Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.b #22
Euteleostomi	ANCESTRAL SPECIES	267						ENSGT00940000157856	ENSGT00390000005154	ENSGT00940000158670	ENSGT00940000154966	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488
Sarcopterygii	ANCESTRAL SPECIES	212		ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000154856.A.a	ENSGT00940000161605	ENSGT00940000157856	ENSGT00390000005154	ENSGT00940000158670	ENSGT00940000154966	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488
Tetrapoda	ANCESTRAL SPECIES	61	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000011179 #33	ENSGT00940000158973.b #20	ENSGT00940000158444 #19	ENSGT00940000166166	ENSGT00950000182926.b.c #27	ENSGT01100000266316	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613
Amniota	ANCESTRAL SPECIES	100					ENSGT00940000159904 #18	ENSGT00550000074946 #17	ENSGT00940000159012 #16	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000156732 #28	ENSGT00940000160915 #30
Mammalia	ANCESTRAL SPECIES	67	ENSGT00530000064017.b	ENSGT00390000011010.b	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.jb	ENSGT00950000182943.kb.b.b	ENSGT00950000182943.kb.b.a.b.a
Theria	ANCESTRAL SPECIES	13	ENSGT00530000064017.b	ENSGT00390000011010.b	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00390000013353	ENSGT00950000182943.jb	ENSGT00950000182943.kb.b.b.a
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b #13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996
Primates	ANCESTRAL SPECIES	12	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996
Simiiformes	ANCESTRAL SPECIES	12	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Catarrhini	ANCESTRAL SPECIES	6	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Hominoidea	ANCESTRAL SPECIES	6	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946.e #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Hominidae	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946.e #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.k #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946.e #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.k #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946.e #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Human	MODERN SPECIES	19	TBRG4 (ENSG00000136270) #7	NACAD (ENSG00000136274) #8	CCM2 (ENSG00000136280) #9	MYO1G (ENSG00000136286) #10	PURB (ENSG00000146676) #11	H2AZ2 (ENSG00000105968) #12	PPIA (ENSG00000196262) #13	ZMIZ2 (ENSG00000122515) #14	OGDH (ENSG00000105953) #15	TMED4 (ENSG00000158604) #16	DDX56 (ENSG00000136271) #17	NPC1L1 (ENSG00000015520) #18	NUDCD3 (ENSG00000015676) #19	CAMK2B (ENSG00000058404) #20	YKT6 (ENSG00000106636) #21	GCK (ENSG00000106633) #22	MYL7 (ENSG00000106631) #23	POLD2 (ENSG00000106628) #24	AEBP1 (ENSG00000106624) #25	POLM (ENSG00000122678) #26	PGAM2 (ENSG00000164708) #27	DBNL (ENSG00000136279) #28	SPDYE1 (ENSG00000136206) #29	UBE2D4 (ENSG00000078967) #30	URGCP (ENSG00000106608) #31	URGCP-MRPS24 (ENSG00000270617) #32	MRPS24 (ENSG00000062582) #33	BLVRA (ENSG00000106605) #34	COA1 (ENSG00000106603) #35	STK17A (ENSG00000164543) #36	HECW1 (ENSG00000002746) #37
Pan	ANCESTRAL SPECIES	25	ENSGT00940000161501 #8	ENSGT00390000016168.a.k #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a.c #15	ENSGT00940000159012 #16	ENSGT00550000074946.e #17	ENSGT00940000159904 #18	ENSGT00940000153973.c.b	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT01040000241441	ENSGT00940000155142.i.b	ENSGT00940000157852	ENSGT00390000002582	ENSGT00940000157866	ENSGT00940000157116	ENSGT00940000155925	ENSGT00550000074878.`b.b	ENSGT00390000014722
Chimpanzee	MODERN SPECIES	20	NACAD (ENSPTRG00000019158) #8	CCM2 (ENSPTRG00000019156) #9	MYO1G (ENSPTRG00000019155) #10	PURB (ENSPTRG00000023962) #11	ENSPTRG00000019153 #12	PPIA (ENSPTRG00000046562) #13	ZMIZ2 (ENSPTRG00000019150) #14	OGDH (ENSPTRG00000019149) #15	TMED4 (ENSPTRG00000019148) #16	DDX56 (ENSPTRG00000019147) #17	NPC1L1 (ENSPTRG00000019146) #18	ENSPTRG00000052427	NUDCD3 (ENSPTRG00000019144) #19	CAMK2B (ENSPTRG00000051317) #20	YKT6 (ENSPTRG00000019141) #21	GCK (ENSPTRG00000019140) #22	MYL7 (ENSPTRG00000019139) #23	POLD2 (ENSPTRG00000019138) #24	AEBP1 (ENSPTRG00000019137) #25	POLM (ENSPTRG00000048404) #26	ENSPTRG00000043134 #27	DBNL (ENSPTRG00000019134) #28	POLD2 (ENSPTRG00000046411) #24	ENSPTRG00000052352 #25	POLM (ENSPTRG00000019136) #26	ENSPTRG00000051032 #27	ENSPTRG00000047759 #28	ENSPTRG00000050290	ENSPTRG00000028448 ##29	ENSPTRG00000039836	YAE1 (ENSPTRG00000019106)
Bonobo	MODERN SPECIES	20	ENSPPAG00000029695 #8	CCM2 (ENSPPAG00000033771) #9	MYO1G (ENSPPAG00000040898) #10	PURB (ENSPPAG00000001263) #11	H2AZ2 (ENSPPAG00000037168) #12	PPIA (ENSPPAG00000040793) #13	ZMIZ2 (ENSPPAG00000036211) #14	OGDH (ENSPPAG00000040167) #15	TMED4 (ENSPPAG00000034880) #16	DDX56 (ENSPPAG00000029147) #17	NPC1L1 (ENSPPAG00000029235) #18	ENSPPAG00000034668	NUDCD3 (ENSPPAG00000024525) #19	CAMK2B (ENSPPAG00000033180) #20	YKT6 (ENSPPAG00000019726) #21	GCK (ENSPPAG00000030131) #22	MYL7 (ENSPPAG00000038855) #23	POLD2 (ENSPPAG00000029927) #24	AEBP1 (ENSPPAG00000004827) #25	POLM (ENSPPAG00000037663) #26	PGAM2 (ENSPPAG00000033065) #27	DBNL (ENSPPAG00000031811) #28	ENSPPAG00000036366	RALA (ENSPPAG00000003692)	CDK13 (ENSPPAG00000041831)	MPLKIP (ENSPPAG00000037056)	SUGCT (ENSPPAG00000042639)	INHBA (ENSPPAG00000036866)	GLI3 (ENSPPAG00000043020)	ENSPPAG00000022173	ENSPPAG00000036468
Gorilla	MODERN SPECIES	20	CCM2 (ENSGGOG00000000829) #9	MYO1G (ENSGGOG00000010891) #10	PURB (ENSGGOG00000022580) #11	H2AFV (ENSGGOG00000039239) #12	PPIA (ENSGGOG00000026298) #13	ZMIZ2 (ENSGGOG00000003051) #14	OGDH (ENSGGOG00000010729) #15	TMED4 (ENSGGOG00000012046) #16	DDX56 (ENSGGOG00000012031) #17	ENSGGOG00000009084	NPC1L1 (ENSGGOG00000027580) #18	ENSGGOG00000025093	NUDCD3 (ENSGGOG00000001301) #19	CAMK2B (ENSGGOG00000014826) #20	YKT6 (ENSGGOG00000027036) #21	GCK (ENSGGOG00000001501) #22	MYL7 (ENSGGOG00000004911) #23	POLD2 (ENSGGOG00000004424) #24	AEBP1 (ENSGGOG00000004418) #25	ENSGGOG00000004529 #26	PGAM2 (ENSGGOG00000004527) #27	DBNL (ENSGGOG00000004521) #28	ENSGGOG00000022687	ENSGGOG00000043186	ENSGGOG00000037960	UBE2D4 (ENSGGOG00000042519) #30	URGCP (ENSGGOG00000043726) #31	MRPS24 (ENSGGOG00000005692) #33	BLVRA (ENSGGOG00000001735) #34	COA1 (ENSGGOG00000034928) #35	ENSGGOG00000007657 #36
Orangutan	MODERN SPECIES	20	TBRG4 (ENSPPYG00000037080) #7	ENSPPYG00000040018 #8	CCM2 (ENSPPYG00000017581) #9	MYO1G (ENSPPYG00000017582) #10	PURB (ENSPPYG00000017584) #11	H2AZ2 (ENSPPYG00000017585) #12	PPIA (ENSPPYG00000017586) #13	ZMIZ2 (ENSPPYG00000017588) #14	OGDH (ENSPPYG00000017589) #15	TMED4 (ENSPPYG00000017590) #16	DDX56 (ENSPPYG00000017591) #17	NPC1L1 (ENSPPYG00000017592) #18	NUDCD3 (ENSPPYG00000017593) #19	CAMK2B (ENSPPYG00000017594) #20	YKT6 (ENSPPYG00000017595) #21	GCK (ENSPPYG00000017596) #22	MYL7 (ENSPPYG00000033846) #23	POLD2 (ENSPPYG00000017597) #24	AEBP1 (ENSPPYG00000030504) #25	ENSPPYG00000017598 #26	PGAM2 (ENSPPYG00000017599) #27	DBNL (ENSPPYG00000017600) #28	ENSPPYG00000038796 ##30	URGCP (ENSPPYG00000017603) #31	MRPS24 (ENSPPYG00000017604) #33	BLVRA (ENSPPYG00000017605) #34	COA1 (ENSPPYG00000017606) #35	STK17A (ENSPPYG00000017607) #36	HECW1 (ENSPPYG00000017608) #37	MRPL32 (ENSPPYG00000017611)	PSMA2 (ENSPPYG00000030380)
Gibbon	MODERN SPECIES	7	TBRG4 (ENSNLEG00000004152) #7	ENSNLEG00000027018 #8	CCM2 (ENSNLEG00000004090) #9	MYO1G (ENSNLEG00000004060) #10	ENSNLEG00000035871	H2AZ2 (ENSNLEG00000004039) #12	PPIA (ENSNLEG00000004024) #13	ZMIZ2 (ENSNLEG00000028725) #14	OGDH (ENSNLEG00000003931) #15	ENSNLEG00000029010 #16	DDX56 (ENSNLEG00000003816) #17	NPC1L1 (ENSNLEG00000003753) #18	NUDCD3 (ENSNLEG00000003732) #19	CAMK2B (ENSNLEG00000003715) #20	YKT6 (ENSNLEG00000003689) #21	GCK (ENSNLEG00000028208) #22	MYL7 (ENSNLEG00000003674) #23	POLD2 (ENSNLEG00000003570) #24	ENSNLEG00000003564 #25	ENSNLEG00000003555 #26	PGAM2 (ENSNLEG00000003550) #27	DBNL (ENSNLEG00000003395) #28	UBE2D4 (ENSNLEG00000003364) #30	URGCP (ENSNLEG00000003351) #31	ENSNLEG00000026683	MRPS24 (ENSNLEG00000033007) #33	BLVRA (ENSNLEG00000003333) #34	COA1 (ENSNLEG00000003316) #35	STK17A (ENSNLEG00000003304) #36	ENSNLEG00000035608	HECW1 (ENSNLEG00000003209) #37
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Rhinopithecus	ANCESTRAL SPECIES	126	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Black snub-nosed monkey	MODERN SPECIES	1199															YKT6 (ENSRBIG00000037437) #21	GCK (ENSRBIG00000034645) #22	MYL7 (ENSRBIG00000041967) #23	POLD2 (ENSRBIG00000036987) #24	AEBP1 (ENSRBIG00000037140) #25	POLM (ENSRBIG00000042241) #26	PGAM2 (ENSRBIG00000034848) #27	DBNL (ENSRBIG00000034629) #28	ENSRBIG00000009757	ENSRBIG00000040351 #30	URGCP (ENSRBIG00000032716) #31	BLVRA (ENSRBIG00000029337) #34	COA1 (ENSRBIG00000023583) #35	STK17A (ENSRBIG00000033570) #36	HECW1 (ENSRBIG00000042909) #37
Golden snub-nosed monkey	MODERN SPECIES	1797	TBRG4 (ENSRROG00000004852) #7	NACAD (ENSRROG00000029496) #8	CCM2 (ENSRROG00000025689) #9	MYO1G (ENSRROG00000014956) #10	PURB (ENSRROG00000000118) #11	H2AZ2 (ENSRROG00000036393) #12	PPIA (ENSRROG00000015742) #13	ZMIZ2 (ENSRROG00000033224) #14	OGDH (ENSRROG00000031910) #15	TMED4 (ENSRROG00000041322) #16	DDX56 (ENSRROG00000044428) #17	NPC1L1 (ENSRROG00000040884) #18	NUDCD3 (ENSRROG00000014276) #19	CAMK2B (ENSRROG00000040951) #20	YKT6 (ENSRROG00000044282) #21	GCK (ENSRROG00000035669) #22	POLD2 (ENSRROG00000044307) #24	AEBP1 (ENSRROG00000041649) #25	POLM (ENSRROG00000032525) #26	PGAM2 (ENSRROG00000039506) #27	DBNL (ENSRROG00000040794) #28	ENSRROG00000012365	ENSRROG00000033214 #30	URGCP (ENSRROG00000022418) #31	MRPS24 (ENSRROG00000043231) #33
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Vervet Monkey	MODERN SPECIES	13	TBRG4 (ENSCSAG00000015722) #7	NACAD (ENSCSAG00000015717) #8	CCM2 (ENSCSAG00000015710) #9	MYO1G (ENSCSAG00000015705) #10	PURB (ENSCSAG00000019598) #11	H2AZ2 (ENSCSAG00000015697) #12	PPIA (ENSCSAG00000015690) #13	ZMIZ2 (ENSCSAG00000015673) #14	OGDH (ENSCSAG00000015662) #15	TMED4 (ENSCSAG00000015650) #16	DDX56 (ENSCSAG00000015636) #17	NPC1L1 (ENSCSAG00000015627) #18	NUDCD3 (ENSCSAG00000015602) #19	CAMK2B (ENSCSAG00000015599) #20	YKT6 (ENSCSAG00000015593) #21	GCK (ENSCSAG00000015587) #22	MYL7 (ENSCSAG00000015580) #23	POLD2 (ENSCSAG00000015565) #24	AEBP1 (ENSCSAG00000015516) #25	POLM (ENSCSAG00000015486) #26	PGAM2 (ENSCSAG00000015481) #27	DBNL (ENSCSAG00000015475) #28	UBE2D4 (ENSCSAG00000015467) ##30	URGCP (ENSCSAG00000015454) #31	MRPS24 (ENSCSAG00000015447) #33	BLVRA (ENSCSAG00000015441) #34	COA1 (ENSCSAG00000015432) #35	STK17A (ENSCSAG00000015428) #36	HECW1 (ENSCSAG00000015421) #37	ENSCSAG00000015403	PSMA2 (ENSCSAG00000015394)
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Macaca	ANCESTRAL SPECIES	3	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00910000147095	ENSGT00940000160915.f #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452
Pig-tailed macaque	MODERN SPECIES	212	TBRG4 (ENSMNEG00000042855) #7	NACAD (ENSMNEG00000039751) #8	CCM2 (ENSMNEG00000045364) #9	MYO1G (ENSMNEG00000036674) #10	PURB (ENSMNEG00000011480) #11	H2AZ2 (ENSMNEG00000034878) #12	ENSMNEG00000031080	ZMIZ2 (ENSMNEG00000029115) #14	OGDH (ENSMNEG00000037375) #15	TMED4 (ENSMNEG00000043518) #16	DDX56 (ENSMNEG00000028492) #17	NPC1L1 (ENSMNEG00000042016) #18	NUDCD3 (ENSMNEG00000032656) #19	CAMK2B (ENSMNEG00000038861) #20	YKT6 (ENSMNEG00000036461) #21	GCK (ENSMNEG00000036780) #22	MYL7 (ENSMNEG00000029278) #23	POLD2 (ENSMNEG00000032635) #24	ENSMNEG00000042467	POLM (ENSMNEG00000032354) #26	PGAM2 (ENSMNEG00000034644) #27	DBNL (ENSMNEG00000043760) #28	ENSMNEG00000038254	UBE2D4 (ENSMNEG00000038205) #30	URGCP (ENSMNEG00000005790) #31	MRPS24 (ENSMNEG00000044096) #33	BLVRA (ENSMNEG00000036114) #34	COA1 (ENSMNEG00000035017) #35	STK17A (ENSMNEG00000040471) #36	ENSMNEG00000037947	ENSMNEG00000033977
Macaca_a	ANCESTRAL SPECIES	7	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00940000163323.c.a	ENSGT00390000014996.y
Crab-eating macaque	MODERN SPECIES	13	TBRG4 (ENSMFAG00000032141) #7	NACAD (ENSMFAG00000034360) #8	CCM2 (ENSMFAG00000001936) #9	MYO1G (ENSMFAG00000042307) #10	PURB (ENSMFAG00000002908) #11	H2AZ2 (ENSMFAG00000040562) #12	ENSMFAG00000058017 ##13	ZMIZ2 (ENSMFAG00000003941) #14	OGDH (ENSMFAG00000042097) #15	TMED4 (ENSMFAG00000035764) #16	DDX56 (ENSMFAG00000041001) #17	NPC1L1 (ENSMFAG00000043097) #18	NUDCD3 (ENSMFAG00000037323) #19	ENSMFAG00000003145 #20	YKT6 (ENSMFAG00000036001) #21	GCK (ENSMFAG00000043774) #22	MYL7 (ENSMFAG00000038137) #23	POLD2 (ENSMFAG00000042401) #24	AEBP1 (ENSMFAG00000046276) #25	POLM (ENSMFAG00000043995) #26	PGAM2 (ENSMFAG00000048956) #27	DBNL (ENSMFAG00000032367) #28	ENSMFAG00000000260 ##30	URGCP (ENSMFAG00000034049) #31	MRPS24 (ENSMFAG00000003446) #33	COA1 (ENSMFAG00000039026) #35	BLVRA (ENSMFAG00000036162) #34	STK17A (ENSMFAG00000043073) #36	ENSMFAG00000055954	HECW1 (ENSMFAG00000003543) #37	ENSMFAG00000056799
Rhesus	MODERN SPECIES	13	NACAD (ENSMMUG00000042817) #8	CCM2 (ENSMMUG00000001799) #9	MYO1G (ENSMMUG00000008914) #10	PURB (ENSMMUG00000047932) #11	H2AZ2 (ENSMMUG00000000962) #12	PPIA (ENSMMUG00000016638) #13	ZMIZ2 (ENSMMUG00000002652) #14	ENSMMUG00000064180	OGDH (ENSMMUG00000002651) #15	TMED4 (ENSMMUG00000002650) #16	DDX56 (ENSMMUG00000002645) #17	NPC1L1 (ENSMMUG00000000782) #18	ENSMMUG00000063623	CAMK2B (ENSMMUG00000002433) #20	YKT6 (ENSMMUG00000002430) #21	GCK (ENSMMUG00000002427) #22	DBNL (ENSMMUG00000002411) #28	MYL7 (ENSMMUG00000002426) #23	POLD2 (ENSMMUG00000002423) #24	AEBP1 (ENSMMUG00000002422)	POLM (ENSMMUG00000002421) #26	PGAM2 (ENSMMUG00000064860) #27	URGCP (ENSMMUG00000002408) #31	COA1 (ENSMMUG00000019023) #35	BLVRA (ENSMMUG00000017382) #34	STK17A (ENSMMUG00000019022) #36	HECW1 (ENSMMUG00000019015) #37	ENSMMUG00000057956	ENSMMUG00000049363	MRPL32 (ENSMMUG00000060273)	PSMA2 (ENSMMUG00000022451)
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996.y
Olive baboon	MODERN SPECIES	14	TBRG4 (ENSPANG00000004288) #7	NACAD (ENSPANG00000000405) #8	CCM2 (ENSPANG00000000406) #9	MYO1G (ENSPANG00000000682) #10	PURB (ENSPANG00000045024) #11	ENSPANG00000040992 #12	ENSPANG00000029569 #13	ZMIZ2 (ENSPANG00000007148) #14	OGDH (ENSPANG00000026232) #15	TMED4 (ENSPANG00000041568) #16	DDX56 (ENSPANG00000002446) #17	NPC1L1 (ENSPANG00000014131) #18	NUDCD3 (ENSPANG00000033313) #19	CAMK2B (ENSPANG00000006925) #20	ENSPANG00000051222 ##21	GCK (ENSPANG00000021695) #22	MYL7 (ENSPANG00000043698) #23	POLD2 (ENSPANG00000007078) #24	ENSPANG00000002445	POLM (ENSPANG00000023968) #26	PGAM2 (ENSPANG00000014548) #27	DBNL (ENSPANG00000019050) #28	URGCP (ENSPANG00000023114) #31	BLVRA (ENSPANG00000007077) #34	COA1 (ENSPANG00000041899) #35	STK17A (ENSPANG00000022843) #36	HECW1 (ENSPANG00000022845) #37	ENSPANG00000043395	MRPL32 (ENSPANG00000023966)	PSMA2 (ENSPANG00000007348)	C7orf25 (ENSPANG00000040755)
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g.e.b.b.a.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.e.a ##30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996.y	ENSGT00550000074870.b.nc
Drill	MODERN SPECIES	869	RAMP3 (ENSMLEG00000039399)	TBRG4 (ENSMLEG00000035475) #7	NACAD (ENSMLEG00000023132) #8	CCM2 (ENSMLEG00000042310) #9	MYO1G (ENSMLEG00000043934) #10	H2AZ2 (ENSMLEG00000035764) #12	ENSMLEG00000034936 ##13	ZMIZ2 (ENSMLEG00000029695) #14	OGDH (ENSMLEG00000042919) #15	TMED4 (ENSMLEG00000042939) #16	DDX56 (ENSMLEG00000043591) #17	NPC1L1 (ENSMLEG00000029100) #18	NUDCD3 (ENSMLEG00000008476) #19	CAMK2B (ENSMLEG00000027867) #20	YKT6 (ENSMLEG00000033734) #21	GCK (ENSMLEG00000039475) #22	POLD2 (ENSMLEG00000040033) #24	AEBP1 (ENSMLEG00000031639) #25	POLM (ENSMLEG00000044393) #26	PGAM2 (ENSMLEG00000035459) #27	DBNL (ENSMLEG00000032797) #28	ENSMLEG00000039994 ##30	URGCP (ENSMLEG00000005986) #31	MRPS24 (ENSMLEG00000039159) #33	BLVRA (ENSMLEG00000040925) #34	COA1 (ENSMLEG00000034935) #35	STK17A (ENSMLEG00000030915) #36	ENSMLEG00000000878	HECW1 (ENSMLEG00000029911) #37
Sooty mangabey	MODERN SPECIES	252	TBRG4 (ENSCATG00000029779) #7	NACAD (ENSCATG00000037372) #8	CCM2 (ENSCATG00000009811) #9	MYO1G (ENSCATG00000031134) #10	PURB (ENSCATG00000021124) #11	H2AZ2 (ENSCATG00000001553) #12	ENSCATG00000035746 ##13	ZMIZ2 (ENSCATG00000036431) #14	OGDH (ENSCATG00000043101) #15	TMED4 (ENSCATG00000036933) #16	DDX56 (ENSCATG00000039389) #17	NPC1L1 (ENSCATG00000034769) #18	NUDCD3 (ENSCATG00000033255) #19	CAMK2B (ENSCATG00000033919) #20	YKT6 (ENSCATG00000037272) #21	GCK (ENSCATG00000038208) #22	POLD2 (ENSCATG00000040619) #24	ENSCATG00000045184	POLM (ENSCATG00000019986) #26	PGAM2 (ENSCATG00000024470) #27	DBNL (ENSCATG00000029728) #28	ENSCATG00000021056	UBE2D4 (ENSCATG00000030978) #30	ENSCATG00000031150	URGCP (ENSCATG00000031265) #31	MRPS24 (ENSCATG00000033132) #33	BLVRA (ENSCATG00000043396) #34	COA1 (ENSCATG00000044042) #35	STK17A (ENSCATG00000033831) #36	ENSCATG00000020670	HECW1 (ENSCATG00000043550) #37
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT01100000264474	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a.h.c.b.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179.m #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT01100000264474	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a.h.c.b.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179.m #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT01100000264474	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a.h.c.b.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.k #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00910000147095	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179.m #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37
Capuchin	MODERN SPECIES	546													NUDCD3 (ENSCCAG00000031094) #19	CAMK2B (ENSCCAG00000029763) #20	YKT6 (ENSCCAG00000026854) #21	GCK (ENSCCAG00000027953) #22	MYL7 (ENSCCAG00000034593) #23	POLD2 (ENSCCAG00000023591) #24	AEBP1 (ENSCCAG00000027385) #25	POLM (ENSCCAG00000034931) #26	PGAM2 (ENSCCAG00000020406) #27	DBNL (ENSCCAG00000024783) #28	ENSCCAG00000029289	UBE2D4 (ENSCCAG00000024405) #30	URGCP (ENSCCAG00000033948) #31	MRPS24 (ENSCCAG00000023789) #33	BLVRA (ENSCCAG00000028614) #34	COA1 (ENSCCAG00000030094) #35	STK17A (ENSCCAG00000036249) #36	ENSCCAG00000003717	HECW1 (ENSCCAG00000036579) #37
Bolivian squirrel monkey	MODERN SPECIES	82	NACAD (ENSSBOG00000032063) #8	CCM2 (ENSSBOG00000030982) #9	ENSSBOG00000026934	MYO1G (ENSSBOG00000034087) #10	H2AZ2 (ENSSBOG00000000872) #12	ENSSBOG00000035081 ##13	ZMIZ2 (ENSSBOG00000032470) #14	OGDH (ENSSBOG00000032539) #15	TMED4 (ENSSBOG00000032356) #16	DDX56 (ENSSBOG00000034339) #17	ENSSBOG00000027505	NPC1L1 (ENSSBOG00000031878) #18	NUDCD3 (ENSSBOG00000030729) #19	CAMK2B (ENSSBOG00000031179) #20	YKT6 (ENSSBOG00000012145) #21	GCK (ENSSBOG00000000143) #22	MYL7 (ENSSBOG00000021992) #23	POLD2 (ENSSBOG00000033855) #24	AEBP1 (ENSSBOG00000023002) #25	POLM (ENSSBOG00000026333) #26	PGAM2 (ENSSBOG00000031111) #27	DBNL (ENSSBOG00000027972) #28	UBE2D4 (ENSSBOG00000034793) #30	URGCP (ENSSBOG00000020021) #31	ENSSBOG00000028274 #33	BLVRA (ENSSBOG00000030897) #34	COA1 (ENSSBOG00000023098) #35	STK17A (ENSSBOG00000022665) #36	HECW1 (ENSSBOG00000022224) #37	ENSSBOG00000031237	ENSSBOG00000023091
Marmoset	MODERN SPECIES	20	ENSCJAG00000082490	TBRG4 (ENSCJAG00000011804) #7	NACAD (ENSCJAG00000081169) #8	CCM2 (ENSCJAG00000011851) #9	MYO1G (ENSCJAG00000011889) #10	H2AZ2 (ENSCJAG00000011953) #12	ENSCJAG00000011969 ##13	ZMIZ2 (ENSCJAG00000011984) #14	OGDH (ENSCJAG00000012021) #15	TMED4 (ENSCJAG00000012217) #16	DDX56 (ENSCJAG00000012233) #17	NPC1L1 (ENSCJAG00000012318) #18	NUDCD3 (ENSCJAG00000008208) #19	CAMK2B (ENSCJAG00000008079) #20	ENSCJAG00000040988 ##21	GCK (ENSCJAG00000008025) #22	MYL7 (ENSCJAG00000008015) #23	POLD2 (ENSCJAG00000007954) #24	AEBP1 (ENSCJAG00000007936) #25	ENSCJAG00000007934 #26	PGAM2 (ENSCJAG00000007923) #27	ENSCJAG00000007899 #30	URGCP (ENSCJAG00000007849) #31	ENSCJAG00000007842 #33	BLVRA (ENSCJAG00000007829) #34	COA1 (ENSCJAG00000007826) #35	STK17A (ENSCJAG00000007799) #36	ENSCJAG00000078337	HECW1 (ENSCJAG00000007768) #37	ENSCJAG00000082260	ENSCJAG00000062733
Mas night monkey	MODERN SPECIES	867													NUDCD3 (ENSANAG00000029361) #19	CAMK2B (ENSANAG00000030017) #20	YKT6 (ENSANAG00000015863) #21	GCK (ENSANAG00000028532) #22	MYL7 (ENSANAG00000023612) #23	POLD2 (ENSANAG00000027652) #24	AEBP1 (ENSANAG00000024351) #25	POLM (ENSANAG00000025140) #26	PGAM2 (ENSANAG00000020857) #27	DBNL (ENSANAG00000027306) #28	UBE2D4 (ENSANAG00000029203) #30	URGCP (ENSANAG00000014118) #31	ENSANAG00000027880 #33
Tarsier	MODERN SPECIES	4231													NUDCD3 (ENSTSYG00000008598) #19	CAMK2B (ENSTSYG00000012581) #20	YKT6 (ENSTSYG00000005835) #21	GCK (ENSTSYG00000007022) #22	MYL7 (ENSTSYG00000011012) #23	POLD2 (ENSTSYG00000011007) #24	AEBP1 (ENSTSYG00000031939) #25	POLM (ENSTSYG00000010327) #26	PGAM2 (ENSTSYG00000006825) #27	DBNL (ENSTSYG00000009066) #28	UBE2D4 (ENSTSYG00000027924) #30	URGCP (ENSTSYG00000026474) #31	BLVRA (ENSTSYG00000030197) #34
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.n #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294.a #37	ENSGT00900000143452	ENSGT00940000158294.b #37
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.n #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294.a #37	ENSGT00900000143452	ENSGT00940000158294.b #37
Mouse lemur	MODERN SPECIES	2	NACAD (ENSMICG00000008846) #8	CCM2 (ENSMICG00000008829) #9	MYO1G (ENSMICG00000045858) #10	ENSMICG00000026531	PURB (ENSMICG00000028242) #11	H2AZ2 (ENSMICG00000008792) #12	ENSMICG00000027555 #13	ZMIZ2 (ENSMICG00000003918) #14	OGDH (ENSMICG00000015987) #15	TMED4 (ENSMICG00000005557) #16	DDX56 (ENSMICG00000005550) #17	NPC1L1 (ENSMICG00000005536) #18	NUDCD3 (ENSMICG00000003284) #19	CAMK2B (ENSMICG00000004015) #20	YKT6 (ENSMICG00000004010) #21	GCK (ENSMICG00000013503) #22	MYL7 (ENSMICG00000004005) #23	ENSMICG00000013459 #24	AEBP1 (ENSMICG00000013400) #25	POLM (ENSMICG00000013358) #26	PGAM2 (ENSMICG00000013345) #27	DBNL (ENSMICG00000013311) #28	ENSMICG00000013289	URGCP (ENSMICG00000030783) #31	MRPS24 (ENSMICG00000043303) #33	BLVRA (ENSMICG00000007284) #34	COA1 (ENSMICG00000013834) #35	STK17A (ENSMICG00000047496) #36	ENSMICG00000047051	HECW1 (ENSMICG00000001053) #37	ENSMICG00000045915
Lemuriformes_a	ANCESTRAL SPECIES	94	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.n #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a.h ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294.b #37	ENSGT00390000014996	ENSGT00550000074870.b
Greater bamboo lemur	MODERN SPECIES	241	ENSPSMG00000021743 #8	CCM2 (ENSPSMG00000021677) #9	MYO1G (ENSPSMG00000021537) #10	ENSPSMG00000021520	PURB (ENSPSMG00000021514) #11	H2AZ2 (ENSPSMG00000021505) #12	ENSPSMG00000021440 ##13	ZMIZ2 (ENSPSMG00000021326) #14	OGDH (ENSPSMG00000020942) #15	TMED4 (ENSPSMG00000020530) #16	DDX56 (ENSPSMG00000020497) #17	NPC1L1 (ENSPSMG00000020447) #18	NUDCD3 (ENSPSMG00000020362) #19	CAMK2B (ENSPSMG00000018309) #20	YKT6 (ENSPSMG00000016728) #21	GCK (ENSPSMG00000016706) #22	MYL7 (ENSPSMG00000016635) #23	POLD2 (ENSPSMG00000016620) #24	AEBP1 (ENSPSMG00000016602) #25	POLM (ENSPSMG00000016557) #26	ENSPSMG00000016529	PGAM2 (ENSPSMG00000016519) #27	DBNL (ENSPSMG00000016466) #28	UBE2D4 (ENSPSMG00000016250) #30	URGCP (ENSPSMG00000016242) #31	ENSPSMG00000016188 #33	BLVRA (ENSPSMG00000016166) #34	COA1 (ENSPSMG00000016121) #35	ENSPSMG00000016103	STK17A (ENSPSMG00000016095) #36	ENSPSMG00000016059 #37
Coquerels sifaka	MODERN SPECIES	361	TBRG4 (ENSPCOG00000026104) #7	NACAD (ENSPCOG00000000217) #8	CCM2 (ENSPCOG00000017013) #9	MYO1G (ENSPCOG00000004229) #10	PURB (ENSPCOG00000003416) #11	H2AZ2 (ENSPCOG00000018252) #12	ENSPCOG00000028123 ##13	ZMIZ2 (ENSPCOG00000025600) #14	OGDH (ENSPCOG00000025741) #15	ENSPCOG00000017663 #16	DDX56 (ENSPCOG00000024864) #17	NPC1L1 (ENSPCOG00000027497) #18	NUDCD3 (ENSPCOG00000013041) #19	CAMK2B (ENSPCOG00000014854) #20	YKT6 (ENSPCOG00000016771) #21	GCK (ENSPCOG00000021845) #22	MYL7 (ENSPCOG00000027788) #23	POLD2 (ENSPCOG00000023991) #24	AEBP1 (ENSPCOG00000014510) #25	POLM (ENSPCOG00000013792) #26	PGAM2 (ENSPCOG00000015813) #27	DBNL (ENSPCOG00000025819) #28	ENSPCOG00000028067	URGCP (ENSPCOG00000026370) #31	MRPS24 (ENSPCOG00000015625) #33	BLVRA (ENSPCOG00000028055) #34	COA1 (ENSPCOG00000013220) #35	STK17A (ENSPCOG00000023716) #36	HECW1 (ENSPCOG00000012498) #37	MRPL32 (ENSPCOG00000020168)	PSMA2 (ENSPCOG00000025748)
Bushbaby	MODERN SPECIES	234	NACAD (ENSOGAG00000032908) #8	CCM2 (ENSOGAG00000007297) #9	MYO1G (ENSOGAG00000000326) #10	PURB (ENSOGAG00000026115) #11	H2AZ2 (ENSOGAG00000025145) #12	ENSOGAG00000027997 #13	ZMIZ2 (ENSOGAG00000001208) #14	OGDH (ENSOGAG00000002776) #15	TMED4 (ENSOGAG00000009985) #16	DDX56 (ENSOGAG00000009981) #17	NPC1L1 (ENSOGAG00000030638) #18	ENSOGAG00000031987	NUDCD3 (ENSOGAG00000009560) #19	CAMK2B (ENSOGAG00000025215) #20	YKT6 (ENSOGAG00000006454) #21	GCK (ENSOGAG00000013533) #22	MYL7 (ENSOGAG00000013527) #23	POLD2 (ENSOGAG00000006720) #24	AEBP1 (ENSOGAG00000007419) #25	POLM (ENSOGAG00000006715) #26	PGAM2 (ENSOGAG00000006713) #27	DBNL (ENSOGAG00000006706) #28	UBE2D4 (ENSOGAG00000004018) #30	URGCP (ENSOGAG00000001595) #31	MRPS24 (ENSOGAG00000001593) #33	BLVRA (ENSOGAG00000001591) #34	COA1 (ENSOGAG00000006944) #35	STK17A (ENSOGAG00000033031) #36	HECW1 (ENSOGAG00000013436) #37	MRPL32 (ENSOGAG00000016806)	PSMA2 (ENSOGAG00000016805)
Euarchontoglires_A	ANCESTRAL SPECIES	23	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Glires	ANCESTRAL SPECIES	24	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.o #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000161752	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d	ENSGT00390000003115	ENSGT00940000154631
Naked mole-rat female	MODERN SPECIES		TBRG4 (ENSHGLG00000013941) #7	ENSHGLG00000035554 #8	CCM2 (ENSHGLG00000017450) #9	MYO1G (ENSHGLG00000007954) #10	H2AFV (ENSHGLG00000037585) #12	ENSHGLG00000036983	PPIA (ENSHGLG00000040573) ##13	ZMIZ2 (ENSHGLG00000005097) #14	OGDH (ENSHGLG00000008706) #15	TMED4 (ENSHGLG00000019465) #16	DDX56 (ENSHGLG00000017271) #17	NPC1L1 (ENSHGLG00000018856) #18	NUDCD3 (ENSHGLG00000015378) #19	CAMK2B (ENSHGLG00000015797) #20	YKT6 (ENSHGLG00000019116) #21	GCK (ENSHGLG00000019150) #22	MYL7 (ENSHGLG00000018902) #23	POLD2 (ENSHGLG00000014784) #24	POLM (ENSHGLG00000014178) #26	PGAM2 (ENSHGLG00000012441) #27	DBNL (ENSHGLG00000013008) #28	ENSHGLG00000043334 #30	ENSHGLG00000005469 #31	ENSHGLG00000041438 #33	ENSHGLG00000038583	ENSHGLG00000036018	ENSHGLG00000041022	ENSHGLG00000033643	ENSHGLG00000048189	ENSHGLG00000016304	ENSHGLG00000009551
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.o #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000161752	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d	ENSGT00390000003115	ENSGT00940000154631
Guinea pig	MODERN SPECIES	66	RAMP3 (ENSCPOG00000013360)	TBRG4 (ENSCPOG00000012294) #7	ENSCPOG00000020626 #8	CCM2 (ENSCPOG00000009887) #9	MYO1G (ENSCPOG00000027389) #10	PURB (ENSCPOG00000033652) #11	H2AZ2 (ENSCPOG00000036358) #12	ENSCPOG00000002632 ##13	ZMIZ2 (ENSCPOG00000002214) #14	OGDH (ENSCPOG00000003361) #15	TMED4 (ENSCPOG00000030032) #16	DDX56 (ENSCPOG00000003359) #17	NUDCD3 (ENSCPOG00000032095) #19	CAMK2B (ENSCPOG00000019961) #20	YKT6 (ENSCPOG00000039668) #21	GCK (ENSCPOG00000005392) #22	POLD2 (ENSCPOG00000020753) #24	AEBP1 (ENSCPOG00000006383) #25	POLM (ENSCPOG00000014785) #26	PGAM2 (ENSCPOG00000006665) #27	DBNL (ENSCPOG00000006660) #28	UBE2D4 (ENSCPOG00000038086) #30	URGCP (ENSCPOG00000025608) #31	MRPS24 (ENSCPOG00000036749) #33	SEPTIN14 (ENSCPOG00000009996)	ENSCPOG00000038154	NIPSNAP2 (ENSCPOG00000004556)	PSPH (ENSCPOG00000039209)	CCT6A (ENSCPOG00000006992)	SUMF2 (ENSCPOG00000006993)	PHKG1 (ENSCPOG00000000387)
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a.o #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000161752	ENSGT00950000182890.A.a.b.b.b	ENSGT00530000064130	ENSGT00950000183018.a.d	ENSGT00390000003115	ENSGT00940000154631
Degu	MODERN SPECIES	76	TBRG4 (ENSODEG00000013538) #7	ENSODEG00000014246 #8	ENSODEG00000013258 #9	MYO1G (ENSODEG00000014298) #10	PURB (ENSODEG00000014570) #11	ENSODEG00000013307 #12	ENSODEG00000014266 ##13	ZMIZ2 (ENSODEG00000013173) #14	OGDH (ENSODEG00000013491) #15	TMED4 (ENSODEG00000013873) #16	DDX56 (ENSODEG00000014807) #17	NPC1L1 (ENSODEG00000014236) #18	NUDCD3 (ENSODEG00000014835) #19	CAMK2B (ENSODEG00000014782) #20	ENSODEG00000014119 #21	GCK (ENSODEG00000014198) #22	MYL7 (ENSODEG00000014034) #23	POLD2 (ENSODEG00000014406) #24	AEBP1 (ENSODEG00000015327) #25	POLM (ENSODEG00000015087) #26	PGAM2 (ENSODEG00000014343) #27	DBNL (ENSODEG00000014896) #28	URGCP (ENSODEG00000015352) #31	MRPS24 (ENSODEG00000016539) #33	ENSODEG00000020219	SEPTIN14 (ENSODEG00000014211)	ENSODEG00000015145	NIPSNAP2 (ENSODEG00000014015)	PSPH (ENSODEG00000014742)	ENSODEG00000014693	PHKG1 (ENSODEG00000014159)
Long-tailed chinchilla	MODERN SPECIES	163	RAMP3 (ENSCLAG00000005679)	TBRG4 (ENSCLAG00000004243) #7	NACAD (ENSCLAG00000005578) #8	CCM2 (ENSCLAG00000006017) #9	MYO1G (ENSCLAG00000004566) #10	ENSCLAG00000007031 #12	ENSCLAG00000006301 ##13	ZMIZ2 (ENSCLAG00000006368) #14	OGDH (ENSCLAG00000016487) #15	TMED4 (ENSCLAG00000011255) #16	DDX56 (ENSCLAG00000007666) #17	NPC1L1 (ENSCLAG00000008529) #18	NUDCD3 (ENSCLAG00000010110) #19	CAMK2B (ENSCLAG00000006106) #20	YKT6 (ENSCLAG00000014974) #21	GCK (ENSCLAG00000004771) #22	MYL7 (ENSCLAG00000009648) #23	POLD2 (ENSCLAG00000005092) #24	AEBP1 (ENSCLAG00000005509) #25	POLM (ENSCLAG00000007360) #26	PGAM2 (ENSCLAG00000004577) #27	DBNL (ENSCLAG00000005058) #28	UBE2D4 (ENSCLAG00000005618) #30	URGCP (ENSCLAG00000006286) #31	MRPS24 (ENSCLAG00000004732) #33	ENSCLAG00000004813	SEPTIN14 (ENSCLAG00000005493)	ZNF713 (ENSCLAG00000007534)	MRPS17 (ENSCLAG00000007650)	NIPSNAP2 (ENSCLAG00000008451)	PSPH (ENSCLAG00000008790)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012.s #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Eurasian red squirrel	MODERN SPECIES	17	NACAD (ENSSVLG00005010480) #8	CCM2 (ENSSVLG00005010354) #9	MYO1G (ENSSVLG00005010085) #10	PURB (ENSSVLG00005010055) #11	ENSSVLG00005009916 #12	ENSSVLG00005009853 ##13	ZMIZ2 (ENSSVLG00005009754) #14	ENSSVLG00005009696 ##12	OGDH (ENSSVLG00005009410) #15	ENSSVLG00005009279 #16	DDX56 (ENSSVLG00005009218) #17	NPC1L1 (ENSSVLG00005008888) #18	NUDCD3 (ENSSVLG00005008781) #19	CAMK2B (ENSSVLG00005007607) #20	ENSSVLG00005007143 #21	GCK (ENSSVLG00005006971) #22	MYL7 (ENSSVLG00005006900) #23	POLD2 (ENSSVLG00005006846) #24	AEBP1 (ENSSVLG00005006770) #25	POLM (ENSSVLG00005006728) #26	PGAM2 (ENSSVLG00005006699) #27	DBNL (ENSSVLG00005006493) #28	UBE2D4 (ENSSVLG00005006358) #30	ENSSVLG00005006336	URGCP (ENSSVLG00005006226) #31	MRPS24 (ENSSVLG00005006180) #33	ENSSVLG00005006086	BLVRA (ENSSVLG00005006049) #34	COA1 (ENSSVLG00005006028) #35	STK17A (ENSSVLG00005005990) #36	HECW1 (ENSSVLG00005005468) #37
Marmotini	ANCESTRAL SPECIES	37	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012.s #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072 #34	ENSGT00960000189879	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996
Alpin marmot	MODERN SPECIES	26	TBRG4 (ENSMMMG00000014785) #7	NACAD (ENSMMMG00000014752) #8	CCM2 (ENSMMMG00000014704) #9	MYO1G (ENSMMMG00000014692) #10	ENSMMMG00000014682	ENSMMMG00000014677	ENSMMMG00000014669 ##13	ZMIZ2 (ENSMMMG00000014533) #14	OGDH (ENSMMMG00000014266) #15	ENSMMMG00000014248 #16	DDX56 (ENSMMMG00000014226) #17	NPC1L1 (ENSMMMG00000014118) #18	NUDCD3 (ENSMMMG00000014107) #19	CAMK2B (ENSMMMG00000012507) #20	YKT6 (ENSMMMG00000012487) #21	GCK (ENSMMMG00000012459) #22	MYL7 (ENSMMMG00000012448) #23	POLD2 (ENSMMMG00000012436) #24	ENSMMMG00000012394 #25	POLM (ENSMMMG00000012375) #26	PGAM2 (ENSMMMG00000012371) #27	DBNL (ENSMMMG00000012313) #28	ENSMMMG00000012291 #30	URGCP (ENSMMMG00000012282) #31	MRPS24 (ENSMMMG00000012279) #33	ENSMMMG00000012270	BLVRA (ENSMMMG00000012252) #34	ENSMMMG00000012217	STK17A (ENSMMMG00000012208) #36	ENSMMMG00000012200	HECW1 (ENSMMMG00000012160) #37
Marmotini_b	ANCESTRAL SPECIES	26	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012.s #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153505.a.a.c.a	ENSGT00390000011072 #34	ENSGT00960000189879	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996
Arctic ground squirrel	MODERN SPECIES	214	NACAD (ENSUPAG00010022077) #8	CCM2 (ENSUPAG00010022066) #9	MYO1G (ENSUPAG00010022057) #10	PURB (ENSUPAG00010022054) #11	H2AZ2 (ENSUPAG00010022047) #12	ENSUPAG00010022046	ENSUPAG00010022045 ##13	ZMIZ2 (ENSUPAG00010022033) #14	OGDH (ENSUPAG00010021984) #15	TMED4 (ENSUPAG00010021975) #16	DDX56 (ENSUPAG00010021974) #17	NPC1L1 (ENSUPAG00010021963) #18	NUDCD3 (ENSUPAG00010021958) #19	CAMK2B (ENSUPAG00010021102) #20	YKT6 (ENSUPAG00010021076) #21	GCK (ENSUPAG00010021047) #22	MYL7 (ENSUPAG00010021036) #23	POLD2 (ENSUPAG00010021026) #24	AEBP1 (ENSUPAG00010020977) #25	POLM (ENSUPAG00010020954) #26	PGAM2 (ENSUPAG00010020948) #27	DBNL (ENSUPAG00010020898) #28
Squirrel	MODERN SPECIES	78	TBRG4 (ENSSTOG00000008370) #7	NACAD (ENSSTOG00000022804) #8	CCM2 (ENSSTOG00000026702) #9	MYO1G (ENSSTOG00000004101) #10	H2AZ2 (ENSSTOG00000011533) #12	ENSSTOG00000010215 ##13	ZMIZ2 (ENSSTOG00000010197) #14	OGDH (ENSSTOG00000000469) #15	TMED4 (ENSSTOG00000014658) #16	DDX56 (ENSSTOG00000000464) #17	NPC1L1 (ENSSTOG00000020879) #18	ENSSTOG00000031145	NUDCD3 (ENSSTOG00000000456) #19	CAMK2B (ENSSTOG00000000450) #20	YKT6 (ENSSTOG00000000448) #21	GCK (ENSSTOG00000002740) #22	MYL7 (ENSSTOG00000002725) #23	POLD2 (ENSSTOG00000002713) #24	AEBP1 (ENSSTOG00000002677) #25	POLM (ENSSTOG00000002662) #26	PGAM2 (ENSSTOG00000008573) #27	DBNL (ENSSTOG00000002644) #28	UBE2D4 (ENSSTOG00000002630) #30	URGCP (ENSSTOG00000010637) #31	MRPS24 (ENSSTOG00000032907) #33	BLVRA (ENSSTOG00000021499) #34	STK17A (ENSSTOG00000026139) #36	HECW1 (ENSSTOG00000016043) #37	MRPL32 (ENSSTOG00000013340)	PSMA2 (ENSSTOG00000013334)	C7orf25 (ENSSTOG00000027844)
Rodentia_B	ANCESTRAL SPECIES	40	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Kangaroo rat	MODERN SPECIES	479	Igfbp1 (ENSDORG00000028494)	Adcy1 (ENSDORG00000000826)	Ramp3 (ENSDORG00000010667)	Tbrg4 (ENSDORG00000013979) #7	Ccm2 (ENSDORG00000001173) #9	Myo1g (ENSDORG00000008897) #10	ENSDORG00000000793 #12	Zmiz2 (ENSDORG00000003702) #14	Ogdh (ENSDORG00000014528) #15	Tmed4 (ENSDORG00000025102) #16	ENSDORG00000026173 #17	Npc1l1 (ENSDORG00000004156) #18	Nudcd3 (ENSDORG00000024793) #19	Camk2b (ENSDORG00000016394) #20	Ykt6 (ENSDORG00000016393) #21	Gck (ENSDORG00000016392) #22	Myl7 (ENSDORG00000016391) #23	Pold2 (ENSDORG00000005386) #24	Aebp1 (ENSDORG00000005385) #25	Polm (ENSDORG00000006893) #26	Pgam2 (ENSDORG00000024532) #27	Dbnl (ENSDORG00000006890) #28	Urgcp (ENSDORG00000009971) #31	Mrps24 (ENSDORG00000028469) #33
