Murinae	ANCESTRAL SPECIES	12	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915	ENSGT00940000154390.A.j #29	ENSGT00390000011179 #30	ENSGT00940000153661.a.b.a.a.a.b #31	ENSGT00390000005772 #32	ENSGT00390000017751 #33	ENSGT00940000154006.a #34	ENSGT00940000158390 #35	ENSGT00940000161542 #36
Mus	ANCESTRAL SPECIES	14	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915	ENSGT00940000154390.A.j #29	ENSGT00390000011179 #30	ENSGT00940000153661.a.b.a.a.a.b #31	ENSGT00390000005772 #32	ENSGT00390000017751 #33	ENSGT00940000154006.a #34	ENSGT00940000158390 #35	ENSGT00940000161542 #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r	ENSGT00940000154390.A.j #29	ENSGT00390000011179 #30	ENSGT00940000153661.a.b.a.a.a.b #31	ENSGT00390000005772 #32	ENSGT00390000017751 #33	ENSGT00940000154006.a #34	ENSGT00940000158390 #35	ENSGT00940000161542 #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r	ENSGT00940000154390.A.j #29	ENSGT00390000011179 #30	ENSGT00940000153661.a.b.a.a.a.b #31	ENSGT00390000005772 #32	ENSGT00390000017751 #33	ENSGT00940000154006.a #34	ENSGT00940000158390 #35	ENSGT00940000161542 #36
Mouse	MODERN SPECIES	2	Tbrg4 (ENSMUSG00000000384) #7	Nacad (ENSMUSG00000041073) #8	Ccm2 (ENSMUSG00000000378) #9	Myo1g (ENSMUSG00000020437) #10	Purb (ENSMUSG00000094483) #11	H2az2 (ENSMUSG00000041126) #12	Ppia (ENSMUSG00000071866) #13	Zmiz2 (ENSMUSG00000041164) #14	Ogdh (ENSMUSG00000020456) #15	Tmed4 (ENSMUSG00000004394) #16	Ddx56 (ENSMUSG00000004393) #17	Npc1l1 (ENSMUSG00000020447) #18	Nudcd3 (ENSMUSG00000053838) #19	Camk2b (ENSMUSG00000057897) #20	Ykt6 (ENSMUSG00000002741) #21	Gck (ENSMUSG00000041798) #22	Myl7 (ENSMUSG00000020469) #23	Pold2 (ENSMUSG00000020471) #24	Aebp1 (ENSMUSG00000020473) #25	Polm (ENSMUSG00000020474) #26	Pgam2 (ENSMUSG00000020475) #27	Dbnl (ENSMUSG00000020476) #28	Urgcp (ENSMUSG00000049680) #29	Mrps24 (ENSMUSG00000020477) #30	Ankrd36 (ENSMUSG00000020481) #31	Ccdc117 (ENSMUSG00000020482) #32	Xbp1 (ENSMUSG00000020484) #33	Znrf3 (ENSMUSG00000041961) #34	Kremen1 (ENSMUSG00000020393) #35	Emid1 (ENSMUSG00000034164) #36	Rhbdd3 (ENSMUSG00000034175) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r	ENSGT00940000154390.A.j #29	ENSGT00390000011179 #30	ENSGT00940000153661.a.b.a.a.a.b #31	ENSGT00390000005772 #32	ENSGT00390000017751 #33	ENSGT00940000154006.a #34	ENSGT00940000158390 #35	ENSGT00940000161542 #36
