Amniota ANCESTRAL SPECIES 3 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000161205 ENSGT00940000161637 Mammalia ANCESTRAL SPECIES 3 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C Theria ANCESTRAL SPECIES 7 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 Eutheria ANCESTRAL SPECIES 30 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Euarchontoglires ANCESTRAL SPECIES 7 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.h #26 ENSGT00940000154931 #27 ENSGT00940000154519.g.b ##26 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Glires ANCESTRAL SPECIES 5 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Lagomorpha ANCESTRAL SPECIES 58 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.h #26 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 Rabbit MODERN SPECIES 448 NRN1 (ENSOCUG00000008677) #7 FARS2 (ENSOCUG00000014165) #8 LYRM4 (ENSOCUG00000023362) #9 CDYL (ENSOCUG00000004407) #10 RPP40 (ENSOCUG00000000354) #11 ENSOCUG00000030173 #12 ENSOCUG00000032771 #13 ENSOCUG00000016155 #14 ENSOCUG00000016148 #15 FAM217A (ENSOCUG00000016142) #16 PRPF4B (ENSOCUG00000000425) #17 FAM50B (ENSOCUG00000003308) #18 PXDC1 (ENSOCUG00000021247) #19 SLC22A23 (ENSOCUG00000010469) #20 ENSOCUG00000010464 #21 TUBB2B (ENSOCUG00000009827) #22 BPHL (ENSOCUG00000009825) #23 RIPK1 (ENSOCUG00000011791) #24 NQO2 (ENSOCUG00000016499) #25 ENSOCUG00000006216 #26 SERPINB9 (ENSOCUG00000005091) #27 ENSOCUG00000005088 #28 WRNIP1 (ENSOCUG00000005081) #29 ENSOCUG00000005076 #30 GMDS (ENSOCUG00000015142) #31 Pika DUPLICATION Pika MODERN SPECIES 1475 TUBB2B (ENSOPRG00000000403) #22 TUBB2A (ENSOPRG00000000400) #22 ENSOPRG00000000393 #23 Pika MODERN SPECIES 1475 TUBB2B (ENSOPRG00000000403) #22 TUBB2A (ENSOPRG00000000400) #22 ENSOPRG00000000393 #23 Rodentia ANCESTRAL SPECIES 6 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Rodentia_A ANCESTRAL SPECIES 26 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.c.a.b #27 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Sciuridae ANCESTRAL SPECIES 1 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.c.a.b #27 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.ab ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 17 ENSSVLG00005004818 MPLKIP (ENSSVLG00005004837) SUGCT (ENSSVLG00005004898) ENSSVLG00005005063 ENSSVLG00005005081 INHBA (ENSSVLG00005005151) GLI3 (ENSSVLG00005005178) C7orf25 (ENSSVLG00005005209) PSMA2 (ENSSVLG00005005237) MRPL32 (ENSSVLG00005005303) ENSSVLG00005005320 HECW1 (ENSSVLG00005005468) STK17A (ENSSVLG00005005990) COA1 (ENSSVLG00005006028) BLVRA (ENSSVLG00005006049) ENSSVLG00005006086 #22 MRPS24 (ENSSVLG00005006180) URGCP (ENSSVLG00005006226) ENSSVLG00005006336 UBE2D4 (ENSSVLG00005006358) DBNL (ENSSVLG00005006493) PGAM2 (ENSSVLG00005006699) POLM (ENSSVLG00005006728) AEBP1 (ENSSVLG00005006770) POLD2 (ENSSVLG00005006846) MYL7 (ENSSVLG00005006900) GCK (ENSSVLG00005006971) ENSSVLG00005007143 CAMK2B (ENSSVLG00005007607) NUDCD3 (ENSSVLG00005008781) NPC1L1 (ENSSVLG00005008888) Eurasian red squirrel MODERN SPECIES 2 BDNF (ENSSVLG00005007577) KIF18A (ENSSVLG00005007495) ENSSVLG00005007473 METTL15 (ENSSVLG00005007460) KCNA4 (ENSSVLG00005007441) FSHB (ENSSVLG00005007418) ARL14EP (ENSSVLG00005007404) MPPED2 (ENSSVLG00005007385) ENSSVLG00005007367 DCDC1 (ENSSVLG00005007148) DNAJC24 (ENSSVLG00005007079) IMMP1L (ENSSVLG00005007051) ELP4 (ENSSVLG00005007005) PAX6 (ENSSVLG00005006723) ENSSVLG00005006643 ENSSVLG00005006612 #22 RCN1 (ENSSVLG00005006575) ENSSVLG00005006549 WT1 (ENSSVLG00005006232) EIF3M (ENSSVLG00005006089) CCDC73 (ENSSVLG00005005944) PRRG4 (ENSSVLG00005005895) QSER1 (ENSSVLG00005005823) DEPDC7 (ENSSVLG00005005722) TCP11L1 (ENSSVLG00005005675) CSTF3 (ENSSVLG00005005518) ENSSVLG00005005475 HIPK3 (ENSSVLG00005005422) KIAA1549L (ENSSVLG00005005254) C11orf91 (ENSSVLG00005005211) ENSSVLG00005005193 Eurasian red squirrel MODERN SPECIES 16 NRN1 (ENSSVLG00005008393) #7 FARS2 (ENSSVLG00005008373) #8 ENSSVLG00005008346 LYRM4 (ENSSVLG00005008312) #9 PPP1R3G (ENSSVLG00005008297) RPP40 (ENSSVLG00005008216) #11 CDYL (ENSSVLG00005008158) #10 ECI2 (ENSSVLG00005008033) #14 ENSSVLG00005007999 #15 ENSSVLG00005007911 #16 PRPF4B (ENSSVLG00005007879) #17 FAM50B (ENSSVLG00005007859) #18 PXDC1 (ENSSVLG00005007821) #19 SLC22A23 (ENSSVLG00005007747) #20 PSMG4 (ENSSVLG00005007683) #21 TUBB2B (ENSSVLG00005007652) #22 TUBB2A (ENSSVLG00005007615) #22 ENSSVLG00005007569 #23 RIPK1 (ENSSVLG00005007529) #24 NQO2 (ENSSVLG00005007475) #25 SERPINB6 (ENSSVLG00005007395) ##26 ENSSVLG00005007366 ENSSVLG00005006719 #27 ENSSVLG00005006449 #27 SERPINB1 (ENSSVLG00005006417) #28 WRNIP1 (ENSSVLG00005006348) #29 ENSSVLG00005006323 MYLK4 (ENSSVLG00005006200) #30 ENSSVLG00005006132 GMDS (ENSSVLG00005014861) #31 FOXC1 (ENSSVLG00005014837) Eurasian red squirrel MODERN SPECIES 16 FARS2 (ENSSVLG00005008373) #8 ENSSVLG00005008346 LYRM4 (ENSSVLG00005008312) #9 PPP1R3G (ENSSVLG00005008297) RPP40 (ENSSVLG00005008216) #11 CDYL (ENSSVLG00005008158) #10 ECI2 (ENSSVLG00005008033) #14 ENSSVLG00005007999 #15 ENSSVLG00005007911 #16 PRPF4B (ENSSVLG00005007879) #17 FAM50B (ENSSVLG00005007859) #18 PXDC1 (ENSSVLG00005007821) #19 SLC22A23 (ENSSVLG00005007747) #20 PSMG4 (ENSSVLG00005007683) #21 TUBB2B (ENSSVLG00005007652) #22 TUBB2A (ENSSVLG00005007615) #22 ENSSVLG00005007569 #23 RIPK1 (ENSSVLG00005007529) #24 NQO2 (ENSSVLG00005007475) #25 SERPINB6 (ENSSVLG00005007395) ##26 ENSSVLG00005007366 ENSSVLG00005006719 #27 ENSSVLG00005006449 #27 SERPINB1 (ENSSVLG00005006417) #28 WRNIP1 (ENSSVLG00005006348) #29 ENSSVLG00005006323 MYLK4 (ENSSVLG00005006200) #30 ENSSVLG00005006132 GMDS (ENSSVLG00005014861) #31 FOXC1 (ENSSVLG00005014837) FOXF2 (ENSSVLG00005014790) Eurasian red squirrel MODERN SPECIES 11 OR4Q3 (ENSSVLG00005002974) ENSSVLG00005002963 ENSSVLG00005002955 ENSSVLG00005002945 ENSSVLG00005002922 ENSSVLG00005002909 ENSSVLG00005002897 ENSSVLG00005002883 OR11G2 (ENSSVLG00005002875) ENSSVLG00005002866 OR11H6 (ENSSVLG00005002859) OR11H4 (ENSSVLG00005002848) TTC5 (ENSSVLG00005002830) CCNB1IP1 (ENSSVLG00005002813) PARP2 (ENSSVLG00005002754) ENSSVLG00005002730 #22 TEP1 (ENSSVLG00005002176) KLHL33 (ENSSVLG00005001900) OSGEP (ENSSVLG00005001856) APEX1 (ENSSVLG00005001829) PIP4P1 (ENSSVLG00005001794) PNP (ENSSVLG00005001773) RNASE10 (ENSSVLG00005001759) ENSSVLG00005001749 ENSSVLG00005001741 RNASE11 (ENSSVLG00005001735) RNASE12 (ENSSVLG00005001727) OR6S1 (ENSSVLG00005001715) ANG (ENSSVLG00005001703) RNASE4 (ENSSVLG00005001692) ENSSVLG00005001670 Marmotini DUPLICATION Marmotini DUPLICATION Marmotini ANCESTRAL SPECIES 37 ENSGT00390000000878.h.a ENSGT00390000014833 ENSGT00940000164650 ENSGT00390000011295.b ENSGT00940000155602 ENSGT00390000000118 ENSGT00950000183188.B ENSGT00390000015035 ENSGT00940000154957.B ENSGT00940000157167.n ENSGT00940000153470.a.a.a.b.m.a ENSGT00940000154150.gd.a #22 ENSGT00770000120611.B ENSGT00390000007287 ENSGT00940000156475 ENSGT00940000158500 ENSGT00940000155880 ENSGT00940000155957 ENSGT00390000009405.a.a.a.b.a.b.a.b ENSGT00390000015236 ENSGT00390000003271 ENSGT00950000182892.a.b.b ENSGT00940000154431.e.b ENSGT00940000153305.c.e.b ENSGT00940000156007 ENSGT00390000017856.a ENSGT00940000157315 Marmotini_b ANCESTRAL SPECIES 26 ENSGT00390000014833 ENSGT00390000011295.b ENSGT00940000155602 ENSGT00390000000118 ENSGT00950000183188.B ENSGT00390000015035 ENSGT00940000154957.B ENSGT00940000157167.n ENSGT01030000235027 ENSGT00940000154530.w ENSGT00940000153470.a.a.a.b.m.a ENSGT00940000154150.gd.a #22 ENSGT00770000120611.B ENSGT00390000007287 ENSGT00940000156475 ENSGT00940000158500 ENSGT00940000155880 ENSGT00940000155957 ENSGT00390000009405.a.a.a.b.a.b.a.b ENSGT00390000015236 ENSGT00390000003271 ENSGT00950000182892.a.b.b ENSGT00940000154431.e.b ENSGT00940000153305.c.e.b ENSGT00940000156007 ENSGT00390000017856.a ENSGT00940000157315 Squirrel DUPLICATION Squirrel MODERN SPECIES 78 TOMM7 (ENSSTOG00000008694) HYCC1 (ENSSTOG00000027983) KLHL7 (ENSSTOG00000008470) NUP42 (ENSSTOG00000008486) GPNMB (ENSSTOG00000008499) MALSU1 (ENSSTOG00000027376) IGF2BP3 (ENSSTOG00000008519) TRA2A (ENSSTOG00000012073) ENSSTOG00000030692 ENSSTOG00000032668 CCDC126 (ENSSTOG00000021255) ENSSTOG00000029732 ENSSTOG00000020371 #22 ENSSTOG00000014113 ENSSTOG00000027960 #22 STK31 (ENSSTOG00000003577) ENSSTOG00000033576 ENSSTOG00000021917 NPY (ENSSTOG00000020410) PALS2 (ENSSTOG00000001908) ENSSTOG00000014905 OSBPL3 (ENSSTOG00000001755) C7orf31 (ENSSTOG00000008859) NPVF (ENSSTOG00000008873) NFE2L3 (ENSSTOG00000014758) ENSSTOG00000006202 CBX3 (ENSSTOG00000006223) SNX10 (ENSSTOG00000024131) Squirrel MODERN SPECIES 78 HOXA1 (ENSSTOG00000024209) SKAP2 (ENSSTOG00000021247) SNX10 (ENSSTOG00000024131) CBX3 (ENSSTOG00000006223) ENSSTOG00000006202 NFE2L3 (ENSSTOG00000014758) NPVF (ENSSTOG00000008873) C7orf31 (ENSSTOG00000008859) OSBPL3 (ENSSTOG00000001755) ENSSTOG00000014905 PALS2 (ENSSTOG00000001908) NPY (ENSSTOG00000020410) ENSSTOG00000021917 ENSSTOG00000033576 STK31 (ENSSTOG00000003577) ENSSTOG00000027960 #22 ENSSTOG00000014113 ENSSTOG00000020371 #22 ENSSTOG00000029732 CCDC126 (ENSSTOG00000021255) ENSSTOG00000032668 ENSSTOG00000030692 TRA2A (ENSSTOG00000012073) IGF2BP3 (ENSSTOG00000008519) MALSU1 (ENSSTOG00000027376) GPNMB (ENSSTOG00000008499) NUP42 (ENSSTOG00000008486) KLHL7 (ENSSTOG00000008470) HYCC1 (ENSSTOG00000027983) TOMM7 (ENSSTOG00000008694) Alpin marmot MODERN SPECIES 26 ENSMMMG00000005021 ENSMMMG00000005025 TOMM7 (ENSMMMG00000005059) ENSMMMG00000005078 HYCC1 (ENSMMMG00000005151) ENSMMMG00000005220 KLHL7 (ENSMMMG00000005243) NUP42 (ENSMMMG00000005252) GPNMB (ENSMMMG00000005258) MALSU1 (ENSMMMG00000005281) IGF2BP3 (ENSMMMG00000005303) TRA2A (ENSMMMG00000005330) ENSMMMG00000005357 ENSMMMG00000005362 #22 ENSMMMG00000005429 STK31 (ENSMMMG00000005447) ENSMMMG00000005635 NPY (ENSMMMG00000005649) PALS2 (ENSMMMG00000005665) GSDME (ENSMMMG00000005813) OSBPL3 (ENSMMMG00000005837) ENSMMMG00000006125 C7orf31 (ENSMMMG00000006134) NPVF (ENSMMMG00000006151) ENSMMMG00000006190 ENSMMMG00000006197 ENSMMMG00000006360 SNX10 (ENSMMMG00000006398) ENSMMMG00000006429 Marmotini ANCESTRAL SPECIES 37 ENSGT00390000015821 ENSGT00530000063186.b.a ENSGT00940000155450 ENSGT00390000001319 ENSGT00940000160556 ENSGT00530000063608.A ENSGT00940000155909 ENSGT00940000156004 ENSGT00940000161552 ENSGT00940000156782.c ENSGT00940000162844 ENSGT00520000055647.a ENSGT00720000108792.A ENSGT00940000161703 ENSGT00940000154150.gd.b #22 ENSGT00940000157781 ENSGT00390000014376 ENSGT00940000161393 ENSGT00390000000706 ENSGT00940000162104 ENSGT00940000156328.b ENSGT00940000158092 ENSGT00940000157394 ENSGT00940000154872.C ENSGT00940000161026 ENSGT00730000111762 ENSGT01030000234607.A.a.b.a ENSGT00940000161501 ENSGT00390000016168.a ENSGT00940000158053 Marmotini_b ANCESTRAL SPECIES 26 ENSGT00940000161703 ENSGT00940000154150.gd.b #22 ENSGT00940000157781 ENSGT00390000014376 ENSGT00940000161393 ENSGT00390000000706 ENSGT00940000162104 ENSGT00940000156328.b ENSGT00940000158092 ENSGT00940000157394 ENSGT00940000154872.C ENSGT00940000161026 ENSGT00730000111762 ENSGT01030000234607.A.a.b.a ENSGT00940000161501 ENSGT00390000016168.a ENSGT00940000158053 Arctic ground squirrel MODERN SPECIES 499 ABCA13 (ENSUPAG00010000302) ENSUPAG00010000185 #22 UPP1 (ENSUPAG00010000153) SUN3 (ENSUPAG00010000131) C7orf57 (ENSUPAG00010000060) HUS1 (ENSUPAG00010000045) PKD1L1 (ENSUPAG00010022631) Squirrel MODERN SPECIES 78 ENSSTOG00000032455 ENSSTOG00000026135 #22 UPP1 (ENSSTOG00000005502) C7orf57 (ENSSTOG00000005482) SUN3 (ENSSTOG00000005471) HUS1 (ENSSTOG00000027204) ENSSTOG00000005345 TNS3 (ENSSTOG00000015793) IGFBP3 (ENSSTOG00000008762) IGFBP1 (ENSSTOG00000008746) ADCY1 (ENSSTOG00000008713) ENSSTOG00000015205 RAMP3 (ENSSTOG00000025331) ENSSTOG00000020680 TBRG4 (ENSSTOG00000008370) NACAD (ENSSTOG00000022804) CCM2 (ENSSTOG00000026702) Alpin marmot MODERN SPECIES 26 ENSMMMG00000015809 ENSMMMG00000015788 ENSMMMG00000015785 ENSMMMG00000015775 ENSMMMG00000015722 GRB10 (ENSMMMG00000015688) DDC (ENSMMMG00000015645) FIGNL1 (ENSMMMG00000015635) IKZF1 (ENSMMMG00000015562) SPATA48 (ENSMMMG00000015542) ZPBP (ENSMMMG00000015506) VWC2 (ENSMMMG00000015492) ENSMMMG00000015482 ENSMMMG00000015465 ABCA13 (ENSMMMG00000015281) ENSMMMG00000015221 #22 UPP1 (ENSMMMG00000015208) C7orf57 (ENSMMMG00000015182) SUN3 (ENSMMMG00000015174) HUS1 (ENSMMMG00000015160) PKD1L1 (ENSMMMG00000015029) TNS3 (ENSMMMG00000014995) ENSMMMG00000014987 ENSMMMG00000014980 ENSMMMG00000014975 IGFBP3 (ENSMMMG00000014868) IGFBP1 (ENSMMMG00000014859) ADCY1 (ENSMMMG00000014821) RAMP3 (ENSMMMG00000014813) ENSMMMG00000014809 ENSMMMG00000014801 Marmotini ANCESTRAL SPECIES 40 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.hd #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 Alpin marmot MODERN SPECIES 36 F13A1 (ENSMMMG00000014594) NRN1 (ENSMMMG00000014586) #7 FARS2 (ENSMMMG00000014567) #8 LYRM4 (ENSMMMG00000014551) #9 