Myomorpha	ANCESTRAL SPECIES	50	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Lesser Egyptian jerboa	MODERN SPECIES	49	Tbrg4 (ENSJJAG00000010349) #7	Nacad (ENSJJAG00000023045) #8	Ccm2 (ENSJJAG00000019879) #9	Myo1g (ENSJJAG00000000683) #10	Purb (ENSJJAG00000012921) #11	ENSJJAG00000012094 #12	ENSJJAG00000015423 #13	Zmiz2 (ENSJJAG00000023115) #14	Ogdh (ENSJJAG00000007589) #15	Tmed4 (ENSJJAG00000005100) #16	Ddx56 (ENSJJAG00000014269) #17	Npc1l1 (ENSJJAG00000019937) #18	Nudcd3 (ENSJJAG00000024120) #19	Camk2b (ENSJJAG00000012313) #20	ENSJJAG00000024358 #21	Gck (ENSJJAG00000020695) #22	Myl7 (ENSJJAG00000023280) #23	Pold2 (ENSJJAG00000013260) #24	Aebp1 (ENSJJAG00000006815) #25	Polm (ENSJJAG00000005659) #26	Pgam2 (ENSJJAG00000006198) #27	Dbnl (ENSJJAG00000019824) #28	ENSJJAG00000013146 #30	ENSJJAG00000016812 #31	Mrps24 (ENSJJAG00000011276) #33	Smg1 (ENSJJAG00000018008)	ENSJJAG00000017362	ENSJJAG00000021154	Bmper (ENSJJAG00000009850)	Bbs9 (ENSJJAG00000003244)	Phtf2 (ENSJJAG00000007015)
Muroidea	ANCESTRAL SPECIES	39	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Upper Galilee mountains blind mole rat	MODERN SPECIES	869	Nacad (ENSNGAG00000018356) #8	Ccm2 (ENSNGAG00000022958) #9	Myo1g (ENSNGAG00000024269) #10	Purb (ENSNGAG00000022961) #11	H2az2 (ENSNGAG00000012708) #12	ENSNGAG00000018529 #13	Zmiz2 (ENSNGAG00000021083) #14	Ogdh (ENSNGAG00000022300) #15	ENSNGAG00000013628	Tmed4 (ENSNGAG00000014114) #16	Ddx56 (ENSNGAG00000018785) #17	Npc1l1 (ENSNGAG00000023026) #18	Nudcd3 (ENSNGAG00000001892) #19	Camk2b (ENSNGAG00000024309) #20	Ykt6 (ENSNGAG00000021621) #21	Gck (ENSNGAG00000022694) #22	Myl7 (ENSNGAG00000010256) #23	Pold2 (ENSNGAG00000023318) #24	Aebp1 (ENSNGAG00000021547) #25	Polm (ENSNGAG00000024068) #26	Pgam2 (ENSNGAG00000022542) #27	Dbnl (ENSNGAG00000001208) #28	ENSNGAG00000021393 #30	Urgcp (ENSNGAG00000020683) #31	Mrps24 (ENSNGAG00000021383) #33	ENSNGAG00000015149	Ccdc117 (ENSNGAG00000012546)	ENSNGAG00000016645
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.a.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Northern American deer mouse	MODERN SPECIES	1	Nacad (ENSPEMG00000005783) #8	Ccm2 (ENSPEMG00000018848) #9	Myo1g (ENSPEMG00000013479) #10	ENSPEMG00000018930	Purb (ENSPEMG00000014786) #11	H2az2 (ENSPEMG00000013226) #12	Zmiz2 (ENSPEMG00000010648) #14	Ogdh (ENSPEMG00000001741) #15	ENSPEMG00000030252	Tmed4 (ENSPEMG00000004413) #16	Ddx56 (ENSPEMG00000018351) #17	Npc1l1 (ENSPEMG00000014976) #18	Nudcd3 (ENSPEMG00000014178) #19	Camk2b (ENSPEMG00000000806) #20	Ykt6 (ENSPEMG00000012487) #21	Gck (ENSPEMG00000001040) #22	Myl7 (ENSPEMG00000003767) #23	Pold2 (ENSPEMG00000016023) #24	Polm (ENSPEMG00000013953) #26	Pgam2 (ENSPEMG00000016914) #27	Dbnl (ENSPEMG00000002008) #28	ENSPEMG00000010442 #30	Urgcp (ENSPEMG00000018952) #31	Mrps24 (ENSPEMG00000012062) #33	ENSPEMG00000028247	ENSPEMG00000017379	ENSPEMG00000024821	ENSPEMG00000029702	Znrf3 (ENSPEMG00000005713)	Kremen1 (ENSPEMG00000013999)	Emid1 (ENSPEMG00000005971)
Prairie vole	MODERN SPECIES	89	Tbrg4 (ENSMOCG00000011927) #7	Nacad (ENSMOCG00000016674) #8	Ccm2 (ENSMOCG00000010957) #9	Myo1g (ENSMOCG00000019055) #10	ENSMOCG00000021550 #12	ENSMOCG00000019036 #13	Zmiz2 (ENSMOCG00000004069) #14	Ogdh (ENSMOCG00000015048) #15	Tmed4 (ENSMOCG00000018994) #16	Ddx56 (ENSMOCG00000016782) #17	Npc1l1 (ENSMOCG00000022891) #18	ENSMOCG00000010822	Nudcd3 (ENSMOCG00000008685) #19	Camk2b (ENSMOCG00000003054) #20	Ykt6 (ENSMOCG00000015485) #21	Gck (ENSMOCG00000007909) #22	Myl7 (ENSMOCG00000001155) #23	Pold2 (ENSMOCG00000020553) #24	Aebp1 (ENSMOCG00000015924) #25	Polm (ENSMOCG00000017650) #26	Pgam2 (ENSMOCG00000017141) #27	Dbnl (ENSMOCG00000010776) #28	ENSMOCG00000007622 #30	ENSMOCG00000019147 ##31	Mrps24 (ENSMOCG00000009358) #33	ENSMOCG00000001805	Ccdc117 (ENSMOCG00000017474)	ENSMOCG00000016607	Znrf3 (ENSMOCG00000007694)	Kremen1 (ENSMOCG00000006589)	Emid1 (ENSMOCG00000007842)
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.b #13	ENSGT00950000183087.A.a.b.b.g.m.a.a.a.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b
Golden Hamster	MODERN SPECIES	855		ENSMAUG00000012398	Tbrg4 (ENSMAUG00000012673) #7	Nacad (ENSMAUG00000000441) #8	Ccm2 (ENSMAUG00000019206) #9	Purb (ENSMAUG00000011691) #11	H2az2 (ENSMAUG00000004789) #12	ENSMAUG00000019015 #13	Ogdh (ENSMAUG00000021826) #15	ENSMAUG00000019569 #17	Npc1l1 (ENSMAUG00000014463) #18	ENSMAUG00000018834	Nudcd3 (ENSMAUG00000015962) #19	Camk2b (ENSMAUG00000019715) #20	ENSMAUG00000017858 #21	Gck (ENSMAUG00000003438) #22	Pold2 (ENSMAUG00000008387) #24	Aebp1 (ENSMAUG00000003120) #25	ENSMAUG00000008781 #26	Dbnl (ENSMAUG00000020173) #28	ENSMAUG00000007040 #30	Urgcp (ENSMAUG00000000822) #31	Mrps24 (ENSMAUG00000011298) #33	ENSMAUG00000019831
Chinese hamster chok1gshd	MODERN SPECIES	121	Nacad (ENSCGRG00001013416) #8	Ccm2 (ENSCGRG00001010117) #9	Myo1g (ENSCGRG00001017997) #10	Purb (ENSCGRG00001000874) #11	H2az2 (ENSCGRG00001004602) #12	PPIA (ENSCGRG00001013904) #13	Zmiz2 (ENSCGRG00001000371) #14	Ogdh (ENSCGRG00001018679) #15	Tmed4 (ENSCGRG00001020468) #16	Ddx56 (ENSCGRG00001019019) #17	Npc1l1 (ENSCGRG00001005429) #18	ENSCGRG00001023520	Nudcd3 (ENSCGRG00001022901) #19	Camk2b (ENSCGRG00001022679) #20	Ykt6 (ENSCGRG00001017336) #21	Gck (ENSCGRG00001009989) #22	Myl7 (ENSCGRG00001016475) #23	Pold2 (ENSCGRG00001012036) #24	Aebp1 (ENSCGRG00001018686) #25	Polm (ENSCGRG00001014159) #26	Pgam2 (ENSCGRG00001023475) #27	Dbnl (ENSCGRG00001011369) #28	ENSCGRG00001015643 #30	Urgcp (ENSCGRG00001010492) #31	Mrps24 (ENSCGRG00001009085) #33	ENSCGRG00001004440
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Rat	MODERN SPECIES	5	Myo1g (ENSRNOG00000059140) #10	LOC100360491 (ENSRNOG00000061438)	ENSRNOG00000062895	Purb (ENSRNOG00000069265) #11	AC106663.1 (ENSRNOG00000055372)	H2az2 (ENSRNOG00000052275) #12	Ppia (ENSRNOG00000027864) ##13	Zmiz2 (ENSRNOG00000025923) #14	Ogdh (ENSRNOG00000005130) #15	Tmed4 (ENSRNOG00000005016) #16	Ddx56 (ENSRNOG00000004670) #17	Npc1l1 (ENSRNOG00000049955) #18	Nudcd3 (ENSRNOG00000056148) #19	Camk2b (ENSRNOG00000052080) #20	Ykt6 (ENSRNOG00000014785) #21	Gck (ENSRNOG00000061527) #22	Myl7 (ENSRNOG00000014409) #23	Pold2 (ENSRNOG00000014098) #24	Aebp1 (ENSRNOG00000013720) #25	Polm (ENSRNOG00000013647) #26	Pgam2 (ENSRNOG00000013532) #27	Dbnl (ENSRNOG00000012378) #28	Urgcp (ENSRNOG00000012184) #31	Mrps24 (ENSRNOG00000011979) #33	ENSRNOG00000069799	AC136588.2 (ENSRNOG00000030988)	Ankrd36 (ENSRNOG00000056767)	Ccdc117 (ENSRNOG00000010706)	Xbp1 (ENSRNOG00000010298)	Znrf3 (ENSRNOG00000067305)	Kremen1 (ENSRNOG00000051487)
Mus	ANCESTRAL SPECIES	14	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016813 #8	Ccm2 (MGP_PahariEiJ_G0016814) #9	MGP_PahariEiJ_G0016815	Purb (MGP_PahariEiJ_G0016816) #11	H2az2 (MGP_PahariEiJ_G0016817) #12	Ppia (MGP_PahariEiJ_G0016818) #13	Zmiz2 (MGP_PahariEiJ_G0016819) #14	Ogdh (MGP_PahariEiJ_G0016820) #15	Tmed4 (MGP_PahariEiJ_G0016821) #16	Ddx56 (MGP_PahariEiJ_G0016822) #17	Npc1l1 (MGP_PahariEiJ_G0016823) #18	MGP_PahariEiJ_G0016824	Nudcd3 (MGP_PahariEiJ_G0016825) #19	Camk2b (MGP_PahariEiJ_G0016826) #20	Ykt6 (MGP_PahariEiJ_G0016827) #21	Gck (MGP_PahariEiJ_G0016828) #22	Myl7 (MGP_PahariEiJ_G0016829) #23	Pold2 (MGP_PahariEiJ_G0016830) #24	Aebp1 (MGP_PahariEiJ_G0016831) #25	Polm (MGP_PahariEiJ_G0016832) #26	Pgam2 (MGP_PahariEiJ_G0016833) #27	Dbnl (MGP_PahariEiJ_G0016834) #28	Urgcp (MGP_PahariEiJ_G0016835) #31	Mrps24 (MGP_PahariEiJ_G0016836) #33	Ankrd36 (MGP_PahariEiJ_G0016837)	Ccdc117 (MGP_PahariEiJ_G0016838)	MGP_PahariEiJ_G0016839	Znrf3 (MGP_PahariEiJ_G0016840)	Kremen1 (MGP_PahariEiJ_G0016841)	Emid1 (MGP_PahariEiJ_G0016842)	Rhbdd3 (MGP_PahariEiJ_G0016843)
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Ryukyu mouse	MODERN SPECIES	2	Tbrg4 (MGP_CAROLIEiJ_G0016079) #7	Nacad (MGP_CAROLIEiJ_G0016078) #8	Ccm2 (MGP_CAROLIEiJ_G0016077) #9	Myo1g (MGP_CAROLIEiJ_G0016076) #10	Purb (MGP_CAROLIEiJ_G0016075) #11	H2az2 (MGP_CAROLIEiJ_G0016074) #12	Zmiz2 (MGP_CAROLIEiJ_G0016072) #14	Ogdh (MGP_CAROLIEiJ_G0016071) #15	Tmed4 (MGP_CAROLIEiJ_G0016070) #16	Ddx56 (MGP_CAROLIEiJ_G0016069) #17	Npc1l1 (MGP_CAROLIEiJ_G0016068) #18	MGP_CAROLIEiJ_G0016067	Nudcd3 (MGP_CAROLIEiJ_G0016066) #19	Camk2b (MGP_CAROLIEiJ_G0016065) #20	Ykt6 (MGP_CAROLIEiJ_G0016064) #21	Gck (MGP_CAROLIEiJ_G0016063) #22	Myl7 (MGP_CAROLIEiJ_G0016062) #23	Pold2 (MGP_CAROLIEiJ_G0016061) #24	Aebp1 (MGP_CAROLIEiJ_G0016060) #25	Polm (MGP_CAROLIEiJ_G0016059) #26	Pgam2 (MGP_CAROLIEiJ_G0016058) #27	Dbnl (MGP_CAROLIEiJ_G0016057) #28	Urgcp (MGP_CAROLIEiJ_G0016056) #31	Mrps24 (MGP_CAROLIEiJ_G0016055) #33	Ankrd36 (MGP_CAROLIEiJ_G0016054)	Ccdc117 (MGP_CAROLIEiJ_G0016053)	MGP_CAROLIEiJ_G0016052	Znrf3 (MGP_CAROLIEiJ_G0016051)	Kremen1 (MGP_CAROLIEiJ_G0016050)	Emid1 (MGP_CAROLIEiJ_G0016049)	Rhbdd3 (MGP_CAROLIEiJ_G0016048)
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
Mouse	MODERN SPECIES	2	Tbrg4 (ENSMUSG00000000384) #7	Nacad (ENSMUSG00000041073) #8	Ccm2 (ENSMUSG00000000378) #9	Myo1g (ENSMUSG00000020437) #10	Purb (ENSMUSG00000094483) #11	H2az2 (ENSMUSG00000041126) #12	Ppia (ENSMUSG00000071866) #13	Zmiz2 (ENSMUSG00000041164) #14	Ogdh (ENSMUSG00000020456) #15	Tmed4 (ENSMUSG00000004394) #16	Ddx56 (ENSMUSG00000004393) #17	Npc1l1 (ENSMUSG00000020447) #18	Nudcd3 (ENSMUSG00000053838) #19	Camk2b (ENSMUSG00000057897) #20	Ykt6 (ENSMUSG00000002741) #21	Gck (ENSMUSG00000041798) #22	Myl7 (ENSMUSG00000020469) #23	Pold2 (ENSMUSG00000020471) #24	Aebp1 (ENSMUSG00000020473) #25	Polm (ENSMUSG00000020474) #26	Pgam2 (ENSMUSG00000020475) #27	Dbnl (ENSMUSG00000020476) #28	Urgcp (ENSMUSG00000049680) #31	Mrps24 (ENSMUSG00000020477) #33	Ankrd36 (ENSMUSG00000020481)	Ccdc117 (ENSMUSG00000020482)	Xbp1 (ENSMUSG00000020484)	Znrf3 (ENSMUSG00000041961)	Kremen1 (ENSMUSG00000020393)	Emid1 (ENSMUSG00000034164)	Rhbdd3 (ENSMUSG00000034175)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b.vb #12	ENSGT00950000183087.A.a.b.b.g.m.a.a #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00860000135606	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915.r #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000153661.a.b.a.a.a.b	ENSGT00390000005772	ENSGT00390000017751	ENSGT00940000154006.a	ENSGT00940000158390	ENSGT00940000161542
spretus	MODERN SPECIES	2	MGP_SPRETEiJ_G0016920 #8	Ccm2 (MGP_SPRETEiJ_G0016919) #9	Myo1g (MGP_SPRETEiJ_G0016918) #10	Purb (MGP_SPRETEiJ_G0016917) #11	H2az2 (MGP_SPRETEiJ_G0016916) #12	Ppia (MGP_SPRETEiJ_G0016915) #13	Zmiz2 (MGP_SPRETEiJ_G0016914) #14	Ogdh (MGP_SPRETEiJ_G0016913) #15	Tmed4 (MGP_SPRETEiJ_G0016912) #16	Ddx56 (MGP_SPRETEiJ_G0016911) #17	Npc1l1 (MGP_SPRETEiJ_G0016910) #18	MGP_SPRETEiJ_G0016909	Nudcd3 (MGP_SPRETEiJ_G0016908) #19	Camk2b (MGP_SPRETEiJ_G0016907) #20	Ykt6 (MGP_SPRETEiJ_G0016906) #21	Gck (MGP_SPRETEiJ_G0016905) #22	Myl7 (MGP_SPRETEiJ_G0016904) #23	Pold2 (MGP_SPRETEiJ_G0016903) #24	Aebp1 (MGP_SPRETEiJ_G0016902) #25	Polm (MGP_SPRETEiJ_G0016901) #26	Pgam2 (MGP_SPRETEiJ_G0016900) #27	Dbnl (MGP_SPRETEiJ_G0016899) #28	Urgcp (MGP_SPRETEiJ_G0016898) #31	Mrps24 (MGP_SPRETEiJ_G0016897) #33	Ankrd36 (MGP_SPRETEiJ_G0016896)	Ccdc117 (MGP_SPRETEiJ_G0016895)	MGP_SPRETEiJ_G0016894	Znrf3 (MGP_SPRETEiJ_G0016893)	Kremen1 (MGP_SPRETEiJ_G0016892)	Emid1 (MGP_SPRETEiJ_G0016891)	Rhbdd3 (MGP_SPRETEiJ_G0016890)
Steppe mouse	MODERN SPECIES	3215	Tbrg4 (ENSMSIG00000023048) #7	Nacad (ENSMSIG00000023028) #8	Ccm2 (ENSMSIG00000022897) #9	Myo1g (ENSMSIG00000022846) #10	ENSMSIG00000022839 #11	H2az2 (ENSMSIG00000022792) #12	ENSMSIG00000022760 #13	Zmiz2 (ENSMSIG00000022569) #14	Ogdh (ENSMSIG00000022343) #15	Tmed4 (ENSMSIG00000022316) #16	Ddx56 (ENSMSIG00000022266) #17	Npc1l1 (ENSMSIG00000022038) #18	Nudcd3 (ENSMSIG00000021993) #19	Camk2b (ENSMSIG00000019343) #20	ENSMSIG00000019289 #21	Gck (ENSMSIG00000019231) #22	Myl7 (ENSMSIG00000019206) #23	Pold2 (ENSMSIG00000019181) #24	Aebp1 (ENSMSIG00000019091) #25	Polm (ENSMSIG00000019034) #26	Pgam2 (ENSMSIG00000019017) #27	Dbnl (ENSMSIG00000018944) #28	ENSMSIG00000018927 #30	Urgcp (ENSMSIG00000018825) #31	ENSMSIG00000018806 #33	Ankrd36 (ENSMSIG00000018767)	Ccdc117 (ENSMSIG00000018735)	ENSMSIG00000018714	ENSMSIG00000018656	Emid1 (ENSMSIG00000018580)	Rhbdd3 (ENSMSIG00000018562)
Lagomorpha	ANCESTRAL SPECIES	584																ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23
Rabbit	MODERN SPECIES	1	ENSOCUG00000027132 #8	TBRG4 (ENSOCUG00000007618) #7	CCM2 (ENSOCUG00000015397) #9	ENSOCUG00000039640 #10	ENSOCUG00000024216 #10	ENSOCUG00000008133 #12	ENSOCUG00000016662 ##13	ZMIZ2 (ENSOCUG00000022046) #14	OGDH (ENSOCUG00000002419) #15	TMED4 (ENSOCUG00000003964) #16	DDX56 (ENSOCUG00000022918) #17	NPC1L1 (ENSOCUG00000023032) #18	ENSOCUG00000023828 #19	ENSOCUG00000021803	ENSOCUG00000002981	ENSOCUG00000001018 #22	ENSOCUG00000036640	AEBP1 (ENSOCUG00000014914) #25	POLD2 (ENSOCUG00000014942) #24	POLM (ENSOCUG00000022428) #26	PGAM2 (ENSOCUG00000027853) #27	ENSOCUG00000027855 #28	ENSOCUG00000031138	ENSOCUG00000010530 #31	ENSOCUG00000021755 #33	ENSOCUG00000033651	SEMA3A (ENSOCUG00000011919)	SEMA3D (ENSOCUG00000012016)	GRM3 (ENSOCUG00000007359)	ELAPOR2 (ENSOCUG00000007364)	DMTF1 (ENSOCUG00000009179)
Pika	MODERN SPECIES	61																GCK (ENSOPRG00000001902) #22	MYL7 (ENSOPRG00000001874) #23
Laurasiatheria	ANCESTRAL SPECIES	29	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b #13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Eulipotyphla	ANCESTRAL SPECIES	330														ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23
Common shrew	MODERN SPECIES	11020																GCK (ENSSARG00000006856) #22
Hedgehog	MODERN SPECIES	999														ENSEEUG00000001257 #20	YKT6 (ENSEEUG00000001247) #21	GCK (ENSEEUG00000001219) #22	MYL7 (ENSEEUG00000001197) #23
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Camelidae	ANCESTRAL SPECIES	2	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582
Arabian camel	MODERN SPECIES	33	TBRG4 (ENSCDRG00005002469) #7	ENSCDRG00005002511 #8	ENSCDRG00005002541 #9	MYO1G (ENSCDRG00005002582) #10	PURB (ENSCDRG00005002614) #11	H2AZ2 (ENSCDRG00005002637) #12	ENSCDRG00005002790 ##13	ZMIZ2 (ENSCDRG00005002816) #14	OGDH (ENSCDRG00005002918) #15	TMED4 (ENSCDRG00005003116) #16	DDX56 (ENSCDRG00005003144) #17	NPC1L1 (ENSCDRG00005003185) #18	NUDCD3 (ENSCDRG00005003287) #19	CAMK2B (ENSCDRG00005003656) #20	YKT6 (ENSCDRG00005009780) #21	GCK (ENSCDRG00005009900) #22	MYL7 (ENSCDRG00005010225) #23	POLD2 (ENSCDRG00005010307) #24	AEBP1 (ENSCDRG00005010388) #25	POLM (ENSCDRG00005010471) #26	BLVRA (ENSCDRG00005010641) #34	COA1 (ENSCDRG00005010728) #35	ENSCDRG00005010848 #36	HECW1 (ENSCDRG00005010909) #37	MRPL32 (ENSCDRG00005011105)	C7orf25 (ENSCDRG00005011146)	ENSCDRG00005011309	GLI3 (ENSCDRG00005011370)	INHBA (ENSCDRG00005011609)	SUGCT (ENSCDRG00005011669)	MPLKIP (ENSCDRG00005012010)
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Yarkand deer	MODERN SPECIES	9	TBRG4 (ENSCHYG00000015655) #7	ENSCHYG00000016122 #8	CCM2 (ENSCHYG00000013474) #9	ENSCHYG00000013887	MYO1G (ENSCHYG00000013942) #10	H2AZ2 (ENSCHYG00000014310) #12	ENSCHYG00000014891 ##13	ZMIZ2 (ENSCHYG00000014989) #14	OGDH (ENSCHYG00000015733) #15	TMED4 (ENSCHYG00000016944) #16	DDX56 (ENSCHYG00000017103) #17	NPC1L1 (ENSCHYG00000017516) #18	ENSCHYG00000017740	CAMK2B (ENSCHYG00000017936) #20	YKT6 (ENSCHYG00000019044) #21	GCK (ENSCHYG00000019315) #22	MYL7 (ENSCHYG00000019693) #23	POLD2 (ENSCHYG00000019805) #24	AEBP1 (ENSCHYG00000019970) #25	POLM (ENSCHYG00000020114) #26	ENSCHYG00000020306 #34	ENSCHYG00000020384 #35	STK17A (ENSCHYG00000020545) #36	HECW1 (ENSCHYG00000020708) #37	MRPL32 (ENSCHYG00000021557)	PSMA2 (ENSCHYG00000021589)	C7orf25 (ENSCHYG00000021701)	ENSCHYG00000021719	ENSCHYG00000021751	GLI3 (ENSCHYG00000021798)	INHBA (ENSCHYG00000022041)
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Siberian musk deer	MODERN SPECIES	87	ENSMMSG00000012593 #8	CCM2 (ENSMMSG00000012406) #9	ENSMMSG00000012372	MYO1G (ENSMMSG00000012349) #10	PURB (ENSMMSG00000012313) #11	ENSMMSG00000012177 #12	ENSMMSG00000012142 ##13	ZMIZ2 (ENSMMSG00000012112) #14	OGDH (ENSMMSG00000011703) #15	TMED4 (ENSMMSG00000011629) #16	DDX56 (ENSMMSG00000011564) #17	NPC1L1 (ENSMMSG00000011308) #18	NUDCD3 (ENSMMSG00000011228) #19	CAMK2B (ENSMMSG00000010896) #20	YKT6 (ENSMMSG00000010792) #21	GCK (ENSMMSG00000010554) #22	MYL7 (ENSMMSG00000010461) #23	POLD2 (ENSMMSG00000010417) #24	AEBP1 (ENSMMSG00000010337) #25	POLM (ENSMMSG00000010267) #26	BLVRA (ENSMMSG00000010224) #34	COA1 (ENSMMSG00000010212) #35	STK17A (ENSMMSG00000010195) #36	ENSMMSG00000010172	HECW1 (ENSMMSG00000009873) #37	ENSMMSG00000009803	ENSMMSG00000009775	MRPL32 (ENSMMSG00000009758)	PSMA2 (ENSMMSG00000009746)	C7orf25 (ENSMMSG00000009736)	GLI3 (ENSMMSG00000009711)
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116
Caprinae	ANCESTRAL SPECIES	10	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00950000183087.A.a.a.a.b.b.b.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116
Goat	MODERN SPECIES	23	ENSCHIG00000018109 #8	ENSCHIG00000020338 #9	ENSCHIG00000011273	MYO1G (ENSCHIG00000023267) #10	PURB (ENSCHIG00000011367) #11	ENSCHIG00000023447 #12	ENSCHIG00000022463 ##13	ZMIZ2 (ENSCHIG00000009262) #14	OGDH (ENSCHIG00000006876) #15	TMED4 (ENSCHIG00000019957) #16	DDX56 (ENSCHIG00000014261) #17	NPC1L1 (ENSCHIG00000014938) #18	NUDCD3 (ENSCHIG00000024244) #19	CAMK2B (ENSCHIG00000022969) #20	ENSCHIG00000026885 #21	GCK (ENSCHIG00000015555) #22	MYL7 (ENSCHIG00000022014) #23	POLD2 (ENSCHIG00000009706) #24	AEBP1 (ENSCHIG00000019312) #25	POLM (ENSCHIG00000022903) #26	ENSCHIG00000019345 #34	COA1 (ENSCHIG00000025366) #35	STK17A (ENSCHIG00000012894) #36	ENSCHIG00000022757	HECW1 (ENSCHIG00000018639) #37	MRPL32 (ENSCHIG00000026167)	ENSCHIG00000012524	C7orf25 (ENSCHIG00000009068)	ENSCHIG00000012804	GLI3 (ENSCHIG00000015297)	INHBA (ENSCHIG00000025901)
Rambouillet Sheep	MODERN SPECIES	20	ENSOARG00020002717	TBRG4 (ENSOARG00020002738) #7	ENSOARG00020002798 #9	MYO1G (ENSOARG00020002859) #10	PURB (ENSOARG00020002877) #11	ENSOARG00020002905 #12	PPIA (ENSOARG00020002973) ##13	ZMIZ2 (ENSOARG00020003027) #14	OGDH (ENSOARG00020003217) #15	TMED4 (ENSOARG00020003406) #16	DDX56 (ENSOARG00020003478) #17	NPC1L1 (ENSOARG00020003571) #18	NUDCD3 (ENSOARG00020003922) #19	CAMK2B (ENSOARG00020004150) #20	YKT6 (ENSOARG00020008076) #21	GCK (ENSOARG00020008181) #22	MYL7 (ENSOARG00020008661) #23	POLD2 (ENSOARG00020008736) #24	AEBP1 (ENSOARG00020008818) #25	BLVRA (ENSOARG00020008976) #34	ENSOARG00020009019	COA1 (ENSOARG00020009061) #35	STK17A (ENSOARG00020009115) #36	ENSOARG00020009157	HECW1 (ENSOARG00020009226) #37	ENSOARG00020010002	MRPL32 (ENSOARG00020010057)	ENSOARG00020010111	C7orf25 (ENSOARG00020010245)	ENSOARG00020010281	GLI3 (ENSOARG00020010338)
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
American bison	MODERN SPECIES	3354	TBRG4 (ENSBBBG00000019003) #7	ENSBBBG00000004813 #8	CCM2 (ENSBBBG00000004800) #9	ENSBBBG00000004765	MYO1G (ENSBBBG00000004759) #10	ENSBBBG00000018788 #12	ENSBBBG00000018714 ##13	ZMIZ2 (ENSBBBG00000018698) #14	OGDH (ENSBBBG00000004609) #15	TMED4 (ENSBBBG00000008385) #16	DDX56 (ENSBBBG00000008656) #17	NPC1L1 (ENSBBBG00000018108) #18	NUDCD3 (ENSBBBG00000017993) #19	CAMK2B (ENSBBBG00000017918) #20	YKT6 (ENSBBBG00000016921) #21	GCK (ENSBBBG00000004174) #22	MYL7 (ENSBBBG00000016836) #23	POLD2 (ENSBBBG00000004159) #24	AEBP1 (ENSBBBG00000016760) #25	POLM (ENSBBBG00000016689) #26	BLVRA (ENSBBBG00000016667) #34	COA1 (ENSBBBG00000016648) #35	STK17A (ENSBBBG00000016637) #36	HECW1 (ENSBBBG00000016613) #37	ENSBBBG00000016533	MRPL32 (ENSBBBG00000007141)	PSMA2 (ENSBBBG00000007372)	C7orf25 (ENSBBBG00000016430)	GLI3 (ENSBBBG00000016416)	ENSBBBG00000016287	INHBA (ENSBBBG00000016277)
Bos	ANCESTRAL SPECIES	8	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925	ENSGT00940000157116
Bos_a	ANCESTRAL SPECIES	12	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925	ENSGT00940000157116
Domestic yak	MODERN SPECIES	23	CCM2 (ENSBGRG00000018927) #9	ENSBGRG00000018869	MYO1G (ENSBGRG00000018451) #10	PURB (ENSBGRG00000018382) #11	ENSBGRG00000017843 #12	ENSBGRG00000017631 ##13	ENSBGRG00000017607	ZMIZ2 (ENSBGRG00000017173) #14	OGDH (ENSBGRG00000015524) #15	TMED4 (ENSBGRG00000015262) #16	DDX56 (ENSBGRG00000014704) #17	NPC1L1 (ENSBGRG00000014120) #18	NUDCD3 (ENSBGRG00000013980) #19	CAMK2B (ENSBGRG00000012404) #20	YKT6 (ENSBGRG00000012169) #21	GCK (ENSBGRG00000011827) #22	ENSBGRG00000011683 #23	POLD2 (ENSBGRG00000011507) #24	AEBP1 (ENSBGRG00000011094) #25	POLM (ENSBGRG00000010989) #26	BLVRA (ENSBGRG00000010875) #34	ENSBGRG00000010681 #35	STK17A (ENSBGRG00000010569) #36	ENSBGRG00000010541	HECW1 (ENSBGRG00000010187) #37	MRPL32 (ENSBGRG00000010055)	ENSBGRG00000009970	C7orf25 (ENSBGRG00000009953)	ENSBGRG00000009871	GLI3 (ENSBGRG00000009720)	INHBA (ENSBGRG00000009678)
Wild yak	MODERN SPECIES	1089									OGDH (ENSBMUG00000026182) #15	TMED4 (ENSBMUG00000026190) #16	DDX56 (ENSBMUG00000026191) #17	NPC1L1 (ENSBMUG00000026199) #18	NUDCD3 (ENSBMUG00000026203) #19	CAMK2B (ENSBMUG00000026255) #20	YKT6 (ENSBMUG00000026267) #21	GCK (ENSBMUG00000026269) #22	ENSBMUG00000026273 #23	POLD2 (ENSBMUG00000026274) #24	AEBP1 (ENSBMUG00000026278) #25	POLM (ENSBMUG00000026282) #26	BLVRA (ENSBMUG00000026285) #34	ENSBMUG00000026289 #35	STK17A (ENSBMUG00000026292) #36	HECW1 (ENSBMUG00000026300) #37	ENSBMUG00000026302	MRPL32 (ENSBMUG00000026305)	PSMA2 (ENSBMUG00000026309)	C7orf25 (ENSBMUG00000026312)
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00950000185867	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.s.a #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072.c.a #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000153362.a.cb.a.b.a	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Cow	MODERN SPECIES	23	ENSBTAG00000051248 #8	CCM2 (ENSBTAG00000008090) #9	ENSBTAG00000052466	MYO1G (ENSBTAG00000006377) #10	PURB (ENSBTAG00000052945) #11	H2AZ2 (ENSBTAG00000016975) #12	PPIA (ENSBTAG00000012003) ##13	ZMIZ2 (ENSBTAG00000011997) #14	OGDH (ENSBTAG00000006029) #15	TMED4 (ENSBTAG00000010612) #16	DDX56 (ENSBTAG00000010602) #17	NPC1L1 (ENSBTAG00000044146) #18	NUDCD3 (ENSBTAG00000006325) #19	CAMK2B (ENSBTAG00000012653) #20	YKT6 (ENSBTAG00000000274) #21	GCK (ENSBTAG00000032288) #22	MYL7 (ENSBTAG00000002066) #23	POLD2 (ENSBTAG00000012241) #24	AEBP1 (ENSBTAG00000012237) #25	POLM (ENSBTAG00000007796) #26	BLVRA (ENSBTAG00000013414) #34	COA1 (ENSBTAG00000012968) #35	STK17A (ENSBTAG00000008143) #36	HECW1 (ENSBTAG00000021216) #37	MRPL32 (ENSBTAG00000000991)	PSMA2 (ENSBTAG00000000990)	C4H7orf25 (ENSBTAG00000009472)	GLI3 (ENSBTAG00000010671)	INHBA (ENSBTAG00000048508)	ENSBTAG00000053253	SUGCT (ENSBTAG00000032121)
Hybrid Bos Indicus	MODERN SPECIES	23	CCM2 (ENSBIXG00005006139) #9	ENSBIXG00005018169	MYO1G (ENSBIXG00005018219) #10	PURB (ENSBIXG00005018230) #11	ENSBIXG00005018307 #12	ENSBIXG00005018352 ##13	ZMIZ2 (ENSBIXG00005018480) #14	OGDH (ENSBIXG00005018702) #15	TMED4 (ENSBIXG00005003049) #16	DDX56 (ENSBIXG00005005856) #17	NPC1L1 (ENSBIXG00005018841) #18	NUDCD3 (ENSBIXG00005018870) #19	CAMK2B (ENSBIXG00005019061) #20	ENSBIXG00005003122 #21	ENSBIXG00005003126	GCK (ENSBIXG00005019239) #22	MYL7 (ENSBIXG00005019279) #23	AEBP1 (ENSBIXG00005019312) #25	POLD2 (ENSBIXG00005019352) #24	POLM (ENSBIXG00005005521) #26	BLVRA (ENSBIXG00005003157) #34	ENSBIXG00005006146 #35	HECW1 (ENSBIXG00005019608) #37	MRPL32 (ENSBIXG00005019681)	PSMA2 (ENSBIXG00005007827)	C7orf25 (ENSBIXG00005019735)	ENSBIXG00005006253	GLI3 (ENSBIXG00005019847)	INHBA (ENSBIXG00005019918)	ENSBIXG00005019940	SUGCT (ENSBIXG00005003265)
Cetacea	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.v.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.q	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00390000010089.e.a	ENSGT00940000157866
Blue whale	MODERN SPECIES	20	TBRG4 (ENSBMSG00010011787) #7	ENSBMSG00010011679 #8	CCM2 (ENSBMSG00010011613) #9	MYO1G (ENSBMSG00010011571) #10	PURB (ENSBMSG00010011548) #11	H2AZ2 (ENSBMSG00010011437) #12	ENSBMSG00010011406 ##13	ZMIZ2 (ENSBMSG00010011312) #14	OGDH (ENSBMSG00010011176) #15	TMED4 (ENSBMSG00010011091) #16	DDX56 (ENSBMSG00010011061) #17	NPC1L1 (ENSBMSG00010010957) #18	NUDCD3 (ENSBMSG00010010892) #19	CAMK2B (ENSBMSG00010008944) #20	YKT6 (ENSBMSG00010008716) #21	GCK (ENSBMSG00010008656) #22	MYL7 (ENSBMSG00010008630) #23	POLD2 (ENSBMSG00010008600) #24	AEBP1 (ENSBMSG00010008578) #25	POLM (ENSBMSG00010008448) #26	ENSBMSG00010008391	BLVRA (ENSBMSG00010008368) #34	COA1 (ENSBMSG00010008357) #35	STK17A (ENSBMSG00010008340) #36	HECW1 (ENSBMSG00010008240) #37	ENSBMSG00010008222	ENSBMSG00010008215	PSMA2 (ENSBMSG00010008200)	C7orf25 (ENSBMSG00010008192)	GLI3 (ENSBMSG00010008182)	INHBA (ENSBMSG00010008174)
Odontoceti	ANCESTRAL SPECIES	12	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.v.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.q	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00390000010089.e.a	ENSGT00940000157866
Sperm whale	MODERN SPECIES	16	ENSPCTG00005000553	RAMP3 (ENSPCTG00005000535)	ENSPCTG00005000520	TBRG4 (ENSPCTG00005000487) #7	ENSPCTG00005000414 #8	CCM2 (ENSPCTG00005000360) #9	ENSPCTG00005000278 #10	ENSPCTG00005000252 #10	PURB (ENSPCTG00005000229) #11	H2AZ2 (ENSPCTG00005006851) #12	ENSPCTG00005006814 ##13	ENSPCTG00005006010 #15	ENSPCTG00005005920 #18	CAMK2B (ENSPCTG00005005842) #20	YKT6 (ENSPCTG00005005767) #21	GCK (ENSPCTG00005005671) #22	MYL7 (ENSPCTG00005005606) #23	POLD2 (ENSPCTG00005005587) #24	AEBP1 (ENSPCTG00005005498) #25	BLVRA (ENSPCTG00005005350) #34	COA1 (ENSPCTG00005005324) #35	STK17A (ENSPCTG00005005297) #36	HECW1 (ENSPCTG00005004997) #37	MRPL32 (ENSPCTG00005004935)	PSMA2 (ENSPCTG00005004869)	GLI3 (ENSPCTG00005004827)	INHBA (ENSPCTG00005004805)	ENSPCTG00005004799	SUGCT (ENSPCTG00005004779)	MPLKIP (ENSPCTG00005004756)	CDK13 (ENSPCTG00005004628)
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.v.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.q	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582
Dolphin	MODERN SPECIES	3308															YKT6 (ENSTTRG00000006052) #21	GCK (ENSTTRG00000006046) #22	MYL7 (ENSTTRG00000006040) #23	POLD2 (ENSTTRG00000006036) #24	AEBP1 (ENSTTRG00000006006) #25
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.v.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.q	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582
Vaquita	MODERN SPECIES	20	TBRG4 (ENSPSNG00000011120) #7	ENSPSNG00000011060 #8	CCM2 (ENSPSNG00000010943) #9	MYO1G (ENSPSNG00000010478) #10	PURB (ENSPSNG00000010443) #11	ENSPSNG00000010261 ##12	ENSPSNG00000010215 ##13	ZMIZ2 (ENSPSNG00000010074) #14	OGDH (ENSPSNG00000009503) #15	TMED4 (ENSPSNG00000009286) #16	DDX56 (ENSPSNG00000009245) #17	NPC1L1 (ENSPSNG00000009032) #18	NUDCD3 (ENSPSNG00000008964) #19	CAMK2B (ENSPSNG00000007662) #20	ENSPSNG00000007311 #21	GCK (ENSPSNG00000007079) #22	MYL7 (ENSPSNG00000006995) #23	POLD2 (ENSPSNG00000006941) #24	AEBP1 (ENSPSNG00000006807) #25	POLM (ENSPSNG00000006694) #26	BLVRA (ENSPSNG00000006663) #34	ENSPSNG00000006640 #35	STK17A (ENSPSNG00000006610) #36	HECW1 (ENSPSNG00000006347) #37	ENSPSNG00000006232	PSMA2 (ENSPSNG00000006196)	C7orf25 (ENSPSNG00000006173)	GLI3 (ENSPSNG00000006154)	INHBA (ENSPSNG00000006133)	SUGCT (ENSPSNG00000006038)	MPLKIP (ENSPSNG00000005962)
Monodontidae	ANCESTRAL SPECIES	12	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.a.a.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.v.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.q	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582
Beluga whale	MODERN SPECIES	17	ENSDLEG00000005007 #8	CCM2 (ENSDLEG00000004996) #9	MYO1G (ENSDLEG00000004931) #10	PURB (ENSDLEG00000004919) #11	H2AZ2 (ENSDLEG00000004904) #12	PPIA (ENSDLEG00000004889) ##13	ZMIZ2 (ENSDLEG00000004872) #14	OGDH (ENSDLEG00000004831) #15	TMED4 (ENSDLEG00000004815) #16	DDX56 (ENSDLEG00000004772) #17	ENSDLEG00000004763	NPC1L1 (ENSDLEG00000004616) #18	NUDCD3 (ENSDLEG00000004533) #19	CAMK2B (ENSDLEG00000004510) #20	ENSDLEG00000004496 #21	GCK (ENSDLEG00000004482) #22	MYL7 (ENSDLEG00000004466) #23	POLD2 (ENSDLEG00000004450) #24	AEBP1 (ENSDLEG00000004426) #25	POLM (ENSDLEG00000004372) #26	BLVRA (ENSDLEG00000004351) #34	COA1 (ENSDLEG00000004335) #35	STK17A (ENSDLEG00000004330) #36	HECW1 (ENSDLEG00000004308) #37	MRPL32 (ENSDLEG00000004297)	PSMA2 (ENSDLEG00000004285)	CUNH7orf25 (ENSDLEG00000004273)	GLI3 (ENSDLEG00000004234)	INHBA (ENSDLEG00000004199)	SUGCT (ENSDLEG00000004144)	MPLKIP (ENSDLEG00000004129)
Narwhal	MODERN SPECIES	306	ENSMMNG00015010885 #8	ENSMMNG00015010898 #8	CCM2 (ENSMMNG00015010954) #9	MYO1G (ENSMMNG00015011062) #10	PURB (ENSMMNG00015011093) #11	H2AZ2 (ENSMMNG00015011150) #12	ENSMMNG00015011219 ##13	ZMIZ2 (ENSMMNG00015011242) #14	OGDH (ENSMMNG00015011325) #15	TMED4 (ENSMMNG00015011425) #16	DDX56 (ENSMMNG00015011452) #17	NPC1L1 (ENSMMNG00015011499) #18	NUDCD3 (ENSMMNG00015011532) #19	CAMK2B (ENSMMNG00015011629) #20	ENSMMNG00015011713 #21	GCK (ENSMMNG00015011746) #22	MYL7 (ENSMMNG00015011775) #23	POLD2 (ENSMMNG00015011793) #24	AEBP1 (ENSMMNG00015011811) #25	POLM (ENSMMNG00015011889) #26	BLVRA (ENSMMNG00015011986) #34	COA1 (ENSMMNG00015012011) #35	STK17A (ENSMMNG00015012037) #36	HECW1 (ENSMMNG00015012084) #37	ENSMMNG00015012161	PSMA2 (ENSMMNG00015012176)	C7orf25 (ENSMMNG00015012199)	GLI3 (ENSMMNG00015012212)	INHBA (ENSMMNG00015012234)	SUGCT (ENSMMNG00015012249)	MPLKIP (ENSMMNG00015012269)
Suina	ANCESTRAL SPECIES	19	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00900000143452	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866
Chacoan peccary	MODERN SPECIES	898														CAMK2B (ENSCWAG00000005983) #20	YKT6 (ENSCWAG00000006096) #21	GCK (ENSCWAG00000006145) #22	MYL7 (ENSCWAG00000006252) #23	POLD2 (ENSCWAG00000006301) #24	AEBP1 (ENSCWAG00000006341) #25	POLM (ENSCWAG00000006436) #26	BLVRA (ENSCWAG00000006473) #34	COA1 (ENSCWAG00000006493) #35	STK17A (ENSCWAG00000006512) #36	ENSCWAG00000006541	HECW1 (ENSCWAG00000006585) #37	MRPL32 (ENSCWAG00000006907)	PSMA2 (ENSCWAG00000006930)	C7orf25 (ENSCWAG00000006982)	GLI3 (ENSCWAG00000006996)	INHBA (ENSCWAG00000007021)	SUGCT (ENSCWAG00000007038)
Pig	MODERN SPECIES	9	TBRG4 (ENSSSCG00000016732) #7	ENSSSCG00000016733 #8	CCM2 (ENSSSCG00000016734) #9	MYO1G (ENSSSCG00000016742) #10	PURB (ENSSSCG00000032464) #11	H2AZ2 (ENSSSCG00000016738) #12	ENSSSCG00000016737 ##13	ZMIZ2 (ENSSSCG00000023820) #14	OGDH (ENSSSCG00000016743) #15	TMED4 (ENSSSCG00000016744) #16	DDX56 (ENSSSCG00000016745) #17	NPC1L1 (ENSSSCG00000016746) #18	NUDCD3 (ENSSSCG00000016747) #19	CAMK2B (ENSSSCG00000039535) #20	YKT6 (ENSSSCG00000016750) #21	GCK (ENSSSCG00000016751) #22	POLD2 (ENSSSCG00000016753) #24	AEBP1 (ENSSSCG00000016754) #25	POLM (ENSSSCG00000016755) #26	BLVRA (ENSSSCG00000016756) #34	ENSSSCG00000027491 #35	STK17A (ENSSSCG00000016758) #36	ENSSSCG00000040496	HECW1 (ENSSSCG00000036443) #37	ENSSSCG00000025060	PSMA2 (ENSSSCG00000039582)	C7orf25 (ENSSSCG00000016760)	GLI3 (ENSSSCG00000016763)	INHBA (ENSSSCG00000035077)	SUGCT (ENSSSCG00000035581)	MPLKIP (ENSSSCG00000016768)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Carnivora	ANCESTRAL SPECIES	15	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Felidae	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Cat	MODERN SPECIES	1	ENSFCAG00000052532	TBRG4 (ENSFCAG00000011641) #7	ENSFCAG00000051142 #8	CCM2 (ENSFCAG00000011639) #9	MYO1G (ENSFCAG00000009077) #10	PURB (ENSFCAG00000039247) #11	H2AZ2 (ENSFCAG00000010271) #12	PPIA (ENSFCAG00000009159) ##13	ZMIZ2 (ENSFCAG00000010268) #14	OGDH (ENSFCAG00000010264) #15	TMED4 (ENSFCAG00000010263) #16	NPC1L1 (ENSFCAG00000010256) #18	NUDCD3 (ENSFCAG00000010253) #19	CAMK2B (ENSFCAG00000019129) #20	YKT6 (ENSFCAG00000014362) #21	GCK (ENSFCAG00000014361) #22	MYL7 (ENSFCAG00000014360) #23	POLD2 (ENSFCAG00000014359) #24	AEBP1 (ENSFCAG00000014358) #25	POLM (ENSFCAG00000029004) #26	PGAM2 (ENSFCAG00000023275) #27	DBNL (ENSFCAG00000014355) #28	URGCP (ENSFCAG00000031416) #31	MRPS24 (ENSFCAG00000027947) #33	ENSFCAG00000001776	KLF15 (ENSFCAG00000015732)	CFAP100 (ENSFCAG00000015734)	ZXDC (ENSFCAG00000015744)	UROC1 (ENSFCAG00000015746)	CHST13 (ENSFCAG00000032669)	ENSFCAG00000049526
Panthera	ANCESTRAL SPECIES	1	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778
Tiger	MODERN SPECIES	24	ENSPTIG00000014339	RAMP3 (ENSPTIG00000014876)	ENSPTIG00000015475	TBRG4 (ENSPTIG00000015682) #7	CCM2 (ENSPTIG00000016795) #9	MYO1G (ENSPTIG00000020405) #10	H2AZ2 (ENSPTIG00000020941) #12	ENSPTIG00000021058 ##13	OGDH (ENSPTIG00000011836) #15	TMED4 (ENSPTIG00000019158) #16	DDX56 (ENSPTIG00000019500) #17	ENSPTIG00000020252 #18	NUDCD3 (ENSPTIG00000020534) #19	CAMK2B (ENSPTIG00000003495) #20	YKT6 (ENSPTIG00000012852) #21	GCK (ENSPTIG00000013711) #22	MYL7 (ENSPTIG00000016950) #23	POLD2 (ENSPTIG00000018542) #24	POLM (ENSPTIG00000020448) #26	PGAM2 (ENSPTIG00000020599) #27	DBNL (ENSPTIG00000021038) #28	URGCP (ENSPTIG00000003252) #31	MRPS24 (ENSPTIG00000005496) #33
Panthera_a	ANCESTRAL SPECIES		ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778
leopard	MODERN SPECIES	20	TBRG4 (ENSPPRG00000008410) #7	ENSPPRG00000009276 #8	CCM2 (ENSPPRG00000013217) #9	MYO1G (ENSPPRG00000015941) #10	PURB (ENSPPRG00000016540) #11	H2AZ2 (ENSPPRG00000000061) #12	ENSPPRG00000001180 ##13	ZMIZ2 (ENSPPRG00000006857) #14	OGDH (ENSPPRG00000011132) #15	TMED4 (ENSPPRG00000013278) #16	DDX56 (ENSPPRG00000014594) #17	NPC1L1 (ENSPPRG00000024119) #18	NUDCD3 (ENSPPRG00000023951) #19	CAMK2B (ENSPPRG00000023528) #20	YKT6 (ENSPPRG00000022701) #21	GCK (ENSPPRG00000001844) #22	MYL7 (ENSPPRG00000002309) #23	POLD2 (ENSPPRG00000006721) #24	AEBP1 (ENSPPRG00000007601) #25	POLM (ENSPPRG00000009385) #26	PGAM2 (ENSPPRG00000009633) #27	DBNL (ENSPPRG00000016242) #28	URGCP (ENSPPRG00000019392) #31	MRPS24 (ENSPPRG00000019882) #33
lion	MODERN SPECIES	2	ENSPLOG00000008179 #8	TBRG4 (ENSPLOG00000008131) #7	CCM2 (ENSPLOG00000007935) #9	MYO1G (ENSPLOG00000007755) #10	PURB (ENSPLOG00000007726) #11	H2AZ2 (ENSPLOG00000007660) #12	ENSPLOG00000007614 ##13	ZMIZ2 (ENSPLOG00000007381) #14	OGDH (ENSPLOG00000007164) #15	TMED4 (ENSPLOG00000007034) #16	DDX56 (ENSPLOG00000006977) #17	NPC1L1 (ENSPLOG00000006816) #18	NUDCD3 (ENSPLOG00000006720) #19	CAMK2B (ENSPLOG00000005761) #20	YKT6 (ENSPLOG00000005393) #21	GCK (ENSPLOG00000005357) #22	MYL7 (ENSPLOG00000005336) #23	POLD2 (ENSPLOG00000005310) #24	AEBP1 (ENSPLOG00000005280) #25	POLM (ENSPLOG00000005263) #26	PGAM2 (ENSPLOG00000005255) #27	DBNL (ENSPLOG00000005208) #28	URGCP (ENSPLOG00000005169) #31	MRPS24 (ENSPLOG00000005156) #33	ALDH1L1 (ENSPLOG00000004392)	KLF15 (ENSPLOG00000004355)	CFAP100 (ENSPLOG00000004337)	ZXDC (ENSPLOG00000004315)	UROC1 (ENSPLOG00000004294)	CHST13 (ENSPLOG00000004278)	C3orf22 (ENSPLOG00000004263)