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0016920 #8	Ccm2 (MGP_SPRETEiJ_G0016919) #9	Myo1g (MGP_SPRETEiJ_G0016918) #10	Purb (MGP_SPRETEiJ_G0016917) #11	H2az2 (MGP_SPRETEiJ_G0016916) #12	Ppia (MGP_SPRETEiJ_G0016915) #13	Zmiz2 (MGP_SPRETEiJ_G0016914) #14	Ogdh (MGP_SPRETEiJ_G0016913) #15	Tmed4 (MGP_SPRETEiJ_G0016912) #16	Ddx56 (MGP_SPRETEiJ_G0016911) #17	Npc1l1 (MGP_SPRETEiJ_G0016910) #18	MGP_SPRETEiJ_G0016909	Nudcd3 (MGP_SPRETEiJ_G0016908) #19	Camk2b (MGP_SPRETEiJ_G0016907) #20	Ykt6 (MGP_SPRETEiJ_G0016906) #21	Gck (MGP_SPRETEiJ_G0016905) #22	Myl7 (MGP_SPRETEiJ_G0016904) #23	Pold2 (MGP_SPRETEiJ_G0016903) #24	Aebp1 (MGP_SPRETEiJ_G0016902) #25	Polm (MGP_SPRETEiJ_G0016901) #26	Pgam2 (MGP_SPRETEiJ_G0016900) #27	Dbnl (MGP_SPRETEiJ_G0016899) #28	Urgcp (MGP_SPRETEiJ_G0016898) #29	Mrps24 (MGP_SPRETEiJ_G0016897) #30	Ankrd36 (MGP_SPRETEiJ_G0016896) #31	Ccdc117 (MGP_SPRETEiJ_G0016895) #32	MGP_SPRETEiJ_G0016894 #33	Znrf3 (MGP_SPRETEiJ_G0016893) #34	Kremen1 (MGP_SPRETEiJ_G0016892) #35	Emid1 (MGP_SPRETEiJ_G0016891) #36	Rhbdd3 (MGP_SPRETEiJ_G0016890) #37
Steppe mouse	MODERN SPECIES	3215	Tbrg4 (ENSMSIG00000023048) #7	Nacad (ENSMSIG00000023028) #8	Ccm2 (ENSMSIG00000022897) #9	Myo1g (ENSMSIG00000022846) #10	ENSMSIG00000022839 #11	H2az2 (ENSMSIG00000022792) #12	ENSMSIG00000022760 #13	Zmiz2 (ENSMSIG00000022569) #14	Ogdh (ENSMSIG00000022343) #15	Tmed4 (ENSMSIG00000022316) #16	Ddx56 (ENSMSIG00000022266) #17	Npc1l1 (ENSMSIG00000022038) #18	Nudcd3 (ENSMSIG00000021993) #19	Camk2b (ENSMSIG00000019343) #20	ENSMSIG00000019289 #21	Gck (ENSMSIG00000019231) #22	Myl7 (ENSMSIG00000019206) #23	Pold2 (ENSMSIG00000019181) #24	Aebp1 (ENSMSIG00000019091) #25	Polm (ENSMSIG00000019034) #26	Pgam2 (ENSMSIG00000019017) #27	Dbnl (ENSMSIG00000018944) #28	ENSMSIG00000018927	Urgcp (ENSMSIG00000018825) #29	ENSMSIG00000018806 #30	Ankrd36 (ENSMSIG00000018767) #31	Ccdc117 (ENSMSIG00000018735) #32	ENSMSIG00000018714 #33	ENSMSIG00000018656 #35	Emid1 (ENSMSIG00000018580) #36	Rhbdd3 (ENSMSIG00000018562) #37
Ryukyu mouse	MODERN SPECIES	2	Tbrg4 (MGP_CAROLIEiJ_G0016079) #7	Nacad (MGP_CAROLIEiJ_G0016078) #8	Ccm2 (MGP_CAROLIEiJ_G0016077) #9	Myo1g (MGP_CAROLIEiJ_G0016076) #10	Purb (MGP_CAROLIEiJ_G0016075) #11	H2az2 (MGP_CAROLIEiJ_G0016074) #12	Zmiz2 (MGP_CAROLIEiJ_G0016072) #14	Ogdh (MGP_CAROLIEiJ_G0016071) #15	Tmed4 (MGP_CAROLIEiJ_G0016070) #16	Ddx56 (MGP_CAROLIEiJ_G0016069) #17	Npc1l1 (MGP_CAROLIEiJ_G0016068) #18	MGP_CAROLIEiJ_G0016067	Nudcd3 (MGP_CAROLIEiJ_G0016066) #19	Camk2b (MGP_CAROLIEiJ_G0016065) #20	Ykt6 (MGP_CAROLIEiJ_G0016064) #21	Gck (MGP_CAROLIEiJ_G0016063) #22	Myl7 (MGP_CAROLIEiJ_G0016062) #23	Pold2 (MGP_CAROLIEiJ_G0016061) #24	