) #33 ENSCSAG00000014701 ENSCSAG00000014706 #35 RAPGEF4 (ENSCSAG00000014720) #37 PDK1 (ENSCSAG00000014733) ITGA6 (ENSCSAG00000014750) DLX2 (ENSCSAG00000014766) Cercopithecinae_a ANCESTRAL SPECIES 16 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00940000165163 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Macaca ANCESTRAL SPECIES 15 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT00390000018390.jc.n ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00940000165163 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Macaca_a ANCESTRAL SPECIES 17 ENSGT00940000161892 #9 ENSGT00910000147400 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00940000166143.A.a.b.b.b.b.a.b.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00980000202811 ENSGT00940000155353 Crab-eating macaque MODERN SPECIES 3 HOXD1 (ENSMFAG00000046035) #9 ENSMFAG00000047422 HOXD3 (ENSMFAG00000034065) #10 HOXD4 (ENSMFAG00000052240) #11 HOXD8 (ENSMFAG00000065214) #12 HOXD9 (ENSMFAG00000000099) #13 HOXD10 (ENSMFAG00000031117) #14 ENSMFAG00000043724 #15 HOXD12 (ENSMFAG00000051547) #16 HOXD13 (ENSMFAG00000033237) #17 ENSMFAG00000053875 LNPK (ENSMFAG00000002105) #19 ENSMFAG00000002936 ATP5MC3 (ENSMFAG00000056189) #20 ATF2 (ENSMFAG00000002278) #21 CHN1 (ENSMFAG00000002404) #22 CHRNA1 (ENSMFAG00000042992) #23 WIPF1 (ENSMFAG00000034165) ENSMFAG00000060672 ENSMFAG00000039499 ENSMFAG00000056942 SCRN3 (ENSMFAG00000042925) #27 GPR155 (ENSMFAG00000035341) #26 SP9 (ENSMFAG00000035384) OLA1 (ENSMFAG00000044124) #30 ENSMFAG00000052622 SP3 (ENSMFAG00000001253) #31 ENSMFAG00000051912 CDCA7 (ENSMFAG00000033844) #33 MAP3K20 (ENSMFAG00000001160) #35 RAPGEF4 (ENSMFAG00000044653) #37 Rhesus MODERN SPECIES 3 MTX2 (ENSMMUG00000010185) #8 HOXD1 (ENSMMUG00000065344) #9 ENSMMUG00000052177 HOXD3 (ENSMMUG00000051761) #10 HOXD4 (ENSMMUG00000060947) #11 HOXD8 (ENSMMUG00000023504) #12 HOXD9 (ENSMMUG00000032599) #13 HOXD10 (ENSMMUG00000046368) #14 HOXD11 (ENSMMUG00000047915) #15 HOXD12 (ENSMMUG00000023501) #16 HOXD13 (ENSMMUG00000055831) #17 EVX2 (ENSMMUG00000061506) #18 LNPK (ENSMMUG00000023498) #19 ATP5MC3 (ENSMMUG00000003954) #20 ATF2 (ENSMMUG00000003947) #21 CHN1 (ENSMMUG00000021797) #22 CHRNA1 (ENSMMUG00000021796) #23 WIPF1 (ENSMMUG00000009593) ENSMMUG00000053004 GPR155 (ENSMMUG00000021012) #26 SCRN3 (ENSMMUG00000023009) #27 CIR1 (ENSMMUG00000023006) #28 SP9 (ENSMMUG00000023005) OLA1 (ENSMMUG00000007092) #30 ENSMMUG00000060201 SP3 (ENSMMUG00000021818) #31 ENSMMUG00000010554 CDCA7 (ENSMMUG00000014228) #33 MAP3K20 (ENSMMUG00000014672) #35 RAPGEF4 (ENSMMUG00000020792) #37 PDK1 (ENSMMUG00000022553) Pig-tailed macaque MODERN SPECIES 585 ENSMNEG00000018849 HOXD3 (ENSMNEG00000040202) #10 HOXD4 (ENSMNEG00000030845) #11 HOXD8 (ENSMNEG00000028133) #12 HOXD9 (ENSMNEG00000044938) #13 HOXD10 (ENSMNEG00000033923) #14 HOXD11 (ENSMNEG00000029127) #15 HOXD12 (ENSMNEG00000002891) #16 HOXD13 (ENSMNEG00000027142) #17 EVX2 (ENSMNEG00000028323) #18 ENSMNEG00000024050 LNPK (ENSMNEG00000028702) #19 ENSMNEG00000035184 ATP5MC3 (ENSMNEG00000029106) #20 ATF2 (ENSMNEG00000037988) #21 CHN1 (ENSMNEG00000033120) #22 ENSMNEG00000009103 CHRNA1 (ENSMNEG00000043912) #23 WIPF1 (ENSMNEG00000045560) ENSMNEG00000031252 GPR155 (ENSMNEG00000028550) #26 SCRN3 (ENSMNEG00000035295) #27 CIR1 (ENSMNEG00000045151) #28 SP9 (ENSMNEG00000034757) OLA1 (ENSMNEG00000040767) #30 SP3 (ENSMNEG00000042516) #31 ENSMNEG00000039997 CDCA7 (ENSMNEG00000033719) #33 MAP3K20 (ENSMNEG00000044858) #35 RAPGEF4 (ENSMNEG00000030581) #37 ENSMNEG00000040448 Cercopithecinae_b ANCESTRAL SPECIES 10 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00940000165163 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 Olive baboon MODERN SPECIES 1 MTX2 (ENSPANG00000013333) #8 HOXD1 (ENSPANG00000009593) #9 HOXD3 (ENSPANG00000000543) #10 HOXD4 (ENSPANG00000000542) #11 HOXD8 (ENSPANG00000049199) #12 HOXD9 (ENSPANG00000001061) #13 HOXD10 (ENSPANG00000050198) #14 HOXD11 (ENSPANG00000049530) #15 ENSPANG00000044332 #16 ENSPANG00000044695 #17 ENSPANG00000039545 #18 LNPK (ENSPANG00000011787) #19 ATP5MC3 (ENSPANG00000031591) #20 ATF2 (ENSPANG00000004806) #21 ENSPANG00000005473 CHN1 (ENSPANG00000008236) #22 CHRNA1 (ENSPANG00000007790) #23 WIPF1 (ENSPANG00000019541) GPR155 (ENSPANG00000006559) #26 SCRN3 (ENSPANG00000001316) #27 CIR1 (ENSPANG00000033102) #28 SP9 (ENSPANG00000051025) ENSPANG00000035758 OLA1 (ENSPANG00000020854) #30 ENSPANG00000037160 SP3 (ENSPANG00000005418) #31 ENSPANG00000050966 CDCA7 (ENSPANG00000024998) #33 MAP3K20 (ENSPANG00000000071) #35 RAPGEF4 (ENSPANG00000007791) #37 PDK1 (ENSPANG00000018423) Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00940000165163 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g #28 ENSGT00940000162304 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 Drill MODERN SPECIES 1072 MTX2 (ENSMLEG00000002029) #8 HOXD1 (ENSMLEG00000035890) #9 HOXD3 (ENSMLEG00000037278) #10 HOXD4 (ENSMLEG00000024188) #11 ENSMLEG00000042507 #12 HOXD9 (ENSMLEG00000025695) #13 HOXD10 (ENSMLEG00000044067) #14 ENSMLEG00000030792 #15 HOXD12 (ENSMLEG00000032533) #16 HOXD13 (ENSMLEG00000031532) #17 EVX2 (ENSMLEG00000035528) #18 LNPK (ENSMLEG00000033659) #19 ENSMLEG00000001270 ATP5MC3 (ENSMLEG00000043816) #20 ATF2 (ENSMLEG00000035167) #21 CHN1 (ENSMLEG00000032406) #22 ENSMLEG00000000615 CHRNA1 (ENSMLEG00000043089) #23 WIPF1 (ENSMLEG00000001484) ENSMLEG00000029654 GPR155 (ENSMLEG00000027961) #26 SCRN3 (ENSMLEG00000043626) #27 CIR1 (ENSMLEG00000009014) #28 OLA1 (ENSMLEG00000040175) #30 ENSMLEG00000042096 SP3 (ENSMLEG00000022357) #31 CDCA7 (ENSMLEG00000036199) #33 MAP3K20 (ENSMLEG00000035407) #35 RAPGEF4 (ENSMLEG00000043070) #37 ENSMLEG00000036771 PDK1 (ENSMLEG00000031983) Sooty mangabey MODERN SPECIES 570 HOXD4 (ENSCATG00000041719) #11 HOXD8 (ENSCATG00000032148) #12 HOXD9 (ENSCATG00000037190) #13 HOXD11 (ENSCATG00000031157) #15 HOXD10 (ENSCATG00000032256) #14 HOXD12 (ENSCATG00000032043) #16 HOXD13 (ENSCATG00000031889) #17 EVX2 (ENSCATG00000038250) #18 ENSCATG00000005782 LNPK (ENSCATG00000039052) #19 ENSCATG00000041432 ENSCATG00000037951 ATP5MC3 (ENSCATG00000035329) #20 ATF2 (ENSCATG00000005694) #21 ENSCATG00000035911 CHN1 (ENSCATG00000036640) #22 CHRNA1 (ENSCATG00000030584) #23 WIPF1 (ENSCATG00000022645) GPR155 (ENSCATG00000033300) #26 SCRN3 (ENSCATG00000032178) #27 CIR1 (ENSCATG00000034814) #28 SP9 (ENSCATG00000031475) ENSCATG00000031189 ENSCATG00000038920 #30 SP3 (ENSCATG00000028784) #31 ENSCATG00000036945 CDCA7 (ENSCATG00000035553) #33 MAP3K20 (ENSCATG00000038986) #35 ENSCATG00000036110 RAPGEF4 (ENSCATG00000033510) #37 PDK1 (ENSCATG00000035483) Rhinopithecus ANCESTRAL SPECIES 68 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.g.a.b #28 ENSGT00730000111135.g.b #28 ENSGT00940000162304 ENSGT00390000000673.b.d #30 ENSGT00940000155099.a #31 ENSGT00940000162422.d ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b Black snub-nosed monkey MODERN SPECIES 1870 CHN1 (ENSRBIG00000044556) #22 CHRNA1 (ENSRBIG00000024590) #23 WIPF1 (ENSRBIG00000041160) GPR155 (ENSRBIG00000027170) #26 SCRN3 (ENSRBIG00000032103) #27 ENSRBIG00000043539 #28 SP9 (ENSRBIG00000041465) OLA1 (ENSRBIG00000006151) #30 SP3 (ENSRBIG00000030644) #31 ENSRBIG00000035710 CDCA7 (ENSRBIG00000037944) #33 MAP3K20 (ENSRBIG00000032964) #35 RAPGEF4 (ENSRBIG00000042553) #37 ENSRBIG00000039311 Golden snub-nosed monkey MODERN SPECIES 2872 CHN1 (ENSRROG00000042097) #22 CHRNA1 (ENSRROG00000045787) #23 Laurasiatheria ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Eulipotyphla ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Common shrew MODERN SPECIES 1973 CHN1 (ENSSARG00000010374) #22 Hedgehog MODERN SPECIES 2653 ENSEEUG00000010428 #22 Laurasiatheria_a ANCESTRAL SPECIES 16 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Artiodactyla ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Suina DUPLICATION Suina ANCESTRAL SPECIES 3 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000010491.kb.a ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.e #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Pig MODERN SPECIES 6 HOXD1 (ENSSSCG00000015986) #9 HOXD3 (ENSSSCG00000015985) #10 HOXD4 (ENSSSCG00000015984) #11 HOXD8 (ENSSSCG00000040349) #12 HOXD9 (ENSSSCG00000015982) #13 HOXD10 (ENSSSCG00000015981) #14 HOXD11 (ENSSSCG00000034741) #15 HOXD12 (ENSSSCG00000015980) #16 HOXD13 (ENSSSCG00000057890) #17 EVX2 (ENSSSCG00000023146) #18 ENSSSCG00000053760 ENSSSCG00000039002 LNPK (ENSSSCG00000015976) #19 ATP5MC3 (ENSSSCG00000015973) #20 ATF2 (ENSSSCG00000038076) #21 ENSSSCG00000022345 #22 CHRNA1 (ENSSSCG00000015969) #23 ENSSSCG00000027348 #24 GPR155 (ENSSSCG00000015965) #26 SCRN3 (ENSSSCG00000023297) #27 CIR1 (ENSSSCG00000027516) #28 SP9 (ENSSSCG00000036172) ENSSSCG00000044710 OLA1 (ENSSSCG00000015963) #30 SP3 (ENSSSCG00000015962) #31 CDCA7 (ENSSSCG00000015961) #33 MAP3K20 (ENSSSCG00000015960) #35 ENSSSCG00000046252 RAPGEF4 (ENSSSCG00000015959) #37 PDK1 (ENSSSCG00000015958) ITGA6 (ENSSSCG00000015955) Chacoan peccary MODERN SPECIES 88 MTX2 (ENSCWAG00000000848) #8 HOXD1 (ENSCWAG00000000831) #9 HOXD3 (ENSCWAG00000000815) #10 HOXD4 (ENSCWAG00000000799) #11 HOXD8 (ENSCWAG00000000766) #12 HOXD9 (ENSCWAG00000000750) #13 HOXD10 (ENSCWAG00000000737) #14 HOXD11 (ENSCWAG00000000728) #15 HOXD12 (ENSCWAG00000000716) #16 HOXD13 (ENSCWAG00000000704) #17 EVX2 (ENSCWAG00000000686) #18 ENSCWAG00000000677 LNPK (ENSCWAG00000000637) #19 ENSCWAG00000000620 #20 ATF2 (ENSCWAG00000000507) #21 CHN1 (ENSCWAG00000000417) #22 CHRNA1 (ENSCWAG00000000173) #23 WIPF1 (ENSCWAG00000000086) GPR155 (ENSCWAG00000015434) #26 SCRN3 (ENSCWAG00000015324) #27 CIR1 (ENSCWAG00000015285) #28 SP9 (ENSCWAG00000015261) ENSCWAG00000015225 OLA1 (ENSCWAG00000015018) #30 SP3 (ENSCWAG00000014875) #31 CDCA7 (ENSCWAG00000014474) #33 MAP3K20 (ENSCWAG00000014376) #35 RAPGEF4 (ENSCWAG00000011603) #37 PDK1 (ENSCWAG00000011376) ITGA6 (ENSCWAG00000009945) DLX2 (ENSCWAG00000009801) Suina ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.f #22 Pig MODERN SPECIES 15 ULK3 (ENSSSCG00000001898) SCAMP2 (ENSSSCG00000001892) MPI (ENSSSCG00000024990) FAM219B (ENSSSCG00000029776) COX5A (ENSSSCG00000024316) RPP25 (ENSSSCG00000001888) SCAMP5 (ENSSSCG00000001887) PPCDC (ENSSSCG00000027478) ENSSSCG00000061937 C15orf39 (ENSSSCG00000001885) ENSSSCG00000041453 COMMD4 (ENSSSCG00000001884) NEIL1 (ENSSSCG00000001882) MAN2C1 (ENSSSCG00000001881) SIN3A (ENSSSCG00000001880) ENSSSCG00000032951 #22 PTPN9 (ENSSSCG00000001878) SNUPN (ENSSSCG00000001877) IMP3 (ENSSSCG00000042572) SNX33 (ENSSSCG00000001875) CSPG4 (ENSSSCG00000001873) ODF3L1 (ENSSSCG00000001879) LINGO1 (ENSSSCG00000001872) HMG20A (ENSSSCG00000001871) PEAK1 (ENSSSCG00000001869) TSPAN3 (ENSSSCG00000001868) PSTPIP1 (ENSSSCG00000001867) RCN2 (ENSSSCG00000001866) ENSSSCG00000048453 SCAPER (ENSSSCG00000001865) ISL2 (ENSSSCG00000033348) Artiodactyla_a ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Artiodactyla_b ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Pecora ANCESTRAL SPECIES 24 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Percora_a ANCESTRAL SPECIES 5 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Bovidae ANCESTRAL SPECIES 8 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Caprinae ANCESTRAL SPECIES 5 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00510000046986.x.b.b.c ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000154950.l ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Rambouillet Sheep MODERN SPECIES 11 MTX2 (ENSOARG00020000188) #8 HOXD1 (ENSOARG00020000237) #9 HOXD3 (ENSOARG00020000257) #10 HOXD4 (ENSOARG00020000275) #11 HOXD8 (ENSOARG00020000297) #12 HOXD9 (ENSOARG00020000321) #13 HOXD10 (ENSOARG00020000330) #14 hoxd11 (ENSOARG00020000346) #15 HOXD12 (ENSOARG00020000357) #16 HOXD13 (ENSOARG00020000373) #17 EVX2 (ENSOARG00020000381) #18 ENSOARG00020000394 LNPK (ENSOARG00020000416) #19 ATP5MC3 (ENSOARG00020000538) #20 ATF2 (ENSOARG00020000583) #21 CHN1 (ENSOARG00020000831) #22 ENSOARG00020001216 ENSOARG00020001229 CHRNA1 (ENSOARG00020001273) #23 ENSOARG00020001367 #24 GPR155 (ENSOARG00020001419) #26 SCRN3 (ENSOARG00020001508) #27 CIR1 (ENSOARG00020001547) #28 SP9 (ENSOARG00020001556) OLA1 (ENSOARG00020001577) #30 ENSOARG00020001636 SP3 (ENSOARG00020001657) #31 CDCA7 (ENSOARG00020001710) #33 ENSOARG00020001769 ENSOARG00020001776 MAP3K20 (ENSOARG00020001796) #35 Goat MODERN SPECIES 11 HOXD3 (ENSCHIG00000011624) #10 HOXD4 (ENSCHIG00000019702) #11 HOXD8 (ENSCHIG00000013371) #12 HOXD9 (ENSCHIG00000023245) #13 HOXD10 (ENSCHIG00000011771) #14 HOXD11 (ENSCHIG00000026087) #15 HOXD12 (ENSCHIG00000014734) #16 HOXD13 (ENSCHIG00000009994) #17 EVX2 (ENSCHIG00000026644) #18 ENSCHIG00000004992 ENSCHIG00000025787 LNPK (ENSCHIG00000012313) #19 ENSCHIG00000018041 #20 ATF2 (ENSCHIG00000011446) #21 ENSCHIG00000012635 CHN1 (ENSCHIG00000017514) #22 CHRNA1 (ENSCHIG00000018272) #23 ENSCHIG00000009043 #24 GPR155 (ENSCHIG00000024827) #26 SCRN3 (ENSCHIG00000010523) #27 CIR1 (ENSCHIG00000023936) #28 SP9 (ENSCHIG00000012561) ENSCHIG00000021711 OLA1 (ENSCHIG00000024019) #30 SP3 (ENSCHIG00000024420) #31 CDCA7 (ENSCHIG00000026797) #33 MAP3K20 (ENSCHIG00000015916) #35 RAPGEF4 (ENSCHIG00000014546) #37 ENSCHIG00000005492 PDK1 (ENSCHIG00000012161) ITGA6 (ENSCHIG00000013031) Bovinae ANCESTRAL SPECIES 5 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Bos ANCESTRAL SPECIES 6 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.`c #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 ENSGT00940000160029 Bos_b ANCESTRAL SPECIES 3 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT01030000234916.g.b ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00940000166167.b ENSGT00390000000673.b.`c #30 ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.a.a ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Cow MODERN SPECIES 11 HOXD3 (ENSBTAG00000004835) #10 HOXD4 (ENSBTAG00000039581) #11 HOXD8 (ENSBTAG00000049845) #12 HOXD9 (ENSBTAG00000016033) #13 HOXD10 (ENSBTAG00000016030) #14 HOXD11 (ENSBTAG00000033330) #15 HOXD12 (ENSBTAG00000004314) #16 HOXD13 (ENSBTAG00000004313) #17 EVX2 (ENSBTAG00000049537) #18 ENSBTAG00000002009 ENSBTAG00000050237 LNPK (ENSBTAG00000018061) #19 ENSBTAG00000031711 ATP5MC3 (ENSBTAG00000002944) #20 ATF2 (ENSBTAG00000002295) #21 CHN1 (ENSBTAG00000008028) #22 CHRNA1 (ENSBTAG00000018253) #23 WIPF1 (ENSBTAG00000001585) #24 GPR155 (ENSBTAG00000021636) #26 SCRN3 (ENSBTAG00000012966) #27 CIR1 (ENSBTAG00000038620) #28 SP9 (ENSBTAG00000014949) ENSBTAG00000052569 OLA1 (ENSBTAG00000006970) #30 ENSBTAG00000053359 SP3 (ENSBTAG00000000176) #31 ENSBTAG00000050579 CDCA7 (ENSBTAG00000003458) #33 MAP3K20 (ENSBTAG00000001083) #35 RAPGEF4 (ENSBTAG00000020984) #37 PDK1 (ENSBTAG00000016836) Hybrid Bos Indicus MODERN SPECIES 11 HOXD1 (ENSBIXG00005030413) #9 HOXD3 (ENSBIXG00005030419) #10 HOXD8 (ENSBIXG00005030431) #12 HOXD9 (ENSBIXG00005030437) #13 HOXD10 (ENSBIXG00005005289) #14 HOXD11 (ENSBIXG00005001515) #15 HOXD12 (ENSBIXG00005001517) #16 HOXD13 (ENSBIXG00005001519) #17 EVX2 (ENSBIXG00005005288) #18 ENSBIXG00005029246 ENSBIXG00005029245 LNPK (ENSBIXG00005005282) #19 ENSBIXG00005029239 ATP5MC3 (ENSBIXG00005029222) #20 ATF2 (ENSBIXG00005001719) #21 CHN1 (ENSBIXG00005001962) #22 CHRNA1 (ENSBIXG00005028981) #23 ENSBIXG00005002196 #24 GPR155 (ENSBIXG00005028873) #26 SCRN3 (ENSBIXG00005028812) #27 CIR1 (ENSBIXG00005005349) #28 SP9 (ENSBIXG00005002344) ENSBIXG00005004969 OLA1 (ENSBIXG00005028684) #30 ENSBIXG00005004930 SP3 (ENSBIXG00005005344) #31 ENSBIXG00005028515 CDCA7 (ENSBIXG00005028490) #33 MAP3K20 (ENSBIXG00005028315) #35 RAPGEF4 (ENSBIXG00005028149) #37 PDK1 (ENSBIXG00005006953) Bos_a ANCESTRAL SPECIES 4 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000153299.c.a.b.u.a ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.`c #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 ENSGT00940000160029 Domestic yak MODERN SPECIES 11 MTX2 (ENSBGRG00000017363) #8 HOXD1 (ENSBGRG00000017303) #9 HOXD3 (ENSBGRG00000017255) #10 ENSBGRG00000017167 #11 HOXD8 (ENSBGRG00000017045) #12 HOXD9 (ENSBGRG00000017014) #13 HOXD10 (ENSBGRG00000016979) #14 HOXD11 (ENSBGRG00000016923) #15 HOXD12 (ENSBGRG00000016890) #16 HOXD13 (ENSBGRG00000016836) #17 EVX2 (ENSBGRG00000016780) #18 LNPK (ENSBGRG00000016182) #19 ENSBGRG00000016132 ATP5MC3 (ENSBGRG00000016024) #20 ATF2 (ENSBGRG00000015648) #21 CHN1 (ENSBGRG00000015101) #22 CHRNA1 (ENSBGRG00000014839) #23 ENSBGRG00000014699 #24 ENSBGRG00000014674 GPR155 (ENSBGRG00000014360) #26 SCRN3 (ENSBGRG00000014271) #27 CIR1 (ENSBGRG00000014162) #28 SP9 (ENSBGRG00000014139) ENSBGRG00000013728 #30 ENSBGRG00000013676 SP3 (ENSBGRG00000013570) #31 ENSBGRG00000013535 ENSBGRG00000013492 CDCA7 (ENSBGRG00000013198) #33 MAP3K20 (ENSBGRG00000013013) #35 RAPGEF4 (ENSBGRG00000012108) #37 Wild yak MODERN SPECIES 1426 ATP5MC3 (ENSBMUG00000024987) #20 ATF2 (ENSBMUG00000024967) #21 CHN1 (ENSBMUG00000024898) #22 CHRNA1 (ENSBMUG00000024869) #23 American bison MODERN SPECIES 3320 ENSBBBG00000004376 HOXD1 (ENSBBBG00000017690) #9 HOXD3 (ENSBBBG00000017682) #10 HOXD4 (ENSBBBG00000017669) #11 HOXD8 (ENSBBBG00000017657) #12 HOXD9 (ENSBBBG00000017650) #13 HOXD10 (ENSBBBG00000006962) #14 HOXD12 (ENSBBBG00000017645) #16 HOXD13 (ENSBBBG00000017641) #17 ENSBBBG00000017638 ENSBBBG00000017634 LNPK (ENSBBBG00000017627) #19 ENSBBBG00000017593 ATP5MC3 (ENSBBBG00000017586) #20 ATF2 (ENSBBBG00000017564) #21 CHN1 (ENSBBBG00000004302) #22 CHRNA1 (ENSBBBG00000017301) #23 WIPF1 (ENSBBBG00000017196) GPR155 (ENSBBBG00000017134) #26 SCRN3 (ENSBBBG00000017011) #27 CIR1 (ENSBBBG00000016992) #28 SP9 (ENSBBBG00000016959) ENSBBBG00000004193 #30 SP3 (ENSBBBG00000016877) #31 Siberian musk deer MODERN SPECIES 343 ENSMMSG00000008131 CHN1 (ENSMMSG00000008149) #22 CHRNA1 (ENSMMSG00000008178) #23 ENSMMSG00000008236 WIPF1 (ENSMMSG00000008255) GPR155 (ENSMMSG00000008338) #26 SCRN3 (ENSMMSG00000008414) #27 CIR1 (ENSMMSG00000008433) #28 SP9 (ENSMMSG00000008454) ENSMMSG00000008479 #30 SP3 (ENSMMSG00000008721) #31 CDCA7 (ENSMMSG00000008759) #33 MAP3K20 (ENSMMSG00000008924) #35 RAPGEF4 (ENSMMSG00000009106) #37 PDK1 (ENSMMSG00000010486) ITGA6 (ENSMMSG00000010565) DLX2 (ENSMMSG00000010774) Yarkand deer MODERN SPECIES 26 MTX2 (ENSCHYG00000015392) #8 HOXD1 (ENSCHYG00000015562) #9 HOXD3 (ENSCHYG00000015650) #10 HOXD4 (ENSCHYG00000015683) #11 HOXD8 (ENSCHYG00000015741) #12 HOXD9 (ENSCHYG00000015808) #13 HOXD10 (ENSCHYG00000015831) #14 ENSCHYG00000015846 HOXD12 (ENSCHYG00000015954) #16 HOXD13 (ENSCHYG00000015985) #17 LNPK (ENSCHYG00000016125) #19 ENSCHYG00000016391 ENSCHYG00000016417 ATP5MC3 (ENSCHYG00000016464) #20 ATF2 (ENSCHYG00000016575) #21 CHN1 (ENSCHYG00000017015) #22 ENSCHYG00000017575 CHRNA1 (ENSCHYG00000017619) #23 ENSCHYG00000017877 #24 GPR155 (ENSCHYG00000018083) #26 ENSCHYG00000018263 #27 CIR1 (ENSCHYG00000018323) #28 SP9 (ENSCHYG00000018463) ENSCHYG00000018536 #30 SP3 (ENSCHYG00000019030) #31 ENSCHYG00000019193 #33 MAP3K20 (ENSCHYG00000019464) #35 RAPGEF4 (ENSCHYG00000019936) #37 PDK1 (ENSCHYG00000020641) ITGA6 (ENSCHYG00000020793) DLX2 (ENSCHYG00000021329) Cetacea ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.j #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436.e #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00960000192081 Odontoceti ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.j #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436.e #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Odontoceti_a ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.j #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436.e #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Odontoceti_b ANCESTRAL SPECIES 12 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00390000008142.t ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.j #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154733.b.d ENSGT00940000155436.e #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Monodontidae ANCESTRAL SPECIES 10 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182834.A.a.a.t ENSGT00390000008142.t ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004755.tb.a.a ENSGT00940000171387 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135.j #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154733.b.d ENSGT00940000155436.e #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Beluga whale MODERN SPECIES 84 HOXD1 (ENSDLEG00000009181) #9 HOXD3 (ENSDLEG00000009171) #10 HOXD4 (ENSDLEG00000009166) #11 HOXD8 (ENSDLEG00000009104) #12 HOXD9 (ENSDLEG00000009091) #13 HOXD10 (ENSDLEG00000009076) #14 ENSDLEG00000009052 #15 HOXD12 (ENSDLEG00000009038) #16 HOXD13 (ENSDLEG00000009014) #17 EVX2 (ENSDLEG00000008943) #18 LNPK (ENSDLEG00000008885) #19 ENSDLEG00000008854 ENSDLEG00000008837 ATP5G3 (ENSDLEG00000008800) #20 ATF2 (ENSDLEG00000008726) #21 CHN1 (ENSDLEG00000008654) #22 CHRNA1 (ENSDLEG00000008433) #23 ENSDLEG00000008360 WIPF1 (ENSDLEG00000008289) #24 GPR155 (ENSDLEG00000008209) #26 SCRN3 (ENSDLEG00000008164) #27 CIR1 (ENSDLEG00000008125) #28 SP9 (ENSDLEG00000008102) OLA1 (ENSDLEG00000018856) #30 SP3 (ENSDLEG00000018847) #31 CDCA7 (ENSDLEG00000018739) #33 MAP3K20 (ENSDLEG00000018716) #35 RAPGEF4 (ENSDLEG00000018653) #37 PDK1 (ENSDLEG00000018634) ITGA6 (ENSDLEG00000018571) DLX2 (ENSDLEG00000018558) Narwhal MODERN SPECIES 302 HOXD1 (ENSMMNG00015007440) #9 HOXD3 (ENSMMNG00015007460) #10 HOXD4 (ENSMMNG00015007477) #11 HOXD8 (ENSMMNG00015007526) #12 HOXD9 (ENSMMNG00015007556) #13 HOXD10 (ENSMMNG00015007571) #14 ENSMMNG00015007589 #15 HOXD12 (ENSMMNG00015007598) #16 HOXD13 (ENSMMNG00015007609) #17 EVX2 (ENSMMNG00015007622) #18 LNPK (ENSMMNG00015007647) #19 ENSMMNG00015007684 ENSMMNG00015007699 ATP5MC3 (ENSMMNG00015007729) #20 ATF2 (ENSMMNG00015007777) #21 CHN1 (ENSMMNG00015007913) #22 CHRNA1 (ENSMMNG00015008057) #23 ENSMMNG00015008133 ENSMMNG00015008159 GPR155 (ENSMMNG00015008223) #26 SCRN3 (ENSMMNG00015008267) #27 CIR1 (ENSMMNG00015008295) #28 SP9 (ENSMMNG00015008313) OLA1 (ENSMMNG00015008339) #30 SP3 (ENSMMNG00015008383) #31 ENSMMNG00015008402 CDCA7 (ENSMMNG00015008456) #33 MAP3K20 (ENSMMNG00015008529) #35 ENSMMNG00015008551 RAPGEF4 (ENSMMNG00015008722) #37 PDK1 (ENSMMNG00015008933) Vaquita MODERN SPECIES 18 HOXD1 (ENSPSNG00000005524) #9 HOXD3 (ENSPSNG00000005539) #10 HOXD4 (ENSPSNG00000005556) #11 HOXD8 (ENSPSNG00000005602) #12 HOXD9 (ENSPSNG00000005639) #13 HOXD10 (ENSPSNG00000005654) #14 HOXD11 (ENSPSNG00000005666) #15 HOXD12 (ENSPSNG00000005695) #16 HOXD13 (ENSPSNG00000005715) #17 EVX2 (ENSPSNG00000005734) #18 LNPK (ENSPSNG00000005786) #19 ENSPSNG00000005846 ENSPSNG00000005869 ATP5MC3 (ENSPSNG00000006024) #20 ATF2 (ENSPSNG00000006111) #21 CHN1 (ENSPSNG00000006315) #22 CHRNA1 (ENSPSNG00000006481) #23 ENSPSNG00000006539 ENSPSNG00000006580 #26 SCRN3 (ENSPSNG00000006611) #27 CIR1 (ENSPSNG00000006675) #28 SP9 (ENSPSNG00000006701) OLA1 (ENSPSNG00000006756) #30 SP3 (ENSPSNG00000006849) #31 ENSPSNG00000006879 CDCA7 (ENSPSNG00000007031) #33 MAP3K20 (ENSPSNG00000007117) #35 RAPGEF4 (ENSPSNG00000007440) #37 PDK1 (ENSPSNG00000008677) ITGA6 (ENSPSNG00000008772) DLX2 (ENSPSNG00000008884) Dolphin MODERN SPECIES 589 ATF2 (ENSTTRG00000000408) #21 CHN1 (ENSTTRG00000000406) #22 CHRNA1 (ENSTTRG00000000405) #23 Sperm whale MODERN SPECIES 11 ENSPCTG00005003466 MTX2 (ENSPCTG00005007528) #8 HOXD1 (ENSPCTG00005007516) #9 HOXD3 (ENSPCTG00005007508) #10 HOXD4 (ENSPCTG00005007493) #11 HOXD8 (ENSPCTG00005007418) #12 HOXD9 (ENSPCTG00005007399) #13 HOXD10 (ENSPCTG00005007393) #14 ENSPCTG00005007381 #15 HOXD12 (ENSPCTG00005007367) #16 HOXD13 (ENSPCTG00005007354) #17 EVX2 (ENSPCTG00005007330) #18 LNPK (ENSPCTG00005007293) #19 ATP5MC3 (ENSPCTG00005007202) #20 ATF2 (ENSPCTG00005007004) #21 CHN1 (ENSPCTG00005006263) #22 CHRNA1 (ENSPCTG00005005965) #23 ENSPCTG00005005929 WIPF1 (ENSPCTG00005005895) #24 GPR155 (ENSPCTG00005005831) #26 SCRN3 (ENSPCTG00005005779) #27 CIR1 (ENSPCTG00005005746) #28 SP9 (ENSPCTG00005005728) OLA1 (ENSPCTG00005005654) #30 ENSPCTG00005005615 SP3 (ENSPCTG00005005593) #31 ENSPCTG00005005461 #33 MAP3K20 (ENSPCTG00005005354) #35 RAPGEF4 (ENSPCTG00005004714) #37 PDK1 (ENSPCTG00005004583) ITGA6 (ENSPCTG00005004439) Blue whale MODERN SPECIES 18 ENSBMSG00010006149 MTX2 (ENSBMSG00010006100) #8 HOXD1 (ENSBMSG00010006055) #9 HOXD3 (ENSBMSG00010006046) #10 HOXD4 (ENSBMSG00010006036) #11 HOXD8 (ENSBMSG00010006022) #12 HOXD9 (ENSBMSG00010006014) #13 HOXD10 (ENSBMSG00010006002) #14 HOXD11 (ENSBMSG00010005993) #15 HOXD12 (ENSBMSG00010005987) #16 HOXD13 (ENSBMSG00010005980) #17 EVX2 (ENSBMSG00010005974) #18 LNPK (ENSBMSG00010005955) #19 ATP5MC3 (ENSBMSG00010005937) #20 ATF2 (ENSBMSG00010005883) #21 CHN1 (ENSBMSG00010005726) #22 CHRNA1 (ENSBMSG00010005615) #23 ENSBMSG00010005581 ENSBMSG00010005563 #24 GPR155 (ENSBMSG00010005540) #26 SCRN3 (ENSBMSG00010005522) #27 CIR1 (ENSBMSG00010005507) #28 SP9 (ENSBMSG00010005500) OLA1 (ENSBMSG00010005447) #30 SP3 (ENSBMSG00010021145) #31 ENSBMSG00010021109 #33 MAP3K20 (ENSBMSG00010021088) #35 RAPGEF4 (ENSBMSG00010020617) #37 PDK1 (ENSBMSG00010020497) ITGA6 (ENSBMSG00010020312) DLX2 (ENSBMSG00010020236) Camelidae ANCESTRAL SPECIES 16 ENSGT00950000182892.a.a.b ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Alpaca MODERN SPECIES 3695 LNPK (ENSVPAG00000002679) #19 ATP5MC3 (ENSVPAG00000002678) #20 ATF2 (ENSVPAG00000002676) #21 CHN1 (ENSVPAG00000002675) #22 CHRNA1 (ENSVPAG00000002672) #23 WIPF1 (ENSVPAG00000002670) Arabian camel MODERN SPECIES 31 NFE2L2 (ENSCDRG00005002588) HNRNPA3 (ENSCDRG00005002567) MTX2 (ENSCDRG00005002532) #8 HOXD3 (ENSCDRG00005002512) #10 HOXD4 (ENSCDRG00005002497) #11 HOXD8 (ENSCDRG00005002477) #12 HOXD9 (ENSCDRG00005002467) #13 HOXD10 (ENSCDRG00005002456) #14 HOXD11 (ENSCDRG00005002440) #15 HOXD12 (ENSCDRG00005002432) #16 HOXD13 (ENSCDRG00005002411) #17 EVX2 (ENSCDRG00005002358) #18 LNPK (ENSCDRG00005002325) #19 ATP5MC3 (ENSCDRG00005002307) #20 ATF2 (ENSCDRG00005002159) #21 CHN1 (ENSCDRG00005002091) #22 CHRNA1 (ENSCDRG00005001973) #23 ENSCDRG00005001936 GPR155 (ENSCDRG00005001897) #26 SCRN3 (ENSCDRG00005001860) #27 CIR1 (ENSCDRG00005001834) #28 SP9 (ENSCDRG00005001817) ENSCDRG00005001752 #30 SP3 (ENSCDRG00005001722) #31 CDCA7 (ENSCDRG00005001429) #33 MAP3K20 (ENSCDRG00005001310) #35 RAPGEF4 (ENSCDRG00005001089) #37 PDK1 (ENSCDRG00005000974) ITGA6 (ENSCDRG00005000778) DLX2 (ENSCDRG00005000738) DLX1 (ENSCDRG00005000721) Laurasiatheria_b ANCESTRAL SPECIES 16 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Carnivora ANCESTRAL SPECIES 17 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 Felidae ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.mb.a #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Panthera ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.mb.a #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Tiger MODERN SPECIES 43 NFE2L2 (ENSPTIG00000007874) HNRNPA3 (ENSPTIG00000008598) MTX2 (ENSPTIG00000011503) #8 ENSPTIG00000013485 HOXD4 (ENSPTIG00000015199) #11 ENSPTIG00000015581 #12 ENSPTIG00000006835 #13 HOXD10 (ENSPTIG00000015771) #14 HOXD13 (ENSPTIG00000016212) #17 LNPK (ENSPTIG00000016532) #19 ATP5MC3 (ENSPTIG00000016881) #20 ATF2 (ENSPTIG00000017517) #21 CHN1 (ENSPTIG00000006887) #22 CHRNA1 (ENSPTIG00000012090) #23 WIPF1 (ENSPTIG00000016801) GPR155 (ENSPTIG00000018965) #26 SCRN3 (ENSPTIG00000003437) #27 CIR1 (ENSPTIG00000008708) #28 ENSPTIG00000009967 ENSPTIG00000011872 #30 SP3 (ENSPTIG00000014294) #31 CDCA7 (ENSPTIG00000016039) #33 ENSPTIG00000019347 RAPGEF4 (ENSPTIG00000021652) #37 PDK1 (ENSPTIG00000017044) ITGA6 (ENSPTIG00000019962) ENSPTIG00000017154 METAP1D (ENSPTIG00000017545) Panthera_a ANCESTRAL SPECIES 6 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b.mb.a #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 lion MODERN SPECIES 8 ENSPLOG00000022134 MTX2 (ENSPLOG00000022148) #8 HOXD1 (ENSPLOG00000022171) #9 HOXD3 (ENSPLOG00000022176) #10 HOXD4 (ENSPLOG00000022180) #11 HOXD8 (ENSPLOG00000022192) #12 HOXD9 (ENSPLOG00000022195) #13 HOXD10 (ENSPLOG00000022198) #14 HOXD11 (ENSPLOG00000022202) #15 HOXD12 (ENSPLOG00000022207) #16 HOXD13 (ENSPLOG00000022213) #17 EVX2 (ENSPLOG00000022219) #18 LNPK (ENSPLOG00000022229) #19 ATP5MC3 (ENSPLOG00000022249) #20 ATF2 (ENSPLOG00000022276) #21 CHN1 (ENSPLOG00000022311) #22 CHRNA1 (ENSPLOG00000022353) #23 WIPF1 (ENSPLOG00000022385) ENSPLOG00000022399 ENSPLOG00000022404 GPR155 (ENSPLOG00000022420) #26 SCRN3 (ENSPLOG00000022426) #27 CIR1 (ENSPLOG00000022436) #28 ENSPLOG00000022440 SP9 (ENSPLOG00000022443) ENSPLOG00000022450 #30 SP3 (ENSPLOG00000022461) #31 CDCA7 (ENSPLOG00000022466) #33 ENSPLOG00000022477 RAPGEF4 (ENSPLOG00000022513) #37 PDK1 (ENSPLOG00000022560) leopard MODERN SPECIES 1 ENSPPRG00000022322 MTX2 (ENSPPRG00000022475) #8 HOXD1 (ENSPPRG00000023009) #9 HOXD3 (ENSPPRG00000022847) #10 HOXD4 (ENSPPRG00000022845) #11 HOXD8 (ENSPPRG00000022672) #12 HOXD9 (ENSPPRG00000000084) #13 HOXD10 (ENSPPRG00000000139) #14 HOXD11 (ENSPPRG00000000168) #15 HOXD12 (ENSPPRG00000000300) #16 HOXD13 (ENSPPRG00000000349) #17 EVX2 (ENSPPRG00000000389) #18 LNPK (ENSPPRG00000000436) #19 ATP5MC3 (ENSPPRG00000000490) #20 ATF2 (ENSPPRG00000001271) #21 CHN1 (ENSPPRG00000001854) #22 CHRNA1 (ENSPPRG00000002357) #23 WIPF1 (ENSPPRG00000002779) ENSPPRG00000002818 GPR155 (ENSPPRG00000003324) #26 SCRN3 (ENSPPRG00000003477) #27 CIR1 (ENSPPRG00000003553) #28 SP9 (ENSPPRG00000003658) ENSPPRG00000004233 #30 ENSPPRG00000004311 SP3 (ENSPPRG00000004464) #31 CDCA7 (ENSPPRG00000005021) #33 MAP3K20 (ENSPPRG00000005621) #35 RAPGEF4 (ENSPPRG00000006832) #37 PDK1 (ENSPPRG00000007221) ITGA6 (ENSPPRG00000008496) Cat MODERN SPECIES 239 HNRNPA3 (ENSFCAG00000012146) MTX2 (ENSFCAG00000030099) #8 HOXD1 (ENSFCAG00000042171) #9 HOXD3 (ENSFCAG00000022371) #10 HOXD4 (ENSFCAG00000045772) #11 HOXD8 (ENSFCAG00000034788) #12 HOXD9 (ENSFCAG00000035038) #13 HOXD10 (ENSFCAG00000006264) #14 HOXD11 (ENSFCAG00000030594) #15 HOXD12 (ENSFCAG00000044671) #16 HOXD13 (ENSFCAG00000030694) #17 EVX2 (ENSFCAG00000023892) #18 LNPK (ENSFCAG00000033171) #19 ATP5MC3 (ENSFCAG00000012719) #20 ATF2 (ENSFCAG00000027595) #21 CHN1 (ENSFCAG00000039893) #22 CHRNA1 (ENSFCAG00000014103) #23 WIPF1 (ENSFCAG00000014400) ENSFCAG00000034843 GPR155 (ENSFCAG00000000439) #26 SCRN3 (ENSFCAG00000022042) #27 CIR1 (ENSFCAG00000022845) #28 SP9 (ENSFCAG00000044908) ENSFCAG00000036661 #30 SP3 (ENSFCAG00000030033) #31 CDCA7 (ENSFCAG00000005476) #33 ENSFCAG00000008059 RAPGEF4 (ENSFCAG00000008057) #37 PDK1 (ENSFCAG00000031620) ITGA6 (ENSFCAG00000000430) DLX2 (ENSFCAG00000038170) Caniformia ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 Canidae DUPLICATION Canidae DUPLICATION Canidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.g.a #22 Canis_lupus ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.g.a #22 Dingo MODERN SPECIES 347 RNF128 (ENSCAFG00020006883) RADX (ENSCAFG00020006912) ENSCAFG00020006937 ENSCAFG00020006940 ENSCAFG00020006941 PWWP3B (ENSCAFG00020006943) ENSCAFG00020006950 SERPINA7 (ENSCAFG00020006955) ENSCAFG00020006962 ENSCAFG00020006969 ENSCAFG00020006976 ENSCAFG00020006980 