Euarchontoglires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Primates ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Haplorrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Simiiformes ANCESTRAL SPECIES 15 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Platyrrhini ANCESTRAL SPECIES 9 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.b #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Cebidae ANCESTRAL SPECIES 11 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.a ##31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Cebidae_a ANCESTRAL SPECIES 27 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00940000155099.a #30 ENSGT00940000155436.o.a.b #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 ENSGT00940000157735 Bolivian squirrel monkey MODERN SPECIES 46 NFE2L2 (ENSSBOG00000022740) #7 HNRNPA3 (ENSSBOG00000034307) #8 MTX2 (ENSSBOG00000025795) #9 HOXD1 (ENSSBOG00000030906) #10 HOXD3 (ENSSBOG00000031894) #11 HOXD4 (ENSSBOG00000031535) #12 ENSSBOG00000029405 #13 HOXD9 (ENSSBOG00000031095) #14 HOXD10 (ENSSBOG00000020553) #15 HOXD12 (ENSSBOG00000025723) #16 HOXD13 (ENSSBOG00000032579) #17 EVX2 (ENSSBOG00000034364) #18 LNPK (ENSSBOG00000023054) #19 ATP5MC3 (ENSSBOG00000022688) #20 ATF2 (ENSSBOG00000025461) #21 CHN1 (ENSSBOG00000016307) #22 CHRNA1 (ENSSBOG00000035763) #23 WIPF1 (ENSSBOG00000032169) #24 GPR155 (ENSSBOG00000034957) #25 SCRN3 (ENSSBOG00000033089) #26 CIR1 (ENSSBOG00000028527) #27 ENSSBOG00000020259 #28 ENSSBOG00000002999 #29 SP3 (ENSSBOG00000035329) #30 ENSSBOG00000029333 #31 MAP3K20 (ENSSBOG00000023872) #32 RAPGEF4 (ENSSBOG00000031049) #33 PDK1 (ENSSBOG00000019615) #34 ITGA6 (ENSSBOG00000032166) #35 ENSSBOG00000035010 #36 DLX2 (ENSSBOG00000028830) #37 Capuchin MODERN SPECIES 110 ENSCCAG00000035403 #12 HOXD8 (ENSCCAG00000001172) #13 HOXD9 (ENSCCAG00000021007) #14 HOXD10 (ENSCCAG00000020764) #15 HOXD11 (ENSCCAG00000034968) HOXD12 (ENSCCAG00000026325) #16 HOXD13 (ENSCCAG00000032945) #17 EVX2 (ENSCCAG00000032502) #18 LNPK (ENSCCAG00000022702) #19 ENSCCAG00000015947 ENSCCAG00000020514 #20 ATF2 (ENSCCAG00000035902) #21 ENSCCAG00000034541 CHN1 (ENSCCAG00000027038) #22 CHRNA1 (ENSCCAG00000032209) #23 WIPF1 (ENSCCAG00000012994) #24 GPR155 (ENSCCAG00000032455) #25 SCRN3 (ENSCCAG00000022566) #26 CIR1 (ENSCCAG00000030492) #27 SP9 (ENSCCAG00000031565) ENSCCAG00000035969 ENSCCAG00000028608 OLA1 (ENSCCAG00000017844) #29 SP3 (ENSCCAG00000024347) #30 ENSCCAG00000033554 ##31 MAP3K20 (ENSCCAG00000029605) #32 RAPGEF4 (ENSCCAG00000034923) #33 PDK1 (ENSCCAG00000023566) #34 ITGA6 (ENSCCAG00000022463) #35 Marmoset MODERN SPECIES 18 HOXD3 (ENSCJAG00000063715) #11 HOXD4 (ENSCJAG00000008286) #12 HOXD8 (ENSCJAG00000008284) #13 HOXD9 (ENSCJAG00000046789) #14 HOXD10 (ENSCJAG00000008269) #15 HOXD11 (ENSCJAG00000048503) HOXD12 (ENSCJAG00000079626) #16 HOXD13 (ENSCJAG00000040882) #17 EVX2 (ENSCJAG00000077487) #18 LNPK (ENSCJAG00000008226) #19 ENSCJAG00000022954 ENSCJAG00000084464 ENSCJAG00000080703 ATP5MC3 (ENSCJAG00000008207) #20 ATF2 (ENSCJAG00000008085) #21 CHN1 (ENSCJAG00000008041) #22 CHRNA1 (ENSCJAG00000008007) #23 WIPF1 (ENSCJAG00000048519) #24 GPR155 (ENSCJAG00000007947) #25 SCRN3 (ENSCJAG00000007909) #26 CIR1 (ENSCJAG00000007884) #27 ENSCJAG00000081398 SP9 (ENSCJAG00000061755) OLA1 (ENSCJAG00000007877) #29 SP3 (ENSCJAG00000007851) #30 CDCA7 (ENSCJAG00000007809) ##31 MAP3K20 (ENSCJAG00000007736) #32 RAPGEF4 (ENSCJAG00000007525) #33 PDK1 (ENSCJAG00000007507) #34 ITGA6 (ENSCJAG00000007399) #35 ENSCJAG00000012387 Mas night monkey MODERN SPECIES 572 ENSANAG00000024757 #21 CHN1 (ENSANAG00000024164) #22 CHRNA1 (ENSANAG00000022062) #23 Catarrhini ANCESTRAL SPECIES 16 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 ENSGT00940000155353 #35 Hominoidea ANCESTRAL SPECIES 15 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Gibbon MODERN SPECIES 14 MTX2 (ENSNLEG00000006020) #9 HOXD1 (ENSNLEG00000006019) #10 ENSNLEG00000027160 HOXD3 (ENSNLEG00000006018) #11 HOXD4 (ENSNLEG00000006014) #12 ENSNLEG00000006003 #13 HOXD9 (ENSNLEG00000006011) #14 HOXD10 (ENSNLEG00000006010) #15 HOXD12 (ENSNLEG00000006006) #16 HOXD13 (ENSNLEG00000029303) #17 EVX2 (ENSNLEG00000005999) #18 LNPK (ENSNLEG00000005977) #19 ATP5MC3 (ENSNLEG00000005971) #20 ATF2 (ENSNLEG00000005938) #21 ENSNLEG00000028605 CHN1 (ENSNLEG00000005923) #22 CHRNA1 (ENSNLEG00000005914) #23 WIPF1 (ENSNLEG00000005907) #24 ENSNLEG00000033625 GPR155 (ENSNLEG00000005896) #25 SCRN3 (ENSNLEG00000005880) #26 ENSNLEG00000005869 #27 ENSNLEG00000033171 ENSNLEG00000030268 OLA1 (ENSNLEG00000005817) #29 SP3 (ENSNLEG00000005812) #30 ENSNLEG00000036050 ENSNLEG00000031261 CDCA7 (ENSNLEG00000005787) #31 MAP3K20 (ENSNLEG00000005760) #32 ENSNLEG00000033045 Hominidae ANCESTRAL SPECIES 17 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Orangutan MODERN SPECIES 15 ENSPPYG00000037565 HOXD1 (ENSPPYG00000012964) #10 HOXD3 (ENSPPYG00000012963) #11 HOXD4 (ENSPPYG00000034536) #12 HOXD8 (ENSPPYG00000037201) #13 HOXD9 (ENSPPYG00000012959) #14 HOXD10 (ENSPPYG00000012958) #15 HOXD11 (ENSPPYG00000031598) HOXD12 (ENSPPYG00000012957) #16 HOXD13 (ENSPPYG00000012956) #17 EVX2 (ENSPPYG00000012955) #18 LNPK (ENSPPYG00000032630) #19 ATP5MC3 (ENSPPYG00000037033) #20 ENSPPYG00000041465 ATF2 (ENSPPYG00000012951) #21 CHN1 (ENSPPYG00000012950) #22 CHRNA1 (ENSPPYG00000012949) #23 WIPF1 (ENSPPYG00000012948) #24 GPR155 (ENSPPYG00000012947) #25 ENSPPYG00000012946 #26 ENSPPYG00000012945 #27 SP9 (ENSPPYG00000033437) OLA1 (ENSPPYG00000012943) #29 SP3 (ENSPPYG00000012941) #30 CDCA7 (ENSPPYG00000012940) #31 MAP3K20 (ENSPPYG00000012939) #32 RAPGEF4 (ENSPPYG00000012938) #33 PDK1 (ENSPPYG00000012937) #34 ITGA6 (ENSPPYG00000012936) #35 DLX2 (ENSPPYG00000012935) #37 DLX1 (ENSPPYG00000035109) Homo/Pan/Gorilla group ANCESTRAL SPECIES 14 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Gorilla MODERN SPECIES 15 ENSGGOG00000041480 HOXD1 (ENSGGOG00000001348) #10 ENSGGOG00000037792 HOXD3 (ENSGGOG00000037089) #11 HOXD4 (ENSGGOG00000042533) #12 