Euteleostomi	ANCESTRAL SPECIES	116		ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000172494	ENSGT00940000159777 #32	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254
Sarcopterygii	ANCESTRAL SPECIES	80	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.b ##35	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00940000165146
Amniota	ANCESTRAL SPECIES	4	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a
Mammalia	ANCESTRAL SPECIES	10	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a
Theria	ANCESTRAL SPECIES	11	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.b
Eutheria	ANCESTRAL SPECIES	6	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Primates	ANCESTRAL SPECIES	8	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Bushbaby	MODERN SPECIES	178	RAI14 (ENSOGAG00000014808) #7	TTC23L (ENSOGAG00000014818) #8	RAD1 (ENSOGAG00000014822) #9	BRIX1 (ENSOGAG00000014827) #10	DNAJC21 (ENSOGAG00000001468) #11	AGXT2 (ENSOGAG00000001469) #12	PRLR (ENSOGAG00000001473) #13	SPEF2 (ENSOGAG00000014357) #14	CAPSL (ENSOGAG00000025579) #15	UGT3A2 (ENSOGAG00000007228) #16	LMBRD2 (ENSOGAG00000007231) #17	ENSOGAG00000007236 #18	NADK2 (ENSOGAG00000007242) #19	RANBP3L (ENSOGAG00000007246) #20	SLC1A3 (ENSOGAG00000004888) #21	NIPBL (ENSOGAG00000006135) #22	ENSOGAG00000012406 #23	NUP155 (ENSOGAG00000012413) #24	WDR70 (ENSOGAG00000006649) #25	GDNF (ENSOGAG00000001397) #26	EGFLAM (ENSOGAG00000002067) #27	LIFR (ENSOGAG00000002071) #28	OSMR (ENSOGAG00000006678) #29	RICTOR (ENSOGAG00000024700) #30	FYB1 (ENSOGAG00000009935) #31	C9 (ENSOGAG00000012072) #32	DAB2 (ENSOGAG00000015730) #33	ENSOGAG00000029379 #34	PTGER4 (ENSOGAG00000024975) #35	TTC33 (ENSOGAG00000011946) #36	PRKAA1 (ENSOGAG00000011950) #37
Lemuriformes	ANCESTRAL SPECIES	47	ENSGT00500000044913.c #9	ENSGT00390000014467.m #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00940000163740.c.c	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Mouse lemur	MODERN SPECIES	3	RAD1 (ENSMICG00000005664) #9	BRIX1 (ENSMICG00000005672) #10	DNAJC21 (ENSMICG00000005679) #11	AGXT2 (ENSMICG00000005689) #12	PRLR (ENSMICG00000005697) #13	SPEF2 (ENSMICG00000001636) #14	IL7R (ENSMICG00000001648)	CAPSL (ENSMICG00000042256) #15	ENSMICG00000026841	ENSMICG00000017827	LMBRD2 (ENSMICG00000017828) #17	SKP2 (ENSMICG00000017829) #18	NADK2 (ENSMICG00000031635) #19	RANBP3L (ENSMICG00000017831) #20	SLC1A3 (ENSMICG00000012786) #21	NIPBL (ENSMICG00000012468) #22	CPLANE1 (ENSMICG00000012526) #23	NUP155 (ENSMICG00000017202) #24	WDR70 (ENSMICG00000027615) #25	GDNF (ENSMICG00000038777) #26	EGFLAM (ENSMICG00000017230) #27	LIFR (ENSMICG00000017232) #28	OSMR (ENSMICG00000006658) #29	RICTOR (ENSMICG00000006675) #30	FYB1 (ENSMICG00000030963) #31	C9 (ENSMICG00000006710) #32	ENSMICG00000026620	DAB2 (ENSMICG00000006730) #33	ENSMICG00000047886 #36	PTGER4 (ENSMICG00000027186) #35	PRKAA1 (ENSMICG00000036665) #37
Lemuriformes_a	ANCESTRAL SPECIES	131						ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00940000163740.c.c	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Greater bamboo lemur	MODERN SPECIES	547									ENSPSMG00000004355 #16	ENSPSMG00000004345	LMBRD2 (ENSPSMG00000004334) #17	SKP2 (ENSPSMG00000004287) #18	NADK2 (ENSPSMG00000004172) #19	RANBP3L (ENSPSMG00000004080) #20	SLC1A3 (ENSPSMG00000003924) #21	NIPBL (ENSPSMG00000003534) #22	CPLANE1 (ENSPSMG00000003356) #23	NUP155 (ENSPSMG00000003091) #24	WDR70 (ENSPSMG00000002916) #25	GDNF (ENSPSMG00000002888) #26	ENSPSMG00000002879	EGFLAM (ENSPSMG00000002763) #27	LIFR (ENSPSMG00000002683) #28	ENSPSMG00000002662 #29	RICTOR (ENSPSMG00000002540) #30	FYB1 (ENSPSMG00000002386) #31	C9 (ENSPSMG00000002380) #32	DAB2 (ENSPSMG00000002035) #33
Coquerels sifaka	MODERN SPECIES	88							IL7R (ENSPCOG00000002642)	CAPSL (ENSPCOG00000015639) #15	ENSPCOG00000015550 #16	ENSPCOG00000026238 #16	LMBRD2 (ENSPCOG00000015557) #17	SKP2 (ENSPCOG00000025797) #18	NADK2 (ENSPCOG00000020255) #19	RANBP3L (ENSPCOG00000018367) #20	SLC1A3 (ENSPCOG00000003394) #21	NIPBL (ENSPCOG00000021900) #22	CPLANE1 (ENSPCOG00000021498) #23	NUP155 (ENSPCOG00000013228) #24	WDR70 (ENSPCOG00000022281) #25	GDNF (ENSPCOG00000022994) #26	EGFLAM (ENSPCOG00000018965) #27	LIFR (ENSPCOG00000023656) #28	ENSPCOG00000010776 #29	RICTOR (ENSPCOG00000027952) #30	FYB1 (ENSPCOG00000026925) #31	ENSPCOG00000004423 #32	DAB2 (ENSPCOG00000022554) #33	PTGER4 (ENSPCOG00000022906) #35	TTC33 (ENSPCOG00000024676) #36	PRKAA1 (ENSPCOG00000023955) #37	RPL37 (ENSPCOG00000025802)
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Macaca	ANCESTRAL SPECIES	7	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00940000165039	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Pig-tailed macaque	MODERN SPECIES	504	BRIX1 (ENSMNEG00000039324) #10	DNAJC21 (ENSMNEG00000035975) #11	AGXT2 (ENSMNEG00000032982) #12	PRLR (ENSMNEG00000030216) #13	SPEF2 (ENSMNEG00000032522) #14	IL7R (ENSMNEG00000031607)	CAPSL (ENSMNEG00000035600) #15	UGT3A1 (ENSMNEG00000038697)	ENSMNEG00000001785	LMBRD2 (ENSMNEG00000032535) #17	ENSMNEG00000030813	SKP2 (ENSMNEG00000045203) #18	NADK2 (ENSMNEG00000013281) #19	RANBP3L (ENSMNEG00000038063) #20	SLC1A3 (ENSMNEG00000039089) #21	NIPBL (ENSMNEG00000022277) #22	CPLANE1 (ENSMNEG00000029968) #23	ENSMNEG00000042623	NUP155 (ENSMNEG00000039083) #24	WDR70 (ENSMNEG00000029911) #25	ENSMNEG00000045383	GDNF (ENSMNEG00000035033) #26	EGFLAM (ENSMNEG00000032080) #27	ENSMNEG00000024358	LIFR (ENSMNEG00000035771) #28	OSMR (ENSMNEG00000029404) #29	ENSMNEG00000040659	RICTOR (ENSMNEG00000035093) #30	FYB1 (ENSMNEG00000033176) #31	C9 (ENSMNEG00000036689) #32	DAB2 (ENSMNEG00000029168) #33
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.b.c.a.b.a	ENSGT01000000216185.c	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Rhesus	MODERN SPECIES	16	RAD1 (ENSMMUG00000045918) #9	BRIX1 (ENSMMUG00000038794) #10	DNAJC21 (ENSMMUG00000000446) #11	ENSMMUG00000057066	AGXT2 (ENSMMUG00000006301) #12	PRLR (ENSMMUG00000006302) #13	SPEF2 (ENSMMUG00000018739) #14	IL7R (ENSMMUG00000001676)	CAPSL (ENSMMUG00000001678) #15	UGT3A1 (ENSMMUG00000055113)	LMBRD2 (ENSMMUG00000015223) #17	SKP2 (ENSMMUG00000015225) #18	NADK2 (ENSMMUG00000015226) #19	RANBP3L (ENSMMUG00000059966) #20	SLC1A3 (ENSMMUG00000006202) #21	NIPBL (ENSMMUG00000022154) #22	ENSMMUG00000030178	CPLANE1 (ENSMMUG00000022166) #23	ENSMMUG00000000703	ENSMMUG00000061988	ENSMMUG00000058026	NUP155 (ENSMMUG00000000704) #24	WDR70 (ENSMMUG00000006107) #25	ENSMMUG00000052836	ENSMMUG00000052974	GDNF (ENSMMUG00000018963) #26	EGFLAM (ENSMMUG00000017163) #27	LIFR (ENSMMUG00000007386) #28	ENSMMUG00000051389	OSMR (ENSMMUG00000001609) #29	RICTOR (ENSMMUG00000001611) #30
Crab-eating macaque	MODERN SPECIES	16	BRIX1 (ENSMFAG00000033107) #10	DNAJC21 (ENSMFAG00000001345) #11	AGXT2 (ENSMFAG00000001767) #12	PRLR (ENSMFAG00000039749) #13	ENSMFAG00000058323	SPEF2 (ENSMFAG00000036146) #14	IL7R (ENSMFAG00000040996)	CAPSL (ENSMFAG00000002782) #15	ENSMFAG00000034336	LMBRD2 (ENSMFAG00000003540) #17	ENSMFAG00000044438	SKP2 (ENSMFAG00000030476) #18	NADK2 (ENSMFAG00000039756) #19	RANBP3L (ENSMFAG00000014218) #20	SLC1A3 (ENSMFAG00000024693) #21	NIPBL (ENSMFAG00000041940) #22	ENSMFAG00000049453	ENSMFAG00000060328	CPLANE1 (ENSMFAG00000036182) #23	ENSMFAG00000056932	ENSMFAG00000061363	ENSMFAG00000061867	ENSMFAG00000052450	NUP155 (ENSMFAG00000040363) #24	WDR70 (ENSMFAG00000030910) #25	ENSMFAG00000057345	ENSMFAG00000061244	GDNF (ENSMFAG00000047234) #26	EGFLAM (ENSMFAG00000001590) #27	ENSMFAG00000034705	LIFR (ENSMFAG00000036647) #28
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Olive baboon	MODERN SPECIES	15	AMACR (ENSPANG00000008957)	RAI14 (ENSPANG00000012243) #7	TTC23L (ENSPANG00000010903) #8	RAD1 (ENSPANG00000024799) #9	BRIX1 (ENSPANG00000016504) #10	DNAJC21 (ENSPANG00000002427) #11	SPEF2 (ENSPANG00000013351) #14	IL7R (ENSPANG00000021405)	CAPSL (ENSPANG00000011302) #15	UGT3A1 (ENSPANG00000030682)	LMBRD2 (ENSPANG00000008846) #17	SKP2 (ENSPANG00000026073) #18	NADK2 (ENSPANG00000013350) #19	RANBP3L (ENSPANG00000009354) #20	SLC1A3 (ENSPANG00000014048) #21	NIPBL (ENSPANG00000004378) #22	CPLANE1 (ENSPANG00000022779) #23	ENSPANG00000042997	NUP155 (ENSPANG00000004003) #24	WDR70 (ENSPANG00000018958) #25	GDNF (ENSPANG00000010790) #26	EGFLAM (ENSPANG00000010086) #27	LIFR (ENSPANG00000017937) #28	ENSPANG00000040263	OSMR (ENSPANG00000003727) #29	ENSPANG00000003026	RICTOR (ENSPANG00000009353) #30	ENSPANG00000044550	FYB1 (ENSPANG00000019520) #31	C9 (ENSPANG00000006998) #32	DAB2 (ENSPANG00000005734) #33
Cercopithecinae_d	ANCESTRAL SPECIES	83	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00390000018651 #17	ENSGT00950000182965.a.b.b.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT01040000241472	ENSGT00800000124150 #23	ENSGT00940000165039	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00910000147779	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Drill	MODERN SPECIES	1414				SPEF2 (ENSMLEG00000037353) #14	IL7R (ENSMLEG00000034155)	CAPSL (ENSMLEG00000030886) #15	UGT3A1 (ENSMLEG00000034718)	UGT3A2 (ENSMLEG00000041808) #16	ENSMLEG00000019441	LMBRD2 (ENSMLEG00000043988) #17	ENSMLEG00000029047	SKP2 (ENSMLEG00000036215) #18	NADK2 (ENSMLEG00000030455) #19	RANBP3L (ENSMLEG00000024894) #20	SLC1A3 (ENSMLEG00000028629) #21	NIPBL (ENSMLEG00000041956) #22	ENSMLEG00000033949	ENSMLEG00000020591 #23	ENSMLEG00000029850 #23
Sooty mangabey	MODERN SPECIES	618	BRIX1 (ENSCATG00000037721) #10	DNAJC21 (ENSCATG00000029357) #11	AGXT2 (ENSCATG00000039875) #12	PRLR (ENSCATG00000044109) #13	SPEF2 (ENSCATG00000039845) #14	IL7R (ENSCATG00000035894)	CAPSL (ENSCATG00000036845) #15	UGT3A2 (ENSCATG00000044360) #16	ENSCATG00000018498	LMBRD2 (ENSCATG00000031788) #17	ENSCATG00000022161	SKP2 (ENSCATG00000034287) #18	NADK2 (ENSCATG00000030594) #19	RANBP3L (ENSCATG00000036983) #20	SLC1A3 (ENSCATG00000040527) #21	NIPBL (ENSCATG00000038296) #22	CPLANE1 (ENSCATG00000036842) #23	ENSCATG00000039550	ENSCATG00000039836	NUP155 (ENSCATG00000022656) #24	WDR70 (ENSCATG00000032326) #25	ENSCATG00000029476	GDNF (ENSCATG00000039360) #26	EGFLAM (ENSCATG00000031363) #27	ENSCATG00000019362	LIFR (ENSCATG00000037247) #28	ENSCATG00000040214	OSMR (ENSCATG00000040888) #29	ENSCATG00000037542	RICTOR (ENSCATG00000043229) #30	FYB1 (ENSCATG00000036267) #31
Vervet Monkey	MODERN SPECIES	23	RAD1 (ENSCSAG00000017124) #9	BRIX1 (ENSCSAG00000017117) #10	DNAJC21 (ENSCSAG00000017112) #11	AGXT2 (ENSCSAG00000017109) #12	PRLR (ENSCSAG00000017107) #13	SPEF2 (ENSCSAG00000017093) #14	IL7R (ENSCSAG00000017048)	CAPSL (ENSCSAG00000017045) #15	UGT3A1 (ENSCSAG00000017042)	UGT3A2 (ENSCSAG00000017039) #16	LMBRD2 (ENSCSAG00000017036) #17	SKP2 (ENSCSAG00000017028) #18	NADK2 (ENSCSAG00000017026) #19	RANBP3L (ENSCSAG00000017022) #20	SLC1A3 (ENSCSAG00000017016) #21	NIPBL (ENSCSAG00000017012) #22	CPLANE1 (ENSCSAG00000017005) #23	ENSCSAG00000018995	NUP155 (ENSCSAG00000016999) #24	WDR70 (ENSCSAG00000016994) #25	GDNF (ENSCSAG00000016991) #26	EGFLAM (ENSCSAG00000016988) #27	LIFR (ENSCSAG00000016984) #28	OSMR (ENSCSAG00000016980) #29	RICTOR (ENSCSAG00000016972) #30	ENSCSAG00000016963	ENSCSAG00000018996	FYB1 (ENSCSAG00000016953) #31	C9 (ENSCSAG00000016939) #32	DAB2 (ENSCSAG00000016933) #33	ENSCSAG00000018997
Rhinopithecus	ANCESTRAL SPECIES	678															ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00800000124150 #23	ENSGT00390000001798.d
Golden snub-nosed monkey	MODERN SPECIES	675															SLC1A3 (ENSRROG00000037610) #21	NIPBL (ENSRROG00000027875) #22	ENSRROG00000012772	CPLANE1 (ENSRROG00000044447) #23	ENSRROG00000039919
Black snub-nosed monkey	MODERN SPECIES	264															SLC1A3 (ENSRBIG00000041759) #21	NIPBL (ENSRBIG00000044409) #22	ENSRBIG00000042540	ENSRBIG00000037643	CPLANE1 (ENSRBIG00000028763) #23
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00940000154314.k.a.b	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33
Hominidae	ANCESTRAL SPECIES	7	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00800000124150 #23	ENSGT00390000001798.d	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT00390000016655.a.a.b.f
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00940000165039	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT00390000016655.a.a.b.f
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00940000165039	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT00390000016655.a.a.b.f
Pan	ANCESTRAL SPECIES	21	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000163740.c	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00390000005569.x.a.a.a.a.a.b.a.a	ENSGT00940000165039	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00620000089245	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT00390000016655.a.a.b.f
Bonobo	MODERN SPECIES	18	DNAJC21 (ENSPPAG00000042627) #11	AGXT2 (ENSPPAG00000035314) #12	PRLR (ENSPPAG00000043899) #13	ENSPPAG00000037233 #14	IL7R (ENSPPAG00000039723)	CAPSL (ENSPPAG00000019420) #15	ENSPPAG00000004829	ENSPPAG00000040298	ENSPPAG00000039004	ENSPPAG00000031288 #16	LMBRD2 (ENSPPAG00000029193) #17	SKP2 (ENSPPAG00000026467) #18	ENSPPAG00000036531 #19	RANBP3L (ENSPPAG00000031849) #20	SLC1A3 (ENSPPAG00000032856) #21	NIPBL (ENSPPAG00000038200) #22	ENSPPAG00000039740	ENSPPAG00000032480	CPLANE1 (ENSPPAG00000036782) #23	NUP155 (ENSPPAG00000043867) #24	ENSPPAG00000000687 #25	ENSPPAG00000030132	ENSPPAG00000036064 #25	GDNF (ENSPPAG00000012574) #26	EGFLAM (ENSPPAG00000034407) #27	LIFR (ENSPPAG00000040148) #28	OSMR (ENSPPAG00000033213) #29	RICTOR (ENSPPAG00000039635) #30	ENSPPAG00000024305	ENSPPAG00000039798 #31	C9 (ENSPPAG00000037150) #32
Chimpanzee	MODERN SPECIES	18	RAD1 (ENSPTRG00000016783) #9	BRIX1 (ENSPTRG00000016784) #10	DNAJC21 (ENSPTRG00000016785) #11	AGXT2 (ENSPTRG00000016786) #12	PRLR (ENSPTRG00000016787) #13	SPEF2 (ENSPTRG00000016788) #14	IL7R (ENSPTRG00000016790)	CAPSL (ENSPTRG00000016791) #15	UGT3A1 (ENSPTRG00000016792)	UGT3A2 (ENSPTRG00000051465) #16	LMBRD2 (ENSPTRG00000016794) #17	SKP2 (ENSPTRG00000016797) #18	NADK2 (ENSPTRG00000016798) #19	RANBP3L (ENSPTRG00000016799) #20	SLC1A3 (ENSPTRG00000016800) #21	NIPBL (ENSPTRG00000016801) #22	ENSPTRG00000045502	CPLANE1 (ENSPTRG00000023298) #23	NUP155 (ENSPTRG00000016804) #24	ENSPTRG00000049546	WDR70 (ENSPTRG00000016806) #25	GDNF (ENSPTRG00000016807) #26	EGFLAM (ENSPTRG00000016808) #27	LIFR (ENSPTRG00000016809) #28	OSMR (ENSPTRG00000016810) #29	RICTOR (ENSPTRG00000016811) #30	ENSPTRG00000042831	FYB1 (ENSPTRG00000045930) #31	C9 (ENSPTRG00000016816) #32	DAB2 (ENSPTRG00000016817) #33	ENSPTRG00000052510
Human	MODERN SPECIES	17	RAD1 (ENSG00000113456) #9	BRIX1 (ENSG00000113460) #10	DNAJC21 (ENSG00000168724) #11	AGXT2 (ENSG00000113492) #12	PRLR (ENSG00000113494) #13	SPEF2 (ENSG00000152582) #14	IL7R (ENSG00000168685)	CAPSL (ENSG00000152611) #15	UGT3A1 (ENSG00000145626)	UGT3A2 (ENSG00000168671) #16	LMBRD2 (ENSG00000164187) #17	SKP2 (ENSG00000145604) #18	NADK2 (ENSG00000152620) #19	RANBP3L (ENSG00000164188) #20	SLC1A3 (ENSG00000079215) #21	NIPBL (ENSG00000164190) #22	CPLANE1 (ENSG00000197603) #23	NUP155 (ENSG00000113569) #24	WDR70 (ENSG00000082068) #25	GDNF (ENSG00000168621) #26	EGFLAM (ENSG00000164318) #27	LIFR (ENSG00000113594) #28	OSMR (ENSG00000145623) #29	RICTOR (ENSG00000164327) #30	FYB1 (ENSG00000082074) #31	C9 (ENSG00000113600) #32	DAB2 (ENSG00000153071) #33	TTC33 (ENSG00000113638) #36	PTGER4 (ENSG00000171522) #35	PRKAA1 (ENSG00000132356) #37	RPL37 (ENSG00000145592)
Gorilla	MODERN SPECIES	8	RAD1 (ENSGGOG00000004219) #9	BRIX1 (ENSGGOG00000004225) #10	DNAJC21 (ENSGGOG00000024744) #11	AGXT2 (ENSGGOG00000006579) #12	PRLR (ENSGGOG00000043123) #13	ENSGGOG00000011332 #14	IL7R (ENSGGOG00000014862)	CAPSL (ENSGGOG00000022838) #15	UGT3A1 (ENSGGOG00000008662)	UGT3A2 (ENSGGOG00000003108) #16	LMBRD2 (ENSGGOG00000023658) #17	SKP2 (ENSGGOG00000015620) #18	NADK2 (ENSGGOG00000015623) #19	RANBP3L (ENSGGOG00000010607) #20	SLC1A3 (ENSGGOG00000004661) #21	NIPBL (ENSGGOG00000026268) #22	ENSGGOG00000038240	ENSGGOG00000041963	CPLANE1 (ENSGGOG00000015352) #23	NUP155 (ENSGGOG00000013905) #24	WDR70 (ENSGGOG00000034954) #25	GDNF (ENSGGOG00000039274) #26	EGFLAM (ENSGGOG00000005053) #27	LIFR (ENSGGOG00000015008) #28	OSMR (ENSGGOG00000014580) #29	RICTOR (ENSGGOG00000014599) #30	ENSGGOG00000025102	FYB1 (ENSGGOG00000001364) #31	C9 (ENSGGOG00000015918) #32	DAB2 (ENSGGOG00000005856) #33	ENSGGOG00000040103
Orangutan	MODERN SPECIES	18	BRIX1 (ENSPPYG00000015390) #10	ENSPPYG00000015391 #11	AGXT2 (ENSPPYG00000015392) #12	PRLR (ENSPPYG00000015393) #13	SPEF2 (ENSPPYG00000015395) #14	IL7R (ENSPPYG00000015396)	CAPSL (ENSPPYG00000015397) #15	UGT3A1 (ENSPPYG00000015398)	ENSPPYG00000034817	ENSPPYG00000038428	LMBRD2 (ENSPPYG00000015399) #17	SKP2 (ENSPPYG00000015400) #18	NADK2 (ENSPPYG00000015401) #19	RANBP3L (ENSPPYG00000036945) #20	SLC1A3 (ENSPPYG00000015403) #21	NIPBL (ENSPPYG00000015404) #22	CPLANE1 (ENSPPYG00000015405) #23	ENSPPYG00000015406	NUP155 (ENSPPYG00000015407) #24	WDR70 (ENSPPYG00000015408) #25	ENSPPYG00000034921	GDNF (ENSPPYG00000034776) #26	EGFLAM (ENSPPYG00000015410) #27	LIFR (ENSPPYG00000015411) #28	OSMR (ENSPPYG00000015413) #29	RICTOR (ENSPPYG00000015414) #30	ENSPPYG00000031776	FYB1 (ENSPPYG00000015415) #31	C9 (ENSPPYG00000015416) #32	DAB2 (ENSPPYG00000015417) #33	TTC33 (ENSPPYG00000015420) #36
Gibbon	MODERN SPECIES	21	TTC23L (ENSNLEG00000014433) #8	RAD1 (ENSNLEG00000014437) #9	BRIX1 (ENSNLEG00000032149) #10	DNAJC21 (ENSNLEG00000014463) #11	ENSNLEG00000014471 #12	PRLR (ENSNLEG00000032379) #13	ENSNLEG00000015937 #14	IL7R (ENSNLEG00000015949)	CAPSL (ENSNLEG00000015973) #15	UGT3A2 (ENSNLEG00000015982) #16	LMBRD2 (ENSNLEG00000015983) #17	SKP2 (ENSNLEG00000016025) #18	NADK2 (ENSNLEG00000016064) #19	RANBP3L (ENSNLEG00000016078) #20	SLC1A3 (ENSNLEG00000016107) #21	NIPBL (ENSNLEG00000016123) #22	ENSNLEG00000032397	CPLANE1 (ENSNLEG00000016160) #23	ENSNLEG00000016210	NUP155 (ENSNLEG00000016211) #24	ENSNLEG00000035003	WDR70 (ENSNLEG00000016270) #25	ENSNLEG00000032684	ENSNLEG00000016286 #26	EGFLAM (ENSNLEG00000016287) #27	LIFR (ENSNLEG00000028672) #28	OSMR (ENSNLEG00000016342) #29	RICTOR (ENSNLEG00000016355) #30	FYB1 (ENSNLEG00000032915) #31	C9 (ENSNLEG00000016425) #32	DAB2 (ENSNLEG00000016439) #33
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00390000007918.s.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.o #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Cebidae	ANCESTRAL SPECIES	6	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00390000007918.s.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.o #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Marmoset	MODERN SPECIES	11	AGXT2 (ENSCJAG00000018485) #12	PRLR (ENSCJAG00000018457) #13	ENSCJAG00000075083	SPEF2 (ENSCJAG00000018398) #14	IL7R (ENSCJAG00000018379)	CAPSL (ENSCJAG00000018371) #15	ENSCJAG00000065949	UGT3A1 (ENSCJAG00000018354)	LMBRD2 (ENSCJAG00000018328) #17	SKP2 (ENSCJAG00000018275) #18	NADK2 (ENSCJAG00000018248) #19	RANBP3L (ENSCJAG00000018235) #20	ENSCJAG00000069947	ENSCJAG00000082486	SLC1A3 (ENSCJAG00000018196) #21	NIPBL (ENSCJAG00000018052) #22	CPLANE1 (ENSCJAG00000018003) #23	ENSCJAG00000078551	ENSCJAG00000085546	NUP155 (ENSCJAG00000017976) #24	ENSCJAG00000070684	WDR70 (ENSCJAG00000007784) #25	GDNF (ENSCJAG00000007761) #26	EGFLAM (ENSCJAG00000007668) #27	LIFR (ENSCJAG00000007608) #28	ENSCJAG00000074673	ENSCJAG00000078983	OSMR (ENSCJAG00000007577) #29	RICTOR (ENSCJAG00000007501) #30	FYB1 (ENSCJAG00000007485) #31	C9 (ENSCJAG00000007477) #32
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.d	ENSGT00940000161263 #16	ENSGT00910000147583	ENSGT00940000163740.c	ENSGT00390000018651 #17	ENSGT00390000007918.s.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.o #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Bolivian squirrel monkey	MODERN SPECIES	57	PRLR (ENSSBOG00000025238) #13	ENSSBOG00000020338	ENSSBOG00000021503	SPEF2 (ENSSBOG00000028933) #14	IL7R (ENSSBOG00000031974)	CAPSL (ENSSBOG00000023443) #15	UGT3A1 (ENSSBOG00000028464)	UGT3A2 (ENSSBOG00000021569) #16	ENSSBOG00000011356	LMBRD2 (ENSSBOG00000027034) #17	ENSSBOG00000019827 #18	NADK2 (ENSSBOG00000025237) #19	RANBP3L (ENSSBOG00000027413) #20	ENSSBOG00000025695	SLC1A3 (ENSSBOG00000022569) #21	NIPBL (ENSSBOG00000021705) #22	CPLANE1 (ENSSBOG00000035658) #23	ENSSBOG00000034912	NUP155 (ENSSBOG00000019052) #24	ENSSBOG00000019791	ENSSBOG00000034407	WDR70 (ENSSBOG00000026848) #25	GDNF (ENSSBOG00000024539) #26	EGFLAM (ENSSBOG00000024254) #27	LIFR (ENSSBOG00000032569) #28	OSMR (ENSSBOG00000018501) #29	RICTOR (ENSSBOG00000033799) #30	FYB1 (ENSSBOG00000036067) #31	C9 (ENSSBOG00000027417) #32	DAB2 (ENSSBOG00000035362) #33	ENSSBOG00000032629
Capuchin	MODERN SPECIES	205	BRIX1 (ENSCCAG00000033405) #10	DNAJC21 (ENSCCAG00000038110) #11	AGXT2 (ENSCCAG00000022707) #12	PRLR (ENSCCAG00000029726) #13	ENSCCAG00000031804	SPEF2 (ENSCCAG00000031269) #14	IL7R (ENSCCAG00000031319)	CAPSL (ENSCCAG00000036140) #15	UGT3A1 (ENSCCAG00000026886)	ENSCCAG00000024654	LMBRD2 (ENSCCAG00000021003) #17	ENSCCAG00000029445 #18	NADK2 (ENSCCAG00000033594) #19	RANBP3L (ENSCCAG00000021294) #20	SLC1A3 (ENSCCAG00000036245) #21	NIPBL (ENSCCAG00000036588) #22	CPLANE1 (ENSCCAG00000035993) #23	NUP155 (ENSCCAG00000032379) #24	ENSCCAG00000032930	WDR70 (ENSCCAG00000036278) #25	GDNF (ENSCCAG00000020812) #26
Mas night monkey	MODERN SPECIES	576	DNAJC21 (ENSANAG00000029512) #11	AGXT2 (ENSANAG00000036773) #12	PRLR (ENSANAG00000037843) #13	SPEF2 (ENSANAG00000019062) #14	IL7R (ENSANAG00000035265)	CAPSL (ENSANAG00000024812) #15	UGT3A1 (ENSANAG00000031527)	ENSANAG00000027830	LMBRD2 (ENSANAG00000033559) #17	ENSANAG00000023606 #18	NADK2 (ENSANAG00000025565) #19	RANBP3L (ENSANAG00000031353) #20	ENSANAG00000030132	ENSANAG00000032983	SLC1A3 (ENSANAG00000022305) #21	NIPBL (ENSANAG00000023189) #22	ENSANAG00000017913	CPLANE1 (ENSANAG00000026997) #23	ENSANAG00000024251	NUP155 (ENSANAG00000022258) #24	ENSANAG00000024058	WDR70 (ENSANAG00000027079) #25	GDNF (ENSANAG00000027668) #26	EGFLAM (ENSANAG00000036951) #27	LIFR (ENSANAG00000007846) #28	OSMR (ENSANAG00000036639) #29	RICTOR (ENSANAG00000035097) #30	FYB1 (ENSANAG00000020505) #31	C9 (ENSANAG00000036485) #32	DAB2 (ENSANAG00000038111) #33	ENSANAG00000022538
Tarsier	MODERN SPECIES	3855																NIPBL (ENSTSYG00000013472) #22	CPLANE1 (ENSTSYG00000001585) #23
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Glires	ANCESTRAL SPECIES	7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Rodentia	ANCESTRAL SPECIES	7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Marmotini	ANCESTRAL SPECIES	71	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Marmotini_b	ANCESTRAL SPECIES	102	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Squirrel	MODERN SPECIES	118	AMACR (ENSSTOG00000015060)	C1QTNF3 (ENSSTOG00000019700)	RAI14 (ENSSTOG00000023891) #7	RAD1 (ENSSTOG00000009593) #9	BRIX1 (ENSSTOG00000009600) #10	DNAJC21 (ENSSTOG00000009616) #11	AGXT2 (ENSSTOG00000008427) #12	PRLR (ENSSTOG00000008443) #13	SPEF2 (ENSSTOG00000011158) #14	CAPSL (ENSSTOG00000011632) #15	LMBRD2 (ENSSTOG00000002718) #17	SKP2 (ENSSTOG00000002739) #18	NADK2 (ENSSTOG00000002754) #19	RANBP3L (ENSSTOG00000002767) #20	SLC1A3 (ENSSTOG00000015072) #21	NIPBL (ENSSTOG00000014981) #22	CPLANE1 (ENSSTOG00000015341) #23	NUP155 (ENSSTOG00000015151) #24	WDR70 (ENSSTOG00000005031) #25	GDNF (ENSSTOG00000028754) #26	ENSSTOG00000032013	EGFLAM (ENSSTOG00000012561) #27	LIFR (ENSSTOG00000012582) #28	OSMR (ENSSTOG00000005685) #29	RICTOR (ENSSTOG00000005716) #30	ENSSTOG00000028890	C9 (ENSSTOG00000002454) #32	DAB2 (ENSSTOG00000002461) #33	ENSSTOG00000028948	PTGER4 (ENSSTOG00000024710) #35	TTC33 (ENSSTOG00000025089) #36
Arctic ground squirrel	MODERN SPECIES	253										CAPSL (ENSUPAG00010014761) #15	LMBRD2 (ENSUPAG00010014686) #17	SKP2 (ENSUPAG00010014629) #18	NADK2 (ENSUPAG00010014557) #19	RANBP3L (ENSUPAG00010014545) #20	SLC1A3 (ENSUPAG00010014513) #21	NIPBL (ENSUPAG00010014346) #22	CPLANE1 (ENSUPAG00010014108) #23	NUP155 (ENSUPAG00010014037) #24	WDR70 (ENSUPAG00010013979) #25	GDNF (ENSUPAG00010013969) #26	EGFLAM (ENSUPAG00010013916) #27	LIFR (ENSUPAG00010013890) #28	OSMR (ENSUPAG00010013876) #29	RICTOR (ENSUPAG00010013763) #30	FYB1 (ENSUPAG00010013738) #31	ENSUPAG00010013729
Alpin marmot	MODERN SPECIES	44	TTC23L (ENSMMMG00000003108) #8	RAD1 (ENSMMMG00000003078) #9	BRIX1 (ENSMMMG00000003063) #10	DNAJC21 (ENSMMMG00000003040) #11	AGXT2 (ENSMMMG00000002975) #12	PRLR (ENSMMMG00000002932) #13	ENSMMMG00000002868 #14	ENSMMMG00000002836	ENSMMMG00000002727	CAPSL (ENSMMMG00000002701) #15	LMBRD2 (ENSMMMG00000002638) #17	SKP2 (ENSMMMG00000002584) #18	NADK2 (ENSMMMG00000002432) #19	RANBP3L (ENSMMMG00000002394) #20	SLC1A3 (ENSMMMG00000002366) #21	NIPBL (ENSMMMG00000002298) #22	CPLANE1 (ENSMMMG00000002202) #23	NUP155 (ENSMMMG00000002057) #24	WDR70 (ENSMMMG00000002008) #25	GDNF (ENSMMMG00000001995) #26	EGFLAM (ENSMMMG00000001898) #27	LIFR (ENSMMMG00000001748) #28	OSMR (ENSMMMG00000001500) #29	RICTOR (ENSMMMG00000001395) #30	FYB1 (ENSMMMG00000001335) #31	C9 (ENSMMMG00000001324) #32	DAB2 (ENSMMMG00000001159) #33
Eurasian red squirrel	MODERN SPECIES	15	TTC23L (ENSSVLG00005008797) #8	RAD1 (ENSSVLG00005008756) #9	BRIX1 (ENSSVLG00005008728) #10	DNAJC21 (ENSSVLG00005008691) #11	ENSSVLG00005008670	AGXT2 (ENSSVLG00005008530) #12	PRLR (ENSSVLG00005008333) #13	SPEF2 (ENSSVLG00005007810) #14	IL7R (ENSSVLG00005007570)	CAPSL (ENSSVLG00005007506) #15	LMBRD2 (ENSSVLG00005007437) #17	SKP2 (ENSSVLG00005007355) #18	NADK2 (ENSSVLG00005007272) #19	RANBP3L (ENSSVLG00005007099) #20	SLC1A3 (ENSSVLG00005006904) #21	NIPBL (ENSSVLG00005006788) #22	ENSSVLG00005006738	ENSSVLG00005006709	CPLANE1 (ENSSVLG00005006661) #23	NUP155 (ENSSVLG00005006573) #24	ENSSVLG00005006521	WDR70 (ENSSVLG00005006404) #25	GDNF (ENSSVLG00005006351) #26	EGFLAM (ENSSVLG00005006208) #27	LIFR (ENSSVLG00005006057) #28	ENSSVLG00005006034 #29	ENSSVLG00005006015 #29	RICTOR (ENSSVLG00005005561) #30	FYB1 (ENSSVLG00005005277) #31	ENSSVLG00005005217	C9 (ENSSVLG00005005172) #32
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000155567.de #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a	ENSGT00940000162106
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000155567.de #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a	ENSGT00940000162106
Long-tailed chinchilla	MODERN SPECIES	133	RAI14 (ENSCLAG00000010437) #7	TTC23L (ENSCLAG00000006825) #8	RAD1 (ENSCLAG00000007717) #9	BRIX1 (ENSCLAG00000008124) #10	DNAJC21 (ENSCLAG00000011176) #11	AGXT2 (ENSCLAG00000007004) #12	PRLR (ENSCLAG00000008700) #13	SPEF2 (ENSCLAG00000009013) #14	IL7R (ENSCLAG00000015625)	CAPSL (ENSCLAG00000009017) #15	LMBRD2 (ENSCLAG00000011208) #17	SKP2 (ENSCLAG00000014622) #18	NADK2 (ENSCLAG00000007509) #19	RANBP3L (ENSCLAG00000011000) #20	SLC1A3 (ENSCLAG00000011675) #21	NIPBL (ENSCLAG00000009826) #22	CPLANE1 (ENSCLAG00000010572) #23	NUP155 (ENSCLAG00000010580) #24	WDR70 (ENSCLAG00000012915) #25	GDNF (ENSCLAG00000013976) #26	EGFLAM (ENSCLAG00000011146) #27	LIFR (ENSCLAG00000008192) #28	OSMR (ENSCLAG00000008932) #29	RICTOR (ENSCLAG00000007847) #30	FYB1 (ENSCLAG00000012441) #31	ENSCLAG00000015330 #33	ENSCLAG00000007996	PTGER4 (ENSCLAG00000014156) #35	TTC33 (ENSCLAG00000009002) #36	PRKAA1 (ENSCLAG00000009683) #37	RPL37 (ENSCLAG00000008803)
Degu	MODERN SPECIES	43					ENSODEG00000017833 #14	IL7R (ENSODEG00000017590)	CAPSL (ENSODEG00000017724) #15	UGT3A2 (ENSODEG00000017596) #16	ENSODEG00000017331	LMBRD2 (ENSODEG00000017584) #17	SKP2 (ENSODEG00000017346) #18	ENSODEG00000017341	ENSODEG00000017427 #20	ENSODEG00000017391	SLC1A3 (ENSODEG00000017216) #21	NIPBL (ENSODEG00000017351) #22	CPLANE1 (ENSODEG00000017720) #23	NUP155 (ENSODEG00000017480) #24	ENSODEG00000017505	WDR70 (ENSODEG00000017279) #25	GDNF (ENSODEG00000017491) #26	ENSODEG00000020500	EGFLAM (ENSODEG00000017406) #27	LIFR (ENSODEG00000017477) #28	OSMR (ENSODEG00000017295) #29	RICTOR (ENSODEG00000017133) #30	FYB1 (ENSODEG00000017404) #31	ENSODEG00000017298 #33	ENSODEG00000017255	TMCO5A (ENSODEG00000017946)	ENSODEG00000017175
Guinea pig	MODERN SPECIES	29	RAI14 (ENSCPOG00000009276) #7	TTC23L (ENSCPOG00000021477) #8	RAD1 (ENSCPOG00000039837) #9	BRIX1 (ENSCPOG00000022064) #10	ENSCPOG00000006471	AGXT2 (ENSCPOG00000008765) #12	PRLR (ENSCPOG00000035076) #13	ENSCPOG00000009468 #14	IL7R (ENSCPOG00000040614)	CAPSL (ENSCPOG00000007724) #15	LMBRD2 (ENSCPOG00000038006) #17	ENSCPOG00000013303 #18	NADK2 (ENSCPOG00000013309) #19	RANBP3L (ENSCPOG00000014458) #20	SLC1A3 (ENSCPOG00000007462) #21	NIPBL (ENSCPOG00000008170) #22	ENSCPOG00000021336 #23	NUP155 (ENSCPOG00000008800) #24	WDR70 (ENSCPOG00000015400) #25	GDNF (ENSCPOG00000034063) #26	EGFLAM (ENSCPOG00000002020) #27	LIFR (ENSCPOG00000000803) #28	OSMR (ENSCPOG00000015086) #29	RICTOR (ENSCPOG00000039121) #30	FYB1 (ENSCPOG00000003694) #31	ENSCPOG00000008684 #33	PTGER4 (ENSCPOG00000000716) #35	TTC33 (ENSCPOG00000039296) #36	PRKAA1 (ENSCPOG00000005446) #37	RPL37 (ENSCPOG00000040164)	C7 (ENSCPOG00000015671)
Naked mole-rat female	MODERN SPECIES	7	AGXT2 (ENSHGLG00000003288) #12	PRLR (ENSHGLG00000009051) #13	ENSHGLG00000007072	SPEF2 (ENSHGLG00000029358) #14	IL7R (ENSHGLG00000047499)	ENSHGLG00000004787	CAPSL (ENSHGLG00000004701) #15	LMBRD2 (ENSHGLG00000003754) #17	SKP2 (ENSHGLG00000003646) #18	NADK2 (ENSHGLG00000002659) #19	RANBP3L (ENSHGLG00000012032) #20	ENSHGLG00000047940	ENSHGLG00000039421	ENSHGLG00000048659	SLC1A3 (ENSHGLG00000011585) #21	NIPBL (ENSHGLG00000010862) #22	CPLANE1 (ENSHGLG00000008523) #23	ENSHGLG00000007110	NUP155 (ENSHGLG00000011918) #24	ENSHGLG00000042227	WDR70 (ENSHGLG00000007995) #25	ENSHGLG00000045283 #26	EGFLAM (ENSHGLG00000003265) #27	LIFR (ENSHGLG00000002688) #28	OSMR (ENSHGLG00000002225) #29	ENSHGLG00000038546	RICTOR (ENSHGLG00000004986) #30	ENSHGLG00000049355	ENSHGLG00000003910 #31	C9 (ENSHGLG00000003707) #32	DAB2 (ENSHGLG00000003257) #33
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Muroidea	ANCESTRAL SPECIES	4	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Cricetidae_B	ANCESTRAL SPECIES	37	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Northern American deer mouse	MODERN SPECIES	6	Capsl (ENSPEMG00000011650) #15	ENSPEMG00000024009 #16	ENSPEMG00000028702 #16	ENSPEMG00000015486	ENSPEMG00000013389	ENSPEMG00000029840	Cdh9 (ENSPEMG00000022860)	ENSPEMG00000023652	ENSPEMG00000013123 #16	ENSPEMG00000029009 #16	Lmbrd2 (ENSPEMG00000007175) #17	Skp2 (ENSPEMG00000019228) #18	Nadk2 (ENSPEMG00000011766) #19	Ranbp3l (ENSPEMG00000002400) #20	Slc1a3 (ENSPEMG00000000375) #21	Nipbl (ENSPEMG00000020126) #22	Cplane1 (ENSPEMG00000019802) #23	Nup155 (ENSPEMG00000019707) #24	Wdr70 (ENSPEMG00000008794) #25	Gdnf (ENSPEMG00000027275) #26	Egflam (ENSPEMG00000017044) #27	Lifr (ENSPEMG00000004406) #28	ENSPEMG00000030395	Osmr (ENSPEMG00000008906) #29	Rictor (ENSPEMG00000000667) #30	ENSPEMG00000014848	Fyb (ENSPEMG00000001686) #31	C9 (ENSPEMG00000008329) #32	Dab2 (ENSPEMG00000013156) #33	ENSPEMG00000030159	Ptger4 (ENSPEMG00000028671) #35
Prairie vole	MODERN SPECIES	6	Rad1 (ENSMOCG00000021129) #9	Brix1 (ENSMOCG00000018798) #10	Dnajc21 (ENSMOCG00000011153) #11	Agxt2 (ENSMOCG00000012490) #12	Prlr (ENSMOCG00000021296) #13	Spef2 (ENSMOCG00000000309) #14	Il7r (ENSMOCG00000000984)	Capsl (ENSMOCG00000012675) #15	ENSMOCG00000007394 #16	ENSMOCG00000022525 #16	Lmbrd2 (ENSMOCG00000014813) #17	Skp2 (ENSMOCG00000008331) #18	Nadk2 (ENSMOCG00000019506) #19	Ranbp3l (ENSMOCG00000018661) #20	Slc1a3 (ENSMOCG00000000262) #21	Nipbl (ENSMOCG00000000456) #22	ENSMOCG00000018878	Cplane1 (ENSMOCG00000004713) #23	Nup155 (ENSMOCG00000014018) #24	Wdr70 (ENSMOCG00000000693) #25	Gdnf (ENSMOCG00000016819) #26	Egflam (ENSMOCG00000016024) #27	Lifr (ENSMOCG00000021812) #28	Osmr (ENSMOCG00000017794) #29	Rictor (ENSMOCG00000018257) #30	Fyb (ENSMOCG00000000549) #31	C9 (ENSMOCG00000018405) #32	ENSMOCG00000022736 #33	ENSMOCG00000000823	Ptger4 (ENSMOCG00000017627) #35	Ttc33 (ENSMOCG00000016527) #36
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Ttc23l (ENSCGRG00001024333) #8	Rad1 (ENSCGRG00001011029) #9	Brix1 (ENSCGRG00001007932) #10	Dnajc21 (ENSCGRG00001020440) #11	Agxt2 (ENSCGRG00001020038) #12	Prlr (ENSCGRG00001006147) #13	Spef2 (ENSCGRG00001023075) #14	Il7r (ENSCGRG00001016104)	Capsl (ENSCGRG00001008670) #15	Lmbrd2 (ENSCGRG00001023603) #17	Skp2 (ENSCGRG00001022106) #18	Nadk2 (ENSCGRG00001022039) #19	Ranbp3l (ENSCGRG00001024211) #20	Slc1a3 (ENSCGRG00001011815) #21	ENSCGRG00001008847	Nipbl (ENSCGRG00001024039) #22	Cplane1 (ENSCGRG00001023647) #23	Nup155 (ENSCGRG00001023185) #24	Wdr70 (ENSCGRG00001024618) #25	Gdnf (ENSCGRG00001024149) #26	ENSCGRG00001024626	ENSCGRG00001024378	Egflam (ENSCGRG00001023724) #27	Lifr (ENSCGRG00001003293) #28	Osmr (ENSCGRG00001017859) #29	Rictor (ENSCGRG00001009015) #30	Fyb (ENSCGRG00001022410) #31	C9 (ENSCGRG00001021695) #32	Dab2 (ENSCGRG00001021141) #33	ENSCGRG00001012741	ENSCGRG00001008646