Caniformia	ANCESTRAL SPECIES	11	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT00900000140979.b ##12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Canidae	ANCESTRAL SPECIES	69	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.a.ab ##12	ENSGT00950000183087.A.a.a.b.p.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Canis_lupus	ANCESTRAL SPECIES	52	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.a.ab ##12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000010128.p.a.b.b
Dog	MODERN SPECIES	7	ENSCAFG00845010904	TBRG4 (ENSCAFG00845010926) #7	ENSCAFG00845010993 #8	CCM2 (ENSCAFG00845011022) #9	MYO1G (ENSCAFG00845011123) #10	H2AFV (ENSCAFG00845011363) ##12	RPL37 (ENSCAFG00845011502)	PPIA (ENSCAFG00845011538) ##13	ZMIZ2 (ENSCAFG00845011634) #14	OGDH (ENSCAFG00845012087) #15	TMED4 (ENSCAFG00845012302) #17	NPC1L1 (ENSCAFG00845012489) #18	NUDCD3 (ENSCAFG00845012602) #19	CAMK2B (ENSCAFG00845012770) #20	YKT6 (ENSCAFG00845013042) #21	GCK (ENSCAFG00845013118) #22	MYL7 (ENSCAFG00845005721) #23	POLD2 (ENSCAFG00845005836) #24	AEBP1 (ENSCAFG00845005991) #25	POLM (ENSCAFG00845006272) #26	PGAM2 (ENSCAFG00845006374) #27	DBNL (ENSCAFG00845006509) #28	URGCP (ENSCAFG00845006768) #31	ENSCAFG00845006854 #33	ENSCAFG00845006945	ENSCAFG00845007156	ENSCAFG00845007400	ENSCAFG00845007653	ENSCAFG00845007944	ZNF425 (ENSCAFG00845007981)	ZNF398 (ENSCAFG00845008073)
Dingo	MODERN SPECIES	319	ENSCAFG00020019791 #8	CCM2 (ENSCAFG00020019780) #9	MYO1G (ENSCAFG00020019769) #10	PURB (ENSCAFG00020019767) #11	ENSCAFG00020019741 ##12	ENSCAFG00020019735	ENSCAFG00020019732 ##13	ZMIZ2 (ENSCAFG00020019721) #14	OGDH (ENSCAFG00020019711) #15	TMED4 (ENSCAFG00020019707) #16	DDX56 (ENSCAFG00020019695) #17	NPC1L1 (ENSCAFG00020019646) #18	NUDCD3 (ENSCAFG00020019639) #19	CAMK2B (ENSCAFG00020016629) #20	YKT6 (ENSCAFG00020016566) #21	GCK (ENSCAFG00020016524) #22	MYL7 (ENSCAFG00020016519) #23	POLD2 (ENSCAFG00020016514) #24	AEBP1 (ENSCAFG00020016512) #25	POLM (ENSCAFG00020016508) #26	PGAM2 (ENSCAFG00020016505) #27	DBNL (ENSCAFG00020016499) #28	URGCP (ENSCAFG00020016495) #31	MRPS24 (ENSCAFG00020016492) #33	ENSCAFG00020016487
Red fox	MODERN SPECIES	274	ENSVVUG00000015457 #8	CCM2 (ENSVVUG00000015437) #9	MYO1G (ENSVVUG00000012148) #10	PURB (ENSVVUG00000012004) #11	ENSVVUG00000011992 ##12	ENSVVUG00000011986 ##13	ENSVVUG00000011981 ##13	ZMIZ2 (ENSVVUG00000011961) #14	OGDH (ENSVVUG00000011930) #15	TMED4 (ENSVVUG00000011912) #16	DDX56 (ENSVVUG00000011905) #17	NPC1L1 (ENSVVUG00000011887) #18	NUDCD3 (ENSVVUG00000011881) #19	CAMK2B (ENSVVUG00000008671) #20	YKT6 (ENSVVUG00000008511) #21	GCK (ENSVVUG00000008505) #22	MYL7 (ENSVVUG00000008494) #23	POLD2 (ENSVVUG00000008484) #24	AEBP1 (ENSVVUG00000008470) #25	POLM (ENSVVUG00000008318) #26	PGAM2 (ENSVVUG00000008295) #27	DBNL (ENSVVUG00000008287) #28	URGCP (ENSVVUG00000008277) #31	ENSVVUG00000008273 #33	ENSVVUG00000008267
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT00900000140979.b ##12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179.y #33
Mustelinae	ANCESTRAL SPECIES	85	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179.y #33	ENSGT00910000144359	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.a
American mink	MODERN SPECIES	245	TBRG4 (ENSNVIG00000021997) #7	ENSNVIG00000021965 #8	CCM2 (ENSNVIG00000021932) #9	MYO1G (ENSNVIG00000021893) #10	PURB (ENSNVIG00000021882) #11	ENSNVIG00000021873 ##13	ZMIZ2 (ENSNVIG00000021773) #14	OGDH (ENSNVIG00000021703) #15	TMED4 (ENSNVIG00000021686) #16	DDX56 (ENSNVIG00000021632) #17	ENSNVIG00000021611 #18	ENSNVIG00000021585	NUDCD3 (ENSNVIG00000021579) #19	CAMK2B (ENSNVIG00000021221) #20	YKT6 (ENSNVIG00000021168) #21	GCK (ENSNVIG00000021119) #22	MYL7 (ENSNVIG00000021107) #23	POLD2 (ENSNVIG00000021087) #24	AEBP1 (ENSNVIG00000021021) #25	POLM (ENSNVIG00000021016) #26	PGAM2 (ENSNVIG00000021011) #27	DBNL (ENSNVIG00000020945) #28	URGCP (ENSNVIG00000020932) #31	ENSNVIG00000020926 #33	UBD (ENSNVIG00000020921)	OR2I1P (ENSNVIG00000020908)
Ferret	MODERN SPECIES	165	CCM2 (ENSMPUG00000018187) #9	MYO1G (ENSMPUG00000018188) #10	H2AZ2 (ENSMPUG00000018189) #12	ENSMPUG00000018190 ##13	ENSMPUG00000018191 #14	ENSMPUG00000018192	ENSMPUG00000018193	OGDH (ENSMPUG00000018194) #15	TMED4 (ENSMPUG00000018195) #16	DDX56 (ENSMPUG00000018196) #17	NPC1L1 (ENSMPUG00000018197) #18	NUDCD3 (ENSMPUG00000018198) #19	CAMK2B (ENSMPUG00000018199) #20	ENSMPUG00000018391	ENSMPUG00000018200 #21	GCK (ENSMPUG00000018201) #22	MYL7 (ENSMPUG00000018202) #23	ENSMPUG00000018203 #24	AEBP1 (ENSMPUG00000018204) #25	ENSMPUG00000018205	POLM (ENSMPUG00000018206) #26	ENSMPUG00000018392	PGAM2 (ENSMPUG00000018207) #27	DBNL (ENSMPUG00000018208) #28	URGCP (ENSMPUG00000018209) #31	ENSMPUG00000018210 #33	OR2I1P (ENSMPUG00000018393)	ENSMPUG00000018211	ENSMPUG00000018212	ENSMPUG00000018213	ENSMPUG00000018214
Ursidae	ANCESTRAL SPECIES	12	ENSGT00390000016168.a #9	ENSGT00940000158053.c #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.b.b ##13	ENSGT00900000140979.b ##12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012.x #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179.y.b #33	ENSGT00390000011179.y.a #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b.eb
Ursus	ANCESTRAL SPECIES	47	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053.c #10	ENSGT00900000140979.a.b #12	ENSGT00950000183162.a.b #11	ENSGT00900000140979.b ##12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012.x #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179.y.b #33	ENSGT00390000011179.y.a #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b.eb
American black bear	MODERN SPECIES	322														CAMK2B (ENSUAMG00000005274) #20	YKT6 (ENSUAMG00000004717) #21	GCK (ENSUAMG00000004714) #22	MYL7 (ENSUAMG00000004709) #23	POLD2 (ENSUAMG00000004707) #24	AEBP1 (ENSUAMG00000004703) #25	ENSUAMG00000004700 #26	ENSUAMG00000004699 #26	PGAM2 (ENSUAMG00000004693) #27	DBNL (ENSUAMG00000004505) #28	URGCP (ENSUAMG00000004490) #31	ENSUAMG00000004487 #33
Giant Panda	MODERN SPECIES		TBRG4 (ENSAMEG00000017859) #7	ENSAMEG00000028121 #8	CCM2 (ENSAMEG00000017844) #9	MYO1G (ENSAMEG00000017805) #10	PURB (ENSAMEG00000030637) #11	ENSAMEG00000017799 #12	ENSAMEG00000017784 ##13	ZMIZ2 (ENSAMEG00000017768) #14	OGDH (ENSAMEG00000017730) #15	TMED4 (ENSAMEG00000017721) #16	DDX56 (ENSAMEG00000017711) #17	NPC1L1 (ENSAMEG00000017673) #18	NUDCD3 (ENSAMEG00000017668) #19	CAMK2B (ENSAMEG00000017625) #20	YKT6 (ENSAMEG00000017618) #21	GCK (ENSAMEG00000017601) #22	MYL7 (ENSAMEG00000017578) #23	POLD2 (ENSAMEG00000017560) #24	POLM (ENSAMEG00000017526) #26	ENSAMEG00000017522 #27	ENSAMEG00000017502 #28	ENSAMEG00000028932	ENSAMEG00000024440	EIF2A (ENSAMEG00000010505)	SELENOT (ENSAMEG00000008718)	ERICH6 (ENSAMEG00000008727)	SIAH2 (ENSAMEG00000008730)	MINDY4B (ENSAMEG00000008742)	CLRN1 (ENSAMEG00000008747)	GPR171 (ENSAMEG00000019039)	P2RY14 (ENSAMEG00000019052)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996	ENSGT00550000074870.b
Equus	ANCESTRAL SPECIES	57	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.a.a.b.b ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33	ENSGT00390000011072 #34	ENSGT00440000033985 #35	ENSGT00940000154014.a #36	ENSGT00940000158294 #37	ENSGT00390000014996.u	ENSGT00550000074870.b
Horse	MODERN SPECIES	25	CCM2 (ENSECAG00000017258) #9	MYO1G (ENSECAG00000017799) #10	PURB (ENSECAG00000017685) #11	H2AZ2 (ENSECAG00000016692) #12	ENSECAG00000016673 ##13	ZMIZ2 (ENSECAG00000024843) #14	OGDH (ENSECAG00000023953) #15	TMED4 (ENSECAG00000016918) #16	DDX56 (ENSECAG00000019897) #17	ENSECAG00000032300	NPC1L1 (ENSECAG00000023982) #18	ENSECAG00000055483	NUDCD3 (ENSECAG00000022535) #19	CAMK2B (ENSECAG00000017000) #20	YKT6 (ENSECAG00000010316) #21	GCK (ENSECAG00000022171) #22	MYL7 (ENSECAG00000018912) #23	POLD2 (ENSECAG00000018009) #24	AEBP1 (ENSECAG00000019884) #25	POLM (ENSECAG00000013117) #26	PGAM2 (ENSECAG00000046525) #27	DBNL (ENSECAG00000012048) #28	UBE2D4 (ENSECAG00000019978) #30	URGCP (ENSECAG00000017344) #31	MRPS24 (ENSECAG00000014621) #33	ENSECAG00000009786	BLVRA (ENSECAG00000011650) #34	COA1 (ENSECAG00000011136) #35	STK17A (ENSECAG00000006915) #36	HECW1 (ENSECAG00000010537) #37	PSMA2 (ENSECAG00000020597)
Donkey	MODERN SPECIES		ENSEASG00005034463	ENSEASG00005027726 #8	CCM2 (ENSEASG00005017834) #9	MYO1G (ENSEASG00005017831) #10	PURB (ENSEASG00005033772) #11	H2AZ2 (ENSEASG00005025915) #12	ENSEASG00005017822 ##13	ZMIZ2 (ENSEASG00005017817) #14	OGDH (ENSEASG00005017801) #15	ENSEASG00005035492 #16	DDX56 (ENSEASG00005017795) #17	NPC1L1 (ENSEASG00005017780) #18	NUDCD3 (ENSEASG00005017767) #19	CAMK2B (ENSEASG00005017762) #20	YKT6 (ENSEASG00005017757) #21	GCK (ENSEASG00005017749) #22	MYL7 (ENSEASG00005017744) #23	POLD2 (ENSEASG00005017741) #24	AEBP1 (ENSEASG00005017728) #25	POLM (ENSEASG00005017723) #26	PGAM2 (ENSEASG00005017720) #27	DBNL (ENSEASG00005017717) #28	UBE2D4 (ENSEASG00005017715) #30	URGCP (ENSEASG00005017713) #31	MRPS24 (ENSEASG00005030446) #33	BLVRA (ENSEASG00005017707) #34	COA1 (ENSEASG00005029281) #35	STK17A (ENSEASG00005017699) #36	HECW1 (ENSEASG00005017685) #37	ENSEASG00005027314	PSMA2 (ENSEASG00005017678)
Chiroptera	ANCESTRAL SPECIES	67	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.b #13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Megabat	MODERN SPECIES	6580														CAMK2B (ENSPVAG00000008082) #20	YKT6 (ENSPVAG00000008081) #21	GCK (ENSPVAG00000008079) #22	MYL7 (ENSPVAG00000008077) #23	POLD2 (ENSPVAG00000008075) #24	AEBP1 (ENSPVAG00000008074) #25	POLM (ENSPVAG00000008070) #26	PGAM2 (ENSPVAG00000008069) #27	DBNL (ENSPVAG00000008067) #28
Microchiroptera	ANCESTRAL SPECIES	59	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Microbat	MODERN SPECIES	1823															ENSMLUG00000005479 #21	GCK (ENSMLUG00000012016) #22	MYL7 (ENSMLUG00000012005) #23	POLD2 (ENSMLUG00000011994) #24	AEBP1 (ENSMLUG00000011971) #25	POLM (ENSMLUG00000011953) #26	PGAM2 (ENSMLUG00000011943) #27	DBNL (ENSMLUG00000011929) #28	UBE2D4 (ENSMLUG00000011919) #30	URGCP (ENSMLUG00000005131) #31	MRPS24 (ENSMLUG00000005121) #33
Greater horseshoe bat	MODERN SPECIES	12	TBRG4 (ENSRFEG00010010842) #7	ENSRFEG00010010802 #8	CCM2 (ENSRFEG00010010468) #9	MYO1G (ENSRFEG00010021347) #10	PURB (ENSRFEG00010021312) #11	H2AZ2 (ENSRFEG00010021273) #12	ENSRFEG00010021241 ##13	ZMIZ2 (ENSRFEG00010021151) #14	OGDH (ENSRFEG00010021036) #15	ENSRFEG00010020979 #16	DDX56 (ENSRFEG00010020937) #17	NPC1L1 (ENSRFEG00010020867) #18	NUDCD3 (ENSRFEG00010020831) #19	CAMK2B (ENSRFEG00010020714) #20	YKT6 (ENSRFEG00010020632) #21	GCK (ENSRFEG00010020533) #22	MYL7 (ENSRFEG00010020461) #23	POLD2 (ENSRFEG00010020433) #24	AEBP1 (ENSRFEG00010020403) #25	POLM (ENSRFEG00010020319) #26	PGAM2 (ENSRFEG00010020304) #27	DBNL (ENSRFEG00010020128) #28	URGCP (ENSRFEG00010020016) #31	MRPS24 (ENSRFEG00010019993) #33
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00950000183162.a.b #11	ENSGT00900000140979.b ##12	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Afrotheria	ANCESTRAL SPECIES	148	ENSGT00940000161026	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Tenrec	MODERN SPECIES	13697																GCK (ENSETEG00000018598) #22
Afrotheria_a	ANCESTRAL SPECIES	152	ENSGT00940000161026	ENSGT01030000234607.A.a.b.a #7	ENSGT00940000161501 #8	ENSGT00390000016168.a #9	ENSGT00940000158053 #10	ENSGT00900000140979.a.b #12	ENSGT00950000183087.A.a.b.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28	ENSGT00940000154390.A.j #31	ENSGT00390000011179 #33
Hyrax	MODERN SPECIES	713																GCK (ENSPCAG00000010715) #22
Elephant	MODERN SPECIES	491	RAMP3 (ENSLAFG00000004903)	TBRG4 (ENSLAFG00000015721) #7	ENSLAFG00000007691 #8	CCM2 (ENSLAFG00000003219) #9	MYO1G (ENSLAFG00000009323) #10	H2AZ2 (ENSLAFG00000006180) #12	ENSLAFG00000011345 ##13	ZMIZ2 (ENSLAFG00000010282) #14	OGDH (ENSLAFG00000013723) #15	TMED4 (ENSLAFG00000018216) #16	DDX56 (ENSLAFG00000018206) #17	NPC1L1 (ENSLAFG00000018200) #18	NUDCD3 (ENSLAFG00000012250) #19	CAMK2B (ENSLAFG00000012840) #20	YKT6 (ENSLAFG00000012838) #21	GCK (ENSLAFG00000020833) #22	MYL7 (ENSLAFG00000022961) #23	POLD2 (ENSLAFG00000022905) #24	AEBP1 (ENSLAFG00000014436) #25	POLM (ENSLAFG00000010390) #26	PGAM2 (ENSLAFG00000026429) #27	DBNL (ENSLAFG00000004682) #28	URGCP (ENSLAFG00000031339) #31	MRPS24 (ENSLAFG00000011905) #33	GPRIN2 (ENSLAFG00000016467)	ENSLAFG00000016206	SHLD2 (ENSLAFG00000022147)	ENSLAFG00000012059	ENSLAFG00000011199	SNCG (ENSLAFG00000032751)	MMRN2 (ENSLAFG00000012825)
Xenarthra	ANCESTRAL SPECIES	771																ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000158490 #26	ENSGT00950000182926.b.c #27	ENSGT00940000156732 #28
Armadillo	MODERN SPECIES	1849																GCK (ENSDNOG00000015156) #22	MYL7 (ENSDNOG00000032380) #23	POLD2 (ENSDNOG00000044199) #24	AEBP1 (ENSDNOG00000048568) #25	POLM (ENSDNOG00000005765) #26	PGAM2 (ENSDNOG00000024480) #27	DBNL (ENSDNOG00000024838) #28
Sloth	MODERN SPECIES	774																ENSCHOG00000013302 #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00940000159885	ENSGT00530000064017.b	ENSGT00390000011010.b	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.B.v.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00730000111410	ENSGT00950000183558	ENSGT00390000018558	ENSGT00940000161212	ENSGT00390000017387	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663	ENSGT00390000005197.b	ENSGT00940000157086.b	ENSGT00730000111217	ENSGT00730000111369
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000159885	ENSGT00530000064017.b	ENSGT00390000011010.b	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.B.v.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00730000111410	ENSGT00950000183558	ENSGT00390000018558	ENSGT00940000161212	ENSGT00390000017387	ENSGT00530000063853.a.a.a	ENSGT00940000154347.a	ENSGT00940000160663	ENSGT00390000005197.b	ENSGT00940000157086.b	ENSGT00730000111217	ENSGT00730000111369
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000159885	ENSGT00530000064017.b	ENSGT00390000011010.b	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.B.v.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00730000111410	ENSGT00950000183558	ENSGT00390000018558	ENSGT00940000161212	ENSGT00390000017387	ENSGT00940000154347.a	ENSGT00940000160663	ENSGT00390000005197.b	ENSGT00940000157086.b	ENSGT00730000111217	ENSGT00730000111369	ENSGT00940000160096
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000159885	ENSGT00530000064017.b	ENSGT00390000011010.b.a	ENSGT00940000161587	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183087.B.v.a ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00730000111410	ENSGT00950000183558	ENSGT00390000018558	ENSGT00940000161212	ENSGT00390000017387	ENSGT00940000154347.a	ENSGT00940000160663	ENSGT00950000185366	ENSGT00390000005197.b	ENSGT00940000157086.b	ENSGT00970000197098	ENSGT00390000012286
koala	MODERN SPECIES	15	SEMA4C (ENSPCIG00000009286)	ENSPCIG00000033408	ENSPCIG00000009293	ACTR1B (ENSPCIG00000009295)	PURB (ENSPCIG00000009296) #11	H2AZ2 (ENSPCIG00000009301) #12	ENSPCIG00000009309 ##13	ZMIZ2 (ENSPCIG00000009316) #14	OGDH (ENSPCIG00000009327) #15	ENSPCIG00000009332 #16	DDX56 (ENSPCIG00000009336) #17	NPC1L1 (ENSPCIG00000009343) #18	NUDCD3 (ENSPCIG00000009349) #19	CAMK2B (ENSPCIG00000009356) #20	YKT6 (ENSPCIG00000009363) #21	GCK (ENSPCIG00000009364) #22	MYL7 (ENSPCIG00000009366) #23	POLD2 (ENSPCIG00000009368) #24	ENSPCIG00000009371 #25	ENSPCIG00000009378	ELP (ENSPCIG00000031725)	PIGT (ENSPCIG00000007641)	ENSPCIG00000007649	DBNDD2 (ENSPCIG00000032154)	ENSPCIG00000004066	SYS1 (ENSPCIG00000037282)	SDC4 (ENSPCIG00000014162)	ENSPCIG00000001696	ENSPCIG00000001676	ENSPCIG00000003480	RBPJL (ENSPCIG00000035128)
Common wonbat	MODERN SPECIES	35	SEMA4C (ENSVURG00010003786)	ENSVURG00010003765	ENSVURG00010003754	ACTR1B (ENSVURG00010003742)	PURB (ENSVURG00010003726) #11	H2AZ2 (ENSVURG00010003716) #12	ENSVURG00010003702 ##13	ZMIZ2 (ENSVURG00010003581) #14	OGDH (ENSVURG00010003489) #15	TMED4 (ENSVURG00010003416) #16	DDX56 (ENSVURG00010003398) #17	NPC1L1 (ENSVURG00010002742) #18	ENSVURG00010002678	CAMK2B (ENSVURG00010002584) #20	YKT6 (ENSVURG00010002526) #21	GCK (ENSVURG00010002504) #22	MYL7 (ENSVURG00010002490) #23	POLD2 (ENSVURG00010002444) #24	AEBP1 (ENSVURG00010002418) #25	ENSVURG00010002410	ENSVURG00010002402	PIGT (ENSVURG00010002242)	DBNDD2 (ENSVURG00010002204)	SYS1 (ENSVURG00010002162)	SDC4 (ENSVURG00010002146)	ENSVURG00010002136	RBPJL (ENSVURG00010002093)	MATN4 (ENSVURG00010001996)	ENSVURG00010001975	ENSVURG00010001962	ENSVURG00010001948
Wallaby	MODERN SPECIES	1611																GCK (ENSMEUG00000001332) #22	MYL7 (ENSMEUG00000001322) #23
Tasmanian devil	MODERN SPECIES	1	CNNM3 (ENSSHAG00000017697)	ANKRD23 (ENSSHAG00000028247)	SEMA4C (ENSSHAG00000017454)	ENSSHAG00000022480	ENSSHAG00000022425	ENSSHAG00000017342	ENSSHAG00000017127 #12	ENSSHAG00000017062 ##13	ZMIZ2 (ENSSHAG00000016952) #14	OGDH (ENSSHAG00000016718) #15	DDX56 (ENSSHAG00000016615) #17	NPC1L1 (ENSSHAG00000016456) #18	NUDCD3 (ENSSHAG00000026201) #19	CAMK2B (ENSSHAG00000015076) #20	YKT6 (ENSSHAG00000014984) #21	GCK (ENSSHAG00000014686) #22	MYL7 (ENSSHAG00000014614) #23	POLD2 (ENSSHAG00000014500) #24	ENSSHAG00000014422 #25	ENSSHAG00000002717	PIGT (ENSSHAG00000014088)	ENSSHAG00000014175	DBNDD2 (ENSSHAG00000024992)	ENSSHAG00000013807	ENSSHAG00000028228	SYS1 (ENSSHAG00000021723)	SDC4 (ENSSHAG00000013574)	ENSSHAG00000022888	RBPJL (ENSSHAG00000013207)	ENSSHAG00000013164	ENSSHAG00000012755
Opossum	MODERN SPECIES		COX5B (ENSMODG00000016060)	ACTR1B (ENSMODG00000016067)	PURB (ENSMODG00000016071) #11	H2AZ2 (ENSMODG00000038487) #12	ENSMODG00000016089 ##13	ZMIZ2 (ENSMODG00000016099) #14	OGDH (ENSMODG00000016121) #15	ENSMODG00000012792 #16	DDX56 (ENSMODG00000016137) #17	NPC1L1 (ENSMODG00000016148) #18	ENSMODG00000023234	NUDCD3 (ENSMODG00000016152) #19	ENSMODG00000048231	CAMK2B (ENSMODG00000016162) #20	YKT6 (ENSMODG00000048366) #21	GCK (ENSMODG00000016167) #22	MYL7 (ENSMODG00000016168) #23	POLD2 (ENSMODG00000016172) #24	AEBP1 (ENSMODG00000016176) #25	WFDC2 (ENSMODG00000016177)	ELP (ENSMODG00000023237)	ENSMODG00000044504	PIGT (ENSMODG00000016178)	DBNDD2 (ENSMODG00000016180)	ENSMODG00000050195	ENSMODG00000046355	SYS1 (ENSMODG00000045438)	SDC4 (ENSMODG00000042119)	RBPJL (ENSMODG00000016187)	MATN4 (ENSMODG00000016189)	ENSMODG00000051289
Platypus	DUPLICATION
Platypus	MODERN SPECIES	2	CHEK1 (ENSOANG00000006301)	ENSOANG00000046677	PUS3 (ENSOANG00000000406)	ENSOANG00000012968	CDON (ENSOANG00000003430)	RPUSD4 (ENSOANG00000007247)	FAM118B (ENSOANG00000046124)	SRPRA (ENSOANG00000051121)	FOXRED1 (ENSOANG00000001155)	ENSOANG00000048675	ENSOANG00000045551 #22	ENSOANG00000037431	ENSOANG00000043306	ENSOANG00000012105	ENSOANG00000003450 #21	ENSOANG00000006506 #22	MYL7 (ENSOANG00000006505) #23	POLD2 (ENSOANG00000006504) #24	AEBP1 (ENSOANG00000006502) #25	POLM (ENSOANG00000042350) #26	ENSOANG00000041307 #27	DBNL (ENSOANG00000000599) #28	ENSOANG00000046797 #28	ENSOANG00000048107 #30	ENSOANG00000037773 #31	SLC20A1 (ENSOANG00000003390)	NT5DC4 (ENSOANG00000012006)	ENSOANG00000011171	ENSOANG00000044856	ENSOANG00000005197	ENSOANG00000010546
Platypus	MODERN SPECIES	2	ENSOANG00000040851	PKNOX2 (ENSOANG00000049408)	FEZ1 (ENSOANG00000000318)	EI24 (ENSOANG00000006304)	STT3A (ENSOANG00000006302)	CHEK1 (ENSOANG00000006301)	ENSOANG00000046677	PUS3 (ENSOANG00000000406)	ENSOANG00000012968	CDON (ENSOANG00000003430)	RPUSD4 (ENSOANG00000007247)	FAM118B (ENSOANG00000046124)	SRPRA (ENSOANG00000051121)	FOXRED1 (ENSOANG00000001155)	ENSOANG00000048675	ENSOANG00000045551 #22	ENSOANG00000037431	ENSOANG00000043306	ENSOANG00000012105	ENSOANG00000003450 #21	ENSOANG00000006506 #22	MYL7 (ENSOANG00000006505) #23	POLD2 (ENSOANG00000006504) #24	AEBP1 (ENSOANG00000006502) #25	POLM (ENSOANG00000042350) #26	ENSOANG00000041307 #27	DBNL (ENSOANG00000000599) #28	ENSOANG00000046797 #28	ENSOANG00000048107 #30	ENSOANG00000037773 #31	SLC20A1 (ENSOANG00000003390)
Sauria	ANCESTRAL SPECIES	27	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.jb	ENSGT00950000182943.kb.a	ENSGT00950000182943.kb.b.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.jb	ENSGT00950000182943.kb.a	ENSGT00950000182943.kb.b.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966
Episquamata	ANCESTRAL SPECIES	12	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613.v	ENSGT00390000017613.u	ENSGT00390000009488	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657
Toxicofera	ANCESTRAL SPECIES	20	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d.a.b	ENSGT00950000182943.kb.b.a.a.d.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613.v	ENSGT00390000017613.u	ENSGT00390000009488	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657
Elapidae	ANCESTRAL SPECIES	15	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d.a.b	ENSGT00950000182943.kb.b.a.a.d.a.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038.g	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000009488	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657	ENSGT00500000044966	ENSGT01100000263551.a
Elapidae_a	ANCESTRAL SPECIES	42	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d.a.b	ENSGT00950000182943.kb.b.a.a.d.a.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00390000012138.a.b	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038.g	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000009488	ENSGT00390000017627.b.k	ENSGT00390000017627.b.l	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657
Acanthophiinae	ANCESTRAL SPECIES	54	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d.a.b	ENSGT00950000182943.kb.b.a.a.d.a.a.a	ENSGT00990000213324	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00390000012138.a.b	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038.g	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000009488	ENSGT00390000017627.b.k	ENSGT00390000017627.b.l	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657
Mainland tiger snake	MODERN SPECIES	37	LZTS1 (ENSNSUG00000002356)	ENSNSUG00000002359	ENSNSUG00000002361	ENSNSUG00000002363	ENSNSUG00000002365	ENSNSUG00000002367	OGDH (ENSNSUG00000002373) #15	ENSNSUG00000003325	ZMIZ2 (ENSNSUG00000003327) #14	ENSNSUG00000003331	ENSNSUG00000003332 #27	ENSNSUG00000003333	NUDCD3 (ENSNSUG00000003353) #19	CAMK2B (ENSNSUG00000003357) #20	YKT6 (ENSNSUG00000003384) #21	GCK (ENSNSUG00000003385) #22	ENSNSUG00000003390	MYL7 (ENSNSUG00000003392) #23	POLD2 (ENSNSUG00000003394) #24	AEBP1 (ENSNSUG00000003406) #25	CAPG (ENSNSUG00000003457)	ENSNSUG00000003461	ENSNSUG00000003481 #28	ENSNSUG00000003484 #28	TCF7L1 (ENSNSUG00000003494)	ENSNSUG00000003665	ELMOD3 (ENSNSUG00000003667)	FEZ1 (ENSNSUG00000003670)	PKNOX2 (ENSNSUG00000003671)	SLC37A2 (ENSNSUG00000003679)	HEPACAM (ENSNSUG00000004113)
Eastern brown snake	MODERN SPECIES	101	MAK16 (ENSPTXG00000010561)	SLC18A1 (ENSPTXG00000010560)	ATP6V1B2 (ENSPTXG00000010559)	LZTS1 (ENSPTXG00000010558)	ENSPTXG00000010557	ENSPTXG00000010556	ENSPTXG00000010555	ENSPTXG00000010554	OGDH (ENSPTXG00000010553) #15	ZMIZ2 (ENSPTXG00000010552) #14	ENSPTXG00000010551	ENSPTXG00000010550 #27	NUDCD3 (ENSPTXG00000010549) #19	CAMK2B (ENSPTXG00000010541) #20	YKT6 (ENSPTXG00000010537) #21	GCK (ENSPTXG00000010531) #22	MYL7 (ENSPTXG00000010530) #23	POLD2 (ENSPTXG00000010529) #24	AEBP1 (ENSPTXG00000010527) #25	CAPG (ENSPTXG00000010524)	ENSPTXG00000010521	DBNL (ENSPTXG00000010518) #28	TCF7L1 (ENSPTXG00000010517)	ENSPTXG00000010515	ENSPTXG00000010511	ELMOD3 (ENSPTXG00000010509)	ENSPTXG00000010507	PKNOX2 (ENSPTXG00000010506)	TMEM218 (ENSPTXG00000010505)	SLC37A2 (ENSPTXG00000010503)	HEPACAM (ENSPTXG00000010458)
Blue-lipped sea krait	MODERN SPECIES	9403																GCK (ENSLLTG00000011511) #22	ENSLLTG00000011534	MYL7 (ENSLLTG00000011544) #23
Indian cobra	MODERN SPECIES	7	RNF122 (ENSNNAG00000004587)	TTI2 (ENSNNAG00000004632)	MAK16 (ENSNNAG00000004656)	SLC18A1 (ENSNNAG00000004737)	ATP6V1B2 (ENSNNAG00000004869)	LZTS1 (ENSNNAG00000004911)	ENSNNAG00000004932	ENSNNAG00000004964	OGDH (ENSNNAG00000004998) #15	ZMIZ2 (ENSNNAG00000005151) #14	ENSNNAG00000005219	PGAM2 (ENSNNAG00000005235) #27	NUDCD3 (ENSNNAG00000005265) #19	CAMK2B (ENSNNAG00000005316) #20	YKT6 (ENSNNAG00000005418) #21	GCK (ENSNNAG00000005437) #22	ENSNNAG00000005486	MYL7 (ENSNNAG00000005496) #23	POLD2 (ENSNNAG00000005514) #24	AEBP1 (ENSNNAG00000005639) #25	CAPG (ENSNNAG00000006230)	ENSNNAG00000006283	DBNL (ENSNNAG00000006390) #28	TCF7L1 (ENSNNAG00000006454)	ENSNNAG00000006482	ENSNNAG00000006608	ELMOD3 (ENSNNAG00000006637)	FEZ1 (ENSNNAG00000006661)	PKNOX2 (ENSNNAG00000006698)	TMEM218 (ENSNNAG00000006731)	SLC37A2 (ENSNNAG00000006788)
Lizard	MODERN SPECIES	852	ENSACAG00000001497	ENSACAG00000040862	ENSACAG00000035425	ENSACAG00000038670	ENSACAG00000001501	ENSACAG00000044106	ENSACAG00000001508 #15	ENSACAG00000043480	ENSACAG00000001877 #14	ENSACAG00000002010 #27	ENSACAG00000039141	NUDCD3 (ENSACAG00000002043) #19	PPIA (ENSACAG00000036521) ##13	CAMK2B (ENSACAG00000012012) #20	YKT6 (ENSACAG00000011947) #21	GCK (ENSACAG00000011822) #22	MYL7 (ENSACAG00000043660) #23	ENSACAG00000043719	POLD2 (ENSACAG00000011710) #24	AEBP1 (ENSACAG00000022067) #25	ENSACAG00000011605	ENSACAG00000022415	ENSACAG00000011504 #28	ENSACAG00000011398	ENSACAG00000043703	ENSACAG00000011379	ENSACAG00000011330
Laterata	ANCESTRAL SPECIES	15	ENSGT00940000159152.d	ENSGT00390000003878	ENSGT00390000012859	ENSGT00940000159352	ENSGT00940000155068.b	ENSGT00940000154078.a.b	ENSGT00950000182943.kb.b.a.a.d	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613.v	ENSGT00390000017613.u	ENSGT00390000009488	ENSGT00390000017627.b	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000158657
Common wall lizard	MODERN SPECIES	6	ADGRA2 (ENSPMRG00000018224)	ENSPMRG00000018203	ENSPMRG00000018193	OGDH (ENSPMRG00000018166) #15	ENSPMRG00000018154	ENSPMRG00000018134	ENSPMRG00000018126	ZMIZ2 (ENSPMRG00000018113) #14	ENSPMRG00000018099 ##13	PGAM2 (ENSPMRG00000018089) #27	ENSPMRG00000018085	NUDCD3 (ENSPMRG00000018077) #19	ENSPMRG00000018072	CAMK2B (ENSPMRG00000017756) #20	YKT6 (ENSPMRG00000017605) #21	GCK (ENSPMRG00000017579) #22	MYL7 (ENSPMRG00000017569) #23	POLD2 (ENSPMRG00000017556) #24	AEBP1 (ENSPMRG00000017538) #25	CAPG (ENSPMRG00000017524)	ENSPMRG00000017517	ENSPMRG00000017512	DBNL (ENSPMRG00000017499) #28	TCF7L1 (ENSPMRG00000017473)	ENSPMRG00000017459	ENSPMRG00000017455	ENSPMRG00000017449	ENSPMRG00000017425	FEZ1 (ENSPMRG00000017327)	PKNOX2 (ENSPMRG00000017283)	ENSPMRG00000017276
Argentine black and white tegu	MODERN SPECIES	42	TMPRSS13 (ENSSMRG00000021861)	FXYD6 (ENSSMRG00000021860)	ENSSMRG00000021859	DSCAML1 (ENSSMRG00000021825)	CEP164 (ENSSMRG00000021823)	ENSSMRG00000021822	ENSSMRG00000021821	ENSSMRG00000021820	OGDH (ENSSMRG00000021819) #15	ZMIZ2 (ENSSMRG00000021818) #14	ENSSMRG00000021817 ##13	PGAM2 (ENSSMRG00000021816) #27	NUDCD3 (ENSSMRG00000021815) #19	CAMK2B (ENSSMRG00000021813) #20	YKT6 (ENSSMRG00000021811) #21	GCK (ENSSMRG00000021806) #22	MYL7 (ENSSMRG00000021804) #23	GOT1L1 (ENSSMRG00000021799)	ADRB3 (ENSSMRG00000021797)	ENSSMRG00000021763	EIF4EBP1 (ENSSMRG00000021761)	ENSSMRG00000021760	ASH2L (ENSSMRG00000021759)	STAR (ENSSMRG00000021757)	ENSSMRG00000021754	LSM1 (ENSSMRG00000021753)	BAG4 (ENSSMRG00000021751)	DDHD2 (ENSSMRG00000021748)	PLPP5 (ENSSMRG00000021747)	ENSSMRG00000021730	ENSSMRG00000021729
tuatara	MODERN SPECIES	704	ENSSPUG00000000811	TMED4 (ENSSPUG00000000791) #16	DDX56 (ENSSPUG00000000784) #17	NPC1L1 (ENSSPUG00000000641) #18	MRPS24 (ENSSPUG00000000628) #33	SLC20A1 (ENSSPUG00000000609)	NT5DC4 (ENSSPUG00000000379)	CKAP2L (ENSSPUG00000000352)	ENSSPUG00000000345	OGDH (ENSSPUG00000000282) #15	ENSSPUG00000000087 ##13	ENSSPUG00000000014 #27	NUDCD3 (ENSSPUG00000018880) #19	CAMK2B (ENSSPUG00000018871) #20	YKT6 (ENSSPUG00000018864) #21	GCK (ENSSPUG00000018858) #22	MYL7 (ENSSPUG00000018849) #23	POLD2 (ENSSPUG00000018846) #24	CAPG (ENSSPUG00000018830)
Archelosauria	ANCESTRAL SPECIES	29	ENSGT00940000159904 #18	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.jb	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Archosauria	ANCESTRAL SPECIES	38	ENSGT00950000182943.kb.b.a.b.b	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Aves	ANCESTRAL SPECIES	52						ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Neognathae	ANCESTRAL SPECIES	38						ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Neognathae_b	ANCESTRAL SPECIES	28						ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Passeriformes	ANCESTRAL SPECIES	26					ENSGT00940000158338	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000017613	ENSGT00390000009488	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183185.c.a.a
Great tit	MODERN SPECIES	14				ENSPMJG00000014840	ENSPMJG00000014841	ENSPMJG00000014842 ##13	ZMIZ2 (ENSPMJG00000014843) #14	OGDH (ENSPMJG00000014844) #15	ENSPMJG00000014845	CKAP2L (ENSPMJG00000014846)	NT5DC4 (ENSPMJG00000014847)	SLC20A1 (ENSPMJG00000014848)	NUDCD3 (ENSPMJG00000014850) #19	CAMK2B (ENSPMJG00000014851) #20	YKT6 (ENSPMJG00000015570) #21	GCK (ENSPMJG00000015571) #22	ENSPMJG00000015572	POLD2 (ENSPMJG00000015573) #24	AEBP1 (ENSPMJG00000015574) #25	DBNL (ENSPMJG00000015575) #28	TCF7L1 (ENSPMJG00000015576)	ENSPMJG00000015578	RETSAT (ENSPMJG00000015580)	ELMOD3 (ENSPMJG00000015581)	GPAT2 (ENSPMJG00000015583)	ENSPMJG00000015584	KCNIP3 (ENSPMJG00000015585)	COX5B (ENSPMJG00000015586)	H2AZ2 (ENSPMJG00000015588) #12	MAT2A (ENSPMJG00000015589)	GGCX (ENSPMJG00000015590)
Passeriformes_d	ANCESTRAL SPECIES	30					ENSGT00940000158338	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000017613	ENSGT00390000009488	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183185.c.a.a
Flycatcher	MODERN SPECIES	14						ENSFALG00000000046	ENSFALG00000000049 ##13	ENSFALG00000000050 #15	ENSFALG00000000051	ENSFALG00000024288	ENSFALG00000000052	SLC20A1 (ENSFALG00000000053)	NUDCD3 (ENSFALG00000000054) #19	CAMK2B (ENSFALG00000000055) #20	YKT6 (ENSFALG00000000056) #21	GCK (ENSFALG00000000058) #22	ENSFALG00000000061	POLD2 (ENSFALG00000000062) #24	DBNL (ENSFALG00000023549) #28	ENSFALG00000028262	ENSFALG00000000071	ENSFALG00000000073	RETSAT (ENSFALG00000000076)	ENSFALG00000000079	ENSFALG00000000084	ENSFALG00000000088	ENSFALG00000025377	ENSFALG00000000092	ENSFALG00000025335 #12	MAT2A (ENSFALG00000000100)	ENSFALG00000000106
Passeriformes_g	ANCESTRAL SPECIES	38					ENSGT00940000158338	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000017613	ENSGT00390000009488	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183185.c.a.a
Passeroidea	ANCESTRAL SPECIES	31					ENSGT00940000158338	ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000017613	ENSGT00390000009488	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b #11	ENSGT00900000140979.a.b #12	ENSGT00950000183185.c.a.a
Zebra finch	MODERN SPECIES	15							PPIA (ENSTGUG00000003254) ##13	ZMIZ2 (ENSTGUG00000003270) #14	OGDH (ENSTGUG00000003294) #15	ENSTGUG00000003368	ENSTGUG00000003384	NT5DC4 (ENSTGUG00000003390)	SLC20A1 (ENSTGUG00000003418)	NUDCD3 (ENSTGUG00000003442) #19	CAMK2B (ENSTGUG00000003464) #20	GCK (ENSTGUG00000003490) #22	YKT6 (ENSTGUG00000021816) #21	ENSTGUG00000019411	POLD2 (ENSTGUG00000003553) #24	DBNL (ENSTGUG00000003620) #28	TCF7L1 (ENSTGUG00000019696)	ENSTGUG00000029624	RETSAT (ENSTGUG00000003630)	ELMOD3 (ENSTGUG00000003650)	GPAT2 (ENSTGUG00000003661)	FAHD2A (ENSTGUG00000013905)	KCNIP3 (ENSTGUG00000028877)	COX5B (ENSTGUG00000029234)	PURB (ENSTGUG00000023488) #11	H2AFV (ENSTGUG00000015225) #12	GGCX (ENSTGUG00000025041)
Common canary	MODERN SPECIES	50				ENSSCAG00000015693	ENSSCAG00000015701 ##13	ZMIZ2 (ENSSCAG00000015712) #14	OGDH (ENSSCAG00000015724) #15	ENSSCAG00000015732	CKAP2L (ENSSCAG00000015737)	NT5DC4 (ENSSCAG00000015742)	SLC20A1 (ENSSCAG00000015753)	NUDCD3 (ENSSCAG00000015758) #19	ENSSCAG00000015761	CAMK2B (ENSSCAG00000015764) #20	YKT6 (ENSSCAG00000015766) #21	GCK (ENSSCAG00000015769) #22	ENSSCAG00000015772	POLD2 (ENSSCAG00000015775) #24	AEBP1 (ENSSCAG00000015779) #25	ENSSCAG00000015785 #28	ENSSCAG00000015788	RETSAT (ENSSCAG00000015795)	ENSSCAG00000015801	ENSSCAG00000015806	H2AZ2 (ENSSCAG00000015814) #12	MAT2A (ENSSCAG00000015818)	ENSSCAG00000015821	USP39 (ENSSCAG00000015826)	MXD1 (ENSSCAG00000015832)	SNRNP27 (ENSSCAG00000015840)	ADD2 (ENSSCAG00000015842)
Medium ground finch	MODERN SPECIES	365						ENSGFOG00000005995	ENSGFOG00000005988 ##13	OGDH (ENSGFOG00000005851) #15	ENSGFOG00000005840	ENSGFOG00000005833	NT5DC4 (ENSGFOG00000005754)	SLC20A1 (ENSGFOG00000005734)	NUDCD3 (ENSGFOG00000005669) #19	CAMK2B (ENSGFOG00000005652) #20	YKT6 (ENSGFOG00000005645) #21	GCK (ENSGFOG00000005637) #22	ENSGFOG00000005632	POLD2 (ENSGFOG00000005624) #24	AEBP1 (ENSGFOG00000005421) #25	ENSGFOG00000005385 #28	ENSGFOG00000005373 #28	ENSGFOG00000005364	ENSGFOG00000005359	RETSAT (ENSGFOG00000005350)	ENSGFOG00000005338	ENSGFOG00000005333	COX5B (ENSGFOG00000005328)	ENSGFOG00000005322 ##12	MAT2A (ENSGFOG00000005315)
Neognathae_c	ANCESTRAL SPECIES	30						ENSGT00950000183087.B ##13	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00950000182943.kb.a	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
Kakapo	MODERN SPECIES	14		ENSSHBG00005013430	ENSSHBG00005013443	ENSSHBG00005013460	ENSSHBG00005013470	ENSSHBG00005013491 ##13	ZMIZ2 (ENSSHBG00005013509) #14	OGDH (ENSSHBG00005013533) #15	ENSSHBG00005013563	CKAP2L (ENSSHBG00005013574)	NT5DC4 (ENSSHBG00005013588)	SLC20A1 (ENSSHBG00005013600)	NUDCD3 (ENSSHBG00005013613) #19	CAMK2B (ENSSHBG00005013625) #20	YKT6 (ENSSHBG00005013642) #21	GCK (ENSSHBG00005013652) #22	POLD2 (ENSSHBG00005013663) #24	AEBP1 (ENSSHBG00005013681) #25	CAPG (ENSSHBG00005013697)	DBNL (ENSSHBG00005013715) #28	TCF7L1 (ENSSHBG00005013731)	ENSSHBG00005013761	ENSSHBG00005013768	RETSAT (ENSSHBG00005013776)	ELMOD3 (ENSSHBG00005013787)	ADRA2B (ENSSHBG00005013795)	GPAT2 (ENSSHBG00005013804)	FAHD2A (ENSSHBG00005013814)	ENSSHBG00005013831	COX5B (ENSSHBG00005013836)	NPC1L1 (ENSSHBG00005013848) #18
Golden eagle	MODERN SPECIES	4					ENSACCG00020007312 ##13	ZMIZ2 (ENSACCG00020007269) #14	OGDH (ENSACCG00020007158) #15	ENSACCG00020007122	CKAP2L (ENSACCG00020007106)	NT5DC4 (ENSACCG00020007068)	SLC20A1 (ENSACCG00020007026)	ENSACCG00020007016	NUDCD3 (ENSACCG00020007001) #19	CAMK2B (ENSACCG00020006972) #20	YKT6 (ENSACCG00020006945) #21	GCK (ENSACCG00020006927) #22	MYL7 (ENSACCG00020006902) #23	ENSACCG00020006884	POLD2 (ENSACCG00020006852) #24	AEBP1 (ENSACCG00020006810) #25	CAPG (ENSACCG00020006778)	ENSACCG00020006766 #28	ENSACCG00020006749 #28	TCF7L1 (ENSACCG00020006717)	ENSACCG00020006691	ENSACCG00020006673	RETSAT (ENSACCG00020006645)	ELMOD3 (ENSACCG00020006624)	ADRA2B (ENSACCG00020006580)	ENSACCG00020006554	FAHD2A (ENSACCG00020006530)