ENSGGOG00000009898 #13 HOXD9 (ENSGGOG00000001343) #14 HOXD10 (ENSGGOG00000001341) #15 ENSGGOG00000044084 ENSGGOG00000038035 #16 ENSGGOG00000041387 #17 EVX2 (ENSGGOG00000001335) #18 LNPK (ENSGGOG00000007852) #19 ATP5MC3 (ENSGGOG00000036796) #20 ATF2 (ENSGGOG00000027461) #21 CHN1 (ENSGGOG00000002177) #22 CHRNA1 (ENSGGOG00000008036) #23 WIPF1 (ENSGGOG00000016773) #24 ENSGGOG00000005480 GPR155 (ENSGGOG00000004876) #25 SCRN3 (ENSGGOG00000034896) #26 SP9 (ENSGGOG00000007345) OLA1 (ENSGGOG00000022215) #29 SP3 (ENSGGOG00000011699) #30 ENSGGOG00000041228 ENSGGOG00000041018 ENSGGOG00000042056 CDCA7 (ENSGGOG00000024973) #31 MAP3K20 (ENSGGOG00000005714) #32 ENSGGOG00000038487 RAPGEF4 (ENSGGOG00000009121) #33 Homo/Pan group ANCESTRAL SPECIES 13 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Human MODERN SPECIES 11 HNRNPA3 (ENSG00000170144) #8 MTX2 (ENSG00000128654) #9 HOXD1 (ENSG00000128645) #10 HOXD4 (ENSG00000170166) #12 HOXD3 (ENSG00000128652) #11 HOXD8 (ENSG00000175879) #13 HOXD9 (ENSG00000128709) #14 HOXD10 (ENSG00000128710) #15 HOXD11 (ENSG00000128713) HOXD12 (ENSG00000170178) #16 HOXD13 (ENSG00000128714) #17 EVX2 (ENSG00000174279) #18 LNPK (ENSG00000144320) #19 ATP5MC3 (ENSG00000154518) #20 ATF2 (ENSG00000115966) #21 CHN1 (ENSG00000128656) #22 CHRNA1 (ENSG00000138435) #23 WIPF1 (ENSG00000115935) #24 GPR155 (ENSG00000163328) #25 SCRN3 (ENSG00000144306) #26 CIR1 (ENSG00000138433) #27 SP9 (ENSG00000217236) OLA1 (ENSG00000138430) #29 SP3 (ENSG00000172845) #30 CDCA7 (ENSG00000144354) #31 MAP3K20 (ENSG00000091436) #32 RAPGEF4 (ENSG00000091428) #33 PDK1 (ENSG00000152256) #34 ITGA6 (ENSG00000091409) #35 DLX2 (ENSG00000115844) #37 DLX1 (ENSG00000144355) Pan ANCESTRAL SPECIES 12 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000008029.v ENSGT00940000167313 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.a.a #29 ENSGT00940000155099.a #30 ENSGT00950000183087.B ENSGT00940000153137.a.a.h ENSGT00940000162422 ENSGT00940000155436 #31 ENSGT00940000161352 #32 Chimpanzee MODERN SPECIES 15 ENSPTRG00000023851 HOXD1 (ENSPTRG00000052716) #10 ENSPTRG00000051348 HOXD3 (ENSPTRG00000012672) #11 HOXD4 (ENSPTRG00000051862) #12 HOXD8 (ENSPTRG00000012669) #13 HOXD9 (ENSPTRG00000043464) #14 HOXD10 (ENSPTRG00000012667) #15 HOXD11 (ENSPTRG00000012666) HOXD12 (ENSPTRG00000012665) #16 HOXD13 (ENSPTRG00000012664) #17 EVX2 (ENSPTRG00000012663) #18 LNPK (ENSPTRG00000012662) #19 ATP5MC3 (ENSPTRG00000047314) #20 ATF2 (ENSPTRG00000012660) #21 CHN1 (ENSPTRG00000012659) #22 CHRNA1 (ENSPTRG00000012658) #23 WIPF1 (ENSPTRG00000012656) GPR155 (ENSPTRG00000012655) #25 SCRN3 (ENSPTRG00000012653) #26 CIR1 (ENSPTRG00000012652) #27 SP9 (ENSPTRG00000045805) OLA1 (ENSPTRG00000012650) #29 SP3 (ENSPTRG00000012647) #30 ENSPTRG00000044219 ENSPTRG00000051676 ENSPTRG00000052501 CDCA7 (ENSPTRG00000012645) #31 MAP3K20 (ENSPTRG00000012644) #32 ENSPTRG00000052310 RAPGEF4 (ENSPTRG00000012643) #33 Bonobo MODERN SPECIES 15 ENSPPAG00000025118 ENSPPAG00000031665 #10 ENSPPAG00000013988 HOXD3 (ENSPPAG00000031713) #11 HOXD4 (ENSPPAG00000034992) #12 ENSPPAG00000034189 #13 HOXD9 (ENSPPAG00000039242) #14 HOXD10 (ENSPPAG00000036046) #15 ENSPPAG00000028125 HOXD12 (ENSPPAG00000017089) #16 ENSPPAG00000010483 #17 ENSPPAG00000039855 #18 LNPK (ENSPPAG00000030440) #19 ATP5MC3 (ENSPPAG00000036512) #20 ATF2 (ENSPPAG00000027656) #21 ENSPPAG00000023882 #22 CHRNA1 (ENSPPAG00000024985) #23 WIPF1 (ENSPPAG00000037968) #24 ENSPPAG00000040473 GPR155 (ENSPPAG00000032733) #25 SCRN3 (ENSPPAG00000032328) #26 CIR1 (ENSPPAG00000041485) #27 OLA1 (ENSPPAG00000035004) #29 SP3 (ENSPPAG00000028328) #30 ENSPPAG00000037850 ENSPPAG00000027126 CDCA7 (ENSPPAG00000040919) #31 MAP3K20 (ENSPPAG00000000371) #32 RAPGEF4 (ENSPPAG00000037991) #33 ENSPPAG00000041264 PDK1 (ENSPPAG00000042696) #34 Cercopithecidae ANCESTRAL SPECIES 13 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 Cercopithecinae ANCESTRAL SPECIES 11 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 ENSGT00910000148590 Vervet Monkey MODERN SPECIES 1 NFE2L2 (ENSCSAG00000014353) #7 ENSCSAG00000014399 #8 MTX2 (ENSCSAG00000014412) #9 HOXD1 (ENSCSAG00000014419) #10 HOXD3 (ENSCSAG00000014422) #11 HOXD4 (ENSCSAG00000014429) #12 HOXD8 (ENSCSAG00000014437) #13 HOXD9 (ENSCSAG00000014441) #14 HOXD10 (ENSCSAG00000014448) #15 HOXD11 (ENSCSAG00000014457) HOXD12 (ENSCSAG00000014464) #16 HOXD13 (ENSCSAG00000014475) #17 EVX2 (ENSCSAG00000014486) #18 LNPK (ENSCSAG00000014506) #19 ATF2 (ENSCSAG00000014523) #21 CHN1 (ENSCSAG00000014539) #22 CHRNA1 (ENSCSAG00000014545) #23 WIPF1 (ENSCSAG00000014556) #24 GPR155 (ENSCSAG00000014572) #25 SCRN3 (ENSCSAG00000014584) #26 CIR1 (ENSCSAG00000014627) #27 SP9 (ENSCSAG00000014648) OLA1 (ENSCSAG00000014670) #29 SP3 (ENSCSAG00000014689) #30 CDCA7 (ENSCSAG00000014699) #31 ENSCSAG00000014701 ENSCSAG00000014706 #32 RAPGEF4 (ENSCSAG00000014720) #33 PDK1 (ENSCSAG00000014733) #34 ITGA6 (ENSCSAG00000014750) #35 DLX2 (ENSCSAG00000014766) #37 Cercopithecinae_a ANCESTRAL SPECIES 16 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Macaca ANCESTRAL SPECIES 15 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT00390000018390.jc.n ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Macaca_a ANCESTRAL SPECIES 17 ENSGT00940000161892 #10 ENSGT00910000147400 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000166143.A.a.b.b.b.b.a.b.b ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00980000202811 ENSGT00940000155353 #35 Crab-eating macaque MODERN SPECIES 3 HOXD1 (ENSMFAG00000046035) #10 ENSMFAG00000047422 HOXD3 (ENSMFAG00000034065) #11 HOXD4 (ENSMFAG00000052240) #12 HOXD8 (ENSMFAG00000065214) #13 HOXD9 (ENSMFAG00000000099) #14 HOXD10 (ENSMFAG00000031117) #15 ENSMFAG00000043724 HOXD12 (ENSMFAG00000051547) #16 HOXD13 (ENSMFAG00000033237) #17 ENSMFAG00000053875 LNPK (ENSMFAG00000002105) #19 ENSMFAG00000002936 ATP5MC3 (ENSMFAG00000056189) #20 ATF2 (ENSMFAG00000002278) #21 CHN1 (ENSMFAG00000002404) #22 CHRNA1 (ENSMFAG00000042992) #23 WIPF1 (ENSMFAG00000034165) #24 