PPP1R3G (ENSMMMG00000014548) RPP40 (ENSMMMG00000014521) #11 CDYL (ENSMMMG00000014357) #10 ECI2 (ENSMMMG00000014301) #14 ENSMMMG00000014296 #15 FAM217A (ENSMMMG00000014281) #16 PRPF4B (ENSMMMG00000014263) #17 FAM50B (ENSMMMG00000014258) #18 ENSMMMG00000014254 #19 ENSMMMG00000014241 SLC22A23 (ENSMMMG00000014224) #20 TUBB2B (ENSMMMG00000014205) #22 BPHL (ENSMMMG00000014194) #23 RIPK1 (ENSMMMG00000014179) #24 Marmotini_b ANCESTRAL SPECIES 68 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00390000015826.x ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.hd #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 350 PPP1R3G (ENSUPAG00010010716) RPP40 (ENSUPAG00010010701) #11 ENSUPAG00010010692 CDYL (ENSUPAG00010010685) #10 ECI2 (ENSUPAG00010010667) #14 ENSUPAG00010010661 #15 FAM217A (ENSUPAG00010010641) #16 PRPF4B (ENSUPAG00010010629) #17 FAM50B (ENSUPAG00010010626) #18 PXDC1 (ENSUPAG00010010623) #19 ENSUPAG00010010614 SLC22A23 (ENSUPAG00010010597) #20 PSMG4 (ENSUPAG00010010591) #21 ENSUPAG00010010587 TUBB2B (ENSUPAG00010010579) #22 ENSUPAG00010010577 #22 BPHL (ENSUPAG00010010568) #23 RIPK1 (ENSUPAG00010010546) #24 Arctic ground squirrel MODERN SPECIES 350 PPP1R3G (ENSUPAG00010010716) RPP40 (ENSUPAG00010010701) #11 ENSUPAG00010010692 CDYL (ENSUPAG00010010685) #10 ECI2 (ENSUPAG00010010667) #14 ENSUPAG00010010661 #15 FAM217A (ENSUPAG00010010641) #16 PRPF4B (ENSUPAG00010010629) #17 FAM50B (ENSUPAG00010010626) #18 PXDC1 (ENSUPAG00010010623) #19 ENSUPAG00010010614 SLC22A23 (ENSUPAG00010010597) #20 PSMG4 (ENSUPAG00010010591) #21 ENSUPAG00010010587 TUBB2B (ENSUPAG00010010579) #22 ENSUPAG00010010577 #22 BPHL (ENSUPAG00010010568) #23 RIPK1 (ENSUPAG00010010546) #24 Squirrel DUPLICATION Squirrel MODERN SPECIES 134 ENSSTOG00000024647 #7 FARS2 (ENSSTOG00000012156) #8 LYRM4 (ENSSTOG00000026736) #9 PPP1R3G (ENSSTOG00000021636) RPP40 (ENSSTOG00000011199) #11 CDYL (ENSSTOG00000011187) #10 ECI2 (ENSSTOG00000004305) #14 ENSSTOG00000030065 #15 FAM217A (ENSSTOG00000030768) #16 PRPF4B (ENSSTOG00000004256) #17 FAM50B (ENSSTOG00000026905) #18 PXDC1 (ENSSTOG00000027169) #19 ENSSTOG00000030156 SLC22A23 (ENSSTOG00000031179) #20 PSMG4 (ENSSTOG00000020187) #21 TUBB2B (ENSSTOG00000022186) #22 TUBB2A (ENSSTOG00000024688) #22 BPHL (ENSSTOG00000001554) #23 RIPK1 (ENSSTOG00000001542) #24 Squirrel MODERN SPECIES 134 FARS2 (ENSSTOG00000012156) #8 LYRM4 (ENSSTOG00000026736) #9 PPP1R3G (ENSSTOG00000021636) RPP40 (ENSSTOG00000011199) #11 CDYL (ENSSTOG00000011187) #10 ECI2 (ENSSTOG00000004305) #14 ENSSTOG00000030065 #15 FAM217A (ENSSTOG00000030768) #16 PRPF4B (ENSSTOG00000004256) #17 FAM50B (ENSSTOG00000026905) #18 PXDC1 (ENSSTOG00000027169) #19 ENSSTOG00000030156 SLC22A23 (ENSSTOG00000031179) #20 PSMG4 (ENSSTOG00000020187) #21 TUBB2B (ENSSTOG00000022186) #22 TUBB2A (ENSSTOG00000024688) #22 BPHL (ENSSTOG00000001554) #23 RIPK1 (ENSSTOG00000001542) #24 Hystricomorpha ANCESTRAL SPECIES 42 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000036093 ENSHGLG00000020343 ENSHGLG00000004389 #8 ENSHGLG00000038262 PPP1R3G (ENSHGLG00000041006) ENSHGLG00000040678 #9 RPP40 (ENSHGLG00000004871) #11 ENSHGLG00000005262 #10 ENSHGLG00000038867 ECI2 (ENSHGLG00000005614) #14 PRPF4B (ENSHGLG00000005945) #17 FAM50B (ENSHGLG00000006289) #18 PXDC1 (ENSHGLG00000006650) #19 SLC22A23 (ENSHGLG00000007033) #20 ENSHGLG00000007366 TUBB2B (ENSHGLG00000007696) #22 ENSHGLG00000043950 #22 BPHL (ENSHGLG00000008018) #23 RIPK1 (ENSHGLG00000008330) #24 ENSHGLG00000045779 #25 SERPINB6 (ENSHGLG00000015274) ##26 ENSHGLG00000017487 #27 SERPINB1 (ENSHGLG00000032738) #28 WRNIP1 (ENSHGLG00000014216) #29 ENSHGLG00000040911 ENSHGLG00000014288 #30 ENSHGLG00000033368 GMDS (ENSHGLG00000014454) #31 FOXC1 (ENSHGLG00000040750) FOXF2 (ENSHGLG00000007914) FOXQ1 (ENSHGLG00000007951) Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000020343 ENSHGLG00000004389 #8 ENSHGLG00000038262 PPP1R3G (ENSHGLG00000041006) ENSHGLG00000040678 #9 RPP40 (ENSHGLG00000004871) #11 ENSHGLG00000005262 #10 ENSHGLG00000038867 ECI2 (ENSHGLG00000005614) #14 PRPF4B (ENSHGLG00000005945) #17 FAM50B (ENSHGLG00000006289) #18 PXDC1 (ENSHGLG00000006650) #19 SLC22A23 (ENSHGLG00000007033) #20 ENSHGLG00000007366 TUBB2B (ENSHGLG00000007696) #22 ENSHGLG00000043950 #22 BPHL (ENSHGLG00000008018) #23 RIPK1 (ENSHGLG00000008330) #24 ENSHGLG00000045779 #25 SERPINB6 (ENSHGLG00000015274) ##26 ENSHGLG00000017487 #27 SERPINB1 (ENSHGLG00000032738) #28 WRNIP1 (ENSHGLG00000014216) #29 ENSHGLG00000040911 ENSHGLG00000014288 #30 ENSHGLG00000033368 GMDS (ENSHGLG00000014454) #31 FOXC1 (ENSHGLG00000040750) FOXF2 (ENSHGLG00000007914) FOXQ1 (ENSHGLG00000007951) ENSHGLG00000044630 Hystricomorpha_a ANCESTRAL SPECIES 48 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B.b #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 ENSGT01100000263474.a.b.b.f Guinea pig MODERN SPECIES 38 SSR1 (ENSCPOG00000039953) RREB1 (ENSCPOG00000014380) LY86 (ENSCPOG00000012001) F13A1 (ENSCPOG00000005276) NRN1 (ENSCPOG00000021547) #7 FARS2 (ENSCPOG00000003994) #8 LYRM4 (ENSCPOG00000038899) #9 RPP40 (ENSCPOG00000005855) #11 CDYL (ENSCPOG00000005847) #10 ECI2 (ENSCPOG00000004788) #14 PRPF4B (ENSCPOG00000004775) #17 FAM50B (ENSCPOG00000000148) #18 PXDC1 (ENSCPOG00000038768) #19 SLC22A23 (ENSCPOG00000010470) #20 PSMG4 (ENSCPOG00000026747) #21 TUBB2B (ENSCPOG00000039814) #22 BPHL (ENSCPOG00000036729) #23 RIPK1 (ENSCPOG00000005195) #24 NQO2 (ENSCPOG00000033205) #25 SERPINB6 (ENSCPOG00000008254) ##26 ENSCPOG00000024499 #27 ENSCPOG00000040114 #27 ENSCPOG00000037377 #27 ENSCPOG00000021276 #27 ENSCPOG00000030607 #27 Hystricomorpha_b ANCESTRAL SPECIES 58 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000170978 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Degu DUPLICATION Degu MODERN SPECIES 61 ENSODEG00000010547 PLEKHH2 (ENSODEG00000012982) DYNC2LI1 (ENSODEG00000011054) ABCG5 (ENSODEG00000010535) ABCG8 (ENSODEG00000012555) LRPPRC (ENSODEG00000011211) ENSODEG00000019947 ENSODEG00000020039 ENSODEG00000011737 PPM1B (ENSODEG00000012106) SLC3A1 (ENSODEG00000011768) PREPL (ENSODEG00000012834) ENSODEG00000019894 ENSODEG00000019899 CAMKMT (ENSODEG00000013111) ENSODEG00000019927 #22 ENSODEG00000019924 SIX3 (ENSODEG00000011611) SIX2 (ENSODEG00000011970) ENSODEG00000012336 SRBD1 (ENSODEG00000012095) PRKCE (ENSODEG00000011779) EPAS1 (ENSODEG00000011675) RHOQ (ENSODEG00000012565) ENSODEG00000013963 ENSODEG00000011714 SOCS5 (ENSODEG00000019978) ENSODEG00000011724 TTC7A (ENSODEG00000011584) STPG4 (ENSODEG00000012221) CALM2 (ENSODEG00000013273) Degu MODERN SPECIES 64 NRN1 (ENSODEG00000006426) #7 FARS2 (ENSODEG00000006881) #8 ENSODEG00000019555 LYRM4 (ENSODEG00000005678) #9 ENSODEG00000006170 #11 CDYL (ENSODEG00000006073) #10 ENSODEG00000019345 ECI2 (ENSODEG00000007068) #14 FAM217A (ENSODEG00000006489) #16 PRPF4B (ENSODEG00000006156) #17 PXDC1 (ENSODEG00000006864) #19 SLC22A23 (ENSODEG00000007173) #20 PSMG4 (ENSODEG00000006109) #21 ENSODEG00000006987 #22 ENSODEG00000006037 TUBB2A (ENSODEG00000006689) #22 BPHL (ENSODEG00000008397) #23 RIPK1 (ENSODEG00000007668) #24 NQO2 (ENSODEG00000006400) #25 SERPINB6 (ENSODEG00000008291) ##26 ENSODEG00000006244 #27 ENSODEG00000006648 ENSODEG00000006906 #27 SERPINB1 (ENSODEG00000010241) #28 WRNIP1 (ENSODEG00000006805) #29 MYLK4 (ENSODEG00000006897) #30 GMDS (ENSODEG00000009960) #31 ENSODEG00000007557 FOXC1 (ENSODEG00000006912) FOXF2 (ENSODEG00000007607) EXOC2 (ENSODEG00000006797) Degu DUPLICATION Degu MODERN SPECIES 64 LY86 (ENSODEG00000005843) F13A1 (ENSODEG00000006301) NRN1 (ENSODEG00000006426) #7 FARS2 (ENSODEG00000006881) #8 ENSODEG00000019555 LYRM4 (ENSODEG00000005678) #9 ENSODEG00000006170 #11 CDYL (ENSODEG00000006073) #10 ENSODEG00000019345 ECI2 (ENSODEG00000007068) #14 FAM217A (ENSODEG00000006489) #16 PRPF4B (ENSODEG00000006156) #17 PXDC1 (ENSODEG00000006864) #19 SLC22A23 (ENSODEG00000007173) #20 PSMG4 (ENSODEG00000006109) #21 ENSODEG00000006987 #22 ENSODEG00000006037 TUBB2A (ENSODEG00000006689) #22 BPHL (ENSODEG00000008397) #23 RIPK1 (ENSODEG00000007668) #24 NQO2 (ENSODEG00000006400) #25 SERPINB6 (ENSODEG00000008291) ##26 ENSODEG00000006244 #27 ENSODEG00000006648 ENSODEG00000006906 #27 SERPINB1 (ENSODEG00000010241) #28 WRNIP1 (ENSODEG00000006805) #29 MYLK4 (ENSODEG00000006897) #30 GMDS (ENSODEG00000009960) #31 ENSODEG00000007557 FOXC1 (ENSODEG00000006912) Degu MODERN SPECIES 62 HSCB (ENSODEG00000017352) XBP1 (ENSODEG00000017362) ZNRF3 (ENSODEG00000017168) KREMEN1 (ENSODEG00000017265) ENSODEG00000020526 EMID1 (ENSODEG00000017465) ENSODEG00000017244 RHBDD3 (ENSODEG00000017373) ENSODEG00000017496 GAS2L1 (ENSODEG00000017194) RASL10A (ENSODEG00000017393) AP1B1 (ENSODEG00000017338) NEFH (ENSODEG00000017433) ENSODEG00000017650 NIPSNAP1 (ENSODEG00000017189) ENSODEG00000017494 #22 NF2 (ENSODEG00000017517) CABP7 (ENSODEG00000017415) ZMAT5 (ENSODEG00000017389) ENSODEG00000017651 ASCC2 (ENSODEG00000017546) ENSODEG00000017520 ENSODEG00000017459 KIF21A (ENSODEG00000017431) ENSODEG00000017452 CPNE8 (ENSODEG00000017711) ENSODEG00000020455 ENSODEG00000017594 SYT10 (ENSODEG00000017446) Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 172 LY86 (ENSCLAG00000002671) F13A1 (ENSCLAG00000003000) NRN1 (ENSCLAG00000011260) #7 FARS2 (ENSCLAG00000017316) #8 ENSCLAG00000011017 PPP1R3G (ENSCLAG00000012673) RPP40 (ENSCLAG00000003235) #11 CDYL (ENSCLAG00000003356) #10 ECI2 (ENSCLAG00000003560) #14 ENSCLAG00000003863 #15 FAM217A (ENSCLAG00000004051) #16 PRPF4B (ENSCLAG00000004201) #17 PXDC1 (ENSCLAG00000002715) #19 SLC22A23 (ENSCLAG00000002845) #20 PSMG4 (ENSCLAG00000003148) #21 TUBB2B (ENSCLAG00000003177) #22 BPHL (ENSCLAG00000003241) #23 ENSCLAG00000003326 #22 RIPK1 (ENSCLAG00000002300) #24 NQO2 (ENSCLAG00000002417) #25 SERPINB6 (ENSCLAG00000002474) ##26 ENSCLAG00000002657 #27 ENSCLAG00000002501 #27 ENSCLAG00000007069 #27 ENSCLAG00000007653 #27 SERPINB1 (ENSCLAG00000008637) #28 WRNIP1 (ENSCLAG00000006960) #29 MYLK4 (ENSCLAG00000007226) #30 GMDS (ENSCLAG00000002602) #31 FOXF2 (ENSCLAG00000002746) EXOC2 (ENSCLAG00000003072) Long-tailed chinchilla MODERN SPECIES 172 NRN1 (ENSCLAG00000011260) #7 FARS2 (ENSCLAG00000017316) #8 ENSCLAG00000011017 PPP1R3G (ENSCLAG00000012673) RPP40 (ENSCLAG00000003235) #11 CDYL (ENSCLAG00000003356) #10 ECI2 (ENSCLAG00000003560) #14 ENSCLAG00000003863 #15 FAM217A (ENSCLAG00000004051) #16 PRPF4B (ENSCLAG00000004201) #17 PXDC1 (ENSCLAG00000002715) #19 SLC22A23 (ENSCLAG00000002845) #20 PSMG4 (ENSCLAG00000003148) #21 TUBB2B (ENSCLAG00000003177) #22 BPHL (ENSCLAG00000003241) #23 ENSCLAG00000003326 #22 RIPK1 (ENSCLAG00000002300) #24 NQO2 (ENSCLAG00000002417) #25 SERPINB6 (ENSCLAG00000002474) ##26 ENSCLAG00000002657 #27 ENSCLAG00000002501 #27 ENSCLAG00000007069 #27 ENSCLAG00000007653 #27 SERPINB1 (ENSCLAG00000008637) #28 WRNIP1 (ENSCLAG00000006960) #29 MYLK4 (ENSCLAG00000007226) #30 GMDS (ENSCLAG00000002602) #31 FOXF2 (ENSCLAG00000002746) EXOC2 (ENSCLAG00000003072) IRF4 (ENSCLAG00000004136) DUSP22 (ENSCLAG00000004363) Rodentia_B ANCESTRAL SPECIES 8 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Myomorpha ANCESTRAL SPECIES 11 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Lesser Egyptian jerboa MODERN SPECIES 129 Ly86 (ENSJJAG00000022504) F13a1 (ENSJJAG00000000070) Nrn1 (ENSJJAG00000000725) #7 Fars2 (ENSJJAG00000002799) #8 Lyrm4 (ENSJJAG00000004657) #9 Rpp40 (ENSJJAG00000020629) #11 Cdyl (ENSJJAG00000000586) #10 ENSJJAG00000001626 ENSJJAG00000004231 #14 Tex56 (ENSJJAG00000008898) #15 ENSJJAG00000010338 #16 Prpf4b (ENSJJAG00000011217) #17 Pxdc1 (ENSJJAG00000012785) #19 Slc22a23 (ENSJJAG00000005711) #20 Psmg4 (ENSJJAG00000011408) #21 Tubb2b (ENSJJAG00000011739) #22 Bphl (ENSJJAG00000012949) #23 Ripk1 (ENSJJAG00000013771) #24 Nqo2 (ENSJJAG00000015012) #25 ENSJJAG00000015735 ##26 ENSJJAG00000017382 #27 ENSJJAG00000010900 #28 Wrnip1 (ENSJJAG00000011299) #29 ENSJJAG00000013456 #30 Gmds (ENSJJAG00000015490) #31 ENSJJAG00000015833 Foxf2 (ENSJJAG00000017530) ENSJJAG00000017878 Irf4 (ENSJJAG00000019182) Dusp22 (ENSJJAG00000019867) Muroidea ANCESTRAL SPECIES 15 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 764 Rreb1 (ENSNGAG00000021506) Ly86 (ENSNGAG00000011116) F13a1 (ENSNGAG00000022897) Nrn1 (ENSNGAG00000018954) #7 Fars2 (ENSNGAG00000021589) #8 Lyrm4 (ENSNGAG00000024207) #9 ENSNGAG00000023955 #11 Cdyl (ENSNGAG00000023764) #10 ENSNGAG00000020575 #14 Prpf4b (ENSNGAG00000023322) #17 ENSNGAG00000009942 Fam50b (ENSNGAG00000024017) #18 Pxdc1 (ENSNGAG00000004640) #19 Slc22a23 (ENSNGAG00000021185) #20 Psmg4 (ENSNGAG00000016957) #21 Tubb2b (ENSNGAG00000021437) #22 Tubb2a (ENSNGAG00000020746) #22 Bphl (ENSNGAG00000024371) #23 Ripk1 (ENSNGAG00000010576) #24 Upper Galilee mountains blind mole rat MODERN SPECIES 764 Ly86 (ENSNGAG00000011116) F13a1 (ENSNGAG00000022897) Nrn1 (ENSNGAG00000018954) #7 Fars2 (ENSNGAG00000021589) #8 Lyrm4 (ENSNGAG00000024207) #9 ENSNGAG00000023955 #11 Cdyl (ENSNGAG00000023764) #10 ENSNGAG00000020575 #14 Prpf4b (ENSNGAG00000023322) #17 ENSNGAG00000009942 Fam50b (ENSNGAG00000024017) #18 Pxdc1 (ENSNGAG00000004640) #19 Slc22a23 (ENSNGAG00000021185) #20 Psmg4 (ENSNGAG00000016957) #21 Tubb2b (ENSNGAG00000021437) #22 Tubb2a (ENSNGAG00000020746) #22 Bphl (ENSNGAG00000024371) #23 Ripk1 (ENSNGAG00000010576) #24 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q #14 ENSGT00940000155105.r #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154519.g.b.a ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Murinae ANCESTRAL SPECIES 21 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q #14 ENSGT00940000155105.r #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.o.a.b #27 ENSGT00940000154931.d.o.a.a #27 ENSGT00940000154519.g.b.a.b ##26 ENSGT00940000154573.l #28 ENSGT00940000154573.k.a #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b Rat DUPLICATION Rat MODERN SPECIES 8 Fars2 (ENSRNOG00000016135) #8 Lyrm4 (ENSRNOG00000047970) #9 Ppp1r3g (ENSRNOG00000016222) Rpp40 (ENSRNOG00000016226) #11 Cdyl (ENSRNOG00000032215) #10 Eci2 (ENSRNOG00000066714) #14 Eci3 (ENSRNOG00000029549) #14 Tex56p (ENSRNOG00000033763) #15 Fam217a (ENSRNOG00000016672) #16 Prpf4b (ENSRNOG00000016705) #17 Fam50b (ENSRNOG00000017083) #18 Pxdc1 (ENSRNOG00000017093) #19 Slc22a23 (ENSRNOG00000017210) #20 Psmg4 (ENSRNOG00000039265) #21 Tubb2a (ENSRNOG00000017558) #22 Tubb2b (ENSRNOG00000017445) #22 Bphl (ENSRNOG00000017577) #23 Ripk1 (ENSRNOG00000017787) #24 Serpinb6a (ENSRNOG00000017962) ##26 Nqo2 (ENSRNOG00000017820) #25 RGD1564786 (ENSRNOG00000063990) ##26 Serpinb6e (ENSRNOG00000070025) ##26 Serpinb9d (ENSRNOG00000022139) #27 Serpinb1b (ENSRNOG00000034229) #28 RGD1562844 (ENSRNOG00000048576) #27 Serpinb9 (ENSRNOG00000033772) #27 Serpinb6b (ENSRNOG00000016420) ##26 Serpinb1a (ENSRNOG00000016581) #28 Wrnip1 (ENSRNOG00000017040) #29 ENSRNOG00000063699 Mylk4 (ENSRNOG00000070083) #30 Rat MODERN SPECIES 8 Nrn1 (ENSRNOG00000050767) #7 Fars2 (ENSRNOG00000016135) #8 Lyrm4 (ENSRNOG00000047970) #9 Ppp1r3g (ENSRNOG00000016222) Rpp40 (ENSRNOG00000016226) #11 Cdyl (ENSRNOG00000032215) #10 Eci2 (ENSRNOG00000066714) #14 Eci3 (ENSRNOG00000029549) #14 Tex56p (ENSRNOG00000033763) #15 Fam217a (ENSRNOG00000016672) #16 Prpf4b (ENSRNOG00000016705) #17 Fam50b (ENSRNOG00000017083) #18 Pxdc1 (ENSRNOG00000017093) #19 Slc22a23 (ENSRNOG00000017210) #20 Psmg4 (ENSRNOG00000039265) #21 Tubb2a (ENSRNOG00000017558) #22 Tubb2b (ENSRNOG00000017445) #22 Bphl (ENSRNOG00000017577) #23 Ripk1 (ENSRNOG00000017787) #24 Serpinb6a (ENSRNOG00000017962) ##26 Nqo2 (ENSRNOG00000017820) #25 RGD1564786 (ENSRNOG00000063990) ##26 Serpinb6e (ENSRNOG00000070025) ##26 Serpinb9d (ENSRNOG00000022139) #27 Serpinb1b (ENSRNOG00000034229) #28 RGD1562844 (ENSRNOG00000048576) #27 Serpinb9 (ENSRNOG00000033772) #27 Serpinb6b (ENSRNOG00000016420) ##26 Serpinb1a (ENSRNOG00000016581) #28 Wrnip1 (ENSRNOG00000017040) #29 ENSRNOG00000063699 Mus ANCESTRAL SPECIES 18 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q.a #14 ENSGT00940000155105.q.b #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154519.g.b.a.a.a.a ##26 ENSGT00940000154519.g.b.a.a.b.a ##26 ENSGT00940000154519.g.b.a.a.a.b.a ##26 ENSGT00940000154931.d.o.b #27 ENSGT00940000154931.d.p #27 ENSGT00940000154931.d.o.a.a #27 ENSGT00940000154519.g.b.a.b ##26 ENSGT00940000154931.d.o.a.b #27 ENSGT00940000154573.k.b #28 ENSGT00940000154573.k.a #28 ENSGT01000000215059 Mus_A ANCESTRAL SPECIES 14 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q.a #14 ENSGT00940000155105.q.b #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154519.g.b.a.a.a.a ##26 ENSGT00940000154519.g.a ##26 ENSGT00940000154931.d.o.a.a #27 ENSGT00940000154519.g.b.a.b ##26 ENSGT00940000154573.l #28 ENSGT00940000154931.d.o.a.b #27 ENSGT00940000154573.k.b #28 ENSGT00940000154573.k.a #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 Ryukyu mouse MODERN SPECIES 4 Nrn1 (MGP_CAROLIEiJ_G0018433) #7 Fars2 (MGP_CAROLIEiJ_G0018432) #8 Lyrm4 (MGP_CAROLIEiJ_G0018431) #9 Ppp1r3g (MGP_CAROLIEiJ_G0018430) Rpp40 (MGP_CAROLIEiJ_G0018429) #11 Cdyl (MGP_CAROLIEiJ_G0018428) #10 Eci2 (MGP_CAROLIEiJ_G0018427) #14 Eci3 (MGP_CAROLIEiJ_G0018426) #14 Tex56 (MGP_CAROLIEiJ_G0018425) #15 MGP_CAROLIEiJ_G0018424 #16 Prpf4b (MGP_CAROLIEiJ_G0018423) #17 Fam50b (MGP_CAROLIEiJ_G0018422) #18 Pxdc1 (MGP_CAROLIEiJ_G0018421) #19 Slc22a23 (MGP_CAROLIEiJ_G0018420) #20 Psmg4 (MGP_CAROLIEiJ_G0018419) #21 MGP_CAROLIEiJ_G0018418 #22 Bphl (MGP_CAROLIEiJ_G0018417) #23 Ripk1 (MGP_CAROLIEiJ_G0018416) #24 Nqo2 (MGP_CAROLIEiJ_G0018415) #25 Serpinb6a (MGP_CAROLIEiJ_G0018414) ##26 Serpinb6c (MGP_CAROLIEiJ_G0018413) ##26 MGP_CAROLIEiJ_G0018412 ##26 MGP_CAROLIEiJ_G0018411 #27 MGP_CAROLIEiJ_G0018410 #27 MGP_CAROLIEiJ_G0018409 #27 Serpinb9 (MGP_CAROLIEiJ_G0018408) #27 Serpinb6b (MGP_CAROLIEiJ_G0018407) ##26 MGP_CAROLIEiJ_G0018406 #28 Serpinb1a (MGP_CAROLIEiJ_G0018405) #28 MGP_CAROLIEiJ_G0018404 Wrnip1 (MGP_CAROLIEiJ_G0018403) #29 Mus_B ANCESTRAL SPECIES 13 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q.a #14 ENSGT00940000155105.q.b #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154519.g.b.a.a.a.a ##26 ENSGT00940000154519.g.b.a.a.b.a ##26 ENSGT00940000154519.g.b.a.a.a.b.a ##26 ENSGT00940000154931.d.o.b.a.a #27 ENSGT00940000154931.d.o.b.b #27 ENSGT00940000154931.d.p #27 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.o.a.b #27 ENSGT00940000154931.d.o.a.a #27 ENSGT00940000154519.g.b.a.b ##26 ENSGT00940000154573.l #28 Mouse DUPLICATION Mouse MODERN SPECIES 4 Nrn1 (ENSMUSG00000039114) #7 Fars2 (ENSMUSG00000021420) #8 Lyrm4 (ENSMUSG00000046573) #9 Ppp1r3g (ENSMUSG00000050423) Rpp40 (ENSMUSG00000021418) #11 Cdyl (ENSMUSG00000059288) #10 Eci2 (ENSMUSG00000021417) #14 Eci3 (ENSMUSG00000021416) #14 Tex56 (ENSMUSG00000021415) #15 Fam217a (ENSMUSG00000021414) #16 Prpf4b (ENSMUSG00000021413) #17 Fam50b (ENSMUSG00000038246) #18 Pxdc1 (ENSMUSG00000021411) #19 Slc22a23 (ENSMUSG00000038267) #20 Psmg4 (ENSMUSG00000071451) #21 Tubb2b (ENSMUSG00000045136) #22 Tubb2a (ENSMUSG00000058672) #22 Bphl (ENSMUSG00000038286) #23 Ripk1 (ENSMUSG00000021408) #24 Nqo2 (ENSMUSG00000046949) #25 Serpinb6a (ENSMUSG00000060147) ##26 Serpinb6c (ENSMUSG00000052180) ##26 Serpinb6e (ENSMUSG00000069248) ##26 Serpinb6d (ENSMUSG00000047889) ##26 Serpinb9g (ENSMUSG00000057726) #27 Serpinb9h (ENSMUSG00000071452) #27 Serpinb9f (ENSMUSG00000038327) #27 Serpinb9e (ENSMUSG00000062342) #27 Serpinb9d (ENSMUSG00000054266) #27 Serpinb9c (ENSMUSG00000021404) #27 Serpinb1b (ENSMUSG00000051029) #28 Mouse MODERN SPECIES 4 Fars2 (ENSMUSG00000021420) #8 Lyrm4 (ENSMUSG00000046573) #9 Ppp1r3g (ENSMUSG00000050423) Rpp40 (ENSMUSG00000021418) #11 Cdyl (ENSMUSG00000059288) #10 Eci2 (ENSMUSG00000021417) #14 Eci3 (ENSMUSG00000021416) #14 Tex56 (ENSMUSG00000021415) #15 Fam217a (ENSMUSG00000021414) #16 Prpf4b (ENSMUSG00000021413) #17 Fam50b (ENSMUSG00000038246) #18 Pxdc1 (ENSMUSG00000021411) #19 Slc22a23 (ENSMUSG00000038267) #20 Psmg4 (ENSMUSG00000071451) #21 Tubb2b (ENSMUSG00000045136) #22 Tubb2a (ENSMUSG00000058672) #22 Bphl (ENSMUSG00000038286) #23 Ripk1 (ENSMUSG00000021408) #24 Nqo2 (ENSMUSG00000046949) #25 Serpinb6a (ENSMUSG00000060147) ##26 Serpinb6c (ENSMUSG00000052180) ##26 Serpinb6e (ENSMUSG00000069248) ##26 Serpinb6d (ENSMUSG00000047889) ##26 Serpinb9g (ENSMUSG00000057726) #27 Serpinb9h (ENSMUSG00000071452) #27 Serpinb9f (ENSMUSG00000038327) #27 Serpinb9e (ENSMUSG00000062342) #27 Serpinb9d (ENSMUSG00000054266) #27 Serpinb9c (ENSMUSG00000021404) #27 Serpinb1b (ENSMUSG00000051029) #28 Serpinb9b (ENSMUSG00000021403) #27 Mus_C ANCESTRAL SPECIES 10 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q.a #14 ENSGT00940000155105.q.b #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.b ##26 ENSGT00940000154519.g.b.a.a.a.a ##26 ENSGT00940000154519.g.b.a.a.b.a ##26 ENSGT00940000154519.g.b.a.a.a.b.a ##26 ENSGT00940000154931.d.o.b.a.a #27 ENSGT00940000154931.d.o.b.a.b #27 ENSGT00940000154931.d.o.b.b #27 ENSGT00940000154931.d.p #27 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.o.a.b #27 ENSGT00940000154931.d.o.a.a #27 ENSGT00940000154519.g.b.a.b ##26 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 2870 Btbd3 (ENSMSIG00000003269) ENSMSIG00000003305 #22 ENSMSIG00000003421 Steppe mouse MODERN SPECIES 2975 ENSMSIG00000002713 #14 Tex56 (ENSMSIG00000002912) #15 Fam217a (ENSMSIG00000002942) #16 Prpf4b (ENSMSIG00000003035) #17 ENSMSIG00000003077 Fam50b (ENSMSIG00000003082) #18 Pxdc1 (ENSMSIG00000003089) #19 Slc22a23 (ENSMSIG00000003104) #20 Psmg4 (ENSMSIG00000003186) #21 Tubb2a (ENSMSIG00000003218) #22 Bphl (ENSMSIG00000003262) #23 Ripk1 (ENSMSIG00000003307) #24 Nqo2 (ENSMSIG00000003346) #25 Serpinb6a (ENSMSIG00000003400) ##26 Serpinb6c (ENSMSIG00000003508) ##26 Serpinb6e (ENSMSIG00000003547) ##26 Serpinb6d (ENSMSIG00000003590) ##26 spretus DUPLICATION spretus DUPLICATION spretus MODERN SPECIES 4 MGP_SPRETEiJ_G0019307 MGP_SPRETEiJ_G0019306 MGP_SPRETEiJ_G0019305 MGP_SPRETEiJ_G0019304 MGP_SPRETEiJ_G0019303 #14 MGP_SPRETEiJ_G0019302 #14 Tex56 (MGP_SPRETEiJ_G0019301) #15 MGP_SPRETEiJ_G0019300 #16 Prpf4b (MGP_SPRETEiJ_G0019299) #17 Fam50b (MGP_SPRETEiJ_G0019298) #18 Pxdc1 (MGP_SPRETEiJ_G0019297) #19 Slc22a23 (MGP_SPRETEiJ_G0019296) #20 Psmg4 (MGP_SPRETEiJ_G0019295) #21 MGP_SPRETEiJ_G0019294 #22 MGP_SPRETEiJ_G0019293 #22 MGP_SPRETEiJ_G0019292 #22 Bphl (MGP_SPRETEiJ_G0019291) #23 Ripk1 (MGP_SPRETEiJ_G0019290) #24 Nqo2 (MGP_SPRETEiJ_G0019289) #25 Serpinb6a (MGP_SPRETEiJ_G0019288) ##26 Serpinb6c (MGP_SPRETEiJ_G0019287) ##26 MGP_SPRETEiJ_G0019286 ##26 Serpinb6d (MGP_SPRETEiJ_G0019285) ##26 MGP_SPRETEiJ_G0019284 #27 MGP_SPRETEiJ_G0019283 #27 MGP_SPRETEiJ_G0019282 #27 MGP_SPRETEiJ_G0019281 #27 MGP_SPRETEiJ_G0019280 #27 Serpinb9c (MGP_SPRETEiJ_G0019279) #27 MGP_SPRETEiJ_G0019278 #27 Serpinb9 (MGP_SPRETEiJ_G0019277) #27 spretus MODERN SPECIES 4 Cdyl (MGP_SPRETEiJ_G0019308) #10 MGP_SPRETEiJ_G0019307 MGP_SPRETEiJ_G0019306 MGP_SPRETEiJ_G0019305 MGP_SPRETEiJ_G0019304 MGP_SPRETEiJ_G0019303 #14 MGP_SPRETEiJ_G0019302 #14 Tex56 (MGP_SPRETEiJ_G0019301) #15 MGP_SPRETEiJ_G0019300 #16 Prpf4b (MGP_SPRETEiJ_G0019299) #17 Fam50b (MGP_SPRETEiJ_G0019298) #18 Pxdc1 (MGP_SPRETEiJ_G0019297) #19 Slc22a23 (MGP_SPRETEiJ_G0019296) #20 Psmg4 (MGP_SPRETEiJ_G0019295) #21 MGP_SPRETEiJ_G0019294 #22 MGP_SPRETEiJ_G0019293 #22 MGP_SPRETEiJ_G0019292 #22 Bphl (MGP_SPRETEiJ_G0019291) #23 Ripk1 (MGP_SPRETEiJ_G0019290) #24 Nqo2 (MGP_SPRETEiJ_G0019289) #25 Serpinb6a (MGP_SPRETEiJ_G0019288) ##26 Serpinb6c (MGP_SPRETEiJ_G0019287) ##26 MGP_SPRETEiJ_G0019286 ##26 Serpinb6d (MGP_SPRETEiJ_G0019285) ##26 MGP_SPRETEiJ_G0019284 #27 MGP_SPRETEiJ_G0019283 #27 MGP_SPRETEiJ_G0019282 #27 MGP_SPRETEiJ_G0019281 #27 MGP_SPRETEiJ_G0019280 #27 Serpinb9c (MGP_SPRETEiJ_G0019279) #27 MGP_SPRETEiJ_G0019278 #27 spretus MODERN SPECIES 4 Rpp40 (MGP_SPRETEiJ_G0019309) #11 Cdyl (MGP_SPRETEiJ_G0019308) #10 MGP_SPRETEiJ_G0019307 MGP_SPRETEiJ_G0019306 MGP_SPRETEiJ_G0019305 MGP_SPRETEiJ_G0019304 MGP_SPRETEiJ_G0019303 #14 MGP_SPRETEiJ_G0019302 #14 Tex56 (MGP_SPRETEiJ_G0019301) #15 MGP_SPRETEiJ_G0019300 #16 Prpf4b (MGP_SPRETEiJ_G0019299) #17 Fam50b (MGP_SPRETEiJ_G0019298) #18 Pxdc1 (MGP_SPRETEiJ_G0019297) #19 Slc22a23 (MGP_SPRETEiJ_G0019296) #20 Psmg4 (MGP_SPRETEiJ_G0019295) #21 MGP_SPRETEiJ_G0019294 #22 MGP_SPRETEiJ_G0019293 #22 MGP_SPRETEiJ_G0019292 #22 Bphl (MGP_SPRETEiJ_G0019291) #23 Ripk1 (MGP_SPRETEiJ_G0019290) #24 Nqo2 (MGP_SPRETEiJ_G0019289) #25 Serpinb6a (MGP_SPRETEiJ_G0019288) ##26 Serpinb6c (MGP_SPRETEiJ_G0019287) ##26 MGP_SPRETEiJ_G0019286 ##26 Serpinb6d (MGP_SPRETEiJ_G0019285) ##26 MGP_SPRETEiJ_G0019284 #27 MGP_SPRETEiJ_G0019283 #27 MGP_SPRETEiJ_G0019282 #27 MGP_SPRETEiJ_G0019281 #27 MGP_SPRETEiJ_G0019280 #27 Serpinb9c (MGP_SPRETEiJ_G0019279) #27 Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 7 Fars2 (MGP_PahariEiJ_G0019500) #8 Lyrm4 (MGP_PahariEiJ_G0019499) #9 Ppp1r3g (MGP_PahariEiJ_G0019498) Rpp40 (MGP_PahariEiJ_G0019497) #11 Cdyl (MGP_PahariEiJ_G0019496) #10 Eci2 (MGP_PahariEiJ_G0019495) #14 Eci3 (MGP_PahariEiJ_G0019494) #14 Tex56 (MGP_PahariEiJ_G0019493) #15 MGP_PahariEiJ_G0019492 #16 Prpf4b (MGP_PahariEiJ_G0019491) #17 Fam50b (MGP_PahariEiJ_G0019490) #18 Pxdc1 (MGP_PahariEiJ_G0019489) #19 Slc22a23 (MGP_PahariEiJ_G0019488) #20 Psmg4 (MGP_PahariEiJ_G0019487) #21 Tubb2b (MGP_PahariEiJ_G0019486) #22 MGP_PahariEiJ_G0019485 #22 Bphl (MGP_PahariEiJ_G0019484) #23 Ripk1 (MGP_PahariEiJ_G0019483) #24 Nqo2 (MGP_PahariEiJ_G0019482) #25 Serpinb6a (MGP_PahariEiJ_G0019481) ##26 Serpinb6c (MGP_PahariEiJ_G0019480) ##26 Serpinb6e (MGP_PahariEiJ_G0019479) ##26 Serpinb6d (MGP_PahariEiJ_G0019478) ##26 MGP_PahariEiJ_G0019477 #27 MGP_PahariEiJ_G0019476 #27 MGP_PahariEiJ_G0019475 #27 MGP_PahariEiJ_G0019474 #27 Serpinb9c (MGP_PahariEiJ_G0019473) #27 Serpinb9 (MGP_PahariEiJ_G0019472) #27 Serpinb6b (MGP_PahariEiJ_G0019471) ##26 MGP_PahariEiJ_G0019470 #28 Shrew