Galloanserae	ANCESTRAL SPECIES	38						ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000161253	ENSGT00390000007636
Anatidae	ANCESTRAL SPECIES	172															ENSGT00390000015164.a #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417
Pink-footed goose	MODERN SPECIES	699															ENSABRG00000014874 #21	GCK (ENSABRG00000014872) #22
Duck	MODERN SPECIES	1935																GCK (ENSAPLG00000023543) #22	ENSAPLG00000029767
Phasianidae	ANCESTRAL SPECIES	33	ENSGT00940000160058	ENSGT00940000154909	ENSGT00940000159105	ENSGT00940000156575	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a.j #15	ENSGT00950000183125.b.a.a.i #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613.w.a	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00510000046985	ENSGT00390000006707	ENSGT00940000160058	ENSGT00940000154909	ENSGT00940000159105	ENSGT00940000156575	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.kb.a	ENSGT00950000183125.b.a.a.i #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00940000158444 #19	ENSGT00390000015164.b #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613.w.a	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571
Chicken	MODERN SPECIES	14	TGFA (ENSGALG00010018590)	LRRTM4 (ENSGALG00010020736)	ADRA1A (ENSGALG00010018356)	ENSGALG00010018371	SLC20A1 (ENSGALG00010018380)	NT5DC4 (ENSGALG00010018387)	ENSGALG00010018401	IL1B (ENSGALG00010018460)	OGDH (ENSGALG00010018519) #15	ZMIZ2 (ENSGALG00010018542) #14	PPIA (ENSGALG00010018554) ##13	ENSGALG00010018574	NUDCD3 (ENSGALG00010018611) #19	CAMK2B (ENSGALG00010018835)	YKT6 (ENSGALG00010018951) #21	GCK (ENSGALG00010018990) #22	GNLY (ENSGALG00010019027)	POLD2 (ENSGALG00010019049) #24	AEBP1 (ENSGALG00010019072) #25	CAPG (ENSGALG00010019079)	DBNL (ENSGALG00010019115) #28	TCF7L1 (ENSGALG00010020180)	ENSGALG00010020071	CASP14 (ENSGALG00010020089)	RETSAT (ENSGALG00010020097)	ADRA2B (ENSGALG00010020111)	ENSGALG00010020123	FAHD2A (ENSGALG00010020149)	ENSGALG00010020158
Turkey	MODERN SPECIES	981															ENSMGAG00000019903 #21	ENSMGAG00000017169 #22
Japanese quail	MODERN SPECIES	14	SNRPG (ENSCJPG00005011731)	FAM136A (ENSCJPG00005011730)	TGFA (ENSCJPG00005011729)	LRRTM4 (ENSCJPG00005011728)	ADRA1A (ENSCJPG00005011726)	ANXA4 (ENSCJPG00005011724)	SLC20A1 (ENSCJPG00005011723)	NT5DC4 (ENSCJPG00005011666)	ENSCJPG00005011663	ENSCJPG00005011657	OGDH (ENSCJPG00005011649) #15	ENSCJPG00005011631 ##13	NUDCD3 (ENSCJPG00005011630) #19	CAMK2B (ENSCJPG00005011629) #20	YKT6 (ENSCJPG00005011626) #21	GCK (ENSCJPG00005011620) #22	ENSCJPG00005011619	POLD2 (ENSCJPG00005011618) #24	AEBP1 (ENSCJPG00005011617) #25	DBNL (ENSCJPG00005011478) #28	TCF7L1 (ENSCJPG00005011477)	ENSCJPG00005011476	RETSAT (ENSCJPG00005011470)	ELMOD3 (ENSCJPG00005011469)	ADRA2B (ENSCJPG00005011466)	GPAT2 (ENSCJPG00005011464)	FAHD2A (ENSCJPG00005011462)
African ostrich	MODERN SPECIES	863																GCK (ENSSCUG00000014547) #22	POLD2 (ENSSCUG00000014545) #24	AEBP1 (ENSSCUG00000014544) #25	CAPG (ENSSCUG00000014541)	DBNL (ENSSCUG00000014539) #28	ENSSCUG00000014538	ENSSCUG00000014536	ELMOD3 (ENSSCUG00000014534)	GPAT2 (ENSSCUG00000014529)	H2AZ2 (ENSSCUG00000014524) #12	MAT2A (ENSSCUG00000014523)	ENSSCUG00000014520	ENSSCUG00000014516	USP39 (ENSSCUG00000014513)
Cryptodira	ANCESTRAL SPECIES	30	ENSGT00390000011179 #33	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00530000063691.a	ENSGT00950000182943.jb	ENSGT00950000182943.kb.a	ENSGT00950000182943.kb.b.a.a.a	ENSGT00950000183125.b.a.a #15	ENSGT01030000234539.b.b.a #14	ENSGT00950000183087.B ##13	ENSGT00950000182926.b.c #27	ENSGT00940000166166	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00530000063586.a	ENSGT00940000156590
Testudinoidea	ANCESTRAL SPECIES		ENSGT01070000253744.b.a.a.b	ENSGT00960000189547	ENSGT00940000161253	ENSGT00940000162540.b	ENSGT00390000004149	ENSGT01050000244827.D.b.a	ENSGT00940000154966	ENSGT00940000158670	ENSGT00390000005154	ENSGT00940000157856	ENSGT00940000161605	ENSGT00940000154856.A.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417.a	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00940000156590	ENSGT00940000155847
Testudinidae	ANCESTRAL SPECIES	31	ENSGT00940000153322.A	ENSGT00390000007636	ENSGT00940000161253	ENSGT00940000162540.b	ENSGT00390000004149	ENSGT01050000244827.D.b.a	ENSGT00940000154966	ENSGT00940000158670	ENSGT00390000005154	ENSGT00940000157856	ENSGT00940000161605	ENSGT00940000154856.A.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417.a	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782	ENSGT00940000155847	ENSGT00940000153710.a
Goode s thornscrub tortoise	MODERN SPECIES	11	ARID5A (ENSGEVG00005002130)	NEURL3 (ENSGEVG00005002144)	NCAPH (ENSGEVG00005002156)	ITPRIPL1 (ENSGEVG00005002174)	ENSGEVG00005002185	SNRNP200 (ENSGEVG00005002225)	CIAO1 (ENSGEVG00005002337)	TMEM127 (ENSGEVG00005002344)	ENSGEVG00005002354	STARD7 (ENSGEVG00005002364)	DUSP2 (ENSGEVG00005002377)	ASTL (ENSGEVG00005002388)	NUDCD3 (ENSGEVG00005002408) #19	CAMK2B (ENSGEVG00005002455) #20	YKT6 (ENSGEVG00005002508) #21	GCK (ENSGEVG00005002523) #22	MYL7 (ENSGEVG00005002543) #23	ENSGEVG00005002551	POLD2 (ENSGEVG00005002560) #24	ENSGEVG00005002568 #25	CAPG (ENSGEVG00005002579)	ENSGEVG00005002602	DBNL (ENSGEVG00005002636) #28	TCF7L1 (ENSGEVG00005002652)	ENSGEVG00005002664	ENSGEVG00005002678	ELMOD3 (ENSGEVG00005005152)	RETSAT (ENSGEVG00005005186)	ADRA2B (ENSGEVG00005005225)	GPAT2 (ENSGEVG00005005258)	FAHD2A (ENSGEVG00005005308)
Abingdon island giant tortoise	MODERN SPECIES	191				NEURL3 (ENSCABG00000020802)	NCAPH (ENSCABG00000020797)	ITPRIPL1 (ENSCABG00000020794)	ENSCABG00000020792	SNRNP200 (ENSCABG00000020216)	CIAO1 (ENSCABG00000020203)	TMEM127 (ENSCABG00000020201)	STARD7 (ENSCABG00000020188)	DUSP2 (ENSCABG00000020177)	NUDCD3 (ENSCABG00000020163) #19	CAMK2B (ENSCABG00000020119) #20	YKT6 (ENSCABG00000020104) #21	GCK (ENSCABG00000020100) #22	MYL7 (ENSCABG00000020098) #23	POLD2 (ENSCABG00000020088) #24	ENSCABG00000020085 #25
Emydidae	ANCESTRAL SPECIES		ENSGT01070000253744.b.a.a.b	ENSGT00960000189547	ENSGT00940000161253	ENSGT00940000162540.a	ENSGT00390000004149	ENSGT01050000244827.D.b.a	ENSGT00940000154966	ENSGT00940000158670	ENSGT00390000005154	ENSGT00940000157856	ENSGT00940000161605	ENSGT00940000154856.A.a	ENSGT00940000158444 #19	ENSGT00940000158973.b #20	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00610000087417.a	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00940000159305	ENSGT00940000156732 #28	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00390000009488	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000158782
painted turtle	MODERN SPECIES	2369													NUDCD3 (ENSCPBG00000001143) #19	CAMK2B (ENSCPBG00000001182) #20	YKT6 (ENSCPBG00000001250) #21	GCK (ENSCPBG00000001267) #22	MYL7 (ENSCPBG00000001354) #23	ENSCPBG00000001364	POLD2 (ENSCPBG00000001376) #24	AEBP1 (ENSCPBG00000001383) #25	CAPG (ENSCPBG00000001419)	ENSCPBG00000001432	DBNL (ENSCPBG00000001465) #28	TCF7L1 (ENSCPBG00000001484)
Three-toed box turtle	MODERN SPECIES	20														CAMK2B (ENSTMTG00000002870) #20	YKT6 (ENSTMTG00000002894) #21	GCK (ENSTMTG00000002903) #22	MYL7 (ENSTMTG00000002919) #23	ENSTMTG00000002933	POLD2 (ENSTMTG00000002938) #24	AEBP1 (ENSTMTG00000002986) #25	CAPG (ENSTMTG00000004000)	ENSTMTG00000004019	DBNL (ENSTMTG00000004052) #28	TCF7L1 (ENSTMTG00000004090)	ENSTMTG00000004122	ENSTMTG00000004129	RETSAT (ENSTMTG00000004139)	ELMOD3 (ENSTMTG00000004164)	ADRA2B (ENSTMTG00000004188)	GPAT2 (ENSTMTG00000004201)	FAHD2A (ENSTMTG00000004243)
Chinese turtle	MODERN SPECIES	1258															YKT6 (ENSPSIG00000007883) #21	GCK (ENSPSIG00000007130) #22	MYL7 (ENSPSIG00000007104) #23	ENSPSIG00000007063	POLD2 (ENSPSIG00000006691) #24
Anura	ANCESTRAL SPECIES	30	ENSGT00530000063691.a	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00390000011179 #33	ENSGT00940000158973.b #20	ENSGT00940000158444 #19	ENSGT00940000166166	ENSGT00950000182926.b.c #27	ENSGT00940000156008.pb.a	ENSGT01030000234539.b.b.a #14	ENSGT00950000183125.b.a.a #15	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488	ENSGT00940000156732 #28	ENSGT00940000160915 #30	ENSGT00940000157038	ENSGT00530000064712	ENSGT00940000164699	ENSGT00390000017613	ENSGT00940000153710.a	ENSGT00940000164380.a	ENSGT00390000003458	ENSGT00940000159875	ENSGT00390000000134.b
Leishan spiny toad	MODERN SPECIES	6	MRPS24 (ENSLLEG00000005619) #33	CAMK2B (ENSLLEG00000005795) #20	ENSLLEG00000007205	NUDCD3 (ENSLLEG00000007221) #19	ENSLLEG00000007253	ENSLLEG00000007270 #27	ENSLLEG00000007351	ENSLLEG00000007377	ZMIZ2 (ENSLLEG00000007415) #14	OGDH (ENSLLEG00000007575) #15	TMED4 (ENSLLEG00000007933) #16	DDX56 (ENSLLEG00000008007) #17	NPC1L1 (ENSLLEG00000008095) #18	ENSLLEG00000008282	YKT6 (ENSLLEG00000008362) #21	GCK (ENSLLEG00000008634) #22	MYL7 (ENSLLEG00000008812) #23	POLD2 (ENSLLEG00000008939) #24	AEBP1 (ENSLLEG00000009211) #25	ENSLLEG00000009398	ELMOD3 (ENSLLEG00000009456)	ENSLLEG00000009609	ENSLLEG00000009627	DBNL (ENSLLEG00000009685) #28	TCF7L1 (ENSLLEG00000010119)	ENSLLEG00000010303	ENSLLEG00000010359	ENSLLEG00000010475	ENSLLEG00000011185	ENSLLEG00000011203	ENSLLEG00000011239
Frog	MODERN SPECIES	3	nt5dc4 (ENSXETG00000018955)	slc20a1 (ENSXETG00000018957)	mrps24 (ENSXETG00000018967) #33	camk2b (ENSXETG00000018971) #20	nudcd3 (ENSXETG00000018972) #19	ENSXETG00000039060	pgam2 (ENSXETG00000018980) #27	ENSXETG00000036135	ppia (ENSXETG00000018981)	zmiz2 (ENSXETG00000018991) #14	ogdh (ENSXETG00000018997) #15	tmed4 (ENSXETG00000018999) #16	ddx56 (ENSXETG00000019000) #17	npc1l1 (ENSXETG00000019001) #18	ykt6 (ENSXETG00000019002) #21	gck (ENSXETG00000019003) #22	myl7 (ENSXETG00000019004) #23	spata18a (ENSXETG00000019005)	kcnk5 (ENSXETG00000019007) #24	aebp1 (ENSXETG00000032698) #25	elmod3 (ENSXETG00000019012)	dbnl (ENSXETG00000019013) #28	ube2d4 (ENSXETG00000019014) #30	tcf7l1 (ENSXETG00000019015)	tgoln2 (ENSXETG00000039705)	XB5812047 [provisional:casp7] (ENSXETG00000019016)	retsat (ENSXETG00000007784)	stambp (ENSXETG00000007783)	ido1 (ENSXETG00000039794)	tcim (ENSXETG00000007782)	golga7 (ENSXETG00000035723)
Coelacanth	MODERN SPECIES	565											ENSLACG00000001852	ENSLACG00000005301	ENSLACG00000005621	ELMOD3 (ENSLACG00000007113)	ENSLACG00000012421 #25	GCK (ENSLACG00000012891) #22	MYL7 (ENSLACG00000013343) #23	POLD2 (ENSLACG00000013577) #24	YKT6 (ENSLACG00000014121) #21	NPC1L1 (ENSLACG00000022620) #18	DDX56 (ENSLACG00000015551) #17	TMED4 (ENSLACG00000015900) #16	marchf5l (ENSLACG00000016018)	actr1b (ENSLACG00000016106)
Actinopterygii	ANCESTRAL SPECIES	146					ENSGT00390000014909	ENSGT00940000157856	ENSGT00390000005154	ENSGT00940000158670	ENSGT00940000154966	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488	ENSGT00390000010474	ENSGT00940000155477	ENSGT00940000164321	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107	ENSGT00940000159152.d	ENSGT00940000159152.c.b	ENSGT00490000043388.a	ENSGT00390000012859	ENSGT00390000003878
Neopterygii	ANCESTRAL SPECIES	162					ENSGT00390000014909	ENSGT00940000157856	ENSGT00390000005154	ENSGT00940000158670	ENSGT00940000154966	ENSGT00390000014879.c.a	ENSGT00940000162631	ENSGT00940000159012 #16	ENSGT00550000074946 #17	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323 #25	ENSGT00390000009488	ENSGT00390000010474	ENSGT00940000155477	ENSGT00940000164321	ENSGT00730000111133	ENSGT00940000158936	ENSGT00940000158107	ENSGT00490000043388.a	ENSGT00940000159152.d	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159352
Osteoglossocephalai	ANCESTRAL SPECIES	221	ENSGT00950000183167.a.b.b.a	ENSGT00940000156818	ENSGT00530000064873.a	ENSGT00530000064873.b	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000161605	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323.h #25	ENSGT00390000009488
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	183	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00390000000134.b.b	ENSGT00530000063711.a.m	ENSGT00940000155874.b	ENSGT00950000183167.a.b.b.a.a	ENSGT00940000156818	ENSGT00530000064873.a	ENSGT00940000158546	ENSGT00950000182953.C.c.h	ENSGT00940000158782.a	ENSGT00940000154856.B.c	ENSGT00530000063672.b	ENSGT00550000074946 #17	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b.c #22	ENSGT00940000158323.g #25	ENSGT00940000166967	ENSGT00390000010474	ENSGT00940000155477	ENSGT00940000164321.b	ENSGT00730000111133.p	ENSGT00940000158107.a.a	ENSGT00940000159152.d	ENSGT00940000165894.b	ENSGT01030000234539.b.b.a.i.a #14	ENSGT00390000003652.d	ENSGT00950000183125.b.a.a.a.a.a #15	ENSGT00940000158973.a.a ##20	ENSGT00940000158444 #19	ENSGT00940000165439.e
Asian bonytongue	MODERN SPECIES	21	TACC1 (ENSSFOG00015013410)	NSD3 (ENSSFOG00015013215)	ENSSFOG00015013186	ENSSFOG00015013030	ENSSFOG00015030972	ENSSFOG00015013005	rassf2b (ENSSFOG00015032458)	ENSSFOG00015033083	ENSSFOG00015012940	pcna (ENSSFOG00015012918)	ADRA2B (ENSSFOG00015012907)	ENSSFOG00015012876	ENSSFOG00015012855	ddx56 (ENSSFOG00015012795) #17	ykt6 (ENSSFOG00015027849) #21	gck (ENSSFOG00015012730) #22	aebp1a (ENSSFOG00015012710) #25	pnx (ENSSFOG00015012702)	star (ENSSFOG00015012680)	ENSSFOG00015012646	DUSP26 (ENSSFOG00015031499)	RNF122 (ENSSFOG00015012575)	ppiab (ENSSFOG00015032921)	ZMIZ2 (ENSSFOG00015012436) #14	ENSSFOG00015012401	OGDH (ENSSFOG00015012257) #15	ENSSFOG00015012032	nudcd3 (ENSSFOG00015011973) #19	gnsb (ENSSFOG00015011901)	polm (ENSSFOG00015011814) #26	ved (ENSSFOG00015011802)
P. kingsleyae	MODERN SPECIES	419							ENSPKIG00000018551	rassf2b (ENSPKIG00000018574)	SLC23A2 (ENSPKIG00000018659)	ENSPKIG00000018799	pcna (ENSPKIG00000018884)	ENSPKIG00000018919	ENSPKIG00000018955	ddx56 (ENSPKIG00000018998) #17	ykt6 (ENSPKIG00000019067) #21	gck (ENSPKIG00000019104) #22	aebp1a (ENSPKIG00000019140) #25	pnx (ENSPKIG00000019204)	ash2l (ENSPKIG00000019252)	star (ENSPKIG00000019350)	ENSPKIG00000019382	lsm1 (ENSPKIG00000019409)	DUSP26 (ENSPKIG00000019436)	RNF122 (ENSPKIG00000019461)	ENSPKIG00000019479	ZMIZ2 (ENSPKIG00000019511) #14
Osteoglossiformes	ANCESTRAL SPECIES	19	ENSGT00940000156808	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a.b	ENSGT00530000064873.b	ENSGT00990000212267	ENSGT00950000182953.C.c.g	ENSGT00940000158782.b	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000161605	ENSGT00940000159904 #18	ENSGT00950000182787.E.d.e.b.d #22	ENSGT00940000161682 #23	ENSGT00390000006780 #24	ENSGT00940000158323.h #25	ENSGT00390000009488	ENSGT00940000164321.a	ENSGT00730000111133.o	ENSGT00940000158936	ENSGT00940000158107.a.b	ENSGT00490000043388.a	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159352	ENSGT00940000177802	ENSGT00940000165894.a	ENSGT01030000234539.b.b.a.i.b #14
Asian bonytongue	MODERN SPECIES	3	NSD3 (ENSSFOG00015020197)	LETM2 (ENSSFOG00015020155)	prnprs3 (ENSSFOG00015024331)	ENSSFOG00015026969	rassf2a (ENSSFOG00015027258)	SLC23A2 (ENSSFOG00015032864)	kcnip3b (ENSSFOG00015029858)	PCNA (ENSSFOG00015020064)	zgc:152830 (ENSSFOG00015020026)	fahd2a (ENSSFOG00015019987)	gpat2 (ENSSFOG00015019885)	adra2b (ENSSFOG00015032553)	dusp2 (ENSSFOG00015019842)	NPC1L1 (ENSSFOG00015019816) #18	YKT6 (ENSSFOG00015019785) #21	gck (ENSSFOG00015019756) #22	myl7 (ENSSFOG00015019740) #23	pold2 (ENSSFOG00015019712) #24	AEBP1 (ENSSFOG00015019686) #25	ELMOD3 (ENSSFOG00015019673)	ash2l (ENSSFOG00015019577)	ENSSFOG00015019540	lsm1 (ENSSFOG00015019528)	bag4 (ENSSFOG00015030493)	DUSP26 (ENSSFOG00015031742)	ENSSFOG00015019505	RNF122 (ENSSFOG00015029745)	mak16 (ENSSFOG00015019462)	TTI2 (ENSSFOG00015019436)	SLC18A1 (ENSSFOG00015019408)	ENSSFOG00015026446
Clupeocephala	ANCESTRAL SPECIES	224	ENSGT00650000094724	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23
Otomorpha	ANCESTRAL SPECIES	483								ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000159904 #18	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22
Clupeiformes	ANCESTRAL SPECIES	500									ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00940000161605	ENSGT00940000159904 #18	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22
Atlantic herring	MODERN SPECIES	23	kctd9a (ENSCHAG00000016250)	npy8br (ENSCHAG00000016242)	KLHL22 (ENSCHAG00000016230)	tbx16 (ENSCHAG00000016138)	CABIN1 (ENSCHAG00000015888)	ddx51 (ENSCHAG00000015605)	zgc:152830 (ENSCHAG00000015420)	FAHD2A (ENSCHAG00000015404)	gpat2 (ENSCHAG00000015126)	adra2b (ENSCHAG00000015103)	dusp2 (ENSCHAG00000015093)	NPC1L1 (ENSCHAG00000012912) #18	ENSCHAG00000012789	ENSCHAG00000012754	myl7 (ENSCHAG00000012672) #23	gck (ENSCHAG00000012544) #22	YKT6 (ENSCHAG00000012522) #21	ENSCHAG00000012489	ENSCHAG00000012483	ENSCHAG00000012440	ENSCHAG00000012422	ENSCHAG00000012402	ENSCHAG00000012393	ENSCHAG00000012366	MMP11 (ENSCHAG00000012170)	ENSCHAG00000012145	ENSCHAG00000012138	ENSCHAG00000012131	ENSCHAG00000012093	ENSCHAG00000011897	ENSCHAG00000011870
Denticle herring	MODERN SPECIES	2	smyd1b (ENSDCDG00000028951)	fabp1b.1 (ENSDCDG00000028945)	ENSDCDG00000028944	ENSDCDG00000028942	si:ch211-170d8.2 (ENSDCDG00000028941)	hps4 (ENSDCDG00000028934)	cox6a1 (ENSDCDG00000028920)	KCNIP3 (ENSDCDG00000028898)	piwil1 (ENSDCDG00000028891)	ENSDCDG00000028882	TMEM132C (ENSDCDG00000028877)	slc15a4 (ENSDCDG00000028870)	GLT1D1 (ENSDCDG00000028864)	TMEM132D (ENSDCDG00000028859)	fzd10 (ENSDCDG00000028855)	gck (ENSDCDG00000028620) #22	gc (ENSDCDG00000028587)	slc4a4a (ENSDCDG00000028125)	mob1ba (ENSDCDG00000028072)	GRSF1 (ENSDCDG00000028062)	rufy3 (ENSDCDG00000027088)	ENSDCDG00000027050	cxcl11.1 (ENSDCDG00000027047)	cxcl11.1 (ENSDCDG00000027033)	cxcl11.1 (ENSDCDG00000027014)	ENSDCDG00000027012	ENSDCDG00000027001	ENSDCDG00000026999	HAPLN1 (ENSDCDG00000026996)	EDIL3 (ENSDCDG00000026815)	cox7c (ENSDCDG00000026796)
Otophysi	ANCESTRAL SPECIES	322										ENSGT00940000154575.a.a	ENSGT00530000063474.B.e.a	ENSGT00940000162972.e.b	ENSGT01050000244888.b.b.a.b.c	ENSGT00940000157386.a	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000159904 #18	ENSGT00940000169964	ENSGT00940000161605	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00530000063255.C
Characiphysae	ANCESTRAL SPECIES	96	ENSGT00940000159022	ENSGT00940000154764	ENSGT00940000156664.d	ENSGT00940000159783.g.a	ENSGT00950000183203.c.b	ENSGT01030000234627.a.b.a.b.a	ENSGT00950000183200.A.a.b.b	ENSGT00940000161861	ENSGT01100000263475.f.a.f.b.a	ENSGT00940000154575.a.a	ENSGT00530000063474.B.e.a	ENSGT00940000162972.e.b	ENSGT01050000244888.b.b.a.b.c	ENSGT00940000157386.a	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000159904 #18	ENSGT00940000169964	ENSGT00940000161605	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00530000063255.C
Channel catfish	MODERN SPECIES	24	tcf7l1b (ENSIPUG00000003707)	ENSIPUG00000003728	stambp (ENSIPUG00000003740)	ENSIPUG00000003771	ccn1l2 (ENSIPUG00000003879)	ENSIPUG00000003903	ENSIPUG00000003912	fzd10 (ENSIPUG00000003951)	MR1 (ENSIPUG00000003966)	ENSIPUG00000003992	ENSIPUG00000003997	ENSIPUG00000004010	aplnr (ENSIPUG00000004015)	TBC1D10A (ENSIPUG00000004024)	Myl7 (ENSIPUG00000004044) #23	gck (ENSIPUG00000004068) #22	npc1l1 (ENSIPUG00000004087) #18	izumo1 (ENSIPUG00000004120)	Dusp2 (ENSIPUG00000004137)	adra2b (ENSIPUG00000004154)	gpat2 (ENSIPUG00000004176)	stx2 (ENSIPUG00000004281)	RIMBP2 (ENSIPUG00000004325)	ADGRD1 (ENSIPUG00000004394)	ulk1a (ENSIPUG00000004487)	EP400 (ENSIPUG00000004570)	ncor2 (ENSIPUG00000004773)	ENSIPUG00000005198	FAM101A (ENSIPUG00000005212)	ccdc92 (ENSIPUG00000005220)	rassf2a (ENSIPUG00000005234)
Characiphysae_b	ANCESTRAL SPECIES	104	ENSGT00940000159022	ENSGT00940000154764	ENSGT00940000156664.d	ENSGT00940000159783.g.a	ENSGT00950000183203.c.b	ENSGT01030000234627.a.b.a.b.a	ENSGT00950000183200.A.a.b.b	ENSGT00940000161861	ENSGT01100000263475.f.a.f.b.a	ENSGT00940000154575.a.a	ENSGT00530000063474.B.e.a	ENSGT00940000162972.e.b	ENSGT01050000244888.b.b.a.b.c	ENSGT00940000157386.a	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000159904 #18	ENSGT00940000169964	ENSGT00940000161605	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00530000063255.C
Characoidei	ANCESTRAL SPECIES	143	ENSGT00940000159022	ENSGT00940000154764	ENSGT00940000156664.d	ENSGT00940000159783.g.a	ENSGT00950000183203.c.b	ENSGT01030000234627.a.b.a.b.a	ENSGT00950000183200.A.a.b.b	ENSGT00940000161861	ENSGT01100000263475.f.a.f.b.a	ENSGT00940000154575.a.a	ENSGT00530000063474.B.e.a	ENSGT00940000162972.e.b	ENSGT01050000244888.b.b.a.b.c	ENSGT00940000157386.a	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000159904 #18	ENSGT00940000169964	ENSGT00940000161605	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00530000063255.C
Red-bellied piranha	MODERN SPECIES	365																gck (ENSPNAG00000018873) #22	YKT6 (ENSPNAG00000018811) #21	NPC1L1 (ENSPNAG00000018789) #18	dusp2 (ENSPNAG00000018772)	adra2b (ENSPNAG00000018765)	gpat2 (ENSPNAG00000018745)	FAHD2A (ENSPNAG00000018693)	zgc:152830 (ENSPNAG00000018656)	ENSPNAG00000018595	ENSPNAG00000018549	RNF122 (ENSPNAG00000018528)	ENSPNAG00000018492	ENSPNAG00000018475	nr6a1a (ENSPNAG00000018454)	ENSPNAG00000018424
Mexicana tetra	MODERN SPECIES	21	ncor2 (ENSAMXG00000019886)	EP400 (ENSAMXG00000000356)	ulk1a (ENSAMXG00000000370)	ADGRD1 (ENSAMXG00000029176)	RIMBP2 (ENSAMXG00000000393)	ENSAMXG00000035895	ENSAMXG00000029296	piwil1 (ENSAMXG00000015370)	fzd10 (ENSAMXG00000015445)	ENSAMXG00000015469	ENSAMXG00000033747	hpdb (ENSAMXG00000015502)	aplnra (ENSAMXG00000024834)	TBC1D10A (ENSAMXG00000038599)	myl7 (ENSAMXG00000015566) #23	gck (ENSAMXG00000034250) #22	YKT6 (ENSAMXG00000038981) #21	NPC1L1 (ENSAMXG00000009702) #18	ENSAMXG00000036421	dusp2 (ENSAMXG00000043215)	adra2b (ENSAMXG00000037029)	nr6a1a (ENSAMXG00000039712)	nr5a1a (ENSAMXG00000005494)	ADGRD2 (ENSAMXG00000005477)	fgf17 (ENSAMXG00000042469)	ENSAMXG00000040542	bcl2l16 (ENSAMXG00000030617)	ENSAMXG00000040491	ccn1l2 (ENSAMXG00000005447)	ENSAMXG00000035935	FKBP15 (ENSAMXG00000005437)
Electric eel	MODERN SPECIES	663									ENSEEEG00000023388	ENSEEEG00000023389	hpdb (ENSEEEG00000023390)	ENSEEEG00000023391	aplnra (ENSEEEG00000023392)	TBC1D10A (ENSEEEG00000023394)	myl7 (ENSEEEG00000023396) #23	gck (ENSEEEG00000023397) #22	YKT6 (ENSEEEG00000023409) #21	NPC1L1 (ENSEEEG00000023422) #18	dusp2 (ENSEEEG00000023450)	adra2b (ENSEEEG00000023452)	ENSEEEG00000023453
Cyprinoidei	ANCESTRAL SPECIES	47	ENSGT00390000014595.b.b	ENSGT00390000016504	ENSGT00940000158555.a.a	ENSGT00940000159252.b.a	ENSGT00940000155794.h	ENSGT00940000154601.h.b.c	ENSGT00940000164235.a	ENSGT00940000159371	ENSGT00390000018674	ENSGT00390000012719.b.b	ENSGT00940000154717.pc.b	ENSGT00390000015354.d.a.a	ENSGT01050000244888.b.b.a.b.c	ENSGT00940000157386.a	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000159904 #18	ENSGT00940000169964	ENSGT00940000161605	ENSGT00940000161915	ENSGT00520000055570.A.b	ENSGT00940000160571	ENSGT00940000166311	ENSGT00530000063255.C	ENSGT00390000001731	ENSGT00390000012331	ENSGT00940000157194.c	ENSGT00940000158501.d.b	ENSGT00940000153772.B	ENSGT00940000165424.a.b.b	ENSGT01060000253314
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	234	ENSGT00390000010771	ENSGT00390000014595.b.b.h	ENSGT00390000016504.f	ENSGT00940000158555.a.a.a	ENSGT00940000159252.b.a.c	ENSGT00940000155794.h.c	ENSGT00940000154601.h.b.c.a	ENSGT00940000164235.a.d	ENSGT00940000159371	ENSGT00390000018674	ENSGT00390000012719.b.b.b	ENSGT00940000154717.pc.b.h	ENSGT00390000015354.d.a.a.d	ENSGT01050000244888.b.b.a.b.c.e	ENSGT00940000157386.a.g	ENSGT00950000182787.E.d.e.b.e #22	ENSGT00940000159904.b #18	ENSGT00940000169964.a	ENSGT00940000161605.e.b	ENSGT00940000161915.d.a	ENSGT00520000055570.A.b.m	ENSGT00940000160571	ENSGT00530000063255.C.e	ENSGT00390000001731.f	ENSGT00940000157194.c.c	ENSGT00940000158501.d.b	ENSGT00940000153772.B.i	ENSGT00940000165424.a.b.b.f.a	ENSGT01060000253314	ENSGT00940000154702.a.a.c.b	ENSGT00940000159361.e
Cyprininae_a	ANCESTRAL SPECIES	169	ENSGT00390000014595.b.b.h	ENSGT00390000016504.f	ENSGT00940000158555.a.a.a	ENSGT00940000159252.b.a.c	ENSGT00940000155794.h.c	ENSGT00940000154601.h.b.c.a	ENSGT00940000164235.a.d	ENSGT00940000159371	ENSGT00390000018674	ENSGT00390000012719.b.b.b	ENSGT00940000154717.pc.b.h	ENSGT00390000015354.d.a.a.d	ENSGT01050000244888.b.b.a.b.c.e	ENSGT00940000157386.a.g	ENSGT00940000161682.f #23	ENSGT00950000182787.E.d.e.b.e #22	ENSGT00940000159904.b #18	ENSGT00940000169964.a	ENSGT00940000161605.e.b	ENSGT00940000161915.d.a	ENSGT00520000055570.A.b.m	ENSGT00940000166311.b	ENSGT00530000063255.C.e	ENSGT00390000001731.f	ENSGT00940000157194.c.c	ENSGT00940000158501.d.b.a	ENSGT00940000153772.B.i	ENSGT00940000165424.a.b.b.e	ENSGT00940000154702.a.a.c.b	ENSGT00940000159361.e	ENSGT00390000016790.h
Common carp reference	MODERN SPECIES	17	zgc:162025 (ENSCCRG00000080682)	ENSCCRG00000074478	unc119.1 (ENSCCRG00000072890)	cabp1a (ENSCCRG00000075000)	asphd2 (ENSCCRG00000007205)	ggt5a (ENSCCRG00000053549)	ggt1a (ENSCCRG00000059363)	ENSCCRG00000011671	gpx8 (ENSCCRG00000074184)	anapc5 (ENSCCRG00000005721)	rnf34a (ENSCCRG00000015555)	kdm2ba (ENSCCRG00000009231)	ORAI1 (ENSCCRG00000009235)	aplnra (ENSCCRG00000071738)	ENSCCRG00000053275	gck (ENSCCRG00000064491) #22	ENSCCRG00000021644 #18	ENSCCRG00000057074	dusp2 (ENSCCRG00000034538)	adra2b (ENSCCRG00000076304)	gpat2 (ENSCCRG00000069549)	fahd2a (ENSCCRG00000061737)	zgc:152830 (ENSCCRG00000019681)	rnf10 (ENSCCRG00000019827)	olfml2a (ENSCCRG00000019757)	golga1 (ENSCCRG00000019692)	arpc5la (ENSCCRG00000019736)	ENSCCRG00000019687	ENSCCRG00000056026	ENSCCRG00000077578	ENSCCRG00000079392
Golden-line barbel	MODERN SPECIES	500	unc119.1 (ENSSGRG00000021838)	mlec (ENSSGRG00000021837)	cabp1a (ENSSGRG00000021836)	asphd2 (ENSSGRG00000021834)	ggt5a (ENSSGRG00000021829)	ggt1a (ENSSGRG00000021677)	ENSSGRG00000021668	gpx8 (ENSSGRG00000021665)	anapc5 (ENSSGRG00000021308)	rnf34a (ENSSGRG00000021295)	ORAI1 (ENSSGRG00000021293)	kdm2ba (ENSSGRG00000021291)	aplnra (ENSSGRG00000021290)	TBC1D10A (ENSSGRG00000021289)	myl7 (ENSSGRG00000021285) #23	gck (ENSSGRG00000021057) #22	NPC1L1 (ENSSGRG00000020746) #18	dusp2 (ENSSGRG00000020744)	adra2b (ENSSGRG00000020743)	gpat2 (ENSSGRG00000020742)	fahd2a (ENSSGRG00000020740)	zgc:152830 (ENSSGRG00000020726)	rnf10 (ENSSGRG00000020723)	olfml2a (ENSSGRG00000020722)
Goldfish	MODERN SPECIES	2832	mlec (ENSCARG00000052417)	cabp1a (ENSCARG00000052366)	asphd2 (ENSCARG00000052348)	ggt5a (ENSCARG00000052231)	ggt1a (ENSCARG00000052149)	GBGT1 (ENSCARG00000052125)	ENSCARG00000052113	gpx8 (ENSCARG00000052089)	anapc5 (ENSCARG00000051810)	rnf34a (ENSCARG00000051760)	kdm2ba (ENSCARG00000051705)	ORAI1 (ENSCARG00000051690)	aplnra (ENSCARG00000051687)	TBC1D10A (ENSCARG00000051462)	myl7 (ENSCARG00000051197) #23	gck (ENSCARG00000050688) #22	NPC1L1 (ENSCARG00000049845) #18	ENSCARG00000049815	dusp2 (ENSCARG00000049790)	adra2b (ENSCARG00000049781)	ENSCARG00000049776	gpat2 (ENSCARG00000049669)	FAHD2A (ENSCARG00000049645)	zgc:152830 (ENSCARG00000049369)	rnf10 (ENSCARG00000048951)	ENSCARG00000048874	olfml2a (ENSCARG00000048855)	arpc5la (ENSCARG00000048798)	golga1 (ENSCARG00000048730)	ENSCARG00000048702	ENSCARG00000048690
Cyprininae	ANCESTRAL SPECIES	109		ENSGT01100000263516.a.b.a	ENSGT00390000014595.b.b.g	ENSGT00390000016504.e	ENSGT00940000158555.a.a.b	ENSGT00940000159252.b.a.d	ENSGT00940000155794.h.d	ENSGT00940000154601.h.b.c.b	ENSGT00940000164235.a.c	ENSGT00390000012719.b.b.a	ENSGT00940000154717.pc.b.g	ENSGT00390000015354.d.a.a.c	ENSGT01050000244888.b.b.a.b.c.f	ENSGT00940000157386.a.h	ENSGT00940000161682 #23	ENSGT00950000182787.E.d.e.b.f #22	ENSGT00940000159904.a #18	ENSGT00940000161605.f	ENSGT00940000169964.b	ENSGT00940000161605.e.a	ENSGT00940000161915.d.b	ENSGT00520000055570.A.b.n	ENSGT00940000166311.a	ENSGT00530000063255.C.f	ENSGT00390000001731.e	ENSGT00390000012331	ENSGT00940000157194.c.d	ENSGT00940000153772.B.j	ENSGT00940000165424.a.b.b.f.b	ENSGT00940000154702.a.a.d	ENSGT00940000159361.f
Goldfish	MODERN SPECIES	48	ENSCARG00000011290	ENSCARG00000011308	unc119.1 (ENSCARG00000011338)	mlec (ENSCARG00000011354)	cabp1a (ENSCARG00000011364)	asphd2 (ENSCARG00000011401)	ggt5a (ENSCARG00000011407)	ggt1a (ENSCARG00000011451)	ENSCARG00000011839	rnf34a (ENSCARG00000011851)	kdm2ba (ENSCARG00000011867)	ORAI1 (ENSCARG00000011874)	aplnra (ENSCARG00000011879)	TBC1D10A (ENSCARG00000011888)	myl7 (ENSCARG00000034168) #23	gck (ENSCARG00000034445) #22	NPC1L1 (ENSCARG00000034713) #18	dusp2 (ENSCARG00000035266)	adra2b (ENSCARG00000035271)	kdm5bb (ENSCARG00000035316)	LMOD1 (ENSCARG00000036195)	ENSCARG00000036256	ENSCARG00000036265	INKA2 (ENSCARG00000036280)	ddx20 (ENSCARG00000036303)	kcnd3 (ENSCARG00000036422)	cttnbp2nlb (ENSCARG00000036462)	capza1b (ENSCARG00000036540)	wnt2bb (ENSCARG00000037964)	mov10b.1 (ENSCARG00000038065)	mov10b.2 (ENSCARG00000039971)
Cyprininae_a	ANCESTRAL SPECIES	103	ENSGT01030000235079.b	ENSGT00940000153818.a.b.a.a.b	ENSGT00390000014595.b.b.g	ENSGT00390000016504.e	ENSGT00940000158555.a.a.b	ENSGT00940000159252.b.a.d	ENSGT00940000155794.h.d	ENSGT00940000154601.h.b.c.b	ENSGT00940000164235.a.c	ENSGT00390000012719.b.b.a	ENSGT00940000154717.pc.b.g	ENSGT00390000015354.d.a.a.c	ENSGT01050000244888.b.b.a.b.c.f	ENSGT00940000157386.a.h	ENSGT00940000161682.e #23	ENSGT00950000182787.E.d.e.b.f #22	ENSGT00940000159904.a #18	ENSGT00940000161605.f	ENSGT00940000169964.b	ENSGT00940000161605.e.a	ENSGT00940000161915.d.b	ENSGT00520000055570.A.b.n	ENSGT00940000166311.a	ENSGT00530000063255.C.f	ENSGT00390000001731.e	ENSGT00390000012331	ENSGT00940000157194.c.d	ENSGT00940000154904.k.a.b	ENSGT00940000158501.d.b.b	ENSGT00940000153772.B.j	ENSGT00940000165424.a.b.b.f.b
Common carp reference	MODERN SPECIES	23	ENSCCRG00000074464	ENSCCRG00000030982	unc119.1 (ENSCCRG00000012390)	mlec (ENSCCRG00000006929)	cabp1a (ENSCCRG00000006907)	asphd2 (ENSCCRG00000003051)	ggt5a (ENSCCRG00000003077)	ggt1a (ENSCCRG00000074914)	ENSCCRG00000003199	rnf34a (ENSCCRG00000009228)	kdm2ba (ENSCCRG00000015568)	ORAI1 (ENSCCRG00000057249)	aplnra (ENSCCRG00000072102)	ENSCCRG00000015587	myl7 (ENSCCRG00000011546) #23	gck (ENSCCRG00000007721) #22	ENSCCRG00000001772 #18	ENSCCRG00000034529	dusp2 (ENSCCRG00000042641)	adra2b (ENSCCRG00000069849)	gpat2 (ENSCCRG00000047238)	fahd2a (ENSCCRG00000080892)	zgc:152830 (ENSCCRG00000020052)	rnf10 (ENSCCRG00000019888)	pop5 (ENSCCRG00000065097)	olfml2a (ENSCCRG00000079545)	ENSCCRG00000019851	arpc5la (ENSCCRG00000076754)	golga1 (ENSCCRG00000045351)	ENSCCRG00000045378	ENSCCRG00000069136
Golden-line barbel	MODERN SPECIES	409	hnf1a (ENSSGRG00000055516)	unc119.1 (ENSSGRG00000055515)	mlec (ENSSGRG00000055514)	cabp1a (ENSSGRG00000055513)	ggt5a (ENSSGRG00000055511)	ggt1a (ENSSGRG00000055510)	ENSSGRG00000055509	gpx8 (ENSSGRG00000055508)	anapc5 (ENSSGRG00000055507)	rnf34a (ENSSGRG00000055506)	kdm2ba (ENSSGRG00000055505)	ORAI1 (ENSSGRG00000055504)	aplnra (ENSSGRG00000055503)	TBC1D10A (ENSSGRG00000055502)	myl7 (ENSSGRG00000055501) #23	gck (ENSSGRG00000055500) #22	ENSSGRG00000055498 #18	dusp2 (ENSSGRG00000055497)	adra2b (ENSSGRG00000055496)	gpat2 (ENSSGRG00000055495)	fahd2a (ENSSGRG00000055494)	zgc:152830 (ENSSGRG00000055493)	rnf10 (ENSSGRG00000055492)	pop5 (ENSSGRG00000055491)	olfml2a (ENSSGRG00000055490)	ENSSGRG00000055489	arpc5la (ENSSGRG00000055488)	golga1 (ENSSGRG00000055487)	ENSSGRG00000055486	TMEM132C (ENSSGRG00000055483)	slc15a4 (ENSSGRG00000055481)
Zebrafish	MODERN SPECIES	23	unc119.1 (ENSDARG00000009629)	mlec (ENSDARG00000059630)	cabp1a (ENSDARG00000019990)	asphd2 (ENSDARG00000059629)	ggt5a (ENSDARG00000052045)	ggt1a (ENSDARG00000023526)	ENSDARG00000074308	gpx8 (ENSDARG00000013302)	anapc5 (ENSDARG00000008461)	rnf34a (ENSDARG00000038300)	kdm2ba (ENSDARG00000036593)	ORAI1 (ENSDARG00000011515)	aplnra (ENSDARG00000002172)	ENSDARG00000102070	myl7 (ENSDARG00000019096) #23	gck (ENSDARG00000068006) #22	NPC1L1 (ENSDARG00000099558) #18	izumo1 (ENSDARG00000116848)	dusp2 (ENSDARG00000098108)	adra2b (ENSDARG00000102096)	gpat2 (ENSDARG00000053575)	fahd2a (ENSDARG00000103759)	zgc:152830 (ENSDARG00000079932)	rnf10 (ENSDARG00000079687)	pop5 (ENSDARG00000053452)	olfml2a (ENSDARG00000005648)	ENSDARG00000094519	arpc5la (ENSDARG00000041720)	golga1 (ENSDARG00000008979)	ENSDARG00000078536	ENSDARG00000113940
Euteleosteomorpha	ANCESTRAL SPECIES	32	ENSGT00550000074846	ENSGT00940000156730.a	ENSGT01050000244968.c.d	ENSGT00940000159152.d	ENSGT00490000043388.a	ENSGT00940000158107.a.b	ENSGT00940000158936	ENSGT00730000111133	ENSGT00940000164321.c	ENSGT00940000155477	ENSGT00390000009488	ENSGT00940000158323.h #25	ENSGT00390000006780 #24	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00500000044987	ENSGT00390000002096	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00510000048500	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c
Acanthomorphata	ANCESTRAL SPECIES	13	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00390000000113.A
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00390000000113.A
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000156918	ENSGT00390000000378.d.b	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Fugu	MODERN SPECIES	13	enkd1 (ENSTRUG00000016411)	polb (ENSTRUG00000016417)	dynll1 (ENSTRUG00000016464)	rpl6 (ENSTRUG00000016438)	acaa2 (ENSTRUG00000016446)	mrpl40 (ENSTRUG00000025904)	si:ch211-51h9.6 (ENSTRUG00000031049)	ufd1l (ENSTRUG00000016457)	septin5a (ENSTRUG00000016478)	zgc:63587 (ENSTRUG00000016492)	cldn5a (ENSTRUG00000016497)	cdc45 (ENSTRUG00000016499)	plpp5 (ENSTRUG00000024109)	NSD3 (ENSTRUG00000016530)	LETM2 (ENSTRUG00000016542)	gck (ENSTRUG00000016548) #22	myl7 (ENSTRUG00000016554) #23	agpat9l (ENSTRUG00000024175)	ENSTRUG00000016570	fgf10b (ENSTRUG00000016593)	paip1 (ENSTRUG00000016598)	ITGA2 (ENSTRUG00000016601)	fst (ENSTRUG00000024561)	ndufs4 (ENSTRUG00000016661)	arl15a (ENSTRUG00000016663)	SNX18 (ENSTRUG00000016667)	ENSTRUG00000016672	lipg (ENSTRUG00000016676)	KCMF1 (ENSTRUG00000016694)	slc20a2 (ENSTRUG00000016698)	mthfd2l (ENSTRUG00000016708)
Tetraodon	MODERN SPECIES	3	vdac3 (ENSTNIG00000015918)	polb (ENSTNIG00000015919)	dynll1 (ENSTNIG00000015920)	rpl6 (ENSTNIG00000015921)	acaa2 (ENSTNIG00000015922)	ufd1l (ENSTNIG00000015923)	dynll1 (ENSTNIG00000015924)	dhx37 (ENSTNIG00000015925)	septin5a (ENSTNIG00000015926)	zgc:63587 (ENSTNIG00000015927)	cldn5a (ENSTNIG00000001355)	cdc45 (ENSTNIG00000015928)	plpp5 (ENSTNIG00000015929)	NSD3 (ENSTNIG00000015930)	LETM2 (ENSTNIG00000015931)	gck (ENSTNIG00000015932) #22	myl7 (ENSTNIG00000015933) #23	agpat9l (ENSTNIG00000015934)	ENSTNIG00000015935	fgf10b (ENSTNIG00000015936)	paip1 (ENSTNIG00000015937)	ITGA2 (ENSTNIG00000015938)	fsta (ENSTNIG00000015939)	ndufs4 (ENSTNIG00000015940)	arl15a (ENSTNIG00000015941)	SNX18 (ENSTNIG00000015942)	ENSTNIG00000015943	lipg (ENSTNIG00000015944)	KCMF1 (ENSTNIG00000015945)	slc20a2 (ENSTNIG00000015946)	mthfd2l (ENSTNIG00000015947)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Ballan wrasse	MODERN SPECIES	207	SLC25A1 (ENSLBEG00000024542)	ENSLBEG00000024511	snap29 (ENSLBEG00000024476)	ENSLBEG00000024452	serpind1 (ENSLBEG00000024431)	pi4kab (ENSLBEG00000024337)	HIC2 (ENSLBEG00000024306)	PRADC1 (ENSLBEG00000024295)	ENSLBEG00000024259	btf3 (ENSLBEG00000024220)	utp15 (ENSLBEG00000024186)	ENSLBEG00000024135	ENSLBEG00000024112	ENSLBEG00000024078	ykt6 (ENSLBEG00000024023) #21	gck (ENSLBEG00000023947) #22	myl7 (ENSLBEG00000023911) #23	agpat9l (ENSLBEG00000023825)	ENSLBEG00000023752	fgf10b (ENSLBEG00000023727)	paip1 (ENSLBEG00000023703)	ITGA2 (ENSLBEG00000023553)	fsta (ENSLBEG00000023469)	ndufs4 (ENSLBEG00000023446)	arl15a (ENSLBEG00000023423)	SNX18 (ENSLBEG00000023411)	ENSLBEG00000023385	si:dkey-193c22.1 (ENSLBEG00000023346)	lipg (ENSLBEG00000023295)	KCMF1 (ENSLBEG00000023232)	slc20a2 (ENSLBEG00000023110)