ENSMFAG00000060672 ENSMFAG00000039499 ENSMFAG00000056942 SCRN3 (ENSMFAG00000042925) #26 GPR155 (ENSMFAG00000035341) #25 SP9 (ENSMFAG00000035384) OLA1 (ENSMFAG00000044124) #29 ENSMFAG00000052622 SP3 (ENSMFAG00000001253) #30 ENSMFAG00000051912 CDCA7 (ENSMFAG00000033844) #31 MAP3K20 (ENSMFAG00000001160) #32 RAPGEF4 (ENSMFAG00000044653) #33 Rhesus MODERN SPECIES 3 MTX2 (ENSMMUG00000010185) #9 HOXD1 (ENSMMUG00000065344) #10 ENSMMUG00000052177 HOXD3 (ENSMMUG00000051761) #11 HOXD4 (ENSMMUG00000060947) #12 HOXD8 (ENSMMUG00000023504) #13 HOXD9 (ENSMMUG00000032599) #14 HOXD10 (ENSMMUG00000046368) #15 HOXD11 (ENSMMUG00000047915) HOXD12 (ENSMMUG00000023501) #16 HOXD13 (ENSMMUG00000055831) #17 EVX2 (ENSMMUG00000061506) #18 LNPK (ENSMMUG00000023498) #19 ATP5MC3 (ENSMMUG00000003954) #20 ATF2 (ENSMMUG00000003947) #21 CHN1 (ENSMMUG00000021797) #22 CHRNA1 (ENSMMUG00000021796) #23 WIPF1 (ENSMMUG00000009593) #24 ENSMMUG00000053004 GPR155 (ENSMMUG00000021012) #25 SCRN3 (ENSMMUG00000023009) #26 CIR1 (ENSMMUG00000023006) #27 SP9 (ENSMMUG00000023005) OLA1 (ENSMMUG00000007092) #29 ENSMMUG00000060201 SP3 (ENSMMUG00000021818) #30 ENSMMUG00000010554 CDCA7 (ENSMMUG00000014228) #31 MAP3K20 (ENSMMUG00000014672) #32 RAPGEF4 (ENSMMUG00000020792) #33 PDK1 (ENSMMUG00000022553) #34 Pig-tailed macaque MODERN SPECIES 585 ENSMNEG00000018849 HOXD3 (ENSMNEG00000040202) #11 HOXD4 (ENSMNEG00000030845) #12 HOXD8 (ENSMNEG00000028133) #13 HOXD9 (ENSMNEG00000044938) #14 HOXD10 (ENSMNEG00000033923) #15 HOXD11 (ENSMNEG00000029127) HOXD12 (ENSMNEG00000002891) #16 HOXD13 (ENSMNEG00000027142) #17 EVX2 (ENSMNEG00000028323) #18 ENSMNEG00000024050 LNPK (ENSMNEG00000028702) #19 ENSMNEG00000035184 ATP5MC3 (ENSMNEG00000029106) #20 ATF2 (ENSMNEG00000037988) #21 CHN1 (ENSMNEG00000033120) #22 ENSMNEG00000009103 CHRNA1 (ENSMNEG00000043912) #23 WIPF1 (ENSMNEG00000045560) #24 ENSMNEG00000031252 GPR155 (ENSMNEG00000028550) #25 SCRN3 (ENSMNEG00000035295) #26 CIR1 (ENSMNEG00000045151) #27 SP9 (ENSMNEG00000034757) OLA1 (ENSMNEG00000040767) #29 SP3 (ENSMNEG00000042516) #30 ENSMNEG00000039997 CDCA7 (ENSMNEG00000033719) #31 MAP3K20 (ENSMNEG00000044858) #32 RAPGEF4 (ENSMNEG00000030581) #33 ENSMNEG00000040448 Cercopithecinae_b ANCESTRAL SPECIES 10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 Olive baboon MODERN SPECIES 1 MTX2 (ENSPANG00000013333) #9 HOXD1 (ENSPANG00000009593) #10 HOXD3 (ENSPANG00000000543) #11 HOXD4 (ENSPANG00000000542) #12 HOXD8 (ENSPANG00000049199) #13 HOXD9 (ENSPANG00000001061) #14 HOXD10 (ENSPANG00000050198) #15 HOXD11 (ENSPANG00000049530) ENSPANG00000044332 #16 ENSPANG00000044695 #17 ENSPANG00000039545 #18 LNPK (ENSPANG00000011787) #19 ATP5MC3 (ENSPANG00000031591) #20 ATF2 (ENSPANG00000004806) #21 ENSPANG00000005473 CHN1 (ENSPANG00000008236) #22 CHRNA1 (ENSPANG00000007790) #23 WIPF1 (ENSPANG00000019541) #24 GPR155 (ENSPANG00000006559) #25 SCRN3 (ENSPANG00000001316) #26 CIR1 (ENSPANG00000033102) #27 SP9 (ENSPANG00000051025) ENSPANG00000035758 OLA1 (ENSPANG00000020854) #29 ENSPANG00000037160 SP3 (ENSPANG00000005418) #30 ENSPANG00000050966 CDCA7 (ENSPANG00000024998) #31 MAP3K20 (ENSPANG00000000071) #32 RAPGEF4 (ENSPANG00000007791) #33 PDK1 (ENSPANG00000018423) #34 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00950000182922.a.a.a.b.a.a.b.b ENSGT00390000001859 #19 ENSGT00950000182827.A.j ENSGT00950000182827.A.i.b ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00940000165163 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g #27 ENSGT00940000162304 ENSGT00950000183198.c.b.a ENSGT00390000000673.b #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 Drill MODERN SPECIES 1072 MTX2 (ENSMLEG00000002029) #9 HOXD1 (ENSMLEG00000035890) #10 HOXD3 (ENSMLEG00000037278) #11 HOXD4 (ENSMLEG00000024188) #12 ENSMLEG00000042507 #13 HOXD9 (ENSMLEG00000025695) #14 HOXD10 (ENSMLEG00000044067) #15 ENSMLEG00000030792 HOXD12 (ENSMLEG00000032533) #16 HOXD13 (ENSMLEG00000031532) #17 EVX2 (ENSMLEG00000035528) #18 LNPK (ENSMLEG00000033659) #19 ENSMLEG00000001270 ATP5MC3 (ENSMLEG00000043816) #20 ATF2 (ENSMLEG00000035167) #21 CHN1 (ENSMLEG00000032406) #22 ENSMLEG00000000615 CHRNA1 (ENSMLEG00000043089) #23 WIPF1 (ENSMLEG00000001484) #24 ENSMLEG00000029654 GPR155 (ENSMLEG00000027961) #25 SCRN3 (ENSMLEG00000043626) #26 CIR1 (ENSMLEG00000009014) #27 OLA1 (ENSMLEG00000040175) #29 ENSMLEG00000042096 SP3 (ENSMLEG00000022357) #30 CDCA7 (ENSMLEG00000036199) #31 MAP3K20 (ENSMLEG00000035407) #32 RAPGEF4 (ENSMLEG00000043070) #33 ENSMLEG00000036771 PDK1 (ENSMLEG00000031983) #34 Sooty mangabey MODERN SPECIES 570 HOXD4 (ENSCATG00000041719) #12 HOXD8 (ENSCATG00000032148) #13 HOXD9 (ENSCATG00000037190) #14 HOXD11 (ENSCATG00000031157) HOXD10 (ENSCATG00000032256) #15 HOXD12 (ENSCATG00000032043) #16 HOXD13 (ENSCATG00000031889) #17 EVX2 (ENSCATG00000038250) #18 ENSCATG00000005782 LNPK (ENSCATG00000039052) #19 ENSCATG00000041432 ENSCATG00000037951 ATP5MC3 (ENSCATG00000035329) #20 ATF2 (ENSCATG00000005694) #21 ENSCATG00000035911 CHN1 (ENSCATG00000036640) #22 CHRNA1 (ENSCATG00000030584) #23 WIPF1 (ENSCATG00000022645) #24 GPR155 (ENSCATG00000033300) #25 SCRN3 (ENSCATG00000032178) #26 CIR1 (ENSCATG00000034814) #27 SP9 (ENSCATG00000031475) ENSCATG00000031189 ENSCATG00000038920 #29 SP3 (ENSCATG00000028784) #30 ENSCATG00000036945 CDCA7 (ENSCATG00000035553) #31 MAP3K20 (ENSCATG00000038986) #32 ENSCATG00000036110 RAPGEF4 (ENSCATG00000033510) #33 PDK1 (ENSCATG00000035483) #34 Rhinopithecus ANCESTRAL SPECIES 68 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135.g.a.b #27 ENSGT00730000111135.g.b #27 ENSGT00940000162304 ENSGT00390000000673.b.d #29 ENSGT00940000155099.a #30 ENSGT00940000162422.d ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT00910000146880 ENSGT01030000234646.B.a.a.b #34 Black snub-nosed monkey MODERN SPECIES 1870 CHN1 (ENSRBIG00000044556) #22 CHRNA1 (ENSRBIG00000024590) #23 WIPF1 (ENSRBIG00000041160) #24 GPR155 (ENSRBIG00000027170) #25 SCRN3 (ENSRBIG00000032103) #26 ENSRBIG00000043539 #27 SP9 (ENSRBIG00000041465) OLA1 (ENSRBIG00000006151) #29 SP3 (ENSRBIG00000030644) #30 ENSRBIG00000035710 CDCA7 (ENSRBIG00000037944) #31 MAP3K20 (ENSRBIG00000032964) #32 RAPGEF4 (ENSRBIG00000042553) #33 ENSRBIG00000039311 Golden snub-nosed monkey MODERN SPECIES 2872 CHN1 (ENSRROG00000042097) #22 CHRNA1 (ENSRROG00000045787) #23 Tarsier MODERN SPECIES 5208 GAL3ST4 (ENSTSYG00000036714) GPC2 (ENSTSYG00000025495) ATF2 (ENSTSYG00000002606) #21 CHN1 (ENSTSYG00000004837) #22 CHRNA1 (ENSTSYG00000005526) #23 Strepsirrhini ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.a #28 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Lemuriformes ANCESTRAL SPECIES 5 ENSGT00940000153147.m.a.a.a.b.a.a #28 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.v.