mouse MODERN SPECIES 7 Nrn1 (MGP_PahariEiJ_G0019501) #7 Fars2 (MGP_PahariEiJ_G0019500) #8 Lyrm4 (MGP_PahariEiJ_G0019499) #9 Ppp1r3g (MGP_PahariEiJ_G0019498) Rpp40 (MGP_PahariEiJ_G0019497) #11 Cdyl (MGP_PahariEiJ_G0019496) #10 Eci2 (MGP_PahariEiJ_G0019495) #14 Eci3 (MGP_PahariEiJ_G0019494) #14 Tex56 (MGP_PahariEiJ_G0019493) #15 MGP_PahariEiJ_G0019492 #16 Prpf4b (MGP_PahariEiJ_G0019491) #17 Fam50b (MGP_PahariEiJ_G0019490) #18 Pxdc1 (MGP_PahariEiJ_G0019489) #19 Slc22a23 (MGP_PahariEiJ_G0019488) #20 Psmg4 (MGP_PahariEiJ_G0019487) #21 Tubb2b (MGP_PahariEiJ_G0019486) #22 MGP_PahariEiJ_G0019485 #22 Bphl (MGP_PahariEiJ_G0019484) #23 Ripk1 (MGP_PahariEiJ_G0019483) #24 Nqo2 (MGP_PahariEiJ_G0019482) #25 Serpinb6a (MGP_PahariEiJ_G0019481) ##26 Serpinb6c (MGP_PahariEiJ_G0019480) ##26 Serpinb6e (MGP_PahariEiJ_G0019479) ##26 Serpinb6d (MGP_PahariEiJ_G0019478) ##26 MGP_PahariEiJ_G0019477 #27 MGP_PahariEiJ_G0019476 #27 MGP_PahariEiJ_G0019475 #27 MGP_PahariEiJ_G0019474 #27 Serpinb9c (MGP_PahariEiJ_G0019473) #27 Serpinb9 (MGP_PahariEiJ_G0019472) #27 Serpinb6b (MGP_PahariEiJ_G0019471) ##26 Cricetidae ANCESTRAL SPECIES 22 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.a.c.a ##26 ENSGT00940000154519.g.b.a.d ##26 ENSGT00940000154519.g.b.a.c.b ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Cricetinae ANCESTRAL SPECIES 20 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.a.c.a ##26 ENSGT00940000154931.d.i #27 ENSGT00940000154519.g.b.a.c.b ##26 ENSGT00940000154931.d.j #27 ENSGT00940000154573 #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 623 Fars2 (ENSMAUG00000008493) #8 Lyrm4 (ENSMAUG00000009051) #9 Rpp40 (ENSMAUG00000010268) #11 Cdyl (ENSMAUG00000011510) #10 ENSMAUG00000020164 #14 ENSMAUG00000001515 #14 Tex56 (ENSMAUG00000002707) #15 Fam217a (ENSMAUG00000004346) #16 Prpf4b (ENSMAUG00000007805) #17 ENSMAUG00000015060 Fam50b (ENSMAUG00000001407) #18 Pxdc1 (ENSMAUG00000016900) #19 Slc22a23 (ENSMAUG00000017453) #20 Psmg4 (ENSMAUG00000017755) #21 ENSMAUG00000018054 #22 Tubb2a (ENSMAUG00000018540) #22 Bphl (ENSMAUG00000000408) #23 Ripk1 (ENSMAUG00000000557) #24 Nqo2 (ENSMAUG00000000875) #25 ENSMAUG00000001093 ##26 ENSMAUG00000001439 #27 ENSMAUG00000008075 #27 ENSMAUG00000009098 ##26 ENSMAUG00000009345 #27 ENSMAUG00000009659 #28 Wrnip1 (ENSMAUG00000009914) #29 Mylk4 (ENSMAUG00000011053) #30 Gmds (ENSMAUG00000011976) #31 Foxc1 (ENSMAUG00000018460) Foxf2 (ENSMAUG00000012470) Foxq1 (ENSMAUG00000018519) Golden Hamster MODERN SPECIES 623 Nrn1 (ENSMAUG00000008121) #7 Fars2 (ENSMAUG00000008493) #8 Lyrm4 (ENSMAUG00000009051) #9 Rpp40 (ENSMAUG00000010268) #11 Cdyl (ENSMAUG00000011510) #10 ENSMAUG00000020164 #14 ENSMAUG00000001515 #14 Tex56 (ENSMAUG00000002707) #15 Fam217a (ENSMAUG00000004346) #16 Prpf4b (ENSMAUG00000007805) #17 ENSMAUG00000015060 Fam50b (ENSMAUG00000001407) #18 Pxdc1 (ENSMAUG00000016900) #19 Slc22a23 (ENSMAUG00000017453) #20 Psmg4 (ENSMAUG00000017755) #21 ENSMAUG00000018054 #22 Tubb2a (ENSMAUG00000018540) #22 Bphl (ENSMAUG00000000408) #23 Ripk1 (ENSMAUG00000000557) #24 Nqo2 (ENSMAUG00000000875) #25 ENSMAUG00000001093 ##26 ENSMAUG00000001439 #27 ENSMAUG00000008075 #27 ENSMAUG00000009098 ##26 ENSMAUG00000009345 #27 ENSMAUG00000009659 #28 Wrnip1 (ENSMAUG00000009914) #29 Mylk4 (ENSMAUG00000011053) #30 Gmds (ENSMAUG00000011976) #31 Foxc1 (ENSMAUG00000018460) Foxf2 (ENSMAUG00000012470) Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 317 Nrn1 (ENSCGRG00001017665) #7 ENSCGRG00001012890 Fars2 (ENSCGRG00001022626) #8 Lyrm4 (ENSCGRG00001020406) #9 Ppp1r3g (ENSCGRG00001001814) Rpp40 (ENSCGRG00001018328) #11 ENSCGRG00001013878 Cdyl (ENSCGRG00001002703) #10 ENSCGRG00001021795 #14 Fam217a (ENSCGRG00001020164) #16 Prpf4b (ENSCGRG00001019388) #17 Fam50b (ENSCGRG00001009274) #18 Pxdc1 (ENSCGRG00001021838) #19 Slc22a23 (ENSCGRG00001010789) #20 Psmg4 (ENSCGRG00001017753) #21 Tubb2b (ENSCGRG00001008382) #22 Tubb2a (ENSCGRG00001020515) #22 Bphl (ENSCGRG00001014124) #23 Ripk1 (ENSCGRG00001014419) #24 Nqo2 (ENSCGRG00001004425) #25 ENSCGRG00001015437 ##26 ENSCGRG00001020665 ##26 ENSCGRG00001022043 #27 ENSCGRG00001021359 ENSCGRG00001014514 #27 ENSCGRG00001009851 ENSCGRG00001000139 #28 ENSCGRG00001007544 Wrnip1 (ENSCGRG00001020075) #29 Mylk4 (ENSCGRG00001012998) #30 ENSCGRG00001020761 Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001012890 Fars2 (ENSCGRG00001022626) #8 Lyrm4 (ENSCGRG00001020406) #9 Ppp1r3g (ENSCGRG00001001814) Rpp40 (ENSCGRG00001018328) #11 ENSCGRG00001013878 Cdyl (ENSCGRG00001002703) #10 ENSCGRG00001021795 #14 Fam217a (ENSCGRG00001020164) #16 Prpf4b (ENSCGRG00001019388) #17 Fam50b (ENSCGRG00001009274) #18 Pxdc1 (ENSCGRG00001021838) #19 Slc22a23 (ENSCGRG00001010789) #20 Psmg4 (ENSCGRG00001017753) #21 Tubb2b (ENSCGRG00001008382) #22 Tubb2a (ENSCGRG00001020515) #22 Bphl (ENSCGRG00001014124) #23 Ripk1 (ENSCGRG00001014419) #24 Nqo2 (ENSCGRG00001004425) #25 ENSCGRG00001015437 ##26 ENSCGRG00001020665 ##26 ENSCGRG00001022043 #27 ENSCGRG00001021359 ENSCGRG00001014514 #27 ENSCGRG00001009851 ENSCGRG00001000139 #28 ENSCGRG00001007544 Wrnip1 (ENSCGRG00001020075) #29 Mylk4 (ENSCGRG00001012998) #30 ENSCGRG00001020761 Gmds (ENSCGRG00001014163) #31 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105.q #14 ENSGT00940000155105.r #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b.a.c.a ##26 ENSGT00940000154519.g.b.a.d ##26 ENSGT00940000154931.d #27 ENSGT00940000154573 #28 ENSGT01000000215059 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Northern American deer mouse MODERN SPECIES 18 Fars2 (ENSPEMG00000017477) #8 Lyrm4 (ENSPEMG00000030913) #9 Ppp1r3g (ENSPEMG00000014441) Rpp40 (ENSPEMG00000020809) #11 Cdyl (ENSPEMG00000022690) #10 ENSPEMG00000021110 #14 ENSPEMG00000021161 #14 Tex56 (ENSPEMG00000020583) #15 Fam217a (ENSPEMG00000020354) #16 Prpf4b (ENSPEMG00000020358) #17 ENSPEMG00000031049 Fam50b (ENSPEMG00000024324) #18 Pxdc1 (ENSPEMG00000021893) #19 Slc22a23 (ENSPEMG00000020810) #20 Psmg4 (ENSPEMG00000020434) #21 Tubb2b (ENSPEMG00000008538) #22 ENSPEMG00000028800 Bphl (ENSPEMG00000020657) #23 Ripk1 (ENSPEMG00000014892) #24 Nqo2 (ENSPEMG00000022103) #25 ENSPEMG00000030940 ##26 ENSPEMG00000006842 ##26 ENSPEMG00000011189 #27 ENSPEMG00000029739 ##26 ENSPEMG00000025946 #27 ENSPEMG00000007216 #27 ENSPEMG00000007226 ##26 ENSPEMG00000024282 #27 ENSPEMG00000003771 #28 ENSPEMG00000030799 Wrnip1 (ENSPEMG00000000543) #29 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 3 Nrn1 (ENSMOCG00000015236) #7 Fars2 (ENSMOCG00000021203) #8 Lyrm4 (ENSMOCG00000015484) #9 Ppp1r3g (ENSMOCG00000005122) Rpp40 (ENSMOCG00000000305) #11 Cdyl (ENSMOCG00000012115) #10 ENSMOCG00000009658 #14 ENSMOCG00000006528 #14 Tex56 (ENSMOCG00000011556) #15 Fam217a (ENSMOCG00000021508) #16 Prpf4b (ENSMOCG00000022394) #17 Fam50b (ENSMOCG00000009994) #18 Pxdc1 (ENSMOCG00000020484) #19 Slc22a23 (ENSMOCG00000009539) #20 Psmg4 (ENSMOCG00000020506) #21 Tubb2b (ENSMOCG00000021829) #22 Tubb2a (ENSMOCG00000021775) #22 Bphl (ENSMOCG00000012434) #23 Ripk1 (ENSMOCG00000002677) #24 Nqo2 (ENSMOCG00000007454) #25 ENSMOCG00000000484 ##26 ENSMOCG00000016676 ##26 ENSMOCG00000019022 ENSMOCG00000011182 ##26 ENSMOCG00000004352 #27 ENSMOCG00000010614 #27 ENSMOCG00000016281 ##26 ENSMOCG00000000987 #27 ENSMOCG00000021377 #28 Wrnip1 (ENSMOCG00000002819) #29 ENSMOCG00000019965 Prairie vole MODERN SPECIES 3 Fars2 (ENSMOCG00000021203) #8 Lyrm4 (ENSMOCG00000015484) #9 Ppp1r3g (ENSMOCG00000005122) Rpp40 (ENSMOCG00000000305) #11 Cdyl (ENSMOCG00000012115) #10 ENSMOCG00000009658 #14 ENSMOCG00000006528 #14 Tex56 (ENSMOCG00000011556) #15 Fam217a (ENSMOCG00000021508) #16 Prpf4b (ENSMOCG00000022394) #17 Fam50b (ENSMOCG00000009994) #18 Pxdc1 (ENSMOCG00000020484) #19 Slc22a23 (ENSMOCG00000009539) #20 Psmg4 (ENSMOCG00000020506) #21 Tubb2b (ENSMOCG00000021829) #22 Tubb2a (ENSMOCG00000021775) #22 Bphl (ENSMOCG00000012434) #23 Ripk1 (ENSMOCG00000002677) #24 Nqo2 (ENSMOCG00000007454) #25 ENSMOCG00000000484 ##26 ENSMOCG00000016676 ##26 ENSMOCG00000019022 ENSMOCG00000011182 ##26 ENSMOCG00000004352 #27 ENSMOCG00000010614 #27 ENSMOCG00000016281 ##26 ENSMOCG00000000987 #27 ENSMOCG00000021377 #28 Wrnip1 (ENSMOCG00000002819) #29 ENSMOCG00000019965 Mylk4 (ENSMOCG00000014428) #30 Kangaroo rat DUPLICATION Kangaroo rat DUPLICATION Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 220 ENSDORG00000024731 #22 ENSDORG00000029362 #22 Kangaroo rat MODERN SPECIES 220 ENSDORG00000024731 #22 ENSDORG00000029362 #22 Kangaroo rat MODERN SPECIES 221 ENSDORG00000027765 #22 Kangaroo rat MODERN SPECIES 351 Nqo2 (ENSDORG00000010390) #25 Ripk1 (ENSDORG00000010392) #24 ENSDORG00000029944 #11 ENSDORG00000011196 #11 ENSDORG00000028660 Cdyl (ENSDORG00000002812) #10 ENSDORG00000023689 ENSDORG00000004072 #14 Tex56 (ENSDORG00000024679) #15 ENSDORG00000025392 ENSDORG00000025074 #16 Prpf4b (ENSDORG00000000464) #17 Pxdc1 (ENSDORG00000029672) #19 Slc22a23 (ENSDORG00000010217) #20 ENSDORG00000010216 #21 Tubb2b (ENSDORG00000029767) #22 ENSDORG00000025335 ENSDORG00000030064 #22 Bphl (ENSDORG00000012891) #23 Lyrm4 (ENSDORG00000029399) #9 Fars2 (ENSDORG00000014796) #8 Nrn1 (ENSDORG00000028098) #7 F13a1 (ENSDORG00000005435) Ly86 (ENSDORG00000009360) Rreb1 (ENSDORG00000006979) Ssr1 (ENSDORG00000009319) Cage1 (ENSDORG00000004490) Riok1 (ENSDORG00000008530) Dsp (ENSDORG00000000359) Snrnp48 (ENSDORG00000015140) Bmp6 (ENSDORG00000004681) Kangaroo rat MODERN SPECIES 351 ENSDORG00000029944 #11 ENSDORG00000011196 #11 ENSDORG00000028660 Cdyl (ENSDORG00000002812) #10 ENSDORG00000023689 ENSDORG00000004072 #14 Tex56 (ENSDORG00000024679) #15 ENSDORG00000025392 ENSDORG00000025074 #16 Prpf4b (ENSDORG00000000464) #17 Pxdc1 (ENSDORG00000029672) #19 Slc22a23 (ENSDORG00000010217) #20 ENSDORG00000010216 #21 Tubb2b (ENSDORG00000029767) #22 ENSDORG00000025335 ENSDORG00000030064 #22 Bphl (ENSDORG00000012891) #23 Lyrm4 (ENSDORG00000029399) #9 Fars2 (ENSDORG00000014796) #8 Nrn1 (ENSDORG00000028098) #7 F13a1 (ENSDORG00000005435) Ly86 (ENSDORG00000009360) Rreb1 (ENSDORG00000006979) Ssr1 (ENSDORG00000009319) Cage1 (ENSDORG00000004490) Riok1 (ENSDORG00000008530) Dsp (ENSDORG00000000359) Snrnp48 (ENSDORG00000015140) Bmp6 (ENSDORG00000004681) Txndc5 (ENSDORG00000004682) ENSDORG00000027767 Tree shrew DUPLICATION Tree shrew MODERN SPECIES 1075 ENSTBEG00000004854 #22 ENSTBEG00000004015 #22 ENSTBEG00000003715 Tree shrew MODERN SPECIES 1075 ENSTBEG00000004854 #22 ENSTBEG00000004015 #22 ENSTBEG00000003715 Primates ANCESTRAL SPECIES 5 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Strepsirrhini ANCESTRAL SPECIES 29 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT01000000214902 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 141 NRN1 (ENSOGAG00000027827) #7 FARS2 (ENSOGAG00000001040) #8 ENSOGAG00000015193 PPP1R3G (ENSOGAG00000034237) RPP40 (ENSOGAG00000006055) #11 ENSOGAG00000015920 #10 ECI2 (ENSOGAG00000011635) #14 ENSOGAG00000011631 #15 FAM217A (ENSOGAG00000011629) #16 PRPF4B (ENSOGAG00000033081) #17 FAM50B (ENSOGAG00000016493) #18 PXDC1 (ENSOGAG00000016490) #19 SLC22A23 (ENSOGAG00000003183) #20 ENSOGAG00000027336 #21 TUBB2B (ENSOGAG00000032955) #22 ENSOGAG00000007496 #22 BPHL (ENSOGAG00000007494) #23 RIPK1 (ENSOGAG00000007491) #24 NQO2 (ENSOGAG00000029985) #25 SERPINB6 (ENSOGAG00000028420) ##26 SERPINB9 (ENSOGAG00000029897) #27 ENSOGAG00000002491 #28 Bushbaby MODERN SPECIES 141 F13A1 (ENSOGAG00000001042) NRN1 (ENSOGAG00000027827) #7 FARS2 (ENSOGAG00000001040) #8 ENSOGAG00000015193 PPP1R3G (ENSOGAG00000034237) RPP40 (ENSOGAG00000006055) #11 ENSOGAG00000015920 #10 ECI2 (ENSOGAG00000011635) #14 ENSOGAG00000011631 #15 FAM217A (ENSOGAG00000011629) #16 PRPF4B (ENSOGAG00000033081) #17 FAM50B (ENSOGAG00000016493) #18 PXDC1 (ENSOGAG00000016490) #19 SLC22A23 (ENSOGAG00000003183) #20 ENSOGAG00000027336 #21 TUBB2B (ENSOGAG00000032955) #22 ENSOGAG00000007496 #22 BPHL (ENSOGAG00000007494) #23 RIPK1 (ENSOGAG00000007491) #24 NQO2 (ENSOGAG00000029985) #25 SERPINB6 (ENSOGAG00000028420) ##26 SERPINB9 (ENSOGAG00000029897) #27 ENSOGAG00000002491 #28 Lemuriformes ANCESTRAL SPECIES 63 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Lemuriformes_a ANCESTRAL SPECIES 166 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155105 #14 ENSGT00940000168960 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Greater bamboo lemur MODERN SPECIES 610 ENSPSMG00000020920 ECI2 (ENSPSMG00000020985) #14 ENSPSMG00000020994 #15 FAM217A (ENSPSMG00000021011) #16 PRPF4B (ENSPSMG00000021046) #17 FAM50B (ENSPSMG00000021061) #18 PXDC1 (ENSPSMG00000021073) #19 SLC22A23 (ENSPSMG00000021123) #20 PSMG4 (ENSPSMG00000021142) #21 ENSPSMG00000021152 #22 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 497 SLC22A23 (ENSPCOG00000007966) #20 PSMG4 (ENSPCOG00000014849) #21 ENSPCOG00000020515 #22 TUBB2B (ENSPCOG00000015941) #22 BPHL (ENSPCOG00000020939) #23 RIPK1 (ENSPCOG00000024336) #24 NQO2 (ENSPCOG00000017951) #25 SERPINB6 (ENSPCOG00000019023) ##26 