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.b	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
European seabass	MODERN SPECIES	13	ENSDLAG00005009688	ENSDLAG00005011016	ENSDLAG00005011102	snap29 (ENSDLAG00005011114)	pi4kab (ENSDLAG00005011163)	serpind1 (ENSDLAG00005012478)	ENSDLAG00005032387	ENSDLAG00005028735	ENSDLAG00005027524	ENSDLAG00005012509	ENSDLAG00005012524	ENSDLAG00005012546	ENSDLAG00005012633	ENSDLAG00005012671	YKT6 (ENSDLAG00005028548) #21	ENSDLAG00005012746 #22	MYL7 (ENSDLAG00005012969) #23	agpat9l (ENSDLAG00005013033)	ENSDLAG00005013168	fgf10b (ENSDLAG00005013668)	paip1 (ENSDLAG00005013678)	ITGA2 (ENSDLAG00005013706)	fsta (ENSDLAG00005026789)	ARL15 (ENSDLAG00005014340)	SNX18 (ENSDLAG00005014359)	ENSDLAG00005014382	ENSDLAG00005029999	ENSDLAG00005014441	ENSDLAG00005014495	ENSDLAG00005014518	ENSDLAG00005014587
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005011461	ENSLCRG00005011458	otpb (ENSLCRG00005011453)	scamp1 (ENSLCRG00005011448)	ENSLCRG00005011443	ENSLCRG00005011410	ENSLCRG00005011386	PRADC1 (ENSLCRG00005011382)	ENSLCRG00005011282	ENSLCRG00005011280	utp15 (ENSLCRG00005011271)	ENSLCRG00005011269	ENSLCRG00005011268	ENSLCRG00005011267	ykt6 (ENSLCRG00005011264) #21	gck (ENSLCRG00005011103) #22	myl7 (ENSLCRG00005011094) #23	agpat9l (ENSLCRG00005011020)	ENSLCRG00005010074	fgf10b (ENSLCRG00005010062)	paip1 (ENSLCRG00005010060)	ITGA2 (ENSLCRG00005009838)	fsta (ENSLCRG00005009824)	ndufs4 (ENSLCRG00005009822)	ENSLCRG00005009821	arl15a (ENSLCRG00005009818)	SNX18 (ENSLCRG00005009817)	ENSLCRG00005009816	si:dkey-193c22.1 (ENSLCRG00005009813)	lipg (ENSLCRG00005009711)	KCMF1 (ENSLCRG00005009709)
Gilthead seabream	MODERN SPECIES	19	ENSSAUG00010025184	CLTCL1 (ENSSAUG00010024475)	SLC25A1 (ENSSAUG00010024444)	ENSSAUG00010024438	snap29 (ENSSAUG00010024437)	serpind1 (ENSSAUG00010024436)	pi4kab (ENSSAUG00010023897)	hic1l (ENSSAUG00010023875)	PRADC1 (ENSSAUG00010023873)	ENSSAUG00010023870	ENSSAUG00010023868	utp15 (ENSSAUG00010023864)	ENSSAUG00010023863	ENSSAUG00010023861	ykt6 (ENSSAUG00010023859) #21	gck (ENSSAUG00010023799) #22	myl7 (ENSSAUG00010023797) #23	agpat9l (ENSSAUG00010023305)	ENSSAUG00010022262	fgf10b (ENSSAUG00010022252)	paip1 (ENSSAUG00010022157)	ITGA2 (ENSSAUG00010022011)	fsta (ENSSAUG00010021989)	ndufs4 (ENSSAUG00010021984)	arl15a (ENSSAUG00010021983)	SNX18 (ENSSAUG00010021980)	ENSSAUG00010021978	lipg (ENSSAUG00010021969)	KCMF1 (ENSSAUG00010021964)	slc20a2 (ENSSAUG00010021957)	mthfd2l (ENSSAUG00010021955)
Perciformes	ANCESTRAL SPECIES	6	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Stickleback	MODERN SPECIES	12	ENSGACG00000004160	CLTCL1 (ENSGACG00000004169)	SLC25A1 (ENSGACG00000004212)	ENSGACG00000004218	snap29 (ENSGACG00000004226)	pi4kab (ENSGACG00000004240)	serpind1 (ENSGACG00000004263)	hic1l (ENSGACG00000004268)	PRADC1 (ENSGACG00000004269)	ENSGACG00000004289	ENSGACG00000004293	utp15 (ENSGACG00000004300)	ENSGACG00000004374	ENSGACG00000004390	ykt6 (ENSGACG00000004398) #21	gck (ENSGACG00000004420) #22	myl7 (ENSGACG00000004447) #23	agpat9l (ENSGACG00000004452)	ENSGACG00000004500	fgf10b (ENSGACG00000004522)	paip1 (ENSGACG00000004529)	ITGA2 (ENSGACG00000004543)	fsta (ENSGACG00000004583)	ndufs4 (ENSGACG00000004614)	arl15a (ENSGACG00000004624)	SNX18 (ENSGACG00000004627)	ENSGACG00000004629	si:dkey-193c22.1 (ENSGACG00000004635)	lipg (ENSGACG00000004641)	KCMF1 (ENSGACG00000004678)	slc20a2 (ENSGACG00000004685)
Lumpfish	MODERN SPECIES	24	ikbkb (ENSCLMG00005012066)	PLAT (ENSCLMG00005012039)	CLTCL1 (ENSCLMG00005009416)	SLC25A1 (ENSCLMG00005009402)	ENSCLMG00005009401	snap29 (ENSCLMG00005009399)	serpind1 (ENSCLMG00005009398)	pi4kab (ENSCLMG00005008279)	hic1l (ENSCLMG00005008268)	PRADC1 (ENSCLMG00005008267)	ENSCLMG00005008253	ENSCLMG00005008249	utp15 (ENSCLMG00005008242)	ENSCLMG00005008234	ykt6 (ENSCLMG00005008231) #21	gck (ENSCLMG00005007588) #22	myl7 (ENSCLMG00005007578) #23	agpat9l (ENSCLMG00005004804)	ENSCLMG00005003310	fgf10b (ENSCLMG00005003268)	ENSCLMG00005003266	paip1 (ENSCLMG00005003264)	ITGA2 (ENSCLMG00005002672)	fsta (ENSCLMG00005002659)	ndufs4 (ENSCLMG00005002656)	arl15a (ENSCLMG00005002650)	LMBRD2 (ENSCLMG00005002639)	GOLM1 (ENSCLMG00005002631)	naa35 (ENSCLMG00005002628)	agtpbp1 (ENSCLMG00005002568)	NTRK2 (ENSCLMG00005002562)
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Pike perch	MODERN SPECIES	2	PLAT (ENSSLUG00000010821)	CLTCL1 (ENSSLUG00000004507)	SLC25A1 (ENSSLUG00000003990)	ENSSLUG00000003975	snap29 (ENSSLUG00000003973)	serpind1 (ENSSLUG00000003967)	pi4kab (ENSSLUG00000003593)	hic1l (ENSSLUG00000003424)	PRADC1 (ENSSLUG00000003419)	ENSSLUG00000003313	ENSSLUG00000003265	utp15 (ENSSLUG00000003204)	ENSSLUG00000021208	ENSSLUG00000021197	ykt6 (ENSSLUG00000021195) #21	gck (ENSSLUG00000021112) #22	myl7 (ENSSLUG00000021100) #23	agpat9l (ENSSLUG00000020611)	ENSSLUG00000020526	fgf10b (ENSSLUG00000020501)	paip1 (ENSSLUG00000020485)	ITGA2 (ENSSLUG00000020435)	fsta (ENSSLUG00000020419)	ndufs4 (ENSSLUG00000020415)	arl15a (ENSSLUG00000020409)	SNX18 (ENSSLUG00000020397)	ENSSLUG00000020385	ENSSLUG00000020379	lipg (ENSSLUG00000020374)	KCMF1 (ENSSLUG00000020349)	slc20a2 (ENSSLUG00000020314)
Channel bull blenny	MODERN SPECIES	23	PLAT (ENSCGOG00000016495)	CLTCL1 (ENSCGOG00000016630)	SLC25A1 (ENSCGOG00000018092)	ENSCGOG00000018264	snap29 (ENSCGOG00000018265)	pi4kab (ENSCGOG00000018273)	serpind1 (ENSCGOG00000018481)	hic1l (ENSCGOG00000018483)	PRADC1 (ENSCGOG00000018484)	ENSCGOG00000018486	btf3 (ENSCGOG00000018488)	utp15 (ENSCGOG00000018492)	ENSCGOG00000018574	ENSCGOG00000018576	ykt6 (ENSCGOG00000018580) #21	gck (ENSCGOG00000018589) #22	myl7 (ENSCGOG00000018931) #23	agpat9l (ENSCGOG00000018948)	ENSCGOG00000019500	fgf10b (ENSCGOG00000019921)	paip1 (ENSCGOG00000019937)	ITGA2 (ENSCGOG00000019975)	fsta (ENSCGOG00000000491)	ndufs4 (ENSCGOG00000000567)	arl15a (ENSCGOG00000000572)	SNX18 (ENSCGOG00000000576)	ENSCGOG00000000578	ENSCGOG00000000585	lipg (ENSCGOG00000000621)	KCMF1 (ENSCGOG00000000700)	slc20a2 (ENSCGOG00000000714)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Carangaria	ANCESTRAL SPECIES	9	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00950000183166.a.b.g	ENSGT00950000183166.a.b.h	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Turbot	MODERN SPECIES	21	ENSSMAG00000006680	ENSSMAG00000006744	ENSSMAG00000006778	ENSSMAG00000006864	ENSSMAG00000006898	snap29 (ENSSMAG00000006905)	pi4kab (ENSSMAG00000006945)	serpind1 (ENSSMAG00000007015)	ENSSMAG00000007076	ENSSMAG00000023110	ENSSMAG00000007090	ENSSMAG00000028796	ENSSMAG00000007133	ENSSMAG00000007177	YKT6 (ENSSMAG00000007376) #21	ENSSMAG00000007420 #22	MYL7 (ENSSMAG00000007475) #23	agpat9l (ENSSMAG00000007691)	ENSSMAG00000007742	fgf10b (ENSSMAG00000007781)	paip1 (ENSSMAG00000007789)	ITGA2 (ENSSMAG00000007807)	FST (ENSSMAG00000007849)	NDUFS4 (ENSSMAG00000007862)	arl15a (ENSSMAG00000007879)	SNX18 (ENSSMAG00000007896)	ENSSMAG00000007902	lipg (ENSSMAG00000007932)	ENSSMAG00000007959	ENSSMAG00000007994	mthfd2l (ENSSMAG00000023070)
Tongue sole	MODERN SPECIES	398	SLC25A1 (ENSCSEG00000019860)	ENSCSEG00000019872	snap29 (ENSCSEG00000019875)	ENSCSEG00000019878	pi4kab (ENSCSEG00000019881)	serpind1 (ENSCSEG00000019894)	hic1l (ENSCSEG00000019899)	ENSCSEG00000019901	ENSCSEG00000019906	ENSCSEG00000019915	utp15 (ENSCSEG00000019924)	ENSCSEG00000019930	ENSCSEG00000019935	ENSCSEG00000019939	ykt6 (ENSCSEG00000019949) #21	gck (ENSCSEG00000019959) #22	myl7 (ENSCSEG00000019995) #23	agpat9l (ENSCSEG00000020003)	ENSCSEG00000020031	fgf10b (ENSCSEG00000020050)	paip1 (ENSCSEG00000020061)	ITGA2 (ENSCSEG00000020069)	fst (ENSCSEG00000020085)	ndufs4 (ENSCSEG00000020101)	arl15a (ENSCSEG00000020106)	SNX18 (ENSCSEG00000020116)	ENSCSEG00000020117	lipg (ENSCSEG00000020121)	KCMF1 (ENSCSEG00000020128)	slc20a2 (ENSCSEG00000020131)	mthfd2l (ENSCSEG00000020140)
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Seriola	ANCESTRAL SPECIES	40	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Yellowtail amberjack	MODERN SPECIES	2722								hic1l (ENSSLDG00000003123)	PRADC1 (ENSSLDG00000003134)	ENSSLDG00000003158	ENSSLDG00000003244	utp15 (ENSSLDG00000003254)	ENSSLDG00000003268	ENSSLDG00000003331	ykt6 (ENSSLDG00000003431) #21	gck (ENSSLDG00000003477) #22	myl7 (ENSSLDG00000003532) #23	agpat9l (ENSSLDG00000003557)	ENSSLDG00000003685	fgf10b (ENSSLDG00000003715)	paip1 (ENSSLDG00000003742)	ITGA2 (ENSSLDG00000003810)	fsta (ENSSLDG00000003864)	ndufs4 (ENSSLDG00000003898)	arl15a (ENSSLDG00000003910)	snx18a (ENSSLDG00000003924)	ENSSLDG00000003948	si:dkey-193c22.1 (ENSSLDG00000003965)	lipg (ENSSLDG00000004006)	KCMF1 (ENSSLDG00000004068)	slc20a2 (ENSSLDG00000004157)
Greater amberjack	MODERN SPECIES	175	ENSSDUG00000022925	CLTCL1 (ENSSDUG00000022890)	SLC25A1 (ENSSDUG00000022882)	ENSSDUG00000022876	snap29 (ENSSDUG00000022863)	serpind1 (ENSSDUG00000022851)	pi4kab (ENSSDUG00000022824)	hic1l (ENSSDUG00000022819)	PRADC1 (ENSSDUG00000022817)	ENSSDUG00000022800	ENSSDUG00000022797	utp15 (ENSSDUG00000022792)	ENSSDUG00000022780	ENSSDUG00000022771	ykt6 (ENSSDUG00000022764) #21	gck (ENSSDUG00000022756) #22	myl7 (ENSSDUG00000022706) #23	agpat9l (ENSSDUG00000022688)	ENSSDUG00000022593	fgf10b (ENSSDUG00000022580)	paip1 (ENSSDUG00000022573)	ITGA2 (ENSSDUG00000022562)	fsta (ENSSDUG00000022552)	ndufs4 (ENSSDUG00000022545)	arl15a (ENSSDUG00000022540)	SNX18 (ENSSDUG00000022534)	ENSSDUG00000022530	si:dkey-193c22.1 (ENSSDUG00000022522)	lipg (ENSSDUG00000022514)	KCMF1 (ENSSDUG00000022507)	slc20a2 (ENSSDUG00000022499)
Barramundi perch	MODERN SPECIES	9	ENSLCAG00010002866	CLTCL1 (ENSLCAG00010002180)	SLC25A1 (ENSLCAG00010001907)	ENSLCAG00010001893	snap29 (ENSLCAG00010001891)	serpind1 (ENSLCAG00010001884)	pi4kab (ENSLCAG00010001524)	hic1l (ENSLCAG00010001402)	ENSLCAG00010001398	ENSLCAG00010001390	ENSLCAG00010001380	utp15 (ENSLCAG00010001329)	ENSLCAG00010001311	ENSLCAG00010001305	ykt6 (ENSLCAG00010001295) #21	gck (ENSLCAG00010001272) #22	myl7 (ENSLCAG00010001248) #23	agpat9l (ENSLCAG00010001057)	ENSLCAG00010000990	fgf10b (ENSLCAG00010000967)	paip1 (ENSLCAG00010000964)	ITGA2 (ENSLCAG00010000821)	fsta (ENSLCAG00010000721)	ndufs4 (ENSLCAG00010000710)	arl15a (ENSLCAG00010000701)	SNX18 (ENSLCAG00010000690)	ENSLCAG00010000665	lipg (ENSLCAG00010000645)	KCMF1 (ENSLCAG00010000635)	slc20a2 (ENSLCAG00010000609)	mthfd2l (ENSLCAG00010000585)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Zig-zag eel	MODERN SPECIES	23	ikbkb (ENSMAMG00000014045)	ENSMAMG00000014017	ENSMAMG00000013857	ENSMAMG00000013831	ENSMAMG00000013809	snap29 (ENSMAMG00000013707)	serpind1 (ENSMAMG00000013633)	pi4kab (ENSMAMG00000013495)	ENSMAMG00000013476	PRADC1 (ENSMAMG00000024659)	ENSMAMG00000013398	ENSMAMG00000027147	ENSMAMG00000013321	ENSMAMG00000013241	YKT6 (ENSMAMG00000013181) #21	ENSMAMG00000013140 #22	MYL7 (ENSMAMG00000012490) #23	agpat9l (ENSMAMG00000012428)	ENSMAMG00000012219	fgf10b (ENSMAMG00000012194)	paip1 (ENSMAMG00000012182)	ITGA2 (ENSMAMG00000012166)	FST (ENSMAMG00000012157)	NDUFS4 (ENSMAMG00000012147)	ARL15 (ENSMAMG00000012137)	SNX18 (ENSMAMG00000012134)	ENSMAMG00000012130	lipg (ENSMAMG00000012095)	ENSMAMG00000012066	ENSMAMG00000012014	ENSMAMG00000011999
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.j #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b	ENSGT00940000166353
Siamese fighting fish	MODERN SPECIES	20	PLAT (ENSBSLG00000012684)	ENSBSLG00000012705	CLTCL1 (ENSBSLG00000012713)	SLC25A1 (ENSBSLG00000013686)	ENSBSLG00000013875	snap29 (ENSBSLG00000013879)	pi4kab (ENSBSLG00000013900)	serpind1 (ENSBSLG00000014355)	hic1l (ENSBSLG00000014367)	ENSBSLG00000014375	ENSBSLG00000014400	utp15 (ENSBSLG00000014429)	ENSBSLG00000014471	ENSBSLG00000001705	ykt6 (ENSBSLG00000001721) #21	gck (ENSBSLG00000001762) #22	myl7 (ENSBSLG00000001829) #23	agpat9l (ENSBSLG00000001879)	ENSBSLG00000002003	fgf10b (ENSBSLG00000002035)	paip1 (ENSBSLG00000002038)	ITGA2 (ENSBSLG00000002206)	fsta (ENSBSLG00000002430)	ndufs4 (ENSBSLG00000002490)	arl15a (ENSBSLG00000002504)	SNX18 (ENSBSLG00000002517)	ENSBSLG00000002550	lipg (ENSBSLG00000002582)	KCMF1 (ENSBSLG00000002598)	slc20a2 (ENSBSLG00000002706)	mthfd2l (ENSBSLG00000002889)
Climbing perch	MODERN SPECIES	22	ENSATEG00000020957	ENSATEG00000021046	ENSATEG00000029495	snap29 (ENSATEG00000021079)	pi4kab (ENSATEG00000021117)	serpind1 (ENSATEG00000021178)	ENSATEG00000021233	ENSATEG00000021240	ENSATEG00000021246	ENSATEG00000026260	ENSATEG00000021278	ENSATEG00000028531	ENSATEG00000028194	ENSATEG00000021322	YKT6 (ENSATEG00000021349) #21	ENSATEG00000021372 #22	MYL7 (ENSATEG00000021408) #23	agpat9l (ENSATEG00000021736)	ENSATEG00000021779	fgf10b (ENSATEG00000028097)	paip1 (ENSATEG00000021896)	ITGA2 (ENSATEG00000021953)	FST (ENSATEG00000022176)	NDUFS4 (ENSATEG00000022261)	arl15a (ENSATEG00000022296)	SNX18 (ENSATEG00000022304)	ENSATEG00000022307	lipg (ENSATEG00000022328)	ENSATEG00000022351	ENSATEG00000022376	mthfd2l (ENSATEG00000022404)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Aplocheiloidei	ANCESTRAL SPECIES	21	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Mangrove rivulus	MODERN SPECIES	21	vdac3 (ENSKMAG00000003937)	ikbkb (ENSKMAG00000003977)	PLAT (ENSKMAG00000004012)	CLTCL1 (ENSKMAG00000004093)	SLC25A1 (ENSKMAG00000004257)	ENSKMAG00000004312	snap29 (ENSKMAG00000004340)	pi4kab (ENSKMAG00000004404)	serpind1 (ENSKMAG00000004579)	hic1l (ENSKMAG00000004641)	ENSKMAG00000004661	ENSKMAG00000004693	utp15 (ENSKMAG00000004713)	ENSKMAG00000004771	ykt6 (ENSKMAG00000004894) #21	gck (ENSKMAG00000004940) #22	myl7 (ENSKMAG00000004993) #23	agpat9l (ENSKMAG00000005035)	ENSKMAG00000005092	fgf10b (ENSKMAG00000005117)	paip1 (ENSKMAG00000005128)	ITGA2 (ENSKMAG00000005160)	ENSKMAG00000005203	fsta (ENSKMAG00000005219)	ndufs4 (ENSKMAG00000005243)	arl15a (ENSKMAG00000005273)	SNX18 (ENSKMAG00000005306)	ENSKMAG00000005324	si:dkey-193c22.1 (ENSKMAG00000005350)	lipg (ENSKMAG00000005377)	KCMF1 (ENSKMAG00000005421)
Turquoise killifish	MODERN SPECIES	1627	ikbkb (ENSNFUG00015015755)	PLAT (ENSNFUG00015016559)	ENSNFUG00015016594	SLC25A1 (ENSNFUG00015016764)	ENSNFUG00015016808	snap29 (ENSNFUG00015016817)	pi4kab (ENSNFUG00015016838)	serpind1 (ENSNFUG00015016997)	ENSNFUG00015017007	BTF3 (ENSNFUG00015017060)	UTP15 (ENSNFUG00015017071)	ENSNFUG00015017100	ENSNFUG00015017115	YKT6 (ENSNFUG00015017130) #21	ENSNFUG00015017141	gck (ENSNFUG00015017155) #22	myl7 (ENSNFUG00015017695) #23	agpat9l (ENSNFUG00015017725)	ENSNFUG00015017960	fgf10b (ENSNFUG00015018359)	paip1 (ENSNFUG00015018364)	ITGA2 (ENSNFUG00015018385)	fsta (ENSNFUG00015018417)	ndufs4 (ENSNFUG00015018419)	arl15a (ENSNFUG00015018427)	SNX18A (ENSNFUG00015018435)	ENSNFUG00015018444	LIPG (ENSNFUG00015018457)	ENSNFUG00015018461	ENSNFUG00015018466	SLC20A2 (ENSNFUG00015018477)
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
NAME_4	ANCESTRAL SPECIES	24	ENSGT00940000158930	ENSGT00940000155715	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.b	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
Mummichog	MODERN SPECIES	2224	ENSFHEG00000007305	ENSFHEG00000007276	SLC25A1 (ENSFHEG00000000190)	ENSFHEG00000007111	snap29 (ENSFHEG00000007100)	ENSFHEG00000007092	pi4kab (ENSFHEG00000007087)	serpind1 (ENSFHEG00000006972)	hic1l (ENSFHEG00000006964)	ENSFHEG00000006954	ENSFHEG00000006938	utp15 (ENSFHEG00000006935)	ENSFHEG00000006903	ENSFHEG00000006879	ykt6 (ENSFHEG00000006835) #21	gck (ENSFHEG00000006791) #22	agpat9l (ENSFHEG00000006757)	ENSFHEG00000006660	fgf10b (ENSFHEG00000006463)	paip1 (ENSFHEG00000006388)	ITGA2 (ENSFHEG00000006346)	fsta (ENSFHEG00000005819)	ndufs4 (ENSFHEG00000005778)	arl15a (ENSFHEG00000005739)	SNX18 (ENSFHEG00000005705)	ENSFHEG00000005700	si:dkey-193c22.1 (ENSFHEG00000005683)	lipg (ENSFHEG00000005665)	KCMF1 (ENSFHEG00000005646)	slc20a2 (ENSFHEG00000005617)	mthfd2l (ENSFHEG00000005604)
Sheepshead minnow	MODERN SPECIES	372	PLAT (ENSCVAG00000018691)	CLTCL1 (ENSCVAG00000018908)	SLC25A1 (ENSCVAG00000018934)	ENSCVAG00000018960	snap29 (ENSCVAG00000018974)	ENSCVAG00000000498	serpind1 (ENSCVAG00000019071)	pi4kab (ENSCVAG00000019178)	hic1l (ENSCVAG00000019191)	ENSCVAG00000019414	ENSCVAG00000019427	utp15 (ENSCVAG00000019484)	ENSCVAG00000019520	ENSCVAG00000019586	ykt6 (ENSCVAG00000019624) #21	gck (ENSCVAG00000019648) #22	myl7 (ENSCVAG00000019878) #23	agpat9l (ENSCVAG00000019955)	ENSCVAG00000019965	fgf10b (ENSCVAG00000019980)	paip1 (ENSCVAG00000019990)	ITGA2 (ENSCVAG00000020002)	fsta (ENSCVAG00000020018)	ndufs4 (ENSCVAG00000020143)
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469.c	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Poecilia	ANCESTRAL SPECIES	3	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469.c	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
NAME_6	ANCESTRAL SPECIES	27	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000010435.B	ENSGT00390000010435.A	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469.c	ENSGT00500000045469.d	ENSGT00940000159394	ENSGT00510000047171.z
Sailfin molly	MODERN SPECIES	1432															ykt6 (ENSPLAG00000012300) #21	gck (ENSPLAG00000012267) #22	myl7 (ENSPLAG00000012192) #23	agpat9l (ENSPLAG00000012074)	ENSPLAG00000011986	fgf10b (ENSPLAG00000011770)	paip1 (ENSPLAG00000011737)	ENSPLAG00000011728	fsta (ENSPLAG00000011719)	ENSPLAG00000011699
Amazon molly	MODERN SPECIES	398	ENSPFOG00000022633	SLC25A1 (ENSPFOG00000013766)	ENSPFOG00000013826	snap29 (ENSPFOG00000013846)	pi4kab (ENSPFOG00000013937)	serpind1 (ENSPFOG00000014362)	hic1l (ENSPFOG00000020465)	ENSPFOG00000020466	ENSPFOG00000020467	ENSPFOG00000014391	ENSPFOG00000014417	utp15 (ENSPFOG00000014446)	ENSPFOG00000014551	ENSPFOG00000014709	ykt6 (ENSPFOG00000014752) #21	gck (ENSPFOG00000014781) #22	myl7 (ENSPFOG00000023042) #23	agpat9l (ENSPFOG00000014830)	ENSPFOG00000014967	fgf10b (ENSPFOG00000015144)	paip1 (ENSPFOG00000015156)	ITGA2 (ENSPFOG00000015223)	fsta (ENSPFOG00000015386)	ndufs4 (ENSPFOG00000015416)	fsta (ENSPFOG00000015402)	arl15a (ENSPFOG00000015432)	SNX18 (ENSPFOG00000015453)	ENSPFOG00000015480	si:dkey-193c22.1 (ENSPFOG00000015544)	si:dkey-193c22.1 (ENSPFOG00000022840)	lipg (ENSPFOG00000015561)
Guppy	MODERN SPECIES	461	ikbkb (ENSPREG00000011213)	PLAT (ENSPREG00000011099)	CLTCL1 (ENSPREG00000010914)	SLC25A1 (ENSPREG00000010834)	ENSPREG00000010799	snap29 (ENSPREG00000010781)	serpind1 (ENSPREG00000010743)	pi4kab (ENSPREG00000010519)	hic1l (ENSPREG00000010443)	ENSPREG00000010433	btf3 (ENSPREG00000010425)	utp15 (ENSPREG00000010394)	ENSPREG00000010365	ENSPREG00000010332	ykt6 (ENSPREG00000010307) #21	gck (ENSPREG00000010287) #22	myl7 (ENSPREG00000010188) #23	agpat9l (ENSPREG00000010141)	ENSPREG00000010091	fgf10b (ENSPREG00000010036)	paip1 (ENSPREG00000009992)	ITGA2 (ENSPREG00000009651)	fsta (ENSPREG00000009592)	ndufs4 (ENSPREG00000009567)	arl15a (ENSPREG00000009533)	SNX18 (ENSPREG00000009516)	ENSPREG00000009489	si:dkey-193c22.1 (ENSPREG00000009459)	lipg (ENSPREG00000009442)	KCMF1 (ENSPREG00000009427)	slc20a2 (ENSPREG00000009403)
Platyfish	MODERN SPECIES	3	PLAT (ENSXMAG00000014441)	ENSXMAG00000024435	ENSXMAG00000014407	SLC25A1 (ENSXMAG00000023920)	ENSXMAG00000026447	snap29 (ENSXMAG00000014386)	serpind1 (ENSXMAG00000014376)	pi4kab (ENSXMAG00000014261)	hic1l (ENSXMAG00000020311)	ENSXMAG00000014244	ENSXMAG00000014235	utp15 (ENSXMAG00000014206)	ENSXMAG00000010048	ENSXMAG00000010077	ykt6 (ENSXMAG00000010079) #21	gck (ENSXMAG00000010091) #22	myl7 (ENSXMAG00000028048) #23	agpat9l (ENSXMAG00000010100)	ENSXMAG00000010104	fgf10b (ENSXMAG00000010136)	paip1 (ENSXMAG00000010142)	ITGA2 (ENSXMAG00000010158)	fsta (ENSXMAG00000010188)	ndufs4 (ENSXMAG00000010194)	arl15a (ENSXMAG00000010199)	SNX18 (ENSXMAG00000010209)	ENSXMAG00000010213	si:dkey-193c22.1 (ENSXMAG00000010220)	lipg (ENSXMAG00000010221)	KCMF1 (ENSXMAG00000010233)	slc20a2 (ENSXMAG00000010244)
Oryzias	ANCESTRAL SPECIES	7	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00940000158930	ENSGT00950000183166.a.a.a.b.f	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Indian medaka	MODERN SPECIES	11	ENSOMEG00000000698	CLTCL1 (ENSOMEG00000017096)	SLC25A1 (ENSOMEG00000016887)	ENSOMEG00000016836	snap29 (ENSOMEG00000016798)	ENSOMEG00000000422	serpind1 (ENSOMEG00000016719)	ENSOMEG00000016702	ENSOMEG00000016693	ENSOMEG00000016684	ENSOMEG00000016664	utp15 (ENSOMEG00000016645)	ENSOMEG00000016601	ENSOMEG00000016495	ykt6 (ENSOMEG00000016458) #21	gck (ENSOMEG00000016412) #22	myl7 (ENSOMEG00000016344) #23	agpat9l (ENSOMEG00000016325)	ENSOMEG00000016271	fgf10b (ENSOMEG00000016202)	paip1 (ENSOMEG00000016193)	ITGA2 (ENSOMEG00000016166)	fsta (ENSOMEG00000016040)	ndufs4 (ENSOMEG00000016013)	arl15a (ENSOMEG00000015984)	SNX18 (ENSOMEG00000015951)	ENSOMEG00000015925	si:dkey-193c22.1 (ENSOMEG00000015885)	lipg (ENSOMEG00000015852)	KCMF1 (ENSOMEG00000015806)	slc20a2 (ENSOMEG00000015757)
Javanese ricefish	MODERN SPECIES	23	vdac3 (ENSOJAG00000001251)	ikbkb (ENSOJAG00000001342)	PLAT (ENSOJAG00000001594)	ENSOJAG00000001714	SLC25A1 (ENSOJAG00000001786)	ENSOJAG00000001829	snap29 (ENSOJAG00000001837)	serpind1 (ENSOJAG00000002015)	hic1l (ENSOJAG00000002257)	ENSOJAG00000002266	ENSOJAG00000002288	utp15 (ENSOJAG00000002316)	ENSOJAG00000002360	ENSOJAG00000002380	ykt6 (ENSOJAG00000002427) #21	gck (ENSOJAG00000002460) #22	myl7 (ENSOJAG00000002542) #23	agpat9l (ENSOJAG00000002587)	fgf10b (ENSOJAG00000002891)	paip1 (ENSOJAG00000002905)	ITGA2 (ENSOJAG00000002938)	fsta (ENSOJAG00000003042)	ndufs4 (ENSOJAG00000003082)	ENSOJAG00000003090	arl15a (ENSOJAG00000003098)	SNX18 (ENSOJAG00000003107)	ENSOJAG00000003118	lipg (ENSOJAG00000003189)	KCMF1 (ENSOJAG00000003357)	slc20a2 (ENSOJAG00000003403)	ENSOJAG00000003453
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Japanese Medaka HdrR	MODERN SPECIES	23	CLTCL1 (ENSORLG00000002325)	ENSORLG00000002292	ENSORLG00000002270	snap29 (ENSORLG00000002265)	serpind1 (ENSORLG00000002247)	ENSORLG00000002217	ENSORLG00000025725	hic1l (ENSORLG00000002131)	ENSORLG00000002115	ENSORLG00000002109	utp15 (ENSORLG00000002095)	ENSORLG00000022899	ENSORLG00000026612	ENSORLG00000002039	ykt6 (ENSORLG00000002028) #21	gck (ENSORLG00000002010) #22	myl7 (ENSORLG00000001993) #23	agpat9l (ENSORLG00000001978)	ENSORLG00000001958	fgf10b (ENSORLG00000029413)	paip1 (ENSORLG00000001934)	ITGA2 (ENSORLG00000001925)	fsta (ENSORLG00000001892)	ndufs4 (ENSORLG00000026340)	arl15a (ENSORLG00000001879)	SNX18 (ENSORLG00000001877)	ENSORLG00000001870	si:dkey-193c22.1 (ENSORLG00000001866)	lipg (ENSORLG00000001863)	ENSORLG00000001840	slc20a2 (ENSORLG00000001828)
Chinese medaka	MODERN SPECIES	37	PLAT (ENSOSIG00000016693)	ENSOSIG00000016705	CLTCL1 (ENSOSIG00000016756)	SLC25A1 (ENSOSIG00000017188)	ENSOSIG00000017916	snap29 (ENSOSIG00000017919)	pi4kab (ENSOSIG00000018406)	serpind1 (ENSOSIG00000022942)	hic1l (ENSOSIG00000022947)	ENSOSIG00000022949	ENSOSIG00000022955	utp15 (ENSOSIG00000022961)	ENSOSIG00000022968	ENSOSIG00000022981	ykt6 (ENSOSIG00000022991) #21	gck (ENSOSIG00000023011) #22	myl7 (ENSOSIG00000023042) #23	agpat9l (ENSOSIG00000023096)	ENSOSIG00000023321	fgf10b (ENSOSIG00000023383)	paip1 (ENSOSIG00000023388)	fsta (ENSOSIG00000001688)	ndufs4 (ENSOSIG00000003317)	arl15a (ENSOSIG00000003325)	ENSOSIG00000003330	ENSOSIG00000003334	lipg (ENSOSIG00000003342)	KCMF1 (ENSOSIG00000003375)	slc20a2 (ENSOSIG00000003396)	ENSOSIG00000003404	ENSOSIG00000003411
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Pomacentridae	ANCESTRAL SPECIES		ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Amphiprion	ANCESTRAL SPECIES	20	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Clown anemonefish	MODERN SPECIES	776															ykt6 (ENSAOCG00000006959) #21	gck (ENSAOCG00000006915) #22	myl7 (ENSAOCG00000002204) #23	agpat9l (ENSAOCG00000006870)	ENSAOCG00000006810	fgf10b (ENSAOCG00000006632)	paip1 (ENSAOCG00000006621)	ITGA2 (ENSAOCG00000006607)	fsta (ENSAOCG00000006573)	ndufs4 (ENSAOCG00000002045)	arl15a (ENSAOCG00000006541)	SNX18 (ENSAOCG00000006519)	ENSAOCG00000006510	si:dkey-193c22.1 (ENSAOCG00000006501)	lipg (ENSAOCG00000006465)	KCMF1 (ENSAOCG00000006405)	OPRK1 (ENSAOCG00000006366)
Orange clownfish	MODERN SPECIES	19	CLTCL1 (ENSAPEG00000016960)	SLC25A1 (ENSAPEG00000016890)	ENSAPEG00000016859	snap29 (ENSAPEG00000016832)	ENSAPEG00000016807	serpind1 (ENSAPEG00000016774)	pi4kab (ENSAPEG00000016643)	hic1l (ENSAPEG00000016621)	PRADC1 (ENSAPEG00000016611)	ENSAPEG00000016596	ENSAPEG00000016568	utp15 (ENSAPEG00000016524)	ENSAPEG00000016443	ENSAPEG00000016384	ykt6 (ENSAPEG00000016345) #21	gck (ENSAPEG00000016306) #22	myl7 (ENSAPEG00000016296) #23	agpat9l (ENSAPEG00000016241)	ENSAPEG00000016074	fgf10b (ENSAPEG00000015990)	paip1 (ENSAPEG00000015887)	ITGA2 (ENSAPEG00000015849)	fsta (ENSAPEG00000015818)	ndufs4 (ENSAPEG00000015811)	arl15a (ENSAPEG00000015789)	SNX18 (ENSAPEG00000015781)	ENSAPEG00000015772	si:dkey-193c22.1 (ENSAPEG00000015708)	lipg (ENSAPEG00000015693)	KCMF1 (ENSAPEG00000015661)	mccc2 (ENSAPEG00000015598)
Spiny chromis	MODERN SPECIES	802	CLTCL1 (ENSAPOG00000005313)	SLC25A1 (ENSAPOG00000005359)	ENSAPOG00000005393	snap29 (ENSAPOG00000005409)	ENSAPOG00000005451	serpind1 (ENSAPOG00000005481)	pi4kab (ENSAPOG00000005676)	hic1l (ENSAPOG00000005694)	PRADC1 (ENSAPOG00000000135)	ENSAPOG00000000140	ENSAPOG00000005811	utp15 (ENSAPOG00000005857)	ENSAPOG00000005933	ENSAPOG00000005993	ykt6 (ENSAPOG00000000157) #21	gck (ENSAPOG00000006075) #22	myl7 (ENSAPOG00000006086) #23	agpat9l (ENSAPOG00000006161)	ENSAPOG00000006343	fgf10b (ENSAPOG00000006359)	paip1 (ENSAPOG00000006399)
Bicolor damselfish	MODERN SPECIES	616	PLAT (ENSSPAG00000007540)	ENSSPAG00000007570	CLTCL1 (ENSSPAG00000007607)	SLC25A1 (ENSSPAG00000007816)	ENSSPAG00000007890	snap29 (ENSSPAG00000007913)	pi4kab (ENSSPAG00000007946)	serpind1 (ENSSPAG00000008061)	hic1l (ENSSPAG00000008074)	PRADC1 (ENSSPAG00000008080)	ENSSPAG00000008087	ENSSPAG00000008105	utp15 (ENSSPAG00000008124)	ENSSPAG00000008181	ykt6 (ENSSPAG00000008268) #21	gck (ENSSPAG00000008318) #22	myl7 (ENSSPAG00000008390) #23	agpat9l (ENSSPAG00000009484)	ENSSPAG00000009540	fgf10b (ENSSPAG00000009567)	paip1 (ENSSPAG00000009614)	ITGA2 (ENSSPAG00000009634)	fsta (ENSSPAG00000009674)	ndufs4 (ENSSPAG00000009698)
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z	ENSGT00390000014879.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.m.b #23	ENSGT00940000161682.m.a #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.m.b #23	ENSGT00940000161682.m.a #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.m.b #23	ENSGT00940000161682.m.a #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
Burton s mouthbrooder	MODERN SPECIES	334	PLAT (ENSHBUG00000013432)	CLTCL1 (ENSHBUG00000013415)	SLC25A1 (ENSHBUG00000013343)	ENSHBUG00000013312	snap29 (ENSHBUG00000013276)	pi4kab (ENSHBUG00000013182)	serpind1 (ENSHBUG00000013043)	hic1l (ENSHBUG00000012959)	PRADC1 (ENSHBUG00000012952)	ENSHBUG00000012926	ENSHBUG00000012857	utp15 (ENSHBUG00000000370)	ENSHBUG00000012797	ENSHBUG00000012781	ykt6 (ENSHBUG00000012726) #21	gck (ENSHBUG00000012698) #22	myl7 (ENSHBUG00000012666) #23	agpat9l (ENSHBUG00000012475)	ENSHBUG00000012400	fgf10b (ENSHBUG00000012382)	paip1 (ENSHBUG00000012178)	ITGA2 (ENSHBUG00000012123)	fsta (ENSHBUG00000012106)	ndufs4 (ENSHBUG00000012082)	arl15a (ENSHBUG00000012049)	SNX18 (ENSHBUG00000012013)	ENSHBUG00000012001	si:dkey-193c22.1 (ENSHBUG00000011994)	lipg (ENSHBUG00000011980)	KCMF1 (ENSHBUG00000011915)	slc20a2 (ENSHBUG00000011867)
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00390000004228	ENSGT00940000180287	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.m.b #23	ENSGT00940000161682.m.a #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
P. nyererei	MODERN SPECIES	377	CLTCL1 (ENSPNYG00000007725)	SLC25A1 (ENSPNYG00000007651)	ENSPNYG00000007632	snap29 (ENSPNYG00000007619)	ENSPNYG00000007596	serpind1 (ENSPNYG00000007537)	pi4kab (ENSPNYG00000007420)	hic1l (ENSPNYG00000007402)	ENSPNYG00000007391	ENSPNYG00000007329	utp15 (ENSPNYG00000007278)	ENSPNYG00000007260	ENSPNYG00000007205	ENSPNYG00000007172	ykt6 (ENSPNYG00000007144) #21	gck (ENSPNYG00000007097) #22	myl7 (ENSPNYG00000006466) #23	agpat9l (ENSPNYG00000006308)	ENSPNYG00000006147	fgf10b (ENSPNYG00000005984)	paip1 (ENSPNYG00000005916)	ITGA2 (ENSPNYG00000005632)	fsta (ENSPNYG00000005552)	ndufs4 (ENSPNYG00000005530)	arl15a (ENSPNYG00000005508)	SNX18 (ENSPNYG00000005501)	ENSPNYG00000005487	si:dkey-193c22.1 (ENSPNYG00000005452)	lipg (ENSPNYG00000005409)	KCMF1 (ENSPNYG00000005360)	slc20a2 (ENSPNYG00000005298)
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000153288.b	ENSGT00390000004228	ENSGT00940000180287	ENSGT00940000155831.bb	ENSGT00940000155776.b	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682.m.b #23	ENSGT00940000161682.m.a #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00940000156303	ENSGT00940000157072.b.b	ENSGT00390000013835	ENSGT00940000156244.a.a	ENSGT00940000157724.a.a	ENSGT00940000154091.a.a.s.a	ENSGT00500000045469	ENSGT00940000159394	ENSGT00510000047171.z
Eastern happy	MODERN SPECIES	3	snap29 (ENSACLG00000010296)	ENSACLG00000010289	serpind1 (ENSACLG00000010287)	pi4kab (ENSACLG00000010239)	hic1l (ENSACLG00000010236)	ENSACLG00000010227	PRADC1 (ENSACLG00000010221)	ENSACLG00000010199	ENSACLG00000010193	utp15 (ENSACLG00000010164)	ENSACLG00000010152	ENSACLG00000010150	ENSACLG00000010074	ENSACLG00000009835	ykt6 (ENSACLG00000009816) #21	gck (ENSACLG00000009790) #22	myl7 (ENSACLG00000009547) #23	myl7 (ENSACLG00000009528) #23	agpat9l (ENSACLG00000009507)	ENSACLG00000009469	fgf10b (ENSACLG00000009462)	paip1 (ENSACLG00000009431)	ITGA2 (ENSACLG00000009204)	fsta (ENSACLG00000009177)	ndufs4 (ENSACLG00000009167)	arl15a (ENSACLG00000009104)	SNX18 (ENSACLG00000008830)	ENSACLG00000008822	si:dkey-193c22.1 (ENSACLG00000008814)	lipg (ENSACLG00000008808)	KCMF1 (ENSACLG00000008781)
Zebra mbuna	MODERN SPECIES	1094	PLAT (ENSMZEG00005010075)	CLTCL1 (ENSMZEG00005010116)	SLC25A1 (ENSMZEG00005010261)	ENSMZEG00005010284	snap29 (ENSMZEG00005010307)	pi4kab (ENSMZEG00005010344)	serpind1 (ENSMZEG00005010423)	hic1l (ENSMZEG00005010459)	PRADC1 (ENSMZEG00005010476)	ENSMZEG00005010488	ENSMZEG00005010527	utp15 (ENSMZEG00005010536)	ENSMZEG00005010602	ENSMZEG00005010671	ENSMZEG00005010680	gck (ENSMZEG00005010696) #22	ykt6 (ENSMZEG00005010738) #21	myl7 (ENSMZEG00005010837) #23	myl7 (ENSMZEG00005010844) #23	agpat9l (ENSMZEG00005010852)	ENSMZEG00005010870	fgf10b (ENSMZEG00005010917)	paip1 (ENSMZEG00005012328)	ITGA2 (ENSMZEG00005012356)	fsta (ENSMZEG00005012381)	ndufs4 (ENSMZEG00005012399)	arl15a (ENSMZEG00005012417)	SNX18 (ENSMZEG00005012427)	ENSMZEG00005012440	si:dkey-193c22.1 (ENSMZEG00005012454)	lipg (ENSMZEG00005012484)
Lyretail cichlid	MODERN SPECIES	306	PLAT (ENSNBRG00000020229)	CLTCL1 (ENSNBRG00000020329)	SLC25A1 (ENSNBRG00000020414)	ENSNBRG00000020444	snap29 (ENSNBRG00000020461)	pi4kab (ENSNBRG00000020474)	serpind1 (ENSNBRG00000020574)	hic1l (ENSNBRG00000020589)	PRADC1 (ENSNBRG00000020597)	ENSNBRG00000020628	ENSNBRG00000020640	utp15 (ENSNBRG00000020654)	ENSNBRG00000020708	ENSNBRG00000020790	ykt6 (ENSNBRG00000020847) #21	gck (ENSNBRG00000020875) #22	myl7 (ENSNBRG00000020893) #23	myl7 (ENSNBRG00000020909) #23	agpat9l (ENSNBRG00000020920)	ENSNBRG00000020973	fgf10b (ENSNBRG00000021129)	paip1 (ENSNBRG00000021188)	ITGA2 (ENSNBRG00000021238)	fsta (ENSNBRG00000021373)	ndufs4 (ENSNBRG00000021396)	arl15a (ENSNBRG00000021415)	SNX18 (ENSNBRG00000021431)	ENSNBRG00000021438	si:dkey-193c22.1 (ENSNBRG00000021462)	lipg (ENSNBRG00000021498)	KCMF1 (ENSNBRG00000021533)
Nile tilapia	MODERN SPECIES	3	CLTCL1 (ENSONIG00000014354)	SLC25A1 (ENSONIG00000014353)	ENSONIG00000033773	snap29 (ENSONIG00000028811)	pi4kab (ENSONIG00000014336)	serpind1 (ENSONIG00000014348)	hic1l (ENSONIG00000039232)	PRADC1 (ENSONIG00000014334)	ENSONIG00000014332	ENSONIG00000014330	utp15 (ENSONIG00000014323)	ENSONIG00000040471	ENSONIG00000038906	ENSONIG00000014310	ykt6 (ENSONIG00000014307) #21	gck (ENSONIG00000014301) #22	myl7 (ENSONIG00000030579) #23	myl7 (ENSONIG00000036418) #23	agpat9l (ENSONIG00000014299)	ENSONIG00000014291	fgf10b (ENSONIG00000043120)	paip1 (ENSONIG00000014285)	ITGA2 (ENSONIG00000014276)	ENSONIG00000028323	fsta (ENSONIG00000014274)	ndufs4 (ENSONIG00000034325)	arl15a (ENSONIG00000035372)	SNX18 (ENSONIG00000014269)	ENSONIG00000014267	lipg (ENSONIG00000014262)	KCMF1 (ENSONIG00000014257)
Tiger tail seahorse	MODERN SPECIES	67	CLTCL1 (ENSHCOG00000007371)	SLC25A1 (ENSHCOG00000007258)	ENSHCOG00000007253	ENSHCOG00000007243	snap29 (ENSHCOG00000007224)	ENSHCOG00000007194	serpind1 (ENSHCOG00000007153)	ENSHCOG00000007144	ENSHCOG00000007095	ENSHCOG00000007059	btf3 (ENSHCOG00000006829)	utp15 (ENSHCOG00000006823)	ENSHCOG00000006790	ENSHCOG00000006786	ykt6 (ENSHCOG00000006764) #21	gck (ENSHCOG00000006726) #22	myl7 (ENSHCOG00000006707) #23	agpat9l (ENSHCOG00000006695)	si:ch73-130a3.4 (ENSHCOG00000006661)	ENSHCOG00000006628	fgf10b (ENSHCOG00000006595)	paip1 (ENSHCOG00000006548)	ITGA2 (ENSHCOG00000006533)	fsta (ENSHCOG00000006526)	ndufs4 (ENSHCOG00000006498)	arl15a (ENSHCOG00000006477)	SNX18 (ENSHCOG00000006371)	ENSHCOG00000006362	lipg (ENSHCOG00000006354)	KCMF1 (ENSHCOG00000006345)	slc20a2 (ENSHCOG00000006318)
Pinecone sodierfish	MODERN SPECIES	23	PLAT (ENSMMDG00005011138)	CLTCL1 (ENSMMDG00005011311)	SLC25A1 (ENSMMDG00005017083)	ENSMMDG00005017085	snap29 (ENSMMDG00005017086)	pi4kab (ENSMMDG00005017158)	serpind1 (ENSMMDG00005017472)	HIC2 (ENSMMDG00005017473)	PRADC1 (ENSMMDG00005017474)	ENSMMDG00005017476	ENSMMDG00005017479	utp15 (ENSMMDG00005017484)	ENSMMDG00005017490	ENSMMDG00005017492	ykt6 (ENSMMDG00005017495) #21	gck (ENSMMDG00005017499) #22	myl7 (ENSMMDG00005017591) #23	agpat9l (ENSMMDG00005017608)	ENSMMDG00005017719	fgf10b (ENSMMDG00005017724)	paip1 (ENSMMDG00005017753)	ITGA2 (ENSMMDG00005017871)	fsta (ENSMMDG00005017898)	ndufs4 (ENSMMDG00005017904)	arl15a (ENSMMDG00005017906)	SNX18 (ENSMMDG00005017909)	ENSMMDG00005017911	lipg (ENSMMDG00005017912)	KCMF1 (ENSMMDG00005017915)	slc20a2 (ENSMMDG00005017918)	ENSMMDG00005017935