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Mouse lemur MODERN SPECIES 30 ENSMICG00000027841 #28 MTX2 (ENSMICG00000004295) #9 HOXD1 (ENSMICG00000044650) #10 HOXD3 (ENSMICG00000004286) #11 HOXD4 (ENSMICG00000043209) #12 HOXD8 (ENSMICG00000004277) #13 HOXD9 (ENSMICG00000031229) #14 HOXD10 (ENSMICG00000028373) #15 HOXD11 (ENSMICG00000048033) HOXD12 (ENSMICG00000002172) #16 HOXD13 (ENSMICG00000002170) #17 EVX2 (ENSMICG00000035343) #18 LNPK (ENSMICG00000027707) #19 ATP5MC3 (ENSMICG00000006421) #20 ATF2 (ENSMICG00000006417) #21 CHN1 (ENSMICG00000014292) #22 ENSMICG00000038672 CHRNA1 (ENSMICG00000014284) #23 ENSMICG00000031974 GPR155 (ENSMICG00000000369) #25 SCRN3 (ENSMICG00000000366) #26 CIR1 (ENSMICG00000026886) #27 SP9 (ENSMICG00000031506) ENSMICG00000007356 ENSMICG00000000354 #29 SP3 (ENSMICG00000014796) #30 CDCA7 (ENSMICG00000016991) #31 MAP3K20 (ENSMICG00000011055) #32 RAPGEF4 (ENSMICG00000011026) #33 PDK1 (ENSMICG00000007005) #34 ITGA6 (ENSMICG00000006990) #35 Lemuriformes_a ANCESTRAL SPECIES 69 ENSGT00940000153147.m.a.a.a.b.a.a #28 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b.v.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Greater bamboo lemur MODERN SPECIES 243 HOXD1 (ENSPSMG00000024516) #10 ENSPSMG00000024512 HOXD3 (ENSPSMG00000024507) #11 HOXD4 (ENSPSMG00000024504) #12 HOXD8 (ENSPSMG00000024501) #13 HOXD9 (ENSPSMG00000024487) #14 HOXD10 (ENSPSMG00000024482) #15 HOXD11 (ENSPSMG00000024479) HOXD12 (ENSPSMG00000024476) #16 HOXD13 (ENSPSMG00000024474) #17 EVX2 (ENSPSMG00000024469) #18 ENSPSMG00000024465 LNPK (ENSPSMG00000024460) #19 ATP5MC3 (ENSPSMG00000024446) #20 ATF2 (ENSPSMG00000024416) #21 CHN1 (ENSPSMG00000024301) #22 CHRNA1 (ENSPSMG00000024264) #23 WIPF1 (ENSPSMG00000024219) #24 GPR155 (ENSPSMG00000024199) #25 SCRN3 (ENSPSMG00000024170) #26 CIR1 (ENSPSMG00000024153) #27 SP9 (ENSPSMG00000024136) OLA1 (ENSPSMG00000024129) #29 SP3 (ENSPSMG00000024117) #30 CDCA7 (ENSPSMG00000024083) #31 ENSPSMG00000024060 MAP3K20 (ENSPSMG00000024048) #32 RAPGEF4 (ENSPSMG00000023978) #33 PDK1 (ENSPSMG00000023879) #34 ITGA6 (ENSPSMG00000023755) #35 DLX2 (ENSPSMG00000023598) #37 Coquerels sifaka MODERN SPECIES 478 NFE2L2 (ENSPCOG00000007362) #7 MTX2 (ENSPCOG00000025077) #9 HOXD1 (ENSPCOG00000024445) #10 HOXD3 (ENSPCOG00000017195) #11 HOXD4 (ENSPCOG00000018337) #12 HOXD8 (ENSPCOG00000024233) #13 HOXD9 (ENSPCOG00000026809) #14 HOXD10 (ENSPCOG00000023637) #15 HOXD11 (ENSPCOG00000015055) HOXD12 (ENSPCOG00000022036) #16 HOXD13 (ENSPCOG00000018735) #17 EVX2 (ENSPCOG00000022416) #18 LNPK (ENSPCOG00000026983) #19 ATP5MC3 (ENSPCOG00000016374) #20 ATF2 (ENSPCOG00000025416) #21 CHN1 (ENSPCOG00000018830) #22 CHRNA1 (ENSPCOG00000020642) #23 ENSPCOG00000015733 ENSPCOG00000018466 GPR155 (ENSPCOG00000014376) #25 SCRN3 (ENSPCOG00000015456) #26 CIR1 (ENSPCOG00000014298) #27 SP9 (ENSPCOG00000018883) ENSPCOG00000017353 #29 SP3 (ENSPCOG00000017224) #30 CDCA7 (ENSPCOG00000001432) #31 MAP3K20 (ENSPCOG00000027012) #32 RAPGEF4 (ENSPCOG00000022261) #33 PDK1 (ENSPCOG00000009920) #34 ITGA6 (ENSPCOG00000020776) #35 DLX2 (ENSPCOG00000010310) #37 Bushbaby MODERN SPECIES 163 HOXD1 (ENSOGAG00000015712) #10 HOXD3 (ENSOGAG00000015710) #11 HOXD4 (ENSOGAG00000029168) #12 HOXD8 (ENSOGAG00000015707) #13 HOXD9 (ENSOGAG00000015697) #14 HOXD10 (ENSOGAG00000015694) #15 HOXD11 (ENSOGAG00000029520) HOXD12 (ENSOGAG00000015689) #16 HOXD13 (ENSOGAG00000027055) #17 EVX2 (ENSOGAG00000025378) #18 LNPK (ENSOGAG00000030372) #19 ENSOGAG00000030354 ENSOGAG00000026184 ATP5MC3 (ENSOGAG00000027578) #20 ATF2 (ENSOGAG00000011373) #21 CHN1 (ENSOGAG00000000894) #22 CHRNA1 (ENSOGAG00000000890) #23 WIPF1 (ENSOGAG00000016579) #24 GPR155 (ENSOGAG00000016571) #25 SCRN3 (ENSOGAG00000016569) #26 CIR1 (ENSOGAG00000016564) #27 SP9 (ENSOGAG00000034062) OLA1 (ENSOGAG00000016557) #29 SP3 (ENSOGAG00000026846) #30 CDCA7 (ENSOGAG00000000508) #31 ENSOGAG00000014054 #32 ENSOGAG00000033209 RAPGEF4 (ENSOGAG00000014048) #33 Euarchontoglires_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Tree shrew MODERN SPECIES 1857 CHN1 (ENSTBEG00000012750) #22 CHRNA1 (ENSTBEG00000012554) #23 Glires ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Lagomorpha ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160029 ENSGT00940000157735 ENSGT00390000007069 ENSGT00940000155963 Rabbit MODERN SPECIES 18 ENSOCUG00000025666 MTX2 (ENSOCUG00000008760) #9 HOXD1 (ENSOCUG00000015582) #10 HOXD3 (ENSOCUG00000014119) #11 HOXD4 (ENSOCUG00000002413) #12 ENSOCUG00000035940 #13 HOXD9 (ENSOCUG00000023956) #14 HOXD10 (ENSOCUG00000008964) #15 HOXD11 (ENSOCUG00000013942) HOXD12 (ENSOCUG00000002412) #16 HOXD13 (ENSOCUG00000029547) #17 EVX2 (ENSOCUG00000032776) #18 LNPK (ENSOCUG00000008962) #19 ATP5MC3 (ENSOCUG00000012164) #20 ATF2 (ENSOCUG00000012156) #21 CHN1 (ENSOCUG00000008134) #22 CHRNA1 (ENSOCUG00000024814) #23 ENSOCUG00000005696 ENSOCUG00000036607 GPR155 (ENSOCUG00000003683) #25 SCRN3 (ENSOCUG00000011499) #26 CIR1 (ENSOCUG00000029298) #27 ENSOCUG00000037146 OLA1 (ENSOCUG00000003574) #29 SP3 (ENSOCUG00000026678) #30 ENSOCUG00000030823 CDCA7 (ENSOCUG00000001759) #31 ENSOCUG00000030479 MAP3K20 (ENSOCUG00000015053) #32 ENSOCUG00000020911 RAPGEF4 (ENSOCUG00000015032) #33 Pika MODERN SPECIES 958 ATF2 (ENSOPRG00000003853) #21 CHN1 (ENSOPRG00000003821) #22 Rodentia ANCESTRAL SPECIES 14 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Rodentia_A ANCESTRAL SPECIES 13 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Sciuridae ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Marmotini ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Marmotini_b ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a.xb.