ENSCAFG00020006982 FAM199X (ENSCAFG00020006986) ENSCAFG00020006988 ENSCAFG00020006993 #22 ENSCAFG00020006998 SLC25A53 (ENSCAFG00020007000) RAB9B (ENSCAFG00020007003) PLP1 (ENSCAFG00020007005) ENSCAFG00020007048 TMEM31 (ENSCAFG00020007068) MORF4L2 (ENSCAFG00020007074) TCEAL1 (ENSCAFG00020007078) ENSCAFG00020007084 ENSCAFG00020007092 ENSCAFG00020007117 BEX3 (ENSCAFG00020007120) TCEAL7 (ENSCAFG00020007121) ENSCAFG00020007123 ENSCAFG00020007128 Canidae ANCESTRAL SPECIES 45 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.i #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.g.b #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Red fox DUPLICATION Red fox MODERN SPECIES 15 NFE2L2 (ENSVVUG00000012641) ENSVVUG00000012651 ENSVVUG00000012682 #8 ENSVVUG00000012694 HOXD3 (ENSVVUG00000012700) #10 HOXD8 (ENSVVUG00000012714) #12 ENSVVUG00000012717 #13 HOXD10 (ENSVVUG00000012722) #14 ENSVVUG00000012726 #15 HOXD12 (ENSVVUG00000012731) #16 HOXD13 (ENSVVUG00000012734) #17 EVX2 (ENSVVUG00000012735) #18 LNPK (ENSVVUG00000012737) #19 ATP5MC3 (ENSVVUG00000012759) #20 ATF2 (ENSVVUG00000012774) #21 CHN1 (ENSVVUG00000012819) #22 CHRNA1 (ENSVVUG00000012830) #23 WIPF1 (ENSVVUG00000012885) ENSVVUG00000012900 GPR155 (ENSVVUG00000012912) #26 SCRN3 (ENSVVUG00000012946) #27 CIR1 (ENSVVUG00000012957) #28 SP9 (ENSVVUG00000012965) ENSVVUG00000012991 #30 SP3 (ENSVVUG00000013719) #31 ENSVVUG00000013736 CDCA7 (ENSVVUG00000013756) #33 ENSVVUG00000013763 MAP3K20 (ENSVVUG00000013771) RAPGEF4 (ENSVVUG00000013779) #37 PDK1 (ENSVVUG00000013800) Red fox MODERN SPECIES 308 ESX1 (ENSVVUG00000004243) FAM199X (ENSVVUG00000004255) ENSVVUG00000004266 #22 ENSVVUG00000004271 ENSVVUG00000004283 ENSVVUG00000004288 ENSVVUG00000004295 SLC25A53 (ENSVVUG00000004298) Canis_lupus ANCESTRAL SPECIES 39 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.i #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.g.b #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000175090 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Dingo DUPLICATION Dingo MODERN SPECIES 339 HOXD1 (ENSCAFG00020006270) #9 HOXD3 (ENSCAFG00020006263) #10 HOXD4 (ENSCAFG00020006256) #11 HOXD8 (ENSCAFG00020006244) #12 HOXD10 (ENSCAFG00020006239) #14 HOXD11 (ENSCAFG00020006229) #15 HOXD9 (ENSCAFG00020006227) #13 HOXD12 (ENSCAFG00020006216) #16 HOXD13 (ENSCAFG00020006212) #17 EVX2 (ENSCAFG00020006206) #18 LNPK (ENSCAFG00020006192) #19 ENSCAFG00020006176 ENSCAFG00020006151 #20 ATF2 (ENSCAFG00020006131) #21 ENSCAFG00020006118 #22 ENSCAFG00020006110 #22 CHRNA1 (ENSCAFG00020006081) #23 ENSCAFG00020006077 WIPF1 (ENSCAFG00020006074) ENSCAFG00020006068 GPR155 (ENSCAFG00020005897) #26 SCRN3 (ENSCAFG00020005876) #27 CIR1 (ENSCAFG00020005869) #28 SP9 (ENSCAFG00020005867) OLA1 (ENSCAFG00020005038) #30 SP3 (ENSCAFG00020004982) #31 CDCA7 (ENSCAFG00020004971) #33 ENSCAFG00020004969 ENSCAFG00020004961 RAPGEF4 (ENSCAFG00020004415) #37 PDK1 (ENSCAFG00020004348) Dingo MODERN SPECIES 339 MTX2 (ENSCAFG00020006273) #8 HOXD1 (ENSCAFG00020006270) #9 HOXD3 (ENSCAFG00020006263) #10 HOXD4 (ENSCAFG00020006256) #11 HOXD8 (ENSCAFG00020006244) #12 HOXD10 (ENSCAFG00020006239) #14 HOXD11 (ENSCAFG00020006229) #15 HOXD9 (ENSCAFG00020006227) #13 HOXD12 (ENSCAFG00020006216) #16 HOXD13 (ENSCAFG00020006212) #17 EVX2 (ENSCAFG00020006206) #18 LNPK (ENSCAFG00020006192) #19 ENSCAFG00020006176 ENSCAFG00020006151 #20 ATF2 (ENSCAFG00020006131) #21 ENSCAFG00020006118 #22 ENSCAFG00020006110 #22 CHRNA1 (ENSCAFG00020006081) #23 ENSCAFG00020006077 WIPF1 (ENSCAFG00020006074) ENSCAFG00020006068 GPR155 (ENSCAFG00020005897) #26 SCRN3 (ENSCAFG00020005876) #27 CIR1 (ENSCAFG00020005869) #28 SP9 (ENSCAFG00020005867) OLA1 (ENSCAFG00020005038) #30 SP3 (ENSCAFG00020004982) #31 CDCA7 (ENSCAFG00020004971) #33 ENSCAFG00020004969 ENSCAFG00020004961 RAPGEF4 (ENSCAFG00020004415) #37 Dog MODERN SPECIES 29 HNRNPA3 (ENSCAFG00845019864) MTX2 (ENSCAFG00845019381) #8 HOXD1 (ENSCAFG00845019313) #9 HOXD3 (ENSCAFG00845019275) #10 HOXD4 (ENSCAFG00845019072) #11 HOXD10 (ENSCAFG00845019028) #14 HOXD9 (ENSCAFG00845018856) #13 ENSCAFG00845018802 #15 HOXD12 (ENSCAFG00845018775) #16 HOXD13 (ENSCAFG00845018741) #17 EVX2 (ENSCAFG00845018704) #18 LNPK (ENSCAFG00845018510) #19 ENSCAFG00845018368 ATP5MC3 (ENSCAFG00845018248) #20 ATF2 (ENSCAFG00845017708) #21 CHN1 (ENSCAFG00845017147) #22 CHRNA1 (ENSCAFG00845016336) #23 WIPF1 (ENSCAFG00845016036) ENSCAFG00845015883 GPR155 (ENSCAFG00845015821) #26 SCRN3 (ENSCAFG00845015754) #27 CIR1 (ENSCAFG00845015697) #28 SP9 (ENSCAFG00845029658) OLA1 (ENSCAFG00845029594) #30 SP3 (ENSCAFG00845029530) #31 ENSCAFG00845029341 #33 MAP3K20 (ENSCAFG00845029200) #35 RAPGEF4 (ENSCAFG00845028929) #37 PDK1 (ENSCAFG00845028798) ITGA6 (ENSCAFG00845028626) ENSCAFG00845028527 Canidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.h #22 Canis_lupus ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.h #22 Dog MODERN SPECIES 144 CLDN2 (ENSCAFG00845017181) ENSCAFG00845017120 TBC1D8B (ENSCAFG00845016942) RNF128 (ENSCAFG00845016725) RADX (ENSCAFG00845016635) ENSCAFG00845016546 PWWP3B (ENSCAFG00845016500) ENSCAFG00845016460 SERPINA7 (ENSCAFG00845016407) NRK (ENSCAFG00845016215) IL1RAPL2 (ENSCAFG00845016119) ENSCAFG00845016080 ESX1 (ENSCAFG00845015935) FAM199X (ENSCAFG00845015897) ENSCAFG00845024263 ENSCAFG00845024204 #22 ENSCAFG00845024140 SLC25A53 (ENSCAFG00845024107) ENSCAFG00845024075 ENSCAFG00845023955 RAB9B (ENSCAFG00845023869) PLP1 (ENSCAFG00845023800) TMEM31 (ENSCAFG00845023755) GLRA4 (ENSCAFG00845023613) MORF4L2 (ENSCAFG00845023564) TCEAL1 (ENSCAFG00845023525) ENSCAFG00845023485 ENSCAFG00845023442 ENSCAFG00845023312 ENSCAFG00845023198 TCEAL8 (ENSCAFG00845023168) Caniformia_b ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b Mustelinae ANCESTRAL SPECIES 21 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 American mink MODERN SPECIES 106 ENSNVIG00000009098 ENSNVIG00000009049 #20 ENSNVIG00000009030 ATF2 (ENSNVIG00000008881) #21 ENSNVIG00000008866 CHN1 (ENSNVIG00000008762) #22 CHRNA1 (ENSNVIG00000008699) #23 ENSNVIG00000008567 #24 GPR155 (ENSNVIG00000008500) #26 SCRN3 (ENSNVIG00000008489) #27 CIR1 (ENSNVIG00000008463) #28 SP9 (ENSNVIG00000008457) OLA1 (ENSNVIG00000008347) #30 SP3 (ENSNVIG00000008326) #31 ENSNVIG00000008301 CDCA7 (ENSNVIG00000008173) #33 ENSNVIG00000008110 RAPGEF4 (ENSNVIG00000007561) #37 PDK1 (ENSNVIG00000007527) ITGA6 (ENSNVIG00000007078) DLX2 (ENSNVIG00000007019) Ferret MODERN SPECIES 359 HOXD1 (ENSMPUG00000014084) #9 ENSMPUG00000014080 HOXD3 (ENSMPUG00000014072) #10 HOXD4 (ENSMPUG00000014070) #11 ENSMPUG00000014067 ENSMPUG00000014060 #12 HOXD9 (ENSMPUG00000014053) #13 HOXD10 (ENSMPUG00000014049) #14 HOXD11 (ENSMPUG00000014029) #15 HOXD12 (ENSMPUG00000014025) #16 HOXD13 (ENSMPUG00000014022) #17 EVX2 (ENSMPUG00000014012) #18 LNPK (ENSMPUG00000014007) #19 ATP5MC3 (ENSMPUG00000013986) #20 ATF2 (ENSMPUG00000013983) #21 CHN1 (ENSMPUG00000013977) #22 CHRNA1 (ENSMPUG00000013974) #23 ENSMPUG00000013967 #24 GPR155 (ENSMPUG00000013963) #26 SCRN3 (ENSMPUG00000013961) #27 ENSMPUG00000013943 #28 ENSMPUG00000013940 ENSMPUG00000013934 SP9 (ENSMPUG00000013931) OLA1 (ENSMPUG00000013906) #30 SP3 (ENSMPUG00000013903) #31 Ursidae ANCESTRAL SPECIES 7 ENSGT00940000153147.m.a.a.a.b.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.m.b #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000005254.i.a.b ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Giant Panda MODERN SPECIES 11 ENSAMEG00000019906 MTX2 (ENSAMEG00000001799) #8 HOXD1 (ENSAMEG00000028345) #9 HOXD3 (ENSAMEG00000026957) #10 HOXD4 (ENSAMEG00000025663) #11 HOXD8 (ENSAMEG00000023565) #12 HOXD9 (ENSAMEG00000029987) #13 HOXD10 (ENSAMEG00000001849) #14 ENSAMEG00000025193 #15 HOXD12 (ENSAMEG00000023609) #16 HOXD13 (ENSAMEG00000001865) #17 EVX2 (ENSAMEG00000001868) #18 LNPK (ENSAMEG00000001869) #19 ATP5MC3 (ENSAMEG00000012367) #20 ATF2 (ENSAMEG00000012333) #21 CHN1 (ENSAMEG00000012304) #22 CHRNA1 (ENSAMEG00000012277) #23 WIPF1 (ENSAMEG00000012269) ENSAMEG00000027164 GPR155 (ENSAMEG00000012251) #26 SCRN3 (ENSAMEG00000012230) #27 CIR1 (ENSAMEG00000012211) #28 SP9 (ENSAMEG00000028382) ENSAMEG00000025792 OLA1 (ENSAMEG00000012204) #30 ENSAMEG00000024507 SP3 (ENSAMEG00000000258) #31 ENSAMEG00000028241 ENSAMEG00000000267 #33 ENSAMEG00000000282 RAPGEF4 (ENSAMEG00000000315) #37 Ursus ANCESTRAL SPECIES 4 ENSGT00940000153147.m.a.a.a.b.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.m.b #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00910000147479.a.b ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000005254.i.a.b ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Polar bear MODERN SPECIES 142 OSBPL6 (ENSUMAG00000016519) RBM45 (ENSUMAG00000016503) PDE11A (ENSUMAG00000016414) ENSUMAG00000016390 AGPS (ENSUMAG00000015781) NFE2L2 (ENSUMAG00000015689) ENSUMAG00000015686 MTX2 (ENSUMAG00000015662) #8 HOXD4 (ENSUMAG00000015658) #11 ENSUMAG00000015653 #12 HOXD10 (ENSUMAG00000015650) #14 ENSUMAG00000015649 #15 LNPK (ENSUMAG00000015613) #19 ATP5MC3 (ENSUMAG00000015579) #20 ATF2 (ENSUMAG00000015564) #21 CHN1 (ENSUMAG00000015511) #22 CHRNA1 (ENSUMAG00000015480) #23 ENSUMAG00000015473 ENSUMAG00000015461 GPR155 (ENSUMAG00000015425) #26 SCRN3 (ENSUMAG00000015422) #27 CIR1 (ENSUMAG00000015415) #28 ENSUMAG00000015413 OLA1 (ENSUMAG00000015410) #30 SP3 (ENSUMAG00000015395) #31 ENSUMAG00000015375 CDCA7 (ENSUMAG00000015367) #33 ENSUMAG00000015337 #35 RAPGEF4 (ENSUMAG00000015328) #37 PDK1 (ENSUMAG00000015250) ITGA6 (ENSUMAG00000014604) American black bear MODERN SPECIES 1124 CHN1 (ENSUAMG00000006177) #22 ENSUAMG00000006180 CHRNA1 (ENSUAMG00000006186) #23 WIPF1 (ENSUAMG00000006198) ENSUAMG00000006207 GPR155 (ENSUAMG00000006210) #26 SCRN3 (ENSUAMG00000006214) #27 Laurasiatheria_c ANCESTRAL SPECIES 18 ENSGT00940000153147.m.a.a.a.b.a.b ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Equus ANCESTRAL SPECIES 18 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000005569.x.a.a.b ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Donkey MODERN SPECIES 24 MTX2 (ENSEASG00005022537) #8 HOXD1 (ENSEASG00005030887) #9 HOXD3 (ENSEASG00005022544) #10 HOXD4 (ENSEASG00005024806) #11 HOXD8 (ENSEASG00005033905) #12 HOXD9 (ENSEASG00005023994) #13 HOXD10 (ENSEASG00005022552) #14 HOXD11 (ENSEASG00005030904) #15 HOXD12 (ENSEASG00005022555) #16 HOXD13 (ENSEASG00005029242) #17 EVX2 (ENSEASG00005022562) #18 ENSEASG00005022564 LNPK (ENSEASG00005022567) #19 ATP5MC3 (ENSEASG00005022573) #20 ATF2 (ENSEASG00005022575) #21 CHN1 (ENSEASG00005022579) #22 CHRNA1 (ENSEASG00005022581) #23 WIPF1 (ENSEASG00005022583) GPR155 (ENSEASG00005022591) #26 SCRN3 (ENSEASG00005022597) #27 CIR1 (ENSEASG00005022598) #28 SP9 (ENSEASG00005022600) OLA1 (ENSEASG00005022603) #30 SP3 (ENSEASG00005022608) #31 CDCA7 (ENSEASG00005022615) #33 ENSEASG00005034775 ENSEASG00005022618 #35 RAPGEF4 (ENSEASG00005022625) #37 PDK1 (ENSEASG00005022633) ITGA6 (ENSEASG00005022636) DLX2 (ENSEASG00005022641) Horse MODERN SPECIES 9 HNRNPA3 (ENSECAG00000059976) MTX2 (ENSECAG00000022464) #8 HOXD1 (ENSECAG00000035437) #9 HOXD3 (ENSECAG00000022129) #10 HOXD4 (ENSECAG00000038429) #11 HOXD8 (ENSECAG00000021980) #12 HOXD9 (ENSECAG00000021845) #13 HOXD10 (ENSECAG00000020599) #14 HOXD11 (ENSECAG00000003045) #15 HOXD13 (ENSECAG00000020388) #17 EVX2 (ENSECAG00000019796) #18 ENSECAG00000043913 LNPK (ENSECAG00000008534) #19 ATP5MC3 (ENSECAG00000008514) #20 ATF2 (ENSECAG00000018723) #21 CHN1 (ENSECAG00000008277) #22 CHRNA1 (ENSECAG00000019649) #23 WIPF1 (ENSECAG00000015984) #24 GPR155 (ENSECAG00000008471) #26 SCRN3 (ENSECAG00000018530) #27 CIR1 (ENSECAG00000006773) #28 SP9 (ENSECAG00000028902) OLA1 (ENSECAG00000016353) #30 SP3 (ENSECAG00000013930) #31 CDCA7 (ENSECAG00000011492) #33 ENSECAG00000000477 RAPGEF4 (ENSECAG00000017755) #37 PDK1 (ENSECAG00000006213) ITGA6 (ENSECAG00000001652) DLX2 (ENSECAG00000000452) DLX1 (ENSECAG00000024861) Chiroptera ANCESTRAL SPECIES 11 ENSGT00940000153147.m.a.a.a.b.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Megabat MODERN SPECIES 854 CHN1 (ENSPVAG00000004165) #22 CHRNA1 (ENSPVAG00000004164) #23 Microchiroptera ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Greater horseshoe bat MODERN SPECIES 26 ENSRFEG00010022161 MTX2 (ENSRFEG00010022163) #8 HOXD1 (ENSRFEG00010022164) #9 HOXD3 (ENSRFEG00010022165) #10 HOXD4 (ENSRFEG00010022166) #11 HOXD8 (ENSRFEG00010022168) #12 HOXD9 (ENSRFEG00010022169) #13 HOXD10 (ENSRFEG00010022170) #14 HOXD11 (ENSRFEG00010022171) #15 HOXD12 (ENSRFEG00010022172) #16 HOXD13 (ENSRFEG00010022173) #17 EVX2 (ENSRFEG00010000230) #18 LNPK (ENSRFEG00010000270) #19 ENSRFEG00010000353 #20 ATF2 (ENSRFEG00010000479) #21 CHN1 (ENSRFEG00010000595) #22 CHRNA1 (ENSRFEG00010000686) #23 WIPF1 (ENSRFEG00010000762) GPR155 (ENSRFEG00010000805) #26 SCRN3 (ENSRFEG00010000835) #27 CIR1 (ENSRFEG00010000863) #28 SP9 (ENSRFEG00010000885) ENSRFEG00010000897 OLA1 (ENSRFEG00010000935) #30 SP3 (ENSRFEG00010000991) #31 CDCA7 (ENSRFEG00010001045) #33 ENSRFEG00010001183 RAPGEF4 (ENSRFEG00010001360) #37 ENSRFEG00010001688 PDK1 (ENSRFEG00010001709) ITGA6 (ENSRFEG00010001783) Microbat MODERN SPECIES 942 ENSMLUG00000003906 MTX2 (ENSMLUG00000015966) #8 ENSMLUG00000029447 #9 HOXD3 (ENSMLUG00000012510) #10 HOXD4 (ENSMLUG00000012508) #11 HOXD8 (ENSMLUG00000028864) #12 HOXD10 (ENSMLUG00000007048) #14 HOXD11 (ENSMLUG00000007030) #15 HOXD12 (ENSMLUG00000007009) #16 HOXD13 (ENSMLUG00000006997) #17 EVX2 (ENSMLUG00000006989) #18 ENSMLUG00000022478 LNPK (ENSMLUG00000006972) #19 ENSMLUG00000012822 #20 ATF2 (ENSMLUG00000015718) #21 CHN1 (ENSMLUG00000015709) #22 CHRNA1 (ENSMLUG00000015698) #23 WIPF1 (ENSMLUG00000022385) GPR155 (ENSMLUG00000013828) #26 SCRN3 (ENSMLUG00000013823) #27 CIR1 (ENSMLUG00000013807) #28 ENSMLUG00000025196 #30 SP3 (ENSMLUG00000006791) #31 CDCA7 (ENSMLUG00000006634) #33 ENSMLUG00000006601 ENSMLUG00000005569 #37 ENSMLUG00000030219 #37 PDK1 (ENSMLUG00000005562) ITGA6 (ENSMLUG00000005550) HAT1 (ENSMLUG00000017163) DLX2 (ENSMLUG00000025271) Atlantogenata ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Xenarthra ANCESTRAL SPECIES 11 ENSGT00950000182892.a.a.b ENSGT00940000153147.m.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 Sloth MODERN SPECIES 2277 CHN1 (ENSCHOG00000003425) #22 Armadillo MODERN SPECIES 3580 HNRNPA3 (ENSDNOG00000019022) MTX2 (ENSDNOG00000034659) #8 HOXD1 (ENSDNOG00000019807) #9 HOXD3 (ENSDNOG00000035593) #10 HOXD4 (ENSDNOG00000019805) #11 HOXD8 (ENSDNOG00000036145) #12 HOXD10 (ENSDNOG00000034389) #14 HOXD11 (ENSDNOG00000044260) #15 HOXD12 (ENSDNOG00000047700) #16 HOXD13 (ENSDNOG00000019799) #17 EVX2 (ENSDNOG00000019797) #18 ENSDNOG00000045361 LNPK (ENSDNOG00000039308) #19 ENSDNOG00000044678 #20 ATF2 (ENSDNOG00000015229) #21 CHN1 (ENSDNOG00000037568) #22 CHRNA1 (ENSDNOG00000016153) #23 ENSDNOG00000033898 ENSDNOG00000041872 #24 GPR155 (ENSDNOG00000007590) #26 SCRN3 (ENSDNOG00000035179) #27 CIR1 (ENSDNOG00000033913) #28 SP9 (ENSDNOG00000019150) OLA1 (ENSDNOG00000010630) #30 ENSDNOG00000044516 SP3 (ENSDNOG00000048996) #31 CDCA7 (ENSDNOG00000019442) #33 MAP3K20 (ENSDNOG00000006902) #35 RAPGEF4 (ENSDNOG00000006875) #37 Afrotheria ANCESTRAL SPECIES 1 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.e #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Tenrec MODERN SPECIES 2549 CHN1 (ENSETEG00000012365) #22 Afrotheria_a ANCESTRAL SPECIES 1 ENSGT00950000182892.a.a.b ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.e #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Elephant MODERN SPECIES 301 AGPS (ENSLAFG00000014990) NFE2L2 (ENSLAFG00000016263) ENSLAFG00000027712 MTX2 (ENSLAFG00000013982) #8 HOXD3 (ENSLAFG00000005477) #10 HOXD4 (ENSLAFG00000005480) #11 HOXD8 (ENSLAFG00000004364) #12 HOXD9 (ENSLAFG00000011494) #13 HOXD10 (ENSLAFG00000013262) #14 HOXD12 (ENSLAFG00000017497) #16 HOXD13 (ENSLAFG00000027629) #17 EVX2 (ENSLAFG00000013264) #18 LNPK (ENSLAFG00000004502) #19 ENSLAFG00000010768 #20 ATF2 (ENSLAFG00000006463) #21 CHN1 (ENSLAFG00000011074) #22 CHRNA1 (ENSLAFG00000011067) #23 WIPF1 (ENSLAFG00000028992) GPR155 (ENSLAFG00000010245) #26 SCRN3 (ENSLAFG00000010241) #27 CIR1 (ENSLAFG00000010236) #28 SP9 (ENSLAFG00000026573) OLA1 (ENSLAFG00000002706) #30 ENSLAFG00000032705 SP3 (ENSLAFG00000013121) #31 CDCA7 (ENSLAFG00000013007) #33 ENSLAFG00000002511 ENSLAFG00000017140 RAPGEF4 (ENSLAFG00000009822) #37 PDK1 (ENSLAFG00000004732) ITGA6 (ENSLAFG00000004724) Hyrax MODERN SPECIES 2846 ENSPCAG00000002371 #22 CHRNA1 (ENSPCAG00000002316) #23 Marsupialia ANCESTRAL SPECIES 5 ENSGT00950000182919.C.k #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Marsupialia_b ANCESTRAL SPECIES 3 ENSGT00950000182919.C.k #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Diprotodontia ANCESTRAL SPECIES 11 ENSGT00950000182919.C.k #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00570000080031 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Diprotodontia_a ANCESTRAL SPECIES 9 ENSGT00950000182919.C.k.a #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00940000173501 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Common wonbat MODERN SPECIES 1018 ENSVURG00010019134 ENSVURG00010019141 #8 HOXD1 (ENSVURG00010019147) #9 HOXD3 (ENSVURG00010019148) #10 HOXD4 (ENSVURG00010019150) #11 HOXD8 (ENSVURG00010019156) #12 HOXD9 (ENSVURG00010019159) #13 HOXD10 (ENSVURG00010019165) #14 ENSVURG00010019168 #15 HOXD12 (ENSVURG00010019173) #16 HOXD13 (ENSVURG00010019176) #17 EVX2 (ENSVURG00010019179) #18 LNPK (ENSVURG00010019192) #19 ENSVURG00010019213 #20 ATF2 (ENSVURG00010019225) #21 CHN1 (ENSVURG00010019258) #22 CHRNA1 (ENSVURG00010019276) #23 WIPF1 (ENSVURG00010019295) GPR155 (ENSVURG00010019311) #26 SCRN3 (ENSVURG00010019366) #27 CIR1 (ENSVURG00010019374) #28 SP9 (ENSVURG00010019382) OLA1 (ENSVURG00010019396) #30 SP3 (ENSVURG00010019427) #31 ENSVURG00010019448 #33 MAP3K20 (ENSVURG00010019465) #35 RAPGEF4 (ENSVURG00010019514) #37 PDK1 (ENSVURG00010019726) ITGA6 (ENSVURG00010019751) DLX2 (ENSVURG00010019774) DLX1 (ENSVURG00010019779) koala MODERN SPECIES 40 MTX2 (ENSPCIG00000006277) #8 HOXD1 (ENSPCIG00000026501) #9 HOXD4 (ENSPCIG00000026503) #11 HOXD3 (ENSPCIG00000026502) #10 HOXD8 (ENSPCIG00000029145) #12 HOXD9 (ENSPCIG00000033878) #13 HOXD10 (ENSPCIG00000029143) #14 ENSPCIG00000034132 #15 HOXD12 (ENSPCIG00000029141) #16 HOXD13 (ENSPCIG00000029140) #17 EVX2 (ENSPCIG00000029139) #18 ENSPCIG00000034586 LNPK (ENSPCIG00000029137) #19 ENSPCIG00000026281 #20 ATF2 (ENSPCIG00000026284) #21 CHN1 (ENSPCIG00000026288) #22 CHRNA1 (ENSPCIG00000026290) #23 ENSPCIG00000034435 WIPF1 (ENSPCIG00000026292) GPR155 (ENSPCIG00000026300) #26 ENSPCIG00000027329 SCRN3 (ENSPCIG00000027336) #27 CIR1 (ENSPCIG00000027338) #28 SP9 (ENSPCIG00000027340) OLA1 (ENSPCIG00000026763) #30 SP3 (ENSPCIG00000016653) #31 CDCA7 (ENSPCIG00000022203) #33 MAP3K20 (ENSPCIG00000022211) #35 RAPGEF4 (ENSPCIG00000028745) #37 PDK1 (ENSPCIG00000022240) ITGA6 (ENSPCIG00000022252) Wallaby MODERN SPECIES 3462 ENSMEUG00000008006 #22 Tasmanian devil MODERN SPECIES 2 HNRNPA3 (ENSSHAG00000022116) MTX2 (ENSSHAG00000016381) #8 HOXD1 (ENSSHAG00000016187) #9 HOXD4 (ENSSHAG00000024760) #11 HOXD3 (ENSSHAG00000024332) #10 HOXD8 (ENSSHAG00000026470) #12 HOXD9 (ENSSHAG00000021426) #13 HOXD10 (ENSSHAG00000016004) #14 HOXD11 (ENSSHAG00000021515) #15 HOXD12 (ENSSHAG00000021387) #16 HOXD13 (ENSSHAG00000015915) #17 EVX2 (ENSSHAG00000015873) #18 LNPK (ENSSHAG00000031133) #19 ATP5MC3 (ENSSHAG00000028674) #20 ATF2 (ENSSHAG00000029247) #21 CHN1 (ENSSHAG00000008483) #22 CHRNA1 (ENSSHAG00000007749) #23 WIPF1 (ENSSHAG00000005304) GPR155 (ENSSHAG00000001210) #26 SCRN3 (ENSSHAG00000015809) #27 CIR1 (ENSSHAG00000015674) #28 SP9 (ENSSHAG00000022043) OLA1 (ENSSHAG00000020604) #30 ENSSHAG00000013923 #31 ENSSHAG00000024673 ENSSHAG00000012578 ENSSHAG00000010185 #33 MAP3K20 (ENSSHAG00000008034) #35 RAPGEF4 (ENSSHAG00000006723) #37 PDK1 (ENSSHAG00000017496) ITGA6 (ENSSHAG00000017311) Opossum MODERN SPECIES 3 MTX2 (ENSMODG00000009617) #8 HOXD1 (ENSMODG00000009604) #9 HOXD3 (ENSMODG00000046524) #10 HOXD4 (ENSMODG00000009598) #11 HOXD8 (ENSMODG00000009593) #12 HOXD9 (ENSMODG00000009591) #13 HOXD10 (ENSMODG00000009577) #14 HOXD11 (ENSMODG00000009565) #15 HOXD12 (ENSMODG00000024741) #16 HOXD13 (ENSMODG00000009550) #17 EVX2 (ENSMODG00000009546) #18 ENSMODG00000009536 #19 ENSMODG00000047401 ENSMODG00000009520 #20 ATF2 (ENSMODG00000009514) #21 CHN1 (ENSMODG00000009464) #22 CHRNA1 (ENSMODG00000009414) #23 WIPF1 (ENSMODG00000009366) GPR155 (ENSMODG00000009362) #26 SCRN3 (ENSMODG00000009337) #27 CIR1 (ENSMODG00000037714) #28 SP9 (ENSMODG00000009303) OLA1 (ENSMODG00000009296) #30 SP3 (ENSMODG00000009184) #31 ENSMODG00000024765 CDCA7 (ENSMODG00000009162) #33 MAP3K20 (ENSMODG00000009134) #35 