Cod	MODERN SPECIES	2	ENSGMOG00000016661	lsm1 (ENSGMOG00000030779)	bag4 (ENSGMOG00000029455)	ENSGMOG00000016629	ENSGMOG00000016607	carnmt1 (ENSGMOG00000016586)	ENSGMOG00000016568	ENSGMOG00000026000	ENSGMOG00000036726	ENSGMOG00000007232	ENSGMOG00000031152	ENSGMOG00000007246	ENSGMOG00000007251	ENSGMOG00000007258	YKT6 (ENSGMOG00000007299) #21	ENSGMOG00000027785 #22	MYL7 (ENSGMOG00000007319) #23	agpat9l (ENSGMOG00000007328)	ENSGMOG00000007338	fgf10b (ENSGMOG00000033003)	paip1 (ENSGMOG00000007366)	ITGA2 (ENSGMOG00000007378)	FST (ENSGMOG00000007399)	NDUFS4 (ENSGMOG00000007403)	arl15a (ENSGMOG00000007408)	SNX18 (ENSGMOG00000007416)	ENSGMOG00000007426	lipg (ENSGMOG00000007449)	ENSGMOG00000007459	ENSGMOG00000028895	ENSGMOG00000004609
Protacanthopterygii	ANCESTRAL SPECIES	102	ENSGT00550000074846.mb.b	ENSGT00940000156730.a	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a	ENSGT00940000158107.a.b	ENSGT00940000158936	ENSGT00730000111133.w	ENSGT00940000164321.c	ENSGT00940000155477	ENSGT00390000009488	ENSGT00940000158323.h #25	ENSGT00390000006780 #24	ENSGT00940000159904 #18	ENSGT00390000015164 #21	ENSGT00950000182787.E.d.e.b #22	ENSGT00940000161682 #23	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000155855	ENSGT00940000158907.d	ENSGT00940000153432.B	ENSGT00500000044987
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	315	ENSGT00940000156997.a.f	ENSGT00550000074846.mb.b.b	ENSGT00940000156730.a.d	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a.e	ENSGT00940000158107.a.b	ENSGT00940000158936.e	ENSGT00730000111133.w.b	ENSGT00940000164321.c.h	ENSGT00940000155477.g	ENSGT00390000009488.d	ENSGT00940000158323.h.l #25	ENSGT00390000006780 #24	ENSGT00390000015164.bb.b #21	ENSGT00950000182787.E.d.e.b.g #22	ENSGT00940000161682.g #23	ENSGT01030000234574.B.c.b.a.a.b.d	ENSGT00940000155855.f	ENSGT00940000158907.d.e.b	ENSGT00940000153432.B.yb	ENSGT00500000044987	ENSGT00530000063460.A.b.l	ENSGT01050000244838.H.c.a.g	ENSGT00390000009065	ENSGT00940000155496.a.a.e.b	ENSGT00730000113416	ENSGT00390000005250	ENSGT00940000158126.a	ENSGT00940000157140.a.c	ENSGT00640000091523
Salmoninae_a	ANCESTRAL SPECIES	31	ENSGT00940000156997.a.f	ENSGT00550000074846.mb.b.b	ENSGT00940000156730.a.d	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a.e	ENSGT00940000158107.a.b	ENSGT00940000158936.e	ENSGT00730000111133.w.b	ENSGT00940000164321.c.h	ENSGT00940000155477.g	ENSGT00390000009488.d	ENSGT00940000158323.h.l #25	ENSGT00390000006780 #24	ENSGT00390000015164.bb.b #21	ENSGT00950000182787.E.d.e.b.g #22	ENSGT00940000161682.g #23	ENSGT01030000234574.B.c.b.a.a.b.d	ENSGT00940000155855.f	ENSGT00940000158907.d.e.b	ENSGT00940000153432.B.yb	ENSGT00500000044987	ENSGT00530000063460.A.b.l	ENSGT01050000244838.H.c.a.g	ENSGT00390000009065	ENSGT00940000165045.h	ENSGT00940000155496.a.a.e.b	ENSGT00730000113416	ENSGT00390000005250	ENSGT00940000158126.a	ENSGT00940000157140.a.c
Salmo	ANCESTRAL SPECIES	19	ENSGT00940000156997.a.f	ENSGT00550000074846.mb.b.b	ENSGT00940000156730.a.d	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a.e	ENSGT00940000158107.a.b	ENSGT00940000158936.e	ENSGT00730000111133.w.b	ENSGT00940000164321.c.h	ENSGT00940000155477.g	ENSGT00390000009488.d	ENSGT00940000158323.h.l #25	ENSGT00390000006780 #24	ENSGT00390000015164.bb.b #21	ENSGT00950000182787.E.d.e.b.g #22	ENSGT00940000161682.g #23	ENSGT01030000234574.B.c.b.a.a.b.d	ENSGT00940000155855.f	ENSGT00940000158907.d.e.b	ENSGT00940000153432.B.yb	ENSGT00500000044987	ENSGT00530000063460.A.b.l	ENSGT00390000002096.t.b	ENSGT01050000244838.H.c.a.g	ENSGT00390000009065	ENSGT00940000165045.h	ENSGT00940000155496.a.a.e.b	ENSGT00730000113416	ENSGT00940000158126.a	ENSGT00940000157140.a.c
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000074629	ENSSSAG00000086212	ENSSSAG00000074591	ENSSSAG00000059101	ENSSSAG00000112259	ENSSSAG00000074579	ENSSSAG00000074573	bag4 (ENSSSAG00000085578)	lsm1 (ENSSSAG00000074566)	ENSSSAG00000074132	star (ENSSSAG00000074097)	ENSSSAG00000074092	ENSSSAG00000086039 #25	pold2 (ENSSSAG00000074050) #24	YKT6 (ENSSSAG00000074040) #21	ENSSSAG00000073606 #22	MYL7 (ENSSSAG00000096767) #23	agpat9l (ENSSSAG00000073531)	ENSSSAG00000072243	fgf10 (ENSSSAG00000072191)	paip1 (ENSSSAG00000071103)	ENSSSAG00000094148	ENSSSAG00000071907	ELOVL7 (ENSSSAG00000072268)	ENSSSAG00000071591	ENSSSAG00000071580	ZSWIM6 (ENSSSAG00000072303)	ENSSSAG00000071575	pgm5 (ENSSSAG00000112860)	foxd5 (ENSSSAG00000094357)	cbwd (ENSSSAG00000084581)
River trout	MODERN SPECIES	39	RNF165 (ENSSTUG00000029167)	atp5fa1 (ENSSTUG00000029001)	ENSSTUG00000028990	ENSSTUG00000028961	RNF122 (ENSSTUG00000028953)	ENSSTUG00000028900	DUSP26 (ENSSTUG00000028885)	bag4 (ENSSTUG00000028877)	lsm1 (ENSSTUG00000028860)	ENSSTUG00000028275	star (ENSSTUG00000028236)	ELMOD3 (ENSSTUG00000028216)	AEBP1 (ENSSTUG00000028168) #25	pold2 (ENSSTUG00000028097) #24	YKT6 (ENSSTUG00000028077) #21	gck (ENSSTUG00000026872) #22	myl7 (ENSSTUG00000026837) #23	agpat9l (ENSSTUG00000025830)	ENSSTUG00000025280	fgf10b (ENSSTUG00000025125)	paip1 (ENSSTUG00000025029)	zgc:153352 (ENSSTUG00000025002)	ENSSTUG00000024964	elovl7a (ENSSTUG00000024948)	ercc8 (ENSSTUG00000024879)	smim15 (ENSSTUG00000024868)	ZSWIM6 (ENSSTUG00000024131)	ENSSTUG00000024102	pgm5 (ENSSTUG00000023828)	foxd5 (ENSSTUG00000023817)	cbwd (ENSSTUG00000023802)
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000156997.a.f	ENSGT00550000074846.mb.b.b.a.a	ENSGT00940000156730.a.d	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a.e	ENSGT00940000158107.a.b	ENSGT00940000158936.e	ENSGT00730000111133.w.b	ENSGT00940000164321.c.h	ENSGT00940000155477.g	ENSGT00390000009488.d	ENSGT00940000158323.h.l #25	ENSGT00390000006780 #24	ENSGT00390000015164.bb.b #21	ENSGT00950000182787.E.d.e.b.g #22	ENSGT00940000161682.g #23	ENSGT01030000234574.B.c.b.a.a.b.d	ENSGT00940000155855.f	ENSGT00940000158907.d.e.b	ENSGT00940000153432.B.yb	ENSGT00500000044987	ENSGT00530000063460.A.b.l	ENSGT01050000244838.H.c.a.g	ENSGT00390000009065	ENSGT01000000220237	ENSGT00940000165045.h	ENSGT00940000155496.a.a.e.b	ENSGT00390000005250	ENSGT00940000158126.a	ENSGT00940000157140.a.c
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00390000005254.c.b.a	ENSGT00940000156997.a.f	ENSGT00550000074846.mb.b.b.a.a	ENSGT00940000156730.a.d	ENSGT01050000244968.c.d	ENSGT00940000159152.d.j.b	ENSGT00490000043388.a.e	ENSGT00940000158107.a.b	ENSGT00940000158936.e	ENSGT00730000111133.w.b	ENSGT00940000164321.c.h	ENSGT00390000009488.d	ENSGT00940000158323.h.l #25	ENSGT00390000006780 #24	ENSGT00390000015164.bb.b #21	ENSGT00950000182787.E.d.e.b.g #22	ENSGT00940000161682.g #23	ENSGT01030000234574.B.c.b.a.a.b.d	ENSGT00940000155855.f	ENSGT00940000158907.d.e.b	ENSGT00940000153432.B.yb	ENSGT00500000044987	ENSGT00530000063460.A.b.l	ENSGT01050000244838.H.c.a.g	ENSGT00390000009065	ENSGT01000000220237	ENSGT00940000165045.h	ENSGT00940000155496.a.a.e.b	ENSGT00730000113416	ENSGT00940000158126.a	ENSGT00940000157140.a.c
Chinook salmon	MODERN SPECIES	3	RNF165 (ENSOTSG00005018537)	atp5fa1 (ENSOTSG00005018541)	ENSOTSG00005018963	ENSOTSG00005018964	ENSOTSG00005018970	RNF122 (ENSOTSG00005018971)	ENSOTSG00005018973	DUSP26 (ENSOTSG00005018974)	bag4 (ENSOTSG00005018975)	lsm1 (ENSOTSG00005018976)	ENSOTSG00005018977	ELMOD3 (ENSOTSG00005018979)	AEBP1 (ENSOTSG00005027885) #25	pold2 (ENSOTSG00005027888) #24	YKT6 (ENSOTSG00005027890) #21	gck (ENSOTSG00005027895) #22	myl7 (ENSOTSG00005028961) #23	agpat9l (ENSOTSG00005028963)	ENSOTSG00005029052	fgf10b (ENSOTSG00005029067)	paip1 (ENSOTSG00005029068)	zgc:153352 (ENSOTSG00005029071)	elovl7a (ENSOTSG00005029081)	ENSOTSG00005029084	ercc8 (ENSOTSG00005029088)	ENSOTSG00005029100	smim15 (ENSOTSG00005029103)	ENSOTSG00005029104	PTCH1 (ENSOTSG00005029113)	ENSOTSG00005029193	hsd17b3 (ENSOTSG00005029195)
Coho salmon	MODERN SPECIES	28	ATP5F1A (ENSOKIG00005039491)	ENSOKIG00005040496	ENSOKIG00005040522	RNF122 (ENSOKIG00005040732)	ENSOKIG00005040860	DUSP26 (ENSOKIG00005040960)	ENSOKIG00005040971	bag4 (ENSOKIG00005041005)	lsm1 (ENSOKIG00005041009)	ENSOKIG00005041043	ELMOD3 (ENSOKIG00005041120)	ENSOKIG00005041172 #25	pold2 (ENSOKIG00005041189) #24	YKT6 (ENSOKIG00005041266) #21	ENSOKIG00005041297	GCK (ENSOKIG00005041341) #22	MYL7 (ENSOKIG00005041604) #23	agpat9l (ENSOKIG00005041752)	ENSOKIG00005042476	ENSOKIG00005043818	fgf10b (ENSOKIG00005043827)	paip1 (ENSOKIG00005043915)	zgc:153352 (ENSOKIG00005043994)	ENSOKIG00005044011	ENSOKIG00005044016	elovl7a (ENSOKIG00005044030)	ercc8 (ENSOKIG00005044069)	ENSOKIG00005044135	ENSOKIG00005044148	smim15 (ENSOKIG00005044201)	ZSWIM6 (ENSOKIG00005044225)
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000019010	ENSOMYG00000018943	ENSOMYG00000018911	ENSOMYG00000018899	ENSOMYG00000018868	ENSOMYG00000018849	bag4 (ENSOMYG00000018847)	lsm1 (ENSOMYG00000018837)	ENSOMYG00000018823	ENSOMYG00000022324	star (ENSOMYG00000061703)	ENSOMYG00000018796	ENSOMYG00000018755 #25	ENSOMYG00000018746 #24	YKT6 (ENSOMYG00000018727) #21	ENSOMYG00000018700 #22	MYL7 (ENSOMYG00000018658) #23	agpat9l (ENSOMYG00000018386)	ENSOMYG00000018245	fgf10b (ENSOMYG00000018222)	paip1 (ENSOMYG00000018205)	zgc:153352 (ENSOMYG00000018198)	ENSOMYG00000018185	ENSOMYG00000048134	elovl7a (ENSOMYG00000018166)	ENSOMYG00000056625	ercc8 (ENSOMYG00000017913)	ENSOMYG00000017878	smim15 (ENSOMYG00000017872)	ENSOMYG00000017861	TMEM252 (ENSOMYG00000017851)
Huchen	MODERN SPECIES	2730													AEBP1 (ENSHHUG00000051079) #25	pold2 (ENSHHUG00000051084) #24	YKT6 (ENSHHUG00000051087) #21	gck (ENSHHUG00000051102) #22	myl7 (ENSHHUG00000051114) #23	ENSHHUG00000051119	ENSHHUG00000051176
Salmoninae	ANCESTRAL SPECIES	37	ENSGT00390000005254.c.b.b	ENSGT00390000018830.a.a	ENSGT00940000156997.a.e	ENSGT00550000074846.mb.b.a	ENSGT00940000156730.a.c	ENSGT00940000159152.d.j.a	ENSGT00490000043388.a.f	ENSGT00940000158936.f	ENSGT00730000111133.w.a	ENSGT00940000164321.c.g	ENSGT00940000155477.h	ENSGT00390000009488.c	ENSGT00940000158323.h.k #25	ENSGT00940000159904 #18	ENSGT00390000015164.bb.a #21	ENSGT00950000182787.E.d.e.b.h #22	ENSGT00940000161682.h #23	ENSGT01030000234574.B.c.b.a.a.b.c	ENSGT00940000155855.e	ENSGT00940000158907.d.e.a	ENSGT00940000153432.B.xb	ENSGT00390000002096.t	ENSGT01050000244838.H.c.a.h	ENSGT01030000236259	ENSGT00390000002743	ENSGT00940000165045	ENSGT00940000155496.a.a.e.a	ENSGT00940000158126.b	ENSGT00940000157140.a.d	ENSGT00940000164995	ENSGT00940000155876.kb
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000165146	ENSGT00390000018830.a.a	ENSGT00940000156997.a.e	ENSGT00550000074846.mb.b.a	ENSGT00940000156730.a.c	ENSGT00940000159152.d.j.a	ENSGT00490000043388.a.f	ENSGT00940000158936.f	ENSGT00730000111133.w.a	ENSGT00940000164321.c.g	ENSGT00940000155477.h	ENSGT00390000009488.c	ENSGT00940000158323.h.k #25	ENSGT00940000159904 #18	ENSGT00390000015164.bb.a #21	ENSGT00950000182787.E.d.e.b.h #22	ENSGT00940000161682.h #23	ENSGT01030000234574.B.c.b.a.a.b.c	ENSGT00940000155855.e	ENSGT00940000158907.d.e.a	ENSGT00940000153432.B.xb	ENSGT00390000002096.t	ENSGT01050000244838.H.c.a.h	ENSGT01030000236259	ENSGT00390000002743	ENSGT00940000165045.g	ENSGT00940000155496.a.a.e.a	ENSGT00940000158126.b	ENSGT00940000157140.a.d	ENSGT00940000164995	ENSGT00940000155876.kb
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000018830.a.a	ENSGT00940000156997.a.e	ENSGT00550000074846.mb.b.a	ENSGT00940000156730.a.c	ENSGT00940000159152.d.j.a	ENSGT00490000043388.a.f	ENSGT01000000222022	ENSGT00940000158936.f	ENSGT00730000111133.w.a	ENSGT00940000164321.c.g	ENSGT00940000155477.h	ENSGT00390000009488.c	ENSGT00940000158323.h.k #25	ENSGT00940000159904 #18	ENSGT00390000015164.bb.a #21	ENSGT00950000182787.E.d.e.b.h #22	ENSGT00940000161682.h #23	ENSGT01030000234574.B.c.b.a.a.b.c	ENSGT00940000155855.e	ENSGT00940000158907.d.e.a	ENSGT00940000153432.B.xb	ENSGT00390000002096.t	ENSGT01050000244838.H.c.a.h	ENSGT01030000236259	ENSGT00390000002743	ENSGT00940000165045.g	ENSGT00940000155496.a.a.e.a	ENSGT00990000213857	ENSGT00940000158126.b	ENSGT00940000157140.a.d	ENSGT00940000164995
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000018830.a.a	ENSGT00940000156997.a.e	ENSGT00550000074846.mb.b.a	ENSGT00940000156730.a.c	ENSGT00940000159152.d.j.a	ENSGT00490000043388.a.f	ENSGT01000000222022	ENSGT00940000158936.f	ENSGT00730000111133.w.a	ENSGT00940000164321.c.g	ENSGT00940000155477.h	ENSGT00390000009488.c	ENSGT00940000158323.h.k #25	ENSGT00940000159904 #18	ENSGT00390000015164.bb.a #21	ENSGT00950000182787.E.d.e.b.h #22	ENSGT00940000161682.h #23	ENSGT01030000234574.B.c.b.a.a.b.c	ENSGT00940000155855.e	ENSGT00940000158907.d.e.a	ENSGT00940000153432.B.xb	ENSGT00390000002096.t	ENSGT01050000244838.H.c.a.h	ENSGT01030000236259	ENSGT00390000002743	ENSGT00940000165045.g	ENSGT00940000155496.a.a.e.a	ENSGT00990000213857.b	ENSGT00940000158126.b	ENSGT00940000157140.a.d	ENSGT00990000213857.a
Coho salmon	MODERN SPECIES	22	ptger4a (ENSOKIG00005021072)	ENSOKIG00005021045	LOXHD1 (ENSOKIG00005020822)	RNF165 (ENSOKIG00005020790)	ATP5F1A (ENSOKIG00005020591)	ENSOKIG00005020566	ENSOKIG00005020545	bag4 (ENSOKIG00005020535)	lsm1 (ENSOKIG00005020519)	ENSOKIG00005020514	ENSOKIG00005019969	ELMOD3 (ENSOKIG00005019932)	ENSOKIG00005019898 #25	NPC1L1 (ENSOKIG00005017077) #18	YKT6 (ENSOKIG00005016913) #21	gck (ENSOKIG00005016659) #22	myl7 (ENSOKIG00005016595) #23	ENSOKIG00005025424	ENSOKIG00005023164	ENSOKIG00005022644	RICTOR (ENSOKIG00005021759)	elovl7a (ENSOKIG00005021677)	ENSOKIG00005021632	ndufaf2 (ENSOKIG00005021590)	smim15 (ENSOKIG00005021579)	ENSOKIG00005021569	ZSWIM6 (ENSOKIG00005021167)	pgm5 (ENSOKIG00005020728)	foxd5 (ENSOKIG00005020704)	ENSOKIG00005020696	ENSOKIG00005020686
Chinook salmon	MODERN SPECIES	28	LOXHD1 (ENSOTSG00005045253)	RNF165 (ENSOTSG00005045247)	atp5fa1 (ENSOTSG00005044902)	ENSOTSG00005044896	RNF122 (ENSOTSG00005044895)	ENSOTSG00005044894	ENSOTSG00005044893	bag4 (ENSOTSG00005044892)	lsm1 (ENSOTSG00005044890)	ENSOTSG00005044852	star (ENSOTSG00005044851)	ELMOD3 (ENSOTSG00005044850)	ENSOTSG00005044849 #25	NPC1L1 (ENSOTSG00005044339) #18	YKT6 (ENSOTSG00005044334) #21	gck (ENSOTSG00005044327) #22	myl7 (ENSOTSG00005044325) #23	agpat9l (ENSOTSG00005042899)	ENSOTSG00005042516	fgf10b (ENSOTSG00005042502)	paip1 (ENSOTSG00005042449)	RICTOR (ENSOTSG00005042313)	ENSOTSG00005042305	elovl7a (ENSOTSG00005042304)	ndufaf2 (ENSOTSG00005042303)	smim15 (ENSOTSG00005042302)	ZSWIM6 (ENSOTSG00005042237)	ENSOTSG00005042225	pgm5 (ENSOTSG00005041696)	foxd5 (ENSOTSG00005041691)	ENSOTSG00005041690
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000029710	ENSOMYG00000028554	ENSOMYG00000029681	ENSOMYG00000028166	ENSOMYG00000028143	ENSOMYG00000028118	bag4 (ENSOMYG00000028099)	ENSOMYG00000062308	LSM1 (ENSOMYG00000071392)	ENSOMYG00000074930	star (ENSOMYG00000035407)	ENSOMYG00000035401	ENSOMYG00000035386 #25	ENSOMYG00000033686 #18	YKT6 (ENSOMYG00000033499) #21	gk (ENSOMYG00000033432) #22	MYL7 (ENSOMYG00000033393) #23	agpat9l (ENSOMYG00000031796)	ENSOMYG00000031003	fgf10b (ENSOMYG00000030701)	fgf10b (ENSOMYG00000076677)	paip1 (ENSOMYG00000030661)	ENSOMYG00000029326	elovl7a (ENSOMYG00000028454)	ENSOMYG00000028417	NDUFAF2 (ENSOMYG00000028389)	smim15 (ENSOMYG00000028384)	ZSWIM6 (ENSOMYG00000027250)	ENSOMYG00000026980	pgm5 (ENSOMYG00000026927)	foxd5 (ENSOMYG00000026803)
Salmo	ANCESTRAL SPECIES		ENSGT01050000244902.a.a.a.a.a.b.e	ENSGT00940000165146	ENSGT00390000018830.a.a	ENSGT00940000156997.a.e	ENSGT00550000074846.mb.b.a	ENSGT00940000156730.a.c	ENSGT00940000159152.d.j.a	ENSGT00940000158936.f	ENSGT00730000111133.w.a	ENSGT00940000164321.c.g	ENSGT00940000155477.h	ENSGT00390000009488.c	ENSGT00940000158323.h.k.b #25	ENSGT00940000159904 #18	ENSGT00390000015164.bb.a #21	ENSGT00950000182787.E.d.e.b.h #22	ENSGT00940000161682.h #23	ENSGT01030000234574.B.c.b.a.a.b.c	ENSGT00940000155855.e	ENSGT00940000158907.d.e.a	ENSGT00940000153432.B.xb	ENSGT00390000002096.t.a	ENSGT01050000244838.H.c.a.h	ENSGT01030000236259	ENSGT00390000002743	ENSGT00940000165045.g	ENSGT00940000155496.a.a.e.a	ENSGT00940000158126.b	ENSGT00940000157140.a.d	ENSGT00990000211860	ENSGT00940000164995
Atlantic salmon	MODERN SPECIES	16	ENSSSAG00000066161	ENSSSAG00000066826	ENSSSAG00000066831	bag4 (ENSSSAG00000105729)	LSM1 (ENSSSAG00000066840)	ENSSSAG00000066875	star (ENSSSAG00000068626)	ENSSSAG00000083257	ENSSSAG00000074071 #25	ENSSSAG00000110254 #25	ENSSSAG00000082418 #25	ENSSSAG00000069530 #25	ENSSSAG00000113312 #25	ENSSSAG00000068699 #18	YKT6 (ENSSSAG00000069439) #21	ENSSSAG00000069485 #22	MYL7 (ENSSSAG00000069427) #23	agpat9l (ENSSSAG00000111274)	ENSSSAG00000070579	ENSSSAG00000105559	fgf10b (ENSSSAG00000071095)	paip1 (ENSSSAG00000072112)	ENSSSAG00000071324	elovl7a (ENSSSAG00000082300)	ENSSSAG00000072275	NDUFAF2 (ENSSSAG00000084139)	smim15 (ENSSSAG00000093113)	ENSSSAG00000084383	ZSWIM6 (ENSSSAG00000053724)	ENSSSAG00000086947	ENSSSAG00000081761
River trout	MODERN SPECIES	19	rpl37 (ENSSTUG00000021262)	LOXHD1 (ENSSTUG00000021308)	RNF165 (ENSSTUG00000021753)	atp5fa1 (ENSSTUG00000021824)	ENSSTUG00000023280	RNF122 (ENSSTUG00000023291)	bag4 (ENSSTUG00000023297)	lsm1 (ENSSTUG00000023306)	ENSSTUG00000023332	star (ENSSTUG00000023455)	ELMOD3 (ENSSTUG00000023475)	AEBP1 (ENSSTUG00000023503) #25	AEBP1 (ENSSTUG00000023548) #25	NPC1L1 (ENSSTUG00000023727) #18	YKT6 (ENSSTUG00000028282) #21	gck (ENSSTUG00000028305) #22	myl7 (ENSSTUG00000028587) #23	agpat9l (ENSSTUG00000028695)	ENSSTUG00000028967	fgf10b (ENSSTUG00000029685)	paip1 (ENSSTUG00000029692)	RICTOR (ENSSTUG00000029834)	elovl7a (ENSSTUG00000031704)	ENSSTUG00000031723	NDUFAF2 (ENSSTUG00000031740)	smim15 (ENSSTUG00000031759)	ZSWIM6 (ENSSTUG00000031793)	pgm5 (ENSSTUG00000032393)	foxd5 (ENSSTUG00000032568)	ENSSTUG00000032591	ENSSTUG00000032653
Huchen	MODERN SPECIES	213	ENSHHUG00000007379	ENSHHUG00000007328	RNF165 (ENSHHUG00000007320)	atp5fa1 (ENSHHUG00000006983)	ENSHHUG00000006964	RNF122 (ENSHHUG00000006953)	ENSHHUG00000006940	bag4 (ENSHHUG00000006925)	lsm1 (ENSHHUG00000006919)	ENSHHUG00000006880	star (ENSHHUG00000006835)	ELMOD3 (ENSHHUG00000006820)	ENSHHUG00000006785 #25	NPC1L1 (ENSHHUG00000005877) #18	YKT6 (ENSHHUG00000005821) #21	gck (ENSHHUG00000005707) #22	myl7 (ENSHHUG00000005657) #23	agpat9l (ENSHHUG00000005563)	ENSHHUG00000005505	fgf10b (ENSHHUG00000005473)	paip1 (ENSHHUG00000005458)	RICTOR (ENSHHUG00000005173)	elovl7a (ENSHHUG00000005161)	ndufaf2 (ENSHHUG00000005153)	ZSWIM6 (ENSHHUG00000005021)	pgm5 (ENSHHUG00000004937)	ENSHHUG00000004911	ENSHHUG00000003332	AOPEP (ENSHHUG00000003315)
Northern pike	MODERN SPECIES	12	ENSELUG00000033195	TRAF2 (ENSELUG00000004384)	ENSELUG00000027576	tncb (ENSELUG00000004262)	ENSELUG00000004183	ENSELUG00000004159	nsmfb (ENSELUG00000004102)	ENSELUG00000004056	PNPLA7 (ENSELUG00000004035)	mrpl41 (ENSELUG00000004010)	ELMOD3 (ENSELUG00000003998)	AEBP1 (ENSELUG00000003969) #25	pold2 (ENSELUG00000003947) #24	NPC1L1 (ENSELUG00000003914) #18	ykt6 (ENSELUG00000003880) #21	gck (ENSELUG00000003857) #22	myl7 (ENSELUG00000003814) #23	agpat9l (ENSELUG00000003774)	ENSELUG00000003726	fgf10b (ENSELUG00000003653)	paip1 (ENSELUG00000003634)	zgc:153352 (ENSELUG00000003603)	ENSELUG00000003591	RICTOR (ENSELUG00000003552)	CARD9 (ENSELUG00000003496)	ENSELUG00000003464	entr1 (ENSELUG00000003431)	chek2 (ENSELUG00000003419)	gstt2 (ENSELUG00000003405)	slc2a11b (ENSELUG00000003390)	si:dkey-98f17.5 (ENSELUG00000003365)
Spotted gar	MODERN SPECIES	647	mpx (ENSLOCG00000015220)	ENSLOCG00000015217	usp39 (ENSLOCG00000015215)	mat2ab (ENSLOCG00000015213)	GGCX (ENSLOCG00000015209)	STARD7 (ENSLOCG00000015208)	tmem127 (ENSLOCG00000015207)	ciao1 (ENSLOCG00000015205)	snrnp200 (ENSLOCG00000015198)	slc20a1b (ENSLOCG00000015194)	nt5c2l1 (ENSLOCG00000015189)	tmed4 (ENSLOCG00000015187) #16	ddx56 (ENSLOCG00000015185) #17	NPC1L1 (ENSLOCG00000015181) #18	ykt6 (ENSLOCG00000015179) #21	gck (ENSLOCG00000015175) #22	myl7 (ENSLOCG00000015174) #23	pold2 (ENSLOCG00000015171) #24	aebp1a (ENSLOCG00000015167) #25	ELMOD3 (ENSLOCG00000015165)	ash2l (ENSLOCG00000015161)	star (ENSLOCG00000015158)	grk5 (ENSLOCG00000015151)	lsm1 (ENSLOCG00000015149)	bag4 (ENSLOCG00000015148)	DUSP26 (ENSLOCG00000015143)	ENSLOCG00000015140	RNF122 (ENSLOCG00000015139)	mak16 (ENSLOCG00000015135)	TTI2 (ENSLOCG00000015132)	SLC18A1 (ENSLOCG00000015125)
Reedfish	MODERN SPECIES		zgc:162193 (ENSECRG00000000344)	ENSECRG00000000343	ENSECRG00000000342	arl2 (ENSECRG00000000341)	ENSECRG00000000340	ENSECRG00000000339	naaladl1 (ENSECRG00000000338)	yif1a (ENSECRG00000000337)	ENSECRG00000000336	TMEM151A (ENSECRG00000000335)	nt5c2l1 (ENSECRG00000000334)	tmed4 (ENSECRG00000000333) #16	ddx56 (ENSECRG00000000332) #17	NPC1L1 (ENSECRG00000000331) #18	ykt6 (ENSECRG00000000330) #21	gck (ENSECRG00000000329) #22	myl7 (ENSECRG00000000328) #23	pold2 (ENSECRG00000000327) #24	aebp1a (ENSECRG00000000326) #25	pnx (ENSECRG00000000325)	ELMOD3 (ENSECRG00000000324)	ash2l (ENSECRG00000000323)	star (ENSECRG00000000322)	ENSECRG00000000321	lsm1 (ENSECRG00000000320)	bag4 (ENSECRG00000000319)	DUSP26 (ENSECRG00000000318)	ENSECRG00000000317	RNF122 (ENSECRG00000000316)	ENSECRG00000000314	mat2ab (ENSECRG00000000313)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.b #22
Lamprey	MODERN SPECIES	191										EBF1 (ENSPMAG00000003301)	ebf3a (ENSPMAG00000003287)	ENSPMAG00000003279	nop56 (ENSPMAG00000003197)	mfsd13a (ENSPMAG00000003182)	ENSPMAG00000003177	gck (ENSPMAG00000003141) #22	SLC26A2 (ENSPMAG00000003117)	IDUA (ENSPMAG00000003105)	ENSPMAG00000003080	HTR4 (ENSPMAG00000003070)	psmd4a (ENSPMAG00000003046)	ENSPMAG00000003045	PWWP2B (ENSPMAG00000003044)
Hagfish	MODERN SPECIES	190								ENSEBUG00000010537	ENSEBUG00000016457	ENSEBUG00000017072	nop56 (ENSEBUG00000004487)	mfsd13a (ENSEBUG00000016045)	ENSEBUG00000003991	ENSEBUG00000005746	ENSEBUG00000015446	gck (ENSEBUG00000003343) #22	ENSEBUG00000010369	ENSEBUG00000005812	ENSEBUG00000009700	nagk (ENSEBUG00000002404)	pi4k2b (ENSEBUG00000008182)	ENSEBUG00000004048	ENSEBUG00000013927
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Actinopterygii	ANCESTRAL SPECIES	500											ENSGT00910000144316	ENSGT00940000155027	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22
Reedfish	MODERN SPECIES	2	PDE6A (ENSECRG00000010059)	SLC26A2 (ENSECRG00000009870)	HTR4 (ENSECRG00000009860)	lman2 (ENSECRG00000009839)	tmed9 (ENSECRG00000009714)	b4galt7 (ENSECRG00000009680)	ENSECRG00000009670	emx3 (ENSECRG00000009661)	N4BP3 (ENSECRG00000009649)	rmnd5b (ENSECRG00000009617)	rab24 (ENSECRG00000009598)	ENSECRG00000009557	fgfr4 (ENSECRG00000009520)	znf346 (ENSECRG00000009498)	ENSECRG00000009454	ENSECRG00000009433 ##22	ENSECRG00000009421	hspa9 (ENSECRG00000009389)	fgfrl1b (ENSECRG00000009370)	ENSECRG00000009363	ENSECRG00000009355	LARP1 (ENSECRG00000009336)	faxdc2 (ENSECRG00000009315)	ENSECRG00000009303	TIFAB (ENSECRG00000009289)	macroh2a1 (ENSECRG00000009250)	ENSECRG00000009228	pitx1 (ENSECRG00000009211)	PCBD2 (ENSECRG00000009198)	txndc15 (ENSECRG00000009192)	zgc:77058 (ENSECRG00000009183)
Neopterygii	ANCESTRAL SPECIES	24										ENSGT00910000144316	ENSGT00940000155027	ENSGT00940000172841	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690
Spotted gar	MODERN SPECIES	672	SLC26A2 (ENSLOCG00000012182)	pde6a (ENSLOCG00000012187)	ENSLOCG00000012195	ARHGEF37 (ENSLOCG00000012204)	tlr22 (ENSLOCG00000018316)	slit3 (ENSLOCG00000012214)	cxcl14 (ENSLOCG00000012251)	fam13b (ENSLOCG00000012259)	rab24 (ENSLOCG00000012274)	ENSLOCG00000012281	ENSLOCG00000012285	ENSLOCG00000012289	fgfr4 (ENSLOCG00000012293)	znf346 (ENSLOCG00000012305)	ENSLOCG00000012311	ENSLOCG00000012316 ##22	DBN1 (ENSLOCG00000012321)	PRR7 (ENSLOCG00000012327)	GRK6 (ENSLOCG00000012330)	nop16 (ENSLOCG00000012348)	ARL10 (ENSLOCG00000012356)	WWC1 (ENSLOCG00000012357)	rars1 (ENSLOCG00000012373)	ENSLOCG00000012379	sgcd (ENSLOCG00000012386)	mrpl22 (ENSLOCG00000012398)	GEMIN5 (ENSLOCG00000012402)	cnot8 (ENSLOCG00000012411)	FAM114A2 (ENSLOCG00000012416)	MFAP3 (ENSLOCG00000012425)	GALNT10 (ENSLOCG00000012431)
Osteoglossocephalai	ANCESTRAL SPECIES	46	ENSGT00530000063786.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00730000112379	ENSGT00940000159055	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000172841	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690
Osteoglossiformes	ANCESTRAL SPECIES	19	ENSGT00390000004149	ENSGT00940000160325.b	ENSGT00730000111371	ENSGT00940000160552	ENSGT00390000014618.b.c.b	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.g	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299.e	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.C ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000157991	ENSGT00940000156962	ENSGT00990000204853	ENSGT00940000159885	ENSGT00940000154816.a.b.a	ENSGT00390000018606	ENSGT00940000158832	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT00390000015977	ENSGT00900000143393	ENSGT00530000063723.a
P. kingsleyae	MODERN SPECIES	131														add2 (ENSPKIG00000011946)	figla (ENSPKIG00000011920)	ENSPKIG00000011693 ##22	hk2 (ENSPKIG00000011519) ##22	NPFFR1 (ENSPKIG00000011483)	ENSPKIG00000011463	tet3 (ENSPKIG00000011353)	ap3m2 (ENSPKIG00000011261)	kat6a (ENSPKIG00000011149)	ENSPKIG00000011056	sema4c (ENSPKIG00000011012)	tbx1 (ENSPKIG00000010974)	gnb1l (ENSPKIG00000010949)	TXNRD2 (ENSPKIG00000010831)	ENSPKIG00000010768	ARVCF (ENSPKIG00000010527)	tango2 (ENSPKIG00000010409)	dgcr8 (ENSPKIG00000010338)
Clupeocephala	ANCESTRAL SPECIES	29	ENSGT00940000160552	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000154962.A.a.b	ENSGT00940000168407	ENSGT00390000014618.b.d	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.C ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000157991	ENSGT00940000156962	ENSGT00990000204853	ENSGT00940000159885	ENSGT00940000154816.a.b	ENSGT00390000018606	ENSGT00940000158832	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT00390000015977	ENSGT00900000143393	ENSGT00530000063723.a
Euteleosteomorpha	ANCESTRAL SPECIES	25	ENSGT00530000063786.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000178266	ENSGT00940000159055	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000172841	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Acanthomorphata	ANCESTRAL SPECIES	10	ENSGT00530000063786.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000178266	ENSGT00940000159055	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000172841	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Cod	DUPLICATION
Cod	MODERN SPECIES	20	ENSGMOG00000023259	ENSGMOG00000023863	ENSGMOG00000033291	ENSGMOG00000028947	ENSGMOG00000031849	ENSGMOG00000032224	ENSGMOG00000025996	ENSGMOG00000020362	ENSGMOG00000022217	ENSGMOG00000027770	ENSGMOG00000025475	ENSGMOG00000036136	znf346 (ENSGMOG00000028117)	ENSGMOG00000023117	ENSGMOG00000030820 ##22	ENSGMOG00000009095 ##22	zgc:77151 (ENSGMOG00000023376)	ENSGMOG00000024759	ENSGMOG00000031209	ccdc90b (ENSGMOG00000000954)	ENSGMOG00000000926	guca1d (ENSGMOG00000002535)	ENSGMOG00000026105	STIM1 (ENSGMOG00000036378)	ENSGMOG00000009596	ENSGMOG00000026503	ENSGMOG00000032086	ENSGMOG00000036509	ENSGMOG00000001539	ENSGMOG00000027141	ENSGMOG00000024147
Cod	MODERN SPECIES	20	ENSGMOG00000031719	ENSGMOG00000023259	ENSGMOG00000023863	ENSGMOG00000033291	ENSGMOG00000028947	ENSGMOG00000031849	ENSGMOG00000032224	ENSGMOG00000025996	ENSGMOG00000020362	ENSGMOG00000022217	ENSGMOG00000027770	ENSGMOG00000025475	ENSGMOG00000036136	znf346 (ENSGMOG00000028117)	ENSGMOG00000023117	ENSGMOG00000030820 ##22	ENSGMOG00000009095 ##22	zgc:77151 (ENSGMOG00000023376)	ENSGMOG00000024759	ENSGMOG00000031209	ccdc90b (ENSGMOG00000000954)	ENSGMOG00000000926	guca1d (ENSGMOG00000002535)	ENSGMOG00000026105	STIM1 (ENSGMOG00000036378)	ENSGMOG00000009596	ENSGMOG00000026503	ENSGMOG00000032086	ENSGMOG00000036509	ENSGMOG00000001539	ENSGMOG00000027141
Euacanthomorphacea	ANCESTRAL SPECIES	74	ENSGT00530000063786.b	ENSGT00940000160785	ENSGT00940000161538	ENSGT00940000160946	ENSGT00940000178266	ENSGT00940000159055	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000172841	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Pinecone sodierfish	MODERN SPECIES	5	cldn2 (ENSMMDG00005016027)	ripply1 (ENSMMDG00005016014)	PRRG3 (ENSMMDG00005016004)	ENSMMDG00005015983	AMOT (ENSMMDG00005015922)	pgk1 (ENSMMDG00005015505)	ENSMMDG00005015367	pgrmc1 (ENSMMDG00005015348)	rab24 (ENSMMDG00005015298)	ENSMMDG00005015224	ENSMMDG00005015191	fgfr4 (ENSMMDG00005015049)	znf346 (ENSMMDG00005014817)	ENSMMDG00005014690	ENSMMDG00005014672	ENSMMDG00005013735 ##22	zgc:77151 (ENSMMDG00005013586)	DBN1 (ENSMMDG00005013560)	PRR7 (ENSMMDG00005013543)	GRK6 (ENSMMDG00005013431)	nop16 (ENSMMDG00005013385)	ARL10 (ENSMMDG00005013348)	ENSMMDG00005013320	ENSMMDG00005013296	ENSMMDG00005013268	ENSMMDG00005013241	rars1 (ENSMMDG00005010268)	ENSMMDG00005009671	sgcd (ENSMMDG00005009589)	mrpl22 (ENSMMDG00005009534)	GEMIN5 (ENSMMDG00005006179)
Percomorphaceae	ANCESTRAL SPECIES	91															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00890000139472	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT01040000240400.c.a.b.a.b.a.a.b.b	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00890000139472	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Eupercaria	ANCESTRAL SPECIES	27	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00890000139472	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00390000016584.c	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00950000183089.c.a.k.b.b	ENSGT00990000211813	ENSGT00390000000002.a.a.b	ENSGT00390000001803	ENSGT00940000155150.b.b	ENSGT00390000000703	ENSGT00950000182994.A	ENSGT00390000001134.b.`b.a	ENSGT00940000165879	ENSGT00390000006178	ENSGT00940000156647.b	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000164655	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT01100000263551.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Tetraodon	MODERN SPECIES	22	ADRA1B (ENSTNIG00000007601)	ENSTNIG00000007602	ENSTNIG00000007603	ENSTNIG00000000699	APBB3 (ENSTNIG00000007604)	ENSTNIG00000007605	camk2a (ENSTNIG00000007606)	rps14 (ENSTNIG00000007607)	chm (ENSTNIG00000007608)	ENSTNIG00000007609	ENSTNIG00000000702	ENSTNIG00000007610	ENSTNIG00000007611	ENSTNIG00000007612	ENSTNIG00000000432	ENSTNIG00000007613 ##22	DBN1 (ENSTNIG00000007614)	GRK6 (ENSTNIG00000007615)	nop16 (ENSTNIG00000007616)	ARL10 (ENSTNIG00000001494)	WWC1 (ENSTNIG00000007617)	ENSTNIG00000007618	rars1 (ENSTNIG00000007619)	ENSTNIG00000007620	HEPACAM (ENSTNIG00000007621)	sgcd (ENSTNIG00000007622)	sgcd (ENSTNIG00000007623)	mrpl22 (ENSTNIG00000007624)	GEMIN5 (ENSTNIG00000007625)	cnot8 (ENSTNIG00000007626)	FAM114A2 (ENSTNIG00000007627)
Fugu	DUPLICATION
Fugu	MODERN SPECIES	4	ENSTRUG00000033010	ENSTRUG00000032511	ENSTRUG00000028997	ENSTRUG00000019679	spg21 (ENSTRUG00000000560)	shcbp1 (ENSTRUG00000000594)	mthfs (ENSTRUG00000019947)	fah (ENSTRUG00000000711)	arnt2 (ENSTRUG00000000793)	ENSTRUG00000028620	ENSTRUG00000026277	pepd (ENSTRUG00000001151)	mpc1 (ENSTRUG00000001409)	kifbp (ENSTRUG00000001474)	vps26a (ENSTRUG00000001641)	ENSTRUG00000002415 ##22	tacr2 (ENSTRUG00000003864)	tspan15 (ENSTRUG00000025643)	ENSTRUG00000005048	pbld (ENSTRUG00000022162)	HNRNPH3 (ENSTRUG00000023443)	rufy2 (ENSTRUG00000005737)	fam120b (ENSTRUG00000006139)	dld (ENSTRUG00000006183)	mis12 (ENSTRUG00000025936)	ppm1g (ENSTRUG00000006501)	ENSTRUG00000021153	pdcd2 (ENSTRUG00000024722)	tbp (ENSTRUG00000007200)	psmc3 (ENSTRUG00000007383)	psmb1 (ENSTRUG00000007430)
Fugu	MODERN SPECIES	6	ENSTRUG00000020675	ENSTRUG00000020131	ENSTRUG00000029472	APBB3 (ENSTRUG00000007757)	ENSTRUG00000007664	camk2a (ENSTRUG00000007478)	rps14 (ENSTRUG00000007440)	chm (ENSTRUG00000007170)	ENSTRUG00000006865	ENSTRUG00000006273	ndufa2 (ENSTRUG00000022054)	ENSTRUG00000030704	ENSTRUG00000020956	ENSTRUG00000004733	ENSTRUG00000002871	ENSTRUG00000023438 ##22	zgc:77151 (ENSTRUG00000024913)	DBN1 (ENSTRUG00000001232)	ENSTRUG00000020514	GRK6 (ENSTRUG00000001036)	nop16 (ENSTRUG00000020255)	ENSTRUG00000000958	WWC1 (ENSTRUG00000000744)	rars1 (ENSTRUG00000000601)	ENSTRUG00000000463	HEPACAM (ENSTRUG00000000452)	sgcd (ENSTRUG00000025659)	mrpl22 (ENSTRUG00000019671)	cnot8 (ENSTRUG00000000395)	FAM114A2 (ENSTRUG00000000267)	MFAP3 (ENSTRUG00000025482)
Eupecaria_A	ANCESTRAL SPECIES	25	ENSGT00940000162761.a	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00390000016584.c	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Ballan wrasse	MODERN SPECIES	1213																ENSLBEG00000011654 ##22
Eupecaria_B	ANCESTRAL SPECIES	25	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00940000161860	ENSGT01100000263506.a.d	ENSGT01100000263474.a.b.b.o.a.a.c.b	ENSGT01100000263504.a.b.b.b.b.y	ENSGT01020000230360.c.b.a.b.a.b.c.a.a.b	ENSGT00990000203553.c.a.a.b.a.a.a.b	ENSGT00390000016584.c	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Perciformes	ANCESTRAL SPECIES	26	ENSGT00990000203615.b.a.a.a.b	ENSGT00950000183064.b	ENSGT00940000154465.C.f	ENSGT00940000154540.a	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000161327	ENSGT00390000008820.f	ENSGT00940000169781	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000165564	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000155350.h	ENSGT00940000154465.C.e	ENSGT00530000067490	ENSGT00940000154465.C.f	ENSGT00940000154540.a	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000161327	ENSGT00390000008820.f	ENSGT00940000169781	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Stickleback	MODERN SPECIES	7	MYO7A (ENSGACG00000020788)	ENSGACG00000020789	ENSGACG00000020790	ENSGACG00000020791	ENSGACG00000020792	rabgef1 (ENSGACG00000020793)	KCNJ6 (ENSGACG00000020794)	pgk1 (ENSGACG00000020795)	pgrmc1 (ENSGACG00000020796)	rab24 (ENSGACG00000020797)	ENSGACG00000020798	fgfr4 (ENSGACG00000020799)	znf346 (ENSGACG00000020800)	ENSGACG00000020801	ENSGACG00000020802	ENSGACG00000020803 ##22	ENSGACG00000020804	ENSGACG00000020805	ENSGACG00000020806	ENSGACG00000020807	GRK6 (ENSGACG00000020808)	ENSGACG00000020809	nop16 (ENSGACG00000020810)	ARL10 (ENSGACG00000020811)	WWC1 (ENSGACG00000020812)	rars1 (ENSGACG00000020813)	ENSGACG00000020814	sgcd (ENSGACG00000020815)	HAND1 (ENSGACG00000020816)	sap30l (ENSGACG00000020817)	ENSGACG00000020818
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES		mrpl4 (ENSCLMG00005001955)	ENSCLMG00005001971	sp2 (ENSCLMG00005002226)	socs7 (ENSCLMG00005002228)	ENSCLMG00005002231	mrpl45 (ENSCLMG00005002234)	npepps (ENSCLMG00005002248)	zgc:77929 (ENSCLMG00005002314)	ENSCLMG00005002315	ENSCLMG00005002316	ENSCLMG00005002317	ENSCLMG00005002319	lgsn (ENSCLMG00005002320)	ENSCLMG00005002321	myom2a (ENSCLMG00005002326)	ENSCLMG00005003322 ##22	ENSCLMG00005007822	ENSCLMG00005007826	ARHGAP19 (ENSCLMG00005007827)	slit1b (ENSCLMG00005007864)	ENSCLMG00005009871	ENSCLMG00005009875	hoga1 (ENSCLMG00005009876)	CNNM1 (ENSCLMG00005009877)	GOT1 (ENSCLMG00005009878)	ENSCLMG00005009890	NKX2-3 (ENSCLMG00005009891)	SLC25A28 (ENSCLMG00005009893)	ENTPD7 (ENSCLMG00005009896)	atpv0e2 (ENSCLMG00005010358)	ENSCLMG00005010360