Golden Hamster	MODERN SPECIES	695	C1qtnf3 (ENSMAUG00000018568)	Rai14 (ENSMAUG00000013114) #7	Ttc23l (ENSMAUG00000015262) #8	Rad1 (ENSMAUG00000020278) #9	Dnajc21 (ENSMAUG00000009009) #11	Agxt2 (ENSMAUG00000015037) #12	Prlr (ENSMAUG00000016749) #13	Spef2 (ENSMAUG00000013955) #14	Il7r (ENSMAUG00000016037)	Capsl (ENSMAUG00000020720) #15	Lmbrd2 (ENSMAUG00000014866) #17	Skp2 (ENSMAUG00000001989) #18	Nadk2 (ENSMAUG00000022071) #19	ENSMAUG00000022209 #20	Slc1a3 (ENSMAUG00000009752) #21	Nipbl (ENSMAUG00000017640) #22	Cplane1 (ENSMAUG00000001083) #23	Nup155 (ENSMAUG00000003381) #24	Wdr70 (ENSMAUG00000007958) #25	Gdnf (ENSMAUG00000019401) #26	Egflam (ENSMAUG00000015382) #27	Lifr (ENSMAUG00000015733) #28	Osmr (ENSMAUG00000019728) #29	Rictor (ENSMAUG00000013015) #30	Fyb (ENSMAUG00000001181) #31	C9 (ENSMAUG00000018301) #32	ENSMAUG00000015397 #33	Ptger4 (ENSMAUG00000014264) #35	Ptchd1 (ENSMAUG00000002646)	Prdx4 (ENSMAUG00000021607)	ENSMAUG00000008759
Murinae	ANCESTRAL SPECIES	24	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Mus	ANCESTRAL SPECIES	22	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B.e #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Mus_A	ANCESTRAL SPECIES	13	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B.e #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.m.a #16	ENSGT00940000161263.m.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Mus_B	ANCESTRAL SPECIES	12	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B.e #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.m.a.b #16	ENSGT00940000161263.m.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.g #37	ENSGT00940000158865.h #37
Mouse	MODERN SPECIES	6	Rad1 (ENSMUSG00000022248) #9	Brix1 (ENSMUSG00000022247) #10	Dnajc21 (ENSMUSG00000044224) #11	Agxt2 (ENSMUSG00000089678) #12	Prlr (ENSMUSG00000005268) #13	Spef2 (ENSMUSG00000072663) #14	Il7r (ENSMUSG00000003882)	Capsl (ENSMUSG00000039676) #15	Ugt3a2 (ENSMUSG00000049152) #16	Ugt3a1 (ENSMUSG00000072664) #16	Lmbrd2 (ENSMUSG00000039704) #17	Skp2 (ENSMUSG00000054115) #18	Nadk2 (ENSMUSG00000022253) #19	Ranbp3l (ENSMUSG00000048424) #20	Slc1a3 (ENSMUSG00000005360) #21	Nipbl (ENSMUSG00000022141) #22	Cplane1 (ENSMUSG00000039801) #23	Nup155 (ENSMUSG00000022142) #24	Wdr70 (ENSMUSG00000039828) #25	Gdnf (ENSMUSG00000022144) #26	Egflam (ENSMUSG00000042961) #27	Lifr (ENSMUSG00000054263) #28	Osmr (ENSMUSG00000022146) #29	Rictor (ENSMUSG00000050310) #30	Fyb (ENSMUSG00000022148) #31	C9 (ENSMUSG00000022149) #32	Dab2 (ENSMUSG00000022150) #33	Ptger4 (ENSMUSG00000039942) #35	Ttc33 (ENSMUSG00000022151) #36	Prkaa1 (ENSMUSG00000050697) #37	Rpl37 (ENSMUSG00000041841)
Mus_C	ANCESTRAL SPECIES	28	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B.e #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.m.a.b #16	ENSGT00940000161263.m.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.g #37	ENSGT00940000158865.h #37
spretus	MODERN SPECIES	6	Brix1 (MGP_SPRETEiJ_G0020562) #10	Dnajc21 (MGP_SPRETEiJ_G0020561) #11	Agxt2 (MGP_SPRETEiJ_G0020560) #12	MGP_SPRETEiJ_G0020559 #13	Prlr (MGP_SPRETEiJ_G0020558) #13	MGP_SPRETEiJ_G0020557 #14	Il7r (MGP_SPRETEiJ_G0020556)	Capsl (MGP_SPRETEiJ_G0020555) #15	MGP_SPRETEiJ_G0020554 #16	Ugt3a1 (MGP_SPRETEiJ_G0020553) #16	Lmbrd2 (MGP_SPRETEiJ_G0020552) #17	Skp2 (MGP_SPRETEiJ_G0020551) #18	Nadk2 (MGP_SPRETEiJ_G0020550) #19	Ranbp3l (MGP_SPRETEiJ_G0020549) #20	Slc1a3 (MGP_SPRETEiJ_G0020548) #21	Nipbl (MGP_SPRETEiJ_G0020547) #22	Cplane1 (MGP_SPRETEiJ_G0020546) #23	Nup155 (MGP_SPRETEiJ_G0020545) #24	Wdr70 (MGP_SPRETEiJ_G0020544) #25	Gdnf (MGP_SPRETEiJ_G0020543) #26	Egflam (MGP_SPRETEiJ_G0020542) #27	Lifr (MGP_SPRETEiJ_G0020541) #28	Osmr (MGP_SPRETEiJ_G0020540) #29	Rictor (MGP_SPRETEiJ_G0020539) #30	Fyb (MGP_SPRETEiJ_G0020538) #31	C9 (MGP_SPRETEiJ_G0020537) #32	Dab2 (MGP_SPRETEiJ_G0020536) #33	Ptger4 (MGP_SPRETEiJ_G0020535) #35	Ttc33 (MGP_SPRETEiJ_G0020534) #36	MGP_SPRETEiJ_G0020533 #37	Rpl37 (MGP_SPRETEiJ_G0020532)
Steppe mouse	MODERN SPECIES	3011			Il7r (ENSMSIG00000030891)	Capsl (ENSMSIG00000030897) #15	ENSMSIG00000030898 #16	Ugt3a2 (ENSMSIG00000030899) #16	ENSMSIG00000030908 #16	ENSMSIG00000030913	ENSMSIG00000030917 #16	Lmbrd2 (ENSMSIG00000030920) #17	Skp2 (ENSMSIG00000030934) #18	Nadk2 (ENSMSIG00000030950) #19	Ranbp3l (ENSMSIG00000030958) #20	Slc1a3 (ENSMSIG00000030979) #21	ENSMSIG00000030989	Nipbl (ENSMSIG00000030991) #22	Cplane1 (ENSMSIG00000031010) #23	Nup155 (ENSMSIG00000031024) #24
Ryukyu mouse	MODERN SPECIES	6	Brix1 (MGP_CAROLIEiJ_G0019665) #10	MGP_CAROLIEiJ_G0019664 #11	Agxt2 (MGP_CAROLIEiJ_G0019663) #12	MGP_CAROLIEiJ_G0019662 #13	Prlr (MGP_CAROLIEiJ_G0019661) #13	MGP_CAROLIEiJ_G0019660 #14	Il7r (MGP_CAROLIEiJ_G0019659)	Capsl (MGP_CAROLIEiJ_G0019658) #15	MGP_CAROLIEiJ_G0019657 #16	MGP_CAROLIEiJ_G0019656 #16	Lmbrd2 (MGP_CAROLIEiJ_G0019655) #17	Skp2 (MGP_CAROLIEiJ_G0019654) #18	Nadk2 (MGP_CAROLIEiJ_G0019653) #19	MGP_CAROLIEiJ_G0019652 #20	Slc1a3 (MGP_CAROLIEiJ_G0019651) #21	Nipbl (MGP_CAROLIEiJ_G0019650) #22	Cplane1 (MGP_CAROLIEiJ_G0019649) #23	Nup155 (MGP_CAROLIEiJ_G0019648) #24	Wdr70 (MGP_CAROLIEiJ_G0019647) #25	Gdnf (MGP_CAROLIEiJ_G0019646) #26	Egflam (MGP_CAROLIEiJ_G0019645) #27	Lifr (MGP_CAROLIEiJ_G0019644) #28	Osmr (MGP_CAROLIEiJ_G0019643) #29	Rictor (MGP_CAROLIEiJ_G0019642) #30	Fyb (MGP_CAROLIEiJ_G0019641) #31	C9 (MGP_CAROLIEiJ_G0019640) #32	Dab2 (MGP_CAROLIEiJ_G0019639) #33	Ptger4 (MGP_CAROLIEiJ_G0019638) #35	MGP_CAROLIEiJ_G0019637 #36	Prkaa1 (MGP_CAROLIEiJ_G0019636) #37	Rpl37 (MGP_CAROLIEiJ_G0019635)
Shrew mouse	MODERN SPECIES	2	Rad1 (MGP_PahariEiJ_G0016046) #9	MGP_PahariEiJ_G0016045 #10	Dnajc21 (MGP_PahariEiJ_G0016044) #11	Agxt2 (MGP_PahariEiJ_G0016043) #12	MGP_PahariEiJ_G0016042 #13	Prlr (MGP_PahariEiJ_G0016041) #13	MGP_PahariEiJ_G0016040 #14	Il7r (MGP_PahariEiJ_G0016039)	Capsl (MGP_PahariEiJ_G0016038) #15	MGP_PahariEiJ_G0016037	Lmbrd2 (MGP_PahariEiJ_G0016036) #17	Skp2 (MGP_PahariEiJ_G0016035) #18	Nadk2 (MGP_PahariEiJ_G0016034) #19	MGP_PahariEiJ_G0016033 #20	Slc1a3 (MGP_PahariEiJ_G0016032) #21	Nipbl (MGP_PahariEiJ_G0016031) #22	Cplane1 (MGP_PahariEiJ_G0016030) #23	Nup155 (MGP_PahariEiJ_G0016029) #24	Wdr70 (MGP_PahariEiJ_G0016028) #25	Gdnf (MGP_PahariEiJ_G0016027) #26	Egflam (MGP_PahariEiJ_G0016026) #27	Lifr (MGP_PahariEiJ_G0016025) #28	Osmr (MGP_PahariEiJ_G0016024) #29	Rictor (MGP_PahariEiJ_G0016023) #30	Fyb (MGP_PahariEiJ_G0016022) #31	C9 (MGP_PahariEiJ_G0016021) #32	Dab2 (MGP_PahariEiJ_G0016020) #33	Ptger4 (MGP_PahariEiJ_G0016019) #35	Ttc33 (MGP_PahariEiJ_G0016018) #36	Prkaa1 (MGP_PahariEiJ_G0016017) #37	Rpl37 (MGP_PahariEiJ_G0016016)
Rat	MODERN SPECIES	11	Dnajc21 (ENSRNOG00000017876) #11	Agxt2 (ENSRNOG00000017821) #12	Prlr (ENSRNOG00000057557) #13	ENSRNOG00000065396	Spef2 (ENSRNOG00000058275) #14	Il7r (ENSRNOG00000065741)	Capsl (ENSRNOG00000054277) #15	Ugt3a2 (ENSRNOG00000059568) #16	Lmbrd2 (ENSRNOG00000054751) #17	Skp2 (ENSRNOG00000059059) #18	Nadk2 (ENSRNOG00000054157) #19	ENSRNOG00000068920	Ranbp3l (ENSRNOG00000052173) #20	Slc1a3 (ENSRNOG00000016163) #21	AABR07008421.1 (ENSRNOG00000030748)	Nipbl (ENSRNOG00000056907) #22	Cplane1 (ENSRNOG00000042118) #23	Nup155 (ENSRNOG00000013411) #24	Wdr70 (ENSRNOG00000013336) #25	Gdnf (ENSRNOG00000012819) #26	Egflam (ENSRNOG00000012058) #27	Lifr (ENSRNOG00000011696) #28	Osmr (ENSRNOG00000033192) #29	Rictor (ENSRNOG00000011341) #30	Fyb1 (ENSRNOG00000013886) #31	C9 (ENSRNOG00000013736) #32	Dab2 (ENSRNOG00000028930) #33	ENSRNOG00000063101	Rps15al4 (ENSRNOG00000052207)	Ptger4 (ENSRNOG00000013240) #35	Ttc33 (ENSRNOG00000013217) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1183							ENSNGAG00000018242 #14	Il7r (ENSNGAG00000000177)	Capsl (ENSNGAG00000002404) #15	ENSNGAG00000017914 #16	Lmbrd2 (ENSNGAG00000000092) #17	Skp2 (ENSNGAG00000002105) #18	Nadk2 (ENSNGAG00000012720) #19	ENSNGAG00000016646 #20	Slc1a3 (ENSNGAG00000018048) #21	Nipbl (ENSNGAG00000018174) #22	Cplane1 (ENSNGAG00000014748) #23	Nup155 (ENSNGAG00000001345) #24	Wdr70 (ENSNGAG00000013618) #25	Gdnf (ENSNGAG00000017460) #26	Egflam (ENSNGAG00000019890) #27	Lifr (ENSNGAG00000006273) #28	ENSNGAG00000009080	Osmr (ENSNGAG00000016413) #29	Rictor (ENSNGAG00000000546) #30	Fyb (ENSNGAG00000008827) #31	C9 (ENSNGAG00000013631) #32	ENSNGAG00000018186 #33	ENSNGAG00000017678	Ptger4 (ENSNGAG00000002797) #35	Ttc33 (ENSNGAG00000005682) #36
Lesser Egyptian jerboa	MODERN SPECIES	48	Dnajc21 (ENSJJAG00000019642) #11	Agxt2 (ENSJJAG00000017162) #12	Prlr (ENSJJAG00000004948) #13	ENSJJAG00000014652	ENSJJAG00000009870 #14	Il7r (ENSJJAG00000015821)	Capsl (ENSJJAG00000024164) #15	ENSJJAG00000023154 #16	ENSJJAG00000002933 #16	Lmbrd2 (ENSJJAG00000011271) #17	Skp2 (ENSJJAG00000014879) #18	Nadk2 (ENSJJAG00000023107) #19	ENSJJAG00000007978 #20	ENSJJAG00000012664	Slc1a3 (ENSJJAG00000011327) #21	Nipbl (ENSJJAG00000022683) #22	Cplane1 (ENSJJAG00000021533) #23	Nup155 (ENSJJAG00000020587) #24	Wdr70 (ENSJJAG00000000410) #25	Gdnf (ENSJJAG00000024134) #26	Egflam (ENSJJAG00000017564) #27	Lifr (ENSJJAG00000018296) #28	Osmr (ENSJJAG00000011588) #29	Rictor (ENSJJAG00000014049) #30	Fyb (ENSJJAG00000016416) #31	ENSJJAG00000000928 #32	ENSJJAG00000018434 #33	ENSJJAG00000011581	Ptger4 (ENSJJAG00000023417) #35	ENSJJAG00000007891 #36	Prkaa1 (ENSJJAG00000021671) #37
Kangaroo rat	MODERN SPECIES	360	Rai14 (ENSDORG00000009364) #7	Ttc23l (ENSDORG00000009367) #8	Rad1 (ENSDORG00000009368) #9	Brix1 (ENSDORG00000009369) #10	Dnajc21 (ENSDORG00000009370) #11	Agxt2 (ENSDORG00000009372) #12	Prlr (ENSDORG00000003846) #13	ENSDORG00000009555 #14	Il7r (ENSDORG00000030122)	Capsl (ENSDORG00000009565) #15	Lmbrd2 (ENSDORG00000013092) #17	Skp2 (ENSDORG00000013094) #18	Nadk2 (ENSDORG00000013100) #19	ENSDORG00000029340 #20	Slc1a3 (ENSDORG00000016590) #21	Nipbl (ENSDORG00000002543) #22	Nup155 (ENSDORG00000009542) #24	Wdr70 (ENSDORG00000008417) #25	Gdnf (ENSDORG00000027984) #26	Egflam (ENSDORG00000016165) #27	Lifr (ENSDORG00000016168) #28	Osmr (ENSDORG00000010368) #29	Rictor (ENSDORG00000010369) #30	Fyb (ENSDORG00000015775) #31	ENSDORG00000006875 #33	Ptger4 (ENSDORG00000005762) #35	Ttc33 (ENSDORG00000014182) #36	Prkaa1 (ENSDORG00000014183) #37	ENSDORG00000008300	ENSDORG00000008302	C7 (ENSDORG00000008303)
Lagomorpha	ANCESTRAL SPECIES	28	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Rabbit	MODERN SPECIES	2	RAD1 (ENSOCUG00000014474) #9	BRIX1 (ENSOCUG00000014478) #10	DNAJC21 (ENSOCUG00000005257) #11	AGXT2 (ENSOCUG00000005264) #12	PRLR (ENSOCUG00000005274) #13	SPEF2 (ENSOCUG00000006774) #14	IL7R (ENSOCUG00000011402)	CAPSL (ENSOCUG00000011410) #15	UGT3A2 (ENSOCUG00000011414) #16	LMBRD2 (ENSOCUG00000011423) #17	ENSOCUG00000009154 #18	NADK2 (ENSOCUG00000009162) #19	RANBP3L (ENSOCUG00000038387) #20	ENSOCUG00000003073	SLC1A3 (ENSOCUG00000021947) #21	NIPBL (ENSOCUG00000005888) #22	CPLANE1 (ENSOCUG00000025870) #23	NUP155 (ENSOCUG00000000170) #24	WDR70 (ENSOCUG00000006883) #25	ENSOCUG00000000065	ENSOCUG00000038540	GDNF (ENSOCUG00000003033) #26	EGFLAM (ENSOCUG00000003322) #27	ENSOCUG00000034940 #27	LIFR (ENSOCUG00000003333) #28	OSMR (ENSOCUG00000012643) #29	RICTOR (ENSOCUG00000012668) #30	FYB1 (ENSOCUG00000012699) #31	C9 (ENSOCUG00000012708) #32	DAB2 (ENSOCUG00000012721) #33	PTGER4 (ENSOCUG00000000895) #35
Pika	MODERN SPECIES	2854																NIPBL (ENSOPRG00000005225) #22
Tree shrew	MODERN SPECIES	3203																NIPBL (ENSTBEG00000004308) #22
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000163740	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.d #16	ENSGT00940000163740	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.d #16	ENSGT00940000163740.b	ENSGT00940000161263.c.b #16	ENSGT00940000163740.a	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.b	ENSGT00940000161263.c.b.a #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740.b	ENSGT00940000161263.c.b.a #16	ENSGT00940000161263.c.a #16	ENSGT00960000193063	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Ursidae	ANCESTRAL SPECIES	24	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.b #16	ENSGT00940000163740.a	ENSGT00940000163740.b	ENSGT00940000161263.c.b.a #16	ENSGT00940000161263.c.a #16	ENSGT00960000193063	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Ursus	ANCESTRAL SPECIES	10	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.b.b #16	ENSGT00940000163740.b	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.b
Polar bear	MODERN SPECIES	179	DNAJC21 (ENSUMAG00000012891) #11	AGXT2 (ENSUMAG00000012885) #12	PRLR (ENSUMAG00000012872) #13	SPEF2 (ENSUMAG00000012225) #14	IL7R (ENSUMAG00000012137)	CAPSL (ENSUMAG00000012126) #15	ENSUMAG00000012110 #16	ENSUMAG00000012100 #16	ENSUMAG00000012092 #16	ENSUMAG00000012086 #16	LMBRD2 (ENSUMAG00000011829) #17	SKP2 (ENSUMAG00000011750) #18	NADK2 (ENSUMAG00000011742) #19	RANBP3L (ENSUMAG00000011732) #20	SLC1A3 (ENSUMAG00000011705) #21	NIPBL (ENSUMAG00000009519) #22	CPLANE1 (ENSUMAG00000009281) #23	NUP155 (ENSUMAG00000008416) #24	ENSUMAG00000008296	WDR70 (ENSUMAG00000008288) #25	GDNF (ENSUMAG00000008259) #26	EGFLAM (ENSUMAG00000008246) #27	LIFR (ENSUMAG00000008233) #28	OSMR (ENSUMAG00000008099) #29	RICTOR (ENSUMAG00000007680) #30	FYB1 (ENSUMAG00000007612) #31	C9 (ENSUMAG00000007604) #32	DAB2 (ENSUMAG00000007591) #33	PTGER4 (ENSUMAG00000007573) #35	TTC33 (ENSUMAG00000007549) #36	PRKAA1 (ENSUMAG00000007543) #37
American black bear	MODERN SPECIES	5127																NIPBL (ENSUAMG00000014856) #22	ENSUAMG00000014836 #23	ENSUAMG00000014833 #23
Giant Panda	MODERN SPECIES	13	DNAJC21 (ENSAMEG00000003283) #11	AGXT2 (ENSAMEG00000003242) #12	PRLR (ENSAMEG00000003202) #13	SPEF2 (ENSAMEG00000008773) #14	IL7R (ENSAMEG00000002557)	CAPSL (ENSAMEG00000002553) #15	ENSAMEG00000028535	ENSAMEG00000012397 #16	ENSAMEG00000002540 #16	ENSAMEG00000025421	LMBRD2 (ENSAMEG00000012359) #17	SKP2 (ENSAMEG00000012330) #18	NADK2 (ENSAMEG00000012313) #19	RANBP3L (ENSAMEG00000012308) #20	SLC1A3 (ENSAMEG00000012282) #21	NIPBL (ENSAMEG00000012191) #22	CPLANE1 (ENSAMEG00000009903) #23	NUP155 (ENSAMEG00000009783) #24	WDR70 (ENSAMEG00000015068) #25	GDNF (ENSAMEG00000015066) #26	EGFLAM (ENSAMEG00000006497) #27	LIFR (ENSAMEG00000006524) #28	ENSAMEG00000028531	OSMR (ENSAMEG00000017152) #29	RICTOR (ENSAMEG00000017120) #30	FYB1 (ENSAMEG00000017105) #31	C9 (ENSAMEG00000017094) #32	DAB2 (ENSAMEG00000017080) #33	PTGER4 (ENSAMEG00000015458) #35	TTC33 (ENSAMEG00000015444) #36	PRKAA1 (ENSAMEG00000015425) #37
Mustelinae	ANCESTRAL SPECIES	13	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.b #16	ENSGT00940000161263.c.a #16	ENSGT00960000193063	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00940000168157.a
American mink	MODERN SPECIES	54	PRLR (ENSNVIG00000003232) #13	SPEF2 (ENSNVIG00000003001) #14	IL7R (ENSNVIG00000002927)	CAPSL (ENSNVIG00000002900) #15	ENSNVIG00000002873 #16	ENSNVIG00000002866	ENSNVIG00000002862	ENSNVIG00000002845 #16	UD3A2 (ENSNVIG00000002797) #16	ENSNVIG00000002781	LMBRD2 (ENSNVIG00000002743) #17	SKP2 (ENSNVIG00000002645) #18	NADK2 (ENSNVIG00000002555) #19	RANBP3L (ENSNVIG00000002499) #20	SLC1A3 (ENSNVIG00000002377) #21	NIPBL (ENSNVIG00000002213) #22	ENSNVIG00000002182 #23	ENSNVIG00000002137 #23
Ferret	MODERN SPECIES	162	BRIX1 (ENSMPUG00000015137) #10	DNAJC21 (ENSMPUG00000015133) #11	AGXT2 (ENSMPUG00000015131) #12	PRLR (ENSMPUG00000015126) #13	ENSMPUG00000015124	SPEF2 (ENSMPUG00000015065) #14	IL7R (ENSMPUG00000015064)	CAPSL (ENSMPUG00000015062) #15	UGT3A2 (ENSMPUG00000015059) #16	LMBRD2 (ENSMPUG00000015056) #17	SKP2 (ENSMPUG00000015054) #18	NADK2 (ENSMPUG00000015050) #19	RANBP3L (ENSMPUG00000015048) #20	SLC1A3 (ENSMPUG00000015046) #21	ENSMPUG00000019323	NIPBL (ENSMPUG00000014922) #22	ENSMPUG00000014900 #23	NUP155 (ENSMPUG00000014895) #24	WDR70 (ENSMPUG00000014890) #25	GDNF (ENSMPUG00000014888) #26	ENSMPUG00000014884	EGFLAM (ENSMPUG00000014860) #27	LIFR (ENSMPUG00000014857) #28	ENSMPUG00000014855	OSMR (ENSMPUG00000014850) #29	RICTOR (ENSMPUG00000014842) #30	FYB1 (ENSMPUG00000014799) #31	C9 (ENSMPUG00000014793) #32	DAB2 (ENSMPUG00000014789) #33	PTGER4 (ENSMPUG00000014788) #35	TTC33 (ENSMPUG00000014786) #36
Canidae	ANCESTRAL SPECIES	7	ENSGT00390000014467 #10	ENSGT00510000047097.o #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.b.e #16	ENSGT00940000163740.a	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00510000047097.o #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.b.e #16	ENSGT00940000161263.c.b.b.f #16	ENSGT00940000161263.c.b.a #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT00950000185104.B	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Dingo	MODERN SPECIES	313	AGXT2 (ENSCAFG00020016746) #12	PRLR (ENSCAFG00020016741) #13	SPEF2 (ENSCAFG00020016703) #14	IL7R (ENSCAFG00020016678)	CAPSL (ENSCAFG00020016671) #15	ENSCAFG00020016667 #16	ENSCAFG00020016662 #16	ENSCAFG00020016660 #16	ENSCAFG00020016659 #16	LMBRD2 (ENSCAFG00020016658) #17	SKP2 (ENSCAFG00020016656) #18	NADK2 (ENSCAFG00020016603) #19	RANBP3L (ENSCAFG00020016590) #20	ENSCAFG00020016588 #21	ENSCAFG00020016583 #21	NIPBL (ENSCAFG00020014920) #22	CPLANE1 (ENSCAFG00020014796) #23	NUP155 (ENSCAFG00020013105) #24	WDR70 (ENSCAFG00020012697) #25	GDNF (ENSCAFG00020012672) #26	ENSCAFG00020012665	EGFLAM (ENSCAFG00020012614) #27	LIFR (ENSCAFG00020012405) #28	ENSCAFG00020012396	OSMR (ENSCAFG00020012366) #29	RICTOR (ENSCAFG00020012256) #30	FYB1 (ENSCAFG00020012241) #31	C9 (ENSCAFG00020012230) #32	DAB2 (ENSCAFG00020012220) #33	ENSCAFG00020012213	PTGER4 (ENSCAFG00020012207) #35
Dog	MODERN SPECIES	32	RAI14 (ENSCAFG00845001107) #7	TTC23L (ENSCAFG00845000983) #8	RAD1 (ENSCAFG00845000923) #9	BRIX1 (ENSCAFG00845000892) #10	DNAJC21 (ENSCAFG00845000877) #11	AGXT2 (ENSCAFG00845000838) #12	PRLR (ENSCAFG00845000774) #13	SPEF2 (ENSCAFG00845000595) #14	IL7R (ENSCAFG00845000499)	UGT3A2 (ENSCAFG00845000393) #16	LMBRD2 (ENSCAFG00845004483) #17	SKP2 (ENSCAFG00845004397) #18	NADK2 (ENSCAFG00845004315) #19	RANBP3L (ENSCAFG00845004270) #20	SLC1A3 (ENSCAFG00845004230) #21	NIPBL (ENSCAFG00845004008) #22	CPLANE1 (ENSCAFG00845003926) #23	NUP155 (ENSCAFG00845003864) #24	WDR70 (ENSCAFG00845003770) #25	GDNF (ENSCAFG00845003744) #26	EGFLAM (ENSCAFG00845003614) #27	LIFR (ENSCAFG00845003525) #28	OSMR (ENSCAFG00845003423) #29	ENSCAFG00845003399	RICTOR (ENSCAFG00845003291) #30	FYB1 (ENSCAFG00845003156) #31	C9 (ENSCAFG00845003087) #32	DAB2 (ENSCAFG00845003005) #33	ENSCAFG00845002938	PTGER4 (ENSCAFG00845002906) #35	TTC33 (ENSCAFG00845002884) #36
Red fox	MODERN SPECIES	127				SPEF2 (ENSVVUG00000010917) #14	IL7R (ENSVVUG00000010886)	CAPSL (ENSVVUG00000010876) #15	ENSVVUG00000010872 #16	ENSVVUG00000010856	ENSVVUG00000010851	ENSVVUG00000010829 #16	LMBRD2 (ENSVVUG00000010794) #17	SKP2 (ENSVVUG00000010772) #18	NADK2 (ENSVVUG00000010762) #19	RANBP3L (ENSVVUG00000010737) #20	SLC1A3 (ENSVVUG00000010719) #21	NIPBL (ENSVVUG00000006711) #22	CPLANE1 (ENSVVUG00000006356) #23	NUP155 (ENSVVUG00000002844) #24	ENSVVUG00000002744 #25	ENSVVUG00000002736	WDR70 (ENSVVUG00000002727) #25	GDNF (ENSVVUG00000002710) #26	EGFLAM (ENSVVUG00000002674) #27	LIFR (ENSVVUG00000002623) #28	OSMR (ENSVVUG00000002587) #29	RICTOR (ENSVVUG00000002528) #30	FYB1 (ENSVVUG00000002410) #31	C9 (ENSVVUG00000002400) #32	DAB2 (ENSVVUG00000002237) #33	PTGER4 (ENSVVUG00000002185) #35	ENSVVUG00000002174 #36
Felidae	ANCESTRAL SPECIES	6	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.d #16	ENSGT00940000163740.b	ENSGT00940000161263.c.b.c.a #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567.fe #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.d #16	ENSGT00940000161263.c.b.c.a #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567.fe #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b.d #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567.fe #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
leopard	MODERN SPECIES	219							ENSPPRG00000005210 #16	LMBRD2 (ENSPPRG00000005202) #17	SKP2 (ENSPPRG00000005174) #18	NADK2 (ENSPPRG00000005027) #19	RANBP3L (ENSPPRG00000004869) #20	ENSPPRG00000011061	ENSPPRG00000004642	ENSPPRG00000004636	SLC1A3 (ENSPPRG00000004584) #21	NIPBL (ENSPPRG00000004319) #22
lion	MODERN SPECIES		RAD1 (ENSPLOG00000017400) #9	BRIX1 (ENSPLOG00000017449) #10	DNAJC21 (ENSPLOG00000017471) #11	AGXT2 (ENSPLOG00000017549) #12	PRLR (ENSPLOG00000017657) #13	SPEF2 (ENSPLOG00000017849) #14	IL7R (ENSPLOG00000018435)	CAPSL (ENSPLOG00000018510) #15	ENSPLOG00000018541 #16	LMBRD2 (ENSPLOG00000018605) #17	SKP2 (ENSPLOG00000018646) #18	NADK2 (ENSPLOG00000018841) #19	RANBP3L (ENSPLOG00000018932) #20	ENSPLOG00000019112	SLC1A3 (ENSPLOG00000019155) #21	NIPBL (ENSPLOG00000019421) #22	CPLANE1 (ENSPLOG00000019536) #23	NUP155 (ENSPLOG00000019604) #24	WDR70 (ENSPLOG00000019708) #25	GDNF (ENSPLOG00000019755) #26	EGFLAM (ENSPLOG00000019854) #27	LIFR (ENSPLOG00000020239) #28	OSMR (ENSPLOG00000020349) #29	RICTOR (ENSPLOG00000020472) #30	FYB1 (ENSPLOG00000000133) #31	C9 (ENSPLOG00000000162) #32	DAB2 (ENSPLOG00000000213) #33	PTGER4 (ENSPLOG00000000266) #35	TTC33 (ENSPLOG00000000278) #36	PRKAA1 (ENSPLOG00000000298) #37	RPL37 (ENSPLOG00000000332)
Tiger	MODERN SPECIES	497									ENSPTIG00000006294 #16	LMBRD2 (ENSPTIG00000000997) #17	SKP2 (ENSPTIG00000019289) #18	NADK2 (ENSPTIG00000015649) #19	RANBP3L (ENSPTIG00000012107) #20	ENSPTIG00000006207	SLC1A3 (ENSPTIG00000006100) #21	NIPBL (ENSPTIG00000017937) #22	CPLANE1 (ENSPTIG00000010544) #23	NUP155 (ENSPTIG00000007172) #24	WDR70 (ENSPTIG00000003961) #25	GDNF (ENSPTIG00000001499) #26	EGFLAM (ENSPTIG00000018864) #27	LIFR (ENSPTIG00000017603) #28	OSMR (ENSPTIG00000015925) #29	RICTOR (ENSPTIG00000010050) #30	FYB1 (ENSPTIG00000001694) #31	C9 (ENSPTIG00000021299) #32	DAB2 (ENSPTIG00000018885) #33	PTGER4 (ENSPTIG00000018762) #35	TTC33 (ENSPTIG00000017527) #36	PRKAA1 (ENSPTIG00000016570) #37	ENSPTIG00000015735
Cat	MODERN SPECIES		AGXT2 (ENSFCAG00000008826) #12	PRLR (ENSFCAG00000008827) #13	SPEF2 (ENSFCAG00000009197) #14	IL7R (ENSFCAG00000009200)	CAPSL (ENSFCAG00000009201) #15	ENSFCAG00000001017 #16	ENSFCAG00000043306	ENSFCAG00000050961 #16	ENSFCAG00000043179 #16	LMBRD2 (ENSFCAG00000022078) #17	SKP2 (ENSFCAG00000001018) #18	NADK2 (ENSFCAG00000029498) #19	RANBP3L (ENSFCAG00000001019) #20	ENSFCAG00000025957	SLC1A3 (ENSFCAG00000005554) #21	NIPBL (ENSFCAG00000003873) #22	CPLANE1 (ENSFCAG00000013871) #23	NUP155 (ENSFCAG00000013875) #24	WDR70 (ENSFCAG00000010442) #25	GDNF (ENSFCAG00000037326) #26	EGFLAM (ENSFCAG00000010468) #27	LIFR (ENSFCAG00000018250) #28	OSMR (ENSFCAG00000008082) #29	RICTOR (ENSFCAG00000008083) #30	FYB1 (ENSFCAG00000008084) #31	C9 (ENSFCAG00000013123) #32	DAB2 (ENSFCAG00000013125) #33	PTGER4 (ENSFCAG00000036856) #35	TTC33 (ENSFCAG00000014572) #36	PRKAA1 (ENSFCAG00000023817) #37	ENSFCAG00000035948
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Equus	ANCESTRAL SPECIES	23	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.a.a.a.a #16	ENSGT00940000161263.c.a.a.b #16	ENSGT00940000161263.c.a.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Donkey	MODERN SPECIES	1	RAD1 (ENSEASG00005014974) #9	DNAJC21 (ENSEASG00005014955) #11	AGXT2 (ENSEASG00005014944) #12	PRLR (ENSEASG00005014937) #13	SPEF2 (ENSEASG00005014828) #14	IL7R (ENSEASG00005014779)	CAPSL (ENSEASG00005014775) #15	ENSEASG00005014770 #16	ENSEASG00005014762 #16	ENSEASG00005014765 #16	LMBRD2 (ENSEASG00005014695) #17	SKP2 (ENSEASG00005014686) #18	NADK2 (ENSEASG00005014681) #19	RANBP3L (ENSEASG00005014674) #20	SLC1A3 (ENSEASG00005014668) #21	NIPBL (ENSEASG00005014299) #22	CPLANE1 (ENSEASG00005014288) #23	NUP155 (ENSEASG00005014066) #24	WDR70 (ENSEASG00005013976) #25	GDNF (ENSEASG00005028766) #26	EGFLAM (ENSEASG00005013967) #27	LIFR (ENSEASG00005013963) #28	OSMR (ENSEASG00005013962) #29	RICTOR (ENSEASG00005013952) #30	FYB1 (ENSEASG00005013945) #31	C9 (ENSEASG00005013943) #32	DAB2 (ENSEASG00005013938) #33	PTGER4 (ENSEASG00005013933) #35	ENSEASG00005038518	TTC33 (ENSEASG00005013930) #36	ENSEASG00005027374 #37
Horse	MODERN SPECIES	13	ENSECAG00000059345 #16	ENSECAG00000048541 #16	ENSECAG00000055389 #16	ENSECAG00000036014	CAPSL (ENSECAG00000010832) #15	ENSECAG00000035248 #16	ENSECAG00000044198 #16	ENSECAG00000053165 #16	ENSECAG00000034415 #16	ENSECAG00000050016 #16	LMBRD2 (ENSECAG00000019855) #17	SKP2 (ENSECAG00000013147) #18	NADK2 (ENSECAG00000019847) #19	RANBP3L (ENSECAG00000016984) #20	SLC1A3 (ENSECAG00000019371) #21	NIPBL (ENSECAG00000018233) #22	CPLANE1 (ENSECAG00000012226) #23	ENSECAG00000004795	ENSECAG00000043887	NUP155 (ENSECAG00000006239) #24	ENSECAG00000049432	WDR70 (ENSECAG00000037284) #25	GDNF (ENSECAG00000037655) #26	EGFLAM (ENSECAG00000014194) #27	LIFR (ENSECAG00000020208) #28	OSMR (ENSECAG00000019438) #29	RICTOR (ENSECAG00000000308) #30	FYB1 (ENSECAG00000016675) #31	C9 (ENSECAG00000007865) #32	DAB2 (ENSECAG00000013597) #33	PTGER4 (ENSECAG00000011145) #35
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.d #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Megabat	MODERN SPECIES	1414						SPEF2 (ENSPVAG00000001509) #14	IL7R (ENSPVAG00000001512)	CAPSL (ENSPVAG00000001517) #15	UGT3A2 (ENSPVAG00000001518) #16	LMBRD2 (ENSPVAG00000001519) #17	SKP2 (ENSPVAG00000001524) #18	ENSPVAG00000001526 #19	ENSPVAG00000001527 #19	RANBP3L (ENSPVAG00000001528) #20	SLC1A3 (ENSPVAG00000001532) #21	NIPBL (ENSPVAG00000001535) #22	ENSPVAG00000001540 #23	ENSPVAG00000001543 #23
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.d #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Microbat	MODERN SPECIES	1005	ENSMLUG00000023323	RAI14 (ENSMLUG00000015329) #7	RAD1 (ENSMLUG00000015349) #9	BRIX1 (ENSMLUG00000029255) #10	DNAJC21 (ENSMLUG00000000230) #11	AGXT2 (ENSMLUG00000001757) #12	PRLR (ENSMLUG00000001770) #13	SPEF2 (ENSMLUG00000009767) #14	IL7R (ENSMLUG00000009826)	CAPSL (ENSMLUG00000009846) #15	UGT3A2 (ENSMLUG00000027510) #16	LMBRD2 (ENSMLUG00000002675) #17	SKP2 (ENSMLUG00000002682) #18	NADK2 (ENSMLUG00000002689) #19	RANBP3L (ENSMLUG00000002697) #20	NIPBL (ENSMLUG00000001724) #22	ENSMLUG00000011746 #23	ENSMLUG00000029621 #23	NUP155 (ENSMLUG00000014272) #24	WDR70 (ENSMLUG00000004998) #25	GDNF (ENSMLUG00000005002) #26	EGFLAM (ENSMLUG00000012866) #27	LIFR (ENSMLUG00000015027) #28	OSMR (ENSMLUG00000005743) #29	RICTOR (ENSMLUG00000005754) #30	FYB1 (ENSMLUG00000002937) #31	C9 (ENSMLUG00000005440) #32	DAB2 (ENSMLUG00000005444) #33	ENSMLUG00000027508	ENSMLUG00000006820	ENSMLUG00000030031
Greater horseshoe bat	MODERN SPECIES	25	BRIX1 (ENSRFEG00010012614) #10	DNAJC21 (ENSRFEG00010012751) #11	AGXT2 (ENSRFEG00010012865) #12	PRLR (ENSRFEG00010013231) #13	SPEF2 (ENSRFEG00010013425) #14	IL7R (ENSRFEG00010014489)	CAPSL (ENSRFEG00010014607) #15	ENSRFEG00010014666	LMBRD2 (ENSRFEG00010014757) #17	SKP2 (ENSRFEG00010014800) #18	NADK2 (ENSRFEG00010015059) #19	RANBP3L (ENSRFEG00010015333) #20	ENSRFEG00010015427	SLC1A3 (ENSRFEG00010015494) #21	ENSRFEG00010015743	NIPBL (ENSRFEG00010015832) #22	CPLANE1 (ENSRFEG00010015958) #23	NUP155 (ENSRFEG00010016030) #24	WDR70 (ENSRFEG00010016145) #25	GDNF (ENSRFEG00010016423) #26	EGFLAM (ENSRFEG00010016511) #27	LIFR (ENSRFEG00010016911) #28	OSMR (ENSRFEG00010016947) #29	RICTOR (ENSRFEG00010017013) #30	FYB1 (ENSRFEG00010017159) #31	C9 (ENSRFEG00010017279) #32	DAB2 (ENSRFEG00010017317) #33	PTGER4 (ENSRFEG00010017531) #35	ENSRFEG00010017563	TTC33 (ENSRFEG00010017587) #36	PRKAA1 (ENSRFEG00010017640) #37
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36
Suina	ANCESTRAL SPECIES	25	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT01090000262500	ENSGT00390000017462 #36
Pig	MODERN SPECIES	7	TTC23L (ENSSSCG00000061389) #8	RAD1 (ENSSSCG00000016826) #9	BRIX1 (ENSSSCG00000016827) #10	ENSSSCG00000016828	AGXT2 (ENSSSCG00000016829) #12	PRLR (ENSSSCG00000016830) #13	SPEF2 (ENSSSCG00000016831) #14	IL7R (ENSSSCG00000016832)	CAPSL (ENSSSCG00000031959) #15	LMBRD2 (ENSSSCG00000016834) #17	SKP2 (ENSSSCG00000016835) #18	NADK2 (ENSSSCG00000016836) #19	ENSSSCG00000016837	RANBP3L (ENSSSCG00000016838) #20	SLC1A3 (ENSSSCG00000016841) #21	NIPBL (ENSSSCG00000016842) #22	CPLANE1 (ENSSSCG00000016843) #23	NUP155 (ENSSSCG00000016845) #24	WDR70 (ENSSSCG00000016846) #25	GDNF (ENSSSCG00000038727) #26	ENSSSCG00000045434	EGFLAM (ENSSSCG00000016848) #27	LIFR (ENSSSCG00000016850) #28	OSMR (ENSSSCG00000016851) #29	RICTOR (ENSSSCG00000016853) #30	FYB1 (ENSSSCG00000016855) #31	C9 (ENSSSCG00000016856) #32	DAB2 (ENSSSCG00000016857) #33	ENSSSCG00000044033	ENSSSCG00000061479	PTGER4 (ENSSSCG00000024439) #35
Chacoan peccary	MODERN SPECIES	7	RAI14 (ENSCWAG00000000903) #7	TTC23L (ENSCWAG00000001093) #8	RAD1 (ENSCWAG00000001165) #9	BRIX1 (ENSCWAG00000001189) #10	DNAJC21 (ENSCWAG00000001217) #11	AGXT2 (ENSCWAG00000001257) #12	PRLR (ENSCWAG00000001319) #13	SPEF2 (ENSCWAG00000001552) #14	IL7R (ENSCWAG00000001723)	CAPSL (ENSCWAG00000001793) #15	LMBRD2 (ENSCWAG00000001811) #17	SKP2 (ENSCWAG00000001863) #18	NADK2 (ENSCWAG00000001928) #19	RANBP3L (ENSCWAG00000002083) #20	SLC1A3 (ENSCWAG00000002268) #21	NIPBL (ENSCWAG00000002371) #22	CPLANE1 (ENSCWAG00000002502) #23	NUP155 (ENSCWAG00000002550) #24	WDR70 (ENSCWAG00000002608) #25	ENSCWAG00000002634 #26	EGFLAM (ENSCWAG00000002665) #27	LIFR (ENSCWAG00000002882) #28	OSMR (ENSCWAG00000002899) #29	RICTOR (ENSCWAG00000002954) #30	FYB1 (ENSCWAG00000003152) #31	C9 (ENSCWAG00000003303) #32	DAB2 (ENSCWAG00000003433) #33	PTGER4 (ENSCWAG00000003457) #35	ENSCWAG00000003465	TTC33 (ENSCWAG00000003468) #36	PRKAA1 (ENSCWAG00000003485) #37
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT01010000228899	ENSGT00530000063460.A.b #31	ENSGT00940000153239.B.n	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT01010000228899	ENSGT00530000063460.A.b #31	ENSGT00940000153239.B.n	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT01010000228899	ENSGT00530000063460.A.b #31	ENSGT00940000153239.B.n	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000155725.c.b	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT01010000228899	ENSGT00530000063460.A.b #31	ENSGT00940000153239.B.n	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000155725.c.b	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT01010000228899	ENSGT00530000063460.A.b #31	ENSGT00940000153239.B.n	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35
Narwhal	MODERN SPECIES	298	RAI14 (ENSMMNG00015000977) #7	TTC23L (ENSMMNG00015001151) #8	RAD1 (ENSMMNG00015001183) #9	BRIX1 (ENSMMNG00015001209) #10	DNAJC21 (ENSMMNG00015001248) #11	AGXT2 (ENSMMNG00015001316) #12	PRLR (ENSMMNG00015001418) #13	ENSMMNG00015001476	SPEF2 (ENSMMNG00015001621) #14	IL7R (ENSMMNG00015001861)	CAPSL (ENSMMNG00015001898) #15	LMBRD2 (ENSMMNG00015001929) #17	SKP2 (ENSMMNG00015002022) #18	RANBP3L (ENSMMNG00015002191) #20	SLC1A3 (ENSMMNG00015002486) #21	NIPBL (ENSMMNG00015002616) #22	CPLANE1 (ENSMMNG00015002752) #23	NUP155 (ENSMMNG00015002811) #24	WDR70 (ENSMMNG00015002899) #25	GDNF (ENSMMNG00015003016) #26	ENSMMNG00015003038	EGFLAM (ENSMMNG00015003099) #27	LIFR (ENSMMNG00015003256) #28	ENSMMNG00015003285	ENSMMNG00015003299	OSMR (ENSMMNG00015003314) #29	RICTOR (ENSMMNG00015003392) #30	ENSMMNG00015003438	FYB1 (ENSMMNG00015003499) #31	ENSMMNG00015003575	C9 (ENSMMNG00015003592) #32
Beluga whale	MODERN SPECIES	71	RAI14 (ENSDLEG00000013361) #7	TTC23L (ENSDLEG00000013339) #8	RAD1 (ENSDLEG00000013328) #9	BRIX1 (ENSDLEG00000013316) #10	DNAJC21 (ENSDLEG00000013295) #11	AGXT2 (ENSDLEG00000013263) #12	PRLR (ENSDLEG00000013243) #13	ENSDLEG00000013232 #14	IL7R (ENSDLEG00000013219)	CAPSL (ENSDLEG00000013190) #15	LMBRD2 (ENSDLEG00000013120) #17	SKP2 (ENSDLEG00000013093) #18	NADK2 (ENSDLEG00000013071) #19	RANBP3L (ENSDLEG00000012986) #20	SLC1A3 (ENSDLEG00000012807) #21	NIPBL (ENSDLEG00000012577) #22	CPLANE1 (ENSDLEG00000012250) #23	NUP155 (ENSDLEG00000011741) #24	WDR70 (ENSDLEG00000011311) #25	GDNF (ENSDLEG00000011285) #26	EGFLAM (ENSDLEG00000011222) #27	LIFR (ENSDLEG00000011161) #28	ENSDLEG00000011140	OSMR (ENSDLEG00000011096) #29	RICTOR (ENSDLEG00000008761) #30	ENSDLEG00000008508	ENSDLEG00000008494 #31	ENSDLEG00000008481	C9 (ENSDLEG00000008449) #32	DAB2 (ENSDLEG00000008396) #33	PTGER4 (ENSDLEG00000008354) #35
Vaquita	MODERN SPECIES	14	RAI14 (ENSPSNG00000005972) #7	TTC23L (ENSPSNG00000005753) #8	RAD1 (ENSPSNG00000005726) #9	BRIX1 (ENSPSNG00000005692) #10	DNAJC21 (ENSPSNG00000005656) #11	AGXT2 (ENSPSNG00000005555) #12	PRLR (ENSPSNG00000005448) #13	SPEF2 (ENSPSNG00000005370) #14	IL7R (ENSPSNG00000005251)	CAPSL (ENSPSNG00000005192) #15	LMBRD2 (ENSPSNG00000005130) #17	SKP2 (ENSPSNG00000004995) #18	NADK2 (ENSPSNG00000004871) #19	RANBP3L (ENSPSNG00000004771) #20	SLC1A3 (ENSPSNG00000004628) #21	NIPBL (ENSPSNG00000004448) #22	CPLANE1 (ENSPSNG00000004315) #23	NUP155 (ENSPSNG00000004202) #24	WDR70 (ENSPSNG00000004131) #25	GDNF (ENSPSNG00000004104) #26	EGFLAM (ENSPSNG00000003979) #27	LIFR (ENSPSNG00000003881) #28	ENSPSNG00000003863	ENSPSNG00000003851	OSMR (ENSPSNG00000003821) #29	RICTOR (ENSPSNG00000003768) #30	ENSPSNG00000003737	FYB1 (ENSPSNG00000003635) #31	C9 (ENSPSNG00000003566) #32	DAB2 (ENSPSNG00000003484) #33	ENSPSNG00000003449