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Squirrel MODERN SPECIES 109 HNRNPA3 (ENSSTOG00000025125) #8 ENSSTOG00000030884 MTX2 (ENSSTOG00000014688) #9 HOXD1 (ENSSTOG00000012230) #10 HOXD3 (ENSSTOG00000014680) #11 HOXD4 (ENSSTOG00000029055) #12 ENSSTOG00000023453 #13 HOXD9 (ENSSTOG00000026761) #14 HOXD10 (ENSSTOG00000003935) #15 HOXD12 (ENSSTOG00000004918) #16 HOXD13 (ENSSTOG00000004117) #17 EVX2 (ENSSTOG00000014512) #18 LNPK (ENSSTOG00000014498) #19 ENSSTOG00000013572 #20 ATF2 (ENSSTOG00000014079) #21 CHN1 (ENSSTOG00000004301) #22 CHRNA1 (ENSSTOG00000004281) #23 ENSSTOG00000004271 #24 GPR155 (ENSSTOG00000001239) #25 SCRN3 (ENSSTOG00000001236) #26 CIR1 (ENSSTOG00000001233) #27 OLA1 (ENSSTOG00000015547) #29 SP3 (ENSSTOG00000023955) #30 ENSSTOG00000009026 #31 MAP3K20 (ENSSTOG00000022529) #32 RAPGEF4 (ENSSTOG00000001706) #33 PDK1 (ENSSTOG00000006473) #34 ITGA6 (ENSSTOG00000006442) #35 DLX2 (ENSSTOG00000019803) #37 DLX1 (ENSSTOG00000012969) METAP1D (ENSSTOG00000012954) Arctic ground squirrel MODERN SPECIES 323 MTX2 (ENSUPAG00010020394) #9 ENSUPAG00010020400 HOXD1 (ENSUPAG00010020407) #10 HOXD3 (ENSUPAG00010020410) #11 HOXD4 (ENSUPAG00010020416) #12 HOXD8 (ENSUPAG00010020425) #13 HOXD9 (ENSUPAG00010020431) #14 HOXD10 (ENSUPAG00010020434) #15 HOXD11 (ENSUPAG00010020439) HOXD12 (ENSUPAG00010020440) #16 HOXD13 (ENSUPAG00010020441) #17 EVX2 (ENSUPAG00010020442) #18 LNPK (ENSUPAG00010020452) #19 ENSUPAG00010020485 #20 ATF2 (ENSUPAG00010020491) #21 CHN1 (ENSUPAG00010020575) #22 CHRNA1 (ENSUPAG00010020641) #23 WIPF1 (ENSUPAG00010020649) #24 Alpin marmot MODERN SPECIES 5 AGPS (ENSMMMG00000023778) NFE2L2 (ENSMMMG00000023776) #7 MTX2 (ENSMMMG00000023772) #9 HOXD3 (ENSMMMG00000023768) #11 HOXD4 (ENSMMMG00000023767) #12 ENSMMMG00000023765 #13 HOXD9 (ENSMMMG00000023764) #14 HOXD10 (ENSMMMG00000023763) #15 ENSMMMG00000023762 HOXD12 (ENSMMMG00000023760) #16 HOXD13 (ENSMMMG00000023759) #17 LNPK (ENSMMMG00000023755) #19 ENSMMMG00000023748 #20 ATF2 (ENSMMMG00000023733) #21 ENSMMMG00000023730 CHN1 (ENSMMMG00000023718) #22 CHRNA1 (ENSMMMG00000023717) #23 WIPF1 (ENSMMMG00000023716) #24 ENSMMMG00000023714 GPR155 (ENSMMMG00000023705) #25 ENSMMMG00000023702 #26 ENSMMMG00000023700 #26 CIR1 (ENSMMMG00000023697) #27 OLA1 (ENSMMMG00000023695) #29 SP3 (ENSMMMG00000023692) #30 CDCA7 (ENSMMMG00000023690) #31 MAP3K20 (ENSMMMG00000023687) #32 RAPGEF4 (ENSMMMG00000023674) #33 PDK1 (ENSMMMG00000023665) #34 ITGA6 (ENSMMMG00000023663) #35 DLX2 (ENSMMMG00000023658) #37 Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005003881 #8 MTX2 (ENSSVLG00005003812) #9 HOXD1 (ENSSVLG00005003762) #10 HOXD4 (ENSSVLG00005003676) #12 HOXD8 (ENSSVLG00005003645) #13 HOXD9 (ENSSVLG00005003618) #14 HOXD10 (ENSSVLG00005003599) #15 HOXD11 (ENSSVLG00005003581) HOXD12 (ENSSVLG00005003565) #16 HOXD13 (ENSSVLG00005003554) #17 EVX2 (ENSSVLG00005003539) #18 LNPK (ENSSVLG00005003500) #19 ENSSVLG00005003466 ENSSVLG00005003430 #20 ENSSVLG00005003279 #21 CHN1 (ENSSVLG00005003041) #22 CHRNA1 (ENSSVLG00005002856) #23 WIPF1 (ENSSVLG00005002786) #24 GPR155 (ENSSVLG00005002750) #25 SCRN3 (ENSSVLG00005002703) #26 CIR1 (ENSSVLG00005002678) #27 SP9 (ENSSVLG00005002657) ENSSVLG00005002643 OLA1 (ENSSVLG00005002579) #29 ENSSVLG00005002549 SP3 (ENSSVLG00005002509) #30 CDCA7 (ENSSVLG00005002383) #31 ENSSVLG00005002309 ENSSVLG00005002282 RAPGEF4 (ENSSVLG00005001732) #33 PDK1 (ENSSVLG00005001413) #34 Hystricomorpha ANCESTRAL SPECIES 20 ENSGT00940000154808.a.a ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 22 MTX2 (ENSHGLG00000004177) #9 HOXD1 (ENSHGLG00000004072) #10 HOXD3 (ENSHGLG00000003761) #11 HOXD4 (ENSHGLG00000037842) #12 ENSHGLG00000003577 #13 HOXD10 (ENSHGLG00000033462) #15 HOXD9 (ENSHGLG00000007185) #14 HOXD11 (ENSHGLG00000034527) HOXD12 (ENSHGLG00000005403) #16 HOXD13 (ENSHGLG00000050884) #17 EVX2 (ENSHGLG00000004218) #18 LNPK (ENSHGLG00000004015) #19 ENSHGLG00000040802 Atp5mc3 (ENSHGLG00000033165) #20 ENSHGLG00000018805 #21 ENSHGLG00000016114 #22 CHRNA1 (ENSHGLG00000015432) #23 ENSHGLG00000039411 #24 ENSHGLG00000036822 #24 GPR155 (ENSHGLG00000012529) #25 SCRN3 (ENSHGLG00000010172) #26 CIR1 (ENSHGLG00000008097) #27 SP9 (ENSHGLG00000007443) ENSHGLG00000040018 ENSHGLG00000046967 ENSHGLG00000006618 #29 SP3 (ENSHGLG00000007831) #30 ENSHGLG00000001810 ENSHGLG00000033105 ENSHGLG00000033114 CDCA7 (ENSHGLG00000004119) #31 Naked mole-rat female MODERN SPECIES 21 NIBAN3 (ENSHGLG00000018791) COLGALT1 (ENSHGLG00000019149) ENSHGLG00000009262 ENSHGLG00000036279 ENSHGLG00000042232 ENSHGLG00000033559 ENSHGLG00000050909 ENSHGLG00000045781 ENSHGLG00000039462 ENSHGLG00000003634 ENSHGLG00000046308 ENSHGLG00000044420 ENSHGLG00000049463 ENSHGLG00000035026 ENSHGLG00000044227 ENSHGLG00000032960 #22 ENSHGLG00000032173 ENSHGLG00000034587 ENSHGLG00000002680 ENSHGLG00000040658 ENSHGLG00000010518 S1PR4 (ENSHGLG00000042045) GNA15 (ENSHGLG00000033945) GNA11 (ENSHGLG00000035049) AES (ENSHGLG00000036417) TLE2 (ENSHGLG00000013600) ENSHGLG00000037855 ENSHGLG00000049208 ENSHGLG00000016167 FZR1 (ENSHGLG00000019224) ENSHGLG00000014588 Hystricomorpha_a ANCESTRAL SPECIES 17 ENSGT00940000154808.a.a ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Hystricomorpha_b ANCESTRAL SPECIES 24 ENSGT00940000154808.a.a ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296.t #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Long-tailed chinchilla MODERN SPECIES 156 ATP5MC3 (ENSCLAG00000002573) #20 ATF2 (ENSCLAG00000002705) #21 CHN1 (ENSCLAG00000003215) #22 CHRNA1 (ENSCLAG00000003608) #23 ENSCLAG00000002683 #24 GPR155 (ENSCLAG00000002801) #25 