SERPINB9 (ENSPCOG00000025594) #27 SERPINB1 (ENSPCOG00000003266) #28 WRNIP1 (ENSPCOG00000017172) #29 ENSPCOG00000020178 MYLK4 (ENSPCOG00000026431) #30 ENSPCOG00000019865 GMDS (ENSPCOG00000028639) #31 FOXC1 (ENSPCOG00000026920) FOXF2 (ENSPCOG00000022131) Coquerels sifaka MODERN SPECIES 497 SLC22A23 (ENSPCOG00000007966) #20 PSMG4 (ENSPCOG00000014849) #21 ENSPCOG00000020515 #22 TUBB2B (ENSPCOG00000015941) #22 BPHL (ENSPCOG00000020939) #23 RIPK1 (ENSPCOG00000024336) #24 NQO2 (ENSPCOG00000017951) #25 SERPINB6 (ENSPCOG00000019023) ##26 SERPINB9 (ENSPCOG00000025594) #27 SERPINB1 (ENSPCOG00000003266) #28 WRNIP1 (ENSPCOG00000017172) #29 ENSPCOG00000020178 MYLK4 (ENSPCOG00000026431) #30 ENSPCOG00000019865 GMDS (ENSPCOG00000028639) #31 FOXC1 (ENSPCOG00000026920) FOXF2 (ENSPCOG00000022131) Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 5 RREB1 (ENSMICG00000003683) LY86 (ENSMICG00000016183) F13A1 (ENSMICG00000011731) NRN1 (ENSMICG00000003842) #7 FARS2 (ENSMICG00000003828) #8 LYRM4 (ENSMICG00000028549) #9 RPP40 (ENSMICG00000003297) #11 ENSMICG00000011268 #10 ECI2 (ENSMICG00000007925) #14 ENSMICG00000007923 #15 FAM217A (ENSMICG00000011781) #16 PRPF4B (ENSMICG00000011768) #17 PXDC1 (ENSMICG00000027387) #19 SLC22A23 (ENSMICG00000010664) #20 ENSMICG00000027920 #21 ENSMICG00000000129 #22 TUBB2B (ENSMICG00000010649) #22 ENSMICG00000026983 #22 BPHL (ENSMICG00000010641) #23 RIPK1 (ENSMICG00000010628) #24 NQO2 (ENSMICG00000010625) #25 ENSMICG00000038515 ENSMICG00000041621 SERPINB6 (ENSMICG00000001981) ##26 ENSMICG00000033572 SERPINB9 (ENSMICG00000032410) #27 SERPINB1 (ENSMICG00000016870) #28 WRNIP1 (ENSMICG00000031945) #29 MYLK4 (ENSMICG00000031773) #30 GMDS (ENSMICG00000047521) #31 ENSMICG00000030022 Mouse lemur MODERN SPECIES 5 LY86 (ENSMICG00000016183) F13A1 (ENSMICG00000011731) NRN1 (ENSMICG00000003842) #7 FARS2 (ENSMICG00000003828) #8 LYRM4 (ENSMICG00000028549) #9 RPP40 (ENSMICG00000003297) #11 ENSMICG00000011268 #10 ECI2 (ENSMICG00000007925) #14 ENSMICG00000007923 #15 FAM217A (ENSMICG00000011781) #16 PRPF4B (ENSMICG00000011768) #17 PXDC1 (ENSMICG00000027387) #19 SLC22A23 (ENSMICG00000010664) #20 ENSMICG00000027920 #21 ENSMICG00000000129 #22 TUBB2B (ENSMICG00000010649) #22 ENSMICG00000026983 #22 BPHL (ENSMICG00000010641) #23 RIPK1 (ENSMICG00000010628) #24 NQO2 (ENSMICG00000010625) #25 ENSMICG00000038515 ENSMICG00000041621 SERPINB6 (ENSMICG00000001981) ##26 ENSMICG00000033572 SERPINB9 (ENSMICG00000032410) #27 SERPINB1 (ENSMICG00000016870) #28 WRNIP1 (ENSMICG00000031945) #29 MYLK4 (ENSMICG00000031773) #30 GMDS (ENSMICG00000047521) #31 ENSMICG00000030022 FOXF2 (ENSMICG00000029665) Mouse lemur MODERN SPECIES 5 F13A1 (ENSMICG00000011731) NRN1 (ENSMICG00000003842) #7 FARS2 (ENSMICG00000003828) #8 LYRM4 (ENSMICG00000028549) #9 RPP40 (ENSMICG00000003297) #11 ENSMICG00000011268 #10 ECI2 (ENSMICG00000007925) #14 ENSMICG00000007923 #15 FAM217A (ENSMICG00000011781) #16 PRPF4B (ENSMICG00000011768) #17 PXDC1 (ENSMICG00000027387) #19 SLC22A23 (ENSMICG00000010664) #20 ENSMICG00000027920 #21 ENSMICG00000000129 #22 TUBB2B (ENSMICG00000010649) #22 ENSMICG00000026983 #22 BPHL (ENSMICG00000010641) #23 RIPK1 (ENSMICG00000010628) #24 NQO2 (ENSMICG00000010625) #25 ENSMICG00000038515 ENSMICG00000041621 SERPINB6 (ENSMICG00000001981) ##26 ENSMICG00000033572 SERPINB9 (ENSMICG00000032410) #27 SERPINB1 (ENSMICG00000016870) #28 WRNIP1 (ENSMICG00000031945) #29 MYLK4 (ENSMICG00000031773) #30 GMDS (ENSMICG00000047521) #31 ENSMICG00000030022 FOXF2 (ENSMICG00000029665) ENSMICG00000043294 Haplorrhini ANCESTRAL SPECIES 2 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Simiiformes ANCESTRAL SPECIES 5 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Catarrhini ANCESTRAL SPECIES 5 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00910000147563 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000154295.y.b.b ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00910000147563 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Rhinopithecus ANCESTRAL SPECIES 233 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154632.q.a.a.b ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000154295.y.b.b ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00910000147563 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 Black snub-nosed monkey MODERN SPECIES 1511 RPP40 (ENSRBIG00000035800) #11 CDYL (ENSRBIG00000041073) #10 ENSRBIG00000041293 #14 ENSRBIG00000037967 #15 ENSRBIG00000038999 FAM217A (ENSRBIG00000032885) #16 PRPF4B (ENSRBIG00000033308) #17 ENSRBIG00000043910 FAM50B (ENSRBIG00000005193) #18 ENSRBIG00000030150 PXDC1 (ENSRBIG00000034887) #19 ENSRBIG00000028534 SLC22A23 (ENSRBIG00000033453) #20 PSMG4 (ENSRBIG00000030513) #21 TUBB2B (ENSRBIG00000044962) #22 BPHL (ENSRBIG00000023282) #23 RIPK1 (ENSRBIG00000044016) #24 NQO2 (ENSRBIG00000031353) #25 ENSRBIG00000023655 SERPINB6 (ENSRBIG00000035085) ##26 SERPINB9 (ENSRBIG00000044955) #27 SERPINB1 (ENSRBIG00000035002) #28 WRNIP1 (ENSRBIG00000030451) #29 MYLK4 (ENSRBIG00000036683) #30 GMDS (ENSRBIG00000032090) #31 ENSRBIG00000024296 FOXF2 (ENSRBIG00000040570) EXOC2 (ENSRBIG00000000949) HUS1B (ENSRBIG00000029067) XRCC4 (ENSRBIG00000035524) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 985 PXDC1 (ENSRROG00000038805) #19 ENSRROG00000034402 SLC22A23 (ENSRROG00000043800) #20 PSMG4 (ENSRROG00000025040) #21 TUBB2B (ENSRROG00000027371) #22 BPHL (ENSRROG00000024570) #23 RIPK1 (ENSRROG00000035266) #24 NQO2 (ENSRROG00000032281) #25 ENSRROG00000025624 SERPINB6 (ENSRROG00000042629) ##26 SERPINB9 (ENSRROG00000029131) #27 SERPINB1 (ENSRROG00000029468) #28 WRNIP1 (ENSRROG00000030448) #29 MYLK4 (ENSRROG00000038081) #30 GMDS (ENSRROG00000030799) #31 Golden snub-nosed monkey MODERN SPECIES 36 ENSRROG00000035069 #22 Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000154295.y.b.b ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00390000001231.s.a.a.b Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 8 F13A1 (ENSCSAG00000007361) NRN1 (ENSCSAG00000007350) #7 FARS2 (ENSCSAG00000007344) #8 LYRM4 (ENSCSAG00000007314) #9 PPP1R3G (ENSCSAG00000019110) RPP40 (ENSCSAG00000007307) #11 CDYL (ENSCSAG00000007301) #10 ECI2 (ENSCSAG00000007294) #14 ENSCSAG00000007286 #15 FAM217A (ENSCSAG00000007279) #16 PRPF4B (ENSCSAG00000007273) #17 FAM50B (ENSCSAG00000019111) #18 PXDC1 (ENSCSAG00000007263) #19 SLC22A23 (ENSCSAG00000007261) #20 PSMG4 (ENSCSAG00000007253) #21 TUBB2B (ENSCSAG00000007249) #22 TUBB2A (ENSCSAG00000007247) #22 BPHL (ENSCSAG00000007243) #23 RIPK1 (ENSCSAG00000007224) #24 NQO2 (ENSCSAG00000007218) #25 SERPINB6 (ENSCSAG00000007210) ##26 SERPINB9 (ENSCSAG00000007207) #27 SERPINB1 (ENSCSAG00000007203) #28 WRNIP1 (ENSCSAG00000007198) #29 MYLK4 (ENSCSAG00000007191) #30 ENSCSAG00000007184 #31 FOXC1 (ENSCSAG00000019112) FOXF2 (ENSCSAG00000007180) FOXQ1 (ENSCSAG00000019113) ENSCSAG00000007177 EXOC2 (ENSCSAG00000007171) Vervet Monkey MODERN SPECIES 8 NRN1 (ENSCSAG00000007350) #7 FARS2 (ENSCSAG00000007344) #8 LYRM4 (ENSCSAG00000007314) #9 PPP1R3G (ENSCSAG00000019110) RPP40 (ENSCSAG00000007307) #11 CDYL (ENSCSAG00000007301) #10 ECI2 (ENSCSAG00000007294) #14 ENSCSAG00000007286 #15 FAM217A (ENSCSAG00000007279) #16 PRPF4B (ENSCSAG00000007273) #17 FAM50B (ENSCSAG00000019111) #18 PXDC1 (ENSCSAG00000007263) #19 SLC22A23 (ENSCSAG00000007261) #20 PSMG4 (ENSCSAG00000007253) #21 TUBB2B (ENSCSAG00000007249) #22 TUBB2A (ENSCSAG00000007247) #22 BPHL (ENSCSAG00000007243) #23 RIPK1 (ENSCSAG00000007224) #24 NQO2 (ENSCSAG00000007218) #25 SERPINB6 (ENSCSAG00000007210) ##26 SERPINB9 (ENSCSAG00000007207) #27 SERPINB1 (ENSCSAG00000007203) #28 WRNIP1 (ENSCSAG00000007198) #29 MYLK4 (ENSCSAG00000007191) #30 ENSCSAG00000007184 #31 FOXC1 (ENSCSAG00000019112) FOXF2 (ENSCSAG00000007180) FOXQ1 (ENSCSAG00000019113) ENSCSAG00000007177 EXOC2 (ENSCSAG00000007171) IRF4 (ENSCSAG00000007164) Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00940000154632.q.a.a.b ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000154295.y.b.b ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00950000183029.B.c.b.b.b.u.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Cercopithecinae_b ANCESTRAL SPECIES 37 ENSGT00910000146968 ENSGT00950000183142.a.b.a.b.p ENSGT00910000147352 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000154632.q.a.a.b ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00950000183029.B.c.b.b.b.u.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Olive baboon MODERN SPECIES 16 FARS2 (ENSPANG00000018208) #8 ENSPANG00000023576 ENSPANG00000046029 RPP40 (ENSPANG00000017865) #11 ENSPANG00000045914 CDYL (ENSPANG00000023577) #10 ECI2 (ENSPANG00000025189) #14 ENSPANG00000021758 #15 FAM217A (ENSPANG00000009605) #16 PRPF4B (ENSPANG00000008444) #17 ENSPANG00000039354 FAM50B (ENSPANG00000006202) #18 ENSPANG00000037486 #19 SLC22A23 (ENSPANG00000023485) #20 PSMG4 (ENSPANG00000007366) #21 TUBB2B (ENSPANG00000047634) #22 RIPK1 (ENSPANG00000024400) #24 ENSPANG00000038780 ENSPANG00000033442 NQO2 (ENSPANG00000033064) #25 ENSPANG00000015755 #27 SERPINB1 (ENSPANG00000030460) #28 ENSPANG00000041893 WRNIP1 (ENSPANG00000044052) #29 MYLK4 (ENSPANG00000007409) #30 GMDS (ENSPANG00000020544) #31 FOXC1 (ENSPANG00000011156) FOXF2 (ENSPANG00000044013) FOXQ1 (ENSPANG00000037731) EXOC2 (ENSPANG00000010769) IRF4 (ENSPANG00000023389) Cercopithecinae_d ANCESTRAL SPECIES 41 ENSGT00910000146968 ENSGT00950000183142.a.b.a.b.p ENSGT00910000147352 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000154632.q.a.a.b ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00950000183029.B.c.b.b.b.u.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Sooty mangabey MODERN SPECIES 247 ECI2 (ENSCATG00000039055) #14 ENSCATG00000034182 ENSCATG00000038905 #15 FAM217A (ENSCATG00000045004) #16 PRPF4B (ENSCATG00000039868) #17 FAM50B (ENSCATG00000019736) #18 PXDC1 (ENSCATG00000034625) #19 SLC22A23 (ENSCATG00000022177) #20 PSMG4 (ENSCATG00000036332) #21 TUBB2B (ENSCATG00000017036) #22 BPHL (ENSCATG00000032656) #23 RIPK1 (ENSCATG00000032918) #24 ENSCATG00000021756 NQO2 (ENSCATG00000027170) #25 SERPINB6 (ENSCATG00000030479) ##26 SERPINB1 (ENSCATG00000039910) #28 WRNIP1 (ENSCATG00000041978) #29 MYLK4 (ENSCATG00000036658) #30 ENSCATG00000033597 GMDS (ENSCATG00000039562) #31 ENSCATG00000043623 FOXF2 (ENSCATG00000005462) FOXQ1 (ENSCATG00000017933) HUS1B (ENSCATG00000008071) EXOC2 (ENSCATG00000037603) Drill DUPLICATION Drill MODERN SPECIES 899 ENSMLEG00000030282 ENSMLEG00000034332 ENSMLEG00000041575 RPP40 (ENSMLEG00000040851) #11 CDYL (ENSMLEG00000010888) #10 ECI2 (ENSMLEG00000033204) #14 ENSMLEG00000037689 ENSMLEG00000031291 #15 FAM217A (ENSMLEG00000039857) #16 PRPF4B (ENSMLEG00000030421) #17 ENSMLEG00000021954 FAM50B (ENSMLEG00000005931) #18 PXDC1 (ENSMLEG00000037642) #19 SLC22A23 (ENSMLEG00000029569) #20 PSMG4 (ENSMLEG00000035294) #21 TUBB2B (ENSMLEG00000037972) #22 ENSMLEG00000034009 #22 BPHL (ENSMLEG00000033802) #23 RIPK1 (ENSMLEG00000025829) #24 ENSMLEG00000033411 NQO2 (ENSMLEG00000044409) #25 SERPINB6 (ENSMLEG00000013840) ##26 SERPINB9 (ENSMLEG00000028963) #27 SERPINB1 (ENSMLEG00000031662) #28 ENSMLEG00000011844 #29 MYLK4 (ENSMLEG00000043022) #30 ENSMLEG00000041640 ENSMLEG00000044127 ENSMLEG00000027734 ENSMLEG00000019226 EXOC2 (ENSMLEG00000033278) Drill MODERN SPECIES 899 ENSMLEG00000034332 ENSMLEG00000041575 RPP40 (ENSMLEG00000040851) #11 CDYL (ENSMLEG00000010888) #10 ECI2 (ENSMLEG00000033204) #14 ENSMLEG00000037689 ENSMLEG00000031291 #15 FAM217A (ENSMLEG00000039857) #16 PRPF4B (ENSMLEG00000030421) #17 ENSMLEG00000021954 FAM50B (ENSMLEG00000005931) #18 PXDC1 (ENSMLEG00000037642) #19 SLC22A23 (ENSMLEG00000029569) #20 PSMG4 (ENSMLEG00000035294) #21 TUBB2B (ENSMLEG00000037972) #22 ENSMLEG00000034009 #22 BPHL (ENSMLEG00000033802) #23 RIPK1 (ENSMLEG00000025829) #24 ENSMLEG00000033411 NQO2 (ENSMLEG00000044409) #25 SERPINB6 (ENSMLEG00000013840) ##26 SERPINB9 (ENSMLEG00000028963) #27 SERPINB1 (ENSMLEG00000031662) #28 ENSMLEG00000011844 #29 MYLK4 (ENSMLEG00000043022) #30 ENSMLEG00000041640 ENSMLEG00000044127 ENSMLEG00000027734 ENSMLEG00000019226 EXOC2 (ENSMLEG00000033278) IRF4 (ENSMLEG00000004768) Macaca ANCESTRAL SPECIES 23 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00940000154632.q.a.a.b ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000154295.y.b.b ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00950000183029.B.c.b.b.b.u.