Dolphin	MODERN SPECIES	1510																NIPBL (ENSTTRG00000016062) #22	ENSTTRG00000016081 #23	ENSTTRG00000016083 #23
Sperm whale	MODERN SPECIES	19	ENSPCTG00005011625	RAI14 (ENSPCTG00005011735) #7	TTC23L (ENSPCTG00005012009) #8	RAD1 (ENSPCTG00005012117) #9	BRIX1 (ENSPCTG00005012142) #10	DNAJC21 (ENSPCTG00005012221) #11	AGXT2 (ENSPCTG00005012291) #12	PRLR (ENSPCTG00005012585) #13	SPEF2 (ENSPCTG00005012801) #14	IL7R (ENSPCTG00005012898)	CAPSL (ENSPCTG00005013172) #15	LMBRD2 (ENSPCTG00005013304) #17	NADK2 (ENSPCTG00005013471) #19	RANBP3L (ENSPCTG00005013974) #20	SLC1A3 (ENSPCTG00005014533) #21	NIPBL (ENSPCTG00005014793) #22	CPLANE1 (ENSPCTG00005015256) #23	NUP155 (ENSPCTG00005015912) #24	WDR70 (ENSPCTG00005016122) #25	GDNF (ENSPCTG00005016211) #26	EGFLAM (ENSPCTG00005016321) #27	LIFR (ENSPCTG00005017295) #28	ENSPCTG00005017392	OSMR (ENSPCTG00005017459) #29	RICTOR (ENSPCTG00005017549) #30	ENSPCTG00005017725 #31	ENSPCTG00005017759	C9 (ENSPCTG00005017803) #32	DAB2 (ENSPCTG00005017944) #33	PTGER4 (ENSPCTG00005018041) #35	TTC33 (ENSPCTG00005018058) #36
Blue whale	MODERN SPECIES	14	RAI14 (ENSBMSG00010000365) #7	TTC23L (ENSBMSG00010000402) #8	RAD1 (ENSBMSG00010000429) #9	BRIX1 (ENSBMSG00010000442) #10	DNAJC21 (ENSBMSG00010000475) #11	AGXT2 (ENSBMSG00010000550) #12	PRLR (ENSBMSG00010000623) #13	SPEF2 (ENSBMSG00010000704) #14	IL7R (ENSBMSG00010000757)	CAPSL (ENSBMSG00010000820) #15	LMBRD2 (ENSBMSG00010000840) #17	SKP2 (ENSBMSG00010000865) #18	NADK2 (ENSBMSG00010000976) #19	RANBP3L (ENSBMSG00010001078) #20	SLC1A3 (ENSBMSG00010001259) #21	NIPBL (ENSBMSG00010001354) #22	CPLANE1 (ENSBMSG00010001402) #23	NUP155 (ENSBMSG00010001449) #24	WDR70 (ENSBMSG00010001492) #25	GDNF (ENSBMSG00010001506) #26	EGFLAM (ENSBMSG00010001547) #27	OSMR (ENSBMSG00010001765) #29	RICTOR (ENSBMSG00010001806) #30	ENSBMSG00010001865	ENSBMSG00010001871 #31	ENSBMSG00010001877	C9 (ENSBMSG00010001883) #32	DAB2 (ENSBMSG00010001905) #33	PTGER4 (ENSBMSG00010001942) #35	TTC33 (ENSBMSG00010001948) #36	PRKAA1 (ENSBMSG00010001960) #37
Pecora	ANCESTRAL SPECIES	25	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Percora_a	ANCESTRAL SPECIES	26	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000163740	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Bovidae	ANCESTRAL SPECIES	26	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Caprinae	ANCESTRAL SPECIES	24	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a.e #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Goat	MODERN SPECIES	12	ENSCHIG00000015230 #9	BRIX1 (ENSCHIG00000015024) #10	DNAJC21 (ENSCHIG00000012397) #11	AGXT2 (ENSCHIG00000022227) #12	PRLR (ENSCHIG00000010864) #13	SPEF2 (ENSCHIG00000027077) #14	IL7R (ENSCHIG00000020828)	CAPSL (ENSCHIG00000014309) #15	ENSCHIG00000015428 #16	ENSCHIG00000020305 #16	LMBRD2 (ENSCHIG00000026984) #17	ENSCHIG00000019384 #18	NADK2 (ENSCHIG00000012491) #19	RANBP3L (ENSCHIG00000023865) #20	SLC1A3 (ENSCHIG00000017045) #21	NIPBL (ENSCHIG00000011197) #22	CPLANE1 (ENSCHIG00000022182) #23	NUP155 (ENSCHIG00000016985) #24	WDR70 (ENSCHIG00000012219) #25	GDNF (ENSCHIG00000023187) #26	EGFLAM (ENSCHIG00000019067) #27	LIFR (ENSCHIG00000014349) #28	OSMR (ENSCHIG00000009367) #29	RICTOR (ENSCHIG00000022858) #30	FYB1 (ENSCHIG00000018413) #31	C9 (ENSCHIG00000014791) #32	DAB2 (ENSCHIG00000009529) #33	PTGER4 (ENSCHIG00000023835) #35	TTC33 (ENSCHIG00000020642) #36	PRKAA1 (ENSCHIG00000017495) #37	RPL37 (ENSCHIG00000014444)
Rambouillet Sheep	MODERN SPECIES	7	TTC23L (ENSOARG00020016888) #8	RAD1 (ENSOARG00020016824) #9	BRIX1 (ENSOARG00020016774) #10	DNAJC21 (ENSOARG00020016700) #11	AGXT2 (ENSOARG00020016569) #12	PRLR (ENSOARG00020016333) #13	SPEF2 (ENSOARG00020016036) #14	CAPSL (ENSOARG00020015725) #15	ENSOARG00020015572 #16	ENSOARG00020015402 #16	LMBRD2 (ENSOARG00020015223) #17	ENSOARG00020014918 #18	NADK2 (ENSOARG00020014421) #19	RANBP3L (ENSOARG00020014079) #20	SLC1A3 (ENSOARG00020013733) #21	NIPBL (ENSOARG00020013253) #22	NUP155 (ENSOARG00020012252) #24	WDR70 (ENSOARG00020011861) #25	GDNF (ENSOARG00020011807) #26	EGFLAM (ENSOARG00020011103) #27	LIFR (ENSOARG00020010940) #28	ENSOARG00020010918	RICTOR (ENSOARG00020009257) #30	FYB1 (ENSOARG00020009055) #31	C9 (ENSOARG00020008908) #32	DAB2 (ENSOARG00020008646) #33	ENSOARG00020008514	PTGER4 (ENSOARG00020008466) #35	TTC33 (ENSOARG00020008406) #36	PRKAA1 (ENSOARG00020008087) #37	RPL37 (ENSOARG00020007993)
Bovinae	ANCESTRAL SPECIES	25	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000163740	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a.d #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Bos	ANCESTRAL SPECIES	26	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000163740	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a.d #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.s #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37
Bos_a	ANCESTRAL SPECIES	38	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000163740	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a.d #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.t #23	ENSGT00800000124150.s #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00980000202544	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36
Domestic yak	MODERN SPECIES	15	TTC23L (ENSBGRG00000011616) #8	RAD1 (ENSBGRG00000012046) #9	BRIX1 (ENSBGRG00000012102) #10	DNAJC21 (ENSBGRG00000012242) #11	AGXT2 (ENSBGRG00000012345) #12	PRLR (ENSBGRG00000012695) #13	SPEF2 (ENSBGRG00000013281) #14	IL7R (ENSBGRG00000016149)	CAPSL (ENSBGRG00000016371) #15	UGT3A2 (ENSBGRG00000016507) #16	LMBRD2 (ENSBGRG00000016978) #17	SKP2 (ENSBGRG00000017074) #18	NADK2 (ENSBGRG00000017418) #19	RANBP3L (ENSBGRG00000018471) #20	SLC1A3 (ENSBGRG00000018553) #21	NIPBL (ENSBGRG00000018858) #22	ENSBGRG00000020280	CPLANE1 (ENSBGRG00000020312) #23	NUP155 (ENSBGRG00000020642) #24	WDR70 (ENSBGRG00000021511) #25	GDNF (ENSBGRG00000021590) #26	EGFLAM (ENSBGRG00000021685) #27	ENSBGRG00000022731	LIFR (ENSBGRG00000022759) #28	ENSBGRG00000022886	OSMR (ENSBGRG00000022920) #29	RICTOR (ENSBGRG00000023459) #30	ENSBGRG00000023878	FYB1 (ENSBGRG00000023892) #31	C9 (ENSBGRG00000023994) #32	DAB2 (ENSBGRG00000024066) #33
Wild yak	MODERN SPECIES	2003															SLC1A3 (ENSBMUG00000004341) #21	NIPBL (ENSBMUG00000004221) #22	ENSBMUG00000004044 #23
Bos_b	ANCESTRAL SPECIES	29	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.b #16	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918.g.a.d #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.a.b.a	ENSGT00390000010427.c #22	ENSGT00800000124150.s #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Cow	MODERN SPECIES	12	BRIX1 (ENSBTAG00000019211) #10	DNAJC21 (ENSBTAG00000015648) #11	AGXT2 (ENSBTAG00000007690) #12	PRLR (ENSBTAG00000025035) #13	SPEF2 (ENSBTAG00000023529) #14	IL7R (ENSBTAG00000019975)	CAPSL (ENSBTAG00000012688) #15	ENSBTAG00000050563 #16	UGT3A2 (ENSBTAG00000002701) #16	LMBRD2 (ENSBTAG00000020142) #17	SKP2 (ENSBTAG00000013562) #18	NADK2 (ENSBTAG00000011334) #19	RANBP3L (ENSBTAG00000008430) #20	SLC1A3 (ENSBTAG00000018245) #21	ENSBTAG00000050782	NIPBL (ENSBTAG00000000579) #22	CPLANE1 (ENSBTAG00000000586) #23	NUP155 (ENSBTAG00000002458) #24	WDR70 (ENSBTAG00000033095) #25	GDNF (ENSBTAG00000005176) #26	EGFLAM (ENSBTAG00000019595) #27	LIFR (ENSBTAG00000010423) #28	OSMR (ENSBTAG00000033107) #29	RICTOR (ENSBTAG00000006697) #30	FYB1 (ENSBTAG00000001492) #31	C9 (ENSBTAG00000016149) #32	DAB2 (ENSBTAG00000016152) #33	PTGER4 (ENSBTAG00000014972) #35	TTC33 (ENSBTAG00000000012) #36	PRKAA1 (ENSBTAG00000000013) #37	RPL37 (ENSBTAG00000005142)
Hybrid Bos Indicus	MODERN SPECIES	12	BRIX1 (ENSBIXG00005007985) #10	DNAJC21 (ENSBIXG00005008004) #11	AGXT2 (ENSBIXG00005008036) #12	PRLR (ENSBIXG00005008071) #13	SPEF2 (ENSBIXG00005008122) #14	IL7R (ENSBIXG00005008159)	CAPSL (ENSBIXG00005008180) #15	UGT3A2 (ENSBIXG00005008226) #16	LMBRD2 (ENSBIXG00005008255) #17	ENSBIXG00005008265	ENSBIXG00005008301 #18	NADK2 (ENSBIXG00005005459) #19	RANBP3L (ENSBIXG00005008350) #20	SLC1A3 (ENSBIXG00005000188) #21	ENSBIXG00005000192	NIPBL (ENSBIXG00005008477) #22	CPLANE1 (ENSBIXG00005008503) #23	NUP155 (ENSBIXG00005008569) #24	WDR70 (ENSBIXG00005008644) #25	GDNF (ENSBIXG00005008679) #26	EGFLAM (ENSBIXG00005008798) #27	LIFR (ENSBIXG00005008844) #28	OSMR (ENSBIXG00005008909) #29	ENSBIXG00005008919	RICTOR (ENSBIXG00005009018) #30	FYB1 (ENSBIXG00005009080) #31	C9 (ENSBIXG00005009100) #32	DAB2 (ENSBIXG00005009202) #33	PTGER4 (ENSBIXG00005009279) #35	TTC33 (ENSBIXG00005009287) #36	PRKAA1 (ENSBIXG00005009308) #37
American bison	MODERN SPECIES	3245	RAD1 (ENSBBBG00000022772) #9	BRIX1 (ENSBBBG00000022789) #10	DNAJC21 (ENSBBBG00000022839) #11	AGXT2 (ENSBBBG00000022909) #12	PRLR (ENSBBBG00000023002) #13	SPEF2 (ENSBBBG00000006068) #14	IL7R (ENSBBBG00000000453)	CAPSL (ENSBBBG00000000430) #15	UGT3A1 (ENSBBBG00000000374)	UGT3A2 (ENSBBBG00000000338) #16	LMBRD2 (ENSBBBG00000023202) #17	ENSBBBG00000023284 #18	NADK2 (ENSBBBG00000023410) #19	RANBP3L (ENSBBBG00000023472) #20	SLC1A3 (ENSBBBG00000023563) #21	NIPBL (ENSBBBG00000006181) #22	CPLANE1 (ENSBBBG00000023780) #23	NUP155 (ENSBBBG00000023976) #24	WDR70 (ENSBBBG00000024014) #25	GDNF (ENSBBBG00000024032) #26	EGFLAM (ENSBBBG00000024243) #27	LIFR (ENSBBBG00000008997) #28	OSMR (ENSBBBG00000024414) #29	RICTOR (ENSBBBG00000024605) #30	FYB1 (ENSBBBG00000024722) #31	C9 (ENSBBBG00000024759) #32	DAB2 (ENSBBBG00000024953) #33	ENSBBBG00000006604	PTGER4 (ENSBBBG00000025021) #35	TTC33 (ENSBBBG00000006615) #36	PRKAA1 (ENSBBBG00000006659) #37
Siberian musk deer	MODERN SPECIES	1235	RAD1 (ENSMMSG00000016208) #9	BRIX1 (ENSMMSG00000016235) #10	ENSMMSG00000016277 #11	AGXT2 (ENSMMSG00000016313) #12	PRLR (ENSMMSG00000016498) #13	SPEF2 (ENSMMSG00000016639) #14	ENSMMSG00000016730	IL7R (ENSMMSG00000016755)	CAPSL (ENSMMSG00000016801) #15	LMBRD2 (ENSMMSG00000016846) #17	ENSMMSG00000016867 #18	ENSMMSG00000016893 #18	ENSMMSG00000016974 #19	RANBP3L (ENSMMSG00000017537) #20	SLC1A3 (ENSMMSG00000017722) #21	NIPBL (ENSMMSG00000017930) #22	CPLANE1 (ENSMMSG00000018124) #23	NUP155 (ENSMMSG00000018372) #24	WDR70 (ENSMMSG00000018497) #25	GDNF (ENSMMSG00000018647) #26	ENSMMSG00000018703	ENSMMSG00000018725	EGFLAM (ENSMMSG00000018823) #27	LIFR (ENSMMSG00000019030) #28	OSMR (ENSMMSG00000019092) #29	RICTOR (ENSMMSG00000019199) #30	FYB1 (ENSMMSG00000019572) #31	C9 (ENSMMSG00000019814) #32	DAB2 (ENSMMSG00000019922) #33	ENSMMSG00000020059	PTGER4 (ENSMMSG00000020089) #35
Yarkand deer	MODERN SPECIES	17	RAD1 (ENSCHYG00000025713) #9	BRIX1 (ENSCHYG00000025666) #10	DNAJC21 (ENSCHYG00000025625) #11	AGXT2 (ENSCHYG00000025548) #12	PRLR (ENSCHYG00000025463) #13	SPEF2 (ENSCHYG00000023839) #14	IL7R (ENSCHYG00000023606)	CAPSL (ENSCHYG00000023527) #15	ENSCHYG00000023380 #16	ENSCHYG00000023303 #16	LMBRD2 (ENSCHYG00000023255) #17	ENSCHYG00000023154 #18	NADK2 (ENSCHYG00000023009) #19	RANBP3L (ENSCHYG00000022913) #20	SLC1A3 (ENSCHYG00000022666) #21	NIPBL (ENSCHYG00000022479) #22	CPLANE1 (ENSCHYG00000022035) #23	NUP155 (ENSCHYG00000021563) #24	WDR70 (ENSCHYG00000021169) #25	GDNF (ENSCHYG00000021089) #26	ENSCHYG00000021006	EGFLAM (ENSCHYG00000020383) #27	LIFR (ENSCHYG00000020189) #28	OSMR (ENSCHYG00000019839) #29	RICTOR (ENSCHYG00000019087) #30	FYB1 (ENSCHYG00000018867) #31	C9 (ENSCHYG00000018644) #32	DAB2 (ENSCHYG00000017878) #33	ENSCHYG00000017787	PTGER4 (ENSCHYG00000017728) #35	TTC33 (ENSCHYG00000017689) #36
Camelidae	ANCESTRAL SPECIES	1	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.c.a #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Arabian camel	MODERN SPECIES	22	TTC23L (ENSCDRG00005001796) #8	RAD1 (ENSCDRG00005001766) #9	BRIX1 (ENSCDRG00005001754) #10	DNAJC21 (ENSCDRG00005001727) #11	AGXT2 (ENSCDRG00005001670) #12	PRLR (ENSCDRG00005001501) #13	SPEF2 (ENSCDRG00005001102) #14	IL7R (ENSCDRG00005001012)	CAPSL (ENSCDRG00005000953) #15	UGT3A2 (ENSCDRG00005000840) #16	LMBRD2 (ENSCDRG00005000770) #17	SKP2 (ENSCDRG00005000709) #18	NADK2 (ENSCDRG00005000629) #19	RANBP3L (ENSCDRG00005000572) #20	SLC1A3 (ENSCDRG00005000503) #21	NIPBL (ENSCDRG00005000397) #22	CPLANE1 (ENSCDRG00005000143) #23	NUP155 (ENSCDRG00005018373) #24	WDR70 (ENSCDRG00005018283) #25	GDNF (ENSCDRG00005018248) #26	EGFLAM (ENSCDRG00005017766) #27	LIFR (ENSCDRG00005017655) #28	OSMR (ENSCDRG00005017567) #29	RICTOR (ENSCDRG00005017323) #30	FYB1 (ENSCDRG00005017167) #31	C9 (ENSCDRG00005017085) #32	DAB2 (ENSCDRG00005016789) #33	PTGER4 (ENSCDRG00005016717) #35	TTC33 (ENSCDRG00005016688) #36	PRKAA1 (ENSCDRG00005016610) #37	RPL37 (ENSCDRG00005016487)
Alpaca	MODERN SPECIES	1580										LMBRD2 (ENSVPAG00000004362) #17	SKP2 (ENSVPAG00000004364) #18	NADK2 (ENSVPAG00000004365) #19	ENSVPAG00000004368	RANBP3L (ENSVPAG00000004370) #20	SLC1A3 (ENSVPAG00000004372) #21	NIPBL (ENSVPAG00000004375) #22	ENSVPAG00000004376 #23	ENSVPAG00000004380 #23	NUP155 (ENSVPAG00000004381) #24	WDR70 (ENSVPAG00000004382) #25	GDNF (ENSVPAG00000004384) #26	EGFLAM (ENSVPAG00000004385) #27	LIFR (ENSVPAG00000004387) #28	OSMR (ENSVPAG00000004392) #29	RICTOR (ENSVPAG00000004393) #30	FYB1 (ENSVPAG00000004395) #31	C9 (ENSVPAG00000004396) #32	DAB2 (ENSVPAG00000004398) #33
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000010427.c #22
Hedgehog	MODERN SPECIES	5762																NIPBL (ENSEEUG00000001518) #22
Common shrew	MODERN SPECIES	4477																NIPBL (ENSSARG00000000482) #22
Atlantogenata	ANCESTRAL SPECIES		ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.k.a #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.a.a
Xenarthra	ANCESTRAL SPECIES	928															ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.k.a #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25
Sloth	MODERN SPECIES	5134																NIPBL (ENSCHOG00000000506) #22
Armadillo	MODERN SPECIES	349															SLC1A3 (ENSDNOG00000046806) #21	NIPBL (ENSDNOG00000010864) #22	CPLANE1 (ENSDNOG00000039178) #23	NUP155 (ENSDNOG00000011282) #24	WDR70 (ENSDNOG00000041272) #25	ENSDNOG00000038461	GDNF (ENSDNOG00000046868) #26	ENSDNOG00000009594 #36	ENSDNOG00000037127
Afrotheria	ANCESTRAL SPECIES	12	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.k.a #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.b
Afrotheria_a	ANCESTRAL SPECIES	12	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150.k.a #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.i.a.a.b
Elephant	MODERN SPECIES	526	RAD1 (ENSLAFG00000007248) #9	BRIX1 (ENSLAFG00000007249) #10	ENSLAFG00000026820 #11	ENSLAFG00000007251 #11	AGXT2 (ENSLAFG00000012063) #12	PRLR (ENSLAFG00000004043) #13	SPEF2 (ENSLAFG00000012912) #14	IL7R (ENSLAFG00000012936)	CAPSL (ENSLAFG00000025609) #15	UGT3A2 (ENSLAFG00000000415) #16	LMBRD2 (ENSLAFG00000014219) #17	SKP2 (ENSLAFG00000005374) #18	NADK2 (ENSLAFG00000005379) #19	RANBP3L (ENSLAFG00000015810) #20	SLC1A3 (ENSLAFG00000014149) #21	NIPBL (ENSLAFG00000013762) #22	ENSLAFG00000007588 #23	ENSLAFG00000029995 #23	ENSLAFG00000020573 #23	NUP155 (ENSLAFG00000012454) #24	WDR70 (ENSLAFG00000012469) #25	GDNF (ENSLAFG00000012711) #26	EGFLAM (ENSLAFG00000009049) #27	LIFR (ENSLAFG00000009058) #28	OSMR (ENSLAFG00000004288) #29	RICTOR (ENSLAFG00000004289) #30	FYB1 (ENSLAFG00000017371) #31	C9 (ENSLAFG00000023078) #32	DAB2 (ENSLAFG00000014524) #33	PTGER4 (ENSLAFG00000017781) #35	TTC33 (ENSLAFG00000003139) #36
Hyrax	MODERN SPECIES	4735																NIPBL (ENSPCAG00000007497) #22
Tenrec	MODERN SPECIES	5609																NIPBL (ENSETEG00000005501) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00940000172494	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00940000172494	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
koala	MODERN SPECIES	3	RAI14 (ENSPCIG00000022793) #7	ENSPCIG00000022785 #8	RAD1 (ENSPCIG00000022782) #9	BRIX1 (ENSPCIG00000022778) #10	DNAJC21 (ENSPCIG00000022775) #11	AGXT2 (ENSPCIG00000022770) #12	PRLR (ENSPCIG00000022761) #13	SPEF2 (ENSPCIG00000019690) #14	IL7R (ENSPCIG00000035268)	CAPSL (ENSPCIG00000022825) #15	LMBRD2 (ENSPCIG00000021482) #17	SKP2 (ENSPCIG00000021477) #18	NADK2 (ENSPCIG00000021475) #19	RANBP3L (ENSPCIG00000021468) #20	SLC1A3 (ENSPCIG00000021466) #21	NIPBL (ENSPCIG00000021464) #22	CPLANE1 (ENSPCIG00000024977) #23	NUP155 (ENSPCIG00000024969) #24	WDR70 (ENSPCIG00000024967) #25	GDNF (ENSPCIG00000030881) #26	EGFLAM (ENSPCIG00000016479) #27	LIFR (ENSPCIG00000013315) #28	ENSPCIG00000020045 #29	RICTOR (ENSPCIG00000020043) #30	ENSPCIG00000023902	C9 (ENSPCIG00000023900) #32	DAB2 (ENSPCIG00000035421) #33	PTGER4 (ENSPCIG00000027624) #35	TTC33 (ENSPCIG00000032953) #36	PRKAA1 (ENSPCIG00000027626) #37	ENSPCIG00000028650
Common wonbat	MODERN SPECIES	1011															SLC1A3 (ENSVURG00010002538) #21	NIPBL (ENSVURG00010002474) #22	CPLANE1 (ENSVURG00010002432) #23	NUP155 (ENSVURG00010002353) #24	WDR70 (ENSVURG00010002327) #25	GDNF (ENSVURG00010002302) #26	ENSVURG00010002273	EGFLAM (ENSVURG00010002217) #27	LIFR (ENSVURG00010002185) #28	ENSVURG00010002082 #29	RICTOR (ENSVURG00010001908) #30	ENSVURG00010001851	C9 (ENSVURG00010001837) #32	DAB2 (ENSVURG00010001765) #33	PTGER4 (ENSVURG00010001714) #35	TTC33 (ENSVURG00010001701) #36	PRKAA1 (ENSVURG00010001645) #37
Wallaby	MODERN SPECIES	6977																NIPBL (ENSMEUG00000009553) #22
Tasmanian devil	MODERN SPECIES		RAI14 (ENSSHAG00000011411) #7	ENSSHAG00000011220 #8	RAD1 (ENSSHAG00000010886) #9	BRIX1 (ENSSHAG00000010794) #10	DNAJC21 (ENSSHAG00000010525) #11	AGXT2 (ENSSHAG00000009951) #12	PRLR (ENSSHAG00000008641) #13	SPEF2 (ENSSHAG00000012235) #14	ENSSHAG00000023077	CAPSL (ENSSHAG00000006055) #15	LMBRD2 (ENSSHAG00000005201) #17	SKP2 (ENSSHAG00000004377) #18	NADK2 (ENSSHAG00000002696) #19	ENSSHAG00000003678 #20	ENSSHAG00000018536 #21	NIPBL (ENSSHAG00000018047) #22	CPLANE1 (ENSSHAG00000017799) #23	NUP155 (ENSSHAG00000017643) #24	ENSSHAG00000029137 #25	GDNF (ENSSHAG00000017134) #26	EGFLAM (ENSSHAG00000014505) #27	LIFR (ENSSHAG00000014197) #28	ENSSHAG00000011872 #29	RICTOR (ENSSHAG00000011344) #30	FYB1 (ENSSHAG00000009968) #31	C9 (ENSSHAG00000008614) #32	DAB2 (ENSSHAG00000007913) #33	ENSSHAG00000002243	ENSSHAG00000028478	PTGER4 (ENSSHAG00000028137) #35	ENSSHAG00000014498 #36
Opossum	MODERN SPECIES	2	AGXT2 (ENSMODG00000020379) #12	PRLR (ENSMODG00000020376) #13	ENSMODG00000050729	ENSMODG00000020372	ENSMODG00000051326	SPEF2 (ENSMODG00000020370) #14	ENSMODG00000027783	ENSMODG00000020367	CAPSL (ENSMODG00000020365) #15	LMBRD2 (ENSMODG00000020363) #17	SKP2 (ENSMODG00000020361) #18	NADK2 (ENSMODG00000020357) #19	ENSMODG00000020355 #20	SLC1A3 (ENSMODG00000020352) #21	ENSMODG00000029719	NIPBL (ENSMODG00000020351) #22	CPLANE1 (ENSMODG00000020345) #23	NUP155 (ENSMODG00000020340) #24	ENSMODG00000039622	WDR70 (ENSMODG00000020335) #25	GDNF (ENSMODG00000020332) #26	EGFLAM (ENSMODG00000020329) #27	LIFR (ENSMODG00000020327) #28	ENSMODG00000050317	ENSMODG00000020318 #29	RICTOR (ENSMODG00000020315) #30	FYB1 (ENSMODG00000020313) #31	ENSMODG00000020311	C9 (ENSMODG00000020310) #32	DAB2 (ENSMODG00000020308) #33	ENSMODG00000050821
Platypus	MODERN SPECIES	14	OGDHL (ENSOANG00000013228)	ENSOANG00000036132	PARG (ENSOANG00000050266)	ENSOANG00000050738	NCOA4 (ENSOANG00000005770)	ENSOANG00000003078	ENSOANG00000007492	ENSOANG00000007005	ENSOANG00000012987	ENSOANG00000037872	ENSOANG00000021407	ADIRF (ENSOANG00000022097)	ENSOANG00000046229	ENSOANG00000005822	SLC1A3 (ENSOANG00000028968) #21	NIPBL (ENSOANG00000009233) #22	CPLANE1 (ENSOANG00000009236) #23	NUP155 (ENSOANG00000011539) #24	WDR70 (ENSOANG00000044568) #25	GDNF (ENSOANG00000005353) #26	EGFLAM (ENSOANG00000051348) #27	LIFR (ENSOANG00000011785) #28	ENSOANG00000010210 #29	RICTOR (ENSOANG00000010208) #30	ENSOANG00000047702 #32	DAB2 (ENSOANG00000010205) #33	PTGER4 (ENSOANG00000000341) #35	TTC33 (ENSOANG00000047394) #36	RPL37 (ENSOANG00000004863)	PRKAA1 (ENSOANG00000004087) #37	C7 (ENSOANG00000030433)
Sauria	ANCESTRAL SPECIES	5	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000156466 #15	ENSGT00940000161263.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00950000185139	ENSGT01000000216120	ENSGT00940000160908	ENSGT00940000160769	ENSGT00940000154708	ENSGT00390000011517.a.b	ENSGT00940000157775	ENSGT00390000016597	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Emydidae	ANCESTRAL SPECIES	7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125.a #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00390000016597	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00940000172494	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Three-toed box turtle	MODERN SPECIES	29	BRIX1 (ENSTMTG00000001478) #10	DNAJC21 (ENSTMTG00000001487) #11	ENSTMTG00000001499 #12	PRLR (ENSTMTG00000001518) #13	ENSTMTG00000001530	SPEF2 (ENSTMTG00000001560) #14	IL7R (ENSTMTG00000001642)	CAPSL (ENSTMTG00000001655) #15	ENSTMTG00000001665 #16	ENSTMTG00000001673 #16	LMBRD2 (ENSTMTG00000001685) #17	SKP2 (ENSTMTG00000001703) #18	NADK2 (ENSTMTG00000001715) #19	ENSTMTG00000001724	SLC1A3 (ENSTMTG00000001735) #21	NIPBL (ENSTMTG00000001776) #22	CPLANE1 (ENSTMTG00000001844) #23	NUP155 (ENSTMTG00000001858) #24	WDR70 (ENSTMTG00000001880) #25	GDNF (ENSTMTG00000001896) #26	EGFLAM (ENSTMTG00000001929) #27	LIFR (ENSTMTG00000002099) #28	OSMR (ENSTMTG00000002119) #29	RICTOR (ENSTMTG00000002135) #30	ENSTMTG00000002158	C9 (ENSTMTG00000002167) #32	DAB2 (ENSTMTG00000002178) #33	ENSTMTG00000002200	ENSTMTG00000002204	PTGER4 (ENSTMTG00000002211) #35	TTC33 (ENSTMTG00000002216) #36
painted turtle	MODERN SPECIES	710	ENSCPBG00000007443	EGFLAM (ENSCPBG00000007423) #27	LIFR (ENSCPBG00000007396) #28	OSMR (ENSCPBG00000007369) #29	RICTOR (ENSCPBG00000007344) #30	ENSCPBG00000007312	C9 (ENSCPBG00000007304) #32	DAB2 (ENSCPBG00000007273) #33	PTGER4 (ENSCPBG00000007245) #35	TTC33 (ENSCPBG00000007242) #36	PRKAA1 (ENSCPBG00000007237) #37	RPL37 (ENSCPBG00000007225)	C7 (ENSCPBG00000007210)	C6 (ENSCPBG00000006942)	GDNF (ENSCPBG00000006880) #26	NIPBL (ENSCPBG00000006177) #22	CPLANE1 (ENSCPBG00000005940) #23	NUP155 (ENSCPBG00000004106) #24	ENSCPBG00000003814
Testudinidae	ANCESTRAL SPECIES	30	ENSGT00940000156466 #15	ENSGT00940000161263.b #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00950000185139	ENSGT01000000216120	ENSGT00940000160908	ENSGT00940000160769	ENSGT00940000154708	ENSGT00390000011517.a.b	ENSGT00940000157775	ENSGT00390000016597	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005011318 #12	RAD1 (ENSGEVG00005011102) #9	BRIX1 (ENSGEVG00005011175) #10	DNAJC21 (ENSGEVG00005010876) #11	ENSGEVG00005009875 #12	PRLR (ENSGEVG00005009270) #13	ENSGEVG00005009158 #14	IL7R (ENSGEVG00005013923)	CAPSL (ENSGEVG00005013857) #15	UGT3A2 (ENSGEVG00005013602) #16	LMBRD2 (ENSGEVG00005013491) #17	SKP2 (ENSGEVG00005013431) #18	NADK2 (ENSGEVG00005013393) #19	RANBP3L (ENSGEVG00005013355) #20	SLC1A3 (ENSGEVG00005013105) #21	NIPBL (ENSGEVG00005012976) #22	CPLANE1 (ENSGEVG00005012750) #23	NUP155 (ENSGEVG00005012627) #24	WDR70 (ENSGEVG00005012562) #25	GDNF (ENSGEVG00005012538) #26	ENSGEVG00005012431	EGFLAM (ENSGEVG00005011766) #27	LIFR (ENSGEVG00005011535) #28	OSMR (ENSGEVG00005011395) #29	RICTOR (ENSGEVG00005011267) #30	FYB1 (ENSGEVG00005010813) #31	C9 (ENSGEVG00005010735) #32	DAB2 (ENSGEVG00005010672) #33	PTGER4 (ENSGEVG00005010640) #35	TTC33 (ENSGEVG00005010612) #36	PRKAA1 (ENSGEVG00005010575) #37
Chinese turtle	MODERN SPECIES	2253															ENSPSIG00000011609 #21	NIPBL (ENSPSIG00000012077) #22	ENSPSIG00000016464 #23	ENSPSIG00000016981 #23	NUP155 (ENSPSIG00000017393) #24	WDR70 (ENSPSIG00000007222) #25	GDNF (ENSPSIG00000007480) #26	EGFLAM (ENSPSIG00000007491) #27	LIFR (ENSPSIG00000008188) #28	OSMR (ENSPSIG00000009990) #29	RICTOR (ENSPSIG00000010439) #30	FYB1 (ENSPSIG00000012110) #31	C9 (ENSPSIG00000012749) #32	DAB2 (ENSPSIG00000013114) #33	ENSPSIG00000001605	PTGER4 (ENSPSIG00000013137) #35	TTC33 (ENSPSIG00000013178) #36
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Australian saltwater crocodile	MODERN SPECIES	29	RAD1 (ENSCPRG00005015678) #9	BRIX1 (ENSCPRG00005015682) #10	DNAJC21 (ENSCPRG00005015687) #11	AGXT2 (ENSCPRG00005015693) #12	ENSCPRG00005015698 #13	ENSCPRG00005015703 #13	ENSCPRG00005015718 #13	SPEF2 (ENSCPRG00005015730) #14	IL7R (ENSCPRG00005015757)	CAPSL (ENSCPRG00005015759) #15	LMBRD2 (ENSCPRG00005015765) #17	SKP2 (ENSCPRG00005015794) #18	NADK2 (ENSCPRG00005015799) #19	ENSCPRG00005015819	SLC1A3 (ENSCPRG00005015823) #21	NIPBL (ENSCPRG00005015833) #22	CPLANE1 (ENSCPRG00005015879) #23	NUP155 (ENSCPRG00005015889) #24	WDR70 (ENSCPRG00005015897) #25	ENSCPRG00005015903 #26	ENSCPRG00005015904 #26	EGFLAM (ENSCPRG00005015907) #27	LIFR (ENSCPRG00005015912) #28	OSMR (ENSCPRG00005015920) #29	RICTOR (ENSCPRG00005015925) #30	ENSCPRG00005015928	C9 (ENSCPRG00005015929) #32	DAB2 (ENSCPRG00005015933) #33	PTGER4 (ENSCPRG00005015941) #35	ENSCPRG00005015942	PRKAA1 (ENSCPRG00005015945) #37
Aves	ANCESTRAL SPECIES	4	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
African ostrich	MODERN SPECIES	811	ENSSCUG00000013271	RAI14 (ENSSCUG00000013274) #7	RAD1 (ENSSCUG00000013280) #9	BRIX1 (ENSSCUG00000013281) #10	DNAJC21 (ENSSCUG00000013283) #11	AGXT2 (ENSSCUG00000013286) #12	PRLR (ENSSCUG00000013290) #13	SPEF2 (ENSSCUG00000013294) #14	IL7R (ENSSCUG00000013300)	CAPSL (ENSSCUG00000013301) #15	LMBRD2 (ENSSCUG00000013304) #17	SKP2 (ENSSCUG00000013308) #18	NADK2 (ENSSCUG00000013309) #19	RANBP3L (ENSSCUG00000013314) #20	SLC1A3 (ENSSCUG00000013319) #21	NIPBL (ENSSCUG00000013323) #22	CPLANE1 (ENSSCUG00000013340) #23	NUP155 (ENSSCUG00000013381) #24	WDR70 (ENSSCUG00000013431) #25	GDNF (ENSSCUG00000013433) #26	EGFLAM (ENSSCUG00000013437) #27	LIFR (ENSSCUG00000013446) #28	OSMR (ENSSCUG00000013454) #29	RICTOR (ENSSCUG00000013466) #30	FYB1 (ENSSCUG00000013473) #31	ENSSCUG00000013479	C9 (ENSSCUG00000013485) #32	DAB2 (ENSSCUG00000013492) #33	PTGER4 (ENSSCUG00000013504) #35	TTC33 (ENSSCUG00000013508) #36	PRKAA1 (ENSSCUG00000013512) #37
Neognathae	ANCESTRAL SPECIES	12	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Neognathae_b	DUPLICATION
Neognathae_b	DUPLICATION
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37	ENSGT00390000005254.j
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37	ENSGT00390000005254.j
Golden eagle	MODERN SPECIES	91	RAI14 (ENSACCG00020015874) #7	RAD1 (ENSACCG00020015835) #9	BRIX1 (ENSACCG00020015817) #10	DNAJC21 (ENSACCG00020015800) #11	AGXT2 (ENSACCG00020015769) #12	PRLR (ENSACCG00020015663) #13	ENSACCG00020015496	SPEF2 (ENSACCG00020015485) #14	IL7R (ENSACCG00020015456)	CAPSL (ENSACCG00020015437) #15	LMBRD2 (ENSACCG00020015420) #17	SKP2 (ENSACCG00020015380) #18	NADK2 (ENSACCG00020015342) #19	RANBP3L (ENSACCG00020015318) #20	SLC1A3 (ENSACCG00020015296) #21	NIPBL (ENSACCG00020015233) #22	CPLANE1 (ENSACCG00020015149) #23	NUP155 (ENSACCG00020015100) #24	WDR70 (ENSACCG00020015041) #25	GDNF (ENSACCG00020015016) #26	EGFLAM (ENSACCG00020014991) #27	LIFR (ENSACCG00020014953) #28	OSMR (ENSACCG00020014918) #29	RICTOR (ENSACCG00020014567) #30	FYB1 (ENSACCG00020014242) #31	DAB2 (ENSACCG00020014117) #33	PTGER4 (ENSACCG00020014091) #35	TTC33 (ENSACCG00020014076) #36	ENSACCG00020014065	PRKAA1 (ENSACCG00020014041) #37	RPL37 (ENSACCG00020014013)
Kakapo	MODERN SPECIES	19	C1QTNF3 (ENSSHBG00005005019)	RAI14 (ENSSHBG00005005011) #7	RAD1 (ENSSHBG00005005001) #9	BRIX1 (ENSSHBG00005004993) #10	DNAJC21 (ENSSHBG00005004991) #11	AGXT2 (ENSSHBG00005004979) #12	PRLR (ENSSHBG00005004971) #13	SPEF2 (ENSSHBG00005004953) #14	IL7R (ENSSHBG00005004937)	CAPSL (ENSSHBG00005000471) #15	LMBRD2 (ENSSHBG00005000467) #17	SKP2 (ENSSHBG00005000461) #18	NADK2 (ENSSHBG00005000456) #19	RANBP3L (ENSSHBG00005000453) #20	SLC1A3 (ENSSHBG00005009612) #21	ENSSHBG00005009561 #22	ENSSHBG00005009517	CPLANE1 (ENSSHBG00005009463) #23	NUP155 (ENSSHBG00005009278) #24	WDR70 (ENSSHBG00005009223) #25	GDNF (ENSSHBG00005009214) #26	EGFLAM (ENSSHBG00005009055) #27	LIFR (ENSSHBG00005009016) #28	ENSSHBG00005009009 #29	RICTOR (ENSSHBG00005004989) #30	FYB1 (ENSSHBG00005004815) #31	C9 (ENSSHBG00005004807) #32	DAB2 (ENSSHBG00005004798) #33	PTGER4 (ENSSHBG00005004794) #35	TTC33 (ENSSHBG00005004791) #36	ENSSHBG00005004786 #37
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37	ENSGT00390000005254.j
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37	ENSGT00390000005254.j
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37	ENSGT00390000005254.j
Medium ground finch	MODERN SPECIES	104		RAI14 (ENSGFOG00000008444) #7	RAD1 (ENSGFOG00000008469) #9	BRIX1 (ENSGFOG00000008488) #10	ENSGFOG00000008816 #11	ENSGFOG00000008819 #12	PRLR (ENSGFOG00000008825) #13	SPEF2 (ENSGFOG00000008842) #14	IL7R (ENSGFOG00000008896)	CAPSL (ENSGFOG00000008902) #15	LMBRD2 (ENSGFOG00000008909) #17	SKP2 (ENSGFOG00000008924) #18	NADK2 (ENSGFOG00000008947) #19	RANBP3L (ENSGFOG00000008957) #20	SLC1A3 (ENSGFOG00000008971) #21	ENSGFOG00000008987 #22	NUP155 (ENSGFOG00000009045) #24	WDR70 (ENSGFOG00000009064) #25	GDNF (ENSGFOG00000009075) #26	EGFLAM (ENSGFOG00000009089) #27	ENSGFOG00000009165	LIFR (ENSGFOG00000009171) #28	RICTOR (ENSGFOG00000009180) #30	FYB1 (ENSGFOG00000009203) #31	C9 (ENSGFOG00000009218) #32	DAB2 (ENSGFOG00000009237) #33	PTGER4 (ENSGFOG00000009248) #35	TTC33 (ENSGFOG00000009250) #36	ENSGFOG00000009264 #37	ENSGFOG00000009300	C7 (ENSGFOG00000009307)
Passeroidea	ANCESTRAL SPECIES	27	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.e.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00950000186371	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.a #37
Zebra finch	MODERN SPECIES	104	C1QTNF3 (ENSTGUG00000001951)	RAI14 (ENSTGUG00000001957) #7	ENSTGUG00000019204	RAD1 (ENSTGUG00000001960) #9	BRIX1 (ENSTGUG00000001961) #10	DNAJC21 (ENSTGUG00000001971) #11	AGXT2 (ENSTGUG00000001974) #12	SPEF2 (ENSTGUG00000001981) #14	CAPSL (ENSTGUG00000002005) #15	IL7R (ENSTGUG00000001996)	LMBRD2 (ENSTGUG00000002015) #17	SKP2 (ENSTGUG00000002027) #18	NADK2 (ENSTGUG00000002030) #19	RANBP3L (ENSTGUG00000002031) #20	SLC1A3 (ENSTGUG00000002032) #21	NIPBL (ENSTGUG00000002047) #22	ENSTGUG00000002053 #23	CPLANE1 (ENSTGUG00000002059) #23	WDR70 (ENSTGUG00000002097) #25	GDNF (ENSTGUG00000019278) #26	EGFLAM (ENSTGUG00000002114) #27	ENSTGUG00000025487	ENSTGUG00000019842	LIFR (ENSTGUG00000002116) #28	OSMR (ENSTGUG00000002125) #29	RICTOR (ENSTGUG00000002126) #30	FYB1 (ENSTGUG00000002137) #31	C9 (ENSTGUG00000002149) #32	DAB2 (ENSTGUG00000002156) #33	PTGER4 (ENSTGUG00000002168) #35	TTC33 (ENSTGUG00000026129) #36
Common canary	MODERN SPECIES	35	NMRK1 (ENSSCAG00000007754)	CARNMT1 (ENSSCAG00000007762)	TRPM6 (ENSSCAG00000007772)	RORB (ENSSCAG00000007814)	GDNF (ENSSCAG00000007822) #26	ENSSCAG00000007827	PRLR (ENSSCAG00000007837) #13	SPEF2 (ENSSCAG00000007859) #14	IL7R (ENSSCAG00000007875)	CAPSL (ENSSCAG00000007884) #15	LMBRD2 (ENSSCAG00000007891) #17	SKP2 (ENSSCAG00000007900) #18	NADK2 (ENSSCAG00000007906) #19	RANBP3L (ENSSCAG00000007911) #20	SLC1A3 (ENSSCAG00000007944) #21	ENSSCAG00000008090 #22	CPLANE1 (ENSSCAG00000008128) #23	NUP155 (ENSSCAG00000008153) #24	ENSSCAG00000008201	EGFLAM (ENSSCAG00000008254) #27	ENSSCAG00000008270	ENSSCAG00000008274	LIFR (ENSSCAG00000008283) #28	OSMR (ENSSCAG00000008316) #29	RICTOR (ENSSCAG00000008344) #30	ENSSCAG00000008354	C9 (ENSSCAG00000008362) #32	DAB2 (ENSSCAG00000008373) #33	PTGER4 (ENSSCAG00000008380) #35	TTC33 (ENSSCAG00000008384) #36	ENSSCAG00000008395 #37
Flycatcher	MODERN SPECIES	561	AMACR (ENSFALG00000002116)	C1QTNF3 (ENSFALG00000025748)	RAI14 (ENSFALG00000002112) #7	RAD1 (ENSFALG00000002107) #9	BRIX1 (ENSFALG00000002106) #10	AGXT2 (ENSFALG00000002103) #12	PRLR (ENSFALG00000002096) #13	SPEF2 (ENSFALG00000002091) #14	IL7R (ENSFALG00000002085)	CAPSL (ENSFALG00000002083) #15	LMBRD2 (ENSFALG00000002077) #17	SKP2 (ENSFALG00000002075) #18	NADK2 (ENSFALG00000002067) #19	RANBP3L (ENSFALG00000028032) #20	SLC1A3 (ENSFALG00000002060) #21	NIPBL (ENSFALG00000002058) #22	ENSFALG00000026945 #23	ENSFALG00000002055 #23	NUP155 (ENSFALG00000002048) #24	WDR70 (ENSFALG00000002047) #25	GDNF (ENSFALG00000002046) #26	ENSFALG00000025627	EGFLAM (ENSFALG00000002044) #27	LIFR (ENSFALG00000002041) #28	OSMR (ENSFALG00000002039) #29	RICTOR (ENSFALG00000002034) #30	FYB1 (ENSFALG00000002027) #31	C9 (ENSFALG00000002022) #32	DAB2 (ENSFALG00000002020) #33	PTGER4 (ENSFALG00000002017) #35	TTC33 (ENSFALG00000002015) #36