SCRN3 (ENSCLAG00000003139) #26 CIR1 (ENSCLAG00000003669) #27 SP9 (ENSCLAG00000003831) OLA1 (ENSCLAG00000008657) #29 SP3 (ENSCLAG00000008720) #30 ENSCLAG00000008943 ENSCLAG00000017678 CDCA7 (ENSCLAG00000003995) #31 ENSCLAG00000006706 RAPGEF4 (ENSCLAG00000003849) #33 PDK1 (ENSCLAG00000005471) #34 ITGA6 (ENSCLAG00000006496) #35 Degu MODERN SPECIES 106 HOXD1 (ENSODEG00000008961) #10 HOXD3 (ENSODEG00000009722) #11 HOXD4 (ENSODEG00000010297) #12 ENSODEG00000010496 #13 HOXD9 (ENSODEG00000008626) #14 HOXD10 (ENSODEG00000010382) #15 ENSODEG00000010934 HOXD12 (ENSODEG00000008376) #16 HOXD13 (ENSODEG00000008793) #17 EVX2 (ENSODEG00000010771) #18 ENSODEG00000008992 LNPK (ENSODEG00000010046) #19 ENSODEG00000010385 ENSODEG00000010951 #20 ATF2 (ENSODEG00000010947) #21 CHN1 (ENSODEG00000008560) #22 CHRNA1 (ENSODEG00000010458) #23 ENSODEG00000019598 ENSODEG00000008975 #24 ENSODEG00000008878 #24 GPR155 (ENSODEG00000009263) #25 ENSODEG00000009961 #26 CIR1 (ENSODEG00000009325) #27 SP9 (ENSODEG00000009569) OLA1 (ENSODEG00000009011) #29 ENSODEG00000010224 ENSODEG00000019637 SP3 (ENSODEG00000008679) #30 CDCA7 (ENSODEG00000009927) #31 ENSODEG00000009783 #32 RAPGEF4 (ENSODEG00000010386) #33 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 3 ENSCPOG00000027250 MTX2 (ENSCPOG00000011099) #9 HOXD1 (ENSCPOG00000005509) #10 HOXD3 (ENSCPOG00000034932) #11 HOXD4 (ENSCPOG00000036552) #12 HOXD8 (ENSCPOG00000015005) #13 HOXD9 (ENSCPOG00000015006) #14 HOXD10 (ENSCPOG00000011368) #15 ENSCPOG00000019766 HOXD12 (ENSCPOG00000005496) #16 HOXD13 (ENSCPOG00000006722) #17 EVX2 (ENSCPOG00000006711) #18 LNPK (ENSCPOG00000010971) #19 ATP5MC3 (ENSCPOG00000040161) #20 ATF2 (ENSCPOG00000004637) #21 ENSCPOG00000002789 #22 CHRNA1 (ENSCPOG00000000036) #23 ENSCPOG00000034131 #24 GPR155 (ENSCPOG00000010286) #25 SCRN3 (ENSCPOG00000010281) #26 CIR1 (ENSCPOG00000010275) #27 SP9 (ENSCPOG00000032651) OLA1 (ENSCPOG00000031110) #29 SP3 (ENSCPOG00000002942) #30 CDCA7 (ENSCPOG00000011784) #31 MAP3K20 (ENSCPOG00000040705) #32 RAPGEF4 (ENSCPOG00000010605) #33 PDK1 (ENSCPOG00000008434) #34 ITGA6 (ENSCPOG00000008418) #35 DLX2 (ENSCPOG00000040000) #37 DLX1 (ENSCPOG00000040135) Guinea pig MODERN SPECIES 94 ENSCPOG00000027159 ENSCPOG00000001770 #22 ENSCPOG00000021568 ENSCPOG00000002569 YTHDC1 (ENSCPOG00000010929) TMPRSS11E (ENSCPOG00000012804) ENSCPOG00000026992 TMPRSS11F (ENSCPOG00000031769) ENSCPOG00000025643 TMPRSS11A (ENSCPOG00000036189) TMPRSS11D (ENSCPOG00000010047) ENSCPOG00000034504 GNRHR (ENSCPOG00000014609) UBA6 (ENSCPOG00000001877) STAP1 (ENSCPOG00000001874) CENPC (ENSCPOG00000001871) ENSCPOG00000035209 Rodentia_B ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Kangaroo rat MODERN SPECIES 324 Agps (ENSDORG00000006480) Nfe2l2 (ENSDORG00000030173) #7 Hnrnpa3 (ENSDORG00000011155) #8 Mtx2 (ENSDORG00000003848) #9 Hoxd1 (ENSDORG00000009445) #10 Hoxd3 (ENSDORG00000029389) #11 Hoxd4 (ENSDORG00000028681) #12 ENSDORG00000027655 #13 Hoxd10 (ENSDORG00000009436) #15 ENSDORG00000029219 Hoxd12 (ENSDORG00000009434) #16 Evx2 (ENSDORG00000009432) #18 Lnpk (ENSDORG00000015736) #19 Atp5g3 (ENSDORG00000012973) #20 Atf2 (ENSDORG00000024409) #21 Chn1 (ENSDORG00000002182) #22 Chrna1 (ENSDORG00000001136) #23 ENSDORG00000027952 #24 Gpr155 (ENSDORG00000013683) #25 ENSDORG00000013682 #26 Cir1 (ENSDORG00000013676) #27 Sp9 (ENSDORG00000025534) ENSDORG00000008681 #29 Sp3 (ENSDORG00000009045) #30 Cdca7 (ENSDORG00000001759) #31 ENSDORG00000005439 #32 Rapgef4 (ENSDORG00000005529) #33 Pdk1 (ENSDORG00000000069) #34 Itga6 (ENSDORG00000005156) #35 Dlx2 (ENSDORG00000030062) #37 Dlx1 (ENSDORG00000030117) Myomorpha ANCESTRAL SPECIES 10 ENSGT00940000153147.m.a.a.a.b.a.b.p #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Lesser Egyptian jerboa MODERN SPECIES 75 Agps (ENSJJAG00000016720) Nfe2l2 (ENSJJAG00000019899) #7 ENSJJAG00000000149 #8 ENSJJAG00000013228 #9 ENSJJAG00000019952 Hoxd1 (ENSJJAG00000019059) #10 Hoxd10 (ENSJJAG00000011932) #15 Hoxd11 (ENSJJAG00000012344) Hoxd12 (ENSJJAG00000016261) #16 Hoxd13 (ENSJJAG00000016388) #17 Evx2 (ENSJJAG00000017484) #18 Lnpk (ENSJJAG00000011710) #19 ENSJJAG00000013766 Atp5g3 (ENSJJAG00000022403) #20 Atf2 (ENSJJAG00000015836) #21 Chn1 (ENSJJAG00000015001) #22 ENSJJAG00000014124 Chrna1 (ENSJJAG00000018710) #23 Scrn3 (ENSJJAG00000021027) #26 Cir1 (ENSJJAG00000010849) #27 Sp9 (ENSJJAG00000020056) ENSJJAG00000022958 #29 Sp3 (ENSJJAG00000011138) #30 Cdca7 (ENSJJAG00000014387) #31 ENSJJAG00000016192 #32 Rapgef4 (ENSJJAG00000009830) #33 ENSJJAG00000015889 Pdk1 (ENSJJAG00000020102) #34 Itga6 (ENSJJAG00000012292) #35 Dlx2 (ENSJJAG00000019163) #37 Dlx1 (ENSJJAG00000008558) Muroidea ANCESTRAL SPECIES 34 ENSGT00940000153147.m.a.a.a.b.a.b.p #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Upper Galilee mountains blind mole rat MODERN SPECIES 1735 ENSNGAG00000021745 ##28 Mtx2 (ENSNGAG00000020555) #9 Hoxd1 (ENSNGAG00000021714) #10 Hoxd3 (ENSNGAG00000021055) #11 Hoxd4 (ENSNGAG00000020270) #12 Hoxd8 (ENSNGAG00000011799) #13 Hoxd9 (ENSNGAG00000011105) #14 Hoxd10 (ENSNGAG00000023868) #15 Hoxd11 (ENSNGAG00000023438) Hoxd12 (ENSNGAG00000023455) #16 Hoxd13 (ENSNGAG00000023727) #17 Evx2 (ENSNGAG00000023877) #18 Lnpk (ENSNGAG00000023466) #19 Atp5g3 (ENSNGAG00000004748) #20 Atf2 (ENSNGAG00000003870) #21 Chn1 (ENSNGAG00000021893) #22 Chrna1 (ENSNGAG00000023534) #23 ENSNGAG00000022478 #24 Gpr155 (ENSNGAG00000019246) #25 Scrn3 (ENSNGAG00000008783) #26 Cir1 (ENSNGAG00000023091) #27 Sp9 (ENSNGAG00000002858) Ola1 (ENSNGAG00000017639) #29 ENSNGAG00000012551 ENSNGAG00000011265 #30 Cdca7 (ENSNGAG00000005943) #31 ENSNGAG00000023564 #32 Rapgef4 (ENSNGAG00000024160) #33 ENSNGAG00000021913 #34 Itga6 (ENSNGAG00000023769) #35 Dlx2 (ENSNGAG00000022793) #37 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000153147.m.a.a.a.b.a.b.p #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Cricetidae ANCESTRAL SPECIES 12 ENSGT00940000153147.m.a.a.a.b.a.b.p #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Cricetinae