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00390000001231.s.a.a.b Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 136 ENSMNEG00000045067 ENSMNEG00000003878 RPP40 (ENSMNEG00000041986) #11 CDYL (ENSMNEG00000038983) #10 ECI2 (ENSMNEG00000000039) #14 ENSMNEG00000034908 ENSMNEG00000020877 #15 FAM217A (ENSMNEG00000035674) #16 PRPF4B (ENSMNEG00000036107) #17 ENSMNEG00000039272 FAM50B (ENSMNEG00000017045) #18 PXDC1 (ENSMNEG00000029513) #19 ENSMNEG00000040334 SLC22A23 (ENSMNEG00000035865) #20 PSMG4 (ENSMNEG00000045254) #21 TUBB2B (ENSMNEG00000000042) #22 ENSMNEG00000030834 #22 BPHL (ENSMNEG00000034992) #23 RIPK1 (ENSMNEG00000029731) #24 ENSMNEG00000030982 NQO2 (ENSMNEG00000039080) #25 SERPINB6 (ENSMNEG00000038077) ##26 SERPINB9 (ENSMNEG00000018071) #27 SERPINB1 (ENSMNEG00000031098) #28 WRNIP1 (ENSMNEG00000032509) #29 MYLK4 (ENSMNEG00000033807) #30 ENSMNEG00000035768 ENSMNEG00000036375 GMDS (ENSMNEG00000035111) #31 FOXC1 (ENSMNEG00000006978) Pig-tailed macaque MODERN SPECIES 136 ENSMNEG00000003878 RPP40 (ENSMNEG00000041986) #11 CDYL (ENSMNEG00000038983) #10 ECI2 (ENSMNEG00000000039) #14 ENSMNEG00000034908 ENSMNEG00000020877 #15 FAM217A (ENSMNEG00000035674) #16 PRPF4B (ENSMNEG00000036107) #17 ENSMNEG00000039272 FAM50B (ENSMNEG00000017045) #18 PXDC1 (ENSMNEG00000029513) #19 ENSMNEG00000040334 SLC22A23 (ENSMNEG00000035865) #20 PSMG4 (ENSMNEG00000045254) #21 TUBB2B (ENSMNEG00000000042) #22 ENSMNEG00000030834 #22 BPHL (ENSMNEG00000034992) #23 RIPK1 (ENSMNEG00000029731) #24 ENSMNEG00000030982 NQO2 (ENSMNEG00000039080) #25 SERPINB6 (ENSMNEG00000038077) ##26 SERPINB9 (ENSMNEG00000018071) #27 SERPINB1 (ENSMNEG00000031098) #28 WRNIP1 (ENSMNEG00000032509) #29 MYLK4 (ENSMNEG00000033807) #30 ENSMNEG00000035768 ENSMNEG00000036375 GMDS (ENSMNEG00000035111) #31 FOXC1 (ENSMNEG00000006978) Macaca_a ANCESTRAL SPECIES 24 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00910000147352 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Crab-eating macaque MODERN SPECIES 14 F13A1 (ENSMFAG00000001306) NRN1 (ENSMFAG00000062211) #7 FARS2 (ENSMFAG00000043484) #8 ENSMFAG00000002120 #9 ENSMFAG00000054956 RPP40 (ENSMFAG00000043100) #11 CDYL (ENSMFAG00000042478) #10 ENSMFAG00000061853 ECI2 (ENSMFAG00000039175) #14 ENSMFAG00000044085 #15 FAM217A (ENSMFAG00000044867) #16 PRPF4B (ENSMFAG00000018980) #17 PXDC1 (ENSMFAG00000044456) #19 SLC22A23 (ENSMFAG00000034156) #20 PSMG4 (ENSMFAG00000039884) #21 ENSMFAG00000003772 #22 BPHL (ENSMFAG00000041437) #23 RIPK1 (ENSMFAG00000037119) #24 ENSMFAG00000043217 NQO2 (ENSMFAG00000035954) #25 SERPINB6 (ENSMFAG00000043844) ##26 SERPINB9 (ENSMFAG00000042251) #27 SERPINB1 (ENSMFAG00000001421) #28 WRNIP1 (ENSMFAG00000001313) #29 MYLK4 (ENSMFAG00000057340) #30 GMDS (ENSMFAG00000031316) #31 FOXF2 (ENSMFAG00000036369) FOXQ1 (ENSMFAG00000062586) EXOC2 (ENSMFAG00000045215) IRF4 (ENSMFAG00000045100) DUSP22 (ENSMFAG00000034531) Rhesus MODERN SPECIES 14 ENSMMUG00000057424 ENSMMUG00000049865 PPP1R3G (ENSMMUG00000061878) RPP40 (ENSMMUG00000004966) #11 CDYL (ENSMMUG00000004964) #10 ENSMMUG00000055619 ENSMMUG00000054791 ECI2 (ENSMMUG00000014021) #14 TEX56P (ENSMMUG00000014020) #15 FAM217A (ENSMMUG00000014019) #16 PRPF4B (ENSMMUG00000014017) #17 FAM50B (ENSMMUG00000039209) #18 PXDC1 (ENSMMUG00000010926) #19 SLC22A23 (ENSMMUG00000001371) #20 PSMG4 (ENSMMUG00000011031) #21 TUBB2B (ENSMMUG00000023785) #22 BPHL (ENSMMUG00000008483) #23 RIPK1 (ENSMMUG00000008485) #24 NQO2 (ENSMMUG00000008487) #25 SERPINB6 (ENSMMUG00000037816) ##26 SERPINB9 (ENSMMUG00000011719) #27 SERPINB1 (ENSMMUG00000042368) #28 WRNIP1 (ENSMMUG00000007143) #29 MYLK4 (ENSMMUG00000007144) #30 GMDS (ENSMMUG00000005779) #31 FOXC1 (ENSMMUG00000005778) FOXF2 (ENSMMUG00000004540) FOXQ1 (ENSMMUG00000059043) EXOC2 (ENSMMUG00000023558) IRF4 (ENSMMUG00000018513) DUSP22 (ENSMMUG00000018514) Hominoidea ANCESTRAL SPECIES 4 ENSGT00940000161627.a.a.a.b.b.b.b.b.b ENSGT00910000146968 ENSGT00940000169445 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b.c.a.a ENSGT00940000156563 #25 ENSGT00910000147563 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Gibbon DUPLICATION Gibbon MODERN SPECIES 23 FARS2 (ENSNLEG00000011479) #8 ENSNLEG00000030412 ENSNLEG00000011472 ENSNLEG00000028872 PPP1R3G (ENSNLEG00000018873) RPP40 (ENSNLEG00000034397) #11 CDYL (ENSNLEG00000011446) #10 ENSNLEG00000031998 ECI2 (ENSNLEG00000011371) #14 ENSNLEG00000011349 #15 ENSNLEG00000011341 #16 PRPF4B (ENSNLEG00000011291) #17 ENSNLEG00000031341 #19 SLC22A23 (ENSNLEG00000011273) #20 ENSNLEG00000011266 #21 TUBB2B (ENSNLEG00000011121) #22 TUBB2A (ENSNLEG00000031860) #22 BPHL (ENSNLEG00000028923) #23 RIPK1 (ENSNLEG00000011075) #24 ENSNLEG00000011073 NQO2 (ENSNLEG00000011051) #25 ENSNLEG00000029196 SERPINB6 (ENSNLEG00000011022) ##26 SERPINB9 (ENSNLEG00000031330) #27 SERPINB1 (ENSNLEG00000010958) #28 WRNIP1 (ENSNLEG00000010928) #29 MYLK4 (ENSNLEG00000010906) #30 ENSNLEG00000035231 GMDS (ENSNLEG00000010832) #31 ENSNLEG00000010830 ENSNLEG00000029356 Gibbon MODERN SPECIES 23 ENSNLEG00000030412 ENSNLEG00000011472 ENSNLEG00000028872 PPP1R3G (ENSNLEG00000018873) RPP40 (ENSNLEG00000034397) #11 CDYL (ENSNLEG00000011446) #10 ENSNLEG00000031998 ECI2 (ENSNLEG00000011371) #14 ENSNLEG00000011349 #15 ENSNLEG00000011341 #16 PRPF4B (ENSNLEG00000011291) #17 ENSNLEG00000031341 #19 SLC22A23 (ENSNLEG00000011273) #20 ENSNLEG00000011266 #21 TUBB2B (ENSNLEG00000011121) #22 TUBB2A (ENSNLEG00000031860) #22 BPHL (ENSNLEG00000028923) #23 RIPK1 (ENSNLEG00000011075) #24 ENSNLEG00000011073 NQO2 (ENSNLEG00000011051) #25 ENSNLEG00000029196 SERPINB6 (ENSNLEG00000011022) ##26 SERPINB9 (ENSNLEG00000031330) #27 SERPINB1 (ENSNLEG00000010958) #28 WRNIP1 (ENSNLEG00000010928) #29 MYLK4 (ENSNLEG00000010906) #30 ENSNLEG00000035231 GMDS (ENSNLEG00000010832) #31 ENSNLEG00000010830 ENSNLEG00000029356 ENSNLEG00000010829 Hominidae ANCESTRAL SPECIES 5 ENSGT00910000146968 ENSGT00940000169445 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00550000076325 ENSGT00530000063480.b.h ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b.c.a.a ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Orangutan MODERN SPECIES 19 ENSPPYG00000039334 ENSPPYG00000030077 PPP1R3G (ENSPPYG00000040553) RPP40 (ENSPPYG00000016194) #11 ENSPPYG00000016193 CDYL (ENSPPYG00000016192) #10 ENSPPYG00000033633 ECI2 (ENSPPYG00000016190) #14 ENSPPYG00000016189 #15 ENSPPYG00000016188 #16 PRPF4B (ENSPPYG00000016187) #17 FAM50B (ENSPPYG00000016184) #18 PXDC1 (ENSPPYG00000041429) #19 SLC22A23 (ENSPPYG00000016182) #20 ENSPPYG00000016181 #21 TUBB2B (ENSPPYG00000016180) #22 BPHL (ENSPPYG00000016179) #23 RIPK1 (ENSPPYG00000016178) #24 NQO2 (ENSPPYG00000016176) #25 SERPINB6 (ENSPPYG00000016174) ##26 SERPINB9 (ENSPPYG00000016173) #27 SERPINB1 (ENSPPYG00000016172) #28 WRNIP1 (ENSPPYG00000041417) #29 MYLK4 (ENSPPYG00000016170) #30 GMDS (ENSPPYG00000016168) #31 FOXC1 (ENSPPYG00000016167) FOXF2 (ENSPPYG00000016166) FOXQ1 (ENSPPYG00000016165) EXOC2 (ENSPPYG00000016162) IRF4 (ENSPPYG00000016161) DUSP22 (ENSPPYG00000016160) Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00910000146968 ENSGT00940000169445 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00550000076325 ENSGT00530000063480.b.h ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b.c.a.a ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Gorilla DUPLICATION Gorilla MODERN SPECIES 19 ENSGGOG00000039934 PPP1R3G (ENSGGOG00000025700) RPP40 (ENSGGOG00000013764) #11 ENSGGOG00000025602 CDYL (ENSGGOG00000022529) #10 ENSGGOG00000024917 ENSGGOG00000042566 ECI2 (ENSGGOG00000006430) #14 ENSGGOG00000023940 #15 ENSGGOG00000034975 #16 PRPF4B (ENSGGOG00000006422) #17 ENSGGOG00000044208 PXDC1 (ENSGGOG00000000462) #19 SLC22A23 (ENSGGOG00000012609) #20 ENSGGOG00000012606 #21 TUBB2B (ENSGGOG00000002310) #22 ENSGGOG00000041508 #22 BPHL (ENSGGOG00000012596) #23 RIPK1 (ENSGGOG00000012589) #24 NQO2 (ENSGGOG00000011077) #25 SERPINB6 (ENSGGOG00000016546) ##26 SERPINB9 (ENSGGOG00000038562) #27 SERPINB1 (ENSGGOG00000007770) #28 WRNIP1 (ENSGGOG00000022046) #29 MYLK4 (ENSGGOG00000004856) #30 GMDS (ENSGGOG00000005663) #31 ENSGGOG00000009269 ENSGGOG00000022142 FOXF2 (ENSGGOG00000013479) ENSGGOG00000038740 HUS1B (ENSGGOG00000007415) Gorilla MODERN SPECIES 19 PPP1R3G (ENSGGOG00000025700) RPP40 (ENSGGOG00000013764) #11 ENSGGOG00000025602 CDYL (ENSGGOG00000022529) #10 ENSGGOG00000024917 ENSGGOG00000042566 ECI2 (ENSGGOG00000006430) #14 ENSGGOG00000023940 #15 ENSGGOG00000034975 #16 PRPF4B (ENSGGOG00000006422) #17 ENSGGOG00000044208 PXDC1 (ENSGGOG00000000462) #19 SLC22A23 (ENSGGOG00000012609) #20 ENSGGOG00000012606 #21 TUBB2B (ENSGGOG00000002310) #22 ENSGGOG00000041508 #22 BPHL (ENSGGOG00000012596) #23 RIPK1 (ENSGGOG00000012589) #24 NQO2 (ENSGGOG00000011077) #25 SERPINB6 (ENSGGOG00000016546) ##26 SERPINB9 (ENSGGOG00000038562) #27 SERPINB1 (ENSGGOG00000007770) #28 WRNIP1 (ENSGGOG00000022046) #29 MYLK4 (ENSGGOG00000004856) #30 GMDS (ENSGGOG00000005663) #31 ENSGGOG00000009269 ENSGGOG00000022142 FOXF2 (ENSGGOG00000013479) ENSGGOG00000038740 HUS1B (ENSGGOG00000007415) EXOC2 (ENSGGOG00000005415) Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00940000157289.a #9 ENSGT00940000161627.a.a.a.b.b.b.b.b.b ENSGT00910000146968 ENSGT00940000169445 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.t #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b.c.a.a ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Pan ANCESTRAL SPECIES 29 ENSGT00940000169445 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.t #10 ENSGT00550000076325 ENSGT01020000230346.C.c.b.a.b ENSGT00910000147523 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00550000075030.n ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b.c.a.a ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Bonobo MODERN SPECIES 19 PPP1R3G (ENSPPAG00000010105) RPP40 (ENSPPAG00000023703) #11 ENSPPAG00000042882 CDYL (ENSPPAG00000036996) #10 ENSPPAG00000037535 ENSPPAG00000034861 ECI2 (ENSPPAG00000040308) #14 ENSPPAG00000030290 #15 ENSPPAG00000035868 #16 PRPF4B (ENSPPAG00000040144) #17 ENSPPAG00000036576 PXDC1 (ENSPPAG00000032898) #19 SLC22A23 (ENSPPAG00000033292) #20 ENSPPAG00000035910 #21 ENSPPAG00000035950 TUBB2A (ENSPPAG00000034122) #22 BPHL (ENSPPAG00000035074) #23 RIPK1 (ENSPPAG00000027763) #24 NQO2 (ENSPPAG00000016998) #25 SERPINB6 (ENSPPAG00000043993) ##26 SERPINB9 (ENSPPAG00000034571) #27 SERPINB1 (ENSPPAG00000041181) #28 WRNIP1 (ENSPPAG00000034495) #29 MYLK4 (ENSPPAG00000035250) #30 ENSPPAG00000022392 GMDS (ENSPPAG00000026874) #31 ENSPPAG00000039651 ENSPPAG00000039358 HUS1B (ENSPPAG00000023178) EXOC2 (ENSPPAG00000029339) IRF4 (ENSPPAG00000040992) Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 19 PPP1R3G (ENSPTRG00000042254) RPP40 (ENSPTRG00000017690) #11 ENSPTRG00000046429 CDYL (ENSPTRG00000017688) #10 ENSPTRG00000047562 ENSPTRG00000046313 ECI2 (ENSPTRG00000017687) #14 TEX56P (ENSPTRG00000017686) #15 ENSPTRG00000051400 #16 PRPF4B (ENSPTRG00000017683) #17 ENSPTRG00000051344 PXDC1 (ENSPTRG00000017679) #19 SLC22A23 (ENSPTRG00000017678) #20 PSMG4 (ENSPTRG00000033938) #21 ENSPTRG00000050739 #22 ENSPTRG00000048005 #22 ENSPTRG00000044345 #22 BPHL (ENSPTRG00000017673) #23 RIPK1 (ENSPTRG00000017672) #24 ENSPTRG00000048006 NQO2 (ENSPTRG00000017670) #25 SERPINB6 (ENSPTRG00000017669) ##26 SERPINB9 (ENSPTRG00000017668) #27 SERPINB1 (ENSPTRG00000017667) #28 WRNIP1 (ENSPTRG00000017666) #29 MYLK4 (ENSPTRG00000017665) #30 ENSPTRG00000047752 GMDS (ENSPTRG00000017663) #31 FOXC1 (ENSPTRG00000051406) ENSPTRG00000046603 FOXF2 (ENSPTRG00000017662) Chimpanzee MODERN SPECIES 19 ENSPTRG00000045800 PPP1R3G (ENSPTRG00000042254) RPP40 (ENSPTRG00000017690) #11 ENSPTRG00000046429 CDYL (ENSPTRG00000017688) #10 ENSPTRG00000047562 ENSPTRG00000046313 ECI2 (ENSPTRG00000017687) #14 TEX56P (ENSPTRG00000017686) #15 ENSPTRG00000051400 #16 PRPF4B (ENSPTRG00000017683) #17 ENSPTRG00000051344 PXDC1 (ENSPTRG00000017679) #19 SLC22A23 (ENSPTRG00000017678) #20 PSMG4 (ENSPTRG00000033938) #21 ENSPTRG00000050739 #22 ENSPTRG00000048005 #22 ENSPTRG00000044345 #22 BPHL (ENSPTRG00000017673) #23 RIPK1 (ENSPTRG00000017672) #24 ENSPTRG00000048006 NQO2 (ENSPTRG00000017670) #25 SERPINB6 (ENSPTRG00000017669) ##26 SERPINB9 (ENSPTRG00000017668) #27 SERPINB1 (ENSPTRG00000017667) #28 WRNIP1 (ENSPTRG00000017666) #29 MYLK4 (ENSPTRG00000017665) #30 ENSPTRG00000047752 GMDS (ENSPTRG00000017663) #31 FOXC1 (ENSPTRG00000051406) ENSPTRG00000046603 Chimpanzee MODERN SPECIES 19 RPP40 (ENSPTRG00000017690) #11 ENSPTRG00000046429 CDYL (ENSPTRG00000017688) #10 ENSPTRG00000047562 ENSPTRG00000046313 ECI2 (ENSPTRG00000017687) #14 TEX56P (ENSPTRG00000017686) #15 ENSPTRG00000051400 #16 PRPF4B (ENSPTRG00000017683) #17 ENSPTRG00000051344 PXDC1 (ENSPTRG00000017679) #19 SLC22A23 (ENSPTRG00000017678) #20 PSMG4 (ENSPTRG00000033938) #21 ENSPTRG00000050739 #22 ENSPTRG00000048005 #22 ENSPTRG00000044345 #22 BPHL (ENSPTRG00000017673) #23 RIPK1 (ENSPTRG00000017672) #24 ENSPTRG00000048006 NQO2 (ENSPTRG00000017670) #25 SERPINB6 (ENSPTRG00000017669) ##26 SERPINB9 (ENSPTRG00000017668) #27 SERPINB1 (ENSPTRG00000017667) #28 WRNIP1 (ENSPTRG00000017666) #29 MYLK4 (ENSPTRG00000017665) #30 ENSPTRG00000047752 GMDS (ENSPTRG00000017663) #31 FOXC1 (ENSPTRG00000051406) ENSPTRG00000046603 FOXF2 (ENSPTRG00000017662) FOXQ1 (ENSPTRG00000029883) Human DUPLICATION Human MODERN SPECIES 18 LY86 (ENSG00000112799) F13A1 (ENSG00000124491) NRN1 (ENSG00000124785) #7 FARS2 (ENSG00000145982) #8 LYRM4 (ENSG00000214113) #9 PPP1R3G (ENSG00000219607) RPP40 (ENSG00000124787) #11 CDYL (ENSG00000153046) #10 ECI2 (ENSG00000198721) #14 FAM217A (ENSG00000145975) #16 PRPF4B (ENSG00000112739) #17 FAM50B (ENSG00000145945) #18 PXDC1 (ENSG00000168994) #19 SLC22A23 (ENSG00000137266) #20 PSMG4 (ENSG00000180822) #21 TUBB2B (ENSG00000137285) #22 TUBB2A (ENSG00000137267) #22 BPHL (ENSG00000137274) #23 RIPK1 (ENSG00000137275) #24 NQO2 (ENSG00000124588) #25 SERPINB6 (ENSG00000124570) ##26 SERPINB9 (ENSG00000170542) #27 SERPINB1 (ENSG00000021355) #28 WRNIP1 (ENSG00000124535) #29 MYLK4 (ENSG00000145949) #30 GMDS (ENSG00000112699) #31 FOXC1 (ENSG00000054598) FOXF2 (ENSG00000137273) FOXQ1 (ENSG00000164379) HUS1B (ENSG00000188996) EXOC2 (ENSG00000112685) Human MODERN SPECIES 18 F13A1 (ENSG00000124491) NRN1 (ENSG00000124785) #7 FARS2 (ENSG00000145982) #8 LYRM4 (ENSG00000214113) #9 PPP1R3G (ENSG00000219607) RPP40 (ENSG00000124787) #11 CDYL (ENSG00000153046) #10 ECI2 (ENSG00000198721) #14 FAM217A (ENSG00000145975) #16 PRPF4B (ENSG00000112739) #17 FAM50B (ENSG00000145945) #18 PXDC1 (ENSG00000168994) #19 SLC22A23 (ENSG00000137266) #20 PSMG4 (ENSG00000180822) #21 TUBB2B (ENSG00000137285) #22 TUBB2A (ENSG00000137267) #22 BPHL (ENSG00000137274) #23 RIPK1 (ENSG00000137275) #24 NQO2 (ENSG00000124588) #25 SERPINB6 (ENSG00000124570) ##26 SERPINB9 (ENSG00000170542) #27 SERPINB1 (ENSG00000021355) #28 WRNIP1 (ENSG00000124535) #29 MYLK4 (ENSG00000145949) #30 GMDS (ENSG00000112699) #31 FOXC1 (ENSG00000054598) FOXF2 (ENSG00000137273) FOXQ1 (ENSG00000164379) HUS1B (ENSG00000188996) EXOC2 (ENSG00000112685) IRF4 (ENSG00000137265) Platyrrhini ANCESTRAL SPECIES 34 ENSGT00940000158071 #8 ENSGT00940000157289.a.a.b #9 ENSGT00940000157289.a.a.