Great tit	MODERN SPECIES	642	C1QTNF3 (ENSPMJG00000015774)	RAI14 (ENSPMJG00000015775) #7	RAD1 (ENSPMJG00000015776) #9	BRIX1 (ENSPMJG00000015777) #10	DNAJC21 (ENSPMJG00000015794) #11	AGXT2 (ENSPMJG00000015795) #12	PRLR (ENSPMJG00000015796) #13	SPEF2 (ENSPMJG00000015799) #14	IL7R (ENSPMJG00000015800)	CAPSL (ENSPMJG00000015801) #15	LMBRD2 (ENSPMJG00000015802) #17	SKP2 (ENSPMJG00000015803) #18	NADK2 (ENSPMJG00000015804) #19	RANBP3L (ENSPMJG00000015805) #20	SLC1A3 (ENSPMJG00000015806) #21	NIPBL (ENSPMJG00000015808) #22	CPLANE1 (ENSPMJG00000015809) #23	NUP155 (ENSPMJG00000015810) #24	WDR70 (ENSPMJG00000015811) #25	GDNF (ENSPMJG00000015812) #26	EGFLAM (ENSPMJG00000015813) #27	LIFR (ENSPMJG00000015814) #28	OSMR (ENSPMJG00000015817) #29	RICTOR (ENSPMJG00000015818) #30	FYB1 (ENSPMJG00000015823) #31	C9 (ENSPMJG00000015833) #32	DAB2 (ENSPMJG00000015837) #33	PTGER4 (ENSPMJG00000015844) #35	TTC33 (ENSPMJG00000015845) #36	PRKAA1 (ENSPMJG00000015846) #37	RPL37 (ENSPMJG00000015847)
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Common canary	MODERN SPECIES	119																ENSSCAG00000014801 #22
Medium ground finch	MODERN SPECIES	454																ENSGFOG00000008477 #22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT00390000010427.c.e.b #22
Kakapo	MODERN SPECIES	55																ENSSHBG00005009591 #22	ENSSHBG00005009644	ENSSHBG00005009662	ENSSHBG00005009671	ENSSHBG00005009679	ENSSHBG00005009683	ENSSHBG00005009688	ENSSHBG00005009692	ENSSHBG00005009705	ENSSHBG00005009719	ENSSHBG00005009729	ENSSHBG00005009740	ENSSHBG00005009848	ENSSHBG00005011410	ENSSHBG00005011427	ENSSHBG00005011438
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00390000010427.c.f #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00390000010427.c.f #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000010427.c.f #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00390000010427.c.f #22
Medium ground finch	MODERN SPECIES	759																ENSGFOG00000007397 #22
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Anatidae	ANCESTRAL SPECIES	20	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Duck	MODERN SPECIES	4281	RAI14 (ENSAPLG00000006444) #7	RAD1 (ENSAPLG00000006565) #9	BRIX1 (ENSAPLG00000006647) #10	DNAJC21 (ENSAPLG00000006757) #11	AGXT2 (ENSAPLG00000006807) #12	PRLR (ENSAPLG00000006942) #13	SPEF2 (ENSAPLG00000007062) #14	ENSAPLG00000022326	IL7R (ENSAPLG00000007308)	CAPSL (ENSAPLG00000007315) #15	LMBRD2 (ENSAPLG00000007368) #17	SKP2 (ENSAPLG00000007705) #18	NADK2 (ENSAPLG00000007886) #19	RANBP3L (ENSAPLG00000008111) #20	SLC1A3 (ENSAPLG00000007513) #21	NIPBL (ENSAPLG00000008108) #22	CPLANE1 (ENSAPLG00000008819) #23	NUP155 (ENSAPLG00000008857) #24	WDR70 (ENSAPLG00000010164) #25	GDNF (ENSAPLG00000020330) #26	EGFLAM (ENSAPLG00000010255) #27	LIFR (ENSAPLG00000007351) #28	OSMR (ENSAPLG00000008272) #29	RICTOR (ENSAPLG00000008632) #30	FYB1 (ENSAPLG00000008903) #31	C9 (ENSAPLG00000008988) #32	DAB2 (ENSAPLG00000009262) #33	PIK3C3 (ENSAPLG00000012759)	RIT2 (ENSAPLG00000027064)	SYT4 (ENSAPLG00000011860)	SETBP1 (ENSAPLG00000017129)
Pink-footed goose	MODERN SPECIES	131																NIPBL (ENSABRG00000000103) #22	CPLANE1 (ENSABRG00000002600) #23	NUP155 (ENSABRG00000002985) #24	WDR70 (ENSABRG00000005828) #25	GDNF (ENSABRG00000005974) #26	EGFLAM (ENSABRG00000006013) #27	LIFR (ENSABRG00000006039) #28	OSMR (ENSABRG00000006075) #29	ENSABRG00000006094 #30	FYB1 (ENSABRG00000006127) #31	C9 (ENSABRG00000006141) #32	DAB2 (ENSABRG00000006154) #33	PTGER4 (ENSABRG00000006211) #35	ENSABRG00000006216	PRKAA1 (ENSABRG00000006221) #37	RPL37 (ENSABRG00000006230)
Phasianidae	DUPLICATION
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097.u #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.g.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851.c.a #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.c #37	ENSGT00390000005254.j	ENSGT00940000156804
Japanese quail	MODERN SPECIES	699	C1QTNF3 (ENSCJPG00005006593)	RAI14 (ENSCJPG00005006594) #7	RAD1 (ENSCJPG00005006596) #9	BRIX1 (ENSCJPG00005006597) #10	DNAJC21 (ENSCJPG00005006599) #11	AGXT2 (ENSCJPG00005006600) #12	PRLR (ENSCJPG00005006601) #13	SPEF2 (ENSCJPG00005006619) #14	IL7R (ENSCJPG00005006697)	CAPSL (ENSCJPG00005006698) #15	LMBRD2 (ENSCJPG00005006699) #17	SKP2 (ENSCJPG00005006700) #18	NADK2 (ENSCJPG00005006702) #19	RANBP3L (ENSCJPG00005006703) #20	SLC1A3 (ENSCJPG00005006721) #21	NIPBL (ENSCJPG00005006734) #22	CPLANE1 (ENSCJPG00005006920) #23	NUP155 (ENSCJPG00005006933) #24	WDR70 (ENSCJPG00005007178) #25	GDNF (ENSCJPG00005007181) #26	EGFLAM (ENSCJPG00005007208) #27	LIFR (ENSCJPG00005007224) #28	ENSCJPG00005007226 #29	RICTOR (ENSCJPG00005007227) #30	FYB1 (ENSCJPG00005007860) #31	ENSCJPG00005007870 #33	ENSCJPG00005007873 #33	PTGER4 (ENSCJPG00005007909) #35	TTC33 (ENSCJPG00005007920) #36	PRKAA1 (ENSCJPG00005007921) #37	RPL37 (ENSCJPG00005007923)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097.u #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c.g.a #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851.c.a #29	ENSGT00940000160851.d #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865.c #37	ENSGT00390000005254.j
Chicken	MODERN SPECIES	131	C1QTNF3 (ENSGALG00010013207)	RAI14 (ENSGALG00010013214) #7	RAD1 (ENSGALG00010013238) #9	BRIX1 (ENSGALG00010013256) #10	DNAJC21 (ENSGALG00010013264) #11	AGXT2 (ENSGALG00010013296) #12	PRLR (ENSGALG00010014796) #13	SPEF2 (ENSGALG00010014805) #14	IL7R (ENSGALG00010012726)	CAPSL (ENSGALG00010012750) #15	LMBRD2 (ENSGALG00010013514) #17	SKP2 (ENSGALG00010013533) #18	NADK2 (ENSGALG00010015616) #19	RANBP3L (ENSGALG00010013580) #20	SLC1A3 (ENSGALG00010013632) #21	ENSGALG00010013746 #22	CPLANE1 (ENSGALG00010013777) #23	NUP155 (ENSGALG00010012803) #24	WDR70 (ENSGALG00010012861) #25	GDNF (ENSGALG00010012878) #26	EGFLAM (ENSGALG00010012913) #27	LIFR (ENSGALG00010013329) #28	OSMR (ENSGALG00010013344) #29	RICTOR (ENSGALG00010013357) #30	FYB1 (ENSGALG00010013396) #31	DAB2 (ENSGALG00010013409) #33	PTGER4 (ENSGALG00010014350) #35	TTC33 (ENSGALG00010014371) #36	PRKAA1 (ENSGALG00010014397) #37	RPL37 (ENSGALG00010013438)	C7 (ENSGALG00010012427)
Turkey	MODERN SPECIES	1299	C1QTNF3 (ENSMGAG00000021284)	RAI14 (ENSMGAG00000003087) #7	RAD1 (ENSMGAG00000003190) #9	BRIX1 (ENSMGAG00000018680) #10	DNAJC21 (ENSMGAG00000003141) #11	AGXT2 (ENSMGAG00000003103) #12	PRLR (ENSMGAG00000003018) #13	RANBP3L (ENSMGAG00000020450) #20	ENSMGAG00000004184 #18	ENSMGAG00000004189 #19	LMBRD2 (ENSMGAG00000004137) #17	ENSMGAG00000021013 #15	ENSMGAG00000008918	ENSMGAG00000004715 #14	SLC1A3 (ENSMGAG00000020921) #21	ENSMGAG00000019958 #22	ENSMGAG00000013606 #22	CPLANE1 (ENSMGAG00000003368) #23	NUP155 (ENSMGAG00000003380) #24	WDR70 (ENSMGAG00000003362) #25	GDNF (ENSMGAG00000003353) #26	EGFLAM (ENSMGAG00000019488) #27	LIFR (ENSMGAG00000005765) #28	ENSMGAG00000017695 #29	ENSMGAG00000003455 #29	RICTOR (ENSMGAG00000003410) #30	ENSMGAG00000018006	DAB2 (ENSMGAG00000003483) #33	PLCXD3 (ENSMGAG00000003582)	ENSMGAG00000018285 #37	ENSMGAG00000018168
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000010427.c.g.b #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00390000010427.c.g.b #22
Chicken	MODERN SPECIES	130	ENSGALG00010012272	ENSGALG00010013588	ENSGALG00010012282	ENSGALG00010012286	ENSGALG00010012294	ENSGALG00010012306	ENSGALG00010012316	SMAD7B (ENSGALG00010012323)	ENSGALG00010012332	ENSGALG00010012336	ENSGALG00010012342	ENSGALG00010012348	ENSGALG00010012357	ENSGALG00010012370	ENSGALG00010012380	ENSGALG00010012393 #22	ENSGALG00010012437	ENSGALG00010012459	ENSGALG00010012463	ENSGALG00010012464	ENSGALG00010012467	ENSGALG00010012519	ENSGALG00010012547	ENSGALG00010012553	ENSGALG00010012604	ENSGALG00010012156	ENSGALG00010012626	ENSGALG00010012676	ENSGALG00010012684	ENSGALG00010012721	ENSGALG00010012733
Turkey	MODERN SPECIES	1299	ENSMGAG00000005390	ENSMGAG00000018168	ENSMGAG00000018285 #37	PLCXD3 (ENSMGAG00000003582)	DAB2 (ENSMGAG00000003483) #33	ENSMGAG00000018006	RICTOR (ENSMGAG00000003410) #30	ENSMGAG00000003455 #29	ENSMGAG00000017695 #29	LIFR (ENSMGAG00000005765) #28	EGFLAM (ENSMGAG00000019488) #27	GDNF (ENSMGAG00000003353) #26	WDR70 (ENSMGAG00000003362) #25	NUP155 (ENSMGAG00000003380) #24	CPLANE1 (ENSMGAG00000003368) #23	ENSMGAG00000013606 #22	ENSMGAG00000019958 #22	SLC1A3 (ENSMGAG00000020921) #21	ENSMGAG00000004715 #14	ENSMGAG00000008918	ENSMGAG00000021013 #15	LMBRD2 (ENSMGAG00000004137) #17	ENSMGAG00000004189 #19	ENSMGAG00000004184 #18	RANBP3L (ENSMGAG00000020450) #20	PRLR (ENSMGAG00000003018) #13	AGXT2 (ENSMGAG00000003103) #12	DNAJC21 (ENSMGAG00000003141) #11	BRIX1 (ENSMGAG00000018680) #10	RAD1 (ENSMGAG00000003190) #9	RAI14 (ENSMGAG00000003087) #7
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000010427.c.h #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00390000010427.c.h #22
Turkey	MODERN SPECIES	802																ENSMGAG00000019894 #22
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1665															ENSSPUG00000006697 #22	ENSSPUG00000006768 #22	ENSSPUG00000006779 #23	ENSSPUG00000006806	ENSSPUG00000006821 #23	NUP155 (ENSSPUG00000006857) #24	WDR70 (ENSSPUG00000007003) #25	GDNF (ENSSPUG00000007019) #26	EGFLAM (ENSSPUG00000007043) #27	LIFR (ENSSPUG00000007112) #28	RICTOR (ENSSPUG00000007143) #30	ENSSPUG00000007202 #31	ENSSPUG00000007217	C9 (ENSSPUG00000007256) #32	DAB2 (ENSSPUG00000007413) #33
tuatara	MODERN SPECIES	1665																ENSSPUG00000006697 #22	ENSSPUG00000006768 #22	ENSSPUG00000006779 #23	ENSSPUG00000006806	ENSSPUG00000006821 #23	NUP155 (ENSSPUG00000006857) #24	WDR70 (ENSSPUG00000007003) #25	GDNF (ENSSPUG00000007019) #26	EGFLAM (ENSSPUG00000007043) #27	LIFR (ENSSPUG00000007112) #28	RICTOR (ENSSPUG00000007143) #30	ENSSPUG00000007202 #31	ENSSPUG00000007217	C9 (ENSSPUG00000007256) #32	DAB2 (ENSSPUG00000007413) #33
Episquamata	ANCESTRAL SPECIES	6	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Laterata	ANCESTRAL SPECIES	8	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j	ENSGT00940000156804
Common wall lizard	MODERN SPECIES	2	TTC23L (ENSPMRG00000011172) #8	RAD1 (ENSPMRG00000011178) #9	BRIX1 (ENSPMRG00000011180) #10	DNAJC21 (ENSPMRG00000011189) #11	AGXT2 (ENSPMRG00000011192) #12	ENSPMRG00000011195	PRLR (ENSPMRG00000011201) #13	SPEF2 (ENSPMRG00000011228) #14	IL7R (ENSPMRG00000011367)	ENSPMRG00000011368 #18	NADK2 (ENSPMRG00000011370) #19	RANBP3L (ENSPMRG00000011380) #20	SLC1A3 (ENSPMRG00000011395) #21	ENSPMRG00000011399	ENSPMRG00000011401	NIPBL (ENSPMRG00000011413) #22	NUP155 (ENSPMRG00000016099) #24	WDR70 (ENSPMRG00000016116) #25	GDNF (ENSPMRG00000016124) #26	EGFLAM (ENSPMRG00000016146) #27	LIFR (ENSPMRG00000016207) #28	ENSPMRG00000016217	RICTOR (ENSPMRG00000016267) #30	FYB1 (ENSPMRG00000016583) #31	C9 (ENSPMRG00000016600) #32	DAB2 (ENSPMRG00000016609) #33	ENSPMRG00000016621	PTGER4 (ENSPMRG00000016625) #35	TTC33 (ENSPMRG00000016627) #36	PRKAA1 (ENSPMRG00000016630) #37	ENSPMRG00000016636
Argentine black and white tegu	MODERN SPECIES	10							SPEF2 (ENSSMRG00000017581) #14	CAPSL (ENSSMRG00000017627) #15	LMBRD2 (ENSSMRG00000017628) #17	SKP2 (ENSSMRG00000017629) #18	NADK2 (ENSSMRG00000017630) #19	RANBP3L (ENSSMRG00000017631) #20	SLC1A3 (ENSSMRG00000017633) #21	ENSSMRG00000017634	ENSSMRG00000017638	NIPBL (ENSSMRG00000017641) #22	CPLANE1 (ENSSMRG00000018857) #23	NUP155 (ENSSMRG00000018858) #24	ENSSMRG00000018859	WDR70 (ENSSMRG00000018860) #25	GDNF (ENSSMRG00000018861) #26	EGFLAM (ENSSMRG00000018862) #27	ENSSMRG00000018863	LIFR (ENSSMRG00000018864) #28	RICTOR (ENSSMRG00000018866) #30	FYB1 (ENSSMRG00000018868) #31	C9 (ENSSMRG00000018869) #32	DAB2 (ENSSMRG00000018870) #33	ENSSMRG00000018871	ENSSMRG00000018872	PTGER4 (ENSSMRG00000018875) #35
Toxicofera	ANCESTRAL SPECIES	18	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000007212	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777 #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254.j
Lizard	MODERN SPECIES	855	RAD1 (ENSACAG00000044938) #9	BRIX1 (ENSACAG00000008586) #10	DNAJC21 (ENSACAG00000021095) #11	AGXT2 (ENSACAG00000008668) #12	PRLR (ENSACAG00000008737) #13	ENSACAG00000044904	SPEF2 (ENSACAG00000008901) #14	IL7R (ENSACAG00000008906)	CAPSL (ENSACAG00000044424) #15	ENSACAG00000008989 #16	LMBRD2 (ENSACAG00000009051) #17	SKP2 (ENSACAG00000009107) #18	NADK2 (ENSACAG00000009164) #19	RANBP3L (ENSACAG00000009233) #20	SLC1A3 (ENSACAG00000009253) #21	NIPBL (ENSACAG00000009312) #22	CPLANE1 (ENSACAG00000024019) #23	NUP155 (ENSACAG00000024819) #24	ENSACAG00000029501	GDNF (ENSACAG00000009822) #26	WDR70 (ENSACAG00000009770) #25	EGFLAM (ENSACAG00000021140) #27	LIFR (ENSACAG00000009842) #28	OSMR (ENSACAG00000009942) #29	RICTOR (ENSACAG00000009960) #30
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	19	ENSGT00960000187050	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000155464 #21	ENSGT00390000010427.c.k #22	ENSGT00390000010427.c.l #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777.h #32	ENSGT00940000159777.g #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.s.b #36
Indian cobra	MODERN SPECIES	1	ENSNNAG00000013551	ENSNNAG00000013521 #8	RAD1 (ENSNNAG00000013504) #9	BRIX1 (ENSNNAG00000013476) #10	DNAJC21 (ENSNNAG00000013419) #11	AGXT2 (ENSNNAG00000013385) #12	ENSNNAG00000013356 #13	ENSNNAG00000013308 #13	SPEF2 (ENSNNAG00000012658) #14	CAPSL (ENSNNAG00000012589) #15	LMBRD2 (ENSNNAG00000012402) #17	SKP2 (ENSNNAG00000012337) #18	ENSNNAG00000012310	NADK2 (ENSNNAG00000012252) #19	SLC1A3 (ENSNNAG00000012211) #21	NIPBL (ENSNNAG00000012019) #22	NUP155 (ENSNNAG00000011706) #24	WDR70 (ENSNNAG00000011614) #25	GDNF (ENSNNAG00000011597) #26	EGFLAM (ENSNNAG00000011232) #27	LIFR (ENSNNAG00000011134) #28	RICTOR (ENSNNAG00000010929) #30	FYB1 (ENSNNAG00000010872) #31	ENSNNAG00000010001 #32	ENSNNAG00000009786 #32	DAB2 (ENSNNAG00000009585) #33	PTGER4 (ENSNNAG00000009560) #35	TTC33 (ENSNNAG00000009535) #36	PRKAA1 (ENSNNAG00000009513) #37	ENSNNAG00000009488	C7 (ENSNNAG00000009375)
Elapidae_a	ANCESTRAL SPECIES	24	ENSGT00940000157215	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000155464 #21	ENSGT00390000010427.c.k #22	ENSGT00390000010427.c.l #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777.g #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.s.b #36	ENSGT00390000017462.s.a #36
Acanthophiinae	ANCESTRAL SPECIES	24	ENSGT00940000157215	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000155464 #21	ENSGT00390000010427.c.k #22	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777.g #32	ENSGT00940000155567 #33	ENSGT00640000091610.g	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.s.b #36	ENSGT00390000017462.s.a #36	ENSGT00940000158865 #37
Mainland tiger snake	MODERN SPECIES	15	AMACR (ENSNSUG00000015037)	RAI14 (ENSNSUG00000015038) #7	ENSNSUG00000015039	RAD1 (ENSNSUG00000015040) #9	DNAJC21 (ENSNSUG00000015041) #11	AGXT2 (ENSNSUG00000015042) #12	ENSNSUG00000015043 #13	ENSNSUG00000015044 #13	SPEF2 (ENSNSUG00000015097) #14	IL7R (ENSNSUG00000015133)	CAPSL (ENSNSUG00000015134) #15	LMBRD2 (ENSNSUG00000015135) #17	SKP2 (ENSNSUG00000015136) #18	NADK2 (ENSNSUG00000015137) #19	SLC1A3 (ENSNSUG00000015143) #21	NIPBL (ENSNSUG00000015145) #22	NUP155 (ENSNSUG00000015920) #24	WDR70 (ENSNSUG00000016469) #25	GDNF (ENSNSUG00000016677) #26	EGFLAM (ENSNSUG00000016679) #27	LIFR (ENSNSUG00000016680) #28	RICTOR (ENSNSUG00000016683) #30	FYB1 (ENSNSUG00000016685) #31	C9 (ENSNSUG00000016686) #32	ENSNSUG00000016687 #33	ENSNSUG00000016688	PTGER4 (ENSNSUG00000016689) #35	ENSNSUG00000016691 #36	ENSNSUG00000016692 #36	PRKAA1 (ENSNSUG00000016695) #37	RPL37 (ENSNSUG00000016784)
Eastern brown snake	MODERN SPECIES	2	RAI14 (ENSPTXG00000007544) #7	ENSPTXG00000007548	RAD1 (ENSPTXG00000007578) #9	BRIX1 (ENSPTXG00000007579) #10	ENSPTXG00000007580	DNAJC21 (ENSPTXG00000007581) #11	AGXT2 (ENSPTXG00000007582) #12	PRLR (ENSPTXG00000007583) #13	SPEF2 (ENSPTXG00000007585) #14	ENSPTXG00000007647	CAPSL (ENSPTXG00000007648) #15	LMBRD2 (ENSPTXG00000007650) #17	SKP2 (ENSPTXG00000007653) #18	NADK2 (ENSPTXG00000007656) #19	SLC1A3 (ENSPTXG00000007729) #21	NIPBL (ENSPTXG00000007747) #22	NUP155 (ENSPTXG00000007774) #24	WDR70 (ENSPTXG00000007785) #25	GDNF (ENSPTXG00000007789) #26	EGFLAM (ENSPTXG00000007796) #27	LIFR (ENSPTXG00000007804) #28	ENSPTXG00000007808 #29	RICTOR (ENSPTXG00000007824) #30	FYB1 (ENSPTXG00000008908) #31	ENSPTXG00000008910	ENSPTXG00000008911 #32	ENSPTXG00000008912 #32	DAB2 (ENSPTXG00000008913) #33	ENSPTXG00000008914	PTGER4 (ENSPTXG00000008915) #35	TTC33 (ENSPTXG00000008916) #36
Blue-lipped sea krait	MODERN SPECIES	2923																ENSLLTG00000000198 #22
Elapidae	ANCESTRAL SPECIES	19	ENSGT00940000157400 #7	ENSGT00530000063847.b #8	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000155464 #21	ENSGT00390000010427.c.k #22	ENSGT00390000010427.c.l #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777.h #32	ENSGT00940000159777.g #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.s.b #36	ENSGT00390000017462.s.a #36
Elapidae_a	ANCESTRAL SPECIES	24	ENSGT00940000161378	ENSGT00940000157400 #7	ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000155464 #21	ENSGT00390000010427.c.k #22	ENSGT00390000010427.c.l #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776 #28	ENSGT00940000160851 #29	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000159777.g #32	ENSGT00940000155567 #33	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462.s.b #36	ENSGT00390000017462.s.a #36	ENSGT00940000158865 #37
Blue-lipped sea krait	MODERN SPECIES	4978																ENSLLTG00000016934 #22	CPLANE1 (ENSLLTG00000016922) #23	NUP155 (ENSLLTG00000016915) #24
Coelacanth	MODERN SPECIES	1631																NIPBL (ENSLACG00000005199) #22	CPLANE1 (ENSLACG00000009702) #23	ENSLACG00000011251 #24
Actinopterygii	ANCESTRAL SPECIES	102		ENSGT00500000044913 #9	ENSGT00390000014467 #10	ENSGT00510000047097 #11	ENSGT00940000156125 #12	ENSGT00940000154851.B #13	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000155776.b #28	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00940000172494	ENSGT00940000159777 #32	ENSGT01050000244902.a.a.a.a #35	ENSGT00390000017462 #36	ENSGT00940000158865 #37	ENSGT00390000005254	ENSGT01030000234535.C
Reedfish	MODERN SPECIES	13	ENSECRG00000002689 #8	rad1 (ENSECRG00000002666) #9	BRIX1 (ENSECRG00000002650) #10	dnajc21 (ENSECRG00000002628) #11	agxt2 (ENSECRG00000002604) #12	prlra (ENSECRG00000002581) #13	ENSECRG00000002548 #14	ENSECRG00000002509	capslb (ENSECRG00000002477) #15	UGT3A2 (ENSECRG00000002455) #16	lmbrd2a (ENSECRG00000002356) #17	skp2 (ENSECRG00000002305) #18	nadk2 (ENSECRG00000002285) #19	RANBP3L (ENSECRG00000002258) #20	slc1a3b (ENSECRG00000002241) #21	nipbla (ENSECRG00000002104) #22	CPLANE1 (ENSECRG00000002039) #23	ENSECRG00000002009	vps13a (ENSECRG00000001789)	GNA14 (ENSECRG00000001717)	ENSECRG00000001693	CEP78 (ENSECRG00000001656)	psat1 (ENSECRG00000001633)	TLE4 (ENSECRG00000001564)	ENSECRG00000001508	ENSECRG00000001414	ENSECRG00000001344	RASEF (ENSECRG00000001298)	FRMD3 (ENSECRG00000001204)	ENSECRG00000001169	IDNK (ENSECRG00000001151)
Neopterygii	ANCESTRAL SPECIES	145	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000164634	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT00390000008160 #14	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464 #21	ENSGT00390000010427.c #22	ENSGT00800000124150 #23	ENSGT00730000112225	ENSGT00390000016532 #24	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT00940000165259	ENSGT00940000155776.b #28	ENSGT00390000002096 #30	ENSGT00530000063460.A.b #31	ENSGT00500000044987
Spotted gar	MODERN SPECIES	658	me2 (ENSLOCG00000012857)	mapk4 (ENSLOCG00000012850)	ska1 (ENSLOCG00000012846)	tspan36 (ENSLOCG00000012836)	cfap53 (ENSLOCG00000012829)	myo5b (ENSLOCG00000012796)	spef2 (ENSLOCG00000012789) #14	ENSLOCG00000012782	capslb (ENSLOCG00000012779) #15	UGT3A2 (ENSLOCG00000012773) #16	lmbrd2a (ENSLOCG00000012758) #17	skp2 (ENSLOCG00000012750) #18	nadk2 (ENSLOCG00000012738) #19	RANBP3L (ENSLOCG00000012736) #20	slc1a3b (ENSLOCG00000012724) #21	nipbla (ENSLOCG00000012704) #22	CPLANE1 (ENSLOCG00000012697) #23	ENSLOCG00000017551	nup155 (ENSLOCG00000012677) #24	WDR70 (ENSLOCG00000012656) #25	gdnfa (ENSLOCG00000012652) #26	EGFLAM (ENSLOCG00000012642) #27	lifra (ENSLOCG00000012627)	ENSLOCG00000012617 #28	RICTOR (ENSLOCG00000012599) #30	ENSLOCG00000012577 #31	ENSLOCG00000012573 #8	ENSLOCG00000012565	zgc:153352 (ENSLOCG00000012552)	ENSLOCG00000012543	pum3 (ENSLOCG00000012529)
Osteoglossocephalai	ANCESTRAL SPECIES	11	ENSGT00940000175038	ENSGT00940000155855	ENSGT00500000044987	ENSGT00940000166240	ENSGT00530000063460.A.b #31	ENSGT00390000002096 #30	ENSGT00940000155776.b #28	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00940000161263 #16	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00940000155464.a.b #21	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00940000160973	ENSGT00940000157435
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	53	ENSGT00940000153432.B	ENSGT00940000166240	ENSGT00530000063460.A.b #31	ENSGT00390000002096 #30	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651 #17	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.m #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.c #26	ENSGT00940000158504.y #27	ENSGT01100000263502.B.a.b.a
P. kingsleyae	MODERN SPECIES	9	nnt (ENSPKIG00000020489)	paip1 (ENSPKIG00000020456)	ENSPKIG00000020440	ENSPKIG00000020394 #31	ENSPKIG00000020272 #30	ENSPKIG00000020146	cfap53 (ENSPKIG00000020233)	myo5b (ENSPKIG00000020070)	ENSPKIG00000020030	capslb (ENSPKIG00000019975) #15	lmbrd2a (ENSPKIG00000019894) #17	skp2 (ENSPKIG00000019858) #18	nadk2 (ENSPKIG00000019798) #19	RANBP3L (ENSPKIG00000019754) #20	slc1a3a (ENSPKIG00000019722) #21	nipbla (ENSPKIG00000019608) #22	nup155 (ENSPKIG00000019534) #24	ENSPKIG00000019519	ENSPKIG00000019502 #23	WDR70 (ENSPKIG00000019441) #25	GDNF (ENSPKIG00000019413) #26	EGFLAM (ENSPKIG00000019380) #27	pdlim5b (ENSPKIG00000019339)	BMPR1B (ENSPKIG00000019296)	UNC5C (ENSPKIG00000019220)	rnf170 (ENSPKIG00000019162)	HOOK3 (ENSPKIG00000019014)	THAP1 (ENSPKIG00000018957)	june (ENSPKIG00000018944)	tek (ENSPKIG00000018914)	ift74 (ENSPKIG00000018861)
Asian bonytongue	MODERN SPECIES	21	nnt (ENSSFOG00015019697)	paip1 (ENSSFOG00015019741)	ENSSFOG00015019782	ENSSFOG00015019801 #31	ENSSFOG00015032651 #30	cfap53 (ENSSFOG00015019852)	cfap53 (ENSSFOG00015019875)	myo5b (ENSSFOG00015019925)	ENSSFOG00015024724	capslb (ENSSFOG00015020107) #15	lmbrd2a (ENSSFOG00015020133) #17	skp2 (ENSSFOG00015020193) #18	nadk2 (ENSSFOG00015020227) #19	RANBP3L (ENSSFOG00015020263) #20	slc1a3a (ENSSFOG00015020299) #21	NIPBL (ENSSFOG00015020350) #22	nup155 (ENSSFOG00015020458) #24	ENSSFOG00015020507	ENSSFOG00015020522 #23	WDR70 (ENSSFOG00015020571) #25	GDNF (ENSSFOG00015020615) #26	EGFLAM (ENSSFOG00015020623) #27	opn4xa (ENSSFOG00015020429)	pdlim5b (ENSSFOG00015020683)	ENSSFOG00015020711	UNC5C (ENSSFOG00015020763)	mbd2 (ENSSFOG00015020812)	DCC (ENSSFOG00015020828)	zgc:152948 (ENSSFOG00015020877)	wdr91 (ENSSFOG00015020923)	RAB27B (ENSSFOG00015020985)
Osteoglossiformes	ANCESTRAL SPECIES	95												ENSGT00940000155776.b #28	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c.n #22	ENSGT00950000182993.A.b.d #26	ENSGT00940000158504.x #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000164634	ENSGT00940000164067.C	ENSGT00910000144252.d.b
P. kingsleyae	MODERN SPECIES	31	smad2 (ENSPKIG00000015327)	ENSPKIG00000015383	rchy1 (ENSPKIG00000015487)	kcnv2b (ENSPKIG00000015526)	rbp4l (ENSPKIG00000015567)	IDUA (ENSPKIG00000015667)	ENSPKIG00000015734	ENSPKIG00000015751	zgc:153352 (ENSPKIG00000015775)	ENSPKIG00000015811 #31	RICTOR (ENSPKIG00000015844) #30	ENSPKIG00000015907 #28	lifra (ENSPKIG00000015938)	spef2 (ENSPKIG00000016017) #14	slc1a3b (ENSPKIG00000016130) #21	nipbla (ENSPKIG00000016200) #22	GDNF (ENSPKIG00000016387) #26	EGFLAM (ENSPKIG00000016426) #27	ENSPKIG00000016459	pdlim5a (ENSPKIG00000016511)	ENSPKIG00000016598	bmpr1ba (ENSPKIG00000016623)	UNC5C (ENSPKIG00000016704)	ENSPKIG00000016792	MEX3C (ENSPKIG00000016813)	smad4a (ENSPKIG00000016848)	elac1 (ENSPKIG00000016890)	me2 (ENSPKIG00000016910)	mapk4 (ENSPKIG00000016973)	tspan36 (ENSPKIG00000017013)	prf1.5 (ENSPKIG00000017028)
Asian bonytongue	MODERN SPECIES	8	TMEM267 (ENSSFOG00015026755)	smad2 (ENSSFOG00015019219)	ENSSFOG00015019263	rchy1 (ENSSFOG00015027824)	kcnv2b (ENSSFOG00015019356)	rbp4l (ENSSFOG00015019366)	IDUA (ENSSFOG00015019424)	ENSSFOG00015019448	ENSSFOG00015019516	ENSSFOG00015019549 #31	RICTOR (ENSSFOG00015019570) #30	ENSSFOG00015019630 #28	lifra (ENSSFOG00015019675)	spef2 (ENSSFOG00015019714) #14	SLC1A3 (ENSSFOG00015019824) #21	nipbla (ENSSFOG00015019926) #22	GDNF (ENSSFOG00015020253) #26	EGFLAM (ENSSFOG00015020285) #27	opn4xb (ENSSFOG00015020650)	pdlim5a (ENSSFOG00015020504)	bmpr1ba (ENSSFOG00015020581)	UNC5C (ENSSFOG00015020612)	STPG2 (ENSSFOG00015020690)	MEX3C (ENSSFOG00015025525)	smad4a (ENSSFOG00015020724)	elac1 (ENSSFOG00015020776)	me2 (ENSSFOG00015020794)	mapk4 (ENSSFOG00015020862)	tspan36 (ENSSFOG00015020874)	prf1.5 (ENSSFOG00015020893)	SMARCAD1 (ENSSFOG00015020909)
Clupeocephala	ANCESTRAL SPECIES	4	ENSGT00940000160466	ENSGT00940000165063	ENSGT00390000005847	ENSGT00940000165287.a.a	ENSGT00940000165287.b	ENSGT00900000141362.a.a	ENSGT00940000158588	ENSGT00510000048500	ENSGT00940000156466 #15	ENSGT00390000018651.a #17	ENSGT00950000182993.A.a.j ##26	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00940000160973	ENSGT00940000157435.a.a	ENSGT00730000111224
Euteleosteomorpha	ANCESTRAL SPECIES	363											ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00940000161263 #16	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT00940000160897	ENSGT00950000183010.a.a.b	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00390000018651.a #17	ENSGT00940000156466 #15	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.b.a	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	12	tor4ab (ENSELUG00000021631)	ENSELUG00000021596	wdr31 (ENSELUG00000021614)	ENSELUG00000024691	GAK (ENSELUG00000021588)	HIRA (ENSELUG00000000940)	TMEM132C (ENSELUG00000021408)	ENSELUG00000027064	aacs (ENSELUG00000021384)	bri3bp (ENSELUG00000033293)	lifra (ENSELUG00000021323)	spef2 (ENSELUG00000021279) #14	UGT3A2 (ENSELUG00000021227) #16	lmbrd2a (ENSELUG00000021196) #17	slc1a3a (ENSELUG00000021115) #21	nipbla (ENSELUG00000021054) #22	ndc80 (ENSELUG00000000915)	GDNF (ENSELUG00000020816) #26	EGFLAM (ENSELUG00000020787) #27	opn4xb (ENSELUG00000001460)	pdlim5a (ENSELUG00000020544)	bmpr1ba (ENSELUG00000020490)	ENSELUG00000029675	UNC5C (ENSELUG00000020447)	ENSELUG00000034665	STPG2 (ENSELUG00000020348)	MEX3C (ENSELUG00000020179)	SMAD4 (ENSELUG00000020159)	elac1 (ENSELUG00000020106)	aptx (ENSELUG00000028256)	me2 (ENSELUG00000020081)
Northern pike	MODERN SPECIES	13	MFHAS1 (ENSELUG00000024348)	eri1 (ENSELUG00000024302)	ppp1r3b (ENSELUG00000024294)	lmbrd2b (ENSELUG00000024278) #17	capslb (ENSELUG00000024179) #15	ENSELUG00000024168	myo5b (ENSELUG00000024138)	cfap53 (ENSELUG00000024017)	ENSELUG00000023982	ENSELUG00000034220	ENSELUG00000023909 #30	skp2 (ENSELUG00000023797) #18	nadk2 (ENSELUG00000023791) #19	RANBP3L (ENSELUG00000023720) #20	SLC1A3 (ENSELUG00000023711) #21	ENSELUG00000023664 #22	nup155 (ENSELUG00000023540) #24	ENSELUG00000023445	ENSELUG00000023427	ARVCF (ENSELUG00000023403)	npffr1l3 (ENSELUG00000023384)	BMP10 (ENSELUG00000023371)	smad4a (ENSELUG00000023358)	rfx3 (ENSELUG00000023330)	glis3 (ENSELUG00000023233)	UNC5C (ENSELUG00000023194)	bmpr1bb (ENSELUG00000023104)	pdlim5b (ENSELUG00000023053)	opn4xa (ENSELUG00000022879)	gdnfa (ENSELUG00000022651) #26	WDR70 (ENSELUG00000022635) #25
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	479								ENSGT00390000002096.s.b #30	ENSGT00390000007918.d #18	ENSGT00390000006320.r #19	ENSGT00390000002096.s.a #30	ENSGT00390000007918.c #18	ENSGT00390000006320.q #19	ENSGT00940000161387.a #20	ENSGT00940000155464.a.a.g #21	ENSGT00390000010427.c.q.a #22	ENSGT00390000016532.j #24	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00950000183010.a.a.b.d	ENSGT00940000158928.n	ENSGT00530000063205.B.k	ENSGT00940000159475.c.i	ENSGT00390000018651.a.f #17	ENSGT00940000156466.tb.b #15	ENSGT01030000234908.d	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a #30	ENSGT00390000007918.c #18	ENSGT00390000006320.q #19	ENSGT00940000161387.a #20	ENSGT00940000155464.a.a.g #21	ENSGT00390000010427.c.q.a #22	ENSGT00390000016532.j #24	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Salmo	ANCESTRAL SPECIES	54	ENSGT00940000160897.m	ENSGT00950000183010.a.a.b.d	ENSGT00940000158928.n	ENSGT00530000063205.B.k	ENSGT00940000159475.c.i	ENSGT00390000018651.a.f #17	ENSGT01030000234908.d	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a #30	ENSGT00390000007918.c #18	ENSGT00390000006320.q #19	ENSGT00940000161387.a #20	ENSGT00940000155464.a.a.g #21	ENSGT00390000010427.c.q.a #22	ENSGT00390000016532.j #24	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Atlantic salmon	MODERN SPECIES		nkx6.1 (ENSSSAG00000007552)	ENSSSAG00000007561	ENSSSAG00000007587	ENSSSAG00000007591	ppp1r3b (ENSSSAG00000117668)	lmbrd2b (ENSSSAG00000007614) #17	ENSSSAG00000009360	myo5b (ENSSSAG00000009979)	cfap53 (ENSSSAG00000068107)	ENSSSAG00000068114	ENSSSAG00000068165 #30	SKP2 (ENSSSAG00000069118) #18	NADK2 (ENSSSAG00000069298) #19	RANBP3L (ENSSSAG00000001289) #20	SLC1A3 (ENSSSAG00000000163) #21	ENSSSAG00000000423 #22	ENSSSAG00000089647 #24	ENSSSAG00000000715	ENSSSAG00000083173	ENSSSAG00000000743	npffr1l3 (ENSSSAG00000086335)	ENSSSAG00000000757	smad4a (ENSSSAG00000000795)	rfx3 (ENSSSAG00000000897)	glis3 (ENSSSAG00000001096)	UNC5C (ENSSSAG00000001322)	bmpr1bb (ENSSSAG00000001977)	pdlim5b (ENSSSAG00000002083)	opn4xa (ENSSSAG00000002109)	EGFLAM (ENSSSAG00000114100) #27	gdnf (ENSSSAG00000002112) #26
River trout	MODERN SPECIES	15	MFHAS1 (ENSSTUG00000036145)	eri1 (ENSSTUG00000036149)	ppp1r3b (ENSSTUG00000036162)	lmbrd2b (ENSSTUG00000036178) #17	capslb (ENSSTUG00000036581) #15	ENSSTUG00000036602	ENSSTUG00000036607	myo5b (ENSSTUG00000036648)	cfap53 (ENSSTUG00000037964)	ENSSTUG00000037985	ENSSTUG00000038043 #30	skp2 (ENSSTUG00000039007) #18	nadk2 (ENSSTUG00000039039) #19	ENSSTUG00000039305 #20	SLC1A3 (ENSSTUG00000039319) #21	ENSSTUG00000039642 #22	nup155 (ENSSTUG00000039855) #24	ENSSTUG00000041795	ENSSTUG00000041824	ARVCF (ENSSTUG00000041839)	npffr1l3 (ENSSTUG00000041878)	BMP10 (ENSSTUG00000041896)	smad4a (ENSSTUG00000041923)	rfx3 (ENSSTUG00000042197)	glis3 (ENSSTUG00000042999)	UNC5C (ENSSTUG00000043259)	bmpr1bb (ENSSTUG00000046660)	pdlim5b (ENSSTUG00000046781)	opn4xa (ENSSTUG00000046836)	EGFLAM (ENSSTUG00000046854) #27	gdnfa (ENSSTUG00000046858) #26
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00950000183010.a.a.b.d	ENSGT00940000158928.n	ENSGT00530000063205.B.k	ENSGT00940000159475.c.i	ENSGT00390000018651.a.f #17	ENSGT00940000156466.tb.b #15	ENSGT01030000234908.d	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a #30	ENSGT00390000007918.c #18	ENSGT00390000006320.q #19	ENSGT00940000161387.a #20	ENSGT00940000155464.a.a.g #21	ENSGT00390000010427.c.q.a #22	ENSGT00390000016532.j #24	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00950000183010.a.a.b.d	ENSGT00940000158928.n	ENSGT00530000063205.B.k	ENSGT00940000159475.c.i	ENSGT00390000018651.a.f #17	ENSGT00940000156466.tb.b #15	ENSGT01030000234908.d	ENSGT00940000155402.a.b.g	ENSGT00970000193642	ENSGT00940000165259.a	ENSGT00390000002096.s.a #30	ENSGT00390000007918.c #18	ENSGT00390000006320.q #19	ENSGT00940000161387.a #20	ENSGT00940000155464.a.a.g #21	ENSGT00390000010427.c.q.a #22	ENSGT00390000016532.j #24	ENSGT00730000112225.f	ENSGT00940000158044.b.d	ENSGT00940000157027.n.b.a	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000156279.f.f	ENSGT00940000157435.a.b.l	ENSGT01050000244879.a.a.b.d	ENSGT00940000156896.c	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000155919.b.b.a	ENSGT00940000155292.db.b.b.a	ENSGT01100000263502.B.a.b.a.c
Chinook salmon	MODERN SPECIES	12	rpl17 (ENSOTSG00005043351)	MFHAS1 (ENSOTSG00005043350)	eri1 (ENSOTSG00005043349)	ppp1r3b (ENSOTSG00005043348)	lmbrd2b (ENSOTSG00005043316) #17	capslb (ENSOTSG00005043312) #15	ENSOTSG00005043311	myo5b (ENSOTSG00005043022)	cfap53 (ENSOTSG00005043016)	ENSOTSG00005043015	ENSOTSG00005043012 #30	skp2 (ENSOTSG00005043011) #18	nadk2 (ENSOTSG00005043007) #19	RANBP3L (ENSOTSG00005043005) #20	SLC1A3 (ENSOTSG00005042980) #21	ENSOTSG00005042935 #22	nup155 (ENSOTSG00005042895) #24	ENSOTSG00005042889	ENSOTSG00005042888	ARVCF (ENSOTSG00005042886)	npffr1l3 (ENSOTSG00005042744)	BMP10 (ENSOTSG00005042742)	smad4a (ENSOTSG00005042678)	rfx3 (ENSOTSG00005042621)	glis3 (ENSOTSG00005042613)	UNC5C (ENSOTSG00005038352)	bmpr1bb (ENSOTSG00005038334)	pdlim5b (ENSOTSG00005038329)	opn4xa (ENSOTSG00005038325)	EGFLAM (ENSOTSG00005038318) #27	gdnfa (ENSOTSG00005038314) #26