ANCESTRAL SPECIES 1 ENSGT00940000154808.a.a ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00940000171387 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 ENSGT00940000157735 Chinese hamster chok1gshd MODERN SPECIES 188 ENSCGRG00001014512 Hoxd1 (ENSCGRG00001011572) #10 Hoxd3 (ENSCGRG00001011863) #11 Hoxd4 (ENSCGRG00001012360) #12 Hoxd8 (ENSCGRG00001013130) #13 Hoxd9 (ENSCGRG00001005991) #14 Hoxd10 (ENSCGRG00001008302) #15 Hoxd11 (ENSCGRG00001010386) Hoxd12 (ENSCGRG00001000877) #16 Hoxd13 (ENSCGRG00001001661) #17 Evx2 (ENSCGRG00001003649) #18 ENSCGRG00001006802 Lnpk (ENSCGRG00001011515) #19 Atp5g3 (ENSCGRG00001012041) #20 Atf2 (ENSCGRG00001015584) #21 Chn1 (ENSCGRG00001019152) #22 ENSCGRG00001019803 Chrna1 (ENSCGRG00001020291) #23 ENSCGRG00001021853 Gpr155 (ENSCGRG00001014219) #25 Scrn3 (ENSCGRG00001014709) #26 Cir1 (ENSCGRG00001015518) #27 Sp9 (ENSCGRG00001024896) Ola1 (ENSCGRG00001001469) #29 ENSCGRG00001003688 ENSCGRG00001005867 #30 ENSCGRG00001009149 Cdca7 (ENSCGRG00001013059) #31 Map3k20 (ENSCGRG00001013908) #32 Rapgef4 (ENSCGRG00001015061) #33 ENSCGRG00001016131 #34 Golden Hamster MODERN SPECIES 618 Mtx2 (ENSMAUG00000017870) #9 Hoxd1 (ENSMAUG00000018401) #10 Hoxd3 (ENSMAUG00000018318) #11 Hoxd4 (ENSMAUG00000018545) #12 Hoxd8 (ENSMAUG00000018092) #13 Hoxd9 (ENSMAUG00000018538) #14 Hoxd10 (ENSMAUG00000016731) #15 ENSMAUG00000020249 Hoxd12 (ENSMAUG00000018416) #16 Hoxd13 (ENSMAUG00000017185) #17 Evx2 (ENSMAUG00000020383) #18 Lnpk (ENSMAUG00000018821) #19 ENSMAUG00000020495 Atp5g3 (ENSMAUG00000017685) #20 Atf2 (ENSMAUG00000018366) #21 Chn1 (ENSMAUG00000018455) #22 Chrna1 (ENSMAUG00000017924) #23 ENSMAUG00000019796 Gpr155 (ENSMAUG00000019481) #25 Scrn3 (ENSMAUG00000020703) #26 ENSMAUG00000019383 #27 Sp9 (ENSMAUG00000020520) Ola1 (ENSMAUG00000019168) #29 ENSMAUG00000001485 ENSMAUG00000020351 Cdca7 (ENSMAUG00000020932) #31 Map3k20 (ENSMAUG00000021309) #32 Rapgef4 (ENSMAUG00000021185) #33 Pdk1 (ENSMAUG00000019499) #34 Itga6 (ENSMAUG00000020187) #35 Dlx2 (ENSMAUG00000021831) #37 Cricetidae_B ANCESTRAL SPECIES 7 ENSGT00940000153147.m.a.a.a.b.a.b.p #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00940000160029 Prairie vole MODERN SPECIES 12 ENSMOCG00000019409 ##28 Mtx2 (ENSMOCG00000017110) #9 Hoxd1 (ENSMOCG00000014086) #10 Hoxd4 (ENSMOCG00000013646) #12 Hoxd3 (ENSMOCG00000022552) #11 Hoxd8 (ENSMOCG00000022746) #13 Hoxd9 (ENSMOCG00000005870) #14 Hoxd10 (ENSMOCG00000006052) #15 Hoxd11 (ENSMOCG00000019226) Hoxd12 (ENSMOCG00000018953) #16 Hoxd13 (ENSMOCG00000014618) #17 Evx2 (ENSMOCG00000010466) #18 Lnpk (ENSMOCG00000022345) #19 ENSMOCG00000012786 #20 Atf2 (ENSMOCG00000015301) #21 Chn1 (ENSMOCG00000005574) #22 Chrna1 (ENSMOCG00000020367) #23 ENSMOCG00000014660 Gpr155 (ENSMOCG00000003950) #25 Scrn3 (ENSMOCG00000018966) #26 Cir1 (ENSMOCG00000017545) #27 Sp9 (ENSMOCG00000019136) ENSMOCG00000003125 #29 ENSMOCG00000003269 Sp3 (ENSMOCG00000022929) #30 Cdca7 (ENSMOCG00000015927) #31 Map3k20 (ENSMOCG00000001753) #32 Rapgef4 (ENSMOCG00000020670) #33 Pdk1 (ENSMOCG00000020171) #34 Itga6 (ENSMOCG00000013969) #35 Dlx2 (ENSMOCG00000011375) #37 Northern American deer mouse MODERN SPECIES 17 Hoxd1 (ENSPEMG00000021389) #10 Hoxd3 (ENSPEMG00000028862) #11 Hoxd4 (ENSPEMG00000024627) #12 ENSPEMG00000029322 ENSPEMG00000028623 #13 Hoxd9 (ENSPEMG00000006162) #14 Hoxd10 (ENSPEMG00000030445) #15 ENSPEMG00000018816 Hoxd12 (ENSPEMG00000019240) #16 Hoxd13 (ENSPEMG00000022412) #17 Evx2 (ENSPEMG00000022145) #18 Lnpk (ENSPEMG00000017827) #19 ENSPEMG00000008662 Atp5g3 (ENSPEMG00000023766) #20 Atf2 (ENSPEMG00000021625) #21 Chn1 (ENSPEMG00000022535) #22 Chrna1 (ENSPEMG00000012571) #23 Wipf1 (ENSPEMG00000013848) #24 Gpr155 (ENSPEMG00000022602) #25 Scrn3 (ENSPEMG00000022424) #26 Cir1 (ENSPEMG00000022223) #27 Sp9 (ENSPEMG00000029035) Ola1 (ENSPEMG00000021970) #29 Sp3 (ENSPEMG00000022766) #30 Cdca7 (ENSPEMG00000022184) #31 Map3k20 (ENSPEMG00000000421) #32 Rapgef4 (ENSPEMG00000009780) #33 Pdk1 (ENSPEMG00000002841) #34 Itga6 (ENSPEMG00000021809) #35 Dlx2 (ENSPEMG00000028459) #37 Dlx1 (ENSPEMG00000026584) Murinae ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Rat DUPLICATION Rat MODERN SPECIES 13 Hoxd1 (ENSRNOG00000001572) #10 Hoxd3 (ENSRNOG00000001577) #11 AABR07052559.1 (ENSRNOG00000053144) Hoxd4 (ENSRNOG00000001578) #12 Hoxd8 (ENSRNOG00000071108) #13 Hoxd9 (ENSRNOG00000001580) #14 Hoxd10 (ENSRNOG00000001581) #15 Hoxd11 (ENSRNOG00000069591) Hoxd12 (ENSRNOG00000001587) #16 Hoxd13 (ENSRNOG00000001588) #17 Evx2 (ENSRNOG00000001589) #18 Lnpk (ENSRNOG00000001593) #19 Atp5mc3 (ENSRNOG00000001596) #20 Atf2 (ENSRNOG00000001597) #21 ENSRNOG00000068403 Chn1 (ENSRNOG00000017939) #22 Chrna1 (ENSRNOG00000018286) #23 Rbx1-ps2 (ENSRNOG00000067031) Wipf1 (ENSRNOG00000018406) #24 Gpr155 (ENSRNOG00000018485) #25 Scrn3 (ENSRNOG00000018657) #26 Cir1 (ENSRNOG00000018719) #27 Sp9 (ENSRNOG00000028187) ENSRNOG00000032195 Ola1 (ENSRNOG00000019047) #29 Sp3 (ENSRNOG00000060479) #30 AC120066.1 (ENSRNOG00000001510) LOC120101567 (ENSRNOG00000028492) Eno1-ps1 (ENSRNOG00000028543) AABR07052519.1 (ENSRNOG00000029423) Cdca7 (ENSRNOG00000001514) #31 Rat MODERN SPECIES 9 LOC102549410 (ENSRNOG00000068672) Tmx3 (ENSRNOG00000045740) Dok6 (ENSRNOG00000038190) Cd226 (ENSRNOG00000038197) LOC689166 (ENSRNOG00000004661) Rttn (ENSRNOG00000038200) AABR07032856.1 (ENSRNOG00000038211) #22 ENSRNOG00000067774 Socs6 (ENSRNOG00000038212) ENSRNOG00000064792 RGD1560813 (ENSRNOG00000013622) RGD1559726 (ENSRNOG00000034073) Cbln2 (ENSRNOG00000013654) Neto1 (ENSRNOG00000014006) ENSRNOG00000067088 Fbxo15 (ENSRNOG00000038225) Timm21 (ENSRNOG00000015142) Cyb5a (ENSRNOG00000070068) LOC100359752 (ENSRNOG00000038241) Dipk1c (ENSRNOG00000015448) Cndp2 (ENSRNOG00000015591) Cndp1 (ENSRNOG00000027739) Mus ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Mus_A ANCESTRAL SPECIES ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436 #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #8 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.k #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 Mouse MODERN SPECIES 11 Hnrnpa3 (ENSMUSG00000059005) #8 Mtx2 (ENSMUSG00000027099) #9 Hoxd1 (ENSMUSG00000042448) #10 Hoxd4 (ENSMUSG00000101174) #12 Hoxd3 (ENSMUSG00000079277) #11 Hoxd8 (ENSMUSG00000027102) #13 Hoxd9 (ENSMUSG00000043342) #14 Hoxd10 (ENSMUSG00000050368) #15 Hoxd11 (ENSMUSG00000042499) Hoxd12 (ENSMUSG00000001823) #16 Hoxd13 (ENSMUSG00000001819) #17 Evx2 (ENSMUSG00000001815) #18 Lnpk (ENSMUSG00000009207) #19 Atp5g3 (ENSMUSG00000018770) #20 Atf2 (ENSMUSG00000027104) #21 Chn1 (ENSMUSG00000056486) #22 Chrna1 (ENSMUSG00000027107) #23 Wipf1 (ENSMUSG00000075284) #24 Gpr155 (ENSMUSG00000041762) #25 Scrn3 (ENSMUSG00000008226) #26 Cir1 (ENSMUSG00000041777) #27 Sp9 (ENSMUSG00000068859) Ola1 (ENSMUSG00000027108) #29 Sp3 (ENSMUSG00000027109) #30 Cdca7 (ENSMUSG00000055612) #31 Map3k20 (ENSMUSG00000004085) #32 Rapgef4 (ENSMUSG00000049044) #33 Pdk1 (ENSMUSG00000006494) #34 Itga6 (ENSMUSG00000027111) #35 Dlx2 (ENSMUSG00000023391) #37 Dlx1 (ENSMUSG00000041911) Mus_C ANCESTRAL SPECIES ENSGT00940000153147.m.b ##28 ENSGT00950000182919.C #9 ENSGT00940000161892 #10 ENSGT00940000160027 #11 ENSGT00940000157270 #12 ENSGT00940000161653 #13 ENSGT00940000161503 #14 ENSGT00940000158266 #15 ENSGT00940000161308 ENSGT00940000159938 #16 ENSGT00940000161457 #17 ENSGT00940000161025 #18 ENSGT00390000001859 #19 ENSGT00940000154298.a.a #20 ENSGT00940000156582 #21 ENSGT01030000234635.a.b.a.b.b.a.a #22 ENSGT00940000156851 #23 ENSGT00910000144296 #24 ENSGT00390000004153 #25 ENSGT00390000013474.a #26 ENSGT00730000111135 #27 ENSGT00940000162304 ENSGT00390000000673.b #29 ENSGT00940000155099 #30 ENSGT00940000155436.k #31 ENSGT00940000161352 #32 ENSGT00940000156075.a.a #33 ENSGT01030000234646.B.a.a.b #34 ENSGT00940000155353 #35 ENSGT00940000160127 #37 ENSGT00960000192081 spretus MODERN SPECIES 11 Mtx2 (MGP_SPRETEiJ_G0024600) #9 Hoxd1 (MGP_SPRETEiJ_G0024599) #10 MGP_SPRETEiJ_G0024598 #12 Hoxd4 (MGP_SPRETEiJ_G0024597) #12 Hoxd3 (MGP_SPRETEiJ_G0024596) #11 Hoxd8 (MGP_SPRETEiJ_G0024595) #13 Hoxd9 (MGP_SPRETEiJ_G0024594) #14 Hoxd10 (MGP_SPRETEiJ_G0024593) #15 Hoxd11 (MGP_SPRETEiJ_G0024592) Hoxd12 (MGP_SPRETEiJ_G0024591) #16 Hoxd13 (MGP_SPRETEiJ_G0024590) #17 Evx2 (MGP_SPRETEiJ_G0024589) #18 Lnpk (MGP_SPRETEiJ_G0024588) #19 Atp5g3 (MGP_SPRETEiJ_G0024587) #20 Atf2 (MGP_SPRETEiJ_G0024586) #21 Chn1 (MGP_SPRETEiJ_G0024585) #22 Chrna1 (MGP_SPRETEiJ_G0024584) #23 Wipf1 (MGP_SPRETEiJ_G0024583) #24 Gpr155 (MGP_SPRETEiJ_G0024582) #25 Scrn3 (MGP_SPRETEiJ_G0024581) #26 Cir1 (MGP_SPRETEiJ_G0024580) #27 Sp9 (MGP_SPRETEiJ_G0024579) Ola1 (MGP_SPRETEiJ_G0024578) #29 MGP_SPRETEiJ_G0024577 Sp3 (MGP_SPRETEiJ_G0024576) #30 Cdca7 (MGP_SPRETEiJ_G0024575) #31 Map3k20 (MGP_SPRETEiJ_G0024574) #32 Rapgef4 (MGP_SPRETEiJ_G0024573) #33 Pdk1 (MGP_SPRETEiJ_G0024572) #34 Itga6 (MGP_SPRETEiJ_G0024571) #35 Dlx2 (MGP_SPRETEiJ_G0024570) #37 Steppe mouse MODERN SPECIES 3326 Hoxd1 (ENSMSIG00000006137) #10 Hoxd3 (ENSMSIG00000006158) #11 ENSMSIG00000006186 #12 Hoxd8 (ENSMSIG00000006283) #13 Hoxd9 (ENSMSIG00000006304) #14 Hoxd10 (ENSMSIG00000006313) #15 Hoxd11 (ENSMSIG00000006326) Hoxd12 (ENSMSIG00000006333) #16 Hoxd13 (ENSMSIG00000006348) #17 Evx2 (ENSMSIG00000006361) #18 Lnpk (ENSMSIG00000006386) #19 ENSMSIG00000006495 Atp5g3 (ENSMSIG00000006512) #20 Atf2 (ENSMSIG00000006546) #21 ENSMSIG00000006659 Chn1 (ENSMSIG00000006692) #22 Chrna1 (ENSMSIG00000006852) #23 Wipf1 (ENSMSIG00000006899) #24 Gpr155 (ENSMSIG00000006975) #25 Scrn3 (ENSMSIG00000007111) #26 Cir1 (ENSMSIG00000007130) #27 Sp9 (ENSMSIG00000007182) Ola1 (ENSMSIG00000007200) #29 ENSMSIG00000007302 ENSMSIG00000007310 Sp3 (ENSMSIG00000007322) #30 ENSMSIG00000007399 Cdca7 (ENSMSIG00000007687) #31 Map3k20 (ENSMSIG00000007713) #32 Rapgef4 (ENSMSIG00000007773) #33 Pdk1 (ENSMSIG00000008171) #34 Ryukyu mouse MODERN SPECIES 11 Mtx2 (MGP_CAROLIEiJ_G0023677) #9 Hoxd1 (MGP_CAROLIEiJ_G0023676) #10 MGP_CAROLIEiJ_G0023675 #12 Hoxd4 (MGP_CAROLIEiJ_G0023674) #12 Hoxd3 (MGP_CAROLIEiJ_G0023673) #11 Hoxd8 (MGP_CAROLIEiJ_G0023672) #13 Hoxd9 (MGP_CAROLIEiJ_G0023671) #14 Hoxd10 (MGP_CAROLIEiJ_G0023670) #15 Hoxd11 (MGP_CAROLIEiJ_G0023669) Hoxd12 (MGP_CAROLIEiJ_G0023668) #16 Hoxd13 (MGP_CAROLIEiJ_G0023667) #17 Evx2 (MGP_CAROLIEiJ_G0023666) #18 Lnpk (MGP_CAROLIEiJ_G0023665) #19 Atp5g3 (MGP_CAROLIEiJ_G0023664) #20 Atf2 (MGP_CAROLIEiJ_G0023663) #21 Chn1 (MGP_CAROLIEiJ_G0023662) #22 Chrna1 (MGP_CAROLIEiJ_G0023661) #23 Wipf1 (MGP_CAROLIEiJ_G0023660) #24 Gpr155 (MGP_CAROLIEiJ_G0023659) #25 Scrn3 (MGP_CAROLIEiJ_G0023658) #26 Cir1 (MGP_CAROLIEiJ_G0023657) #27 Sp9 (MGP_CAROLIEiJ_G0023656) Ola1 (MGP_CAROLIEiJ_G0023655) #29 MGP_CAROLIEiJ_G0023654 Sp3 (MGP_CAROLIEiJ_G0023653) #30 Cdca7 (MGP_CAROLIEiJ_G0023652) #31 Map3k20 (MGP_CAROLIEiJ_G0023651) #32 Rapgef4 (MGP_CAROLIEiJ_G0023650) #33 Pdk1 (MGP_CAROLIEiJ_G0023649) #34 Itga6 (MGP_CAROLIEiJ_G0023648) #35 Dlx2 (MGP_CAROLIEiJ_G0023647) #37 Shrew mouse MODERN SPECIES 16 Mtx2 (MGP_PahariEiJ_G0025129) #9 Hoxd1 (MGP_PahariEiJ_G0025128) #10 MGP_PahariEiJ_G0025127 #12 Hoxd4 (MGP_PahariEiJ_G0025126) #12 Hoxd3 (MGP_PahariEiJ_G0025125) #11 Hoxd8 (MGP_PahariEiJ_G0025124) #13 Hoxd9 (MGP_PahariEiJ_G0025123) #14 Hoxd10 (MGP_PahariEiJ_G0025122) #15 Hoxd11 (MGP_PahariEiJ_G0025121) Hoxd12 (MGP_PahariEiJ_G0025120) #16 Hoxd13 (MGP_PahariEiJ_G0025119) #17 Evx2 (MGP_PahariEiJ_G0025118) #18 Lnpk (MGP_PahariEiJ_G0025117) #19 Atp5g3 (MGP_PahariEiJ_G0025116) #20 Atf2 (MGP_PahariEiJ_G0025115) #21 MGP_PahariEiJ_G0025114 #22 Chrna1 (MGP_PahariEiJ_G0025113) #23 Wipf1 (MGP_PahariEiJ_G0025112) #24 Gpr155 (MGP_PahariEiJ_G0025111) #25 Scrn3 (MGP_PahariEiJ_G0025110) #26 MGP_PahariEiJ_G0025109 #27 Sp9 (MGP_PahariEiJ_G0025108) Ola1 (MGP_PahariEiJ_G0025107) #29 MGP_PahariEiJ_G0025106 Sp3 (MGP_PahariEiJ_G0025105) #30 Cdca7 (MGP_PahariEiJ_G0025104) #31 Map3k20 (MGP_PahariEiJ_G0025103) #32 Rapgef4 (MGP_PahariEiJ_G0025102) #33 Pdk1 (MGP_PahariEiJ_G0025101) #34 Itga6 (MGP_PahariEiJ_G0025100) #35 Dlx2 (MGP_PahariEiJ_G0025099) #37