Lumpfish	MODERN SPECIES	5	CAPN5 (ENSCLMG00005002777)	ompb (ENSCLMG00005003014)	MYO7A (ENSCLMG00005003019)	ENSCLMG00005003031	rabgef1 (ENSCLMG00005003042)	KCNJ6 (ENSCLMG00005003069)	kctd7 (ENSCLMG00005003109)	pgk1 (ENSCLMG00005003120)	cox7b (ENSCLMG00005003184)	pgrmc1 (ENSCLMG00005003185)	rab24 (ENSCLMG00005003187)	NSD1 (ENSCLMG00005003219)	fgfr4 (ENSCLMG00005006797)	znf346 (ENSCLMG00005006804)	ENSCLMG00005006805	ENSCLMG00005006824 ##22	ENSCLMG00005008951	DBN1 (ENSCLMG00005008953)	PRR7 (ENSCLMG00005008956)	GRK6 (ENSCLMG00005008970)	nop16 (ENSCLMG00005012895)	ARL10 (ENSCLMG00005012896)	WWC1 (ENSCLMG00005012902)	rars1 (ENSCLMG00005013141)	ENSCLMG00005013216	sgcd (ENSCLMG00005013219)	mrpl22 (ENSCLMG00005013221)	GEMIN5 (ENSCLMG00005013231)	ponzr2 (ENSCLMG00005013246)	HAND1 (ENSCLMG00005013249)	sap30l (ENSCLMG00005013254)
Perciformes_a	ANCESTRAL SPECIES	28	ENSGT00390000018533	ENSGT00990000203615.b.a.a.a.b	ENSGT00950000183064.b	ENSGT00940000154465.C.f	ENSGT00940000154540.a	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000161327	ENSGT00390000008820.f	ENSGT00940000169781	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000165564	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Channel bull blenny	MODERN SPECIES	5	ENSCGOG00000018520	rabgef1 (ENSCGOG00000018516)	KCNJ6 (ENSCGOG00000018515)	kctd7 (ENSCGOG00000018512)	pgk1 (ENSCGOG00000017929)	cox7b (ENSCGOG00000017916)	pgrmc1 (ENSCGOG00000017909)	ENSCGOG00000017908	ENSCGOG00000017902	rab24 (ENSCGOG00000017888)	fgfr4 (ENSCGOG00000017726)	ncf1 (ENSCGOG00000017688)	st6gal1 (ENSCGOG00000017685)	ENSCGOG00000017683	ENSCGOG00000017675	ENSCGOG00000017674 ##22	ENSCGOG00000017671	ENSCGOG00000017668	ENSCGOG00000017666	GRK6 (ENSCGOG00000016034)	nop16 (ENSCGOG00000016006)	ARL10 (ENSCGOG00000016005)	WWC1 (ENSCGOG00000015904)	rars1 (ENSCGOG00000014882)	ENSCGOG00000014864	sgcd (ENSCGOG00000014790)	mrpl22 (ENSCGOG00000014788)	GEMIN5 (ENSCGOG00000014517)	cnot8 (ENSCGOG00000014508)	FAM114A2 (ENSCGOG00000014332)	MFAP3 (ENSCGOG00000014326)
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	29	immp1l (ENSSLUG00000013727)	ENSSLUG00000013816	rnaset2 (ENSSLUG00000014335)	MYOM2 (ENSSLUG00000014461)	ENSSLUG00000016621	ENSSLUG00000016633	csmd1a (ENSSLUG00000016638)	ENSSLUG00000016642	ddx21 (ENSSLUG00000016681)	gbgt1l5 (ENSSLUG00000017471)	mpc1 (ENSSLUG00000017492)	kifbp (ENSSLUG00000017511)	ENSSLUG00000017526	vps26a (ENSSLUG00000017543)	supv3l1 (ENSSLUG00000017668)	ENSSLUG00000017739 ##22	HK1 (ENSSLUG00000017780) ##22	tacr2 (ENSSLUG00000018343)	tspan15 (ENSSLUG00000018376)	ENSSLUG00000018378	ENSSLUG00000018392	pbld (ENSSLUG00000018464)	HNRNPH3 (ENSSLUG00000005300)	rufy2 (ENSSLUG00000005401)	ENSSLUG00000005635	dld (ENSSLUG00000005677)	mis12 (ENSSLUG00000006129)	ppm1g (ENSSLUG00000006151)	ENSSLUG00000006241	pdcd2 (ENSSLUG00000006251)	tbp (ENSSLUG00000006261)
Pike perch	MODERN SPECIES	22	SMG8 (ENSSLUG00000017861)	KCNJ15 (ENSSLUG00000017864)	vps26c (ENSSLUG00000017868)	ENSSLUG00000017882	rabgef1 (ENSSLUG00000017897)	KCNJ6 (ENSSLUG00000017903)	kctd7 (ENSSLUG00000017910)	pgk1 (ENSSLUG00000017922)	cox7b (ENSSLUG00000017974)	pgrmc1 (ENSSLUG00000017978)	rab24 (ENSSLUG00000017981)	ENSSLUG00000017984	fgfr4 (ENSSLUG00000018660)	znf346 (ENSSLUG00000025002)	ENSSLUG00000025006	ENSSLUG00000025027 ##22	zgc:77151 (ENSSLUG00000025042)	DBN1 (ENSSLUG00000000307)	ENSSLUG00000000314	GRK6 (ENSSLUG00000000394)	nop16 (ENSSLUG00000000598)	ARL10 (ENSSLUG00000000602)	WWC1 (ENSSLUG00000000618)	rars1 (ENSSLUG00000000689)	ENSSLUG00000000815	sgcd (ENSSLUG00000000820)	ENSSLUG00000000824	ENSSLUG00000000828	ddc (ENSSLUG00000000833)	mrpl22 (ENSSLUG00000000851)	GEMIN5 (ENSSLUG00000000861)
Eupecaria_C	ANCESTRAL SPECIES	32	ENSGT00390000018533	ENSGT00990000203615.b.a.a.a.b	ENSGT00950000183064.b	ENSGT00940000154465.C	ENSGT00940000154540.a	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000161327	ENSGT00940000161811.c	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000165564	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Gilthead seabream	MODERN SPECIES	4	ENSSAUG00010010360	ENSSAUG00010010358	ENSSAUG00010010355	ENSSAUG00010010354	ENSSAUG00010010351	ENSSAUG00010010349	ENSSAUG00010010348	H2BC8 (ENSSAUG00010010347)	ENSSAUG00010010346	ENSSAUG00010010341	ENSSAUG00010010338	ENSSAUG00010010337	st6gal1 (ENSSAUG00010010336)	ncf1 (ENSSAUG00010010297)	ENSSAUG00010010274	ENSSAUG00010010258 ##22	zgc:77151 (ENSSAUG00010010247)	ENSSAUG00010010244	ENSSAUG00010010241	ENSSAUG00010010238	ENSSAUG00010010235	GRK6 (ENSSAUG00010007426)	nop16 (ENSSAUG00010007392)	ENSSAUG00010007390	rars1 (ENSSAUG00010006254)	WWC1 (ENSSAUG00010005023)	rars1 (ENSSAUG00010004048)	ENSSAUG00010004033	sgcd (ENSSAUG00010004017)	mrpl22 (ENSSAUG00010004009)	GEMIN5 (ENSSAUG00010002380)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	20	ENSGT00390000018533	ENSGT00990000203615.b.a.a.a.b	ENSGT00950000183064.b	ENSGT00940000154465.C	ENSGT00940000154540.a	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000161327	ENSGT00940000161811.c	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000165564	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
European seabass	MODERN SPECIES	4	sar1b (ENSDLAG00005027244)	SEC24A (ENSDLAG00005008731)	camlg (ENSDLAG00005009939)	ddx46 (ENSDLAG00005009957)	ENSDLAG00005029578	ENSDLAG00005029582	txndc15 (ENSDLAG00005010675)	PCBD2 (ENSDLAG00005010687)	ENSDLAG00005010760	macroh2a1 (ENSDLAG00005032963)	ENSDLAG00005034643	ENSDLAG00005010920	ENSDLAG00005011380	ENSDLAG00005011398	ENSDLAG00005011414	ENSDLAG00005011475 ##22	zgc:77151 (ENSDLAG00005011702)	ENSDLAG00005029725	ENSDLAG00005011708	ENSDLAG00005011782	nop16 (ENSDLAG00005014504)	ENSDLAG00005014508	ENSDLAG00005014964	rars1 (ENSDLAG00005014531)	sgcd (ENSDLAG00005014992)	ENSDLAG00005015021	mrpl22 (ENSDLAG00005015041)	GEMIN5 (ENSDLAG00005015092)	CNOT8 (ENSDLAG00005016103)	FAM114A2 (ENSDLAG00005016123)	MFAP3 (ENSDLAG00005016183)
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	480	elp4 (ENSLCRG00005005777)	immp1l (ENSLCRG00005005799)	ENSLCRG00005005817	ENSLCRG00005006969	MYOM2 (ENSLCRG00005006994)	CSMD1 (ENSLCRG00005008485)	ENSLCRG00005008539	ddx21 (ENSLCRG00005008554)	ENSLCRG00005009453	mpc1 (ENSLCRG00005009454)	mpc1 (ENSLCRG00005009456)	kifbp (ENSLCRG00005009459)	ENSLCRG00005009460	vps26a (ENSLCRG00005009466)	supv3l1 (ENSLCRG00005009539)	ENSLCRG00005009606 ##22	tacr2 (ENSLCRG00005016817)	tspan15 (ENSLCRG00005016835)	ENSLCRG00005016839	ENSLCRG00005016845	HNRNPH3 (ENSLCRG00005016852)	pbld (ENSLCRG00005016854)	rufy2 (ENSLCRG00005016861)	ENSLCRG00005017663	fam120b (ENSLCRG00005017665)	dld (ENSLCRG00005017669)	mis12 (ENSLCRG00005017795)	ppm1g (ENSLCRG00005017804)	ENSLCRG00005017848	pdcd2 (ENSLCRG00005017849)	tbp (ENSLCRG00005017851)
Large yellow croaker	MODERN SPECIES	493	KCNJ15 (ENSLCRG00005016316)	vps26c (ENSLCRG00005016317)	ENSLCRG00005016320	rabgef1 (ENSLCRG00005016321)	KCNJ6 (ENSLCRG00005016323)	kctd7 (ENSLCRG00005016324)	myl10 (ENSLCRG00005016326)	pgk1 (ENSLCRG00005016327)	COX7B2 (ENSLCRG00005016385)	pgrmc1 (ENSLCRG00005016388)	rab24 (ENSLCRG00005016390)	ENSLCRG00005016406	fgfr4 (ENSLCRG00005017458)	znf346 (ENSLCRG00005023021)	ENSLCRG00005023023	ENSLCRG00005023026 ##22	ENSLCRG00005023029	ENSLCRG00005023031	ENSLCRG00005023033	ENSLCRG00005023034	GRK6 (ENSLCRG00005023037)	nop16 (ENSLCRG00005023048)	AK1 (ENSLCRG00005023049)	ENSLCRG00005023050	WWC1 (ENSLCRG00005023052)	rars1 (ENSLCRG00005023067)	ENSLCRG00005023255	sgcd (ENSLCRG00005023256)	mrpl22 (ENSLCRG00005023258)	cnot8 (ENSLCRG00005023259)	GEMIN5 (ENSLCRG00005023263)
Percomorphaceae_D	ANCESTRAL SPECIES	16															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Anabantaria	ANCESTRAL SPECIES	13															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000024887	ENSMAMG00000022436	fam53c (ENSMAMG00000022434)	slbp2 (ENSMAMG00000022433)	zmat2 (ENSMAMG00000022430)	lcp2a (ENSMAMG00000022428)	ENSMAMG00000022426	nhp2 (ENSMAMG00000022425)	ENSMAMG00000022422	ENSMAMG00000027528	ENSMAMG00000022420	ENSMAMG00000025715	ENSMAMG00000022414	ENSMAMG00000022410	ENSMAMG00000022405	ENSMAMG00000021890 ##22	zgc:77151 (ENSMAMG00000021881)	ENSMAMG00000021876	ENSMAMG00000021875	ENSMAMG00000021870	nop16 (ENSMAMG00000021868)	ENSMAMG00000021867	ENSMAMG00000021866	rars1 (ENSMAMG00000021860)	ENSMAMG00000021856	sgcd (ENSMAMG00000021848)	mrpl22 (ENSMAMG00000021842)	GEMIN5 (ENSMAMG00000021839)	CNOT8 (ENSMAMG00000021834)	FAM114A2 (ENSMAMG00000021832)	MFAP3 (ENSMAMG00000021827)
Anabantoidei	ANCESTRAL SPECIES	12															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000007586	ENSBSLG00000007588	hspb9l (ENSBSLG00000007594)	fam53c (ENSBSLG00000007596)	slbp2 (ENSBSLG00000007599)	zmat2 (ENSBSLG00000007605)	lcp2a (ENSBSLG00000007613)	nhp2 (ENSBSLG00000007617)	ENSBSLG00000007618	ENSBSLG00000007621	ADRA1B (ENSBSLG00000007624)	ENSBSLG00000007630	ENSBSLG00000007634	ENSBSLG00000007636	GRK6 (ENSBSLG00000007642)	ENSBSLG00000007664 ##22	zgc:77151 (ENSBSLG00000007669)	ENSBSLG00000007678	ENSBSLG00000007688	nop16 (ENSBSLG00000007689)	ARL10 (ENSBSLG00000007691)	WWC1 (ENSBSLG00000007697)	rars1 (ENSBSLG00000008109)	ENSBSLG00000008133	sgcd (ENSBSLG00000008167)	ENSBSLG00000008174	mrpl22 (ENSBSLG00000008186)	GEMIN5 (ENSBSLG00000008198)	CNOT8 (ENSBSLG00000008582)	FAM114A2 (ENSBSLG00000008601)	ENSBSLG00000008620
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	5	ENSATEG00000028472	ENSATEG00000014097	ENSATEG00000029971	ENSATEG00000014145	ENSATEG00000014153	zgc:77151 (ENSATEG00000014183)	ENSATEG00000014303 ##22	ENSATEG00000014816	ENSATEG00000027984	ENSATEG00000028712	ENSATEG00000029698	ENSATEG00000015146	ENSATEG00000028791	ENSATEG00000030127	ENSATEG00000025837	ENSATEG00000027228 ##22	endog (ENSATEG00000015467)	ENSATEG00000015498	med27 (ENSATEG00000015558)	fnbp1a (ENSATEG00000015670)	si:ch211-248e11.2 (ENSATEG00000027165)	ENSATEG00000016031
Climbing perch	MODERN SPECIES	5	ENSATEG00000016031	si:ch211-248e11.2 (ENSATEG00000027165)	fnbp1a (ENSATEG00000015670)	med27 (ENSATEG00000015558)	ENSATEG00000015498	endog (ENSATEG00000015467)	ENSATEG00000027228 ##22	ENSATEG00000025837	ENSATEG00000030127	ENSATEG00000028791	ENSATEG00000015146	ENSATEG00000029698	ENSATEG00000028712	ENSATEG00000027984	ENSATEG00000014816	ENSATEG00000014303 ##22	zgc:77151 (ENSATEG00000014183)	ENSATEG00000014153	ENSATEG00000014145	ENSATEG00000029971	ENSATEG00000014097	ENSATEG00000028472	nop16 (ENSATEG00000014089)	ARL10 (ENSATEG00000027986)	ENSATEG00000014070	rars1 (ENSATEG00000014025)	ENSATEG00000013996	sgcd (ENSATEG00000026761)	mrpl22 (ENSATEG00000013930)	GEMIN5 (ENSATEG00000013900)	CNOT8 (ENSATEG00000013857)
Carangaria	ANCESTRAL SPECIES	16															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Pleuronectoidei	ANCESTRAL SPECIES	32	ENSGT00510000047299.c	ENSGT00940000163509.b	ENSGT00940000165075.a.a	ENSGT00670000098179.d.a	ENSGT00530000063371.C.a	ENSGT00940000164705	ENSGT00390000010712	ENSGT00940000156835.k	ENSGT00940000161176	ENSGT00550000074939	ENSGT00940000163701.b.a.b.b.b	ENSGT00940000163509.a.b.x	ENSGT00940000170476	ENSGT00940000156944.a.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Turbot	MODERN SPECIES	16	ENSSMAG00000024046	ENSSMAG00000031824	ENSSMAG00000011315	ENSSMAG00000034962	ENSSMAG00000036787	ENSSMAG00000011336	ENSSMAG00000030030	ENSSMAG00000033029	ENSSMAG00000027600	ENSSMAG00000011369	ENSSMAG00000033195	ENSSMAG00000036365	ENSSMAG00000034509	ENSSMAG00000027755	ENSSMAG00000011575	ENSSMAG00000011648 ##22	zgc:77151 (ENSSMAG00000012286)	DBN1 (ENSSMAG00000012295)	ENSSMAG00000021779	GRK6 (ENSSMAG00000012333)	nop16 (ENSSMAG00000030892)	ENSSMAG00000036254	ENSSMAG00000013752	rars1 (ENSSMAG00000013772)	ENSSMAG00000013807	sgcd (ENSSMAG00000013832)	ENSSMAG00000037465	mrpl22 (ENSSMAG00000010168)	cnot8 (ENSSMAG00000010228)	FAM114A2 (ENSSMAG00000010239)	ENSSMAG00000025684
Tongue sole	MODERN SPECIES	10	ap4m1 (ENSCSEG00000020740)	arrb2a (ENSCSEG00000020738)	taf9 (ENSCSEG00000020736)	cdx1b (ENSCSEG00000020735)	APBB3 (ENSCSEG00000020731)	ENSCSEG00000020723	ENSCSEG00000020684	rps14 (ENSCSEG00000020678)	ENSCSEG00000020674	FAM114A2 (ENSCSEG00000020670)	GALNT10 (ENSCSEG00000020667)	sap30l (ENSCSEG00000020664)	HAND1 (ENSCSEG00000020662)	ponzr2 (ENSCSEG00000020661)	ncf1 (ENSCSEG00000020659)	ENSCSEG00000020559 ##22	zgc:77151 (ENSCSEG00000020543)	DBN1 (ENSCSEG00000020537)	GRK6 (ENSCSEG00000020527)	nop16 (ENSCSEG00000020523)	WWC1 (ENSCSEG00000020515)	rars1 (ENSCSEG00000020512)	sgcd (ENSCSEG00000020506)	ENSCSEG00000020498	NDUFA2 (ENSCSEG00000020492)	ik (ENSCSEG00000020488)	chm (ENSCSEG00000020480)	cnot8 (ENSCSEG00000020475)	ENSCSEG00000020467	mrpl22 (ENSCSEG00000020463)	ENSCSEG00000020459
Carangaria_A	ANCESTRAL SPECIES	86													ENSGT00940000157053.u.a	ENSGT00940000160014	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Seriola	ANCESTRAL SPECIES	2	ENSGT00820000127055.a.b	ENSGT00940000154495.a.b	ENSGT01010000222313.A.b.b.b.a	ENSGT00940000155545.b	ENSGT00950000183155.a.a.a.b.f	ENSGT00530000063405.b.f	ENSGT00390000013989.b.i.a	ENSGT00550000075101.q	ENSGT00940000156093.e.a	ENSGT00940000155743.b	ENSGT00940000154616.a.a	ENSGT00940000157705	ENSGT00940000158478	ENSGT00940000157670	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a
Greater amberjack	MODERN SPECIES	119	ywhae2 (ENSSDUG00000021846)	CRK (ENSSDUG00000021850)	ENSSDUG00000021858	ENSSDUG00000021868	ENSSDUG00000021878	TECTA (ENSSDUG00000021894)	TBCEL (ENSSDUG00000021915)	plekhb1 (ENSSDUG00000021924)	sc5d (ENSSDUG00000021927)	cadm1a (ENSSDUG00000021931)	ncam1a (ENSSDUG00000021944)	zbtb16a (ENSSDUG00000021980)	HTR3A (ENSSDUG00000021988)	USP28 (ENSSDUG00000022005)	ENSSDUG00000022063	ENSSDUG00000022108 ##22	zgc:77151 (ENSSDUG00000022313)	DBN1 (ENSSDUG00000022321)	ENSSDUG00000022326	GRK6 (ENSSDUG00000022332)	nop16 (ENSSDUG00000022349)	ENSSDUG00000022358	WWC1 (ENSSDUG00000022370)	rars1 (ENSSDUG00000022397)	ENSSDUG00000000104	sgcd (ENSSDUG00000000130)
Yellowtail amberjack	MODERN SPECIES	2770	ENSSLDG00000003520	ENSSLDG00000003504	ENSSLDG00000003459	ENSSLDG00000003328	TBCEL (ENSSLDG00000003290)	plekhb1 (ENSSLDG00000003276)	sc5d (ENSSLDG00000003252)	cadm1a (ENSSLDG00000003202)	ENSSLDG00000003181	ncam1a (ENSSLDG00000003022)	zbtb16a (ENSSLDG00000002956)	HTR3A (ENSSLDG00000002895)	HTR3B (ENSSLDG00000002836)	USP28 (ENSSLDG00000002564)	ENSSLDG00000002535	ENSSLDG00000001856 ##22	ENSSLDG00000001758	DBN1 (ENSSLDG00000001682)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	98	spata17 (ENSLCAG00010025716)	esrrga (ENSLCAG00010025721)	USH2A (ENSLCAG00010025740)	KCTD3 (ENSLCAG00010025777)	NRBP1 (ENSLCAG00010025780)	KRTCAP3 (ENSLCAG00010025786)	ENSLCAG00010025791	ENSLCAG00010025813	AHCTF1 (ENSLCAG00010025824)	ENSLCAG00010025878	ENSLCAG00010025884	ENSLCAG00010025886	KIF26B (ENSLCAG00010025894)	ENSLCAG00010025900	supv3l1 (ENSLCAG00010025911)	ENSLCAG00010025991 ##22	tacr2 (ENSLCAG00010026213)	tspan15 (ENSLCAG00010026220)	ENSLCAG00010026253	pbld (ENSLCAG00010026287)	HNRNPH3 (ENSLCAG00010026301)	rufy2 (ENSLCAG00010026319)	ENSLCAG00010026334	ENSLCAG00010026336	dld (ENSLCAG00010026344)	mis12 (ENSLCAG00010026352)	ppm1g (ENSLCAG00010026355)	ENSLCAG00010026359	pdcd2 (ENSLCAG00010026362)	tbp (ENSLCAG00010026364)	psmc3 (ENSLCAG00010026368)
Barramundi perch	MODERN SPECIES	423							ENSLCAG00010021763	ENSLCAG00010021754	ENSLCAG00010021748	ENSLCAG00010021741	st6gal1 (ENSLCAG00010021734)	ncf1 (ENSLCAG00010021707)	ENSLCAG00010021695	ENSLCAG00010021691	ENSLCAG00010021686	ENSLCAG00010021560 ##22	ENSLCAG00010021538	zgc:77151 (ENSLCAG00010021536)	ENSLCAG00010021530
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000162761.b.b.a.c.b.b	ENSGT00940000162761.a	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00890000139472	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00940000167172.a	ENSGT00940000159812	ENSGT00980000198670	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000159929	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b	ENSGT00390000007635	ENSGT00940000172838	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Midas cichlid	MODERN SPECIES	156																ENSACIG00000019359 ##22	ENSACIG00000019306	DBN1 (ENSACIG00000019290)	PRR7 (ENSACIG00000019283)	GRK6 (ENSACIG00000019273)	nop16 (ENSACIG00000019263)	ENSACIG00000019254	WWC1 (ENSACIG00000019217)	rars1 (ENSACIG00000019199)	ENSACIG00000019009	sgcd (ENSACIG00000018959)	ENSACIG00000018950	yju2b (ENSACIG00000018933)	gtf3aa (ENSACIG00000018921)	PSPN (ENSACIG00000018913)	wdr83 (ENSACIG00000018901)
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	DUPLICATION
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a.o.a ##22
Nile tilapia	MODERN SPECIES	1	GALNT10 (ENSONIG00000016454)	GALNT10 (ENSONIG00000016451)	MFAP3 (ENSONIG00000038622)	FAM114A2 (ENSONIG00000016446)	cnot8 (ENSONIG00000039604)	GEMIN5 (ENSONIG00000016441)	mrpl22 (ENSONIG00000016439)	ENSONIG00000032761	ENSONIG00000039572	ENSONIG00000011898	ENSONIG00000039943	ENSONIG00000033010	ENSONIG00000032236	ENSONIG00000016399	ENSONIG00000032984	ENSONIG00000016400 ##22	ENSONIG00000035015	ENSONIG00000035462	GRK6 (ENSONIG00000016407)	nop16 (ENSONIG00000037371)	ENSONIG00000016420	WWC1 (ENSONIG00000016421)	rars1 (ENSONIG00000016429)	ENSONIG00000016434	sgcd (ENSONIG00000036483)	ENSONIG00000029175	ENSONIG00000004169	rnasek (ENSONIG00000032865)	zgc:92664 (ENSONIG00000004165)	ENSONIG00000030421	ENSONIG00000004157
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a.o.a ##22
Lyretail cichlid	MODERN SPECIES	297	ENSNBRG00000009293	ENSNBRG00000009187	zgc:56585 (ENSNBRG00000009169)	ENSNBRG00000009085	LARP1 (ENSNBRG00000008963)	faxdc2 (ENSNBRG00000008906)	macroh2a1 (ENSNBRG00000008873)	pitx1 (ENSNBRG00000008754)	PCBD2 (ENSNBRG00000008716)	txndc15 (ENSNBRG00000008685)	ENSNBRG00000008641	ENSNBRG00000008614	ENSNBRG00000008579	ENSNBRG00000008559	ENSNBRG00000008547	ENSNBRG00000008438 ##22	ENSNBRG00000008393	ENSNBRG00000008355	ENSNBRG00000008342	ENSNBRG00000008323	ENSNBRG00000008299	zgc:77058 (ENSNBRG00000008276)	ddx46 (ENSNBRG00000008155)	camlg (ENSNBRG00000008070)	SEC24A (ENSNBRG00000008051)	sar1b (ENSNBRG00000008013)	JADE2 (ENSNBRG00000007939)	cdkn2aipnl (ENSNBRG00000007913)	UBE2B (ENSNBRG00000007879)	PPP2CA (ENSNBRG00000007844)	skp1 (ENSNBRG00000007808)
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.a	ENSGT01100000263483.E.a.c.a.b.a.a.a.a.b	ENSGT00390000007635	ENSGT00940000172838	ENSGT00950000182787.E.d.e.a.o.b ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	22	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b.e	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.b.b	ENSGT00940000157342.c.b.f	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.a	ENSGT01100000263483.E.a.c.a.b.a.a.a.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a.o.b ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b.a	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b.e	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.b.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.a	ENSGT01100000263483.E.a.c.a.b.a.a.a.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a.o.b ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00950000182887.C.a.a.b.a.a	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b.a	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b.e	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.b.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.a	ENSGT01100000263483.E.a.c.a.b.a.a.a.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a.o.b ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Haplochromini_B	ANCESTRAL SPECIES	16	ENSGT00940000155097	ENSGT00940000164078.a.b.b	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.b.a	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.a	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b.e	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.b.a	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.b.a	ENSGT00950000183116.b.a.a.b.a.b.m.b.k.b.a.b.a.a.b.a.b.a	ENSGT01100000263483.E.a.c.a.b.a.a.a.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a.o.b ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Eastern happy	MODERN SPECIES	1	ENSACLG00000026197	ENSACLG00000026189	ins (ENSACLG00000026180)	nipal4 (ENSACLG00000026162)	gria1b (ENSACLG00000026066)	ENSACLG00000026062	ENSACLG00000026058	ENSACLG00000026037	cbln10 (ENSACLG00000026030)	ncf1 (ENSACLG00000026013)	st6gal1 (ENSACLG00000026003)	ENSACLG00000025998	ENSACLG00000025986	ENSACLG00000025976	ENSACLG00000025899	ENSACLG00000025352 ##22	zgc:77151 (ENSACLG00000025325)	DBN1 (ENSACLG00000025282)	ENSACLG00000025275	GRK6 (ENSACLG00000025235)	nop16 (ENSACLG00000025227)	ENSACLG00000025222	WWC1 (ENSACLG00000025210)	rars1 (ENSACLG00000025166)	ENSACLG00000025086	sgcd (ENSACLG00000025055)	ENSACLG00000025030	ENSACLG00000024959	mrpl22 (ENSACLG00000024902)	GEMIN5 (ENSACLG00000024886)	cnot8 (ENSACLG00000024882)
Zebra mbuna	MODERN SPECIES	1092	ENSMZEG00005024674	ENSMZEG00005024672	ins (ENSMZEG00005024670)	nipal4 (ENSMZEG00005024668)	gria1b (ENSMZEG00005024663)	ENSMZEG00005024661	ENSMZEG00005024656	ENSMZEG00005024657	ncf1 (ENSMZEG00005024654)	st6gal1 (ENSMZEG00005024651)	ENSMZEG00005024624	ENSMZEG00005024620	ENSMZEG00005024618	ENSMZEG00005024614	ENSMZEG00005024610	ENSMZEG00005012383 ##22	zgc:77151 (ENSMZEG00005012183)	DBN1 (ENSMZEG00005012160)	ENSMZEG00005012151	GRK6 (ENSMZEG00005012126)	nop16 (ENSMZEG00005012112)	ENSMZEG00005012105	WWC1 (ENSMZEG00005012086)	rars1 (ENSMZEG00005012060)	ENSMZEG00005012037	sgcd (ENSMZEG00005012024)	ENSMZEG00005012001	mrpl22 (ENSMZEG00005011987)	GEMIN5 (ENSMZEG00005011967)	cnot8 (ENSMZEG00005011949)	FAM114A2 (ENSMZEG00005011937)
P. nyererei	MODERN SPECIES	310												ncf1 (ENSPNYG00000014610)	st6gal1 (ENSPNYG00000014529)	ENSPNYG00000014488	ENSPNYG00000014461	ENSPNYG00000013889 ##22	zgc:77151 (ENSPNYG00000013664)	DBN1 (ENSPNYG00000013625)	ENSPNYG00000013612	GRK6 (ENSPNYG00000013565)	nop16 (ENSPNYG00000013529)	ENSPNYG00000013513	WWC1 (ENSPNYG00000013478)	ENSPNYG00000013436	sgcd (ENSPNYG00000013412)	mrpl22 (ENSPNYG00000013370)	GEMIN5 (ENSPNYG00000013259)	cnot8 (ENSPNYG00000013202)	FAM114A2 (ENSPNYG00000013183)	MFAP3 (ENSPNYG00000013172)	GALNT10 (ENSPNYG00000013148)
Burton s mouthbrooder	MODERN SPECIES	360															ENSHBUG00000011392	ENSHBUG00000013227 ##22	zgc:77151 (ENSHBUG00000013351)	DBN1 (ENSHBUG00000013395)	ENSHBUG00000000395	ENSHBUG00000013414	GRK6 (ENSHBUG00000013512)	nop16 (ENSHBUG00000013527)	ENSHBUG00000000972	WWC1 (ENSHBUG00000000403)	rars1 (ENSHBUG00000013622)	ENSHBUG00000013647	sgcd (ENSHBUG00000013681)	ENSHBUG00000013713	mrpl22 (ENSHBUG00000000840)	GEMIN5 (ENSHBUG00000013738)	cnot8 (ENSHBUG00000013761)
Lyretail cichlid	MODERN SPECIES	297	arrb2a (ENSNBRG00000016354)	taf9 (ENSNBRG00000016324)	ENSNBRG00000016309	ENSNBRG00000016293	ENSNBRG00000016156	ENSNBRG00000016105	ENSNBRG00000016091	ENSNBRG00000016074	ins (ENSNBRG00000016061)	ENSNBRG00000016052	ENSNBRG00000016011	ncf1 (ENSNBRG00000015835)	st6gal1 (ENSNBRG00000015783)	ENSNBRG00000015721	ENSNBRG00000015695	ENSNBRG00000015412 ##22	ENSNBRG00000015330	ENSNBRG00000015265	ENSNBRG00000015242	GRK6 (ENSNBRG00000015195)	nop16 (ENSNBRG00000015181)	ENSNBRG00000015174	ENSNBRG00000015165	ENSNBRG00000015150	sgcd (ENSNBRG00000015137)	mrpl22 (ENSNBRG00000015114)	GEMIN5 (ENSNBRG00000015008)	cnot8 (ENSNBRG00000014974)	ENSNBRG00000014961	MFAP3 (ENSNBRG00000014945)	GALNT10 (ENSNBRG00000014920)
Nile tilapia	MODERN SPECIES	1	ENSONIG00000030858	ENSONIG00000017311	ENSONIG00000017313	ENSONIG00000017315	LARP1 (ENSONIG00000017308)	faxdc2 (ENSONIG00000017307)	macroh2a1 (ENSONIG00000017305)	pitx1 (ENSONIG00000027336)	PCBD2 (ENSONIG00000017303)	txndc15 (ENSONIG00000038887)	ENSONIG00000030238	ENSONIG00000027959	ENSONIG00000039693	txndc15 (ENSONIG00000033072)	ENSONIG00000020559	ENSONIG00000017298 ##22	ENSONIG00000029341	ENSONIG00000041073	ENSONIG00000041481	ENSONIG00000038970	ddx46 (ENSONIG00000017282)	camlg (ENSONIG00000017281)	SEC24A (ENSONIG00000017279)	sar1b (ENSONIG00000017278)	JADE2 (ENSONIG00000017275)	cdkn2aipnl (ENSONIG00000017274)	ENSONIG00000028528	ube2b (ENSONIG00000039958)	ppp2ca (ENSONIG00000017267)	skp1 (ENSONIG00000017266)	tcf7 (ENSONIG00000017259)
Pseudocrenilabrinae	ANCESTRAL SPECIES	26	ENSGT00940000153499.b.a	ENSGT00940000162544.c.b	ENSGT00390000008853	ENSGT00940000154962.A.a.a	ENSGT00390000014618.b.d	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a.p ##22	ENSGT00950000182787.C ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000174952	ENSGT00940000157991	ENSGT00940000156962	ENSGT00940000167358	ENSGT00940000159885	ENSGT00940000154816.a.b	ENSGT00390000018606	ENSGT00940000158832	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT00940000155794.h.g.b.a.a.a.b	ENSGT00940000159252.b.a
Nile tilapia	MODERN SPECIES		elp4 (ENSONIG00000005538)	immp1l (ENSONIG00000005537)	ENSONIG00000005527	MYOM2 (ENSONIG00000005516)	rnaset2 (ENSONIG00000005526)	CSMD1 (ENSONIG00000005500)	ENSONIG00000040721	ddx21 (ENSONIG00000005499)	mpc1 (ENSONIG00000030716)	supv3l1 (ENSONIG00000005497)	ENSONIG00000031725	vps26a (ENSONIG00000005493)	ENSONIG00000028635	kifbp (ENSONIG00000005490)	supv3l1 (ENSONIG00000040683)	ENSONIG00000017023 ##22	tacr2 (ENSONIG00000017029)	tspan15 (ENSONIG00000017032)	ENSONIG00000033495	ENSONIG00000035757	ENSONIG00000017036	PBLD (ENSONIG00000017038)	HNRNPH3 (ENSONIG00000017042)	rufy2 (ENSONIG00000017044)	fam120b (ENSONIG00000017049)	dld (ENSONIG00000017050)	mis12 (ENSONIG00000040128)	ENSONIG00000017054	ENSONIG00000017057	pdcd2 (ENSONIG00000017059)	tbp (ENSONIG00000017061)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	28	ENSGT00940000162544.c.b	ENSGT00390000008853	ENSGT00940000165184	ENSGT00940000154962.A.a.a	ENSGT00390000014618.b.d	ENSGT00390000014666.a	ENSGT00940000167361	ENSGT00940000156279.e	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a.p ##22	ENSGT00950000182787.C ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000174952	ENSGT00940000157991	ENSGT00940000156962	ENSGT00940000167358	ENSGT00940000159885	ENSGT00940000154816.a.b	ENSGT00390000018606	ENSGT00940000158832	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT00940000155794.h.g.b.a.a.a.b	ENSGT00940000159252.b.a
Lyretail cichlid	MODERN SPECIES	340	ENSNBRG00000010222	ENSNBRG00000010201	ENSNBRG00000010172	znf703 (ENSNBRG00000010152)	ERLIN2 (ENSNBRG00000010124)	ENSNBRG00000010066	bmp10 (ENSNBRG00000010031)	arhgap25 (ENSNBRG00000009978)	cds2 (ENSNBRG00000009944)	zgc:65851 (ENSNBRG00000009929)	ENSNBRG00000009918	MXD1 (ENSNBRG00000009903)	snrnp27 (ENSNBRG00000009891)	add2 (ENSNBRG00000009846)	figla (ENSNBRG00000009826)	ENSNBRG00000009821 ##22	hk2 (ENSNBRG00000009259) ##22	NPFFR1 (ENSNBRG00000009101)	tet3 (ENSNBRG00000009093)	ENSNBRG00000009077	ap3m2 (ENSNBRG00000009054)	ENSNBRG00000009048	kat6a (ENSNBRG00000008998)	ENSNBRG00000008990	sema4c (ENSNBRG00000008972)
Pomacentridae	ANCESTRAL SPECIES	89	ENSGT00940000168627	ENSGT00670000098179.d.a	ENSGT00530000063371.C.a	ENSGT00940000164705	ENSGT00390000010712	ENSGT00940000156835.k	ENSGT00940000161176	ENSGT00550000074939	ENSGT00940000163701.b.a.b.b.b	ENSGT00940000163509.a.b	ENSGT00940000157053.u.a	ENSGT00940000160014	ENSGT00940000163509.b	ENSGT01100000263483.B.c.b.b.e	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	351	ENSSPAG00000011527	hspb9l (ENSSPAG00000011538)	fam53c (ENSSPAG00000011567)	slbp2 (ENSSPAG00000011574)	zmat2 (ENSSPAG00000011593)	lcp2a (ENSSPAG00000011622)	ENSSPAG00000011659	ENSSPAG00000011671	ENSSPAG00000011688	nhp2 (ENSSPAG00000011696)	ENSSPAG00000011721	ENSSPAG00000011729	st6gal1 (ENSSPAG00000011747)	ncf1 (ENSSPAG00000011849)	ENSSPAG00000011870	ENSSPAG00000011909 ##22	ENSSPAG00000012439 ##22	zgc:77151 (ENSSPAG00000014776)
Bicolor damselfish	MODERN SPECIES	351	hspb9l (ENSSPAG00000011538)	fam53c (ENSSPAG00000011567)	slbp2 (ENSSPAG00000011574)	zmat2 (ENSSPAG00000011593)	lcp2a (ENSSPAG00000011622)	ENSSPAG00000011659	ENSSPAG00000011671	ENSSPAG00000011688	nhp2 (ENSSPAG00000011696)	ENSSPAG00000011721	ENSSPAG00000011729	st6gal1 (ENSSPAG00000011747)	ncf1 (ENSSPAG00000011849)	ENSSPAG00000011870	ENSSPAG00000011909 ##22	ENSSPAG00000012439 ##22	zgc:77151 (ENSSPAG00000014776)
Pomacentridae_A	ANCESTRAL SPECIES	162															ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Amphiprion	ANCESTRAL SPECIES	71	ENSGT00940000165075.a.a	ENSGT00940000168627	ENSGT00670000098179.d.a	ENSGT00530000063371.C.a	ENSGT00940000164705	ENSGT00390000010712	ENSGT00940000156835.k	ENSGT00940000161176	ENSGT00550000074939	ENSGT00940000163701.b.a.b.b.b	ENSGT00940000163509.a.b	ENSGT00940000157053.u.a	ENSGT00940000160014	ENSGT01100000263483.B.c.b.b.e	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	6	fam53c (ENSAPEG00000009081)	slbp2 (ENSAPEG00000008972)	zmat2 (ENSAPEG00000008887)	lcp2a (ENSAPEG00000008874)	ENSAPEG00000008789	nhp2 (ENSAPEG00000008765)	ponzr2 (ENSAPEG00000008755)	ENSAPEG00000008741	st6gal1 (ENSAPEG00000008705)	ncf1 (ENSAPEG00000008680)	ENSAPEG00000008662	ENSAPEG00000008638	ENSAPEG00000008618	ENSAPEG00000008572	ENSAPEG00000008383 ##22	ENSAPEG00000006968 ##22	ENSAPEG00000006837	zgc:77151 (ENSAPEG00000006808)	DBN1 (ENSAPEG00000006762)	ENSAPEG00000006730	ENSAPEG00000006719	ENSAPEG00000006699	GRK6 (ENSAPEG00000006644)	nop16 (ENSAPEG00000006605)	ENSAPEG00000006592	WWC1 (ENSAPEG00000006521)	rars1 (ENSAPEG00000006465)	ENSAPEG00000006407	ENSAPEG00000006390	sgcd (ENSAPEG00000006370)	ENSAPEG00000006353
Orange clownfish	MODERN SPECIES	6	hspb9l (ENSAPEG00000009110)	fam53c (ENSAPEG00000009081)	slbp2 (ENSAPEG00000008972)	zmat2 (ENSAPEG00000008887)	lcp2a (ENSAPEG00000008874)	ENSAPEG00000008789	nhp2 (ENSAPEG00000008765)	ponzr2 (ENSAPEG00000008755)	ENSAPEG00000008741	st6gal1 (ENSAPEG00000008705)	ncf1 (ENSAPEG00000008680)	ENSAPEG00000008662	ENSAPEG00000008638	ENSAPEG00000008618	ENSAPEG00000008572	ENSAPEG00000008383 ##22	ENSAPEG00000006968 ##22	ENSAPEG00000006837	zgc:77151 (ENSAPEG00000006808)	DBN1 (ENSAPEG00000006762)	ENSAPEG00000006730	ENSAPEG00000006719	ENSAPEG00000006699	GRK6 (ENSAPEG00000006644)	nop16 (ENSAPEG00000006605)	ENSAPEG00000006592	WWC1 (ENSAPEG00000006521)	rars1 (ENSAPEG00000006465)	ENSAPEG00000006407	ENSAPEG00000006390	sgcd (ENSAPEG00000006370)
Clown anemonefish	MODERN SPECIES	1214																ENSAOCG00000009507 ##22
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	740																ENSAPOG00000000241 ##22	ENSAPOG00000008838 ##22	zgc:77151 (ENSAPOG00000008818)	ENSAPOG00000008788	ENSAPOG00000000232
Spiny chromis	MODERN SPECIES	740															ENSAPOG00000000241 ##22	ENSAPOG00000008838 ##22	zgc:77151 (ENSAPOG00000008818)	ENSAPOG00000008788	ENSAPOG00000000232
Atherinomorphae	ANCESTRAL SPECIES	14											ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Oryzias	ANCESTRAL SPECIES	14					ENSGT00940000167170	ENSGT00940000165615.a	ENSGT00730000110920.a	ENSGT00940000154907.a.a	ENSGT01030000234626.E	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690.e.a.a
Oryzias_a	ANCESTRAL SPECIES	2						ENSGT00940000167170	ENSGT00730000110920.a	ENSGT00940000154907.a.a	ENSGT01030000234626.E	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b	ENSGT00940000156690.e.a.a	ENSGT00390000006633.a	ENSGT00940000161111	ENSGT00940000163701.b.a.b.a
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000023794	acer3 (ENSORLG00000027189)	coll (ENSORLG00000020553)	ENSORLG00000026048	acat1 (ENSORLG00000019568)	ins (ENSORLG00000029820)	nipal4 (ENSORLG00000018454)	ENSORLG00000024215	ENSORLG00000024395	ENSORLG00000030433	ENSORLG00000022427	ncf1 (ENSORLG00000019617)	st6gal1 (ENSORLG00000026366)	ENSORLG00000026108	ENSORLG00000025182	ENSORLG00000019565 ##22	ENSORLG00000027578	ENSORLG00000030563	zgc:77151 (ENSORLG00000018351)	ENSORLG00000029141	ENSORLG00000028385	DBN1 (ENSORLG00000018347)	ENSORLG00000023200	GRK6 (ENSORLG00000018337)	nop16 (ENSORLG00000026611)	ENSORLG00000018307	ENSORLG00000028508	ENSORLG00000024734	ENSORLG00000027160	sgcd (ENSORLG00000027216)	mrpl22 (ENSORLG00000022618)
Chinese medaka	MODERN SPECIES	4046																ENSOSIG00000014097 ##22
Oryzias_b	ANCESTRAL SPECIES	53	ENSGT00390000006633.a	ENSGT00940000156690.e.a.b	ENSGT00940000156690.e.a.a	ENSGT00390000011576.b	ENSGT00940000167170	ENSGT00940000165615.a	ENSGT00730000110920.a	ENSGT00940000154907.a.a	ENSGT01030000234626.E	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00390000010054.a	ENSGT00390000000080.a.b	ENSGT00620000088064	ENSGT00390000002110	ENSGT00940000158509.p	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a	ENSGT00940000160017
Indian medaka	MODERN SPECIES	4	ENSOMEG00000001563	zgc:123105 (ENSOMEG00000001569)	ENSOMEG00000001577	ENSOMEG00000001586	ENSOMEG00000001590	acer3 (ENSOMEG00000001601)	MMP1 (ENSOMEG00000001620)	ENSOMEG00000001625	acat1 (ENSOMEG00000001631)	ins (ENSOMEG00000001632)	nipal4 (ENSOMEG00000001642)	gria1b (ENSOMEG00000001682)	ncf1 (ENSOMEG00000001705)	st6gal1 (ENSOMEG00000001712)	ENSOMEG00000000012	ENSOMEG00000001873 ##22	ENSOMEG00000001943	emsy (ENSOMEG00000001967)	ENSOMEG00000001980	mpzl1l (ENSOMEG00000001988)	rabep1 (ENSOMEG00000002008)	ENSOMEG00000002025	kcnj1b (ENSOMEG00000002032)	foxred1 (ENSOMEG00000002042)	FCHSD2 (ENSOMEG00000002057)	ENSOMEG00000002068	AQP11 (ENSOMEG00000002076)	elmod1 (ENSOMEG00000000025)	slc35f2 (ENSOMEG00000000029)	CUL5 (ENSOMEG00000002107)	ompb (ENSOMEG00000002119)
Cyprinodontiformes	ANCESTRAL SPECIES	11								ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00980000199126	ENSGT01030000234513.A.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000169096	ENSGT00390000017457	ENSGT00390000013836	ENSGT00940000153253.b.a	ENSGT00390000016427	ENSGT00510000047471	ENSGT00940000155206	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00980000199126	ENSGT01030000234513.A.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
NAME_4	ANCESTRAL SPECIES	12	ENSGT00500000044966	ENSGT00500000044950	ENSGT00940000169096	ENSGT00390000017457	ENSGT00390000013836	ENSGT00940000153253.b.a	ENSGT00390000016427	ENSGT00510000047471	ENSGT00940000155206	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22
Mummichog	MODERN SPECIES	1135														st6gal1 (ENSFHEG00000022127)	ENSFHEG00000022091	ENSFHEG00000022082 ##22