Coho salmon	MODERN SPECIES	15	nkx6.1 (ENSOKIG00005019070)	rpl17 (ENSOKIG00005019091)	MFHAS1 (ENSOKIG00005019122)	eri1 (ENSOKIG00005019126)	ppp1r3b (ENSOKIG00005019138)	lmbrd2b (ENSOKIG00005019146) #17	capslb (ENSOKIG00005019214) #15	ENSOKIG00005019223	myo5b (ENSOKIG00005019261)	cfap53 (ENSOKIG00005019831)	ENSOKIG00005019847	ENSOKIG00005019937 #30	NADK2 (ENSOKIG00005020080) #19	ENSOKIG00005020130 #20	SLC1A3 (ENSOKIG00005020166) #21	ENSOKIG00005020398 #22	nup155 (ENSOKIG00005020587) #24	ENSOKIG00005020783	ENSOKIG00005020799	ARVCF (ENSOKIG00005020840)	npffr1l3 (ENSOKIG00005021089)	BMP10 (ENSOKIG00005021094)	smad4a (ENSOKIG00005021114)	rfx3 (ENSOKIG00005021336)	glis3 (ENSOKIG00005022187)	UNC5C (ENSOKIG00005022294)	bmpr1bb (ENSOKIG00005024956)	pdlim5b (ENSOKIG00005025261)	ENSOKIG00005025319	opn4xa (ENSOKIG00005025331)	EGFLAM (ENSOKIG00005025368) #27
Rainbow trout	MODERN SPECIES	26	ppp1r3b (ENSOMYG00000067363)	lmbrd2b (ENSOMYG00000041315) #17	capslb (ENSOMYG00000041310) #15	ENSOMYG00000041305	myo5b (ENSOMYG00000031585)	ENSOMYG00000066204	cfap53 (ENSOMYG00000029500)	ENSOMYG00000054485	ENSOMYG00000029474	ENSOMYG00000061263	ENSOMYG00000029426 #30	SKP2 (ENSOMYG00000029285) #18	ENSOMYG00000029237 #19	ENSOMYG00000058433	SLC1A3 (ENSOMYG00000029087) #21	ENSOMYG00000028750 #22	ENSOMYG00000027761 #24	ENSOMYG00000027345	ENSOMYG00000027312	npffr1l3 (ENSOMYG00000064507)	ENSOMYG00000056672	smad4a (ENSOMYG00000027201)	rfx3 (ENSOMYG00000025811)	glis3 (ENSOMYG00000025428)	UNC5C (ENSOMYG00000024830)	bmpr1bb (ENSOMYG00000024378)	ENSOMYG00000052908	pdlim5b (ENSOMYG00000024242)	ENSOMYG00000071736	opn4xa (ENSOMYG00000024137)	EGFLAM (ENSOMYG00000024067) #27
Huchen	MODERN SPECIES	336	nkx6.1 (ENSHHUG00000036919)	rpl17 (ENSHHUG00000036924)	MFHAS1 (ENSHHUG00000036958)	eri1 (ENSHHUG00000036962)	ppp1r3b (ENSHHUG00000036970)	lmbrd2b (ENSHHUG00000036973) #17	ENSHHUG00000037087	ENSHHUG00000037090	myo5b (ENSHHUG00000037123)	cfap53 (ENSHHUG00000039484)	ENSHHUG00000039501	skp2 (ENSHHUG00000039623) #18	nadk2 (ENSHHUG00000039657) #19	ENSHHUG00000039713 #20	SLC1A3 (ENSHHUG00000039718) #21	ENSHHUG00000039753 #22	nup155 (ENSHHUG00000040054) #24	ENSHHUG00000040073	ARVCF (ENSHHUG00000040085)	npffr1l3 (ENSHHUG00000040093)	BMP10 (ENSHHUG00000040205)	smad4a (ENSHHUG00000040209)	rfx3 (ENSHHUG00000040281)	glis3 (ENSHHUG00000040396)
Salmoninae	ANCESTRAL SPECIES	407														ENSGT00940000161387.b #20	ENSGT00940000155464.a.a.h #21	ENSGT00390000010427.c.q.b #22	ENSGT00390000016532.k #24	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d #26	ENSGT00390000015433.g.a.a #25
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00940000160897.n	ENSGT00950000183010.a.a.b.c	ENSGT00940000158928.m	ENSGT00530000063205.B.l	ENSGT00940000159475.c.j	ENSGT00390000018651.a.e #17	ENSGT00940000156466.tb.a.b #15	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b #30	ENSGT00390000007918.d #18	ENSGT00390000006320.r #19	ENSGT00940000161387.b #20	ENSGT00940000155464.a.a.h #21	ENSGT00390000010427.c.q.b #22	ENSGT00390000016532.k #24	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d #26	ENSGT00390000015433.g.a.a #25
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00940000160897.n	ENSGT00950000183010.a.a.b.c	ENSGT00940000158928.m	ENSGT00530000063205.B.l	ENSGT00940000159475.c.j	ENSGT00390000018651.a.e #17	ENSGT00940000156466.tb.a.b #15	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b #30	ENSGT00390000007918.d #18	ENSGT00390000006320.r #19	ENSGT00940000161387.b #20	ENSGT00940000155464.a.a.h #21	ENSGT00390000010427.c.q.b #22	ENSGT00390000016532.k #24	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d #26	ENSGT00530000063811.B.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00940000160897.n	ENSGT00950000183010.a.a.b.c	ENSGT00940000158928.m	ENSGT00530000063205.B.l	ENSGT00940000159475.c.j	ENSGT00390000018651.a.e #17	ENSGT00940000156466.tb.a.b #15	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b #30	ENSGT00390000007918.d #18	ENSGT00390000006320.r #19	ENSGT00940000161387.b #20	ENSGT00940000155464.a.a.h #21	ENSGT00390000010427.c.q.b #22	ENSGT00390000016532.k #24	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d #26	ENSGT00530000063811.B.b.c
Chinook salmon	MODERN SPECIES	33	abraxas1 (ENSOTSG00005047192)	gpat3 (ENSOTSG00005047195)	nkx6.1 (ENSOTSG00005047486)	ENSOTSG00005047487	ENSOTSG00005000796	eri1 (ENSOTSG00005000916)	ppp1r3b (ENSOTSG00005001175)	lmbrd2b (ENSOTSG00005001331) #17	capslb (ENSOTSG00005003361) #15	ENSOTSG00005003363	myo5b (ENSOTSG00005003595)	ENSOTSG00005024755 #30	skp2 (ENSOTSG00005025201) #18	RANBP3L (ENSOTSG00005025207) #20	SLC1A3 (ENSOTSG00005025217) #21	ENSOTSG00005025366 #22	nup155 (ENSOTSG00005025431) #24	ENSOTSG00005025441	ENSOTSG00005025444	ARVCF (ENSOTSG00005025448)	npffr1l3 (ENSOTSG00005025462)	BMP10 (ENSOTSG00005025463)	smad4a (ENSOTSG00005025465)	rfx3 (ENSOTSG00005025481)	glis3 (ENSOTSG00005026106)	ENSOTSG00005026107	ENSOTSG00005026110	opn4xa (ENSOTSG00005026111)	gdnfa (ENSOTSG00005026112) #26	ENSOTSG00005026113	FAM222A (ENSOTSG00005026115)
Coho salmon	MODERN SPECIES	26	RPL17 (ENSOKIG00005018873)	MFHAS1 (ENSOKIG00005018930)	ERI1 (ENSOKIG00005018940)	ENSOKIG00005018975	ppp1r3b (ENSOKIG00005018982)	lmbrd2b (ENSOKIG00005019089) #17	CAPSL (ENSOKIG00005019987) #15	ENSOKIG00005019996	myo5b (ENSOKIG00005020119)	ENSOKIG00005020916	ENSOKIG00005020959 #30	skp2 (ENSOKIG00005021126) #18	nadk2 (ENSOKIG00005021162) #19	RANBP3L (ENSOKIG00005021233) #20	SLC1A3 (ENSOKIG00005021263) #21	ENSOKIG00005021324 #22	ENSOKIG00005022343	ENSOKIG00005022380	ARVCF (ENSOKIG00005022603)	npffr1l3 (ENSOKIG00005022916)	BMP10 (ENSOKIG00005023344)	smad4a (ENSOKIG00005023370)	rfx3 (ENSOKIG00005000211)	glis3 (ENSOKIG00005000292)	UNC5C (ENSOKIG00005000358)	bmpr1bb (ENSOKIG00005000475)	pdlim5b (ENSOKIG00005000574)	opn4xa (ENSOKIG00005000598)	gdnfa (ENSOKIG00005000606) #26	FAM222A (ENSOKIG00005000613)	ENSOKIG00005000617
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000028373	nkx6.1 (ENSOMYG00000028689)	ENSOMYG00000028729	ENSOMYG00000028785	ENSOMYG00000028800	ppp1r3b (ENSOMYG00000003161)	lmbrd2b (ENSOMYG00000003753) #17	ENSOMYG00000004193 #15	ENSOMYG00000004204	myo5b (ENSOMYG00000009470)	ENSOMYG00000073044	ENSOMYG00000026109 #30	SKP2 (ENSOMYG00000027423) #18	RANBP3L (ENSOMYG00000027601) #20	SLC1A3 (ENSOMYG00000061009) #21	ENSOMYG00000027674 #22	ENSOMYG00000049772	ENSOMYG00000027976	ENSOMYG00000027986	ENSOMYG00000028059	ENSOMYG00000070897	npffr1l3 (ENSOMYG00000028242)	ENSOMYG00000028251	smad4a (ENSOMYG00000028296)	rfx3 (ENSOMYG00000028433)	ENSOMYG00000053960	ENSOMYG00000028571	ENSOMYG00000028573	glis3 (ENSOMYG00000028581)	UNC5C (ENSOMYG00000028666)	ENSOMYG00000050431
Salmo	ANCESTRAL SPECIES	13	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00940000160897.n	ENSGT00950000183010.a.a.b.c	ENSGT00940000158928.m	ENSGT00530000063205.B.l	ENSGT00940000159475.c.j	ENSGT00390000018651.a.e #17	ENSGT00940000156466.tb.a.a.a #15	ENSGT01030000234908.c	ENSGT00940000155402.a.b.h	ENSGT00390000002096.s.b #30	ENSGT00390000007918.d #18	ENSGT00390000006320.r #19	ENSGT00940000161387.b #20	ENSGT00940000155464.a.a.h #21	ENSGT00390000010427.c.q.b #22	ENSGT00390000016532.k #24	ENSGT00730000112225.e	ENSGT00940000158044.b.c	ENSGT00940000157027.n.b.b	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000156279.f.e	ENSGT00940000157435.a.b.k	ENSGT01050000244879.a.a.b.c	ENSGT00940000156896.d	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000155919.b.b.b	ENSGT00940000155292.db.b.b.b	ENSGT01100000263502.B.a.b.a.d	ENSGT00950000182993.A.b.e.d #26	ENSGT00390000015433.g.a.a #25
Atlantic salmon	MODERN SPECIES	4	nkx6.1 (ENSSSAG00000120093)	ENSSSAG00000071322	ENSSSAG00000071317	thex1 (ENSSSAG00000094462)	ppp1r3b (ENSSSAG00000071303)	ENSSSAG00000092956	lmbrd2b (ENSSSAG00000070502) #17	ENSSSAG00000009350 #15	ENSSSAG00000105075	myo5b (ENSSSAG00000069046)	ENSSSAG00000068795 #30	SKP2 (ENSSSAG00000068716) #18	NADK2 (ENSSSAG00000068701) #19	RANBP3L (ENSSSAG00000068697) #20	SLC1A3 (ENSSSAG00000068621) #21	ENSSSAG00000068186 #22	ENSSSAG00000063799 #24	ENSSSAG00000107554	ENSSSAG00000095093	ENSSSAG00000100999	ENSSSAG00000063454	npffr1l3 (ENSSSAG00000000750)	ENSSSAG00000100713	smad4a (ENSSSAG00000062684)	rfx3 (ENSSSAG00000057457)	glis3 (ENSSSAG00000057357)	UNC5C (ENSSSAG00000055545)	bmpr1bb (ENSSSAG00000054353)	pdlim5b (ENSSSAG00000054329)	opn4xa (ENSSSAG00000054324)	gdnfa (ENSSSAG00000098062) #26
Huchen	MODERN SPECIES	1080											ENSHHUG00000019842 #30	skp2 (ENSHHUG00000019999) #18	ENSHHUG00000020054 #19	RANBP3L (ENSHHUG00000020077) #20	SLC1A3 (ENSHHUG00000020089) #21	ENSHHUG00000020137 #22	ENSHHUG00000020151	nup155 (ENSHHUG00000020176) #24	ENSHHUG00000020744	ENSHHUG00000020776	ARVCF (ENSHHUG00000020789)	npffr1l3 (ENSHHUG00000020821)	BMP10 (ENSHHUG00000020900)	smad4a (ENSHHUG00000020905)	rfx3 (ENSHHUG00000021086)	glis3 (ENSHHUG00000021162)	ENSHHUG00000021217
Salmoninae	ANCESTRAL SPECIES	455	ENSGT00940000169174	ENSGT00950000182888.b.f	ENSGT00940000166999.A	ENSGT00910000144273.c	ENSGT00940000159527.s.a	ENSGT00550000074919	ENSGT00940000154702.b	ENSGT00940000156044	ENSGT00390000002024	ENSGT00940000164807.A.h.a.b.b.b.b.b	ENSGT00390000016821.d	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.r #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4555														lmbrd2a (ENSHHUG00000040078) #17	slc1a3a (ENSHHUG00000040048) #21	nipbla (ENSHHUG00000040009) #22
Huchen	MODERN SPECIES	6338																NIPBL (ENSHHUG00000023528) #22	ENSHHUG00000023546	ENSHHUG00000023557
Salmoninae_a	ANCESTRAL SPECIES	113	ENSGT00950000182888.b.f	ENSGT00940000166999.A	ENSGT00910000144273.c	ENSGT00940000159527.s.a	ENSGT00550000074919	ENSGT00940000154702.b	ENSGT01090000260440.a.a	ENSGT00940000156044	ENSGT00390000002024	ENSGT00940000164807.A.h.a.b.b.b.b.b.b	ENSGT00390000016821.d	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.r #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26
Oncorhynchus	ANCESTRAL SPECIES	77	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00950000182888.b.f	ENSGT00940000166999.A	ENSGT00910000144273.c	ENSGT00940000159527.s.a	ENSGT00550000074919	ENSGT00940000154702.b	ENSGT01090000260440.a.a	ENSGT00940000156044.b	ENSGT00390000002024	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.r #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26
Oncorhynchus_a	ANCESTRAL SPECIES	87	ENSGT00940000169174	ENSGT00950000182888.b.f	ENSGT00940000166999.A	ENSGT00910000144273.c	ENSGT00940000159527.s.a	ENSGT00550000074919	ENSGT00940000154702.b	ENSGT01090000260440.a.a	ENSGT00940000156044.b	ENSGT00390000002024	ENSGT01100000263520.a.a.a.a.b.a.c.b.a.b.a.a.a	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.r #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26
Coho salmon	MODERN SPECIES	22	ENSOKIG00005000112	wdr31 (ENSOKIG00005000129)	GAK (ENSOKIG00005000197)	HIRA (ENSOKIG00005000314)	ENSOKIG00005000380	ENSOKIG00005000387	ENSOKIG00005000393	ENSOKIG00005000397	aacs (ENSOKIG00005000410)	bri3bp (ENSOKIG00005000425)	ENSOKIG00005000433	lifra (ENSOKIG00005000452)	spef2 (ENSOKIG00005000629) #14	lmbrd2a (ENSOKIG00005000899) #17	slc1a3a (ENSOKIG00005001132) #21	nipbla (ENSOKIG00005001188) #22	ndc80 (ENSOKIG00005001262)	ENSOKIG00005001290	GDNF (ENSOKIG00005001306) #26	EGFLAM (ENSOKIG00005001330) #27	opn4xb (ENSOKIG00005001378)	pdlim5a (ENSOKIG00005001400)	bmpr1ba (ENSOKIG00005001467)	UNC5C (ENSOKIG00005001625)	ENSOKIG00005002631	ENSOKIG00005002635	ENSOKIG00005002639	STPG2 (ENSOKIG00005002652)	MEX3C (ENSOKIG00005002673)	SMAD4 (ENSOKIG00005002696)	elac1 (ENSOKIG00005002737)
Chinook salmon	MODERN SPECIES	28	tmed7 (ENSOTSG00005009996)	fem1c (ENSOTSG00005009995)	ENSOTSG00005009981	pggt1b (ENSOTSG00005009911)	trim36 (ENSOTSG00005009903)	CCSER1 (ENSOTSG00005009902)	ENSOTSG00005009900	ENSOTSG00005009899	aacs (ENSOTSG00005009898)	bri3bp (ENSOTSG00005009897)	ENSOTSG00005009896	lifra (ENSOTSG00005009894)	spef2 (ENSOTSG00005008177) #14	lmbrd2a (ENSOTSG00005007936) #17	slc1a3a (ENSOTSG00005007909) #21	nipbla (ENSOTSG00005007893) #22	ndc80 (ENSOTSG00005007840)	GDNF (ENSOTSG00005007836) #26	EGFLAM (ENSOTSG00005007833) #27	opn4xb (ENSOTSG00005007820)	pdlim5a (ENSOTSG00005007787)	bmp3 (ENSOTSG00005007780)	ENSOTSG00005007776	HIRA (ENSOTSG00005007703)	GAK (ENSOTSG00005000391)	ENSOTSG00005000324	ENSOTSG00005000322	TRIM9 (ENSOTSG00005000318)	ENSOTSG00005000313	ENSOTSG00005045740	ENSOTSG00005008109
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000002610	wdr31 (ENSOMYG00000002626)	ENSOMYG00000003089	ENSOMYG00000003926	ENSOMYG00000076521	TMEM132C (ENSOMYG00000052027)	ENSOMYG00000064719	ENSOMYG00000071750	aacs (ENSOMYG00000008811)	bri3bp (ENSOMYG00000008792)	ENSOMYG00000008785	lifra (ENSOMYG00000008751)	spef2 (ENSOMYG00000007664) #14	lmbrd2a (ENSOMYG00000006085) #17	slc1a3a (ENSOMYG00000005344) #21	nipbla (ENSOMYG00000004902) #22	ENSOMYG00000004439	ENSOMYG00000058117	rtgdnf (ENSOMYG00000004348) #26	ENSOMYG00000004270 #27	opn4xb (ENSOMYG00000004122)	pdlim5a (ENSOMYG00000008880)	bmpr1ba (ENSOMYG00000009032)	UNC5C (ENSOMYG00000009126)	ENSOMYG00000075329	STPG2 (ENSOMYG00000009152)	MEX3C (ENSOMYG00000075838)	SMAD4 (ENSOMYG00000009189)	elac1 (ENSOMYG00000009221)	aptx (ENSOMYG00000009236)	me2 (ENSOMYG00000010461)
Salmo	ANCESTRAL SPECIES	85	ENSGT00950000182888.b.f	ENSGT00940000166999.A	ENSGT00910000144273.c	ENSGT00940000159527.s.a	ENSGT00550000074919	ENSGT00990000211609.b	ENSGT00940000154702.b	ENSGT01090000260440.a.a	ENSGT00940000156044	ENSGT00390000002024	ENSGT00940000164807.A.h.a.b.b.b.b.b.b	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.r #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26
Atlantic salmon	MODERN SPECIES	16	wdr31 (ENSSSAG00000094814)	gak (ENSSSAG00000072796)	ENSSSAG00000075563	ENSSSAG00000075593	ENSSSAG00000071530	ENSSSAG00000071555	TMEM132C (ENSSSAG00000075587)	aacs (ENSSSAG00000076264)	bri3bp (ENSSSAG00000076253)	ENSSSAG00000109328	lifra (ENSSSAG00000075601)	spef2 (ENSSSAG00000076247) #14	lmbrd2a (ENSSSAG00000075849) #17	ENSSSAG00000101505	slc1a3a (ENSSSAG00000075770) #21	nipbla (ENSSSAG00000075753) #22	ndc80 (ENSSSAG00000075612)	ENSSSAG00000075746	ENSSSAG00000071537	ENSSSAG00000075744 #26	ENSSSAG00000075690 #27	opn4xb (ENSSSAG00000075477)	pdlim5a (ENSSSAG00000075509)	bmpr1ba (ENSSSAG00000075538)	ENSSSAG00000111944	UNC5C (ENSSSAG00000075774)	stpg2 (ENSSSAG00000075952)	MEX3C (ENSSSAG00000115744)	SMAD4 (ENSSSAG00000075963)	me2 (ENSSSAG00000092707)	ENSSSAG00000076206
River trout	MODERN SPECIES	19	wdr31 (ENSSTUG00000039016)	GAK (ENSSTUG00000038371)	HIRA (ENSSTUG00000038090)	ENSSTUG00000038072	ENSSTUG00000038071	ENSSTUG00000038050	TMEM132C (ENSSTUG00000037934)	aacs (ENSSTUG00000037699)	bri3bp (ENSSTUG00000037687)	ENSSTUG00000037675	lifra (ENSSTUG00000037577)	spef2 (ENSSTUG00000037430) #14	lmbrd2a (ENSSTUG00000036910) #17	ENSSTUG00000036895	slc1a3a (ENSSTUG00000036851) #21	nipbla (ENSSTUG00000036815) #22	ndc80 (ENSSTUG00000036721)	ndc80 (ENSSTUG00000036560)	GDNF (ENSSTUG00000036540) #26	EGFLAM (ENSSTUG00000036204) #27	opn4xb (ENSSTUG00000036157)	pdlim5a (ENSSTUG00000036059)	bmpr1ba (ENSSTUG00000035860)	ENSSTUG00000035850	UNC5C (ENSSTUG00000034129)	STPG2 (ENSSTUG00000034065)	MEX3C (ENSSTUG00000034058)	SMAD4 (ENSSTUG00000033858)	elac1 (ENSSTUG00000033819)	aptx (ENSSTUG00000033812)	me2 (ENSSTUG00000031924)
Acanthomorphata	ANCESTRAL SPECIES	48	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Cod	MODERN SPECIES	19	ENSGMOG00000032171	FRMD3 (ENSGMOG00000010103)	IDNK (ENSGMOG00000029637)	gkap1 (ENSGMOG00000010130)	ENSGMOG00000031877	zgc:136564 (ENSGMOG00000010172)	hnrnpk (ENSGMOG00000010184)	rmi1 (ENSGMOG00000010204)	SLC28A3 (ENSGMOG00000022907)	NTRK2 (ENSGMOG00000014238)	agtpbp1 (ENSGMOG00000009325)	naa35 (ENSGMOG00000009347)	GOLM1 (ENSGMOG00000009366)	lmbrd2a (ENSGMOG00000009378) #17	slc1a3a (ENSGMOG00000009390) #21	nipbla (ENSGMOG00000009395) #22	ENSGMOG00000009448	GDNF (ENSGMOG00000017806) #26	ENSGMOG00000009470 #27	opn4xb (ENSGMOG00000016679)	pdlim5a (ENSGMOG00000025231)	bmpr1ba (ENSGMOG00000005746)	UNC5C (ENSGMOG00000005768)	STPG2 (ENSGMOG00000005005)	ENSGMOG00000005060	ENSGMOG00000005069	ENSGMOG00000005096	VPS13A (ENSGMOG00000005126)	ENSGMOG00000032177	ENSGMOG00000020422	ENSGMOG00000025849
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00940000169432	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b
Ovalentaria	DUPLICATION
Ovalentaria	DUPLICATION
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00940000176177	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Burton s mouthbrooder	MODERN SPECIES	584						ddx54 (ENSHBUG00000022675)	RAB14 (ENSHBUG00000022562)	ABL1 (ENSHBUG00000022516)	exosc2 (ENSHBUG00000022437)	RIC1 (ENSHBUG00000022396)	ERMP1 (ENSHBUG00000022308)	oaz1b (ENSHBUG00000022196)	UHRF2 (ENSHBUG00000022178)	ENSHBUG00000022069	ENSHBUG00000022058 #22	ENSHBUG00000021949 #22	nup155 (ENSHBUG00000021934) #24	ENSHBUG00000021735	ENSHBUG00000021723	ARVCF (ENSHBUG00000021682)	BMP10 (ENSHBUG00000021667)	smad4a (ENSHBUG00000021658)	rfx3 (ENSHBUG00000021638)	glis3 (ENSHBUG00000021547)	UNC5C (ENSHBUG00000021530)	bmpr1bb (ENSHBUG00000021405)	pdlim5b (ENSHBUG00000021350)	opn4xa (ENSHBUG00000021264)
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00530000063811.B.b
P. nyererei	MODERN SPECIES	358					ddx54 (ENSPNYG00000007230)	ENSPNYG00000007302	RAB14 (ENSPNYG00000007314)	ABL1 (ENSPNYG00000007350)	exosc2 (ENSPNYG00000007383)	RIC1 (ENSPNYG00000007422)	ERMP1 (ENSPNYG00000007487)	oaz1b (ENSPNYG00000007528)	UHRF2 (ENSPNYG00000007607)	ENSPNYG00000007687	ENSPNYG00000007727 #22	ENSPNYG00000007841 #22	nup155 (ENSPNYG00000007870) #24	ENSPNYG00000008044	ENSPNYG00000008059	ARVCF (ENSPNYG00000008095)	BMP10 (ENSPNYG00000008119)	smad4a (ENSPNYG00000008130)	rfx3 (ENSPNYG00000008150)	glis3 (ENSPNYG00000008203)	UNC5C (ENSPNYG00000008247)	bmpr1bb (ENSPNYG00000008280)	pdlim5b (ENSPNYG00000008318)	opn4xa (ENSPNYG00000008343)	gdnfa (ENSPNYG00000008369) #26	WDR70 (ENSPNYG00000008394) #25	ENSPNYG00000008462
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00530000063811.B.b
Eastern happy	MODERN SPECIES	19	MED13L (ENSACLG00000012703)	tbx3a (ENSACLG00000013104)	tbx5a (ENSACLG00000013144)	ddx54 (ENSACLG00000013176)	RAB14 (ENSACLG00000013505)	ABL1 (ENSACLG00000013533)	exosc2 (ENSACLG00000013613)	RIC1 (ENSACLG00000013629)	ENSACLG00000013674	ERMP1 (ENSACLG00000013682)	oaz1b (ENSACLG00000013736)	UHRF2 (ENSACLG00000013761)	ENSACLG00000013855	MLANA (ENSACLG00000013936)	ENSACLG00000013956 #22	ENSACLG00000014104 #22	nup155 (ENSACLG00000014123) #24	ENSACLG00000014341	ENSACLG00000014347	ARVCF (ENSACLG00000014514)	BMP10 (ENSACLG00000014520)	smad4a (ENSACLG00000014529)	rfx3 (ENSACLG00000014557)	glis3 (ENSACLG00000014654)	UNC5C (ENSACLG00000014816)	ENSACLG00000014947	bmpr1bb (ENSACLG00000014953)	pdlim5b (ENSACLG00000015010)	opn4xa (ENSACLG00000015094)	gdnfa (ENSACLG00000015113) #26	WDR70 (ENSACLG00000015123) #25
Zebra mbuna	MODERN SPECIES	1110	tbx5a (ENSMZEG00005018829)	tbx3a (ENSMZEG00005018821)	MED13L (ENSMZEG00005018789)	MTFP1 (ENSMZEG00005018780)	ddx54 (ENSMZEG00005018773)	RAB14 (ENSMZEG00005018759)	ABL1 (ENSMZEG00005018744)	exosc2 (ENSMZEG00005018737)	RIC1 (ENSMZEG00005018724)	ERMP1 (ENSMZEG00005018708)	oaz1b (ENSMZEG00005018701)	UHRF2 (ENSMZEG00005018695)	KIAA2026 (ENSMZEG00005018687)	MLANA (ENSMZEG00005018684)	ENSMZEG00005018663 #22	ENSMZEG00005018651 #22	nup155 (ENSMZEG00005018634) #24	ENSMZEG00005018627	ENSMZEG00005018625	ARVCF (ENSMZEG00005018621)	BMP10 (ENSMZEG00005018620)	smad4a (ENSMZEG00005018613)	rfx3 (ENSMZEG00005018598)	glis3 (ENSMZEG00005018592)	UNC5C (ENSMZEG00005018566)	bmpr1bb (ENSMZEG00005018554)	pdlim5b (ENSMZEG00005018544)	opn4xa (ENSMZEG00005018537)	ENSMZEG00005018533	ENSMZEG00005018511	ENSMZEG00005018505
Midas cichlid	MODERN SPECIES	75	MTFP1 (ENSACIG00000019186)	ENSACIG00000019174	ENSACIG00000019151	tbx3a (ENSACIG00000019135)	tbx5a (ENSACIG00000019128)	ddx54 (ENSACIG00000019104)	rab14 (ENSACIG00000019091)	ABL1 (ENSACIG00000019070)	exosc2 (ENSACIG00000019054)	RIC1 (ENSACIG00000019017)	ERMP1 (ENSACIG00000018992)	oaz1b (ENSACIG00000018980)	UHRF2 (ENSACIG00000018947)	ENSACIG00000018906	ENSACIG00000018846 #22	ENSACIG00000018837 #22	nup155 (ENSACIG00000018799) #24	ENSACIG00000018793	ENSACIG00000018765	ARVCF (ENSACIG00000018628)	BMP10 (ENSACIG00000018609)	ENSACIG00000018604	smad4a (ENSACIG00000018584)	rfx3 (ENSACIG00000018552)	glis3 (ENSACIG00000018517)	UNC5C (ENSACIG00000018481)	bmpr1bb (ENSACIG00000018459)	pdlim5b (ENSACIG00000018322)	opn4xa (ENSACIG00000018281)
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000155596.q	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Turquoise killifish	MODERN SPECIES	1611	tbx3a (ENSNFUG00015019378)	tbx5a (ENSNFUG00015019377)	DDX54 (ENSNFUG00015019083)	RAB14L (ENSNFUG00015019053)	ABL1 (ENSNFUG00015019045)	exosc2 (ENSNFUG00015019038)	ENSNFUG00015019036	KIAA1432 (ENSNFUG00015018957)	ERMP1 (ENSNFUG00015018927)	ENSNFUG00015018925	oaz1b (ENSNFUG00015018922)	UHRF2 (ENSNFUG00015016249)	ENSNFUG00015016134	ENSNFUG00015016114	ENSNFUG00015016110	ENSNFUG00015015999 #22	nup155 (ENSNFUG00015015876) #24	ENSNFUG00015015867	ENSNFUG00015015853	ARVCFA (ENSNFUG00015015668)	BMP10 (ENSNFUG00015015646)	smad4a (ENSNFUG00015015586)	RFX3 (ENSNFUG00015015183)	ENSNFUG00015015164	glis3 (ENSNFUG00015015108)	ENSNFUG00015015101	UNC5C (ENSNFUG00015010709)	bmpr1bb (ENSNFUG00015010344)	ENSNFUG00015010321	ENSNFUG00015010313	opn4xa (ENSNFUG00015010269)
Mangrove rivulus	MODERN SPECIES	9	MTFP1 (ENSKMAG00000017702)	MED13L (ENSKMAG00000017631)	ENSKMAG00000017611	tbx3a (ENSKMAG00000017582)	tbx5a (ENSKMAG00000017563)	ddx54 (ENSKMAG00000017520)	rab14 (ENSKMAG00000017487)	ABL1 (ENSKMAG00000017451)	exosc2 (ENSKMAG00000017397)	RIC1 (ENSKMAG00000017324)	ERMP1 (ENSKMAG00000017295)	oaz1b (ENSKMAG00000017282)	ENSKMAG00000017205	KIAA2026 (ENSKMAG00000017182)	MLANA (ENSKMAG00000017168)	ENSKMAG00000017076 #22	zmynd19 (ENSKMAG00000017039)	bspry (ENSKMAG00000017015)	coq4 (ENSKMAG00000017001)	ENSKMAG00000016968	fbxw5 (ENSKMAG00000016939)	prdm12b (ENSKMAG00000016921)	fubp3 (ENSKMAG00000016886)	ASS1 (ENSKMAG00000016836)	surf4 (ENSKMAG00000016807)	surf2 (ENSKMAG00000016793)	bbln (ENSKMAG00000016786)	ENSKMAG00000016778	ENSKMAG00000016761	dnm1a (ENSKMAG00000016496)	golga2 (ENSKMAG00000016273)
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	22	lman2la (ENSXMAG00000005432)	MTFP1 (ENSXMAG00000022665)	MED13L (ENSXMAG00000005396)	tbx3a (ENSXMAG00000005372)	tbx5a (ENSXMAG00000005348)	ddx54 (ENSXMAG00000005312)	RAB14 (ENSXMAG00000005294)	ABL1 (ENSXMAG00000027567)	exosc2 (ENSXMAG00000005265)	RIC1 (ENSXMAG00000005243)	ERMP1 (ENSXMAG00000005226)	oaz1b (ENSXMAG00000028044)	UHRF2 (ENSXMAG00000005174)	ENSXMAG00000005170	ENSXMAG00000005171	ENSXMAG00000005119 #22	ENSXMAG00000030005 #22	nup155 (ENSXMAG00000005080) #24	ENSXMAG00000020021	ENSXMAG00000025194	ARVCF (ENSXMAG00000005070)	BMP10 (ENSXMAG00000005068)	smad4a (ENSXMAG00000005051)	rfx3 (ENSXMAG00000005015)	glis3 (ENSXMAG00000005013)	UNC5C (ENSXMAG00000001669)	bmpr1bb (ENSXMAG00000001635)	pdlim5b (ENSXMAG00000001628)	opn4xa (ENSXMAG00000001613)	gdnfa (ENSXMAG00000021439) #26	WDR70 (ENSXMAG00000001567) #25
Platyfish	MODERN SPECIES	22	MTFP1 (ENSXMAG00000022665)	MED13L (ENSXMAG00000005396)	tbx3a (ENSXMAG00000005372)	tbx5a (ENSXMAG00000005348)	ddx54 (ENSXMAG00000005312)	RAB14 (ENSXMAG00000005294)	ABL1 (ENSXMAG00000027567)	exosc2 (ENSXMAG00000005265)	RIC1 (ENSXMAG00000005243)	ERMP1 (ENSXMAG00000005226)	oaz1b (ENSXMAG00000028044)	UHRF2 (ENSXMAG00000005174)	ENSXMAG00000005170	ENSXMAG00000005171	ENSXMAG00000005119 #22	ENSXMAG00000030005 #22	nup155 (ENSXMAG00000005080) #24	ENSXMAG00000020021	ENSXMAG00000025194	ARVCF (ENSXMAG00000005070)	BMP10 (ENSXMAG00000005068)	smad4a (ENSXMAG00000005051)	rfx3 (ENSXMAG00000005015)	glis3 (ENSXMAG00000005013)	UNC5C (ENSXMAG00000001669)	bmpr1bb (ENSXMAG00000001635)	pdlim5b (ENSXMAG00000001628)	opn4xa (ENSXMAG00000001613)	gdnfa (ENSXMAG00000021439) #26	WDR70 (ENSXMAG00000001567) #25	FAM222A (ENSXMAG00000001561)
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Guppy	DUPLICATION
Guppy	MODERN SPECIES	442	wbp1 (ENSPREG00000014714)	lman2la (ENSPREG00000014686)	MTFP1 (ENSPREG00000014663)	MED13L (ENSPREG00000014561)	tbx3a (ENSPREG00000014513)	tbx5a (ENSPREG00000014440)	ddx54 (ENSPREG00000014372)	rab14 (ENSPREG00000014355)	ABL1 (ENSPREG00000014327)	exosc2 (ENSPREG00000014306)	RIC1 (ENSPREG00000014275)	ERMP1 (ENSPREG00000014257)	oaz1b (ENSPREG00000014246)	ENSPREG00000014220	ENSPREG00000014165	ENSPREG00000014082 #22	ENSPREG00000014052 #22	ENSPREG00000014046	nup155 (ENSPREG00000013997) #24	ENSPREG00000013943	ENSPREG00000013920	ARVCF (ENSPREG00000013892)	BMP10 (ENSPREG00000013876)	smad4a (ENSPREG00000013851)	rfx3 (ENSPREG00000013770)	glis3 (ENSPREG00000013743)	UNC5C (ENSPREG00000013711)	bmpr1bb (ENSPREG00000013685)	pdlim5b (ENSPREG00000013658)	opn4xa (ENSPREG00000013581)	gdnfa (ENSPREG00000013564) #26
Guppy	MODERN SPECIES	442	lman2la (ENSPREG00000014686)	MTFP1 (ENSPREG00000014663)	MED13L (ENSPREG00000014561)	tbx3a (ENSPREG00000014513)	tbx5a (ENSPREG00000014440)	ddx54 (ENSPREG00000014372)	rab14 (ENSPREG00000014355)	ABL1 (ENSPREG00000014327)	exosc2 (ENSPREG00000014306)	RIC1 (ENSPREG00000014275)	ERMP1 (ENSPREG00000014257)	oaz1b (ENSPREG00000014246)	ENSPREG00000014220	ENSPREG00000014165	ENSPREG00000014082 #22	ENSPREG00000014052 #22	ENSPREG00000014046	nup155 (ENSPREG00000013997) #24	ENSPREG00000013943	ENSPREG00000013920	ARVCF (ENSPREG00000013892)	BMP10 (ENSPREG00000013876)	smad4a (ENSPREG00000013851)	rfx3 (ENSPREG00000013770)	glis3 (ENSPREG00000013743)	UNC5C (ENSPREG00000013711)	bmpr1bb (ENSPREG00000013685)	pdlim5b (ENSPREG00000013658)	opn4xa (ENSPREG00000013581)	gdnfa (ENSPREG00000013564) #26	WDR70 (ENSPREG00000013539) #25
NAME_6	ANCESTRAL SPECIES	12	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00500000044904.a.b.e.a.l.d.b.a.b.a.a.a	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b.d	ENSGT00940000155919.b.b.c	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	103	ZNF462 (ENSPLAG00000004418)	RAD23B (ENSPLAG00000004424)	klf4 (ENSPLAG00000004432)	tbx3a (ENSPLAG00000004442)	tbx5a (ENSPLAG00000000814)	ENSPLAG00000004493	ddx54 (ENSPLAG00000004530)	RAB14 (ENSPLAG00000004551)	ABL1 (ENSPLAG00000004579)	exosc2 (ENSPLAG00000004605)	RIC1 (ENSPLAG00000004669)	ERMP1 (ENSPLAG00000004733)	oaz1b (ENSPLAG00000004747)	UHRF2 (ENSPLAG00000004783)	ENSPLAG00000004795	ENSPLAG00000004867 #22	ENSPLAG00000004889 #22	nup155 (ENSPLAG00000004934) #24	ENSPLAG00000004947	ENSPLAG00000004969	ARVCF (ENSPLAG00000005050)	BMP10 (ENSPLAG00000005066)	smad4a (ENSPLAG00000005111)	rfx3 (ENSPLAG00000005171)	glis3 (ENSPLAG00000005185)
Sailfin molly	MODERN SPECIES	103	RAD23B (ENSPLAG00000004424)	klf4 (ENSPLAG00000004432)	tbx3a (ENSPLAG00000004442)	tbx5a (ENSPLAG00000000814)	ENSPLAG00000004493	ddx54 (ENSPLAG00000004530)	RAB14 (ENSPLAG00000004551)	ABL1 (ENSPLAG00000004579)	exosc2 (ENSPLAG00000004605)	RIC1 (ENSPLAG00000004669)	ERMP1 (ENSPLAG00000004733)	oaz1b (ENSPLAG00000004747)	UHRF2 (ENSPLAG00000004783)	ENSPLAG00000004795	ENSPLAG00000004867 #22	ENSPLAG00000004889 #22	nup155 (ENSPLAG00000004934) #24	ENSPLAG00000004947	ENSPLAG00000004969	ARVCF (ENSPLAG00000005050)	BMP10 (ENSPLAG00000005066)	smad4a (ENSPLAG00000005111)	rfx3 (ENSPLAG00000005171)	glis3 (ENSPLAG00000005185)
Amazon molly	MODERN SPECIES	258	MTFP1 (ENSPFOG00000019826)	MED13L (ENSPFOG00000019825)	tbx3a (ENSPFOG00000024759)	tbx5a (ENSPFOG00000019824)	ENSPFOG00000019823	ddx54 (ENSPFOG00000019822)	RAB14 (ENSPFOG00000019821)	ABL1 (ENSPFOG00000019820)	exosc2 (ENSPFOG00000019819)	RIC1 (ENSPFOG00000019818)	ERMP1 (ENSPFOG00000019817)	oaz1b (ENSPFOG00000019816)	UHRF2 (ENSPFOG00000019815)	KIAA2026 (ENSPFOG00000019814)	MLANA (ENSPFOG00000019813)	ENSPFOG00000019812 #22	nup155 (ENSPFOG00000019811) #24	ENSPFOG00000019953	ENSPFOG00000019810	ARVCF (ENSPFOG00000019809)	BMP10 (ENSPFOG00000019808)	smad4a (ENSPFOG00000019807)	rfx3 (ENSPFOG00000019806)	glis3 (ENSPFOG00000019805)	UNC5C (ENSPFOG00000019804)	bmpr1bb (ENSPFOG00000019803)	bmpr1bb (ENSPFOG00000019802)	pdlim5b (ENSPFOG00000019801)	opn4xa (ENSPFOG00000019800)	gdnfa (ENSPFOG00000019799) #26	WDR70 (ENSPFOG00000019798) #25
NAME_4	ANCESTRAL SPECIES		ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00800000124150 #23
Mummichog	MODERN SPECIES	2260	MTFP1 (ENSFHEG00000018305)	MED13L (ENSFHEG00000018315)	ENSFHEG00000018326	tbx3a (ENSFHEG00000018347)	tbx5a (ENSFHEG00000018370)	ddx54 (ENSFHEG00000018425)	RAB14 (ENSFHEG00000018450)	ABL1 (ENSFHEG00000018524)	exosc2 (ENSFHEG00000018571)	RIC1 (ENSFHEG00000018706)	ERMP1 (ENSFHEG00000018835)	oaz1b (ENSFHEG00000018867)	UHRF2 (ENSFHEG00000018882)	ENSFHEG00000018962	ENSFHEG00000018991	ENSFHEG00000019424 #22	nup155 (ENSFHEG00000019546) #24	ENSFHEG00000019556	ENSFHEG00000019571	ARVCF (ENSFHEG00000019614)	BMP10 (ENSFHEG00000019628)	smad4a (ENSFHEG00000020053)	rfx3 (ENSFHEG00000020129)	glis3 (ENSFHEG00000020137)	UNC5C (ENSFHEG00000020244)	ENSFHEG00000020268	bmpr1bb (ENSFHEG00000020318)	pdlim5b (ENSFHEG00000020331)	opn4xa (ENSFHEG00000020381)	gdnfa (ENSFHEG00000020391) #26	WDR70 (ENSFHEG00000020484) #25
Sheepshead minnow	MODERN SPECIES	330			tbx3a (ENSCVAG00000022426)	tbx5a (ENSCVAG00000022411)	ddx54 (ENSCVAG00000022404)	rab14 (ENSCVAG00000022353)	ABL1 (ENSCVAG00000022319)	exosc2 (ENSCVAG00000022260)	RIC1 (ENSCVAG00000022235)	ERMP1 (ENSCVAG00000022152)	ENSCVAG00000022105	UHRF2 (ENSCVAG00000022094)	ENSCVAG00000022010	MLANA (ENSCVAG00000021976)	ENSCVAG00000021971	ENSCVAG00000021961 #22	nup155 (ENSCVAG00000021951) #24	ENSCVAG00000021874	ENSCVAG00000021863	ENSCVAG00000021850	BMP10 (ENSCVAG00000021830)	smad4a (ENSCVAG00000021820)	rfx3 (ENSCVAG00000021772)	ENSCVAG00000021725	UNC5C (ENSCVAG00000021696)	bmpr1bb (ENSCVAG00000021623)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25	ENSGT00530000063811.B.b
Japanese Medaka HdrR	MODERN SPECIES	3	lman2la (ENSORLG00000007255)	MTFP1 (ENSORLG00000007264)	MED13L (ENSORLG00000007298)	tbx3a (ENSORLG00000007316)	tbx5a (ENSORLG00000022701)	ddx54 (ENSORLG00000007385)	rab14 (ENSORLG00000007406)	ABL1 (ENSORLG00000007426)	exosc2 (ENSORLG00000007443)	RIC1 (ENSORLG00000007468)	ERMP1 (ENSORLG00000007495)	UHRF2 (ENSORLG00000007546)	oaz1b (ENSORLG00000007502)	ENSORLG00000026627	MLANA (ENSORLG00000007559)	ENSORLG00000007606 #22	nup155 (ENSORLG00000007635) #24	ENSORLG00000028358	ENSORLG00000007651	ARVCF (ENSORLG00000007658)	ENSORLG00000022833	smad4a (ENSORLG00000007703)	rfx3 (ENSORLG00000007747)	glis3 (ENSORLG00000007755)	UNC5C (ENSORLG00000007815)	bmpr1bb (ENSORLG00000007833)	pdlim5b (ENSORLG00000007854)	opn4xa (ENSORLG00000007864)	gdnfa (ENSORLG00000007873) #26	WDR70 (ENSORLG00000007897) #25	ENSORLG00000007923
Chinese medaka	MODERN SPECIES	489	wbp1 (ENSOSIG00000016467)	lman2la (ENSOSIG00000016469)	MTFP1 (ENSOSIG00000016497)	MED13L (ENSOSIG00000016571)	tbx3a (ENSOSIG00000019228)	tbx5a (ENSOSIG00000019232)	ddx54 (ENSOSIG00000000192)	rab14 (ENSOSIG00000000271)	ABL1 (ENSOSIG00000000316)	exosc2 (ENSOSIG00000000805)	RIC1 (ENSOSIG00000000883)	ERMP1 (ENSOSIG00000002812)	oaz1b (ENSOSIG00000002866)	UHRF2 (ENSOSIG00000002953)	ENSOSIG00000003071	ENSOSIG00000003125 #22	ENSOSIG00000005494	ENSOSIG00000005495	BMP10 (ENSOSIG00000005497)	smad4a (ENSOSIG00000005505)	rfx3 (ENSOSIG00000005600)	glis3 (ENSOSIG00000006026)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00390000010427.c.s.a #22	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Indian medaka	MODERN SPECIES	30	lman2la (ENSOMEG00000003804)	MTFP1 (ENSOMEG00000003760)	MED13L (ENSOMEG00000003740)	tbx3a (ENSOMEG00000003704)	tbx5a (ENSOMEG00000003688)	ddx54 (ENSOMEG00000003663)	rab14 (ENSOMEG00000003623)	ABL1 (ENSOMEG00000003602)	exosc2 (ENSOMEG00000003533)	RIC1 (ENSOMEG00000003478)	ERMP1 (ENSOMEG00000003427)	oaz1b (ENSOMEG00000003395)	UHRF2 (ENSOMEG00000003365)	ENSOMEG00000003312	ENSOMEG00000003288	ENSOMEG00000003269 #22	ENSOMEG00000003253	nup155 (ENSOMEG00000003206) #24	ENSOMEG00000003115	ENSOMEG00000000956	ARVCF (ENSOMEG00000003081)	rfx3 (ENSOMEG00000003021)	BMP10 (ENSOMEG00000002990)	smad4a (ENSOMEG00000002982)	glis3 (ENSOMEG00000002935)	UNC5C (ENSOMEG00000002886)	bmpr1bb (ENSOMEG00000002834)	pdlim5b (ENSOMEG00000000058)	opn4xa (ENSOMEG00000002798)	gdnfa (ENSOMEG00000002782) #26	WDR70 (ENSOMEG00000002766) #25