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209.f #19 ENSGT00390000009209.e.a #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746.c.a #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00390000001231.s.a Cebidae ANCESTRAL SPECIES 33 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a.a.b #9 ENSGT00940000157289.a.a.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209.e.a #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746.c.a #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000154953 ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00390000001231.s.a Marmoset MODERN SPECIES 16 NRN1 (ENSCJAG00000084548) #7 FARS2 (ENSCJAG00000021369) #8 ENSCJAG00000021370 #9 ENSCJAG00000069228 PPP1R3G (ENSCJAG00000021371) RPP40 (ENSCJAG00000021373) #11 CDYL (ENSCJAG00000021374) #10 ECI2 (ENSCJAG00000021377) #14 ENSCJAG00000040689 #15 FAM217A (ENSCJAG00000021382) #16 PRPF4B (ENSCJAG00000021385) #17 FAM50B (ENSCJAG00000017601) #18 PXDC1 (ENSCJAG00000017603) #19 SLC22A23 (ENSCJAG00000017606) #20 ENSCJAG00000017623 #21 TUBB2B (ENSCJAG00000045954) #22 ENSCJAG00000017700 #23 RIPK1 (ENSCJAG00000017707) #24 NQO2 (ENSCJAG00000017717) #25 ENSCJAG00000070954 ENSCJAG00000086827 ENSCJAG00000073772 ENSCJAG00000052093 ENSCJAG00000085203 ENSCJAG00000070049 ENSCJAG00000066289 ENSCJAG00000072237 ENSCJAG00000032252 ENSCJAG00000074016 ENSCJAG00000010562 ##26 SERPINB9 (ENSCJAG00000042376) #27 Cebidae_a ANCESTRAL SPECIES 42 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a.a.b #9 ENSGT00910000146968 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209.e.a #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746.c.a #23 ENSGT00940000159347 #24 ENSGT00390000006707.w.b ENSGT00940000156563 #25 ENSGT00940000154519.g.b ##26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000154953 ENSGT00940000162527 ENSGT00390000010872 ENSGT00390000001231.s.a.d ENSGT00940000159059 Bolivian squirrel monkey MODERN SPECIES 64 NRN1 (ENSSBOG00000016661) #7 FARS2 (ENSSBOG00000025432) #8 ENSSBOG00000033795 #9 ENSSBOG00000029411 RPP40 (ENSSBOG00000020297) #11 CDYL (ENSSBOG00000034197) #10 ECI2 (ENSSBOG00000021463) #14 ENSSBOG00000022307 #15 FAM217A (ENSSBOG00000029826) #16 PRPF4B (ENSSBOG00000014617) #17 ENSSBOG00000013265 FAM50B (ENSSBOG00000036113) #18 PXDC1 (ENSSBOG00000000499) #19 SLC22A23 (ENSSBOG00000026574) #20 ENSSBOG00000033676 TUBB2A (ENSSBOG00000023452) #22 ENSSBOG00000032695 #23 RIPK1 (ENSSBOG00000029217) #24 NQO2 (ENSSBOG00000028797) #25 SERPINB6 (ENSSBOG00000019279) ##26 SERPINB9 (ENSSBOG00000028507) #27 SERPINB1 (ENSSBOG00000024614) #28 WRNIP1 (ENSSBOG00000025057) #29 MYLK4 (ENSSBOG00000026264) #30 GMDS (ENSSBOG00000023900) #31 FOXF2 (ENSSBOG00000030093) EXOC2 (ENSSBOG00000023371) IRF4 (ENSSBOG00000034798) ENSSBOG00000024591 DUSP22 (ENSSBOG00000033220) ENSSBOG00000022277 Capuchin DUPLICATION Capuchin MODERN SPECIES 231 ENSCCAG00000017866 ENSCCAG00000018328 GTF3C6 (ENSCCAG00000029714) RPF2 (ENSCCAG00000030864) ENSCCAG00000037609 SLC16A10 (ENSCCAG00000020583) ENSCCAG00000005460 MFSD4B (ENSCCAG00000027584) ENSCCAG00000024842 ENSCCAG00000027786 #15 FAM217A (ENSCCAG00000014228) #16 PRPF4B (ENSCCAG00000001770) #17 PXDC1 (ENSCCAG00000029262) #19 SLC22A23 (ENSCCAG00000019171) #20 PSMG4 (ENSCCAG00000025375) #21 TUBB2B (ENSCCAG00000003095) #22 ENSCCAG00000032435 #22 ENSCCAG00000024163 #23 RIPK1 (ENSCCAG00000030822) #24 ENSCCAG00000036205 NQO2 (ENSCCAG00000032987) #25 SERPINB6 (ENSCCAG00000034114) ##26 SERPINB9 (ENSCCAG00000037402) #27 SERPINB1 (ENSCCAG00000037553) #28 WRNIP1 (ENSCCAG00000030869) #29 MYLK4 (ENSCCAG00000023264) #30 GMDS (ENSCCAG00000021064) #31 ENSCCAG00000034696 FOXF2 (ENSCCAG00000033175) Capuchin MODERN SPECIES 231 ENSCCAG00000018328 GTF3C6 (ENSCCAG00000029714) RPF2 (ENSCCAG00000030864) ENSCCAG00000037609 SLC16A10 (ENSCCAG00000020583) ENSCCAG00000005460 MFSD4B (ENSCCAG00000027584) ENSCCAG00000024842 ENSCCAG00000027786 #15 FAM217A (ENSCCAG00000014228) #16 PRPF4B (ENSCCAG00000001770) #17 PXDC1 (ENSCCAG00000029262) #19 SLC22A23 (ENSCCAG00000019171) #20 PSMG4 (ENSCCAG00000025375) #21 TUBB2B (ENSCCAG00000003095) #22 ENSCCAG00000032435 #22 ENSCCAG00000024163 #23 RIPK1 (ENSCCAG00000030822) #24 ENSCCAG00000036205 NQO2 (ENSCCAG00000032987) #25 SERPINB6 (ENSCCAG00000034114) ##26 SERPINB9 (ENSCCAG00000037402) #27 SERPINB1 (ENSCCAG00000037553) #28 WRNIP1 (ENSCCAG00000030869) #29 MYLK4 (ENSCCAG00000023264) #30 GMDS (ENSCCAG00000021064) #31 ENSCCAG00000034696 FOXF2 (ENSCCAG00000033175) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 638 F13A1 (ENSANAG00000035239) NRN1 (ENSANAG00000026127) #7 FARS2 (ENSANAG00000019047) #8 ENSANAG00000033127 LYRM4 (ENSANAG00000024664) #9 RPP40 (ENSANAG00000029246) #11 CDYL (ENSANAG00000023827) #10 ECI2 (ENSANAG00000028772) #14 ENSANAG00000030717 #15 FAM217A (ENSANAG00000004744) #16 PRPF4B (ENSANAG00000021606) #17 FAM50B (ENSANAG00000031334) #18 ENSANAG00000021015 #19 SLC22A23 (ENSANAG00000023717) #20 PSMG4 (ENSANAG00000032191) #21 TUBB2B (ENSANAG00000036086) #22 TUBB2A (ENSANAG00000030561) #22 ENSANAG00000020303 #23 RIPK1 (ENSANAG00000033311) #24 ENSANAG00000007502 NQO2 (ENSANAG00000033860) #25 Mas night monkey MODERN SPECIES 638 NRN1 (ENSANAG00000026127) #7 FARS2 (ENSANAG00000019047) #8 ENSANAG00000033127 LYRM4 (ENSANAG00000024664) #9 RPP40 (ENSANAG00000029246) #11 CDYL (ENSANAG00000023827) #10 ECI2 (ENSANAG00000028772) #14 ENSANAG00000030717 #15 FAM217A (ENSANAG00000004744) #16 PRPF4B (ENSANAG00000021606) #17 FAM50B (ENSANAG00000031334) #18 ENSANAG00000021015 #19 SLC22A23 (ENSANAG00000023717) #20 PSMG4 (ENSANAG00000032191) #21 TUBB2B (ENSANAG00000036086) #22 TUBB2A (ENSANAG00000030561) #22 ENSANAG00000020303 #23 RIPK1 (ENSANAG00000033311) #24 ENSANAG00000007502 NQO2 (ENSANAG00000033860) #25 Tarsier DUPLICATION Tarsier MODERN SPECIES 6444 PXDC1 (ENSTSYG00000027082) #19 SLC22A23 (ENSTSYG00000000070) #20 PSMG4 (ENSTSYG00000035888) #21 TUBB2B (ENSTSYG00000037166) #22 TUBB2A (ENSTSYG00000012371) #22 BPHL (ENSTSYG00000011270) #23 RIPK1 (ENSTSYG00000011192) #24 NQO2 (ENSTSYG00000003832) #25 SERPINB6 (ENSTSYG00000035626) ##26 SERPINB9 (ENSTSYG00000003659) #27 Tarsier MODERN SPECIES 6444 PXDC1 (ENSTSYG00000027082) #19 SLC22A23 (ENSTSYG00000000070) #20 PSMG4 (ENSTSYG00000035888) #21 TUBB2B (ENSTSYG00000037166) #22 TUBB2A (ENSTSYG00000012371) #22 BPHL (ENSTSYG00000011270) #23 RIPK1 (ENSTSYG00000011192) #24 NQO2 (ENSTSYG00000003832) #25 SERPINB6 (ENSTSYG00000035626) ##26 SERPINB9 (ENSTSYG00000003659) #27 Laurasiatheria DUPLICATION Laurasiatheria DUPLICATION Laurasiatheria ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Hedgehog MODERN SPECIES 3460 ENSEEUG00000002989 #22 ENSEEUG00000002955 #22 BPHL (ENSEEUG00000002899) #23 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Carnivora ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Caniformia ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Caniformia_b ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Ursidae ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Ursus ANCESTRAL SPECIES ENSGT00940000154150.wb.a #22 Polar bear MODERN SPECIES 181 FARS2 (ENSUMAG00000018618) #8 LYRM4 (ENSUMAG00000018628) #9 RPP40 (ENSUMAG00000018639) #11 CDYL (ENSUMAG00000018648) #10 ENSUMAG00000018660 ECI2 (ENSUMAG00000018673) #14 ENSUMAG00000018677 #15 FAM217A (ENSUMAG00000018684) #16 PRPF4B (ENSUMAG00000018696) #17 FAM50B (ENSUMAG00000018705) #18 PXDC1 (ENSUMAG00000018711) #19 SLC22A23 (ENSUMAG00000018716) #20 PSMG4 (ENSUMAG00000018729) #21 ENSUMAG00000018733 #22 ENSUMAG00000018735 #22 ENSUMAG00000018737 #22 BPHL (ENSUMAG00000018741) #23 RIPK1 (ENSUMAG00000018746) #24 NQO2 (ENSUMAG00000018754) #25 ENSUMAG00000018764 #26 SERPINB9 (ENSUMAG00000018772) #27 SERPINB1 (ENSUMAG00000018779) #28 WRNIP1 (ENSUMAG00000018782) #29 MYLK4 (ENSUMAG00000018791) #30 GMDS (ENSUMAG00000018823) #31 ENSUMAG00000018836 ENSUMAG00000018847 EXOC2 (ENSUMAG00000018869) ENSUMAG00000018902 IRF4 (ENSUMAG00000018906) DUSP22 (ENSUMAG00000018924) Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150.xb #22 ENSGT00940000175246 ENSGT00940000154150.wb.b #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 Eulipotyphla ANCESTRAL SPECIES 2278 ENSGT00940000154150.wb.b #22 ENSGT00390000004746 #23 Hedgehog MODERN SPECIES 3460 ENSEEUG00000002989 #22 ENSEEUG00000002955 #22 BPHL (ENSEEUG00000002899) #23 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00940000175246 ENSGT00940000154150.wb.b #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000154150.wb.b #22 Carnivora ANCESTRAL SPECIES ENSGT00940000154150.wb.b #22 Felidae ANCESTRAL SPECIES ENSGT00940000154150.wb.b #22 Panthera ANCESTRAL SPECIES ENSGT00940000154150.wb.b #22 Tiger MODERN SPECIES 15 CAGE1 (ENSPTIG00000019168) SSR1 (ENSPTIG00000006156) LY86 (ENSPTIG00000014095) F13A1 (ENSPTIG00000014413) NRN1 (ENSPTIG00000015277) #7 FARS2 (ENSPTIG00000016684) #8 LYRM4 (ENSPTIG00000018145) #9 RPP40 (ENSPTIG00000018847) #11 CDYL (ENSPTIG00000004597) #10 ECI2 (ENSPTIG00000007246) #14 ENSPTIG00000011297 #15 FAM217A (ENSPTIG00000011724) #16 PRPF4B (ENSPTIG00000013243) #17 PXDC1 (ENSPTIG00000015113) #19 SLC22A23 (ENSPTIG00000015797) #20 TUBB2A (ENSPTIG00000019182) #22 BPHL (ENSPTIG00000019655) #23 RIPK1 (ENSPTIG00000000019) #24 ENSPTIG00000005890 NQO2 (ENSPTIG00000006542) #25 ENSPTIG00000008964 #26 SERPINB9 (ENSPTIG00000011314) #27 SERPINB1 (ENSPTIG00000012609) #28 WRNIP1 (ENSPTIG00000012879) #29 MYLK4 (ENSPTIG00000014895) #30 GMDS (ENSPTIG00000016896) #31 EXOC2 (ENSPTIG00000017629) IRF4 (ENSPTIG00000019685) DUSP22 (ENSPTIG00000020047) Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150.xb #22 ENSGT00940000175246 ENSGT00940000154150.wb.b #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000154150.xb #22 Common shrew MODERN SPECIES 8252 ENSSARG00000003430 #22 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00940000175246 ENSGT00940000154150.wb.b #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.bb.a.b ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Equus ANCESTRAL SPECIES 47 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT01000000214902 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Donkey DUPLICATION Donkey MODERN SPECIES 27 NRN1 (ENSEASG00005031623) #7 FARS2 (ENSEASG00005012111) #8 ENSEASG00005012113 PPP1R3G (ENSEASG00005030057) RPP40 (ENSEASG00005012116) #11 CDYL (ENSEASG00005012117) #10 ENSEASG00005032457 ECI2 (ENSEASG00005012124) #14 ENSEASG00005012126 #15 FAM217A (ENSEASG00005012129) #16 PRPF4B (ENSEASG00005012132) #17 FAM50B (ENSEASG00005012136) #18 ENSEASG00005012139 #19 SLC22A23 (ENSEASG00005012146) #20 PSMG4 (ENSEASG00005012153) #21 TUBB2B (ENSEASG00005032707) #22 ENSEASG00005012165 TUBB2A (ENSEASG00005030900) #22 BPHL (ENSEASG00005012172) #23 RIPK1 (ENSEASG00005012175) #24 NQO2 (ENSEASG00005012177) #25 ENSEASG00005012179 #26 SERPINB9 (ENSEASG00005012183) #27 SERPINB1 (ENSEASG00005012189) #28 WRNIP1 (ENSEASG00005012190) #29 MYLK4 (ENSEASG00005012193) #30 GMDS (ENSEASG00005012197) #31 ENSEASG00005031584 FOXF2 (ENSEASG00005012206) EXOC2 (ENSEASG00005012215) IRF4 (ENSEASG00005012225) Donkey