Aebp1 (MGP_CAROLIEiJ_G0016060) #25	Polm (MGP_CAROLIEiJ_G0016059) #26	Pgam2 (MGP_CAROLIEiJ_G0016058) #27	Dbnl (MGP_CAROLIEiJ_G0016057) #28	Urgcp (MGP_CAROLIEiJ_G0016056) #29	Mrps24 (MGP_CAROLIEiJ_G0016055) #30	Ankrd36 (MGP_CAROLIEiJ_G0016054) #31	Ccdc117 (MGP_CAROLIEiJ_G0016053) #32	MGP_CAROLIEiJ_G0016052 #33	Znrf3 (MGP_CAROLIEiJ_G0016051) #34	Kremen1 (MGP_CAROLIEiJ_G0016050) #35	Emid1 (MGP_CAROLIEiJ_G0016049) #36	Rhbdd3 (MGP_CAROLIEiJ_G0016048) #37
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016813 #8	Ccm2 (MGP_PahariEiJ_G0016814) #9	MGP_PahariEiJ_G0016815	Purb (MGP_PahariEiJ_G0016816) #11	H2az2 (MGP_PahariEiJ_G0016817) #12	Ppia (MGP_PahariEiJ_G0016818) ##13	Zmiz2 (MGP_PahariEiJ_G0016819) #14	Ogdh (MGP_PahariEiJ_G0016820) #15	Tmed4 (MGP_PahariEiJ_G0016821) #16	Ddx56 (MGP_PahariEiJ_G0016822) #17	Npc1l1 (MGP_PahariEiJ_G0016823) #18	MGP_PahariEiJ_G0016824	Nudcd3 (MGP_PahariEiJ_G0016825) #19	Camk2b (MGP_PahariEiJ_G0016826) #20	Ykt6 (MGP_PahariEiJ_G0016827) #21	Gck (MGP_PahariEiJ_G0016828) #22	Myl7 (MGP_PahariEiJ_G0016829) #23	Pold2 (MGP_PahariEiJ_G0016830) #24	Aebp1 (MGP_PahariEiJ_G0016831) #25	Polm (MGP_PahariEiJ_G0016832) #26	Pgam2 (MGP_PahariEiJ_G0016833) #27	Dbnl (MGP_PahariEiJ_G0016834) #28	Urgcp (MGP_PahariEiJ_G0016835) #29	Mrps24 (MGP_PahariEiJ_G0016836) #30	Ankrd36 (MGP_PahariEiJ_G0016837) #31	Ccdc117 (MGP_PahariEiJ_G0016838) #32	MGP_PahariEiJ_G0016839 #33	Znrf3 (MGP_PahariEiJ_G0016840) #34	Kremen1 (MGP_PahariEiJ_G0016841) #35	Emid1 (MGP_PahariEiJ_G0016842) #36	Rhbdd3 (MGP_PahariEiJ_G0016843) #37
Rat	MODERN SPECIES	5	Myo1g (ENSRNOG00000059140) #10	LOC100360491 (ENSRNOG00000061438)	ENSRNOG00000062895	Purb (ENSRNOG00000069265) #11	AC106663.1 (ENSRNOG00000055372)	H2az2 (ENSRNOG00000052275) #12	Ppia (ENSRNOG00000027864) ##13	Zmiz2 (ENSRNOG00000025923) #14	Ogdh (ENSRNOG00000005130) #15	Tmed4 (ENSRNOG00000005016) #16	Ddx56 (ENSRNOG00000004670) #17	Npc1l1 (ENSRNOG00000049955) #18	Nudcd3 (ENSRNOG00000056148) #19	Camk2b (ENSRNOG00000052080) #20	Ykt6 (ENSRNOG00000014785) #21	Gck (ENSRNOG00000061527) #22	Myl7 (ENSRNOG00000014409) #23	Pold2 (ENSRNOG00000014098) #24	Aebp1 (ENSRNOG00000013720) #25	Polm (ENSRNOG00000013647) #26	Pgam2 (ENSRNOG00000013532) #27	Dbnl (ENSRNOG00000012378) #28	Urgcp (ENSRNOG00000012184) #29	Mrps24 (ENSRNOG00000011979) #30	ENSRNOG00000069799	AC136588.2 (ENSRNOG00000030988)	Ankrd36 (ENSRNOG00000056767) #31	Ccdc117 (ENSRNOG00000010706) #32	Xbp1 (ENSRNOG00000010298) #33	Znrf3 (ENSRNOG00000067305) #34	Kremen1 (ENSRNOG00000051487) #35