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a #22	ENSGT00940000176177	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00940000176177	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Nile tilapia	MODERN SPECIES	19	MTFP1 (ENSONIG00000041595)	MED13L (ENSONIG00000000189)	tbx3 (ENSONIG00000042332)	tbx5a (ENSONIG00000040090)	ddx54 (ENSONIG00000037082)	ddx54 (ENSONIG00000041332)	ddx54 (ENSONIG00000038587)	rab14 (ENSONIG00000036893)	ABL1 (ENSONIG00000014093)	exosc2 (ENSONIG00000014086)	RIC1 (ENSONIG00000014080)	ERMP1 (ENSONIG00000014077)	oaz1b (ENSONIG00000014076)	UHRF2 (ENSONIG00000014061)	ENSONIG00000014060	ENSONIG00000014053 #22	nup155 (ENSONIG00000014046) #24	ENSONIG00000020400	ENSONIG00000014045	ARVCF (ENSONIG00000014044)	BMP10 (ENSONIG00000039707)	smad4a (ENSONIG00000014036)	rfx3 (ENSONIG00000014034)	glis3 (ENSONIG00000014033)	UNC5C (ENSONIG00000014022)	bmpr1bb (ENSONIG00000014017)	pdlim5b (ENSONIG00000014011)	opn4xa (ENSONIG00000014009)	gdnfa (ENSONIG00000031992) #26	WDR70 (ENSONIG00000014001) #25	FAM222A (ENSONIG00000040639)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Lyretail cichlid	MODERN SPECIES	304	lman2la (ENSNBRG00000005853)	MTFP1 (ENSNBRG00000005835)	ENSNBRG00000005809	ENSNBRG00000005763	tbx3a (ENSNBRG00000005734)	tbx5a (ENSNBRG00000005703)	ddx54 (ENSNBRG00000005588)	RAB14 (ENSNBRG00000005542)	ABL1 (ENSNBRG00000005494)	exosc2 (ENSNBRG00000005453)	RIC1 (ENSNBRG00000005373)	ERMP1 (ENSNBRG00000005304)	oaz1b (ENSNBRG00000005283)	UHRF2 (ENSNBRG00000005231)	ENSNBRG00000005203	ENSNBRG00000004956 #22	ENSNBRG00000004934	nup155 (ENSNBRG00000004838) #24	ENSNBRG00000004824	ENSNBRG00000004787	ARVCF (ENSNBRG00000004752)	BMP10 (ENSNBRG00000004734)	smad4a (ENSNBRG00000004691)	rfx3 (ENSNBRG00000004632)	glis3 (ENSNBRG00000004595)	UNC5C (ENSNBRG00000004521)	bmpr1bb (ENSNBRG00000004491)	pdlim5b (ENSNBRG00000004476)	opn4xa (ENSNBRG00000004370)	gdnfa (ENSNBRG00000004334) #26	WDR70 (ENSNBRG00000004265) #25
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a	ENSGT00940000158066.p	ENSGT00940000156506.b	ENSGT00550000075100	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b #22	ENSGT00390000010427.c.s.a #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f	ENSGT00940000157435.a.b	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000155919.b.b	ENSGT00940000155292.db.b.a	ENSGT01100000263502.B.a.b.a	ENSGT00950000182993.A.b.e #26	ENSGT00390000015433 #25
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005018849	tbx5a (ENSMZEG00005018829)	tbx3a (ENSMZEG00005018821)	MED13L (ENSMZEG00005018789)	MTFP1 (ENSMZEG00005018780)	ddx54 (ENSMZEG00005018773)	RAB14 (ENSMZEG00005018759)	ABL1 (ENSMZEG00005018744)	exosc2 (ENSMZEG00005018737)	RIC1 (ENSMZEG00005018724)	ERMP1 (ENSMZEG00005018708)	oaz1b (ENSMZEG00005018701)	UHRF2 (ENSMZEG00005018695)	KIAA2026 (ENSMZEG00005018687)	MLANA (ENSMZEG00005018684)	ENSMZEG00005018663 #22	ENSMZEG00005018651 #22	nup155 (ENSMZEG00005018634) #24	ENSMZEG00005018627	ENSMZEG00005018625	ARVCF (ENSMZEG00005018621)	BMP10 (ENSMZEG00005018620)	smad4a (ENSMZEG00005018613)	rfx3 (ENSMZEG00005018598)	glis3 (ENSMZEG00005018592)	UNC5C (ENSMZEG00005018566)	bmpr1bb (ENSMZEG00005018554)	pdlim5b (ENSMZEG00005018544)	opn4xa (ENSMZEG00005018537)	ENSMZEG00005018533	ENSMZEG00005018511
Eastern happy	MODERN SPECIES	19	MTFP1 (ENSACLG00000012678)	MED13L (ENSACLG00000012703)	tbx3a (ENSACLG00000013104)	tbx5a (ENSACLG00000013144)	ddx54 (ENSACLG00000013176)	RAB14 (ENSACLG00000013505)	ABL1 (ENSACLG00000013533)	exosc2 (ENSACLG00000013613)	RIC1 (ENSACLG00000013629)	ENSACLG00000013674	ERMP1 (ENSACLG00000013682)	oaz1b (ENSACLG00000013736)	UHRF2 (ENSACLG00000013761)	ENSACLG00000013855	MLANA (ENSACLG00000013936)	ENSACLG00000013956 #22	ENSACLG00000014104 #22	nup155 (ENSACLG00000014123) #24	ENSACLG00000014341	ENSACLG00000014347	ARVCF (ENSACLG00000014514)	BMP10 (ENSACLG00000014520)	smad4a (ENSACLG00000014529)	rfx3 (ENSACLG00000014557)	glis3 (ENSACLG00000014654)	UNC5C (ENSACLG00000014816)	ENSACLG00000014947	bmpr1bb (ENSACLG00000014953)	pdlim5b (ENSACLG00000015010)	opn4xa (ENSACLG00000015094)	gdnfa (ENSACLG00000015113) #26
P. nyererei	MODERN SPECIES	358						ddx54 (ENSPNYG00000007230)	ENSPNYG00000007302	RAB14 (ENSPNYG00000007314)	ABL1 (ENSPNYG00000007350)	exosc2 (ENSPNYG00000007383)	RIC1 (ENSPNYG00000007422)	ERMP1 (ENSPNYG00000007487)	oaz1b (ENSPNYG00000007528)	UHRF2 (ENSPNYG00000007607)	ENSPNYG00000007687	ENSPNYG00000007727 #22	ENSPNYG00000007841 #22	nup155 (ENSPNYG00000007870) #24	ENSPNYG00000008044	ENSPNYG00000008059	ARVCF (ENSPNYG00000008095)	BMP10 (ENSPNYG00000008119)	smad4a (ENSPNYG00000008130)	rfx3 (ENSPNYG00000008150)	glis3 (ENSPNYG00000008203)	UNC5C (ENSPNYG00000008247)	bmpr1bb (ENSPNYG00000008280)	pdlim5b (ENSPNYG00000008318)	opn4xa (ENSPNYG00000008343)	gdnfa (ENSPNYG00000008369) #26	WDR70 (ENSPNYG00000008394) #25
Burton s mouthbrooder	MODERN SPECIES	584							ddx54 (ENSHBUG00000022675)	RAB14 (ENSHBUG00000022562)	ABL1 (ENSHBUG00000022516)	exosc2 (ENSHBUG00000022437)	RIC1 (ENSHBUG00000022396)	ERMP1 (ENSHBUG00000022308)	oaz1b (ENSHBUG00000022196)	UHRF2 (ENSHBUG00000022178)	ENSHBUG00000022069	ENSHBUG00000022058 #22	ENSHBUG00000021949 #22	nup155 (ENSHBUG00000021934) #24	ENSHBUG00000021735	ENSHBUG00000021723	ARVCF (ENSHBUG00000021682)	BMP10 (ENSHBUG00000021667)	smad4a (ENSHBUG00000021658)	rfx3 (ENSHBUG00000021638)	glis3 (ENSHBUG00000021547)	UNC5C (ENSHBUG00000021530)	bmpr1bb (ENSHBUG00000021405)	pdlim5b (ENSHBUG00000021350)	opn4xa (ENSHBUG00000021264)
Midas cichlid	MODERN SPECIES	75	lman2la (ENSACIG00000019194)	MTFP1 (ENSACIG00000019186)	ENSACIG00000019174	ENSACIG00000019151	tbx3a (ENSACIG00000019135)	tbx5a (ENSACIG00000019128)	ddx54 (ENSACIG00000019104)	rab14 (ENSACIG00000019091)	ABL1 (ENSACIG00000019070)	exosc2 (ENSACIG00000019054)	RIC1 (ENSACIG00000019017)	ERMP1 (ENSACIG00000018992)	oaz1b (ENSACIG00000018980)	UHRF2 (ENSACIG00000018947)	ENSACIG00000018906	ENSACIG00000018846 #22	ENSACIG00000018837 #22	nup155 (ENSACIG00000018799) #24	ENSACIG00000018793	ENSACIG00000018765	ARVCF (ENSACIG00000018628)	BMP10 (ENSACIG00000018609)	ENSACIG00000018604	smad4a (ENSACIG00000018584)	rfx3 (ENSACIG00000018552)	glis3 (ENSACIG00000018517)	UNC5C (ENSACIG00000018481)	bmpr1bb (ENSACIG00000018459)	pdlim5b (ENSACIG00000018322)	opn4xa (ENSACIG00000018281)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504.c #27	ENSGT00940000158504.b #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b
Burton s mouthbrooder	MODERN SPECIES	283	ENSHBUG00000010312	gkap1 (ENSHBUG00000010291)	ENSHBUG00000010278	zgc:136564 (ENSHBUG00000010269)	ENSHBUG00000010266	hnrnpk (ENSHBUG00000010255)	rmi1 (ENSHBUG00000010243)	SLC28A3 (ENSHBUG00000010235)	NTRK2 (ENSHBUG00000010215)	agtpbp1 (ENSHBUG00000010183)	naa35 (ENSHBUG00000010050)	ENSHBUG00000009949	GOLM1 (ENSHBUG00000009920)	lmbrd2a (ENSHBUG00000009907) #17	slc1a3a (ENSHBUG00000009870) #21	nipbla (ENSHBUG00000009817) #22	ndc80 (ENSHBUG00000000244)	ENSHBUG00000009535	EGFLAM (ENSHBUG00000009496) #27	si:dkey-251i10.2 (ENSHBUG00000009309)	opn4xb (ENSHBUG00000009296)	pdlim5a (ENSHBUG00000009250)	bmpr1ba (ENSHBUG00000009202)	UNC5C (ENSHBUG00000009151)	STPG2 (ENSHBUG00000009016)	bri3bp (ENSHBUG00000008999)	wdr31 (ENSHBUG00000008981)	ENSHBUG00000008963	vps13a (ENSHBUG00000008919)	GNA14 (ENSHBUG00000008725)	ENSHBUG00000008707
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504.c #27	ENSGT00940000179796	ENSGT00940000158504.b #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w
P. nyererei	MODERN SPECIES	301	ENSPNYG00000010773	gkap1 (ENSPNYG00000010792)	ENSPNYG00000010805	ENSPNYG00000010817	zgc:136564 (ENSPNYG00000010829)	hnrnpk (ENSPNYG00000010838)	rmi1 (ENSPNYG00000010885)	SLC28A3 (ENSPNYG00000010923)	NTRK2 (ENSPNYG00000011160)	agtpbp1 (ENSPNYG00000011207)	naa35 (ENSPNYG00000011313)	ENSPNYG00000011366	GOLM1 (ENSPNYG00000011379)	lmbrd2a (ENSPNYG00000011403) #17	slc1a3a (ENSPNYG00000011482) #21	nipbla (ENSPNYG00000011546) #22	ndc80 (ENSPNYG00000011801)	GDNF (ENSPNYG00000011827) #26	EGFLAM (ENSPNYG00000011856) #27	ENSPNYG00000011921	opn4xb (ENSPNYG00000011934)	ENSPNYG00000011959	ENSPNYG00000011972	pdlim5a (ENSPNYG00000011978)	bmpr1ba (ENSPNYG00000012001)	UNC5C (ENSPNYG00000012038)	STPG2 (ENSPNYG00000012085)	bri3bp (ENSPNYG00000012122)	wdr31 (ENSPNYG00000012137)	ENSPNYG00000012168	GNA14 (ENSPNYG00000012201)
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504.c #27	ENSGT00940000179796	ENSGT00940000158504.b #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.w
Eastern happy	MODERN SPECIES	3	gkap1 (ENSACLG00000018078)	ENSACLG00000018107	KIF27 (ENSACLG00000018127)	zgc:136564 (ENSACLG00000018161)	ENSACLG00000018206	hnrnpk (ENSACLG00000018220)	rmi1 (ENSACLG00000018298)	SLC28A3 (ENSACLG00000018317)	NTRK2 (ENSACLG00000018347)	agtpbp1 (ENSACLG00000018458)	naa35 (ENSACLG00000018692)	ENSACLG00000018840	ENSACLG00000018855	lmbrd2a (ENSACLG00000018868) #17	slc1a3a (ENSACLG00000018890) #21	nipbla (ENSACLG00000018935) #22	ndc80 (ENSACLG00000019225)	GDNF (ENSACLG00000019329) #26	EGFLAM (ENSACLG00000019344) #27	si:dkey-251i10.2 (ENSACLG00000019456)	opn4xb (ENSACLG00000019486)	GDNF (ENSACLG00000019522) #26	EGFLAM (ENSACLG00000019536) #27	ENSACLG00000019601	opn4xb (ENSACLG00000019622)	pdlim5a (ENSACLG00000019648)	bmpr1ba (ENSACLG00000019659)	UNC5C (ENSACLG00000019732)	STPG2 (ENSACLG00000019810)	bri3bp (ENSACLG00000019833)	wdr31 (ENSACLG00000019840)
Zebra mbuna	MODERN SPECIES	105															slc1a3a (ENSMZEG00005027482) #21	nipbla (ENSMZEG00005027480) #22	ndc80 (ENSMZEG00005027477)	ENSMZEG00005027475 #26	EGFLAM (ENSMZEG00005027473) #27	si:dkey-251i10.2 (ENSMZEG00005027472)	opn4xb (ENSMZEG00005027471)	pdlim5a (ENSMZEG00005027470)	bmpr1ba (ENSMZEG00005027469)	UNC5C (ENSMZEG00005027467)
Lyretail cichlid	MODERN SPECIES	306	ENSNBRG00000012262	ENSNBRG00000012246	gkap1 (ENSNBRG00000012231)	ENSNBRG00000012221	zgc:136564 (ENSNBRG00000012207)	hnrnpk (ENSNBRG00000012167)	rmi1 (ENSNBRG00000012155)	SLC28A3 (ENSNBRG00000011891)	ENSNBRG00000011822	NTRK2 (ENSNBRG00000011797)	agtpbp1 (ENSNBRG00000011767)	naa35 (ENSNBRG00000011638)	ENSNBRG00000011625	lmbrd2a (ENSNBRG00000011591) #17	slc1a3a (ENSNBRG00000011536) #21	nipbla (ENSNBRG00000011262) #22	ndc80 (ENSNBRG00000011167)	ENSNBRG00000011142 #26	EGFLAM (ENSNBRG00000011085) #27	si:dkey-251i10.2 (ENSNBRG00000011053)	opn4xb (ENSNBRG00000011027)	ENSNBRG00000011016	ENSNBRG00000011003	ENSNBRG00000010994	bmpr1ba (ENSNBRG00000010966)	UNC5C (ENSNBRG00000010924)	STPG2 (ENSNBRG00000010845)	bri3bp (ENSNBRG00000010826)	wdr31 (ENSNBRG00000010801)	gnaq (ENSNBRG00000010770)	ENSNBRG00000010758
Nile tilapia	MODERN SPECIES	3	gkap1 (ENSONIG00000015010)	ENSONIG00000042634	KIF27 (ENSONIG00000015008)	zgc:136564 (ENSONIG00000015007)	hnrnpk (ENSONIG00000015002)	rmi1 (ENSONIG00000015001)	SLC28A3 (ENSONIG00000014999)	ENSONIG00000038512	NTRK2 (ENSONIG00000014990)	agtpbp1 (ENSONIG00000014987)	naa35 (ENSONIG00000014983)	ENSONIG00000014980	GOLM1 (ENSONIG00000014976)	lmbrd2a (ENSONIG00000014975) #17	slc1a3a (ENSONIG00000014971) #21	nipbla (ENSONIG00000014956) #22	ndc80 (ENSONIG00000014951)	ENSONIG00000027207 #26	EGFLAM (ENSONIG00000014949) #27	si:dkey-251i10.2 (ENSONIG00000041106)	opn4xb (ENSONIG00000014946)	pdlim5a (ENSONIG00000014932)	ENSONIG00000029476	UNC5C (ENSONIG00000014925)	ENSONIG00000014922	bri3bp (ENSONIG00000014921)	ENSONIG00000028933	wdr31 (ENSONIG00000014919)	ENSONIG00000014912	GNA14 (ENSONIG00000037957)	vps13a (ENSONIG00000014896)
Midas cichlid	MODERN SPECIES	630	gkap1 (ENSACIG00000005379)	ENSACIG00000005370	ENSACIG00000005360	zgc:136564 (ENSACIG00000005341)	hnrnpk (ENSACIG00000005320)	rmi1 (ENSACIG00000005305)	SLC28A3 (ENSACIG00000005103)	ENSACIG00000005078	NTRK2 (ENSACIG00000005047)	agtpbp1 (ENSACIG00000005005)	naa35 (ENSACIG00000004957)	ENSACIG00000004948	GOLM1 (ENSACIG00000004926)	lmbrd2a (ENSACIG00000004828) #17	slc1a3a (ENSACIG00000004802) #21	nipbla (ENSACIG00000004615) #22	ndc80 (ENSACIG00000004570)	GDNF (ENSACIG00000004542) #26	EGFLAM (ENSACIG00000004487) #27	si:dkey-251i10.2 (ENSACIG00000004467)	opn4xb (ENSACIG00000004440)	pdlim5a (ENSACIG00000004356)	bmpr1ba (ENSACIG00000004333)	UNC5C (ENSACIG00000004303)	STPG2 (ENSACIG00000004203)	bri3bp (ENSACIG00000004184)	wdr31 (ENSACIG00000004157)	ENSACIG00000004132	GNA14 (ENSACIG00000004108)	vps13a (ENSACIG00000003169)	ENSACIG00000003104
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Bicolor damselfish	DUPLICATION
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	757											ENSSPAG00000005273	ENSSPAG00000005261	oaz1b (ENSSPAG00000005232)	UHRF2 (ENSSPAG00000005157)	ENSSPAG00000005127	ENSSPAG00000005021 #22	ENSSPAG00000005007 #22	nup155 (ENSSPAG00000004883) #24	ENSSPAG00000004867	ENSSPAG00000004838	ARVCF (ENSSPAG00000004656)	BMP10 (ENSSPAG00000004631)	smad4a (ENSSPAG00000004597)	rfx3 (ENSSPAG00000004491)	glis3 (ENSSPAG00000004451)
Bicolor damselfish	MODERN SPECIES	757										ENSSPAG00000005273	ENSSPAG00000005261	oaz1b (ENSSPAG00000005232)	UHRF2 (ENSSPAG00000005157)	ENSSPAG00000005127	ENSSPAG00000005021 #22	ENSSPAG00000005007 #22	nup155 (ENSSPAG00000004883) #24	ENSSPAG00000004867	ENSSPAG00000004838	ARVCF (ENSSPAG00000004656)	BMP10 (ENSSPAG00000004631)	smad4a (ENSSPAG00000004597)	rfx3 (ENSSPAG00000004491)	glis3 (ENSSPAG00000004451)
Bicolor damselfish	MODERN SPECIES	852															slc1a3a (ENSSPAG00000009508) #21	nipbla (ENSSPAG00000009547) #22	ndc80 (ENSSPAG00000009703)	ENSSPAG00000009766 #26	EGFLAM (ENSSPAG00000009781) #27	si:dkey-251i10.2 (ENSSPAG00000009829)	opn4xb (ENSSPAG00000009841)	pdlim5a (ENSSPAG00000009879)	bmpr1ba (ENSSPAG00000009973)	ENSSPAG00000010014
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386.w	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A	ENSGT00940000161970
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	37	lman2la (ENSAPOG00000008137)	MTFP1 (ENSAPOG00000000692)	MED13L (ENSAPOG00000008309)	tbx3a (ENSAPOG00000008347)	tbx5a (ENSAPOG00000008497)	ddx54 (ENSAPOG00000008602)	rab14 (ENSAPOG00000008641)	ABL1 (ENSAPOG00000008719)	exosc2 (ENSAPOG00000008861)	RIC1 (ENSAPOG00000009018)	ERMP1 (ENSAPOG00000009111)	oaz1b (ENSAPOG00000001045)	UHRF2 (ENSAPOG00000009269)	ENSAPOG00000009289	ENSAPOG00000009378	ENSAPOG00000010172 #22	nup155 (ENSAPOG00000010371) #24	ENSAPOG00000010383	ENSAPOG00000010409	ARVCF (ENSAPOG00000010422)	BMP10 (ENSAPOG00000010442)	smad4a (ENSAPOG00000010474)	rfx3 (ENSAPOG00000010514)	glis3 (ENSAPOG00000010551)	UNC5C (ENSAPOG00000010638)	bmpr1bb (ENSAPOG00000010718)	pdlim5b (ENSAPOG00000010737)	opn4xa (ENSAPOG00000010751)	apoda.1 (ENSAPOG00000010820)
Spiny chromis	MODERN SPECIES	352	CSDC2 (ENSAPOG00000000741)	PMM1 (ENSAPOG00000011372)	UBQLN1 (ENSAPOG00000011326)	gkap1 (ENSAPOG00000011300)	KIF27 (ENSAPOG00000011227)	hnrnpk (ENSAPOG00000011203)	rmi1 (ENSAPOG00000011168)	SLC28A3 (ENSAPOG00000011157)	NTRK2 (ENSAPOG00000011099)	agtpbp1 (ENSAPOG00000011043)	naa35 (ENSAPOG00000010901)	ENSAPOG00000010804	ENSAPOG00000010785	lmbrd2a (ENSAPOG00000010775) #17	slc1a3a (ENSAPOG00000000304) #21	nipbla (ENSAPOG00000010703) #22	ndc80 (ENSAPOG00000010653)
Amphiprion	ANCESTRAL SPECIES	10	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386.w	ENSGT00950000182993.A.b.f #26	ENSGT00940000182521	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	691											ERMP1 (ENSAOCG00000020016)	oaz1b (ENSAOCG00000020112)	UHRF2 (ENSAOCG00000020185)	KIAA2026 (ENSAOCG00000020212)	MLANA (ENSAOCG00000020231)	ENSAOCG00000020727 #22	nup155 (ENSAOCG00000020970) #24	ENSAOCG00000020992
Clown anemonefish	MODERN SPECIES	1572									RASEF (ENSAOCG00000011464)	agtpbp1 (ENSAOCG00000011583)	naa35 (ENSAOCG00000011789)	ENSAOCG00000011828	GOLM1 (ENSAOCG00000011856)	lmbrd2a (ENSAOCG00000011939) #17	slc1a3a (ENSAOCG00000011994) #21	nipbla (ENSAOCG00000012256) #22	ndc80 (ENSAOCG00000012311)	GDNF (ENSAOCG00000012335) #26	ENSAOCG00000012356	EGFLAM (ENSAOCG00000012444) #27	opn4xb (ENSAOCG00000012763)	pdlim5a (ENSAOCG00000012877)	bmpr1ba (ENSAOCG00000012934)
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	7	lman2la (ENSAPEG00000014593)	MTFP1 (ENSAPEG00000014577)	MED13L (ENSAPEG00000014442)	tbx3a (ENSAPEG00000014398)	tbx5a (ENSAPEG00000014372)	ddx54 (ENSAPEG00000014287)	rab14 (ENSAPEG00000014246)	ABL1 (ENSAPEG00000014156)	exosc2 (ENSAPEG00000014088)	RIC1 (ENSAPEG00000013948)	ERMP1 (ENSAPEG00000013820)	oaz1b (ENSAPEG00000013799)	UHRF2 (ENSAPEG00000013724)	KIAA2026 (ENSAPEG00000013675)	MLANA (ENSAPEG00000013661)	ENSAPEG00000013035 #22	nup155 (ENSAPEG00000012883) #24	ENSAPEG00000012876	ENSAPEG00000012806	ARVCF (ENSAPEG00000012790)	BMP10 (ENSAPEG00000012780)	smad4a (ENSAPEG00000012744)	rfx3 (ENSAPEG00000012681)	glis3 (ENSAPEG00000012665)	ENSAPEG00000012519	UNC5C (ENSAPEG00000012460)	bmpr1bb (ENSAPEG00000012440)	pdlim5b (ENSAPEG00000012414)	opn4xa (ENSAPEG00000012350)	gdnfa (ENSAPEG00000012340) #26	WDR70 (ENSAPEG00000012274) #25
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	19	IDNK (ENSAPEG00000003410)	ENSAPEG00000003383	gkap1 (ENSAPEG00000003303)	ENSAPEG00000003264	ENSAPEG00000003234	zgc:136564 (ENSAPEG00000003210)	hnrnpk (ENSAPEG00000003191)	rmi1 (ENSAPEG00000003178)	SLC28A3 (ENSAPEG00000003122)	NTRK2 (ENSAPEG00000003079)	agtpbp1 (ENSAPEG00000003001)	naa35 (ENSAPEG00000002899)	GOLM1 (ENSAPEG00000002886)	lmbrd2a (ENSAPEG00000002849) #17	slc1a3a (ENSAPEG00000002796) #21	nipbla (ENSAPEG00000001543) #22	ENSAPEG00000001447 #22	ndc80 (ENSAPEG00000001431)	GDNF (ENSAPEG00000001418) #26	ENSAPEG00000001374	EGFLAM (ENSAPEG00000001264) #27	opn4xb (ENSAPEG00000001219)	ENSAPEG00000001213	pdlim5a (ENSAPEG00000001184)	ENSAPEG00000001170	bmpr1ba (ENSAPEG00000001141)	UNC5C (ENSAPEG00000001042)	STPG2 (ENSAPEG00000001001)	bri3bp (ENSAPEG00000000978)	wdr31 (ENSAPEG00000000956)	ENSAPEG00000000924
Orange clownfish	MODERN SPECIES	19	ENSAPEG00000003383	gkap1 (ENSAPEG00000003303)	ENSAPEG00000003264	ENSAPEG00000003234	zgc:136564 (ENSAPEG00000003210)	hnrnpk (ENSAPEG00000003191)	rmi1 (ENSAPEG00000003178)	SLC28A3 (ENSAPEG00000003122)	NTRK2 (ENSAPEG00000003079)	agtpbp1 (ENSAPEG00000003001)	naa35 (ENSAPEG00000002899)	GOLM1 (ENSAPEG00000002886)	lmbrd2a (ENSAPEG00000002849) #17	slc1a3a (ENSAPEG00000002796) #21	nipbla (ENSAPEG00000001543) #22	ENSAPEG00000001447 #22	ndc80 (ENSAPEG00000001431)	GDNF (ENSAPEG00000001418) #26	ENSAPEG00000001374	EGFLAM (ENSAPEG00000001264) #27	opn4xb (ENSAPEG00000001219)	ENSAPEG00000001213	pdlim5a (ENSAPEG00000001184)	ENSAPEG00000001170	bmpr1ba (ENSAPEG00000001141)	UNC5C (ENSAPEG00000001042)	STPG2 (ENSAPEG00000001001)	bri3bp (ENSAPEG00000000978)	wdr31 (ENSAPEG00000000956)	ENSAPEG00000000924	GNA14 (ENSAPEG00000000874)
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b
Aplocheiloidei	ANCESTRAL SPECIES	24	ENSGT00940000158577	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Mangrove rivulus	MODERN SPECIES	26	FRMD3 (ENSKMAG00000021058)	IDNK (ENSKMAG00000021037)	gkap1 (ENSKMAG00000021021)	ENSKMAG00000021010	zgc:136564 (ENSKMAG00000021001)	KIF27 (ENSKMAG00000020967)	hnrnpk (ENSKMAG00000020943)	rmi1 (ENSKMAG00000020921)	SLC28A3 (ENSKMAG00000020902)	NTRK2 (ENSKMAG00000020873)	agtpbp1 (ENSKMAG00000020817)	naa35 (ENSKMAG00000020739)	GOLM1 (ENSKMAG00000020702)	lmbrd2a (ENSKMAG00000020659) #17	slc1a3a (ENSKMAG00000020629) #21	nipbla (ENSKMAG00000020533) #22	ndc80 (ENSKMAG00000020492)	ENSKMAG00000020480 #26	EGFLAM (ENSKMAG00000020383) #27	si:dkey-251i10.2 (ENSKMAG00000020340)	opn4xb (ENSKMAG00000020321)	pdlim5a (ENSKMAG00000020281)	bmpr1ba (ENSKMAG00000020249)	ENSKMAG00000020221	UNC5C (ENSKMAG00000020144)	STPG2 (ENSKMAG00000020110)	bri3bp (ENSKMAG00000020104)	wdr31 (ENSKMAG00000020089)	ENSKMAG00000020068	GNA14 (ENSKMAG00000020049)	vps13a (ENSKMAG00000019919)
Turquoise killifish	MODERN SPECIES	1627	IDNK (ENSNFUG00015016517)	ENSNFUG00015016511	gkap1 (ENSNFUG00015016499)	ENSNFUG00015016489	zgc:136564 (ENSNFUG00015016452)	HNRNPK (ENSNFUG00015016420)	RMI1 (ENSNFUG00015016412)	ENSNFUG00015016410	SLC28A3 (ENSNFUG00015016066)	NTRK2 (ENSNFUG00015015969)	AGTPBP1 (ENSNFUG00015015782)	NAA35 (ENSNFUG00015015683)	GOLM1 (ENSNFUG00015015655)	lmbrd2a (ENSNFUG00015015373) #17	SLC1A3A (ENSNFUG00015015252) #21	NIPBLA (ENSNFUG00015014878) #22	ndc80 (ENSNFUG00015014729)	ENSNFUG00015014707 #26	EGFLAM (ENSNFUG00015014310) #27	si:dkey-251i10.2 (ENSNFUG00015014257)	opn4xb (ENSNFUG00015014193)	ENSNFUG00015014181	pdlim5a (ENSNFUG00015014100)	ENSNFUG00015014064	BMPR1BA (ENSNFUG00015024795)	UNC5C (ENSNFUG00015024648)	ENSNFUG00015024619	BRI3BP (ENSNFUG00015024614)	wdr31 (ENSNFUG00015024602)	ENSNFUG00015024592	GNA14 (ENSNFUG00015024587)
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000156437	ENSGT00390000008742	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Poecilia	ANCESTRAL SPECIES	3	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A	ENSGT00940000161970
NAME_6	ANCESTRAL SPECIES	51	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510.ab	ENSGT00950000183083.a.d.b.cb	ENSGT00950000183083.a.d.b.bb	ENSGT00940000161259.A
Amazon molly	MODERN SPECIES	277	IDNK (ENSPFOG00000018882)	UBQLN1 (ENSPFOG00000018864)	gkap1 (ENSPFOG00000023536)	KIF27 (ENSPFOG00000018850)	zgc:136564 (ENSPFOG00000018840)	hnrnpk (ENSPFOG00000018830)	rmi1 (ENSPFOG00000018822)	SLC28A3 (ENSPFOG00000018815)	NTRK2 (ENSPFOG00000018778)	agtpbp1 (ENSPFOG00000018733)	naa35 (ENSPFOG00000018700)	ENSPFOG00000018691	GOLM1 (ENSPFOG00000018685)	lmbrd2a (ENSPFOG00000018671) #17	slc1a3a (ENSPFOG00000018655) #21	nipbla (ENSPFOG00000018626) #22	ndc80 (ENSPFOG00000018599)	ENSPFOG00000018588 #26	ENSPFOG00000018586 #26	EGFLAM (ENSPFOG00000018544) #27	si:dkey-251i10.2 (ENSPFOG00000018535)	opn4xb (ENSPFOG00000018528)	pdlim5a (ENSPFOG00000018515)	bmpr1ba (ENSPFOG00000018504)	UNC5C (ENSPFOG00000018451)	bri3bp (ENSPFOG00000018444)	wdr31 (ENSPFOG00000018436)	ENSPFOG00000018421	ENSPFOG00000022247	vps13a (ENSPFOG00000022370)	GNA14 (ENSPFOG00000018412)
Sailfin molly	MODERN SPECIES	580										NTRK2 (ENSPLAG00000017343)	agtpbp1 (ENSPLAG00000017354)	naa35 (ENSPLAG00000017406)	GOLM1 (ENSPLAG00000017416)	lmbrd2a (ENSPLAG00000017423) #17	slc1a3a (ENSPLAG00000018043) #21	nipbla (ENSPLAG00000018343) #22	ndc80 (ENSPLAG00000018383)	ENSPLAG00000018394 #26
Guppy	MODERN SPECIES	461	UBQLN1 (ENSPREG00000018871)	IDNK (ENSPREG00000018885)	gkap1 (ENSPREG00000018905)	KIF27 (ENSPREG00000018932)	zgc:136564 (ENSPREG00000018955)	hnrnpk (ENSPREG00000018996)	rmi1 (ENSPREG00000019082)	SLC28A3 (ENSPREG00000019163)	ENSPREG00000019197	agtpbp1 (ENSPREG00000019219)	naa35 (ENSPREG00000019309)	ENSPREG00000019409	GOLM1 (ENSPREG00000019416)	lmbrd2a (ENSPREG00000019428) #17	slc1a3a (ENSPREG00000019460) #21	nipbla (ENSPREG00000019501) #22	ndc80 (ENSPREG00000019564)	ENSPREG00000019596 #26	EGFLAM (ENSPREG00000019629) #27	si:dkey-251i10.2 (ENSPREG00000019750)	opn4xb (ENSPREG00000019759)	pdlim5a (ENSPREG00000019780)	pdlim5a (ENSPREG00000019825)	bmpr1ba (ENSPREG00000019872)	UNC5C (ENSPREG00000019925)	bri3bp (ENSPREG00000020029)	wdr31 (ENSPREG00000020036)	ENSPREG00000020048	GNA14 (ENSPREG00000020077)	vps13a (ENSPREG00000020130)	ENSPREG00000020459
Platyfish	MODERN SPECIES	3	scamp1 (ENSXMAG00000024922)	otpb (ENSXMAG00000016614)	ENSXMAG00000016619	ckmt2a (ENSXMAG00000016636)	rasgrf2b (ENSXMAG00000016680)	ENSXMAG00000022534	ENSXMAG00000025083	msh3 (ENSXMAG00000016720)	NTRK2 (ENSXMAG00000016744)	agtpbp1 (ENSXMAG00000016766)	naa35 (ENSXMAG00000016788)	ENSXMAG00000022545	GOLM1 (ENSXMAG00000016871)	lmbrd2a (ENSXMAG00000016875) #17	slc1a3a (ENSXMAG00000016896) #21	nipbla (ENSXMAG00000016926) #22	ndc80 (ENSXMAG00000017031)	GDNF (ENSXMAG00000027276) #26	EGFLAM (ENSXMAG00000017061) #27	ENSXMAG00000017087	opn4xb (ENSXMAG00000017088)	pdlim5a (ENSXMAG00000021636)	ENSXMAG00000021901	bmpr1ba (ENSXMAG00000017124)	UNC5C (ENSXMAG00000017169)	zgc:113274 (ENSXMAG00000027371)	bri3bp (ENSXMAG00000021682)	wdr31 (ENSXMAG00000017218)	ENSXMAG00000017236	GNA14 (ENSXMAG00000017274)	ENSXMAG00000020894
NAME_4	ANCESTRAL SPECIES	140	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00980000203448	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d
Sheepshead minnow	MODERN SPECIES	212	FRMD3 (ENSCVAG00000006189)	IDNK (ENSCVAG00000006217)	ENSCVAG00000006226	gkap1 (ENSCVAG00000006234)	ENSCVAG00000006237	zgc:136564 (ENSCVAG00000006263)	hnrnpk (ENSCVAG00000006278)	rmi1 (ENSCVAG00000006285)	NTRK2 (ENSCVAG00000006368)	agtpbp1 (ENSCVAG00000006415)	ENSCVAG00000006418	naa35 (ENSCVAG00000006514)	GOLM1 (ENSCVAG00000006527)	lmbrd2a (ENSCVAG00000006544) #17	slc1a3a (ENSCVAG00000006592) #21	nipbla (ENSCVAG00000006776) #22	ndc80 (ENSCVAG00000006787)	ENSCVAG00000006792 #26	EGFLAM (ENSCVAG00000006880) #27	si:dkey-251i10.2 (ENSCVAG00000006892)	opn4xb (ENSCVAG00000006900)	pdlim5a (ENSCVAG00000006974)	bmpr1ba (ENSCVAG00000007025)	UNC5C (ENSCVAG00000007070)	NXPE3 (ENSCVAG00000007081)	NXPE3 (ENSCVAG00000007090)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2492											ENSFHEG00000019333	ENSFHEG00000019314	ENSFHEG00000019290	lmbrd2a (ENSFHEG00000019274) #17	slc1a3a (ENSFHEG00000019156) #21	nipbla (ENSFHEG00000019038) #22	ENSFHEG00000016254 #22	ndc80 (ENSFHEG00000016249)	ENSFHEG00000016237 #26	EGFLAM (ENSFHEG00000016230) #27	si:dkey-251i10.2 (ENSFHEG00000016138)	opn4xb (ENSFHEG00000016106)	pdlim5a (ENSFHEG00000016057)	BMPR1B (ENSFHEG00000016031)	UNC5C (ENSFHEG00000016004)
Mummichog	MODERN SPECIES	2492										ENSFHEG00000019333	ENSFHEG00000019314	ENSFHEG00000019290	lmbrd2a (ENSFHEG00000019274) #17	slc1a3a (ENSFHEG00000019156) #21	nipbla (ENSFHEG00000019038) #22	ENSFHEG00000016254 #22	ndc80 (ENSFHEG00000016249)	ENSFHEG00000016237 #26	EGFLAM (ENSFHEG00000016230) #27	si:dkey-251i10.2 (ENSFHEG00000016138)	opn4xb (ENSFHEG00000016106)	pdlim5a (ENSFHEG00000016057)	BMPR1B (ENSFHEG00000016031)	UNC5C (ENSFHEG00000016004)
Oryzias	ANCESTRAL SPECIES	7	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a.b	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a.b	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A	ENSGT00940000161970
Chinese medaka	MODERN SPECIES	758	RASEF (ENSOSIG00000018530)	FRMD3 (ENSOSIG00000018556)	IDNK (ENSOSIG00000018931)	gkap1 (ENSOSIG00000018933)	ENSOSIG00000018934	zgc:136564 (ENSOSIG00000018935)	hnrnpk (ENSOSIG00000018939)	rmi1 (ENSOSIG00000018943)	SLC28A3 (ENSOSIG00000018947)	NTRK2 (ENSOSIG00000018960)	agtpbp1 (ENSOSIG00000018971)	naa35 (ENSOSIG00000018995)	ENSOSIG00000000746	GOLM1 (ENSOSIG00000000749)	slc1a3a (ENSOSIG00000000763) #21	nipbla (ENSOSIG00000000990) #22	ndc80 (ENSOSIG00000009785)	GDNF (ENSOSIG00000009789) #26	EGFLAM (ENSOSIG00000009800) #27	si:dkey-251i10.2 (ENSOSIG00000009818)	opn4xb (ENSOSIG00000009819)	ENSOSIG00000009821	pdlim5a (ENSOSIG00000009832)	bmpr1ba (ENSOSIG00000009840)	UNC5C (ENSOSIG00000010467)
Japanese Medaka HdrR	MODERN SPECIES	23	IDNK (ENSORLG00000028424)	ENSORLG00000028966	gkap1 (ENSORLG00000005111)	KIF27 (ENSORLG00000005126)	zgc:136564 (ENSORLG00000005140)	hnrnpk (ENSORLG00000005161)	rmi1 (ENSORLG00000005175)	SLC28A3 (ENSORLG00000005199)	NTRK2 (ENSORLG00000005227)	agtpbp1 (ENSORLG00000005317)	naa35 (ENSORLG00000025189)	ENSORLG00000022249	ENSORLG00000005362	GOLM1 (ENSORLG00000005368)	slc1a3a (ENSORLG00000005396) #21	nipbla (ENSORLG00000005446) #22	ndc80 (ENSORLG00000005465)	GDNF (ENSORLG00000023134) #26	EGFLAM (ENSORLG00000005499) #27	si:dkey-251i10.2 (ENSORLG00000005506)	opn4xb (ENSORLG00000005512)	pdlim5a (ENSORLG00000005537)	bmpr1ba (ENSORLG00000005565)	UNC5C (ENSORLG00000005617)	ENSORLG00000025953	bri3bp (ENSORLG00000005629)	wdr31 (ENSORLG00000005644)	ENSORLG00000005669	GNA14 (ENSORLG00000005681)	vps13a (ENSORLG00000005718)	ENSORLG00000023369
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a.b	ENSGT00390000009571.a.a.a	ENSGT00530000063675.b	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.t #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Javanese ricefish	MODERN SPECIES	23	RASEF (ENSOJAG00000023033)	FRMD3 (ENSOJAG00000005956)	IDNK (ENSOJAG00000006763)	ENSOJAG00000006770	gkap1 (ENSOJAG00000006779)	ENSOJAG00000006798	zgc:136564 (ENSOJAG00000006819)	hnrnpk (ENSOJAG00000006835)	rmi1 (ENSOJAG00000006873)	SLC28A3 (ENSOJAG00000006896)	NTRK2 (ENSOJAG00000006967)	naa35 (ENSOJAG00000007406)	ENSOJAG00000007510	GOLM1 (ENSOJAG00000007520)	slc1a3a (ENSOJAG00000007552) #21	nipbla (ENSOJAG00000007817) #22	ndc80 (ENSOJAG00000007933)	GDNF (ENSOJAG00000008045) #26	EGFLAM (ENSOJAG00000008092) #27	si:dkey-251i10.2 (ENSOJAG00000008423)	opn4xb (ENSOJAG00000008438)	pdlim5a (ENSOJAG00000008467)	bmpr1ba (ENSOJAG00000008506)	UNC5C (ENSOJAG00000009429)	ENSOJAG00000011229	bri3bp (ENSOJAG00000011235)	wdr31 (ENSOJAG00000011256)	ENSOJAG00000011329	GNA14 (ENSOJAG00000011364)	ENSOJAG00000011431	ENSOJAG00000012330
Indian medaka	MODERN SPECIES	11	ENSOMEG00000023518	gkap1 (ENSOMEG00000023537)	ENSOMEG00000023555	KIF27 (ENSOMEG00000023581)	zgc:136564 (ENSOMEG00000023598)	hnrnpk (ENSOMEG00000023618)	rmi1 (ENSOMEG00000023629)	SLC28A3 (ENSOMEG00000023640)	NTRK2 (ENSOMEG00000023654)	agtpbp1 (ENSOMEG00000023673)	naa35 (ENSOMEG00000023694)	ENSOMEG00000023700	ENSOMEG00000023707	GOLM1 (ENSOMEG00000023710)	slc1a3a (ENSOMEG00000023718) #21	nipbla (ENSOMEG00000000744) #22	ndc80 (ENSOMEG00000023750)	ENSOMEG00000023755 #26	EGFLAM (ENSOMEG00000023779) #27	si:dkey-251i10.2 (ENSOMEG00000023786)	opn4xb (ENSOMEG00000023798)	pdlim5a (ENSOMEG00000001351)	bmpr1ba (ENSOMEG00000001362)	UNC5C (ENSOMEG00000000007)	ENSOMEG00000000009	bri3bp (ENSOMEG00000000011)	wdr31 (ENSOMEG00000001382)	ENSOMEG00000001390	GNA14 (ENSOMEG00000001391)	ENSOMEG00000001394	ENSOMEG00000001399
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00390000008742	ENSGT00940000169432	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000159488	ENSGT00940000158577	ENSGT00390000003364	ENSGT00390000008742	ENSGT00940000169432	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b.a #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.c.b	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000178770
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	19	ARL3 (ENSTNIG00000009030)	wbp1 (ENSTNIG00000009031)	lman2la (ENSTNIG00000009032)	MED13L (ENSTNIG00000009034)	tbx3a (ENSTNIG00000009035)	tbx5a (ENSTNIG00000009036)	ddx54 (ENSTNIG00000009037)	ENSTNIG00000009038	rab14 (ENSTNIG00000009039)	ABL1 (ENSTNIG00000009040)	RIC1 (ENSTNIG00000009041)	ERMP1 (ENSTNIG00000009042)	oaz1b (ENSTNIG00000001544)	ENSTNIG00000009043	ENSTNIG00000009044	ENSTNIG00000009045 #22	nup155 (ENSTNIG00000009046) #24	ENSTNIG00000009047	ARVCF (ENSTNIG00000009048)	BMP10 (ENSTNIG00000009049)	smad4a (ENSTNIG00000009050)	rfx3 (ENSTNIG00000009051)	ENSTNIG00000009052	UNC5C (ENSTNIG00000009053)	bmpr1bb (ENSTNIG00000009054)	pdlim5b (ENSTNIG00000009055)	opn4xa (ENSTNIG00000009056)	gdnfa (ENSTNIG00000009057) #26	WDR70 (ENSTNIG00000009058) #25	ENSTNIG00000009059 #23	FAM222A (ENSTNIG00000009060)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002557	ENSTNIG00000002556	ENSTNIG00000002555	ENSTNIG00000001261	SYDE1 (ENSTNIG00000002546)	ENSTNIG00000002545	TECTA (ENSTNIG00000002539)	naif1 (ENSTNIG00000002538)	ENSTNIG00000002208	txnl1 (ENSTNIG00000002537)	ATP8B1 (ENSTNIG00000002536)	PDZD8 (ENSTNIG00000000196)	slc18a2 (ENSTNIG00000002535)	HCK (ENSTNIG00000002534)	ENSTNIG00000002471	ENSTNIG00000002470 #22	ENSTNIG00000002469	ENSTNIG00000002468	ENSTNIG00000000880	ENSTNIG00000001271	ARSD (ENSTNIG00000002458)	ENSTNIG00000002457	ENSTNIG00000001596	ENSTNIG00000002447	ENSTNIG00000002443	neurod4 (ENSTNIG00000002442)	ndrg2 (ENSTNIG00000002441)	fam98b (ENSTNIG00000002436)	ENSTNIG00000002434	socs4 (ENSTNIG00000018804)	ENSTNIG00000002431
Fugu	DUPLICATION
Fugu	MODERN SPECIES	18	MTFP1 (ENSTRUG00000021024)	MED13L (ENSTRUG00000015129)	ENSTRUG00000032869	tbx3a (ENSTRUG00000015097)	ddx54 (ENSTRUG00000014939)	rab14 (ENSTRUG00000032002)	ABL1 (ENSTRUG00000014808)	exosc2 (ENSTRUG00000022436)	RIC1 (ENSTRUG00000014728)	ERMP1 (ENSTRUG00000014672)	oaz1b (ENSTRUG00000014651)	ENSTRUG00000032035	UHRF2 (ENSTRUG00000014575)	ENSTRUG00000023033	ENSTRUG00000022114	ENSTRUG00000014488 #22	nup155 (ENSTRUG00000014297) #24	ENSTRUG00000020119	ENSTRUG00000021607	ARVCF (ENSTRUG00000014229)	BMP10 (ENSTRUG00000014185)	smad4a (ENSTRUG00000014045)	glis3 (ENSTRUG00000030406)	UNC5C (ENSTRUG00000013878)	ENSTRUG00000029487	ENSTRUG00000028974	BMP10 (ENSTRUG00000027837)	smad4a (ENSTRUG00000032526)	glis3 (ENSTRUG00000019777)	bmpr1bb (ENSTRUG00000013761)	pdlim5b (ENSTRUG00000013562)
Fugu	MODERN SPECIES	13	ENSTRUG00000027897	IDNK (ENSTRUG00000029238)	gkap1 (ENSTRUG00000011213)	ENSTRUG00000023266	ENSTRUG00000031226	zgc:136564 (ENSTRUG00000021195)	hnrnpk (ENSTRUG00000010659)	rmi1 (ENSTRUG00000010577)	SLC28A3 (ENSTRUG00000010280)	NTRK2 (ENSTRUG00000009674)	agtpbp1 (ENSTRUG00000009063)	naa35 (ENSTRUG00000008637)	GOLM1 (ENSTRUG00000024708)	lmbrd2a (ENSTRUG00000008373) #17	slc1a3a (ENSTRUG00000008176) #21	nipbla (ENSTRUG00000007260) #22	ndc80 (ENSTRUG00000006903)	ENSTRUG00000021031 #26	EGFLAM (ENSTRUG00000006503) #27	si:dkey-251i10.2 (ENSTRUG00000032943)	opn4xb (ENSTRUG00000030465)	pdlim5a (ENSTRUG00000005717)	EGFLAM (ENSTRUG00000026754) #27	si:dkey-251i10.2 (ENSTRUG00000028391)	opn4xb (ENSTRUG00000006369)	bmpr1ba (ENSTRUG00000005555)	UNC5C (ENSTRUG00000004833)	ENSTRUG00000020458	bri3bp (ENSTRUG00000028808)	wdr31 (ENSTRUG00000004563)	ENSTRUG00000020151
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Perciformes	ANCESTRAL SPECIES	6	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161970	ENSGT00940000173665