Poeciliinae	ANCESTRAL SPECIES	26	ENSGT00500000044950	ENSGT00940000169096	ENSGT00390000017457	ENSGT00390000013836	ENSGT00940000153253.b.a	ENSGT00390000016427	ENSGT00510000047471	ENSGT00940000155206	ENSGT00940000164327.a	ENSGT00940000159087	ENSGT00940000157342.c.b	ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT01030000234513.A.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00940000167475	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509.p	ENSGT00390000002110	ENSGT00620000088064	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Platyfish	MODERN SPECIES	2	kctd7 (ENSXMAG00000024238)	KCNJ6 (ENSXMAG00000019733)	rabgef1 (ENSXMAG00000006632)	vps26c (ENSXMAG00000002913)	KCNJ15 (ENSXMAG00000009041)	SMG8 (ENSXMAG00000009027)	ppm1e (ENSXMAG00000028674)	nipal4 (ENSXMAG00000026271)	gria1b (ENSXMAG00000014975)	ENSXMAG00000026647	ncf1 (ENSXMAG00000014979)	st6gal1 (ENSXMAG00000015022)	ENSXMAG00000029638	gjb7 (ENSXMAG00000015041)	ENSXMAG00000015045	ENSXMAG00000015048 ##22	ENSXMAG00000027018	zgc:77151 (ENSXMAG00000015652)	DBN1 (ENSXMAG00000015647)	ENSXMAG00000015643	GRK6 (ENSXMAG00000015628)	nop16 (ENSXMAG00000029113)	ENSXMAG00000015622	WWC1 (ENSXMAG00000015617)	rars1 (ENSXMAG00000015595)	ENSXMAG00000015580	sgcd (ENSXMAG00000027998)	ENSXMAG00000029873	ENSXMAG00000021573	ENSXMAG00000029499	mrpl22 (ENSXMAG00000015564)
Poecilia	ANCESTRAL SPECIES	3	ENSGT00940000153499.b.a	ENSGT00940000162544.c.b	ENSGT00940000165184	ENSGT00940000154962.A.a.a	ENSGT00390000014618.b.d	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.C.p.b ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000157991	ENSGT00940000156962	ENSGT00940000167358	ENSGT00940000159885	ENSGT00940000154816.a.b	ENSGT00390000018606	ENSGT00940000158832	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT00390000015977	ENSGT00530000063723.a	ENSGT00900000143393
Guppy	DUPLICATION
Guppy	MODERN SPECIES	461	smad2 (ENSPREG00000017247)	ENSPREG00000017278	ENSPREG00000017308	ENSPREG00000017346	znf703 (ENSPREG00000017386)	ENSPREG00000017403	MXD1 (ENSPREG00000017428)	zgc:65851 (ENSPREG00000017447)	cds2 (ENSPREG00000017498)	ENSPREG00000017571	bmp10 (ENSPREG00000017589)	ENSPREG00000017612	ERLIN2 (ENSPREG00000017620)	add2 (ENSPREG00000017646)	figla (ENSPREG00000017683)	ENSPREG00000017715 ##22	ENSPREG00000017787 ##22	ENSPREG00000018383	ENSPREG00000018389	tet3 (ENSPREG00000018405)	ap3m2 (ENSPREG00000018421)	kat6a (ENSPREG00000018455)	ENSPREG00000018512	sema4c (ENSPREG00000018529)	tbx1 (ENSPREG00000018558)	gnb1l (ENSPREG00000018567)	TXNRD2 (ENSPREG00000018592)	arvcfb (ENSPREG00000018675)	tango2 (ENSPREG00000018846)	dgcr8 (ENSPREG00000018877)	trmt2a (ENSPREG00000018920)
Guppy	MODERN SPECIES	444	ENSPREG00000011995	adssl (ENSPREG00000012013)	mthfs (ENSPREG00000012059)	jam3b (ENSPREG00000012116)	IGSF9B (ENSPREG00000012133)	cfap58 (ENSPREG00000012183)	fez1 (ENSPREG00000012346)	esama (ENSPREG00000012370)	MSANTD2 (ENSPREG00000012379)	robo3 (ENSPREG00000012408)	ENSPREG00000012528	ENSPREG00000012550	tmem218 (ENSPREG00000012567)	pknox2 (ENSPREG00000012582)	PANX3 (ENSPREG00000012627)	ENSPREG00000012652 ##22	zgc:77151 (ENSPREG00000012718)	DBN1 (ENSPREG00000012756)	ENSPREG00000012789	GRK6 (ENSPREG00000012804)	nop16 (ENSPREG00000012940)	ENSPREG00000012949	ENSPREG00000012959	WWC1 (ENSPREG00000012973)	rars1 (ENSPREG00000013003)	ENSPREG00000013046	sgcd (ENSPREG00000013126)	ENSPREG00000013222	mrpl22 (ENSPREG00000013247)	GEMIN5 (ENSPREG00000013286)	cnot8 (ENSPREG00000013316)
NAME_6	ANCESTRAL SPECIES	113	ENSGT00940000153499.b.a.h	ENSGT00940000162544.c.b	ENSGT00940000165184	ENSGT00940000154962.A.a.a	ENSGT00390000014618.b.d	ENSGT00730000111237	ENSGT00940000159446	ENSGT00940000165501	ENSGT00940000158877	ENSGT00950000183015.A	ENSGT00940000156279.e	ENSGT00940000167361	ENSGT00390000014666.a	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.C.p.b ##22	ENSGT01070000253744.b.a.a.a.b	ENSGT00940000157631	ENSGT00940000157991	ENSGT00940000156962	ENSGT00940000167358	ENSGT00940000159885
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	916	ATP2A1 (ENSPLAG00000000281)	anapc7 (ENSPLAG00000000734)	ENSPLAG00000012537	ENSPLAG00000012574	pptc7a (ENSPLAG00000012600)	PPP1CA (ENSPLAG00000012615)	myl2b (ENSPLAG00000012627)	zgc:65851 (ENSPLAG00000012659)	cds2 (ENSPLAG00000012725)	arhgap25 (ENSPLAG00000012839)	bmp10 (ENSPLAG00000012854)	ENSPLAG00000000294	ERLIN2 (ENSPLAG00000012905)	add2 (ENSPLAG00000012980)	figla (ENSPLAG00000012996)	ENSPLAG00000013235 ##22	ENSPLAG00000013253 ##22
Sailfin molly	MODERN SPECIES	3667																ENSPLAG00000009754 ##22
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	417	smad2 (ENSPFOG00000004885)	ENSPFOG00000004773	ENSPFOG00000004656	ENSPFOG00000004539	znf703 (ENSPFOG00000004495)	snrnp27 (ENSPFOG00000004436)	MXD1 (ENSPFOG00000004367)	zgc:65851 (ENSPFOG00000004325)	cds2 (ENSPFOG00000004128)	ENSPFOG00000004027	bmp10 (ENSPFOG00000004013)	ENSPFOG00000004009	ERLIN2 (ENSPFOG00000003812)	add2 (ENSPFOG00000003378)	figla (ENSPFOG00000003349)	ENSPFOG00000003316 ##22	hk2 (ENSPFOG00000002396) ##22	NPFFR1 (ENSPFOG00000002330)	ENSPFOG00000002319	ENSPFOG00000002299	tet3 (ENSPFOG00000002140)	ap3m2 (ENSPFOG00000002033)	kat6a (ENSPFOG00000001813)	ENSPFOG00000022412	sema4c (ENSPFOG00000001336)
Amazon molly	MODERN SPECIES	1128																ENSPFOG00000000953 ##22
Amazon molly	MODERN SPECIES	955											ncf1 (ENSPFOG00000005500)	st6gal1 (ENSPFOG00000005605)	gjb7 (ENSPFOG00000020743)	ENSPFOG00000024655	ENSPFOG00000020744	ENSPFOG00000005657 ##22
Aplocheiloidei	ANCESTRAL SPECIES	308												ENSGT00940000160014	ENSGT00940000157053.u.a	ENSGT01030000234513.A.a.b	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	959															st6gal1 (ENSKMAG00000012372)	ENSKMAG00000012438 ##22
Mangrove rivulus	MODERN SPECIES	977															st6gal1 (ENSKMAG00000013489)	ENSKMAG00000013470 ##22
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1627	SMAD2 (ENSNFUG00015023992)	ENSNFUG00015024019	rchy1 (ENSNFUG00015024027)	ENSNFUG00015024031	ZNF703 (ENSNFUG00015024050)	SNRNP27 (ENSNFUG00015024051)	MXD1 (ENSNFUG00015024056)	Nfu_g_1_009071 (ENSNFUG00015024058)	CDS2 (ENSNFUG00015024073)	ARHGAP25 (ENSNFUG00015024216)	bmp10 (ENSNFUG00015024219)	ENSNFUG00015024221	ERLIN2 (ENSNFUG00015024226)	ADD2 (ENSNFUG00015024247)	figla (ENSNFUG00015024259)	ENSNFUG00015024267 ##22	ENSNFUG00015024271	tet3 (ENSNFUG00015024278)	AP3M2 (ENSNFUG00015024299)	kat6a (ENSNFUG00015024318)	ENSNFUG00015024445	CDCA2 (ENSNFUG00015024447)	sema4c (ENSNFUG00015024450)	ENSNFUG00015024452	ENSNFUG00015024454	ENSNFUG00015024456	tbx1 (ENSNFUG00015005263)	GNB1L (ENSNFUG00015005288)	TXNRD2 (ENSNFUG00015005393)	ARVCFB (ENSNFUG00015005792)	tango2 (ENSNFUG00015005924)
Turquoise killifish	MODERN SPECIES	1618	anxa13l (ENSNFUG00015007766)	ENSNFUG00015007790	ABI1B (ENSNFUG00015007815)	ENSNFUG00015007990	YME1L1B (ENSNFUG00015008037)	RAB18B (ENSNFUG00015008467)	mkxb (ENSNFUG00015008480)	ENSNFUG00015008484	WACB (ENSNFUG00015008489)	ENSNFUG00015008494	ENSNFUG00015008509	NCF1 (ENSNFUG00015008534)	ST6GAL1 (ENSNFUG00015008557)	gjb7 (ENSNFUG00015008569)	ENSNFUG00015008578	ENSNFUG00015008595 ##22	TFR1A (ENSNFUG00015008669)	ENSNFUG00015009596	ints15 (ENSNFUG00015009604)	BLVRA (ENSNFUG00015009615) #34	ENSNFUG00015009688	ccr12a (ENSNFUG00015009979)	ENSNFUG00015009987	tmem68 (ENSNFUG00015010009)	XKR4 (ENSNFUG00015010031)	CABZ01085085.1 (ENSNFUG00015010043)	KCNB2 (ENSNFUG00015010073)	EXOC3 (ENSNFUG00015010083)	cahz (ENSNFUG00015010138)	dlgap1a (ENSNFUG00015010164)	ENSNFUG00015010171
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	106	npepps (ENSHCOG00000001944)	ENSHCOG00000001927	zgc:77929 (ENSHCOG00000001924)	cdc6 (ENSHCOG00000001908)	ENSHCOG00000000059	ltv1 (ENSHCOG00000001882)	ENSHCOG00000021081	capn9 (ENSHCOG00000021059)	taf5l (ENSHCOG00000021046)	vps54 (ENSHCOG00000021036)	ENSHCOG00000020941	ENSHCOG00000020932	ptp4a1 (ENSHCOG00000020907)	lgsn (ENSHCOG00000020893)	myom2a (ENSHCOG00000020868)	ENSHCOG00000020782 ##22	hk1 (ENSHCOG00000020441) ##22	ZBTB45 (ENSHCOG00000020415)	dla (ENSHCOG00000020390)	ENSHCOG00000020379	ENSHCOG00000020363
Tiger tail seahorse	MODERN SPECIES	8	slc37a2 (ENSHCOG00000019503)	ENSHCOG00000019515	psmg1 (ENSHCOG00000019533)	nhp2 (ENSHCOG00000019552)	ENSHCOG00000019557	ENSHCOG00000019564	ADRA1B (ENSHCOG00000019580)	ENSHCOG00000019592	ENSHCOG00000019627	ENSHCOG00000019671	ENSHCOG00000019731	ENSHCOG00000019747	ENSHCOG00000019758	ncf1 (ENSHCOG00000000528)	st6gal1 (ENSHCOG00000019815)	ENSHCOG00000019839 ##22	ENSHCOG00000019861	ENSHCOG00000019903	ENSHCOG00000019921	GRK6 (ENSHCOG00000019987)	nop16 (ENSHCOG00000019999)	ARL10 (ENSHCOG00000020004)	ENSHCOG00000020021	ENSHCOG00000020028	ENSHCOG00000020038	ENSHCOG00000020057	rars1 (ENSHCOG00000020064)
Protacanthopterygii	ANCESTRAL SPECIES	63						ENSGT00940000178266	ENSGT00940000159055	ENSGT00390000008820.f	ENSGT00390000012178	ENSGT00940000160619	ENSGT00910000144316	ENSGT00940000155027.c.b	ENSGT00940000165564	ENSGT00940000159101	ENSGT00390000007635	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00390000003426	ENSGT00940000160017	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00950000183061.a.a.a.a.a.a.a	ENSGT00940000158509	ENSGT00390000002110	ENSGT00620000088064.j	ENSGT00390000000080.a.b	ENSGT00390000010054.a	ENSGT00390000011576.b
Northern pike	MODERN SPECIES	5	CSMD1 (ENSELUG00000019489)	MYOM2 (ENSELUG00000019380)	rnaset2 (ENSELUG00000019269)	RPS6KA2 (ENSELUG00000019202)	mpc1 (ENSELUG00000018981)	ENSELUG00000019061	ENSELUG00000028148	ENSELUG00000018864	ENSELUG00000031827	ddx21 (ENSELUG00000018856)	kifbp (ENSELUG00000018754)	ENSELUG00000018731	irf2 (ENSELUG00000018821)	vps26a (ENSELUG00000018705)	supv3l1 (ENSELUG00000018676)	ENSELUG00000018629 ##22	tacr2 (ENSELUG00000018583)	tspan15 (ENSELUG00000018553)	rufy2 (ENSELUG00000018505)	HNRNPH3 (ENSELUG00000018424)	pbld (ENSELUG00000018323)	DNA2 (ENSELUG00000018377)	ENSELUG00000018314	SOCS3 (ENSELUG00000018303)	PGS1 (ENSELUG00000018294)	cyth1b (ENSELUG00000018174)	timp2a (ENSELUG00000018132)	sfxn2 (ENSELUG00000018105)	arl3b (ENSELUG00000018031)	trim8b (ENSELUG00000017999)	ENSELUG00000033475
Salmoninae	ANCESTRAL SPECIES	121	ENSGT00950000183191.a.b.i.b	ENSGT00940000159751.j.a.a	ENSGT00940000161811.e.b	ENSGT00940000161716.gc.b	ENSGT00940000159596.h.a	ENSGT00940000178266.b	ENSGT00940000159055.e	ENSGT00390000008820.f.p.a	ENSGT00390000012178	ENSGT00940000160619.l.b	ENSGT00910000144316.e	ENSGT00940000155027.c.b.c	ENSGT00940000165564.d	ENSGT00940000159101.o.a	ENSGT00390000007635.a	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a.db.a	ENSGT00940000159431.k	ENSGT00950000183109.c.a.b.b	ENSGT00940000158544.j	ENSGT00390000003426.y	ENSGT00940000160017.l	ENSGT00410000025556.a.a.a.a.k	ENSGT00530000063407.b.k.b	ENSGT00950000183061.a.a.a.a.a.a.a.a	ENSGT00940000158509.m	ENSGT00390000002110	ENSGT00620000088064.i	ENSGT00390000000080.a.b.d	ENSGT00390000010054.a.o	ENSGT00390000011576.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	492	ENSHHUG00000049188	MYOM2 (ENSHHUG00000049198)	rnaset2 (ENSHHUG00000049232)	ENSHHUG00000049247	mpc1 (ENSHHUG00000049487)	ENSHHUG00000049501	ENSHHUG00000049502	ENSHHUG00000049504	ENSHHUG00000049509	ddx21 (ENSHHUG00000049517)	irf1a (ENSHHUG00000049539)	kifbp (ENSHHUG00000049549)	ENSHHUG00000049576	vps26a (ENSHHUG00000049578)	supv3l1 (ENSHHUG00000049620)	ENSHHUG00000049655 ##22	tacr2 (ENSHHUG00000050067)	tspan15 (ENSHHUG00000050070)	rufy2 (ENSHHUG00000050091)	HNRNPH3 (ENSHHUG00000050329)	PBLD (ENSHHUG00000050372)	DNA2 (ENSHHUG00000050377)	ENSHHUG00000050399
Huchen	MODERN SPECIES	60	ENSHHUG00000033149	myl10 (ENSHHUG00000033155)	COL26A1 (ENSHHUG00000033166)	MMP28 (ENSHHUG00000033177)	ENSHHUG00000033199	AMOT (ENSHHUG00000033208)	pgk1 (ENSHHUG00000033260)	rab24 (ENSHHUG00000033309)	ENSHHUG00000033321	pgrmc1 (ENSHHUG00000033336)	ENSHHUG00000033347	ENSHHUG00000033358	fgfr4 (ENSHHUG00000033387)	znf346 (ENSHHUG00000035959)	ENSHHUG00000035977	ENSHHUG00000035995 ##22	zgc:77151 (ENSHHUG00000036008)	DBN1 (ENSHHUG00000036018)	PRR7 (ENSHHUG00000036032)	GRK6 (ENSHHUG00000036040)	nop16 (ENSHHUG00000036444)	ENSHHUG00000036447	WWC1 (ENSHHUG00000036453)	rars1 (ENSHHUG00000036492)	ENSHHUG00000036566
Salmoninae_a	ANCESTRAL SPECIES	55	ENSGT00940000159751.j.a.a	ENSGT00940000161811.e.b	ENSGT00940000155578.f.a	ENSGT00940000161716.gc.b	ENSGT00940000159596.h.a	ENSGT00940000178266.b	ENSGT00940000159055.e	ENSGT00390000008820.f.p.a	ENSGT00390000012178	ENSGT00940000160619.l.b	ENSGT00910000144316.e	ENSGT00940000155027.c.b.c	ENSGT00940000165564.d	ENSGT00940000159101.o.a	ENSGT00390000007635.a	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a.db.a	ENSGT00940000159431.k	ENSGT00950000183109.c.a.b.b	ENSGT00940000158544.j	ENSGT00390000003426.y	ENSGT00940000160017.l	ENSGT00410000025556.a.a.a.a.k	ENSGT00530000063407.b.k.b	ENSGT00950000183061.a.a.a.a.a.a.a.a	ENSGT00940000158509.m	ENSGT00390000002110	ENSGT00620000088064.i	ENSGT00390000000080.a.b.d	ENSGT00390000010054.a.o	ENSGT00390000011576.b
Salmo	ANCESTRAL SPECIES	13	ENSGT00950000183191.a.b.i.b	ENSGT00940000159751.j.a.a	ENSGT00940000155578.f.a	ENSGT00940000161716.gc.b	ENSGT00940000159596.h.a	ENSGT00940000178266.b	ENSGT00940000159055.e	ENSGT00390000008820.f.p.a	ENSGT00390000012178	ENSGT00940000160619.l.b	ENSGT00910000144316.e	ENSGT00940000155027.c.b.c	ENSGT00940000165564.d	ENSGT00940000159101.o.a	ENSGT00390000007635.a	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a.db.a	ENSGT00940000159431.k	ENSGT00940000167475	ENSGT00940000158544.j	ENSGT00390000003426.y	ENSGT00940000160017.l	ENSGT00410000025556.a.a.a.a.k	ENSGT00530000063407.b.k.b	ENSGT00950000183061.a.a.a.a.a.a.a.a	ENSGT00940000158509.m	ENSGT00390000002110	ENSGT00620000088064.i	ENSGT00390000000080.a.b.d	ENSGT00390000010054.a.o	ENSGT00390000011576.b
River trout	MODERN SPECIES	6	SH2B2 (ENSSTUG00000005484)	CUX1 (ENSSTUG00000005523)	ENSSTUG00000005709	COL26A1 (ENSSTUG00000005720)	MMP28 (ENSSTUG00000005734)	ENSSTUG00000005746	AMOT (ENSSTUG00000005756)	pgk1 (ENSSTUG00000005810)	ENSSTUG00000006241	pgrmc1 (ENSSTUG00000006250)	rab24 (ENSSTUG00000006263)	NSD1 (ENSSTUG00000006368)	fgfr4 (ENSSTUG00000006565)	znf346 (ENSSTUG00000009553)	ENSSTUG00000009566	ENSSTUG00000009606 ##22	zgc:77151 (ENSSTUG00000009620)	DBN1 (ENSSTUG00000009635)	ENSSTUG00000009685	GRK6 (ENSSTUG00000009729)	nop16 (ENSSTUG00000011307)	ENSSTUG00000011333	WWC1 (ENSSTUG00000011373)	ENSSTUG00000012220	sgcd (ENSSTUG00000012246)	ENSSTUG00000012262	ENSSTUG00000012274	mrpl22 (ENSSTUG00000012277)	cnot8 (ENSSTUG00000012387)	FAM114A2 (ENSSTUG00000012410)	ENSSTUG00000012487
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000115717	ENSSSAG00000097226	ENSSSAG00000010765	COL26A1 (ENSSSAG00000010830)	ENSSSAG00000110154	ENSSSAG00000116332	ENSSSAG00000010914	ENSSSAG00000011384	RAB24 (ENSSSAG00000088116)	ENSSSAG00000015544	NSD1 (ENSSSAG00000015624)	fgfr4 (ENSSSAG00000017777)	znf346 (ENSSSAG00000055898)	ENSSSAG00000055906	ENSSSAG00000097850	ENSSSAG00000055917 ##22	zgc:77151 (ENSSSAG00000055923)	DBN1 (ENSSSAG00000055932)	ENSSSAG00000110178	ENSSSAG00000055989	nop16 (ENSSSAG00000101036)	ENSSSAG00000119696	ENSSSAG00000057962	rars1 (ENSSSAG00000058117)	ENSSSAG00000058183	sgcd (ENSSSAG00000058211)	ENSSSAG00000109016	mrpl22 (ENSSSAG00000058260)	ENSSSAG00000100170	GEMIN5 (ENSSSAG00000102970)	cnot8 (ENSSSAG00000058310)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00950000183191.a.b.i.b	ENSGT00940000159751.j.a.a	ENSGT00940000161811.e.b	ENSGT00940000165137	ENSGT00940000159596.h.a	ENSGT00940000178266.b	ENSGT00940000159055.e	ENSGT00390000008820.f.p.a	ENSGT00390000012178	ENSGT00940000160619.l.b	ENSGT00910000144316.e	ENSGT00940000155027.c.b.c	ENSGT00940000165564.d	ENSGT00940000159101.o.a	ENSGT00390000007635.a	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a.db.a	ENSGT00940000159431.k	ENSGT00950000183109.c.a.b.b	ENSGT00940000158544.j	ENSGT00390000003426.y	ENSGT00940000160017.l	ENSGT00410000025556.a.a.a.a.k	ENSGT00530000063407.b.k.b	ENSGT00950000183061.a.a.a.a.a.a.a.a	ENSGT00940000158509.m	ENSGT00390000002110	ENSGT00390000000080.a.b.d	ENSGT00390000010054.a.o	ENSGT00390000011576.b	ENSGT00940000156690.d
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00950000183191.a.b.i.b	ENSGT00940000159751.j.a.a	ENSGT00940000161811.e.b	ENSGT00940000165137	ENSGT00940000159596.h.a	ENSGT00940000178266.a.a	ENSGT00940000159055.e	ENSGT00390000008820.f.p.a	ENSGT00390000012178	ENSGT00940000160619.l.b	ENSGT00910000144316.e	ENSGT00940000155027.c.b.c	ENSGT00940000165564.d	ENSGT00940000159101.o.a	ENSGT00390000007635.a	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000163584.b.a.a.db.a	ENSGT00940000159431.k	ENSGT00950000183109.c.a.b.b	ENSGT00940000158544.j	ENSGT00390000003426.y	ENSGT00940000160017.l	ENSGT00410000025556.a.a.a.a.k	ENSGT00530000063407.b.k.b	ENSGT00950000183061.a.a.a.a.a.a.a.a	ENSGT00940000158509.m	ENSGT00390000002110	ENSGT00390000000080.a.b.d	ENSGT00390000010054.a.o	ENSGT00390000011576.b	ENSGT00940000156690.d
Coho salmon	MODERN SPECIES	2	angpt2a (ENSOKIG00005038837)	mcph1 (ENSOKIG00005038814)	CSMD1 (ENSOKIG00005036823)	MYOM2 (ENSOKIG00005036074)	rnaset2 (ENSOKIG00005036031)	ENSOKIG00005032852	MPC1 (ENSOKIG00005032589)	ENSOKIG00005032536	ENSOKIG00005032526	DDX21 (ENSOKIG00005032407)	irf1a (ENSOKIG00005032359)	ENSOKIG00005032315	ENSOKIG00005032307	vps26a (ENSOKIG00005032191)	supv3l1 (ENSOKIG00005032050)	ENSOKIG00005029070 ##22	tacr2 (ENSOKIG00005028900)	tspan15 (ENSOKIG00005028880)	rufy2 (ENSOKIG00005027421)	HNRNPH3 (ENSOKIG00005027231)	PBLD (ENSOKIG00005027122)	DNA2 (ENSOKIG00005026830)	ENSOKIG00005026787	ENSOKIG00005026778	SOCS3 (ENSOKIG00005026740)	PGS1 (ENSOKIG00005026704)	cyth1b (ENSOKIG00005026370)	timp2a (ENSOKIG00005026268)	sfxn2 (ENSOKIG00005026217)	arl3b (ENSOKIG00005026170)	trim8b (ENSOKIG00005026154)
Chinook salmon	MODERN SPECIES	33	CUX1 (ENSOTSG00005044729)	myl10 (ENSOTSG00005044724)	ENSOTSG00005044722	MMP28 (ENSOTSG00005044721)	ENSOTSG00005044720	AMOT (ENSOTSG00005044718)	ENSOTSG00005044717	pgk1 (ENSOTSG00005044690)	ENSOTSG00005044689	pgrmc1 (ENSOTSG00005044688)	rab24 (ENSOTSG00005044687)	NSD1 (ENSOTSG00005044684)	fgfr4 (ENSOTSG00005044444)	znf346 (ENSOTSG00005044440)	ENSOTSG00005044437	ENSOTSG00005044436 ##22	zgc:77151 (ENSOTSG00005044435)	DBN1 (ENSOTSG00005044434)	PRR7 (ENSOTSG00005044433)	GRK6 (ENSOTSG00005039877)	nop16 (ENSOTSG00005039848)	ENSOTSG00005039847	WWC1 (ENSOTSG00005038827)	rars1 (ENSOTSG00005036500)	ENSOTSG00005036491	sgcd (ENSOTSG00005036490)	mrpl22 (ENSOTSG00005036485)	cnot8 (ENSOTSG00005036484)	FAM114A2 (ENSOTSG00005036482)	MFAP3 (ENSOTSG00005036481)	ENSOTSG00005036477
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Electric eel	MODERN SPECIES	43	ENSEEEG00000003919	sf3b5 (ENSEEEG00000003920)	oprm1 (ENSEEEG00000003922)	rgs17 (ENSEEEG00000003925)	ENSEEEG00000003936	MAP3K21 (ENSEEEG00000004252)	ENSEEEG00000004258	prim2 (ENSEEEG00000004278)	khdrbs2 (ENSEEEG00000004295)	ENSEEEG00000004299	ENSEEEG00000004319	ENSEEEG00000004325	kifbp (ENSEEEG00000004328)	vps26a (ENSEEEG00000004333)	supv3l1 (ENSEEEG00000004374)	ENSEEEG00000004399 ##22	tacr2 (ENSEEEG00000004846)	tspan15 (ENSEEEG00000004848)	rufy2 (ENSEEEG00000004862)	HNRNPH3 (ENSEEEG00000004918)	ENSEEEG00000004934	ENSEEEG00000004940	nfkb2 (ENSEEEG00000004970)	shld2 (ENSEEEG00000005060)	glud1a (ENSEEEG00000005085)	sncga (ENSEEEG00000005788)	mmrn2a (ENSEEEG00000005790)	bmpr1aa (ENSEEEG00000005795)	ldb3a (ENSEEEG00000005827)	ENSEEEG00000005829	myoz1a (ENSEEEG00000005830)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Cyprininae	ANCESTRAL SPECIES	62														ENSGT00950000183064.a.b.b.fb	ENSGT00390000003100.e	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.A.a.e ##22	ENSGT00940000155512.g.a	ENSGT00940000157973.b	ENSGT00940000155595.a	ENSGT00940000157720.w.a	ENSGT00390000017595.y.b	ENSGT00390000017595.z	ENSGT00780000122010.a	ENSGT00940000167706	ENSGT00940000155061.a.b.k.a.r.b	ENSGT00940000164992.i	ENSGT00390000000854.c.b.b.b	ENSGT00940000181884.b.b	ENSGT00950000183175.A.c.a	ENSGT01030000234633.C.a.c.b
Cyprininae_a	ANCESTRAL SPECIES	148	ENSGT00390000013215.y	ENSGT00940000158236.c	ENSGT00940000155393.d.rd.a	ENSGT00940000157374	ENSGT00940000159629.b.a	ENSGT00940000165457.a.a.b.d.b	ENSGT00390000009790.f	ENSGT00940000157134.k.b	ENSGT00950000183045.A.a.b.g	ENSGT00940000158658.b	ENSGT00390000008787.b.a	ENSGT00390000013819.i	ENSGT00390000000885.d	ENSGT00950000183064.a.b.b.gb.b	ENSGT00390000003100.e	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.A.a.e ##22	ENSGT00940000155512.g.a	ENSGT00940000157973.b	ENSGT00940000155595.a	ENSGT00940000157720.w.a	ENSGT00390000017595.y.b	ENSGT00390000017595.z	ENSGT00780000122010.a	ENSGT00940000155061.a.b.k.a.r.b	ENSGT00940000164992.i	ENSGT00390000000854.c.b.b.b	ENSGT00940000181884.b.b	ENSGT00950000183175.A.c.a	ENSGT01030000234633.C.a.c.b	ENSGT00940000156225.l.b
Common carp reference	MODERN SPECIES	48	rgs17 (ENSCCRG00000058503)	ENSCCRG00000012740	ENSCCRG00000078330	il22ra2 (ENSCCRG00000012913)	ENSCCRG00000058084	prim2 (ENSCCRG00000012924)	khdrbs2 (ENSCCRG00000048962)	ENSCCRG00000071984	ENSCCRG00000013987	ENSCCRG00000030653	kifbp (ENSCCRG00000072370)	ENSCCRG00000036618	srgn (ENSCCRG00000055614)	vps26a (ENSCCRG00000030564)	supv3l1 (ENSCCRG00000030541)	ENSCCRG00000029925 ##22	tacr2 (ENSCCRG00000072790)	tspan15 (ENSCCRG00000043365)	rufy2 (ENSCCRG00000042270)	ENSCCRG00000042254	pbld2 (ENSCCRG00000042249)	pbld (ENSCCRG00000071007)	ENSCCRG00000079933	ENSCCRG00000012997	ENSCCRG00000008068	nfkb2 (ENSCCRG00000010500)	zgc:193505 (ENSCCRG00000022385)	glud1a (ENSCCRG00000022422)	sncga (ENSCCRG00000072385)	mmrn2a (ENSCCRG00000022380)	bmpr1aa (ENSCCRG00000009681)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	312	rgs17 (ENSSGRG00000051673)	PCNX2 (ENSSGRG00000051670)	ENSSGRG00000051669	il22ra2 (ENSSGRG00000051668)	prim2 (ENSSGRG00000051667)	eif3s6ip (ENSSGRG00000051665)	prim2 (ENSSGRG00000051664)	khdrbs2 (ENSSGRG00000051663)	ENSSGRG00000051661	ENSSGRG00000051660	ENSSGRG00000051659	kifbp (ENSSGRG00000051658)	srgn (ENSSGRG00000051657)	vps26a (ENSSGRG00000051653)	supv3l1 (ENSSGRG00000051651)	ENSSGRG00000051650 ##22	hk1 (ENSSGRG00000051007) ##22	tacr2 (ENSSGRG00000050996)	tspan15 (ENSSGRG00000050995)	rufy2 (ENSSGRG00000050730)	HNRNPH3 (ENSSGRG00000050721)	pbld (ENSSGRG00000050617)	DNA2 (ENSSGRG00000050610)	ENSSGRG00000050607	ENSSGRG00000050606	nfkb2 (ENSSGRG00000050352)	shld2 (ENSSGRG00000050346)	shld2 (ENSSGRG00000050344)	glud1a (ENSSGRG00000049981)	zgc:193505 (ENSSGRG00000049966)	sncga (ENSSGRG00000049965)
Golden-line barbel	MODERN SPECIES	853									ENSSGRG00000027167	ENSSGRG00000027164	ENSSGRG00000027162	kifbp (ENSSGRG00000027104)	srgn (ENSSGRG00000027103)	vps26a (ENSSGRG00000026461)	supv3l1 (ENSSGRG00000026389)	ENSSGRG00000024501 ##22	tacr2 (ENSSGRG00000024394)	tspan15 (ENSSGRG00000024386)	ENSSGRG00000024382	rufy2 (ENSSGRG00000024352)	HNRNPH3 (ENSSGRG00000024350)	ENSSGRG00000024349	HNRNPH3 (ENSSGRG00000024346)	pbld2 (ENSSGRG00000024345)	DNA2 (ENSSGRG00000024344)	ENSSGRG00000024343	ENSSGRG00000024093	nfkb2 (ENSSGRG00000023931)	shld2 (ENSSGRG00000023924)	glud1a (ENSSGRG00000023333)	zgc:193505 (ENSSGRG00000023321)
Clupeiformes	ANCESTRAL SPECIES	138	ENSGT00940000158499	ENSGT00390000001491.b	ENSGT00390000007221.a.b	ENSGT00390000000046	ENSGT00940000163077	ENSGT00940000155525	ENSGT00940000176198	ENSGT00940000158658	ENSGT00900000142007	ENSGT00390000008787.b	ENSGT00940000164940.b	ENSGT00500000044903.b	ENSGT00390000013819	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000155595	ENSGT00940000157720	ENSGT00390000017595	ENSGT00780000122010
Denticle herring	MODERN SPECIES	18	ENSDCDG00000029471	ret (ENSDCDG00000029480)	ENSDCDG00000029537	pcbd1 (ENSDCDG00000029543)	sgpl1 (ENSDCDG00000029583)	neurog3 (ENSDCDG00000029958)	pdlim1 (ENSDCDG00000029959)	ENSDCDG00000029967	ENSDCDG00000029995	ENSDCDG00000029998	ENSDCDG00000030003	kifbp (ENSDCDG00000030008)	ENSDCDG00000030010	vps26a (ENSDCDG00000030022)	supv3l1 (ENSDCDG00000030031)	ENSDCDG00000030054 ##22	tacr2 (ENSDCDG00000030348)	tspan15 (ENSDCDG00000030351)	rufy2 (ENSDCDG00000030356)	HNRNPH3 (ENSDCDG00000030423)	PBLD (ENSDCDG00000030428)	PBLD (ENSDCDG00000030430)	DNA2 (ENSDCDG00000030432)	ppm1g (ENSDCDG00000030437)	fam120b (ENSDCDG00000030440)	dld (ENSDCDG00000030444)	phf10 (ENSDCDG00000030542)	ncoa4 (ENSDCDG00000013967)	yipf3 (ENSDCDG00000013998)	LRRC73 (ENSDCDG00000014047)	ENSDCDG00000014063
Atlantic herring	MODERN SPECIES	24	npas2 (ENSCHAG00000002166)	ENSCHAG00000002127	ENSCHAG00000002115	plrdgb (ENSCHAG00000001965)	ENSCHAG00000001927	tmigd1 (ENSCHAG00000001911)	slc47a1 (ENSCHAG00000001782)	slc47a2.1 (ENSCHAG00000001304)	MED31 (ENSCHAG00000001214)	slc13a5a (ENSCHAG00000001061)	SERPINF2 (ENSCHAG00000000992)	snx12 (ENSCHAG00000000942)	rab24 (ENSCHAG00000000878)	fgfr4 (ENSCHAG00000027314)	znf346 (ENSCHAG00000027225)	ENSCHAG00000027183 ##22	ENSCHAG00000027172	NRXN2 (ENSCHAG00000027059)	RASGRP2 (ENSCHAG00000027041)	pygma (ENSCHAG00000026972)	slc22a6l (ENSCHAG00000026948)	ENSCHAG00000026946	nrg2a (ENSCHAG00000026933)	puraa (ENSCHAG00000026931) ##11	zgc:100829 (ENSCHAG00000026929)	CXXC5 (ENSCHAG00000026926)	ube2d2 (ENSCHAG00000026895)	ppp3ca (ENSCHAG00000026774)	dnajc18 (ENSCHAG00000026757)	ENSCHAG00000026755	ENSCHAG00000026753
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Amniota	ANCESTRAL SPECIES	10	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000170705	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT01000000215701	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.f	ENSGT00940000156695.e.b	ENSGT00940000163216
Mammalia	ANCESTRAL SPECIES	34	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000170705	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199	ENSGT00940000155342
Platypus	MODERN SPECIES	16	AAK1 (ENSOANG00000036315)	ANXA4 (ENSOANG00000032037)	ENSOANG00000045991	TGFA (ENSOANG00000045751)	ENSOANG00000048476	SNRPG (ENSOANG00000038295)	PCYOX1 (ENSOANG00000039140)	TIA1 (ENSOANG00000042374)	C2orf42 (ENSOANG00000048542)	ENSOANG00000045284	ENSOANG00000044391	MXD1 (ENSOANG00000038818)	ENSOANG00000045242	ENSOANG00000043850	ENSOANG00000036738	ENSOANG00000036149 ##22	ENSOANG00000036688	SLC4A5 (ENSOANG00000043914)	MTHFD2 (ENSOANG00000039674)	MOB1A (ENSOANG00000045826)	ENSOANG00000042482	TET3 (ENSOANG00000039284)	ENSOANG00000007694	ENSOANG00000000460	ENSOANG00000050199	ENSOANG00000040047	ENSOANG00000021882	ENSOANG00000048785	METTL4 (ENSOANG00000010844)	NDC80 (ENSOANG00000010845)	SMCHD1 (ENSOANG00000002708)
Theria	ANCESTRAL SPECIES	21	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199	ENSGT00940000155342
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199	ENSGT00940000155342
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000170705	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Lesser Egyptian jerboa	MODERN SPECIES	64	Atoh7 (ENSJJAG00000014782)	ENSJJAG00000018983	ENSJJAG00000022736	ENSJJAG00000022466	Dna2 (ENSJJAG00000021501)	Slc25a16 (ENSJJAG00000019315)	Tet1 (ENSJJAG00000023109)	Ccar1 (ENSJJAG00000024055)	ENSJJAG00000017394	ENSJJAG00000023928	ENSJJAG00000023047	Ddx21 (ENSJJAG00000014035)	Kifbp (ENSJJAG00000004794)	ENSJJAG00000011179	Supv3l1 (ENSJJAG00000012919)	ENSJJAG00000017579 ##22	Hk1 (ENSJJAG00000019550) ##22	Tacr2 (ENSJJAG00000023714)	Tspan15 (ENSJJAG00000023437)	ENSJJAG00000007347	Neurog3 (ENSJJAG00000010523)	Col13a1 (ENSJJAG00000011939)	Macroh2a2 (ENSJJAG00000015164)	Aifm2 (ENSJJAG00000013734)	ENSJJAG00000011394	ENSJJAG00000016603	Ppa1 (ENSJJAG00000021599)	Npffr1 (ENSJJAG00000024420)	Lrrc20 (ENSJJAG00000021553)	Eif4ebp2 (ENSJJAG00000017843)	Nodal (ENSJJAG00000019905)
Muroidea	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Cricetinae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Chinese hamster chok1gshd	MODERN SPECIES	229	Tpo (ENSCGRG00001011361)	Sntg2 (ENSCGRG00001008435)	Tmem18 (ENSCGRG00001009444)	Alkal2 (ENSCGRG00001011661)	ENSCGRG00001003399	Sh3yl1 (ENSCGRG00001012436)	Fam110c (ENSCGRG00001001095)	Pla2g10 (ENSCGRG00001006810)	Bfar (ENSCGRG00001018222)	ENSCGRG00001013064	ENSCGRG00001023948	Parn (ENSCGRG00001012096)	Mrtfb (ENSCGRG00001010790)	Ercc4 (ENSCGRG00001003669)	ENSCGRG00001000990	ENSCGRG00001011152 ##22	Shisa9 (ENSCGRG00001023863)	Cpped1 (ENSCGRG00001012402)	Snx29 (ENSCGRG00001004219)	Tnfrsf17 (ENSCGRG00001018459)	Gspt1 (ENSCGRG00001009583)	Rsl1d1 (ENSCGRG00001014989)	Zc3h7a (ENSCGRG00001020639)	Txndc11 (ENSCGRG00001016914)	Snn (ENSCGRG00001001355)	Litaf (ENSCGRG00001018758)	Rmi2 (ENSCGRG00001020594)	ENSCGRG00001021045	Prm3 (ENSCGRG00001001713)	Tnp2 (ENSCGRG00001023391)	Socs1 (ENSCGRG00001007612)
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00950000183755	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00950000183755	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00950000183755	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00540000070023.c.b.a.a.a.a	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Mustelinae	ANCESTRAL SPECIES	31	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935.s	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155901.b	ENSGT00940000155043	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00390000014627	ENSGT00910000146657	ENSGT00940000155276	ENSGT00390000017004.a.b	ENSGT01070000253744.b.a.b	ENSGT00730000111199
Ferret	MODERN SPECIES	310								ENSMPUG00000004731	CCAR1 (ENSMPUG00000004618)	STOX1 (ENSMPUG00000004614)	DDX21 (ENSMPUG00000004603)	KIFBP (ENSMPUG00000004600)	DDX50 (ENSMPUG00000004589)	ENSMPUG00000004519	SUPV3L1 (ENSMPUG00000004499)	ENSMPUG00000004488 ##22	HKDC1 (ENSMPUG00000004472) ##22	HK1 (ENSMPUG00000004457) ##22	TACR2 (ENSMPUG00000004421)	ENSMPUG00000019700	TSPAN15 (ENSMPUG00000004403)	NEUROG3 (ENSMPUG00000019699)	FAM241B (ENSMPUG00000004392)	COL13A1 (ENSMPUG00000004367)	MACROH2A2 (ENSMPUG00000004359)	AIFM2 (ENSMPUG00000004351)	TYSND1 (ENSMPUG00000004346)	SAR1A (ENSMPUG00000004338)	PPA1 (ENSMPUG00000004327)	NPFFR1 (ENSMPUG00000004321)	ENSMPUG00000004315
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Cetacea	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	310															ENSPCTG00005021295	ENSPCTG00005020957 ##22
Sperm whale	MODERN SPECIES	3	ENSPCTG00005017241	ENSPCTG00005017160	ENSPCTG00005017031	ENSPCTG00005016924	ENSPCTG00005016907	ENSPCTG00005016867	ENSPCTG00005016767	ENSPCTG00005016299	ENSPCTG00005016158	ENSPCTG00005016046	GCFC2 (ENSPCTG00005015482)	MRPL19 (ENSPCTG00005015403)	EVA1A (ENSPCTG00005015355)	TACR1 (ENSPCTG00005015229)	POLE4 (ENSPCTG00005015162)	HK2 (ENSPCTG00005015008) ##22	SEMA4F (ENSPCTG00005014463)	ENSPCTG00005014404	M1AP (ENSPCTG00005014351)	DOK1 (ENSPCTG00005014240)	LOXL3 (ENSPCTG00005012638)	HTRA2 (ENSPCTG00005011669)	AUP1 (ENSPCTG00005011089)	DQX1 (ENSPCTG00005010737)	TLX2 (ENSPCTG00005010624)	PCGF1 (ENSPCTG00005010538)	LBX2 (ENSPCTG00005010495)	ENSPCTG00005010341	MRPL53 (ENSPCTG00005010128)	MOGS (ENSPCTG00005010031)	WBP1 (ENSPCTG00005009955)
Sauria	ANCESTRAL SPECIES	8	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043.j	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000165949	ENSGT00940000162658.b	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT01000000215701	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.e.a	ENSGT00940000156695.e.b
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00390000017595	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043.j.b	ENSGT00940000155043.j.a	ENSGT00940000155043.i	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000165949	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT01000000215701	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.e.a	ENSGT00940000156695.e.b	ENSGT00940000163216
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043.j.b	ENSGT00940000155043.j.a	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000165949	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT01000000215701	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.e.a	ENSGT00940000156695.e.b	ENSGT00940000163216
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043.j.b	ENSGT00940000155043.j.a	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000165949	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000154865	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.e.a	ENSGT00940000156695.e.b	ENSGT00940000163216	ENSGT00490000043902
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00940000157720	ENSGT00940000155595	ENSGT00780000122010	ENSGT00940000157520	ENSGT00940000158935	ENSGT00530000063672.a	ENSGT00520000055589.c	ENSGT00940000155043.j.b	ENSGT00940000155043.j.a	ENSGT00390000013819	ENSGT00390000000885	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.E.d.e.a ##22	ENSGT00950000182787.B ##22	ENSGT00950000182787.A ##22	ENSGT00940000155512	ENSGT00940000157973	ENSGT00940000163077	ENSGT00940000154340.B	ENSGT00940000158120	ENSGT00390000004582	ENSGT00940000161045	ENSGT00940000156695.e.a	ENSGT00940000156695.e.b	ENSGT00940000163216	ENSGT00490000043902	ENSGT00940000155245	ENSGT00950000182898.a.a.b
Goode s thornscrub tortoise	MODERN SPECIES	21	MYPN (ENSGEVG00005010658)	ATOH7 (ENSGEVG00005010598)	HNRNPH3 (ENSGEVG00005010551)	RUFY2 (ENSGEVG00005009976)	DNA2 (ENSGEVG00005009371)	SLC25A16 (ENSGEVG00005009187)	TET1 (ENSGEVG00005016213)	CCAR1 (ENSGEVG00005015856)	STOX1 (ENSGEVG00005015754)	ENSGEVG00005015727	ENSGEVG00005015674	KIFBP (ENSGEVG00005015643)	VPS26A (ENSGEVG00005015616)	ENSGEVG00005015603	SUPV3L1 (ENSGEVG00005015316)	ENSGEVG00005015142 ##22	ENSGEVG00005015031 ##22	HK1 (ENSGEVG00005014984) ##22	TSPAN15 (ENSGEVG00005014910)	NEUROG3 (ENSGEVG00005014864)	ENSGEVG00005014837	MACROH2A2 (ENSGEVG00005014809)	AIFM2 (ENSGEVG00005014772)	CHST3 (ENSGEVG00005014714)	ENSGEVG00005014597	ENSGEVG00005014429	ENSGEVG00005014038	ENSGEVG00005013966	C10orf105 (ENSGEVG00005013952)	ENSGEVG00005012881	SLC29A3 (ENSGEVG00005012748)
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Pink-footed goose	MODERN SPECIES	130	SIRT1 (ENSABRG00000019729)	HERC4 (ENSABRG00000019785)	MYPN (ENSABRG00000020280)	ATOH7 (ENSABRG00000020338)	PBLD (ENSABRG00000020345)	HNRNPH3 (ENSABRG00000020380)	RUFY2 (ENSABRG00000020445)	DNA2 (ENSABRG00000020604)	ENSABRG00000020783	CCAR1 (ENSABRG00000020810)	DDX21 (ENSABRG00000021081)	ENSABRG00000021145	KIFBP (ENSABRG00000021175)	VPS26A (ENSABRG00000021186)	SUPV3L1 (ENSABRG00000021231)	ENSABRG00000021390 ##22	TACR2 (ENSABRG00000021688)	TSPAN15 (ENSABRG00000021694)	MACROH2A2 (ENSABRG00000021712)	AIFM2 (ENSABRG00000021773)	CHST3 (ENSABRG00000021774)	ENSABRG00000021776	ENSABRG00000021790	CDH23 (ENSABRG00000021801)	ENSABRG00000021875	SLC29A3 (ENSABRG00000021896)	UNC5B (ENSABRG00000021898)	PCBD1 (ENSABRG00000021907)	SGPL1 (ENSABRG00000021909)	ENSABRG00000021912	ENSABRG00000021913
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182787.E.d.e.a ##22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	1393																ENSPMAG00000000082 ##22	ENSPMAG00000000081
Lamprey	MODERN SPECIES	1620														CNNM4 (ENSPMAG00000007567)	PLPP5 (ENSPMAG00000007558)	ENSPMAG00000007525 ##22	add1 (ENSPMAG00000007509)	dpysl2b (ENSPMAG00000007494)