RAPGEF4 (ENSMODG00000009089) #37 ENSMODG00000009035 ITGA6 (ENSMODG00000009009) DLX2 (ENSMODG00000008899) Platypus MODERN SPECIES 20 HNRNPA3 (ENSOANG00000008622) MTX2 (ENSOANG00000008621) #8 HOXD1 (ENSOANG00000043961) #9 HOXD3 (ENSOANG00000038024) #10 HOXD4 (ENSOANG00000037495) #11 HOXD8 (ENSOANG00000036079) #12 HOXD9 (ENSOANG00000008615) #13 HOXD10 (ENSOANG00000037187) #14 HOXD11 (ENSOANG00000048827) #15 HOXD12 (ENSOANG00000004743) #16 HOXD13 (ENSOANG00000043790) #17 EVX2 (ENSOANG00000042825) #18 LNPK (ENSOANG00000008614) #19 ATP5MC3 (ENSOANG00000046084) #20 ATF2 (ENSOANG00000008612) #21 CHN1 (ENSOANG00000008609) #22 CHRNA1 (ENSOANG00000008607) #23 ENSOANG00000008606 #24 GPR155 (ENSOANG00000008605) #26 SCRN3 (ENSOANG00000008604) #27 CIR1 (ENSOANG00000037110) #28 SP9 (ENSOANG00000036313) OLA1 (ENSOANG00000008601) #30 SP3 (ENSOANG00000008599) #31 CDCA7 (ENSOANG00000008596) #33 MAP3K20 (ENSOANG00000008595) RAPGEF4 (ENSOANG00000008592) #37 ENSOANG00000008591 ITGA6 (ENSOANG00000008589) DLX2 (ENSOANG00000008584) DLX1 (ENSOANG00000045199) Sauria ANCESTRAL SPECIES ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 Archelosauria ANCESTRAL SPECIES 8 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 Archosauria ANCESTRAL SPECIES 6 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 Aves ANCESTRAL SPECIES 8 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Neognathae ANCESTRAL SPECIES 6 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Neognathae_b ANCESTRAL SPECIES 7 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Neognathae_c ANCESTRAL SPECIES 9 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Golden eagle MODERN SPECIES 22 NFE2L2 (ENSACCG00020003695) HNRNPA3 (ENSACCG00020003720) MTX2 (ENSACCG00020003762) #8 HOXD3 (ENSACCG00020003777) #10 HOXD4 (ENSACCG00020003785) #11 HOXD8 (ENSACCG00020003802) #12 HOXD9 (ENSACCG00020003811) #13 HOXD10 (ENSACCG00020003829) #14 HOXD11 (ENSACCG00020003844) #15 HOXD12 (ENSACCG00020003850) #16 HOXD13 (ENSACCG00020003861) #17 EVX2 (ENSACCG00020003885) #18 LNPK (ENSACCG00020003901) #19 ATP5MC3 (ENSACCG00020003917) #20 ATF2 (ENSACCG00020003942) #21 CHN1 (ENSACCG00020003968) #22 CHRNA1 (ENSACCG00020003985) #23 WIPF1 (ENSACCG00020004004) GPR155 (ENSACCG00020004015) #26 SCRN3 (ENSACCG00020004026) #27 CIR1 (ENSACCG00020004036) #28 SP9 (ENSACCG00020004044) OLA1 (ENSACCG00020004056) #30 SP3 (ENSACCG00020004066) #31 CDCA7 (ENSACCG00020004079) #33 MAP3K20 (ENSACCG00020004096) #35 RAPGEF4 (ENSACCG00020004198) #37 ENSACCG00020004271 PDK1 (ENSACCG00020008395) ITGA6 (ENSACCG00020008441) DLX2 (ENSACCG00020008470) Kakapo MODERN SPECIES 22 NFE2L2 (ENSSHBG00005003133) HNRNPA3 (ENSSHBG00005003156) MTX2 (ENSSHBG00005003180) #8 HOXD3 (ENSSHBG00005003209) #10 HOXD4 (ENSSHBG00005003224) #11 HOXD8 (ENSSHBG00005003238) #12 HOXD9 (ENSSHBG00005003249) #13 HOXD10 (ENSSHBG00005003256) #14 HOXD11 (ENSSHBG00005003263) #15 HOXD12 (ENSSHBG00005003274) #16 HOXD13 (ENSSHBG00005003286) #17 EVX2 (ENSSHBG00005003303) #18 LNPK (ENSSHBG00005003318) #19 ATP5MC3 (ENSSHBG00005003340) #20 ATF2 (ENSSHBG00005003358) #21 CHN1 (ENSSHBG00005003384) #22 CHRNA1 (ENSSHBG00005003452) #23 WIPF1 (ENSSHBG00005003524) GPR155 (ENSSHBG00005003538) #26 SCRN3 (ENSSHBG00005003550) #27 CIR1 (ENSSHBG00005003557) #28 SP9 (ENSSHBG00005003570) OLA1 (ENSSHBG00005003576) #30 SP3 (ENSSHBG00005003600) #31 CDCA7 (ENSSHBG00005003621) #33 RAPGEF4 (ENSSHBG00005003811) #37 MAP3K20 (ENSSHBG00005004430) #35 ENSSHBG00005004460 PDK1 (ENSSHBG00005004476) ITGA6 (ENSSHBG00005004486) DLX2 (ENSSHBG00005004508) Passeriformes ANCESTRAL SPECIES 6 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Passeriformes_d ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Passeriformes_g ANCESTRAL SPECIES 9 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Passeroidea ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Common canary MODERN SPECIES 8 AGPS (ENSSCAG00000016170) NFE2L2 (ENSSCAG00000016126) HNRNPA3 (ENSSCAG00000016118) MTX2 (ENSSCAG00000016113) #8 HOXD3 (ENSSCAG00000016112) #10 HOXD4 (ENSSCAG00000016111) #11 HOXD8 (ENSSCAG00000016107) #12 ENSSCAG00000016106 HOXD10 (ENSSCAG00000016104) #14 HOXD11 (ENSSCAG00000016103) #15 HOXD12 (ENSSCAG00000016102) #16 HOXD13 (ENSSCAG00000016098) #17 LNPK (ENSSCAG00000016094) #19 ATP5MC3 (ENSSCAG00000016089) #20 ATF2 (ENSSCAG00000016084) #21 CHN1 (ENSSCAG00000016062) #22 CHRNA1 (ENSSCAG00000016051) #23 ENSSCAG00000016047 GPR155 (ENSSCAG00000016043) #26 SCRN3 (ENSSCAG00000016037) #27 CIR1 (ENSSCAG00000016033) #28 OLA1 (ENSSCAG00000016031) #30 SP3 (ENSSCAG00000016025) #31 CDCA7 (ENSSCAG00000016020) #33 ENSSCAG00000016018 MAP3K20 (ENSSCAG00000016014) #35 RAPGEF4 (ENSSCAG00000015968) #37 ENSSCAG00000015944 PDK1 (ENSSCAG00000015939) ITGA6 (ENSSCAG00000015932) DLX2 (ENSSCAG00000015928) Zebra finch MODERN SPECIES 29 NFE2L2 (ENSTGUG00000009026) HNRNPA3 (ENSTGUG00000008996) MTX2 (ENSTGUG00000019630) #8 HOXD3 (ENSTGUG00000025792) #10 HOXD4 (ENSTGUG00000008959) #11 HOXD8 (ENSTGUG00000022095) #12 HOXD9 (ENSTGUG00000008955) #13 HOXD10 (ENSTGUG00000008948) #14 HOXD11 (ENSTGUG00000008941) #15 HOXD12 (ENSTGUG00000008938) #16 HOXD13 (ENSTGUG00000022083) #17 EVX2 (ENSTGUG00000008931) #18 LNPK (ENSTGUG00000021038) #19 ATP5MC3 (ENSTGUG00000008907) #20 ATF2 (ENSTGUG00000008880) #21 CHN1 (ENSTGUG00000008848) #22 CHRNA1 (ENSTGUG00000008827) #23 WIPF1 (ENSTGUG00000008798) GPR155 (ENSTGUG00000008786) #26 SCRN3 (ENSTGUG00000008770) #27 CIR1 (ENSTGUG00000008746) #28 SP9 (ENSTGUG00000025759) OLA1 (ENSTGUG00000008710) #30 SP3 (ENSTGUG00000008690) #31 CDCA7 (ENSTGUG00000008676) #33 MAP3K20 (ENSTGUG00000026276) #35 RAPGEF4 (ENSTGUG00000008556) #37 ENSTGUG00000008541 PDK1 (ENSTGUG00000008513) ITGA6 (ENSTGUG00000008382) DLX2 (ENSTGUG00000008381) Medium ground finch MODERN SPECIES 1 HNRNPA3 (ENSGFOG00000006562) MTX2 (ENSGFOG00000006557) #8 ENSGFOG00000006552 #10 HOXD4 (ENSGFOG00000006548) #11 HOXD8 (ENSGFOG00000006540) #12 ENSGFOG00000006539 #13 ENSGFOG00000006537 HOXD10 (ENSGFOG00000006531) #14 HOXD11 (ENSGFOG00000006526) #15 HOXD12 (ENSGFOG00000006522) #16 HOXD13 (ENSGFOG00000006517) #17 LNPK (ENSGFOG00000006507) #19 ATP5MC3 (ENSGFOG00000006500) #20 ATF2 (ENSGFOG00000006478) #21 ENSGFOG00000006464 CHN1 (ENSGFOG00000006455) #22 CHRNA1 (ENSGFOG00000006450) #23 ENSGFOG00000006445 GPR155 (ENSGFOG00000006436) #26 SCRN3 (ENSGFOG00000006425) #27 CIR1 (ENSGFOG00000006417) #28 OLA1 (ENSGFOG00000006405) #30 SP3 (ENSGFOG00000006378) #31 CDCA7 (ENSGFOG00000006353) #33 MAP3K20 (ENSGFOG00000006330) #35 RAPGEF4 (ENSGFOG00000006285) #37 ENSGFOG00000006252 PDK1 (ENSGFOG00000006234) ITGA6 (ENSGFOG00000006192) DLX1 (ENSGFOG00000006179) METAP1D (ENSGFOG00000006168) Flycatcher MODERN SPECIES 26 NFE2L2 (ENSFALG00000003227) HNRNPA3 (ENSFALG00000003215) MTX2 (ENSFALG00000003201) #8 HOXD3 (ENSFALG00000003190) #10 HOXD4 (ENSFALG00000026047) #11 HOXD8 (ENSFALG00000027818) #12 HOXD9 (ENSFALG00000025965) #13 HOXD10 (ENSFALG00000003142) #14 HOXD11 (ENSFALG00000014318) #15 HOXD12 (ENSFALG00000003122) #16 HOXD13 (ENSFALG00000003118) #17 EVX2 (ENSFALG00000003109) #18 LNPK (ENSFALG00000003104) #19 ATP5MC3 (ENSFALG00000003095) #20 ATF2 (ENSFALG00000003087) #21 CHN1 (ENSFALG00000003058) #22 CHRNA1 (ENSFALG00000003034) #23 ENSFALG00000003030 ENSFALG00000027529 GPR155 (ENSFALG00000003023) #26 SCRN3 (ENSFALG00000003013) #27 CIR1 (ENSFALG00000002994) #28 SP9 (ENSFALG00000023524) OLA1 (ENSFALG00000002944) #30 SP3 (ENSFALG00000002922) #31 CDCA7 (ENSFALG00000002918) #33 MAP3K20 (ENSFALG00000002910) #35 RAPGEF4 (ENSFALG00000002257) #37 ENSFALG00000002036 PDK1 (ENSFALG00000024030) ITGA6 (ENSFALG00000002030) Great tit MODERN SPECIES 27 NFE2L2 (ENSPMJG00000018516) HNRNPA3 (ENSPMJG00000018517) MTX2 (ENSPMJG00000018521) #8 HOXD3 (ENSPMJG00000018522) #10 HOXD4 (ENSPMJG00000018523) #11 HOXD8 (ENSPMJG00000018525) #12 HOXD9 (ENSPMJG00000018527) #13 HOXD10 (ENSPMJG00000018528) #14 HOXD11 (ENSPMJG00000018529) #15 HOXD12 (ENSPMJG00000018530) #16 HOXD13 (ENSPMJG00000018531) #17 EVX2 (ENSPMJG00000018532) #18 LNPK (ENSPMJG00000018533) #19 ATP5MC3 (ENSPMJG00000018536) #20 ATF2 (ENSPMJG00000018537) #21 CHN1 (ENSPMJG00000018538) #22 CHRNA1 (ENSPMJG00000018564) #23 ENSPMJG00000018566 GPR155 (ENSPMJG00000018567) #26 SCRN3 (ENSPMJG00000018568) #27 CIR1 (ENSPMJG00000018569) #28 SP9 (ENSPMJG00000018570) OLA1 (ENSPMJG00000018572) #30 SP3 (ENSPMJG00000018573) #31 CDCA7 (ENSPMJG00000018577) #33 MAP3K20 (ENSPMJG00000018578) #35 RAPGEF4 (ENSPMJG00000018579) #37 ENSPMJG00000018581 PDK1 (ENSPMJG00000018582) ITGA6 (ENSPMJG00000018583) DLX2 (ENSPMJG00000018585) Galloanserae ANCESTRAL SPECIES 7 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653.c.a #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Anatidae ANCESTRAL SPECIES 10 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000157270 #11 ENSGT00940000160027 #10 ENSGT00940000161653.c.a #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Pink-footed goose MODERN SPECIES 20 ENSABRG00000002541 MTX2 (ENSABRG00000002506) #8 HOXD1 (ENSABRG00000002496) #9 HOXD4 (ENSABRG00000002472) #11 HOXD3 (ENSABRG00000002455) #10 HOXD8 (ENSABRG00000002447) #12 HOXD9 (ENSABRG00000002443) #13 HOXD10 (ENSABRG00000002435) #14 HOXD11 (ENSABRG00000002426) #15 HOXD12 (ENSABRG00000002420) #16 HOXD13 (ENSABRG00000002397) #17 EVX2 (ENSABRG00000002357) #18 LNPK (ENSABRG00000002302) #19 ATP5MC3 (ENSABRG00000002218) #20 ATF2 (ENSABRG00000002181) #21 CHN1 (ENSABRG00000002131) #22 CHRNA1 (ENSABRG00000002084) #23 WIPF1 (ENSABRG00000002070) GPR155 (ENSABRG00000001308) #26 SCRN3 (ENSABRG00000001275) #27 CIR1 (ENSABRG00000001225) #28 SP9 (ENSABRG00000001188) OLA1 (ENSABRG00000001082) #30 SP3 (ENSABRG00000000846) #31 CDCA7 (ENSABRG00000023202) #33 MAP3K20 (ENSABRG00000023201) #35 RAPGEF4 (ENSABRG00000023200) #37 ENSABRG00000023199 PDK1 (ENSABRG00000023198) ITGA6 (ENSABRG00000023197) DLX2 (ENSABRG00000023196) Duck MODERN SPECIES 25 NFE2L2 (ENSAPLG00000010103) HNRNPA3 (ENSAPLG00000009620) MTX2 (ENSAPLG00000009123) #8 HOXD4 (ENSAPLG00000008983) #11 HOXD3 (ENSAPLG00000025122) #10 HOXD8 (ENSAPLG00000008959) #12 HOXD9 (ENSAPLG00000023656) #13 HOXD10 (ENSAPLG00000008956) #14 HOXD11 (ENSAPLG00000020921) #15 HOXD12 (ENSAPLG00000008820) #16 HOXD13 (ENSAPLG00000008742) #17 ENSAPLG00000021400 LNPK (ENSAPLG00000008383) #19 ATP5MC3 (ENSAPLG00000025020) #20 ATF2 (ENSAPLG00000007673) #21 CHN1 (ENSAPLG00000007680) #22 CHRNA1 (ENSAPLG00000007803) #23 ENSAPLG00000025159 GPR155 (ENSAPLG00000008000) #26 SCRN3 (ENSAPLG00000008066) #27 CIR1 (ENSAPLG00000008087) #28 SP9 (ENSAPLG00000026718) OLA1 (ENSAPLG00000008147) #30 SP3 (ENSAPLG00000008201) #31 CDCA7 (ENSAPLG00000008313) #33 ENSAPLG00000008352 MAP3K20 (ENSAPLG00000013963) #35 RAPGEF4 (ENSAPLG00000013981) #37 ENSAPLG00000015004 PDK1 (ENSAPLG00000015342) ITGA6 (ENSAPLG00000015601) Phasianidae ANCESTRAL SPECIES 8 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653.c.a #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Japanese quail MODERN SPECIES 25 HNRNPA3 (ENSCJPG00005017720) MTX2 (ENSCJPG00005017723) #8 HOXD1 (ENSCJPG00005017724) #9 HOXD3 (ENSCJPG00005017726) #10 HOXD4 (ENSCJPG00005017727) #11 HOXD8 (ENSCJPG00005017729) #12 HOXD9 (ENSCJPG00005017730) #13 HOXD10 (ENSCJPG00005017731) #14 HOXD11 (ENSCJPG00005017732) #15 HOXD12 (ENSCJPG00005017733) #16 HOXD13 (ENSCJPG00005017734) #17 EVX2 (ENSCJPG00005017735) #18 LNPK (ENSCJPG00005017736) #19 ATP5MC3 (ENSCJPG00005017742) #20 ATF2 (ENSCJPG00005017743) #21 CHN1 (ENSCJPG00005017745) #22 CHRNA1 (ENSCJPG00005017746) #23 ENSCJPG00005017747 GPR155 (ENSCJPG00005017748) #26 SCRN3 (ENSCJPG00005017749) #27 CIR1 (ENSCJPG00005017750) #28 SP9 (ENSCJPG00005017751) OLA1 (ENSCJPG00005017752) #30 SP3 (ENSCJPG00005017754) #31 CDCA7 (ENSCJPG00005017759) #33 MAP3K20 (ENSCJPG00005017760) #35 RAPGEF4 (ENSCJPG00005017761) #37 ENSCJPG00005017762 PDK1 (ENSCJPG00005017763) ITGA6 (ENSCJPG00005017815) DLX2 (ENSCJPG00005017816) Phasianidae_b ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653.c.a #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.p ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Chicken MODERN SPECIES 36 NFE2L2 (ENSGALG00010024107) HNRNPA3 (ENSGALG00010024144) MTX2 (ENSGALG00010024183) #8 HOXD3 (ENSGALG00010024724) #10 HOXD4 (ENSGALG00010024746) #11 HOXD8 (ENSGALG00010024753) #12 HOXD9 (ENSGALG00010024763) #13 HOXD10 (ENSGALG00010026746) #14 HOXD11 (ENSGALG00010024780) #15 HOXD12 (ENSGALG00010024782) #16 HOXD13 (ENSGALG00010024790) #17 EVX2 (ENSGALG00010025816) #18 LNPK (ENSGALG00010022433) #19 ATP5G3 (ENSGALG00010022456) #20 ATF2 (ENSGALG00010022485) #21 CHN1 (ENSGALG00010026697) #22 CHRNA1 (ENSGALG00010022515) #23 WIPF1 (ENSGALG00010022538) GPR155 (ENSGALG00010022552) #26 SCRN3 (ENSGALG00010022568) #27 CIR1 (ENSGALG00010022585) #28 OLA1 (ENSGALG00010026724) #30 SP9 (ENSGALG00010022605) SP3 (ENSGALG00010022643) #31 CDCA7 (ENSGALG00010021748) #33 MAP3K20 (ENSGALG00010021755) RAPGEF4 (ENSGALG00010021781) #37 PPP1R19L (ENSGALG00010021821) PDK1 (ENSGALG00010021862) ITGA6 (ENSGALG00010021931) DLX2 (ENSGALG00010021707) Turkey MODERN SPECIES 27 HAT1 (ENSMGAG00000010025) ENSMGAG00000010014 ENSMGAG00000009918 ENSMGAG00000017160 ENSMGAG00000009894 ENSMGAG00000009870 #37 ENSMGAG00000009860 ENSMGAG00000009850 #33 ENSMGAG00000009845 #31 ENSMGAG00000009826 #30 ENSMGAG00000018366 #27 ENSMGAG00000009790 #26 ENSMGAG00000020130 #26 ENSMGAG00000021645 ENSMGAG00000009779 ENSMGAG00000009726 #22 ENSMGAG00000009752 #23 ENSMGAG00000021396 ENSMGAG00000020727 ATF2 (ENSMGAG00000009702) #21 ENSMGAG00000009721 #20 ENSMGAG00000009678 #19 ENSMGAG00000009673 #16 ENSMGAG00000009660 #15 ENSMGAG00000020970 #12 ENSMGAG00000017418 #12 ENSMGAG00000012324 DBI (ENSMGAG00000012315) ENSMGAG00000012320 STEAP3 (ENSMGAG00000012322) TMEM37 (ENSMGAG00000015938) African ostrich MODERN SPECIES 838 MTX2 (ENSSCUG00000017505) #8 HOXD4 (ENSSCUG00000017503) #11 HOXD8 (ENSSCUG00000017502) #12 HOXD9 (ENSSCUG00000017501) #13 ENSSCUG00000017500 HOXD10 (ENSSCUG00000017499) #14 HOXD11 (ENSSCUG00000017498) #15 HOXD12 (ENSSCUG00000017497) #16 LNPK (ENSSCUG00000017495) #19 ATP5MC3 (ENSSCUG00000017492) #20 ATF2 (ENSSCUG00000017491) #21 CHN1 (ENSSCUG00000017488) #22 CHRNA1 (ENSSCUG00000017484) #23 ENSSCUG00000017481 GPR155 (ENSSCUG00000017479) #26 SCRN3 (ENSSCUG00000017477) #27 CIR1 (ENSSCUG00000017475) #28 OLA1 (ENSSCUG00000017471) #30 SP3 (ENSSCUG00000017467) #31 CDCA7 (ENSSCUG00000017454) #33 ENSSCUG00000017453 MAP3K20 (ENSSCUG00000017452) #35 RAPGEF4 (ENSSCUG00000017451) #37 ENSSCUG00000017445 PDK1 (ENSSCUG00000017440) ITGA6 (ENSSCUG00000017438) DLX1 (ENSSCUG00000017437) Australian saltwater crocodile MODERN SPECIES 66 ENSCPRG00005013800 MTX2 (ENSCPRG00005013807) #8 HOXD1 (ENSCPRG00005013818) #9 HOXD3 (ENSCPRG00005013823) #10 HOXD4 (ENSCPRG00005013826) #11 HOXD8 (ENSCPRG00005013830) #12 HOXD9 (ENSCPRG00005013832) #13 HOXD10 (ENSCPRG00005013834) #14 HOXD11 (ENSCPRG00005013836) #15 HOXD12 (ENSCPRG00005013839) #16 HOXD13 (ENSCPRG00005013840) #17 EVX2 (ENSCPRG00005013841) #18 LNPK (ENSCPRG00005013854) #19 ATP5MC3 (ENSCPRG00005013858) #20 ATF2 (ENSCPRG00005013860) #21 CHN1 (ENSCPRG00005013868) #22 CHRNA1 (ENSCPRG00005013873) #23 WIPF1 (ENSCPRG00005013893) GPR155 (ENSCPRG00005013904) #26 SCRN3 (ENSCPRG00005013907) #27 CIR1 (ENSCPRG00005013911) #28 OLA1 (ENSCPRG00005013919) #30 SP3 (ENSCPRG00005013930) #31 ENSCPRG00005013941 CDCA7 (ENSCPRG00005013947) #33 ENSCPRG00005013951 RAPGEF4 (ENSCPRG00005013961) #37 ENSCPRG00005013976 PDK1 (ENSCPRG00005013981) ITGA6 (ENSCPRG00005013998) DLX2 (ENSCPRG00005014027) Cryptodira ANCESTRAL SPECIES 5 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000163262.a ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 11 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 Emydidae ANCESTRAL SPECIES 4 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 painted turtle MODERN SPECIES 2363 MTX2 (ENSCPBG00000003480) #8 HOXD1 (ENSCPBG00000003489) #9 HOXD3 (ENSCPBG00000003500) #10 HOXD4 (ENSCPBG00000003507) #11 HOXD8 (ENSCPBG00000003524) #12 ENSCPBG00000003539 HOXD10 (ENSCPBG00000003567) #14 HOXD11 (ENSCPBG00000003578) #15 HOXD12 (ENSCPBG00000003590) #16 HOXD13 (ENSCPBG00000003603) #17 EVX2 (ENSCPBG00000003612) #18 LNPK (ENSCPBG00000003649) #19 ENSCPBG00000003699 ATP5MC3 (ENSCPBG00000003721) #20 ATF2 (ENSCPBG00000003739) #21 ENSCPBG00000003769 #22 CHRNA1 (ENSCPBG00000003798) #23 WIPF1 (ENSCPBG00000003821) GPR155 (ENSCPBG00000003847) #26 SCRN3 (ENSCPBG00000003876) #27 CIR1 (ENSCPBG00000003892) #28 SP9 (ENSCPBG00000003905) OLA1 (ENSCPBG00000003917) #30 SP3 (ENSCPBG00000003941) #31 CDCA7 (ENSCPBG00000003973) #33 ENSCPBG00000003990 MAP3K20 (ENSCPBG00000004016) #35 RAPGEF4 (ENSCPBG00000004046) #37 ENSCPBG00000004114 PDK1 (ENSCPBG00000004159) ITGA6 (ENSCPBG00000004218) Three-toed box turtle MODERN SPECIES 25 HNRNPA3 (ENSTMTG00000016553) MTX2 (ENSTMTG00000016539) #8 HOXD1 (ENSTMTG00000016527) #9 HOXD3 (ENSTMTG00000016516) #10 HOXD4 (ENSTMTG00000016507) #11 HOXD8 (ENSTMTG00000016482) #12 HOXD9 (ENSTMTG00000016450) #13 HOXD10 (ENSTMTG00000016440) #14 HOXD11 (ENSTMTG00000016420) #15 HOXD12 (ENSTMTG00000016406) #16 HOXD13 (ENSTMTG00000016398) #17 EVX2 (ENSTMTG00000016382) #18 LNPK (ENSTMTG00000016336) #19 ATP5MC3 (ENSTMTG00000016312) #20 ATF2 (ENSTMTG00000016268) #21 CHN1 (ENSTMTG00000016233) #22 CHRNA1 (ENSTMTG00000016015) #23 WIPF1 (ENSTMTG00000015938) GPR155 (ENSTMTG00000015892) #26 SCRN3 (ENSTMTG00000015872) #27 CIR1 (ENSTMTG00000015849) #28 SP9 (ENSTMTG00000015838) OLA1 (ENSTMTG00000015817) #30 SP3 (ENSTMTG00000015802) #31 CDCA7 (ENSTMTG00000015773) #33 MAP3K20 (ENSTMTG00000015679) #35 RAPGEF4 (ENSTMTG00000015604) #37 ENSTMTG00000015580 PDK1 (ENSTMTG00000015557) ITGA6 (ENSTMTG00000015475) DLX2 (ENSTMTG00000015446) Testudinidae ANCESTRAL SPECIES 8 ENSGT00950000182892.a.a.b ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Abingdon island giant tortoise MODERN SPECIES 1035 MTX2 (ENSCABG00000005448) #8 HOXD1 (ENSCABG00000005451) #9 HOXD3 (ENSCABG00000005452) #10 HOXD4 (ENSCABG00000005454) #11 HOXD8 (ENSCABG00000005456) #12 ENSCABG00000005458 HOXD10 (ENSCABG00000005460) #14 HOXD11 (ENSCABG00000005462) #15 HOXD12 (ENSCABG00000005463) #16 HOXD13 (ENSCABG00000005464) #17 EVX2 (ENSCABG00000005465) #18 LNPK (ENSCABG00000005471) #19 ATP5MC3 (ENSCABG00000005827) #20 ATF2 (ENSCABG00000005829) #21 ENSCABG00000005833 CHN1 (ENSCABG00000005836) #22 CHRNA1 (ENSCABG00000005846) #23 WIPF1 (ENSCABG00000005855) GPR155 (ENSCABG00000005860) #26 SCRN3 (ENSCABG00000005868) #27 CIR1 (ENSCABG00000005871) #28 SP9 (ENSCABG00000005873) OLA1 (ENSCABG00000005875) #30 SP3 (ENSCABG00000005879) #31 CDCA7 (ENSCABG00000005887) #33 MAP3K20 (ENSCABG00000005938) #35 RAPGEF4 (ENSCABG00000005944) #37 ENSCABG00000005948 ENSCABG00000005949 Goode s thornscrub tortoise MODERN SPECIES 2 HOXD1 (ENSGEVG00005009340) #9 HOXD3 (ENSGEVG00005009410) #10 HOXD4 (ENSGEVG00005009454) #11 HOXD8 (ENSGEVG00005009500) #12 ENSGEVG00005009551 HOXD10 (ENSGEVG00005009665) #14 HOXD11 (ENSGEVG00005009700) #15 HOXD12 (ENSGEVG00005009748) #16 HOXD13 (ENSGEVG00005009780) #17 EVX2 (ENSGEVG00005009804) #18 LNPK (ENSGEVG00005009864) #19 ENSGEVG00005009994 #20 ATF2 (ENSGEVG00005010051) #21 ENSGEVG00005010081 #22 ENSGEVG00005010115 ENSGEVG00005010137 #22 CHRNA1 (ENSGEVG00005010229) #23 WIPF1 (ENSGEVG00005010455) GPR155 (ENSGEVG00005010493) #26 SCRN3 (ENSGEVG00005010545) #27 CIR1 (ENSGEVG00005010578) #28 SP9 (ENSGEVG00005010627) OLA1 (ENSGEVG00005010691) #30 SP3 (ENSGEVG00005010730) #31 ENSGEVG00005010772 CDCA7 (ENSGEVG00005010835) #33 MAP3K20 (ENSGEVG00005011059) #35 RAPGEF4 (ENSGEVG00005011163) #37 ENSGEVG00005011398 ENSGEVG00005011437 PDK1 (ENSGEVG00005011514) Testudinoidea ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 Emydidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 painted turtle MODERN SPECIES 1187 ENSCPBG00000021932 #22 ENSCPBG00000021933 PRKRA (ENSCPBG00000021934) Testudinidae ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.b #22 Goode s thornscrub tortoise MODERN SPECIES 2 HNRNPA3 (ENSGEVG00005020097) MTX2 (ENSGEVG00005020106) #8 HOXD1 (ENSGEVG00005009340) #9 HOXD3 (ENSGEVG00005009410) #10 HOXD4 (ENSGEVG00005009454) #11 HOXD8 (ENSGEVG00005009500) #12 ENSGEVG00005009551 HOXD10 (ENSGEVG00005009665) #14 HOXD11 (ENSGEVG00005009700) #15 HOXD12 (ENSGEVG00005009748) #16 HOXD13 (ENSGEVG00005009780) #17 EVX2 (ENSGEVG00005009804) #18 LNPK (ENSGEVG00005009864) #19 ENSGEVG00005009994 #20 ATF2 (ENSGEVG00005010051) #21 ENSGEVG00005010081 #22 ENSGEVG00005010115 ENSGEVG00005010137 #22 CHRNA1 (ENSGEVG00005010229) #23 WIPF1 (ENSGEVG00005010455) GPR155 (ENSGEVG00005010493) #26 SCRN3 (ENSGEVG00005010545) #27 CIR1 (ENSGEVG00005010578) #28 SP9 (ENSGEVG00005010627) OLA1 (ENSGEVG00005010691) #30 SP3 (ENSGEVG00005010730) #31 ENSGEVG00005010772 CDCA7 (ENSGEVG00005010835) #33 MAP3K20 (ENSGEVG00005011059) #35 RAPGEF4 (ENSGEVG00005011163) #37 ENSGEVG00005011398 Chinese turtle MODERN SPECIES 780 ENSPSIG00000001493 HNRNPA3 (ENSPSIG00000003011) ENSPSIG00000001503 MTX2 (ENSPSIG00000003052) #8 HOXD1 (ENSPSIG00000003058) #9 HOXD3 (ENSPSIG00000003067) #10 HOXD4 (ENSPSIG00000003079) #11 HOXD10 (ENSPSIG00000003088) #14 HOXD11 (ENSPSIG00000003098) #15 HOXD12 (ENSPSIG00000003112) #16 HOXD13 (ENSPSIG00000003141) #17 EVX2 (ENSPSIG00000003143) #18 LNPK (ENSPSIG00000003146) #19 ATP5MC3 (ENSPSIG00000003200) #20 ATF2 (ENSPSIG00000003225) #21 CHN1 (ENSPSIG00000003287) #22 CHRNA1 (ENSPSIG00000003348) #23 ENSPSIG00000001511 WIPF1 (ENSPSIG00000006271) DBF4 (ENSPSIG00000006340) ENSPSIG00000001520 SLC25A40 (ENSPSIG00000006687) RUNDC3B (ENSPSIG00000006825) ENSPSIG00000007351 ENSPSIG00000008403 CROT (ENSPSIG00000008518) ACBD7 (ENSPSIG00000009875) RPP38 (ENSPSIG00000001527) NMT2 (ENSPSIG00000009935) FAM171A1 (ENSPSIG00000010577) ITGA8 (ENSPSIG00000010694) Lepidosauria ANCESTRAL SPECIES 7 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Episquamata ANCESTRAL SPECIES ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Laterata ANCESTRAL SPECIES 30 ENSGT00940000153147 ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000154076.B.b ENSGT00940000155436 #33 ENSGT00940000175090 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b Common wall lizard MODERN SPECIES HNRNPA3 (ENSPMRG00000004153) MTX2 (ENSPMRG00000004174) #8 HOXD1 (ENSPMRG00000004218) #9 HOXD3 (ENSPMRG00000004224) #10 HOXD4 (ENSPMRG00000004227) #11 HOXD8 (ENSPMRG00000004233) #12 HOXD10 (ENSPMRG00000004241) #14 HOXD11 (ENSPMRG00000004246) #15 HOXD12 (ENSPMRG00000004249) #16 HOXD13 (ENSPMRG00000004253) #17 EVX2 (ENSPMRG00000004255) #18 LNPK (ENSPMRG00000004264) #19 ENSPMRG00000004309 ENSPMRG00000004311 #20 ATF2 (ENSPMRG00000004321) #21 CHN1 (ENSPMRG00000004341) #22 CHRNA1 (ENSPMRG00000000100) #23 WIPF1 (ENSPMRG00000000116) GPR155 (ENSPMRG00000000135) #26 SCRN3 (ENSPMRG00000000165) #27 CIR1 (ENSPMRG00000000186) #28 SP9 (ENSPMRG00000000219) OLA1 (ENSPMRG00000000249) #30 SP3 (ENSPMRG00000000292) #31 ENSPMRG00000000324 ENSPMRG00000000349 ENSPMRG00000000381 CDCA7 (ENSPMRG00000000416) #33 ENSPMRG00000000437 MAP3K20 (ENSPMRG00000000520) #35 RAPGEF4 (ENSPMRG00000000688) #37 Argentine black and white tegu MODERN SPECIES 18 ENSSMRG00000018224 MTX2 (ENSSMRG00000018218) #8 HOXD1 (ENSSMRG00000018217) #9 HOXD4 (ENSSMRG00000018216) #11 HOXD3 (ENSSMRG00000018215) #10 HOXD8 (ENSSMRG00000018213) #12 HOXD9 (ENSSMRG00000018212) #13 HOXD10 (ENSSMRG00000018211) #14 HOXD11 (ENSSMRG00000018210) #15 HOXD12 (ENSSMRG00000018209) #16 HOXD13 (ENSSMRG00000018208) #17 EVX2 (ENSSMRG00000018207) #18 LNPK (ENSSMRG00000018206) #19 ENSSMRG00000018204 #20 ATF2 (ENSSMRG00000018203) #21 CHN1 (ENSSMRG00000018201) #22 CHRNA1 (ENSSMRG00000018200) #23 WIPF1 (ENSSMRG00000018198) GPR155 (ENSSMRG00000018197) #26 SCRN3 (ENSSMRG00000018196) #27 CIR1 (ENSSMRG00000018195) #28 SP9 (ENSSMRG00000018194) ENSSMRG00000018193 OLA1 (ENSSMRG00000018191) #30 SP3 (ENSSMRG00000018190) #31 ENSSMRG00000018104 CDCA7 (ENSSMRG00000018098) #33 MAP3K20 (ENSSMRG00000018095) #35 RAPGEF4 (ENSSMRG00000018086) #37 Toxicofera DUPLICATION Toxicofera ANCESTRAL SPECIES 10 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00910000144296 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 Elapidae ANCESTRAL SPECIES ENSGT00950000182892.a.a.b ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Indian cobra MODERN SPECIES ENSNNAG00000000087 MTX2 (ENSNNAG00000000088) #8 ENSNNAG00000000090 HOXD1 (ENSNNAG00000000092) #9 HOXD3 (ENSNNAG00000000093) #10 HOXD4 (ENSNNAG00000000094) #11 HOXD8 (ENSNNAG00000000096) #12 HOXD9 (ENSNNAG00000000098) #13 HOXD10 (ENSNNAG00000000100) #14 HOXD11 (ENSNNAG00000000101) #15 HOXD13 (ENSNNAG00000000102) #17 EVX2 (ENSNNAG00000000104) #18 LNPK (ENSNNAG00000000108) #19 ATP5MC3 (ENSNNAG00000000110) #20 ATF2 (ENSNNAG00000000112) #21 ENSNNAG00000000114 #22 ENSNNAG00000000117 ENSNNAG00000000119 ENSNNAG00000000121 #22 CHRNA1 (ENSNNAG00000000125) #23 ENSNNAG00000000127 #24 GPR155 (ENSNNAG00000000128) #26 SCRN3 (ENSNNAG00000000130) #27 CIR1 (ENSNNAG00000000133) #28 SP9 (ENSNNAG00000000135) OLA1 (ENSNNAG00000000137) #30 SP3 (ENSNNAG00000000138) #31 CDCA7 (ENSNNAG00000000139) #33 MAP3K20 (ENSNNAG00000000140) #35 RAPGEF4 (ENSNNAG00000000144) #37 ENSNNAG00000000147 Elapidae_a ANCESTRAL SPECIES 5 ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.lc #20 ENSGT00940000156582 #21 ENSGT01000000218334 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Blue-lipped sea krait MODERN SPECIES 4226 ENSLLTG00000002358 ENSLLTG00000002360 #22 Acanthophiinae ANCESTRAL SPECIES 7 ENSGT00950000182892.a.a.b ENSGT00940000154808.a.a ENSGT00950000182919.C #8 ENSGT00940000161892 #9 ENSGT00940000160027 #10 ENSGT00940000157270 #11 ENSGT00940000161653 #12 ENSGT00940000161503 #13 ENSGT00940000158266 #14 ENSGT00940000161308 #15 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.lc #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a.c #22 ENSGT00940000156851 #23 ENSGT00390000004153 #26 ENSGT00390000013474.a #27 ENSGT00730000111135 #28 ENSGT00940000162304 ENSGT00390000000673.b #30 ENSGT00940000155099 #31 ENSGT00940000155436 #33 ENSGT00940000161352 #35 ENSGT00940000156075.a.a #37 ENSGT00940000164127 ENSGT01030000234646.B.a.a.b ENSGT00940000155353 ENSGT00940000160127 ENSGT00940000160029 Eastern brown snake MODERN SPECIES 7 AGPS (ENSPTXG00000003592) NFE2L2 (ENSPTXG00000003594) ENSPTXG00000003601 MTX2 (ENSPTXG00000003605) #8 HOXD1 (ENSPTXG00000003611) #9 HOXD3 (ENSPTXG00000003613) #10 HOXD4 (ENSPTXG00000003615) #11 HOXD8 (ENSPTXG00000003619) #12 HOXD9 (ENSPTXG00000003620) #13 HOXD10 (ENSPTXG00000003623) #14 HOXD13 (ENSPTXG00000000024) #17 EVX2 (ENSPTXG00000000029) #18 LNPK (ENSPTXG00000000058) #19 ENSPTXG00000000082 #20 ATF2 (ENSPTXG00000000105) #21 CHN1 (ENSPTXG00000000161) #22 CHRNA1 (ENSPTXG00000000220) #23 ENSPTXG00000000245 #24 GPR155 (ENSPTXG00000000262) #26 SCRN3 (ENSPTXG00000000283) #27 CIR1 (ENSPTXG00000000304) #28 SP9 (ENSPTXG00000000321) OLA1 (ENSPTXG00000000329) #30 SP3 (ENSPTXG00000000354) #31 CDCA7 (ENSPTXG00000000367) #33 MAP3K20 (ENSPTXG00000000382) #35 RAPGEF4 (ENSPTXG00000000433) #37 ENSPTXG00000000542 PDK1 (ENSPTXG00000000578) ITGA6 (ENSPTXG00000000605) DLX2 (ENSPTXG00000000658) Mainland tiger snake MODERN SPECIES 93 MTX2 (ENSNSUG00000011211) #8 HOXD1 (ENSNSUG00000011213) #9 HOXD3 (ENSNSUG00000011215) #10 HOXD4 (ENSNSUG00000011217) #11 HOXD8 (ENSNSUG00000011219) #12 HOXD9 (ENSNSUG00000011220) #13 HOXD10 (ENSNSUG00000011221) #14 HOXD11 (ENSNSUG00000011224) #15 HOXD13 (ENSNSUG00000011225) #17 EVX2 (ENSNSUG00000011227) #18 LNPK (ENSNSUG00000011230) #19 ENSNSUG00000011445 #20 ATF2 (ENSNSUG00000011447) #21 CHN1 (ENSNSUG00000011448) #22 CHRNA1 (ENSNSUG00000011450) #23 ENSNSUG00000011452 #24 GPR155 (ENSNSUG00000011455) #26 ENSNSUG00000011458 #27 CIR1 (ENSNSUG00000011459) #28 SP9 (ENSNSUG00000011499) OLA1 (ENSNSUG00000011501) #30 SP3 (ENSNSUG00000011503) #31 CDCA7 (ENSNSUG00000011545) #33 MAP3K20 (ENSNSUG00000011551) #35 RAPGEF4 (ENSNSUG00000011574) #37 ENSNSUG00000011582 PDK1 (ENSNSUG00000011584) ITGA6 (ENSNSUG00000011670) DLX2 (ENSNSUG00000011797) Toxicofera ANCESTRAL SPECIES 284 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Elapidae ANCESTRAL SPECIES 259 ENSGT01010000228762 ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Indian cobra MODERN SPECIES HOXD1 (ENSNNAG00000000092) #9 HOXD3 (ENSNNAG00000000093) #10 HOXD4 (ENSNNAG00000000094) #11 HOXD8 (ENSNNAG00000000096) #12 HOXD9 (ENSNNAG00000000098) #13 HOXD10 (ENSNNAG00000000100) #14 HOXD11 (ENSNNAG00000000101) #15 HOXD13 (ENSNNAG00000000102) #17 EVX2 (ENSNNAG00000000104) #18 LNPK (ENSNNAG00000000108) #19 ATP5MC3 (ENSNNAG00000000110) #20 ATF2 (ENSNNAG00000000112) #21 ENSNNAG00000000114 #22 ENSNNAG00000000117 ENSNNAG00000000119 ENSNNAG00000000121 #22 CHRNA1 (ENSNNAG00000000125) #23 ENSNNAG00000000127 #24 GPR155 (ENSNNAG00000000128) #26 SCRN3 (ENSNNAG00000000130) #27 CIR1 (ENSNNAG00000000133) #28 SP9 (ENSNNAG00000000135) OLA1 (ENSNNAG00000000137) #30 SP3 (ENSNNAG00000000138) #31 CDCA7 (ENSNNAG00000000139) #33 MAP3K20 (ENSNNAG00000000140) #35 RAPGEF4 (ENSNNAG00000000144) #37 ENSNNAG00000000147 PDK1 (ENSNNAG00000000150) ITGA6 (ENSNNAG00000000157) ENSNNAG00000000187 Elapidae_a ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a.d #22 Blue-lipped sea krait MODERN SPECIES 5152 ENSLLTG00000009172 #22 Lizard MODERN SPECIES 990 ENSACAG00000038540 ATP5MC3 (ENSACAG00000011295) #20 ATF2 (ENSACAG00000011326) #21 CHN1 (ENSACAG00000009221) #22 ENSACAG00000037465 CHRNA1 (ENSACAG00000005293) #23 WIPF1 (ENSACAG00000005402) GPR155 (ENSACAG00000005449) #26 SCRN3 (ENSACAG00000005474) #27 CIR1 (ENSACAG00000044316) #28 SP9 (ENSACAG00000005550) tuatara MODERN SPECIES 1141 ENSSPUG00000002686 #20 ATF2 (ENSSPUG00000002668) #21 CHN1 (ENSSPUG00000002634) #22 CHRNA1 (ENSSPUG00000002611) #23 WIPF1 (ENSSPUG00000002581) GPR155 (ENSSPUG00000002480) #26 SCRN3 (ENSSPUG00000002468) #27 CIR1 (ENSSPUG00000002452) #28 SP9 (ENSSPUG00000002442) OLA1 (ENSSPUG00000002409) #30 SP3 (ENSSPUG00000002382) #31 ENSSPUG00000002171 ENSSPUG00000002114 #33 ENSSPUG00000002104 ENSSPUG00000002098 MAP3K20 (ENSSPUG00000002092) #35 RAPGEF4 (ENSSPUG00000001476) #37 Anura ANCESTRAL SPECIES ENSGT01030000234635.a.b.a.b.b.a.a #22 Leishan spiny toad MODERN SPECIES 10 MTX2 (ENSLLEG00000028232) #8 HOXD1 (ENSLLEG00000028203) #9 HOXD3 (ENSLLEG00000028179) #10 HOXD4 (ENSLLEG00000028161) #11 ENSLLEG00000028121 HOXD9 (ENSLLEG00000028108) #13 HOXD10 (ENSLLEG00000028079) #14 HOXD11 (ENSLLEG00000028065) #15 HOXD13 (ENSLLEG00000028045) #17 EVX2 (ENSLLEG00000028026) #18 LNPK (ENSLLEG00000027978) #19 ATP5MC3 (ENSLLEG00000027926) #20 ENSLLEG00000027903 ATF2 (ENSLLEG00000027780) #21 ENSLLEG00000027748 CHN1 (ENSLLEG00000027124) #22 ENSLLEG00000026724 ENSLLEG00000026332 #23 ENSLLEG00000025568 #23 WIPF1 (ENSLLEG00000025429) ENSLLEG00000025402 GPR155 (ENSLLEG00000025094) #26 ENSLLEG00000024926 #27 CIR1 (ENSLLEG00000024815) #28 SP9 (ENSLLEG00000024755) OLA1 (ENSLLEG00000024413) #30 SP3 (ENSLLEG00000024312) #31 ENSLLEG00000022292 CDCA7 (ENSLLEG00000021778) #33 ENSLLEG00000021098 ENSLLEG00000019579 #37