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	3	lman2la (ENSCLMG00005012868)	MTFP1 (ENSCLMG00005012870)	MED13L (ENSCLMG00005012872)	tbx3a (ENSCLMG00005012883)	tbx5a (ENSCLMG00005012885)	ddx54 (ENSCLMG00005001515)	rab14 (ENSCLMG00005002289)	ABL1 (ENSCLMG00005002301)	exosc2 (ENSCLMG00005002457)	RIC1 (ENSCLMG00005002458)	ERMP1 (ENSCLMG00005002477)	oaz1b (ENSCLMG00005002514)	UHRF2 (ENSCLMG00005002519)	ENSCLMG00005002561	ENSCLMG00005002563	ENSCLMG00005002624 #22	nup155 (ENSCLMG00005013612) #24	ENSCLMG00005013613	ENSCLMG00005013615	ARVCF (ENSCLMG00005013622)	BMP10 (ENSCLMG00005013623)	smad4a (ENSCLMG00005013627)	rfx3 (ENSCLMG00005013930)	glis3 (ENSCLMG00005014786)	UNC5C (ENSCLMG00005014796)	bmpr1bb (ENSCLMG00005014799)	pdlim5b (ENSCLMG00005014956)	opn4xa (ENSCLMG00005014962)	gdnfa (ENSCLMG00005014972) #26	WDR70 (ENSCLMG00005014985) #25	FAM222A (ENSCLMG00005015844)
Lumpfish	MODERN SPECIES	24	slc14a2 (ENSCLMG00005021542)	lnpep (ENSCLMG00005021548)	erap2 (ENSCLMG00005021732)	rgmb (ENSCLMG00005021736)	riok2 (ENSCLMG00005021739)	lix1 (ENSCLMG00005021742)	dnajb5 (ENSCLMG00005021748)	akr1a1a (ENSCLMG00005021752)	vcp (ENSCLMG00005021761)	fancg (ENSCLMG00005021833)	ENSCLMG00005021834	thoc5 (ENSCLMG00005000146)	tfip11 (ENSCLMG00005000233)	srrd (ENSCLMG00005000253)	slc1a3a (ENSCLMG00005000258) #21	nipbla (ENSCLMG00005000282) #22	ndc80 (ENSCLMG00005000307)	GDNF (ENSCLMG00005000313) #26	EGFLAM (ENSCLMG00005000322) #27	opn4xb (ENSCLMG00005000349)	pdlim5a (ENSCLMG00005000355)	bmpr1ba (ENSCLMG00005000405)	UNC5C (ENSCLMG00005000429)	STPG2 (ENSCLMG00005000490)	bri3bp (ENSCLMG00005000492)	wdr31 (ENSCLMG00005000494)	ENSCLMG00005000496	ENSCLMG00005000497	vps13a (ENSCLMG00005000548)	ENSCLMG00005000910	arl6ip4 (ENSCLMG00005000912)
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	13	wbp1 (ENSGACG00000016766)	lman2la (ENSGACG00000016768)	MTFP1 (ENSGACG00000016771)	MED13L (ENSGACG00000016778)	tbx3a (ENSGACG00000016783)	tbx5a (ENSGACG00000016787)	ddx54 (ENSGACG00000016793)	RAB14 (ENSGACG00000016799)	ABL1 (ENSGACG00000016802)	exosc2 (ENSGACG00000016805)	RIC1 (ENSGACG00000016817)	ERMP1 (ENSGACG00000016822)	oaz1b (ENSGACG00000016830)	ENSGACG00000016831	ENSGACG00000016833	ENSGACG00000016835 #22	nup155 (ENSGACG00000016842) #24	ENSGACG00000016849	ARVCF (ENSGACG00000016852)	BMP10 (ENSGACG00000016855)	smad4a (ENSGACG00000016858)	rfx3 (ENSGACG00000016864)	UNC5C (ENSGACG00000016867)	bmpr1bb (ENSGACG00000016869)	pdlim5b (ENSGACG00000016879)	opn4xa (ENSGACG00000016885)	gdnfa (ENSGACG00000016887) #26	WDR70 (ENSGACG00000016889) #25	ENSGACG00000016906	ENSGACG00000016907	ENSGACG00000016908 #23
Stickleback	MODERN SPECIES	12	RASEF (ENSGACG00000007528)	FRMD3 (ENSGACG00000007535)	ENSGACG00000007544	gkap1 (ENSGACG00000007551)	KIF27 (ENSGACG00000007564)	zgc:136564 (ENSGACG00000007576)	hnrnpk (ENSGACG00000007581)	rmi1 (ENSGACG00000007616)	NTRK2 (ENSGACG00000007625)	ENSGACG00000007634	agtpbp1 (ENSGACG00000007638)	naa35 (ENSGACG00000007653)	GOLM1 (ENSGACG00000007679)	lmbrd2a (ENSGACG00000007686) #17	slc1a3a (ENSGACG00000007696) #21	nipbla (ENSGACG00000007706) #22	ndc80 (ENSGACG00000007732)	ENSGACG00000007743 #26	EGFLAM (ENSGACG00000007745) #27	opn4xb (ENSGACG00000007757)	pdlim5a (ENSGACG00000007765)	bmpr1ba (ENSGACG00000007776)	UNC5C (ENSGACG00000007780)	bri3bp (ENSGACG00000007804)	wdr31 (ENSGACG00000007806)	ENSGACG00000007821	GNA14 (ENSGACG00000007900)	vps13a (ENSGACG00000007925)	FOXB2 (ENSGACG00000007973)	ENSGACG00000007980	ENSGACG00000007984
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	48	wbp1 (ENSSLUG00000012912)	lman2la (ENSSLUG00000012917)	MTFP1 (ENSSLUG00000012925)	MED13L (ENSSLUG00000013022)	tbx3a (ENSSLUG00000014976)	tbx5a (ENSSLUG00000014999)	ddx54 (ENSSLUG00000015044)	rab14 (ENSSLUG00000015897)	ABL1 (ENSSLUG00000015925)	exosc2 (ENSSLUG00000016017)	RIC1 (ENSSLUG00000016075)	ERMP1 (ENSSLUG00000016162)	oaz1b (ENSSLUG00000016174)	UHRF2 (ENSSLUG00000016186)	ENSSLUG00000016357	ENSSLUG00000016379 #22	nup155 (ENSSLUG00000016520) #24	ENSSLUG00000017131	ENSSLUG00000017136	ARVCF (ENSSLUG00000017152)	BMP10 (ENSSLUG00000017205)	smad4a (ENSSLUG00000017212)	rfx3 (ENSSLUG00000017230)	glis3 (ENSSLUG00000017236)	UNC5C (ENSSLUG00000017419)	bmpr1bb (ENSSLUG00000020466)	ENSSLUG00000020884	ENSSLUG00000020887	pdlim5b (ENSSLUG00000020893)	opn4xa (ENSSLUG00000020911)	gdnfa (ENSSLUG00000020913) #26
Pike perch	MODERN SPECIES	23	IDNK (ENSSLUG00000005521)	ENSSLUG00000005515	gkap1 (ENSSLUG00000005502)	ENSSLUG00000005479	ENSSLUG00000005473	zgc:136564 (ENSSLUG00000005467)	hnrnpk (ENSSLUG00000005395)	rmi1 (ENSSLUG00000005327)	SLC28A3 (ENSSLUG00000005308)	NTRK2 (ENSSLUG00000005234)	agtpbp1 (ENSSLUG00000017113)	naa35 (ENSSLUG00000017042)	GOLM1 (ENSSLUG00000017025)	lmbrd2a (ENSSLUG00000016951) #17	slc1a3a (ENSSLUG00000016889) #21	nipbla (ENSSLUG00000016675) #22	ndc80 (ENSSLUG00000016640)	ENSSLUG00000016629 #26	EGFLAM (ENSSLUG00000016521) #27	opn4xb (ENSSLUG00000016496)	pdlim5a (ENSSLUG00000016430)	bmpr1ba (ENSSLUG00000016057)	UNC5C (ENSSLUG00000014167)	STPG2 (ENSSLUG00000014068)	bri3bp (ENSSLUG00000014059)	wdr31 (ENSSLUG00000014050)	ENSSLUG00000014042	GNA14 (ENSSLUG00000014035)	vps13a (ENSSLUG00000012661)	ENSSLUG00000012528	FOXB2 (ENSSLUG00000012524)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	3	wbp1 (ENSCGOG00000005495)	lman2la (ENSCGOG00000005501)	MTFP1 (ENSCGOG00000005540)	MED13L (ENSCGOG00000005576)	tbx3a (ENSCGOG00000006466)	tbx5a (ENSCGOG00000006469)	ddx54 (ENSCGOG00000006489)	rab14 (ENSCGOG00000006925)	ABL1 (ENSCGOG00000007126)	exosc2 (ENSCGOG00000007190)	RIC1 (ENSCGOG00000007380)	ERMP1 (ENSCGOG00000007891)	oaz1b (ENSCGOG00000007978)	UHRF2 (ENSCGOG00000008002)	ENSCGOG00000008669	ENSCGOG00000008729 #22	nup155 (ENSCGOG00000011506) #24	ENSCGOG00000012730	ENSCGOG00000012732	ARVCF (ENSCGOG00000012737)	BMP10 (ENSCGOG00000012935)	smad4a (ENSCGOG00000012994)	rfx3 (ENSCGOG00000014006)	glis3 (ENSCGOG00000014201)	ENSCGOG00000014204	UNC5C (ENSCGOG00000014277)	bmpr1bb (ENSCGOG00000016442)	pdlim5b (ENSCGOG00000016992)	opn4xa (ENSCGOG00000016995)	gdnfa (ENSCGOG00000017012) #26	WDR70 (ENSCGOG00000017028) #25
Channel bull blenny	MODERN SPECIES	23	IDNK (ENSCGOG00000008149)	ENSCGOG00000008145	gkap1 (ENSCGOG00000008142)	ENSCGOG00000008139	ENSCGOG00000008135	zgc:136564 (ENSCGOG00000008131)	hnrnpk (ENSCGOG00000008108)	rmi1 (ENSCGOG00000008102)	SLC28A3 (ENSCGOG00000008082)	NTRK2 (ENSCGOG00000007505)	agtpbp1 (ENSCGOG00000006909)	naa35 (ENSCGOG00000006460)	GOLM1 (ENSCGOG00000006447)	lmbrd2a (ENSCGOG00000006300) #17	slc1a3a (ENSCGOG00000005366) #21	nipbla (ENSCGOG00000003956) #22	ndc80 (ENSCGOG00000003868)	ENSCGOG00000003852 #26	EGFLAM (ENSCGOG00000022308) #27	si:dkey-251i10.2 (ENSCGOG00000022303)	opn4xb (ENSCGOG00000022297)	ENSCGOG00000022291	pdlim5a (ENSCGOG00000022287)	bmpr1ba (ENSCGOG00000021984)	UNC5C (ENSCGOG00000021173)	STPG2 (ENSCGOG00000021150)	bri3bp (ENSCGOG00000021148)	wdr31 (ENSCGOG00000021145)	ENSCGOG00000021049	GNA14 (ENSCGOG00000020988)	vps13a (ENSCGOG00000020350)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	3	lman2la (ENSSAUG00010026125)	MTFP1 (ENSSAUG00010026124)	MED13L (ENSSAUG00010025431)	tbx3a (ENSSAUG00010025409)	tbx5a (ENSSAUG00010025401)	ddx54 (ENSSAUG00010024869)	rab14 (ENSSAUG00010024847)	ABL1 (ENSSAUG00010024811)	exosc2 (ENSSAUG00010024796)	RIC1 (ENSSAUG00010024782)	ERMP1 (ENSSAUG00010024745)	oaz1b (ENSSAUG00010024738)	UHRF2 (ENSSAUG00010024681)	KIAA2026 (ENSSAUG00010024672)	MLANA (ENSSAUG00010024670)	ENSSAUG00010024585 #22	nup155 (ENSSAUG00010024341) #24	ENSSAUG00010024333	ARVCF (ENSSAUG00010024329)	BMP10 (ENSSAUG00010024327)	smad4a (ENSSAUG00010024325)	rfx3 (ENSSAUG00010024276)	glis3 (ENSSAUG00010024264)	UNC5C (ENSSAUG00010022876)	bmpr1bb (ENSSAUG00010022511)	pdlim5b (ENSSAUG00010022506)	opn4xa (ENSSAUG00010022504)	gdnfa (ENSSAUG00010022502) #26	WDR70 (ENSSAUG00010022165) #25	ENSSAUG00010022160 #23	FAM222A (ENSSAUG00010022159)
Gilthead seabream	MODERN SPECIES	19	IDNK (ENSSAUG00010009119)	ENSSAUG00010009122	gkap1 (ENSSAUG00010009126)	ENSSAUG00010009130	zgc:136564 (ENSSAUG00010009131)	hnrnpk (ENSSAUG00010009140)	rmi1 (ENSSAUG00010009168)	SLC28A3 (ENSSAUG00010009173)	NTRK2 (ENSSAUG00010009211)	agtpbp1 (ENSSAUG00010009347)	naa35 (ENSSAUG00010010550)	ENSSAUG00010010553	GOLM1 (ENSSAUG00010010555)	lmbrd2a (ENSSAUG00010010559) #17	slc1a3a (ENSSAUG00010010562) #21	nipbla (ENSSAUG00010010563) #22	ndc80 (ENSSAUG00010010566)	GDNF (ENSSAUG00010010567) #26	EGFLAM (ENSSAUG00010010573) #27	opn4xb (ENSSAUG00010010598)	pdlim5a (ENSSAUG00010010612)	bmpr1ba (ENSSAUG00010010627)	UNC5C (ENSSAUG00010011075)	STPG2 (ENSSAUG00010011103)	bri3bp (ENSSAUG00010011107)	wdr31 (ENSSAUG00010011108)	ENSSAUG00010011111	GNA14 (ENSSAUG00010011113)	vps13a (ENSSAUG00010011158)	ENSSAUG00010011518	FOXB2 (ENSSAUG00010011521)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
European seabass	DUPLICATION
European seabass	MODERN SPECIES	9	lman2la (ENSDLAG00005031892)	ENSDLAG00005034988	MED13L (ENSDLAG00005003222)	ENSDLAG00005006851	tbx3a (ENSDLAG00005006894)	tbx5a (ENSDLAG00005006932)	ddx54 (ENSDLAG00005007003)	ENSDLAG00005008202	ENSDLAG00005008230	exosc2 (ENSDLAG00005008514)	ENSDLAG00005008555	ENSDLAG00005009689	ENSDLAG00005009941	ENSDLAG00005009969	ENSDLAG00005011109	ENSDLAG00005011169 #22	ENSDLAG00005011338 #24	ENSDLAG00005011767	ENSDLAG00005011755	ENSDLAG00005011789	ENSDLAG00005012213	smad4a (ENSDLAG00005032169)	rfx3 (ENSDLAG00005012256)	glis3 (ENSDLAG00005012865)	UNC5C (ENSDLAG00005012944)	bmpr1bb (ENSDLAG00005015061)	pdlim5b (ENSDLAG00005027877)	opn4xa (ENSDLAG00005015716)	gdnfa (ENSDLAG00005029352) #26	ENSDLAG00005015770 #25	ENSDLAG00005016044 #23
European seabass	MODERN SPECIES	13	FRMD3 (ENSDLAG00005018857)	IDNK (ENSDLAG00005033278)	gkap1 (ENSDLAG00005028817)	ENSDLAG00005018812	ENSDLAG00005018809	zgc:136564 (ENSDLAG00005018800)	hnrnpk (ENSDLAG00005031182)	rmi1 (ENSDLAG00005033874)	SLC28A3 (ENSDLAG00005018754)	NTRK2 (ENSDLAG00005029105)	agtpbp1 (ENSDLAG00005017854)	naa35 (ENSDLAG00005017812)	ENSDLAG00005017800	slc1a3a (ENSDLAG00005017623) #21	lmbrd2a (ENSDLAG00005017640) #17	nipbla (ENSDLAG00005017440) #22	ENSDLAG00005017361 #26	ENSDLAG00005017021 #27	ENSDLAG00005016995	opn4xb (ENSDLAG00005016964)	pdlim5a (ENSDLAG00005016895)	bmpr1ba (ENSDLAG00005016706)	UNC5C (ENSDLAG00005014696)	STPG2 (ENSDLAG00005026712)	ENSDLAG00005026396	ENSDLAG00005014561	ENSDLAG00005029740	GNA14 (ENSDLAG00005031579)	VPS13A (ENSDLAG00005009758)	ENSDLAG00005009614	FOXB2 (ENSDLAG00005026924)
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	4	lman2la (ENSLCRG00005013773)	MTFP1 (ENSLCRG00005013771)	MED13L (ENSLCRG00005012560)	tbx3a (ENSLCRG00005012545)	tbx5a (ENSLCRG00005012543)	ddx54 (ENSLCRG00005011592)	rab14 (ENSLCRG00005011551)	ABL1 (ENSLCRG00005011496)	exosc2 (ENSLCRG00005011489)	RIC1 (ENSLCRG00005011482)	ERMP1 (ENSLCRG00005011455)	oaz1b (ENSLCRG00005011446)	UHRF2 (ENSLCRG00005011361)	KIAA2026 (ENSLCRG00005011343)	MLANA (ENSLCRG00005011335)	ENSLCRG00005011233 #22	nup155 (ENSLCRG00005011128) #24	ENSLCRG00005011119	ENSLCRG00005011118	ARVCF (ENSLCRG00005011106)	BMP10 (ENSLCRG00005011104)	smad4a (ENSLCRG00005011093)	rfx3 (ENSLCRG00005009549)	glis3 (ENSLCRG00005009538)	UNC5C (ENSLCRG00005005820)	bmpr1bb (ENSLCRG00005005416)	pdlim5b (ENSLCRG00005005408)	opn4xa (ENSLCRG00005005397)	gdnfa (ENSLCRG00005005391) #26	WDR70 (ENSLCRG00005004409) #25	ENSLCRG00005004383 #23
Large yellow croaker	MODERN SPECIES	2	UBQLN1 (ENSLCRG00005012209)	gkap1 (ENSLCRG00005012208)	ENSLCRG00005012207	KIF27 (ENSLCRG00005012206)	zgc:136564 (ENSLCRG00005012204)	hnrnpk (ENSLCRG00005012203)	rmi1 (ENSLCRG00005012199)	SLC28A3 (ENSLCRG00005012195)	NTRK2 (ENSLCRG00005012194)	agtpbp1 (ENSLCRG00005011261)	naa35 (ENSLCRG00005011244)	ENSLCRG00005011242	GOLM1 (ENSLCRG00005011241)	lmbrd2a (ENSLCRG00005011200) #17	slc1a3a (ENSLCRG00005011144) #21	nipbla (ENSLCRG00005011126) #22	ndc80 (ENSLCRG00005011120)	GDNF (ENSLCRG00005011117) #26	EGFLAM (ENSLCRG00005011111) #27	opn4xb (ENSLCRG00005011105)	pdlim5a (ENSLCRG00005011100)	bmpr1ba (ENSLCRG00005010657)	UNC5C (ENSLCRG00005008563)	STPG2 (ENSLCRG00005008548)	bri3bp (ENSLCRG00005008546)	wdr31 (ENSLCRG00005008543)	ENSLCRG00005008541	GNA14 (ENSLCRG00005008540)	vps13a (ENSLCRG00005007710)	ENSLCRG00005007698	FOXB2 (ENSLCRG00005007696)
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	28	ENSLBEG00000019802	MTFP1 (ENSLBEG00000019772)	MED13L (ENSLBEG00000019632)	tbx3a (ENSLBEG00000019577)	tbx5a (ENSLBEG00000019549)	ddx54 (ENSLBEG00000019480)	rab14 (ENSLBEG00000019435)	ABL1 (ENSLBEG00000019337)	exosc2 (ENSLBEG00000019269)	RIC1 (ENSLBEG00000019176)	ERMP1 (ENSLBEG00000019097)	oaz1b (ENSLBEG00000019066)	UHRF2 (ENSLBEG00000018956)	ENSLBEG00000018934	ENSLBEG00000018855	ENSLBEG00000018699 #22	ENSLBEG00000018683 #22	nup155 (ENSLBEG00000018561) #24	ENSLBEG00000018492	ENSLBEG00000018432	ARVCF (ENSLBEG00000018360)	BMP10 (ENSLBEG00000018326)	smad4a (ENSLBEG00000018291)	rfx3 (ENSLBEG00000018260)	glis3 (ENSLBEG00000018235)	UNC5C (ENSLBEG00000018140)	bmpr1bb (ENSLBEG00000018060)	pdlim5b (ENSLBEG00000017996)	opn4xa (ENSLBEG00000017961)	gdnfa (ENSLBEG00000017940) #26	WDR70 (ENSLBEG00000017858) #25
Ballan wrasse	MODERN SPECIES	28	MTFP1 (ENSLBEG00000019772)	MED13L (ENSLBEG00000019632)	tbx3a (ENSLBEG00000019577)	tbx5a (ENSLBEG00000019549)	ddx54 (ENSLBEG00000019480)	rab14 (ENSLBEG00000019435)	ABL1 (ENSLBEG00000019337)	exosc2 (ENSLBEG00000019269)	RIC1 (ENSLBEG00000019176)	ERMP1 (ENSLBEG00000019097)	oaz1b (ENSLBEG00000019066)	UHRF2 (ENSLBEG00000018956)	ENSLBEG00000018934	ENSLBEG00000018855	ENSLBEG00000018699 #22	ENSLBEG00000018683 #22	nup155 (ENSLBEG00000018561) #24	ENSLBEG00000018492	ENSLBEG00000018432	ARVCF (ENSLBEG00000018360)	BMP10 (ENSLBEG00000018326)	smad4a (ENSLBEG00000018291)	rfx3 (ENSLBEG00000018260)	glis3 (ENSLBEG00000018235)	UNC5C (ENSLBEG00000018140)	bmpr1bb (ENSLBEG00000018060)	pdlim5b (ENSLBEG00000017996)	opn4xa (ENSLBEG00000017961)	gdnfa (ENSLBEG00000017940) #26	WDR70 (ENSLBEG00000017858) #25	ENSLBEG00000017710 #23
Ballan wrasse	MODERN SPECIES	153	zgc:113278 (ENSLBEG00000018802)	NCOA3 (ENSLBEG00000018838)	rbm38 (ENSLBEG00000018878)	mipb (ENSLBEG00000018917)	ENSLBEG00000019089	baz2a (ENSLBEG00000019144)	ptges3b (ENSLBEG00000019202)	naca (ENSLBEG00000019237)	prim1 (ENSLBEG00000019349)	rnd1a (ENSLBEG00000019408)	ddx23 (ENSLBEG00000019475)	cacnb3a (ENSLBEG00000019521)	ADCY6 (ENSLBEG00000019625)	pm20d1.2 (ENSLBEG00000019740)	slc1a3a (ENSLBEG00000019791) #21	nipbla (ENSLBEG00000019884) #22	ndc80 (ENSLBEG00000020112)	ENSLBEG00000020146 #26	EGFLAM (ENSLBEG00000020169) #27	si:dkey-251i10.2 (ENSLBEG00000020257)	opn4xb (ENSLBEG00000020276)	pdlim5a (ENSLBEG00000020316)	bmpr1ba (ENSLBEG00000020384)	UNC5C (ENSLBEG00000020448)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432.b	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Carangaria	ANCESTRAL SPECIES	9	ENSGT00390000008742	ENSGT00940000157487.s	ENSGT00940000169432.b	ENSGT00940000157487.t	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00390000008742	ENSGT00940000157487.s	ENSGT00940000169432.b	ENSGT00940000157487.t	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	269				tbx3a (ENSLCAG00010005685)	tbx5a (ENSLCAG00010005690)	ddx54 (ENSLCAG00010005700)	rab14 (ENSLCAG00010005704)	ABL1 (ENSLCAG00010005729)	exosc2 (ENSLCAG00010005872)	RIC1 (ENSLCAG00010005942)	ERMP1 (ENSLCAG00010006304)	ENSLCAG00010006334	oaz1b (ENSLCAG00010006337)	UHRF2 (ENSLCAG00010006354)	ENSLCAG00010006402	ENSLCAG00010006412 #22	nup155 (ENSLCAG00010006449) #24	ENSLCAG00010006499	ARVCF (ENSLCAG00010006506)	BMP10 (ENSLCAG00010006514)	smad4a (ENSLCAG00010006525)	rfx3 (ENSLCAG00010006561)	glis3 (ENSLCAG00010006586)	UNC5C (ENSLCAG00010006614)
Barramundi perch	MODERN SPECIES	95	gkap1 (ENSLCAG00010000243)	ENSLCAG00010000220	ENSLCAG00010000207	ENSLCAG00010028335	zgc:136564 (ENSLCAG00010028334)	hnrnpk (ENSLCAG00010028333)	rmi1 (ENSLCAG00010028332)	SLC28A3 (ENSLCAG00010028331)	NTRK2 (ENSLCAG00010028330)	agtpbp1 (ENSLCAG00010028329)	naa35 (ENSLCAG00010028328)	ENSLCAG00010028327	GOLM1 (ENSLCAG00010028326)	lmbrd2a (ENSLCAG00010028325) #17	slc1a3a (ENSLCAG00010028324) #21	nipbla (ENSLCAG00010028323) #22	ndc80 (ENSLCAG00010028322)	GDNF (ENSLCAG00010028321) #26	EGFLAM (ENSLCAG00010028320) #27	si:dkey-251i10.2 (ENSLCAG00010028319)	opn4xb (ENSLCAG00010028318)	pdlim5a (ENSLCAG00010028317)	bmpr1ba (ENSLCAG00010028316)	UNC5C (ENSLCAG00010028315)	STPG2 (ENSLCAG00010028314)	bri3bp (ENSLCAG00010028313)	wdr31 (ENSLCAG00010028312)	ENSLCAG00010028311	GNA14 (ENSLCAG00010028310)	vps13a (ENSLCAG00010028309)	ENSLCAG00010028308
Seriola	ANCESTRAL SPECIES	35	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000157487.s	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.d.b.a.a	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00940000178569	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2993	wbp1 (ENSSLDG00000009987)	lman2la (ENSSLDG00000010011)	MTFP1 (ENSSLDG00000010055)	MED13L (ENSSLDG00000010110)	tbx3a (ENSSLDG00000010254)	tbx5a (ENSSLDG00000010300)	ddx54 (ENSSLDG00000010380)	rab14 (ENSSLDG00000010503)	ABL1 (ENSSLDG00000010560)	exosc2 (ENSSLDG00000010616)	RIC1 (ENSSLDG00000010673)	ERMP1 (ENSSLDG00000010736)	oaz1b (ENSSLDG00000010778)	UHRF2 (ENSSLDG00000010802)	ENSSLDG00000010851	ENSSLDG00000010900 #22	ENSSLDG00000010985 #22	nup155 (ENSSLDG00000011031) #24	ENSSLDG00000011179	ENSSLDG00000011205	ARVCF (ENSSLDG00000011280)	BMP10 (ENSSLDG00000011329)	smad4a (ENSSLDG00000011357)	rfx3 (ENSSLDG00000011445)	glis3 (ENSSLDG00000011489)	UNC5C (ENSSLDG00000011559)	bmpr1bb (ENSSLDG00000011716)	pdlim5b (ENSSLDG00000011763)	opn4xa (ENSSLDG00000011793)	gdnfa (ENSSLDG00000011810) #26	WDR70 (ENSSLDG00000011844) #25
Yellowtail amberjack	MODERN SPECIES	2993	lman2la (ENSSLDG00000010011)	MTFP1 (ENSSLDG00000010055)	MED13L (ENSSLDG00000010110)	tbx3a (ENSSLDG00000010254)	tbx5a (ENSSLDG00000010300)	ddx54 (ENSSLDG00000010380)	rab14 (ENSSLDG00000010503)	ABL1 (ENSSLDG00000010560)	exosc2 (ENSSLDG00000010616)	RIC1 (ENSSLDG00000010673)	ERMP1 (ENSSLDG00000010736)	oaz1b (ENSSLDG00000010778)	UHRF2 (ENSSLDG00000010802)	ENSSLDG00000010851	ENSSLDG00000010900 #22	ENSSLDG00000010985 #22	nup155 (ENSSLDG00000011031) #24	ENSSLDG00000011179	ENSSLDG00000011205	ARVCF (ENSSLDG00000011280)	BMP10 (ENSSLDG00000011329)	smad4a (ENSSLDG00000011357)	rfx3 (ENSSLDG00000011445)	glis3 (ENSSLDG00000011489)	UNC5C (ENSSLDG00000011559)	bmpr1bb (ENSSLDG00000011716)	pdlim5b (ENSSLDG00000011763)	opn4xa (ENSSLDG00000011793)	gdnfa (ENSSLDG00000011810) #26	WDR70 (ENSSLDG00000011844) #25	ENSSLDG00000011896 #23
Yellowtail amberjack	MODERN SPECIES	2921	ENSSLDG00000001948	ENSSLDG00000001975	ENSSLDG00000001991	ENSSLDG00000002007	zgc:136564 (ENSSLDG00000002020)	hnrnpk (ENSSLDG00000002069)	rmi1 (ENSSLDG00000002128)	SLC28A3 (ENSSLDG00000002143)	NTRK2 (ENSSLDG00000002210)	agtpbp1 (ENSSLDG00000002259)	naa35 (ENSSLDG00000002361)	ENSSLDG00000002453	GOLM1 (ENSSLDG00000002464)	lmbrd2a (ENSSLDG00000002483) #17	slc1a3a (ENSSLDG00000002587) #21	nipbla (ENSSLDG00000002664) #22	ndc80 (ENSSLDG00000003051)	GDNF (ENSSLDG00000003132) #26	EGFLAM (ENSSLDG00000003161) #27	si:dkey-251i10.2 (ENSSLDG00000003236)	opn4xb (ENSSLDG00000003253)	pdlim5a (ENSSLDG00000003302)	ENSSLDG00000003342
Greater amberjack	DUPLICATION
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	216				ENSSDUG00000004352	tbx3a (ENSSDUG00000004396)	tbx5a (ENSSDUG00000004425)	ddx54 (ENSSDUG00000004474)	rab14 (ENSSDUG00000004551)	ABL1 (ENSSDUG00000004590)	exosc2 (ENSSDUG00000004634)	RIC1 (ENSSDUG00000004672)	ERMP1 (ENSSDUG00000004729)	oaz1b (ENSSDUG00000004803)	UHRF2 (ENSSDUG00000004825)	ENSSDUG00000004895	ENSSDUG00000004924 #22	ENSSDUG00000005001 #22	nup155 (ENSSDUG00000005030) #24	ENSSDUG00000005179	ENSSDUG00000005185	ARVCF (ENSSDUG00000005215)	BMP10 (ENSSDUG00000005285)	smad4a (ENSSDUG00000005304)	rfx3 (ENSSDUG00000005356)	glis3 (ENSSDUG00000005433)	UNC5C (ENSSDUG00000005477)	bmpr1bb (ENSSDUG00000005566)
Greater amberjack	MODERN SPECIES	216			ENSSDUG00000004352	tbx3a (ENSSDUG00000004396)	tbx5a (ENSSDUG00000004425)	ddx54 (ENSSDUG00000004474)	rab14 (ENSSDUG00000004551)	ABL1 (ENSSDUG00000004590)	exosc2 (ENSSDUG00000004634)	RIC1 (ENSSDUG00000004672)	ERMP1 (ENSSDUG00000004729)	oaz1b (ENSSDUG00000004803)	UHRF2 (ENSSDUG00000004825)	ENSSDUG00000004895	ENSSDUG00000004924 #22	ENSSDUG00000005001 #22	nup155 (ENSSDUG00000005030) #24	ENSSDUG00000005179	ENSSDUG00000005185	ARVCF (ENSSDUG00000005215)	BMP10 (ENSSDUG00000005285)	smad4a (ENSSDUG00000005304)	rfx3 (ENSSDUG00000005356)	glis3 (ENSSDUG00000005433)	UNC5C (ENSSDUG00000005477)	bmpr1bb (ENSSDUG00000005566)
Greater amberjack	MODERN SPECIES	98	gkap1 (ENSSDUG00000022199)	KIF27 (ENSSDUG00000022190)	ENSSDUG00000022185	zgc:136564 (ENSSDUG00000022179)	ENSSDUG00000022176	hnrnpk (ENSSDUG00000022165)	rmi1 (ENSSDUG00000022159)	SLC28A3 (ENSSDUG00000022144)	NTRK2 (ENSSDUG00000022128)	agtpbp1 (ENSSDUG00000022074)	naa35 (ENSSDUG00000022038)	ENSSDUG00000022030	GOLM1 (ENSSDUG00000022021)	lmbrd2a (ENSSDUG00000022007) #17	slc1a3a (ENSSDUG00000021995) #21	nipbla (ENSSDUG00000021930) #22	ndc80 (ENSSDUG00000021910)	GDNF (ENSSDUG00000021907) #26	EGFLAM (ENSSDUG00000021874) #27	si:dkey-251i10.2 (ENSSDUG00000021863)	opn4xb (ENSSDUG00000021856)	pdlim5a (ENSSDUG00000021835)	bmpr1ba (ENSSDUG00000021819)	UNC5C (ENSSDUG00000021801)	STPG2 (ENSSDUG00000021790)	bri3bp (ENSSDUG00000021787)	wdr31 (ENSSDUG00000021779)	ENSSDUG00000021773	GNA14 (ENSSDUG00000021761)	vps13a (ENSSDUG00000021275)	ENSSDUG00000021202
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00390000003364	ENSGT00940000156437	ENSGT00390000008742	ENSGT00940000169432.b	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00940000165714	ENSGT00950000183083.a.d.b
Turbot	DUPLICATION
Turbot	MODERN SPECIES	7	wbp1 (ENSSMAG00000003482)	lman2la (ENSSMAG00000003448)	ENSSMAG00000026897	MED13L (ENSSMAG00000003366)	tbx3a (ENSSMAG00000003329)	tbx5a (ENSSMAG00000003299)	ddx54 (ENSSMAG00000003210)	ENSSMAG00000003166	ENSSMAG00000003144	exosc2 (ENSSMAG00000003112)	ENSSMAG00000003043	ENSSMAG00000003001	ENSSMAG00000002990	ENSSMAG00000002939	ENSSMAG00000002926	ENSSMAG00000002824 #22	ENSSMAG00000002770 #24	ENSSMAG00000002759	ENSSMAG00000002742	ENSSMAG00000002728	ENSSMAG00000002714	smad4a (ENSSMAG00000002673)	rfx3 (ENSSMAG00000002591)	glis3 (ENSSMAG00000002564)	UNC5C (ENSSMAG00000002408)	bmpr1bb (ENSSMAG00000002364)	pdlim5b (ENSSMAG00000002349)	opn4xa (ENSSMAG00000002337)	gdnfa (ENSSMAG00000002331) #26	ENSSMAG00000002311 #25	ENSSMAG00000002249
Turbot	MODERN SPECIES	21	FRMD3 (ENSSMAG00000000874)	IDNK (ENSSMAG00000000863)	ENSSMAG00000000826	gkap1 (ENSSMAG00000000816)	zgc:136564 (ENSSMAG00000019492)	hnrnpk (ENSSMAG00000019461)	rmi1 (ENSSMAG00000019443)	SLC28A3 (ENSSMAG00000019418)	NTRK2 (ENSSMAG00000019401)	agtpbp1 (ENSSMAG00000019334)	naa35 (ENSSMAG00000019239)	ENSSMAG00000019221	GOLM1 (ENSSMAG00000019200)	lmbrd2a (ENSSMAG00000019180) #17	slc1a3a (ENSSMAG00000019163) #21	nipbla (ENSSMAG00000019097) #22	ENSSMAG00000019051	ENSSMAG00000019044 #26	ENSSMAG00000018944 #27	ENSSMAG00000018926	opn4xb (ENSSMAG00000018910)	ENSSMAG00000018888	pdlim5a (ENSSMAG00000028243)	bmpr1ba (ENSSMAG00000018855)	UNC5C (ENSSMAG00000018821)	STPG2 (ENSSMAG00000018799)	ENSSMAG00000018785	ENSSMAG00000018777	ENSSMAG00000018771	GNA14 (ENSSMAG00000018762)	VPS13A (ENSSMAG00000018673)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	5	tbx3a (ENSCSEG00000016441)	tbx5a (ENSCSEG00000016451)	ddx54 (ENSCSEG00000016462)	rab14 (ENSCSEG00000016498)	ABL1 (ENSCSEG00000016527)	exosc2 (ENSCSEG00000016539)	exosc2 (ENSCSEG00000016547)	RIC1 (ENSCSEG00000016560)	ERMP1 (ENSCSEG00000016609)	oaz1b (ENSCSEG00000016651)	oaz1b (ENSCSEG00000016656)	ENSCSEG00000016668	ENSCSEG00000016706	MLANA (ENSCSEG00000016732)	ENSCSEG00000016736	ENSCSEG00000016739 #22	ENSCSEG00000016748	nup155 (ENSCSEG00000016754) #24	ENSCSEG00000016790	ENSCSEG00000016795	ARVCF (ENSCSEG00000016810)	BMP10 (ENSCSEG00000016823)	smad4a (ENSCSEG00000016829)	rfx3 (ENSCSEG00000016846)	glis3 (ENSCSEG00000016889)	UNC5C (ENSCSEG00000016909)	bmpr1bb (ENSCSEG00000016981)	ASTN2 (ENSCSEG00000017190)	trim32 (ENSCSEG00000017205)	ENSCSEG00000017207	brinp1 (ENSCSEG00000017221)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	UBQLN1 (ENSCSEG00000012422)	gkap1 (ENSCSEG00000012428)	ENSCSEG00000012431	pex11g (ENSCSEG00000012441)	ENSCSEG00000012452	zgc:136564 (ENSCSEG00000012454)	hnrnpk (ENSCSEG00000012457)	rmi1 (ENSCSEG00000012465)	SLC28A3 (ENSCSEG00000012478)	NTRK2 (ENSCSEG00000012494)	agtpbp1 (ENSCSEG00000012500)	naa35 (ENSCSEG00000012551)	GOLM1 (ENSCSEG00000012594)	slc1a3a (ENSCSEG00000012620) #21	ENSCSEG00000012636	nipbla (ENSCSEG00000012642) #22	ENSCSEG00000012693 #26	EGFLAM (ENSCSEG00000012729) #27	pdlim5a (ENSCSEG00000012832)	BMPR1B (ENSCSEG00000012881)	UNC5C (ENSCSEG00000012896)	SLC8B1 (ENSCSEG00000012948)	TPCN1 (ENSCSEG00000012960)	ENSCSEG00000012986	tbx5b (ENSCSEG00000012997)	plekha2 (ENSCSEG00000013004)	ENSCSEG00000013019	ENSCSEG00000013045	DDHD2 (ENSCSEG00000013057)	ENSCSEG00000013129	vcp (ENSCSEG00000013416)
Tongue sole	MODERN SPECIES	397	ENSCSEG00000011375	hapln1a (ENSCSEG00000011392)	ENSCSEG00000011431	cert1a (ENSCSEG00000011472)	ENSCSEG00000011533	ENSCSEG00000011555 #17	ENSCSEG00000011560	ENSCSEG00000011566	GOLM1 (ENSCSEG00000011570)	naa35 (ENSCSEG00000011579)	ENSCSEG00000011606	NTRK2 (ENSCSEG00000011619)	HNRNPK (ENSCSEG00000011661)	ENSCSEG00000011690	ENSCSEG00000011692	nipbla (ENSCSEG00000011710) #22	ENSCSEG00000011750	ENSCSEG00000011759	ENSCSEG00000011763	vcp (ENSCSEG00000011768)	ENSCSEG00000011800	ENSCSEG00000011821	ENSCSEG00000011840	rgmb (ENSCSEG00000011842)	ENSCSEG00000011845	erap2 (ENSCSEG00000011850)	ENSCSEG00000011875	morc2 (ENSCSEG00000011888)	ENSCSEG00000011929	ENSCSEG00000011946	ENSCSEG00000011955
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	101																ENSCSEG00000019219 #22
Tongue sole	MODERN SPECIES	398	GOLM1 (ENSCSEG00000012594)	naa35 (ENSCSEG00000012551)	agtpbp1 (ENSCSEG00000012500)	NTRK2 (ENSCSEG00000012494)	SLC28A3 (ENSCSEG00000012478)	rmi1 (ENSCSEG00000012465)	hnrnpk (ENSCSEG00000012457)	zgc:136564 (ENSCSEG00000012454)	ENSCSEG00000012452	pex11g (ENSCSEG00000012441)	ENSCSEG00000012431	gkap1 (ENSCSEG00000012428)	UBQLN1 (ENSCSEG00000012422)	IDNK (ENSCSEG00000012415)	FRMD3 (ENSCSEG00000012406)	ENSCSEG00000012394 #22	neurl3 (ENSCSEG00000012380)	sorbs3 (ENSCSEG00000012353)	pdlim2 (ENSCSEG00000012328)	adgra2 (ENSCSEG00000012254)	ENSCSEG00000012220	prlhr2a (ENSCSEG00000012209)	ENSCSEG00000012202	adrb3a (ENSCSEG00000012194)	ENSCSEG00000012181	fam219ab (ENSCSEG00000012169)	klf9 (ENSCSEG00000012162)	ENSCSEG00000012143	ENSCSEG00000012133	ENSCSEG00000012123	tmem167a (ENSCSEG00000012117)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00390000008742	ENSGT00940000169432.b	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	3	wbp1 (ENSMAMG00000012931)	lman2la (ENSMAMG00000012904)	MTFP1 (ENSMAMG00000025995)	MED13L (ENSMAMG00000012829)	tbx3a (ENSMAMG00000012815)	tbx5a (ENSMAMG00000012799)	ddx54 (ENSMAMG00000012784)	ENSMAMG00000012750	ENSMAMG00000012709	ENSMAMG00000012627	ENSMAMG00000012491	ENSMAMG00000012466	ENSMAMG00000012458	ENSMAMG00000012395	ENSMAMG00000012373	ENSMAMG00000012172 #22	ENSMAMG00000012098 #24	ENSMAMG00000028079	ENSMAMG00000012047	ENSMAMG00000012033	smad4a (ENSMAMG00000011989)	rfx3 (ENSMAMG00000011935)	glis3 (ENSMAMG00000011917)	UNC5C (ENSMAMG00000011881)	bmpr1bb (ENSMAMG00000011816)	pdlim5b (ENSMAMG00000011762)	opn4xa (ENSMAMG00000011749)	gdnfa (ENSMAMG00000011729) #26	ENSMAMG00000011715 #25	ENSMAMG00000027403 #23	ENSMAMG00000011709
Zig-zag eel	MODERN SPECIES	23	IDNK (ENSMAMG00000024372)	ENSMAMG00000001630	gkap1 (ENSMAMG00000001670)	ENSMAMG00000028653	ENSMAMG00000001772	zgc:136564 (ENSMAMG00000025686)	hnrnpk (ENSMAMG00000001787)	rmi1 (ENSMAMG00000001809)	SLC28A3 (ENSMAMG00000001879)	NTRK2 (ENSMAMG00000001925)	agtpbp1 (ENSMAMG00000001973)	naa35 (ENSMAMG00000002139)	GOLM1 (ENSMAMG00000002214)	lmbrd2a (ENSMAMG00000002223) #17	ENSMAMG00000002256 #21	nipbla (ENSMAMG00000002314) #22	ENSMAMG00000002549	ENSMAMG00000002565	ENSMAMG00000002611 #26	ENSMAMG00000002627	ENSMAMG00000002645	slc4a4a (ENSMAMG00000002757)	ENSMAMG00000002874	adamts3 (ENSMAMG00000002934)	ENSMAMG00000025030	SMARCA2 (ENSMAMG00000003056)	ENSMAMG00000027282	dmrt2a (ENSMAMG00000003133)	dmrt3a (ENSMAMG00000003154)	dmrt1 (ENSMAMG00000003170)	ENSMAMG00000003187
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00940000156437	ENSGT00390000008742	ENSGT01090000260294	ENSGT00940000157487	ENSGT00390000002374	ENSGT00940000153434.c.a	ENSGT00940000161055	ENSGT00390000016025.a	ENSGT00940000155181.c.a	ENSGT00940000157707	ENSGT00390000002445	ENSGT00390000009571.a.a	ENSGT00530000063675.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00390000018386	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT00940000165599.C	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a.d	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00390000002024	ENSGT00910000144273	ENSGT00940000162569.a	ENSGT00940000158510	ENSGT00950000183083.a.d.b	ENSGT00940000161259.A
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	3	ENSATEG00000018387	lman2la (ENSATEG00000018394)	ENSATEG00000018433	MED13L (ENSATEG00000018446)	tbx3a (ENSATEG00000018471)	tbx5a (ENSATEG00000018495)	ddx54 (ENSATEG00000018529)	ENSATEG00000018600	ENSATEG00000018625	exosc2 (ENSATEG00000018680)	ENSATEG00000018719	ENSATEG00000018816	ENSATEG00000018879	ENSATEG00000018932	ENSATEG00000018999	ENSATEG00000019067 #22	ENSATEG00000019247 #24	ENSATEG00000019385	ENSATEG00000019396	ENSATEG00000019411	smad4a (ENSATEG00000019422)	rfx3 (ENSATEG00000019466)	glis3 (ENSATEG00000019518)	UNC5C (ENSATEG00000019548)	bmpr1bb (ENSATEG00000019663)	pdlim5b (ENSATEG00000019707)	opn4xa (ENSATEG00000019730)	gdnfa (ENSATEG00000025610) #26	ENSATEG00000019788 #25	ENSATEG00000019843	ENSATEG00000019850
Climbing perch	MODERN SPECIES	22	IDNK (ENSATEG00000029086)	UBQLN1 (ENSATEG00000014854)	gkap1 (ENSATEG00000014842)	ENSATEG00000014795	zgc:136564 (ENSATEG00000014747)	hnrnpk (ENSATEG00000014700)	rmi1 (ENSATEG00000014694)	SLC28A3 (ENSATEG00000014661)	NTRK2 (ENSATEG00000014637)	agtpbp1 (ENSATEG00000014559)	naa35 (ENSATEG00000014524)	ENSATEG00000029703	ENSATEG00000028385	lmbrd2a (ENSATEG00000014475) #17	slc1a3a (ENSATEG00000014453) #21	nipbla (ENSATEG00000014308) #22	ENSATEG00000014281	ENSATEG00000014271 #26	ENSATEG00000014218 #27	ENSATEG00000014190	opn4xb (ENSATEG00000014167)	pdlim5a (ENSATEG00000014080)	bmpr1ba (ENSATEG00000014026)	UNC5C (ENSATEG00000013966)	STPG2 (ENSATEG00000013911)	ENSATEG00000029940	ENSATEG00000013876	ENSATEG00000026851	GNA14 (ENSATEG00000013827)	VPS13A (ENSATEG00000012753)	ENSATEG00000026923
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	3	MTFP1 (ENSBSLG00000014863)	ENSBSLG00000014852	MED13L (ENSBSLG00000014200)	tbx3a (ENSBSLG00000014066)	ENSBSLG00000013803	tbx5a (ENSBSLG00000013792)	ddx54 (ENSBSLG00000013310)	rab14 (ENSBSLG00000012526)	ABL1 (ENSBSLG00000012314)	exosc2 (ENSBSLG00000012167)	RIC1 (ENSBSLG00000011928)	ERMP1 (ENSBSLG00000011523)	oaz1b (ENSBSLG00000011504)	UHRF2 (ENSBSLG00000010819)	ENSBSLG00000010326	ENSBSLG00000010301 #22	nup155 (ENSBSLG00000010054) #24	ENSBSLG00000010016	ENSBSLG00000010003	ARVCF (ENSBSLG00000009733)	BMP10 (ENSBSLG00000009573)	smad4a (ENSBSLG00000009477)	rfx3 (ENSBSLG00000009302)	glis3 (ENSBSLG00000009272)	UNC5C (ENSBSLG00000007167)	bmpr1bb (ENSBSLG00000006648)	pdlim5b (ENSBSLG00000006360)	opn4xa (ENSBSLG00000005912)	gdnfa (ENSBSLG00000005905) #26	WDR70 (ENSBSLG00000005018) #25	ENSBSLG00000004775 #23
Siamese fighting fish	MODERN SPECIES	20	FRMD3 (ENSBSLG00000004220)	IDNK (ENSBSLG00000004154)	UBQLN1 (ENSBSLG00000004127)	gkap1 (ENSBSLG00000004088)	ENSBSLG00000004078	KIF27 (ENSBSLG00000004037)	zgc:136564 (ENSBSLG00000004010)	hnrnpk (ENSBSLG00000003905)	rmi1 (ENSBSLG00000003826)	NTRK2 (ENSBSLG00000003726)	agtpbp1 (ENSBSLG00000002867)	naa35 (ENSBSLG00000002626)	ENSBSLG00000002595	lmbrd2a (ENSBSLG00000002303) #17	slc1a3a (ENSBSLG00000002179) #21	nipbla (ENSBSLG00000001915) #22	ndc80 (ENSBSLG00000001902)	GDNF (ENSBSLG00000001899) #26	EGFLAM (ENSBSLG00000001825) #27	si:dkey-251i10.2 (ENSBSLG00000001808)	opn4xb (ENSBSLG00000001794)	pdlim5a (ENSBSLG00000001746)	bmpr1ba (ENSBSLG00000020449)	UNC5C (ENSBSLG00000019525)	STPG2 (ENSBSLG00000019246)	bri3bp (ENSBSLG00000019241)	wdr31 (ENSBSLG00000019230)	ENSBSLG00000019208	GNA14 (ENSBSLG00000019190)	vps13a (ENSBSLG00000017832)	ENSBSLG00000017753
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	143				tbx3a (ENSHCOG00000019347)	tbx5a (ENSHCOG00000019315)	ddx54 (ENSHCOG00000019287)	rab14 (ENSHCOG00000019224)	ABL1 (ENSHCOG00000019180)	exosc2 (ENSHCOG00000019130)	RIC1 (ENSHCOG00000019095)	ERMP1 (ENSHCOG00000019022)	oaz1b (ENSHCOG00000019012)	UHRF2 (ENSHCOG00000018996)	ENSHCOG00000018984	MLANA (ENSHCOG00000018979)	ENSHCOG00000018966 #22	ENSHCOG00000018934 #22	ENSHCOG00000018930	nup155 (ENSHCOG00000018914) #24	ENSHCOG00000018853	ENSHCOG00000018848	smad4a (ENSHCOG00000018817)	rfx3 (ENSHCOG00000018764)	glis3 (ENSHCOG00000018717)	UNC5C (ENSHCOG00000000496)
Tiger tail seahorse	MODERN SPECIES	143			tbx3a (ENSHCOG00000019347)	tbx5a (ENSHCOG00000019315)	ddx54 (ENSHCOG00000019287)	rab14 (ENSHCOG00000019224)	ABL1 (ENSHCOG00000019180)	exosc2 (ENSHCOG00000019130)	RIC1 (ENSHCOG00000019095)	ERMP1 (ENSHCOG00000019022)	oaz1b (ENSHCOG00000019012)	UHRF2 (ENSHCOG00000018996)	ENSHCOG00000018984	MLANA (ENSHCOG00000018979)	ENSHCOG00000018966 #22	ENSHCOG00000018934 #22	ENSHCOG00000018930	nup155 (ENSHCOG00000018914) #24	ENSHCOG00000018853	ENSHCOG00000018848	smad4a (ENSHCOG00000018817)	rfx3 (ENSHCOG00000018764)	glis3 (ENSHCOG00000018717)	UNC5C (ENSHCOG00000000496)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	134	IDNK (ENSHCOG00000011023)	gkap1 (ENSHCOG00000011045)	ENSHCOG00000011059	ENSHCOG00000011072	ENSHCOG00000011079	zgc:136564 (ENSHCOG00000011087)	hnrnpk (ENSHCOG00000011097)	rmi1 (ENSHCOG00000011132)	SLC28A3 (ENSHCOG00000011170)	NTRK2 (ENSHCOG00000011200)	agtpbp1 (ENSHCOG00000011343)	naa35 (ENSHCOG00000011361)	GOLM1 (ENSHCOG00000011372)	lmbrd2a (ENSHCOG00000011404) #17	slc1a3a (ENSHCOG00000011427) #21	nipbla (ENSHCOG00000014093) #22	ENSHCOG00000014183 #22	ndc80 (ENSHCOG00000014210)	GDNF (ENSHCOG00000014223) #26	EGFLAM (ENSHCOG00000014266) #27	opn4xb (ENSHCOG00000014458)	ENSHCOG00000014476	psmd9 (ENSHCOG00000014493)	gtf2h3 (ENSHCOG00000014501)	RFESD (ENSHCOG00000014514)	ENSHCOG00000014520	pcsk5b (ENSHCOG00000014530)	rfk (ENSHCOG00000014538)	ENSHCOG00000014544	ENSHCOG00000014554	ENSHCOG00000014599
Tiger tail seahorse	MODERN SPECIES	134	gkap1 (ENSHCOG00000011045)	ENSHCOG00000011059	ENSHCOG00000011072	ENSHCOG00000011079	zgc:136564 (ENSHCOG00000011087)	hnrnpk (ENSHCOG00000011097)	rmi1 (ENSHCOG00000011132)	SLC28A3 (ENSHCOG00000011170)	NTRK2 (ENSHCOG00000011200)	agtpbp1 (ENSHCOG00000011343)	naa35 (ENSHCOG00000011361)	GOLM1 (ENSHCOG00000011372)	lmbrd2a (ENSHCOG00000011404) #17	slc1a3a (ENSHCOG00000011427) #21	nipbla (ENSHCOG00000014093) #22	ENSHCOG00000014183 #22	ndc80 (ENSHCOG00000014210)	GDNF (ENSHCOG00000014223) #26	EGFLAM (ENSHCOG00000014266) #27	opn4xb (ENSHCOG00000014458)	ENSHCOG00000014476	psmd9 (ENSHCOG00000014493)	gtf2h3 (ENSHCOG00000014501)	RFESD (ENSHCOG00000014514)	ENSHCOG00000014520	pcsk5b (ENSHCOG00000014530)	rfk (ENSHCOG00000014538)	ENSHCOG00000014544	ENSHCOG00000014554	ENSHCOG00000014599	ENSHCOG00000014619
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	3	SAPCD2 (ENSMMDG00005012420)	tmem141 (ENSMMDG00005012418)	zmynd19 (ENSMMDG00005012417)	bspry (ENSMMDG00005012413)	coq4 (ENSMMDG00005012410)	ENSMMDG00005012409	ENSMMDG00005012401	ENSMMDG00005012400	fbxw5 (ENSMMDG00005012394)	RIC1 (ENSMMDG00005012368)	ENSMMDG00005012363	ERMP1 (ENSMMDG00005012362)	oaz1b (ENSMMDG00005012360)	ENSMMDG00005012255	ENSMMDG00005012239	ENSMMDG00005012234 #22	ENSMMDG00005012228 #22	nup155 (ENSMMDG00005012075) #24	ENSMMDG00005012063	ARVCF (ENSMMDG00005012057)	auh (ENSMMDG00005012019)	nfil3 (ENSMMDG00005012014)	ROR2 (ENSMMDG00005012013)	sptlc1 (ENSMMDG00005012004)	ENSMMDG00005012001	chsy3 (ENSMMDG00005011974)	isoc1 (ENSMMDG00005011970)	aldh7a1 (ENSMMDG00005011351)	ENSMMDG00005011319	C5orf63 (ENSMMDG00005011315)	megf10 (ENSMMDG00005011308)
Pinecone sodierfish	MODERN SPECIES	3	tmem141 (ENSMMDG00005012418)	zmynd19 (ENSMMDG00005012417)	bspry (ENSMMDG00005012413)	coq4 (ENSMMDG00005012410)	ENSMMDG00005012409	ENSMMDG00005012401	ENSMMDG00005012400	fbxw5 (ENSMMDG00005012394)	RIC1 (ENSMMDG00005012368)	ENSMMDG00005012363	ERMP1 (ENSMMDG00005012362)	oaz1b (ENSMMDG00005012360)	ENSMMDG00005012255	ENSMMDG00005012239	ENSMMDG00005012234 #22	ENSMMDG00005012228 #22	nup155 (ENSMMDG00005012075) #24	ENSMMDG00005012063	ARVCF (ENSMMDG00005012057)	auh (ENSMMDG00005012019)	nfil3 (ENSMMDG00005012014)	ROR2 (ENSMMDG00005012013)	sptlc1 (ENSMMDG00005012004)	ENSMMDG00005012001	chsy3 (ENSMMDG00005011974)	isoc1 (ENSMMDG00005011970)	aldh7a1 (ENSMMDG00005011351)	ENSMMDG00005011319	C5orf63 (ENSMMDG00005011315)	megf10 (ENSMMDG00005011308)	prrc1 (ENSMMDG00005011305)
Pinecone sodierfish	MODERN SPECIES	23	IDNK (ENSMMDG00005024683)	UBQLN1 (ENSMMDG00005024682)	gkap1 (ENSMMDG00005024681)	ENSMMDG00005024679	zgc:136564 (ENSMMDG00005024678)	hnrnpk (ENSMMDG00005024677)	rmi1 (ENSMMDG00005024676)	SLC28A3 (ENSMMDG00005024675)	NTRK2 (ENSMMDG00005024674)	agtpbp1 (ENSMMDG00005024668)	naa35 (ENSMMDG00005024667)	ENSMMDG00005024666	GOLM1 (ENSMMDG00005024665)	lmbrd2a (ENSMMDG00005024664) #17	slc1a3a (ENSMMDG00005024663) #21	nipbla (ENSMMDG00005024662) #22	ndc80 (ENSMMDG00005024661)	GDNF (ENSMMDG00005024660) #26	EGFLAM (ENSMMDG00005024659) #27	opn4xb (ENSMMDG00005024658)	pdlim5a (ENSMMDG00005024657)	bmpr1ba (ENSMMDG00005024654)	UNC5C (ENSMMDG00005024653)	STPG2 (ENSMMDG00005024652)	bri3bp (ENSMMDG00005024651)	wdr31 (ENSMMDG00005024650)	ENSMMDG00005024649	GNA14 (ENSMMDG00005024648)	vps13a (ENSMMDG00005024582)	POGK (ENSMMDG00005024182)	FOXB2 (ENSMMDG00005024168)
Otomorpha	ANCESTRAL SPECIES	71												ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000155919.b.a	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00940000160973	ENSGT00940000157435.a.a	ENSGT00730000111224
Otophysi	ANCESTRAL SPECIES	281									ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000155919.b.a.e	ENSGT00950000182815.a.a.a.a.a.d	ENSGT00390000001063	ENSGT00940000160973	ENSGT00940000157435.a.a	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000156901.B	ENSGT00920000149159
Characiphysae	ANCESTRAL SPECIES	42	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000155713	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00510000046732.A.c	ENSGT00390000013989.b	ENSGT00940000154769	ENSGT00390000012955	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00530000064411.b	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00940000158504 #27	ENSGT00940000155292.db.a	ENSGT00950000182993.A.b.f #26	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b
Channel catfish	MODERN SPECIES	7	SEZ6 (ENSIPUG00000021467)	phf12 (ENSIPUG00000021639)	dhrs13a.2 (ENSIPUG00000021666)	FCHSD2 (ENSIPUG00000021675)	Fam168a (ENSIPUG00000021706)	plekhb1 (ENSIPUG00000021731)	rab6a (ENSIPUG00000021740)	Mrpl48 (ENSIPUG00000021795)	dnajb13 (ENSIPUG00000021818)	ucp2 (ENSIPUG00000021870)	Ucp2 (ENSIPUG00000003920)	ENSIPUG00000003955	icln (ENSIPUG00000004013)	ranbp3l (ENSIPUG00000004048) #20	slc1a3 (ENSIPUG00000004062) #21	nipblb (ENSIPUG00000004101) #22	NUP155 (ENSIPUG00000004317) #24	ENSIPUG00000004588 #23	WDR70 (ENSIPUG00000004634) #25	gdnf (ENSIPUG00000004668) #26	opn4xa (ENSIPUG00000004678)	pdlim5b (ENSIPUG00000004731)	BMPR1B (ENSIPUG00000004770)	UNC5C (ENSIPUG00000004839)	glis3 (ENSIPUG00000004952)	rfx3 (ENSIPUG00000004967)	SMAD4 (ENSIPUG00000005015)	BMP10 (ENSIPUG00000005105)	npffr1l3 (ENSIPUG00000005114)	ENSIPUG00000005136	ENSIPUG00000005174
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00940000155768.A	ENSGT00940000156995.b	ENSGT00940000155713	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00510000046732.A.c	ENSGT00390000013989.b	ENSGT00940000154769	ENSGT00390000012955	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00530000064411.b	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00940000158504 #27	ENSGT00940000155292.db.a	ENSGT00950000182993.A.b.f #26	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b
Characoidei	ANCESTRAL SPECIES	78	ENSGT00940000155713	ENSGT00940000155599.i.a.b	ENSGT00940000155599.i.b	ENSGT00510000046732.A.c	ENSGT00390000005140.a	ENSGT00390000013989.b	ENSGT00940000154769	ENSGT00390000012955	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00530000064411.b	ENSGT00530000063816.c.a	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c #22	ENSGT00390000016532 #24	ENSGT00730000112225	ENSGT00800000124150 #23	ENSGT00390000015433 #25	ENSGT00950000182993.A.b.e #26	ENSGT00940000158504 #27	ENSGT00950000182993.A.b.f #26	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b	ENSGT00940000157435.a.b
Red-bellied piranha	MODERN SPECIES	193	KSR1 (ENSPNAG00000015529)	ENSPNAG00000015327	NF1 (ENSPNAG00000015280)	OMG (ENSPNAG00000014991)	ENSPNAG00000014984	msi2a (ENSPNAG00000014957)	ENSPNAG00000014891	bhlha9 (ENSPNAG00000003312)	WSCD1 (ENSPNAG00000014881)	usp25 (ENSPNAG00000014852)	NRIP1 (ENSPNAG00000003221)	samsn1b (ENSPNAG00000014697)	GDPD5 (ENSPNAG00000014662)	serpinh1a (ENSPNAG00000014640)	SLC1A3 (ENSPNAG00000014623) #21	nipblb (ENSPNAG00000014586) #22	nup155 (ENSPNAG00000014406) #24	ENSPNAG00000014250	ENSPNAG00000005135 #23
Mexicana tetra	MODERN SPECIES	12	FCHSD2 (ENSAMXG00000006752)	fam168a (ENSAMXG00000006758)	plekhb1 (ENSAMXG00000006760)	rab6a (ENSAMXG00000032547)	mrpl48 (ENSAMXG00000006784)	dnajb13 (ENSAMXG00000006806)	ucp2 (ENSAMXG00000006822)	ucp3 (ENSAMXG00000035625)	ENSAMXG00000041245	RSF1 (ENSAMXG00000036069)	ENSAMXG00000033076	ENSAMXG00000034583	ENSAMXG00000038184 #20	ENSAMXG00000039562	slc1a3b (ENSAMXG00000000008) #21	nipblb (ENSAMXG00000006890) #22	nup155 (ENSAMXG00000006908) #24	ENSAMXG00000041226	ENSAMXG00000031985 #23	WDR70 (ENSAMXG00000006938) #25	gdnfa (ENSAMXG00000042733) #26	EGFLAM (ENSAMXG00000006956) #27	opn4xa (ENSAMXG00000006974)	pdlim5b (ENSAMXG00000034634)	bmpr1bb (ENSAMXG00000006998)	UNC5C (ENSAMXG00000007025)	glis3 (ENSAMXG00000019181)	rfx3 (ENSAMXG00000019201)	smad4a (ENSAMXG00000019219)	BMP10 (ENSAMXG00000034592)	npffr1l3 (ENSAMXG00000036599)
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	1048															slc1a3a (ENSEEEG00000016127) #21	nipbla (ENSEEEG00000016122) #22	EGFLAM (ENSEEEG00000016101) #27	pdlim5a (ENSEEEG00000016087)
Electric eel	MODERN SPECIES	69	ENSEEEG00000009193	dhrs13a.1 (ENSEEEG00000009200)	dhrs13a.2 (ENSEEEG00000009362)	FCHSD2 (ENSEEEG00000009364)	fam168a (ENSEEEG00000009366)	ENSEEEG00000009368	rab6a (ENSEEEG00000009370)	mrpl48 (ENSEEEG00000009382)	dnajb13 (ENSEEEG00000009387)	ucp2 (ENSEEEG00000009392)	ucp3 (ENSEEEG00000009394)	ENSEEEG00000009395	ENSEEEG00000009398	ENSEEEG00000009566 #20	slc1a3b (ENSEEEG00000009570) #21	nipblb (ENSEEEG00000009575) #22	nup155 (ENSEEEG00000009580) #24	ENSEEEG00000009623	WDR70 (ENSEEEG00000009637) #25	gdnfa (ENSEEEG00000009703) #26	pdlim5b (ENSEEEG00000009704)	bmpr1bb (ENSEEEG00000009708)	UNC5C (ENSEEEG00000009738)	glis3 (ENSEEEG00000009748)	rfx3 (ENSEEEG00000009754)	smad4a (ENSEEEG00000009764)	ENSEEEG00000009814	npffr1l3 (ENSEEEG00000009817)	ARVCF (ENSEEEG00000009980)	ENSEEEG00000009982	ENSEEEG00000009990
Cyprinoidei	ANCESTRAL SPECIES	16	ENSGT00940000158907.d	ENSGT00390000017457	ENSGT00940000153432.B	ENSGT00500000044987	ENSGT00940000173711	ENSGT00530000063460.A.b #31	ENSGT00390000002096 #30	ENSGT00940000165259.a	ENSGT00940000155776.b #28	ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000005182.k.r.a.b.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c #22	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b	ENSGT00940000155292.db.a	ENSGT00940000160973	ENSGT00940000157435.a.a	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000156901.B	ENSGT00920000149159	ENSGT00940000158897.e.b	ENSGT00940000156515.b	ENSGT00940000162372.b	ENSGT00390000013415.b	ENSGT00940000170274
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	19	ENSGT00940000155855.g	ENSGT00940000158907.d.c.a	ENSGT00940000158907.d.d	ENSGT00390000017457.f	ENSGT00940000153432.B.tb.b	ENSGT00500000044987	ENSGT00530000063460.A.b.f.b.b #31	ENSGT00390000002096.h.b #30	ENSGT00940000155776.b.a.a #28	ENSGT00940000165259.b.b	ENSGT00390000005182.k.r.a.b.b.a.a	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000005182.k.r.a.b.b.a.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b.d #21	ENSGT00390000010427.c.kc.a #22	ENSGT01100000263502.B.a.b.b.b	ENSGT00940000155292.db.a.a.a.a	ENSGT00940000155919.b.a.e.a	ENSGT00950000182815.a.a.a.a.a.d.c.b	ENSGT00940000160973.a	ENSGT00940000157435.a.a.c	ENSGT00730000111224	ENSGT00950000183134.c.b.c	ENSGT00940000156901.B.c	ENSGT00920000149159.e	ENSGT00940000158897.e.b.a	ENSGT00940000158425.b	ENSGT00940000154184.A.u	ENSGT00940000156515.a.b	ENSGT00940000156515.b.d
Goldfish	MODERN SPECIES	44	ENSCARG00000041681	fgf10b (ENSCARG00000041711)	ENSCARG00000041728	mybbp1a (ENSCARG00000041801)	paip1 (ENSCARG00000042011)	zgc:153352 (ENSCARG00000042184)	RICTOR (ENSCARG00000042256) #30	ENSCARG00000042760 #28	lifra (ENSCARG00000000172)	ENSCARG00000000200	ENSCARG00000000216	ENSCARG00000000226	ENSCARG00000000247	lmbrd2a (ENSCARG00000000384) #17	slc1a3a (ENSCARG00000000482) #21	nipbla (ENSCARG00000000523) #22	opn4xb (ENSCARG00000000590)	pdlim5a (ENSCARG00000000615)	bmpr1ba (ENSCARG00000000659)	ENSCARG00000000688	MEX3C (ENSCARG00000000690)	SMAD4 (ENSCARG00000000700)	elac1 (ENSCARG00000000717)	me2 (ENSCARG00000000741)	ENSCARG00000000786	ostf1 (ENSCARG00000000816)	pxna (ENSCARG00000000894)	crybb3 (ENSCARG00000000908)	ENSCARG00000000911	MSI1 (ENSCARG00000000923)	ENSCARG00000000935
Cyprininae_a	ANCESTRAL SPECIES	199	ENSGT00940000155855.g	ENSGT00940000158907.d.c.a	ENSGT00940000158907.d.d	ENSGT00390000017457.f	ENSGT00940000153432.B.tb.b	ENSGT00500000044987	ENSGT00530000063460.A.b.f.b.b #31	ENSGT00390000002096.h.b #30	ENSGT00940000155776.b.a.a #28	ENSGT00940000165259.b.b	ENSGT00390000005182.k.r.a.b.b.a.a	ENSGT00390000005182.k.r.a.b.a	ENSGT00390000005182.k.r.a.b.b.a.b	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b.d #21	ENSGT00390000010427.c.kc.a #22	ENSGT01100000263502.B.a.b.b.b	ENSGT00940000155292.db.a.a.a.a	ENSGT00940000155919.b.a.e.a	ENSGT00950000182815.a.a.a.a.a.d.c.b	ENSGT00940000160973.a	ENSGT00940000157435.a.a.c	ENSGT00730000111224	ENSGT00950000183134.c.b.c	ENSGT00940000156901.B.c	ENSGT00920000149159.e	ENSGT00940000158897.e.b.a	ENSGT00940000158425.b.c	ENSGT00940000154184.A.u.b	ENSGT00940000156515.a.b	ENSGT00940000156515.b.d
Common carp reference	MODERN SPECIES	7	ENSCCRG00000001461	fgf10b (ENSCCRG00000071796)	ENSCCRG00000017606	mybbp1a (ENSCCRG00000010123)	paip1 (ENSCCRG00000010039)	zgc:153352 (ENSCCRG00000060175)	ENSCCRG00000063980 #31	ENSCCRG00000011136 #30	ENSCCRG00000011126 #28	lifra (ENSCCRG00000011111)	ENSCCRG00000074271	ENSCCRG00000064212	ENSCCRG00000065610	lmbrd2a (ENSCCRG00000010996) #17	slc1a3a (ENSCCRG00000072252) #21	nipbla (ENSCCRG00000016976) #22	ENSCCRG00000063750 #26	opn4xb (ENSCCRG00000051302)	pdlim5a (ENSCCRG00000051309)	bmpr1ba (ENSCCRG00000071840)	UNC5C (ENSCCRG00000021969)	ENSCCRG00000054822	MEX3C (ENSCCRG00000021262)	ENSCCRG00000076206	me2 (ENSCCRG00000059443)	ENSCCRG00000003274	ostf1 (ENSCCRG00000003120)	pxna (ENSCCRG00000003089)	crybb3 (ENSCCRG00000077404)	ENSCCRG00000070289	msi1a (ENSCCRG00000030590)
Golden-line barbel	MODERN SPECIES	1532												ENSSGRG00000028045	ENSSGRG00000028047	lmbrd2a (ENSSGRG00000028064) #17	slc1a3a (ENSSGRG00000028401) #21	nipbla (ENSSGRG00000028413) #22
Cyprininae	ANCESTRAL SPECIES	25	ENSGT00390000008853.e	ENSGT00940000157438.c.b	ENSGT00390000015494	ENSGT00940000156161.B.o.a	ENSGT01030000234574.B.c.b.a.a.b.b	ENSGT00940000155855.h	ENSGT00940000158907.d.c.b	ENSGT00390000017457.e	ENSGT00940000153432.B.tb.a	ENSGT00530000063460.A.b.f.b.a #31	ENSGT00390000002096.h.a #30	ENSGT00940000155776.b.b #28	ENSGT00940000165259.b.a	ENSGT00390000008160 #14	ENSGT00940000155464.a.b.c #21	ENSGT00390000010427.c.kc.b #22	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b.a	ENSGT00940000155292.db.a.b	ENSGT00940000155919.b.a.e.b	ENSGT00950000182815.a.a.a.a.a.d.c.a	ENSGT00390000001063	ENSGT00940000160973.b	ENSGT00940000157435.a.a.d	ENSGT00950000183134.c.b.d	ENSGT00940000156901.B.d	ENSGT00920000149159.f	ENSGT00940000158897.e.b.b	ENSGT00940000156515.b.c	ENSGT00940000162372.b.b
Cyprininae_a	ANCESTRAL SPECIES	26	ENSGT00940000157438.c.b	ENSGT00390000005102.id.a	ENSGT00390000015494	ENSGT00940000156161.B.o.a	ENSGT01030000234574.B.c.b.a.a.b.b	ENSGT00940000155855.h	ENSGT00940000158907.d.c.b	ENSGT00390000017457.e	ENSGT00940000153432.B.tb.a	ENSGT00530000063460.A.b.f.b.a #31	ENSGT00390000002096.h.a #30	ENSGT00940000155776.b.b #28	ENSGT00940000165259.b.a	ENSGT00390000008160 #14	ENSGT00940000155464.a.b.c #21	ENSGT00390000010427.c.kc.b #22	ENSGT00950000182993.A.b.f #26	ENSGT00940000158504 #27	ENSGT01100000263502.B.a.b.b.a	ENSGT00940000155292.db.a.b	ENSGT00940000155919.b.a.e.b	ENSGT00950000182815.a.a.a.a.a.d.c.a	ENSGT00390000001063	ENSGT00940000160973.b	ENSGT00940000157435.a.a.d	ENSGT00950000183134.c.b.d	ENSGT00940000156901.B.d	ENSGT00920000149159.f	ENSGT00940000158897.e.b.b	ENSGT00940000158425.b.d	ENSGT00940000154184.A.u.a
Golden-line barbel	MODERN SPECIES	185	rchy1 (ENSSGRG00000021379)	kcnv2b (ENSSGRG00000021377)	atp5meb (ENSSGRG00000021376)	tnksb (ENSSGRG00000020054)	agpat9l (ENSSGRG00000020011)	ENSSGRG00000020007	fgf10b (ENSSGRG00000020006)	ENSSGRG00000020005	mybbp1a (ENSSGRG00000020004)	paip1 (ENSSGRG00000019853)	RICTOR (ENSSGRG00000019679) #30	ENSSGRG00000019671 #28	lifra (ENSSGRG00000019666)	spef2 (ENSSGRG00000019658) #14	slc1a3a (ENSSGRG00000019065) #21	nipbla (ENSSGRG00000017474) #22	opn4xb (ENSSGRG00000017430)	pdlim5a (ENSSGRG00000017417)	bmpr1ba (ENSSGRG00000017076)	UNC5C (ENSSGRG00000016933)	STPG2 (ENSSGRG00000016931)	MEX3C (ENSSGRG00000016930)	SMAD4 (ENSSGRG00000016929)	me2 (ENSSGRG00000016373)	ENSSGRG00000016339	ostf1 (ENSSGRG00000016335)	ENSSGRG00000016333	crybb3 (ENSSGRG00000016329)	tnks1bp1 (ENSSGRG00000016328)	MSI1 (ENSSGRG00000015587)	ENSSGRG00000015573
Common carp reference	MODERN SPECIES	15	ENSCCRG00000049716	tnksb (ENSCCRG00000050090)	agpat9l (ENSCCRG00000009242)	ENSCCRG00000076197	ENSCCRG00000010782	fgf10b (ENSCCRG00000010981)	ENSCCRG00000066419	mybbp1a (ENSCCRG00000010060)	paip1 (ENSCCRG00000041558)	ENSCCRG00000054002 #31	ENSCCRG00000014850 #30	ENSCCRG00000073320 #28	lifra (ENSCCRG00000058318)	spef2 (ENSCCRG00000011607) #14	slc1a3a (ENSCCRG00000017031) #21	nipbla (ENSCCRG00000036463) #22	ENSCCRG00000054400 #26	ENSCCRG00000031725 #27	opn4xb (ENSCCRG00000049757)	pdlim5a (ENSCCRG00000051306)	bmpr1ba (ENSCCRG00000021974)	UNC5C (ENSCCRG00000070864)	STPG2 (ENSCCRG00000008402)	ENSCCRG00000020234	me2 (ENSCCRG00000031582)	ENSCCRG00000082758	MEX3C (ENSCCRG00000008400)	ostf1 (ENSCCRG00000081315)	pxna (ENSCCRG00000026270)	ENSCCRG00000070382	ENSCCRG00000065485
Goldfish	MODERN SPECIES	51	ENSCARG00000051822	fgf10b (ENSCARG00000052589)	paip1 (ENSCARG00000052599)	ENSCARG00000052656	mybbp1a (ENSCARG00000052698)	paip1 (ENSCARG00000052982)	ENSCARG00000053064 #31	RICTOR (ENSCARG00000053148) #30	lifra (ENSCARG00000055068)	spef2 (ENSCARG00000055357) #14	ENSCARG00000055753	ENSCARG00000055780	ENSCARG00000055788	ENSCARG00000055844	slc1a3a (ENSCARG00000055858) #21	nipbla (ENSCARG00000056015) #22	EGFLAM (ENSCARG00000056418) #27	opn4xb (ENSCARG00000056667)	pdlim5a (ENSCARG00000056709)	opn4xb (ENSCARG00000056870)	ENSCARG00000056911	ENSCARG00000056917	bmpr1ba (ENSCARG00000056940)	UNC5C (ENSCARG00000057249)	ENSCARG00000057831	STPG2 (ENSCARG00000057842)	ENSCARG00000057887	me2 (ENSCARG00000057920)	ENSCARG00000058276	ostf1 (ENSCARG00000058282)	pxna (ENSCARG00000058319)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	211	ENSGT00940000155932.b.b.a	ENSGT00940000155768.A.a	ENSGT00940000156995.b.a	ENSGT00940000155713.z.b	ENSGT00940000155599.i.a.b.i	ENSGT00940000155599.i.b.b	ENSGT00510000046732.A.c.a	ENSGT00390000013989.b.c	ENSGT00940000154769.hd.a	ENSGT00390000012955.a	ENSGT00940000158090.i	ENSGT00940000159524.h	ENSGT00940000165592.b.h	ENSGT00530000064411.b.b	ENSGT00940000155464.a.a.b #21	ENSGT00390000010427.c.lc.a #22
Cyprininae_a	ANCESTRAL SPECIES	11	ENSGT00940000155932.b.b.a	ENSGT00940000155768.A.a.b	ENSGT00940000156995.b.a	ENSGT00940000155713.z.b	ENSGT00940000155599.i.a.b.i	ENSGT00940000155599.i.b.b	ENSGT00510000046732.A.c.a	ENSGT00390000013989.b.c	ENSGT00940000154769.hd.a	ENSGT00390000012955.a	ENSGT00940000158090.i	ENSGT00940000159524.h	ENSGT00940000165592.b.h	ENSGT00530000064411.b.b	ENSGT00940000155464.a.a.b #21	ENSGT00390000010427.c.lc.a #22	ENSGT00390000018451	ENSGT00940000158706.b	ENSGT00390000002316.f	ENSGT00950000183120.i.b	ENSGT00940000156630.m	ENSGT00390000004952.b	ENSGT00940000161369.B.b.b.r.d.b	ENSGT00950000182847.b.b.a.b.g.b.j.b	ENSGT00950000182847.b.b.a.b.g.a.c.a.b.a.b.b	ENSGT00950000182847.b.b.a.b.g.a.c.b	ENSGT00950000182847.b.b.b.c.a.b	ENSGT00940000161369.A.x	ENSGT00950000182847.b.b.a.b.g.b.j.a.b	ENSGT00950000182847.b.b.b.c.a.a.b	ENSGT00390000008503
Golden-line barbel	MODERN SPECIES	31	ENSSGRG00000028506	ENSSGRG00000025477	SEZ6 (ENSSGRG00000025423)	PHF12 (ENSSGRG00000025419)	dhrs13a.1 (ENSSGRG00000025418)	dhrs13a.2 (ENSSGRG00000025417)	ENSSGRG00000025415	plekhb1 (ENSSGRG00000025414)	rab6a (ENSSGRG00000025413)	mrpl48 (ENSSGRG00000025412)	dnajb13 (ENSSGRG00000025411)	ucp2 (ENSSGRG00000025372)	ucp3 (ENSSGRG00000025362)	ENSSGRG00000025361	slc1a3b (ENSSGRG00000025358) #21	nipblb (ENSSGRG00000025319) #22	alox5ap (ENSSGRG00000025306)	uspl1 (ENSSGRG00000025305)	hmgb1a (ENSSGRG00000025289)	katnal1 (ENSSGRG00000025226)	ubl3a (ENSSGRG00000025218)	or30bu2 (ENSSGRG00000025217)	ENSSGRG00000025216	ENSSGRG00000025215	ENSSGRG00000025214	or42a4 (ENSSGRG00000025213)	ENSSGRG00000025212	ENSSGRG00000025211	ENSSGRG00000025210	smyd4 (ENSSGRG00000025209)	RTN4RL1 (ENSSGRG00000025208)
Common carp reference	MODERN SPECIES	32	ENSCCRG00000052969	ENSCCRG00000048965	cuedc1a (ENSCCRG00000057828)	ENSCCRG00000015860	ENSCCRG00000015947	SEZ6 (ENSCCRG00000025717)	ENSCCRG00000070095	dhrs13a.2 (ENSCCRG00000060856)	plekhb1 (ENSCCRG00000027618)	rab6a (ENSCCRG00000027433)	dnajb13 (ENSCCRG00000078671)	ucp2 (ENSCCRG00000070618)	ucp3 (ENSCCRG00000073199)	ENSCCRG00000027392	slc1a3b (ENSCCRG00000059091) #21	nipblb (ENSCCRG00000059180) #22	ENSCCRG00000070162	alox5ap (ENSCCRG00000027047)	uspl1 (ENSCCRG00000075424)	ENSCCRG00000078538	KATNAL1 (ENSCCRG00000073080)	UBL3 (ENSCCRG00000082085)	ENSCCRG00000072414	ENSCCRG00000080493	ENSCCRG00000071061	ENSCCRG00000060491	ENSCCRG00000027029	ENSCCRG00000033861	ENSCCRG00000061268	ENSCCRG00000056405	ENSCCRG00000060266
Goldfish	MODERN SPECIES	28	ENSCARG00000022504	cuedc1a (ENSCARG00000022489)	ENSCARG00000022481	ENSCARG00000015483	SEZ6 (ENSCARG00000015294)	PHF12 (ENSCARG00000015254)	dhrs13a.1 (ENSCARG00000015240)	dhrs13a.2 (ENSCARG00000015213)	plekhb1 (ENSCARG00000015205)	rab6a (ENSCARG00000015148)	mrpl48 (ENSCARG00000015135)	ucp2 (ENSCARG00000015127)	ENSCARG00000015116	ENSCARG00000015058	slc1a3b (ENSCARG00000015042) #21	nipblb (ENSCARG00000014888) #22	PTRH2 (ENSCARG00000014844)	alcama (ENSCARG00000014386)	CBLB (ENSCARG00000014271)	ints2 (ENSCARG00000013809)	BBX (ENSCARG00000013768)	ENSCARG00000013758	btg3 (ENSCARG00000013751)	cltca (ENSCARG00000011125)	PTRH2 (ENSCARG00000011040)	ENSCARG00000009681	rnft1 (ENSCARG00000009638)	med13a (ENSCARG00000009000)	ints2 (ENSCARG00000008663)	AUTS2 (ENSCARG00000007769)	cxadr (ENSCARG00000007678)
Cyprininae	ANCESTRAL SPECIES	10	ENSGT00940000155932.b.b.b	ENSGT00940000155768.A.b	ENSGT00940000156995.b.b	ENSGT00940000155713.z.a	ENSGT00940000155599.i.a.b.j	ENSGT00940000155599.i.b.a	ENSGT00510000046732.A.c.b	ENSGT00390000013989.b.d	ENSGT00940000154769.hd.b	ENSGT00390000012955.b	ENSGT00940000158090.j	ENSGT00940000159524.g	ENSGT00940000165592.b.g	ENSGT00530000064411.b.a	ENSGT00940000155464.a.a.a #21	ENSGT00390000010427.c.lc.b #22	ENSGT00940000158706.a	ENSGT00390000002316.e	ENSGT00950000183120.j.a.a	ENSGT00940000156630.n	ENSGT00390000004952.a.a	ENSGT00940000161369.B.b.b.r.d.b	ENSGT00950000182847.b.b.a.b.g.b.j.b	ENSGT00950000182847.b.b.a.b.g.a.c.a.b.a.b.b	ENSGT00950000182847.b.b.a.b.g.a.c.b	ENSGT00950000182847.b.b.b.c.a.b	ENSGT00950000182847.b.b.b.c.a.a.b	ENSGT00390000008503	ENSGT00950000182847.b.b.b.c.b.b	ENSGT00940000154868.b.g	ENSGT00730000111079.b
Goldfish	MODERN SPECIES	1	ENSCARG00000026781	ENSCARG00000021166	SEZ6 (ENSCARG00000020865)	PHF12 (ENSCARG00000019978)	dhrs13a.1 (ENSCARG00000019954)	dhrs13a.2 (ENSCARG00000019947)	FCHSD2 (ENSCARG00000019875)	plekhb1 (ENSCARG00000019855)	rab6a (ENSCARG00000019796)	mrpl48 (ENSCARG00000019779)	dnajb13 (ENSCARG00000019767)	ucp2 (ENSCARG00000019754)	ucp3 (ENSCARG00000019740)	ENSCARG00000019714	slc1a3b (ENSCARG00000019655) #21	nipblb (ENSCARG00000019567) #22	alox5ap (ENSCARG00000019547)	uspl1 (ENSCARG00000019545)	hmgb1a (ENSCARG00000019532)	katnal1 (ENSCARG00000019484)	ubl3a (ENSCARG00000019469)	zar1l (ENSCARG00000019458)	ENSCARG00000019455	KL (ENSCARG00000019435)	rfc3 (ENSCARG00000019415)	ENSCARG00000019408	ska2 (ENSCARG00000019397)	ENSCARG00000019391	ENSCARG00000019379	PRDM15 (ENSCARG00000019320)	tbl2 (ENSCARG00000019289)
Cyprininae_a	ANCESTRAL SPECIES	278	ENSGT00940000155932.b.b.b	ENSGT00940000155768.A.a.a	ENSGT00940000156995.b.b	ENSGT00940000155713.z.a	ENSGT00940000155599.i.a.b.j	ENSGT00940000155599.i.b.a	ENSGT00510000046732.A.c.b	ENSGT00390000013989.b.d	ENSGT00940000154769.hd.b	ENSGT00390000012955.b	ENSGT00940000158090.j	ENSGT00940000159524.g	ENSGT00940000165592.b.g	ENSGT00530000064411.b.a	ENSGT00940000155464.a.a.a #21	ENSGT00390000010427.c.lc.b #22	ENSGT00940000158706.a	ENSGT00390000002316.e	ENSGT00950000183120.j.a.a	ENSGT00940000156630.n	ENSGT00390000004952.a.a	ENSGT00940000161369.B.b.b.r.d.a.a	ENSGT00940000161369.B.b.b.q.a.b	ENSGT00940000161369.A.w.b	ENSGT00950000182847.b.b.a.b.g.a.c.a.b.a.a.b	ENSGT00950000182847.b.b.a.b.g.a.c.a.a.a.b
Common carp reference	MODERN SPECIES	24	ENSCCRG00000077097	cuedc1a (ENSCCRG00000015813)	ENSCCRG00000080937	ENSCCRG00000025061	ENSCCRG00000006338	ENSCCRG00000053021	ENSCCRG00000064313	plekhb1 (ENSCCRG00000014728)	rab6a (ENSCCRG00000014747)	mrpl48 (ENSCCRG00000062776)	dnajb13 (ENSCCRG00000027417)	ucp2 (ENSCCRG00000029489)	ucp3 (ENSCCRG00000029484)	ENSCCRG00000080255	slc1a3b (ENSCCRG00000027113) #21	nipblb (ENSCCRG00000061368) #22	ENSCCRG00000006347	alox5ap (ENSCCRG00000072124)	uspl1 (ENSCCRG00000027038)	ENSCCRG00000077130	KATNAL1 (ENSCCRG00000027036)	ubl3a (ENSCCRG00000061362)	ENSCCRG00000050112	ENSCCRG00000050109	or30bv1 (ENSCCRG00000077225)	or80a8 (ENSCCRG00000067512)	ENSCCRG00000082802	ENSCCRG00000060091	ENSCCRG00000050102	ENSCCRG00000079214	ENSCCRG00000037529
Golden-line barbel	MODERN SPECIES	52	cuedc1a (ENSSGRG00000025149)	ENSSGRG00000025147	ENSSGRG00000021996	PHF12 (ENSSGRG00000021857)	dhrs13a.1 (ENSSGRG00000021847)	dhrs13a.2 (ENSSGRG00000021843)	FCHSD2 (ENSSGRG00000021786)	plekhb1 (ENSSGRG00000021780)	rab6a (ENSSGRG00000021394)	mrpl48 (ENSSGRG00000021391)	dnajb13 (ENSSGRG00000021382)	ucp2 (ENSSGRG00000021349)	ucp3 (ENSSGRG00000021322)	ENSSGRG00000021318	slc1a3b (ENSSGRG00000021315) #21	nipblb (ENSSGRG00000019881) #22	ENSSGRG00000019856	alox5ap (ENSSGRG00000019855)	uspl1 (ENSSGRG00000019854)	hmgb1a (ENSSGRG00000019811)	katnal1 (ENSSGRG00000019483)	ubl3a (ENSSGRG00000019476)	or30bv1 (ENSSGRG00000019475)	or80a8 (ENSSGRG00000019474)	ENSSGRG00000019468	ENSSGRG00000019466	ENSSGRG00000019465	ENSSGRG00000019463
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	20	ENSDARG00000067549	fgf10b (ENSDARG00000100475)	ENSDARG00000115465	mybbp1a (ENSDARG00000078214)	paip1 (ENSDARG00000042892)	zgc:153352 (ENSDARG00000092445)	ENSDARG00000094764 #31	RICTOR (ENSDARG00000100867) #30	ENSDARG00000100738 #28	lifra (ENSDARG00000098857)	spef2 (ENSDARG00000098330) #14	ENSDARG00000101104	ENSDARG00000101556	lmbrd2a (ENSDARG00000099566) #17	slc1a3a (ENSDARG00000104431) #21	nipbla (ENSDARG00000098272) #22	GDNF (ENSDARG00000103764) #26	EGFLAM (ENSDARG00000099008) #27	opn4xb (ENSDARG00000103259)	pdlim5a (ENSDARG00000101777)	ENSDARG00000116302	bmpr1ba (ENSDARG00000104100)	UNC5C (ENSDARG00000099133)	ENSDARG00000104724	ENSDARG00000076082	ENSDARG00000061060	SMAD4 (ENSDARG00000012649)	elac1 (ENSDARG00000045095)	me2 (ENSDARG00000100718)	ENSDARG00000076853	ostf1 (ENSDARG00000091555)
Zebrafish	MODERN SPECIES	1	SEZ6 (ENSDARG00000100876)	PHF12 (ENSDARG00000074303)	dhrs13a.1 (ENSDARG00000026322)	dhrs13a.2 (ENSDARG00000111240)	FCHSD2 (ENSDARG00000091428)	plekhb1 (ENSDARG00000063519)	ENSDARG00000088502	rab6a (ENSDARG00000103714)	mrpl48 (ENSDARG00000035167)	dnajb13 (ENSDARG00000043157)	ucp2 (ENSDARG00000043154)	ucp3 (ENSDARG00000091209)	ENSDARG00000093503	ENSDARG00000068640	slc1a3b (ENSDARG00000043148) #21	nipblb (ENSDARG00000061052) #22	alox5ap (ENSDARG00000054755)	uspl1 (ENSDARG00000034825)	ubl3a (ENSDARG00000099532)	or30bu1 (ENSDARG00000101806)	or30bu2 (ENSDARG00000068659)	or30bv1 (ENSDARG00000068660)	or80a13 (ENSDARG00000068661)	or80a1 (ENSDARG00000103685)	or80a8 (ENSDARG00000103418)	or80a4 (ENSDARG00000102614)	or80a9 (ENSDARG00000100410)	or80a3 (ENSDARG00000103192)	or80a7 (ENSDARG00000102921)	or80a5 (ENSDARG00000101554)	or80a11 (ENSDARG00000102933)
Clupeiformes	DUPLICATION
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	531											ENSGT00940000165259.b	ENSGT00390000008160 #14	ENSGT00940000161263 #16	ENSGT00390000018651.b #17	ENSGT00940000155464.a.b #21	ENSGT00390000010427.c.oc.a #22	ENSGT00950000182993.A.b.f #26
Denticle herring	MODERN SPECIES	2	ENSDCDG00000005265	ENSDCDG00000005266	ENSDCDG00000005268	ENSDCDG00000005270	ENSDCDG00000005272	ENSDCDG00000005274	ENSDCDG00000005275	ENSDCDG00000005277	ENSDCDG00000005278	camsap1b (ENSDCDG00000005284)	ubac1 (ENSDCDG00000005317)	lifra (ENSDCDG00000005323)	spef2 (ENSDCDG00000005328) #14	lmbrd2a (ENSDCDG00000005353) #17	slc1a3a (ENSDCDG00000005563) #21	nipbla (ENSDCDG00000005824) #22	GDNF (ENSDCDG00000013168) #26	EGFLAM (ENSDCDG00000013211) #27	opn4xb (ENSDCDG00000013249)	pdlim5a (ENSDCDG00000013256)	bmpr1ba (ENSDCDG00000013271)	UNC5C (ENSDCDG00000013331)	ENSDCDG00000013360	bmpr1ba (ENSDCDG00000013370)	ENSDCDG00000013403	STPG2 (ENSDCDG00000013456)	MEX3C (ENSDCDG00000013473)	SMAD4 (ENSDCDG00000013528)	elac1 (ENSDCDG00000013670)	me2 (ENSDCDG00000013695)	mapk4 (ENSDCDG00000013888)
Atlantic herring	MODERN SPECIES	23	epg5 (ENSCHAG00000020254)	dnajb5 (ENSCHAG00000020223)	akr1a1a (ENSCHAG00000020098)	vcp (ENSCHAG00000019611)	fancg (ENSCHAG00000019588)	EEF2 (ENSCHAG00000018904)	pias2 (ENSCHAG00000017215)	ENSCHAG00000017160	RICTOR (ENSCHAG00000015143) #30	ENSCHAG00000015001 #28	lifra (ENSCHAG00000014794)	spef2 (ENSCHAG00000014510) #14	UGT3A2 (ENSCHAG00000014471) #16	lmbrd2a (ENSCHAG00000013430) #17	slc1a3a (ENSCHAG00000013333) #21	nipbla (ENSCHAG00000013147) #22	GDNF (ENSCHAG00000013121) #26	EGFLAM (ENSCHAG00000012688) #27	opn4xb (ENSCHAG00000012656)	pdlim5a (ENSCHAG00000012627)	bmpr1ba (ENSCHAG00000012209)	UNC5C (ENSCHAG00000008751)	STPG2 (ENSCHAG00000008638)	MEX3C (ENSCHAG00000008582)	SMAD4 (ENSCHAG00000008303)	elac1 (ENSCHAG00000008288)	me2 (ENSCHAG00000006953)	mapk4 (ENSCHAG00000006890)	tspan36 (ENSCHAG00000006868)	si:ch211-103n10.5 (ENSCHAG00000006861)	mpeg1.2 (ENSCHAG00000006843)
Clupeiformes	ANCESTRAL SPECIES	559												ENSGT00390000007918 #18	ENSGT00390000006320 #19	ENSGT00940000161387 #20	ENSGT00940000155464.a.a #21	ENSGT00390000010427.c.oc.b #22	ENSGT00390000016532 #24
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000015597	ap1s2 (ENSCHAG00000015620)	ZRSR2 (ENSCHAG00000015713)	rbb4l (ENSCHAG00000015783)	txlng (ENSCHAG00000016421)	SYAP1 (ENSCHAG00000016572)	p2rx4a (ENSCHAG00000016634)	ENSCHAG00000016945	chchd10 (ENSCHAG00000016962)	MMP11 (ENSCHAG00000016997)	smarcb1b (ENSCHAG00000017037)	skp2 (ENSCHAG00000017176) #18	nadk2 (ENSCHAG00000017218) #19	RANBP3L (ENSCHAG00000017241) #20	SLC1A3 (ENSCHAG00000017252) #21	NIPBL (ENSCHAG00000017290) #22	nup155 (ENSCHAG00000017637) #24	ENSCHAG00000017871	ENSCHAG00000018243	ENSCHAG00000018492	lin54 (ENSCHAG00000019229)	ENSCHAG00000019406	ENSCHAG00000019411	ENSCHAG00000019439	nhp2 (ENSCHAG00000019454)	ENSCHAG00000019469	ATP7B (ENSCHAG00000019567)	ENSCHAG00000021521	ENSCHAG00000021530	ENSCHAG00000021535	ENSCHAG00000021551
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00390000010427.c.pc #22
Denticle herring	MODERN SPECIES	15	irx4a (ENSDCDG00000033130)	irx2a (ENSDCDG00000033126)	ENSDCDG00000033125	ENSDCDG00000033123	arglu1b (ENSDCDG00000033120)	efnb2b (ENSDCDG00000033116)	mxa (ENSDCDG00000032679)	pcnp (ENSDCDG00000032649)	ptpra (ENSDCDG00000029648)	gnrh2 (ENSDCDG00000029490)	DMD (ENSDCDG00000028820)	slc1a3b (ENSDCDG00000028721) #21	idh3b (ENSDCDG00000028276)	nadk2 (ENSDCDG00000028249) #19	skp2 (ENSDCDG00000028247) #18	NIPBL (ENSDCDG00000027806) #22	pip5k1ba (ENSDCDG00000027588)	tjp2a (ENSDCDG00000027413)	smc5 (ENSDCDG00000027386)	zfand5b (ENSDCDG00000027382)	erbin (ENSDCDG00000026269)	sgtb (ENSDCDG00000026236)	trappc13 (ENSDCDG00000026228)	trim23 (ENSDCDG00000026103)	ppwd1 (ENSDCDG00000026099)	srek1ip1 (ENSDCDG00000026096)	cwc27 (ENSDCDG00000026093)	ENSDCDG00000026089	ADAMTS6 (ENSDCDG00000026082)	cops4 (ENSDCDG00000026062)	lin54 (ENSDCDG00000025891)