MODERN SPECIES 27 ENSEASG00005012113 PPP1R3G (ENSEASG00005030057) RPP40 (ENSEASG00005012116) #11 CDYL (ENSEASG00005012117) #10 ENSEASG00005032457 ECI2 (ENSEASG00005012124) #14 ENSEASG00005012126 #15 FAM217A (ENSEASG00005012129) #16 PRPF4B (ENSEASG00005012132) #17 FAM50B (ENSEASG00005012136) #18 ENSEASG00005012139 #19 SLC22A23 (ENSEASG00005012146) #20 PSMG4 (ENSEASG00005012153) #21 TUBB2B (ENSEASG00005032707) #22 ENSEASG00005012165 TUBB2A (ENSEASG00005030900) #22 BPHL (ENSEASG00005012172) #23 RIPK1 (ENSEASG00005012175) #24 NQO2 (ENSEASG00005012177) #25 ENSEASG00005012179 #26 SERPINB9 (ENSEASG00005012183) #27 SERPINB1 (ENSEASG00005012189) #28 WRNIP1 (ENSEASG00005012190) #29 MYLK4 (ENSEASG00005012193) #30 GMDS (ENSEASG00005012197) #31 ENSEASG00005031584 FOXF2 (ENSEASG00005012206) EXOC2 (ENSEASG00005012215) IRF4 (ENSEASG00005012225) ENSEASG00005012235 ENSEASG00005027632 Horse DUPLICATION Horse MODERN SPECIES 12 NRN1 (ENSECAG00000007120) #7 FARS2 (ENSECAG00000000279) #8 ENSECAG00000050087 #9 RPP40 (ENSECAG00000017247) #11 CDYL (ENSECAG00000014044) #10 ENSECAG00000046549 ECI2 (ENSECAG00000000313) #14 ENSECAG00000000206 #15 FAM217A (ENSECAG00000000041) #16 PRPF4B (ENSECAG00000014830) #17 ENSECAG00000033231 FAM50B (ENSECAG00000014818) #18 PXDC1 (ENSECAG00000014479) #19 SLC22A23 (ENSECAG00000013821) #20 ENSECAG00000013813 #21 TUBB2B (ENSECAG00000058458) #22 TUBB (ENSECAG00000020234) #22 BPHL (ENSECAG00000013049) #23 RIPK1 (ENSECAG00000010293) #24 NQO2 (ENSECAG00000008386) #25 SERPINB6 (ENSECAG00000015966) #26 SERPINB9 (ENSECAG00000012506) #27 SERPINB1 (ENSECAG00000009896) #28 WRNIP1 (ENSECAG00000008348) #29 MYLK4 (ENSECAG00000006224) #30 ENSECAG00000060133 GMDS (ENSECAG00000001999) #31 FOXC1 (ENSECAG00000029381) FOXQ1 (ENSECAG00000034522) ENSECAG00000046100 EXOC2 (ENSECAG00000000078) Horse MODERN SPECIES 12 FARS2 (ENSECAG00000000279) #8 ENSECAG00000050087 #9 RPP40 (ENSECAG00000017247) #11 CDYL (ENSECAG00000014044) #10 ENSECAG00000046549 ECI2 (ENSECAG00000000313) #14 ENSECAG00000000206 #15 FAM217A (ENSECAG00000000041) #16 PRPF4B (ENSECAG00000014830) #17 ENSECAG00000033231 FAM50B (ENSECAG00000014818) #18 PXDC1 (ENSECAG00000014479) #19 SLC22A23 (ENSECAG00000013821) #20 ENSECAG00000013813 #21 TUBB2B (ENSECAG00000058458) #22 TUBB (ENSECAG00000020234) #22 BPHL (ENSECAG00000013049) #23 RIPK1 (ENSECAG00000010293) #24 NQO2 (ENSECAG00000008386) #25 SERPINB6 (ENSECAG00000015966) #26 SERPINB9 (ENSECAG00000012506) #27 SERPINB1 (ENSECAG00000009896) #28 WRNIP1 (ENSECAG00000008348) #29 MYLK4 (ENSECAG00000006224) #30 ENSECAG00000060133 GMDS (ENSECAG00000001999) #31 FOXC1 (ENSECAG00000029381) FOXQ1 (ENSECAG00000034522) ENSECAG00000046100 EXOC2 (ENSECAG00000000078) IRF4 (ENSECAG00000016808) Chiroptera ANCESTRAL SPECIES 50 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154931 #27 ENSGT00940000154519 #26 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Megabat DUPLICATION Megabat MODERN SPECIES 783 PSMG4 (ENSPVAG00000013677) #21 TUBB2B (ENSPVAG00000013676) #22 Megabat MODERN SPECIES 782 TUBB2A (ENSPVAG00000003354) #22 BPHL (ENSPVAG00000003353) #23 RIPK1 (ENSPVAG00000003352) #24 Microchiroptera ANCESTRAL SPECIES 1 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154573 #28 ENSGT00940000154931 #27 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Greater horseshoe bat MODERN SPECIES 27 FARS2 (ENSRFEG00010000859) #8 LYRM4 (ENSRFEG00010000898) #9 ENSRFEG00010000919 PPP1R3G (ENSRFEG00010000932) RPP40 (ENSRFEG00010000963) #11 CDYL (ENSRFEG00010001012) #10 ECI2 (ENSRFEG00010001054) #14 ENSRFEG00010001108 #15 FAM217A (ENSRFEG00010001133) #16 PRPF4B (ENSRFEG00010001165) #17 ENSRFEG00010001206 FAM50B (ENSRFEG00010001229) #18 PXDC1 (ENSRFEG00010001243) #19 SLC22A23 (ENSRFEG00010001273) #20 PSMG4 (ENSRFEG00010001338) #21 TUBB2B (ENSRFEG00010001382) #22 BPHL (ENSRFEG00010001423) #23 RIPK1 (ENSRFEG00010001467) #24 ENSRFEG00010001506 NQO2 (ENSRFEG00010001518) #25 ENSRFEG00010001556 #27 ENSRFEG00010001648 #27 ENSRFEG00010001710 #26 SERPINB1 (ENSRFEG00010001747) #28 ENSRFEG00010001768 WRNIP1 (ENSRFEG00010001786) #29 MYLK4 (ENSRFEG00010001828) #30 GMDS (ENSRFEG00010001869) #31 NACA2 (ENSRFEG00010001919) ENSRFEG00010001928 ENSRFEG00010001950 Microbat DUPLICATION Microbat MODERN SPECIES 958 ENSMLUG00000025590 PXDC1 (ENSMLUG00000011359) #19 ENSMLUG00000028399 ENSMLUG00000006824 #20 PSMG4 (ENSMLUG00000024906) #21 TUBB2B (ENSMLUG00000006805) #22 ENSMLUG00000016179 #22 BPHL (ENSMLUG00000016171) #23 RIPK1 (ENSMLUG00000016163) #24 NQO2 (ENSMLUG00000000386) #25 ENSMLUG00000008803 #26 ENSMLUG00000016863 #28 ENSMLUG00000016842 #28 ENSMLUG00000016858 #28 ENSMLUG00000016847 #28 ENSMLUG00000016839 #28 WRNIP1 (ENSMLUG00000011209) #29 MYLK4 (ENSMLUG00000011182) #30 ENSMLUG00000003910 GMDS (ENSMLUG00000003934) #31 ENSMLUG00000023644 FOXF2 (ENSMLUG00000030088) Microbat MODERN SPECIES 958 ENSMLUG00000025590 PXDC1 (ENSMLUG00000011359) #19 ENSMLUG00000028399 ENSMLUG00000006824 #20 PSMG4 (ENSMLUG00000024906) #21 TUBB2B (ENSMLUG00000006805) #22 ENSMLUG00000016179 #22 BPHL (ENSMLUG00000016171) #23 RIPK1 (ENSMLUG00000016163) #24 NQO2 (ENSMLUG00000000386) #25 ENSMLUG00000008803 #26 ENSMLUG00000016863 #28 ENSMLUG00000016842 #28 ENSMLUG00000016858 #28 ENSMLUG00000016847 #28 ENSMLUG00000016839 #28 WRNIP1 (ENSMLUG00000011209) #29 MYLK4 (ENSMLUG00000011182) #30 ENSMLUG00000003910 GMDS (ENSMLUG00000003934) #31 ENSMLUG00000023644 Carnivora ANCESTRAL SPECIES 4 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.bb.a.b ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 Caniformia ANCESTRAL SPECIES 3 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.bb.a.b ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 Caniformia_b ANCESTRAL SPECIES 31 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.bb.a.b ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 Ursidae ANCESTRAL SPECIES 39 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b.x #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.b #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 ENSGT00390000010872 Giant Panda DUPLICATION Giant Panda MODERN SPECIES 336 ENSAMEG00000031238 #22 Giant Panda MODERN SPECIES 15 NRN1 (ENSAMEG00000024302) #7 FARS2 (ENSAMEG00000027009) #8 LYRM4 (ENSAMEG00000017445) #9 PPP1R3G (ENSAMEG00000025070) RPP40 (ENSAMEG00000012938) #11 CDYL (ENSAMEG00000012914) #10 ENSAMEG00000012910 ECI2 (ENSAMEG00000012888) #14 ENSAMEG00000012884 #15 FAM217A (ENSAMEG00000012875) #16 PRPF4B (ENSAMEG00000012832) #17 FAM50B (ENSAMEG00000019077) #18 PXDC1 (ENSAMEG00000014456) #19 ENSAMEG00000014434 #20 ENSAMEG00000014430 #21 ENSAMEG00000030040 #22 ENSAMEG00000023499 ENSAMEG00000014416 BPHL (ENSAMEG00000014392) #23 RIPK1 (ENSAMEG00000014389) #24 NQO2 (ENSAMEG00000014373) #25 ENSAMEG00000003548 #26 SERPINB9 (ENSAMEG00000003574) #27 SERPINB1 (ENSAMEG00000003580) #28 WRNIP1 (ENSAMEG00000027067) #29 ENSAMEG00000025653 MYLK4 (ENSAMEG00000010940) #30 GMDS (ENSAMEG00000010935) #31 ENSAMEG00000010931 ENSAMEG00000025085 ENSAMEG00000025252 Ursus ANCESTRAL SPECIES 34 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b.x #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00390000008828 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.b #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00860000135685 ENSGT00390000010872 ENSGT00940000159059 Polar bear DUPLICATION Polar bear MODERN SPECIES 181 F13A1 (ENSUMAG00000018590) NRN1 (ENSUMAG00000018605) #7 FARS2 (ENSUMAG00000018618) #8 LYRM4 (ENSUMAG00000018628) #9 RPP40 (ENSUMAG00000018639) #11 CDYL (ENSUMAG00000018648) #10 ENSUMAG00000018660 ECI2 (ENSUMAG00000018673) #14 ENSUMAG00000018677 #15 FAM217A (ENSUMAG00000018684) #16 PRPF4B (ENSUMAG00000018696) #17 FAM50B (ENSUMAG00000018705) #18 PXDC1 (ENSUMAG00000018711) #19 SLC22A23 (ENSUMAG00000018716) #20 PSMG4 (ENSUMAG00000018729) #21 ENSUMAG00000018733 #22 ENSUMAG00000018735 #22 ENSUMAG00000018737 #22 BPHL (ENSUMAG00000018741) #23 RIPK1 (ENSUMAG00000018746) #24 NQO2 (ENSUMAG00000018754) #25 ENSUMAG00000018764 #26 SERPINB9 (ENSUMAG00000018772) #27 SERPINB1 (ENSUMAG00000018779) #28 WRNIP1 (ENSUMAG00000018782) #29 MYLK4 (ENSUMAG00000018791) #30 GMDS (ENSUMAG00000018823) #31 ENSUMAG00000018836 ENSUMAG00000018847 EXOC2 (ENSUMAG00000018869) ENSUMAG00000018902 Polar bear MODERN SPECIES 181 NRN1 (ENSUMAG00000018605) #7 FARS2 (ENSUMAG00000018618) #8 LYRM4 (ENSUMAG00000018628) #9 RPP40 (ENSUMAG00000018639) #11 CDYL (ENSUMAG00000018648) #10 ENSUMAG00000018660 ECI2 (ENSUMAG00000018673) #14 ENSUMAG00000018677 #15 FAM217A (ENSUMAG00000018684) #16 PRPF4B (ENSUMAG00000018696) #17 FAM50B (ENSUMAG00000018705) #18 PXDC1 (ENSUMAG00000018711) #19 SLC22A23 (ENSUMAG00000018716) #20 PSMG4 (ENSUMAG00000018729) #21 ENSUMAG00000018733 #22 ENSUMAG00000018735 #22 ENSUMAG00000018737 #22 BPHL (ENSUMAG00000018741) #23 RIPK1 (ENSUMAG00000018746) #24 NQO2 (ENSUMAG00000018754) #25 ENSUMAG00000018764 #26 SERPINB9 (ENSUMAG00000018772) #27 SERPINB1 (ENSUMAG00000018779) #28 WRNIP1 (ENSUMAG00000018782) #29 MYLK4 (ENSUMAG00000018791) #30 GMDS (ENSUMAG00000018823) #31 ENSUMAG00000018836 ENSUMAG00000018847 EXOC2 (ENSUMAG00000018869) ENSUMAG00000018902 IRF4 (ENSUMAG00000018906) American black bear DUPLICATION American black bear MODERN SPECIES 1147 SLC22A23 (ENSUAMG00000012637) #20 PSMG4 (ENSUAMG00000012633) #21 TUBB2B (ENSUAMG00000012630) #22 ENSUAMG00000012628 American black bear MODERN SPECIES 6712 ENSUAMG00000015412 #22 BPHL (ENSUAMG00000015404) #23 RIPK1 (ENSUAMG00000015400) #24 Mustelinae ANCESTRAL SPECIES 42 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00390000012138.a.b.t.bb.a.b ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Ferret MODERN SPECIES 202 F13A1 (ENSMPUG00000000546) ENSMPUG00000000541 ENSMPUG00000000540 #7 ENSMPUG00000000537 FARS2 (ENSMPUG00000000534) #8 LYRM4 (ENSMPUG00000000532) #9 RPP40 (ENSMPUG00000000530) #11 CDYL (ENSMPUG00000000521) #10 ECI2 (ENSMPUG00000000515) #14 ENSMPUG00000000507 #15 FAM217A (ENSMPUG00000000502) #16 PRPF4B (ENSMPUG00000000500) #17 FAM50B (ENSMPUG00000000493) #18 PXDC1 (ENSMPUG00000000491) #19 SLC22A23 (ENSMPUG00000000466) #20 TUBB2B (ENSMPUG00000000462) #22 BPHL (ENSMPUG00000000459) #23 RIPK1 (ENSMPUG00000000454) #24 NQO2 (ENSMPUG00000000451) #25 ENSMPUG00000000448 #26 ENSMPUG00000000447 SERPINB9 (ENSMPUG00000000446) #27 SERPINB1 (ENSMPUG00000000421) #28 WRNIP1 (ENSMPUG00000000417) #29 MYLK4 (ENSMPUG00000000408) #30 ENSMPUG00000018450 GMDS (ENSMPUG00000000399) #31 FOXC1 (ENSMPUG00000018449) FOXF2 (ENSMPUG00000000392) FOXQ1 (ENSMPUG00000018966) ENSMPUG00000000390 American mink MODERN SPECIES 158 FAM50B (ENSNVIG00000011720) #18 ENSNVIG00000011710 PXDC1 (ENSNVIG00000011694) #19 SLC22A23 (ENSNVIG00000011656) #20 PSMG4 (ENSNVIG00000011643) #21 TUBB2B (ENSNVIG00000011631) #22 BPHL (ENSNVIG00000011595) #23 RIPK1 (ENSNVIG00000011579) #24 NQO2 (ENSNVIG00000011533) #25 ENSNVIG00000011489 #26 SERPINB9 (ENSNVIG00000011466) #27 ILEU (ENSNVIG00000011445) #28 WRNIP1 (ENSNVIG00000011416) #29 MYLK4 (ENSNVIG00000011396) #30 GMDS (ENSNVIG00000011372) #31 FOXC1 (ENSNVIG00000011358) FOXF2 (ENSNVIG00000011356) ENSNVIG00000011350 ENSNVIG00000011347 #12 EXOC2 (ENSNVIG00000011250) ENSNVIG00000011228 Canidae ANCESTRAL SPECIES 48 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 ENSGT00390000014654 ENSGT00940000163032 Red fox MODERN SPECIES 173 CDYL (ENSVVUG00000018989) #10 ECI2 (ENSVVUG00000019007) #14 ENSVVUG00000019015 #15 FAM217A (ENSVVUG00000019019) #16 PRPF4B (ENSVVUG00000019025) #17 ENSVVUG00000019034 PXDC1 (ENSVVUG00000019041) #19 SLC22A23 (ENSVVUG00000019044) #20 TUBB2B (ENSVVUG00000019054) #22 ENSVVUG00000019059 #23 ENSVVUG00000019060 #23 ENSVVUG00000019068 RIPK1 (ENSVVUG00000019070) #24 NQO2 (ENSVVUG00000019083) #25 ENSVVUG00000019088 #26 SERPINB9 (ENSVVUG00000019101) #27 SERPINB1 (ENSVVUG00000019110) #28 WRNIP1 (ENSVVUG00000019115) #29 MYLK4 (ENSVVUG00000019119) #30 RPLP2 (ENSVVUG00000019125) GMDS (ENSVVUG00000019130) #31 ENSVVUG00000019136 ENSVVUG00000019144 ENSVVUG00000019147 Canis_lupus ANCESTRAL SPECIES 36 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00980000203340 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000003582.q.a.b.a.b.a.b ENSGT01020000230346.C.e.c.b ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00970000193590.b.c.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Dingo MODERN SPECIES 411 LYRM4 (ENSCAFG00020013362) #9 ENSCAFG00020013366 RPP40 (ENSCAFG00020013380) #11 CDYL (ENSCAFG00020013382) #10 ENSCAFG00020013385 ECI2 (ENSCAFG00020013391) #14 ENSCAFG00020013395 #15 FAM217A (ENSCAFG00020013397) #16 PRPF4B (ENSCAFG00020013403) #17 ENSCAFG00020000097 ENSCAFG00020000116 ENSCAFG00020000131 ENSCAFG00020000138 #19 SLC22A23 (ENSCAFG00020000148) #20 ENSCAFG00020000376 #21 TUBB2B (ENSCAFG00020000389) #22 BPHL (ENSCAFG00020000419) #23 RIPK1 (ENSCAFG00020000428) #24 ENSCAFG00020000437 NQO2 (ENSCAFG00020000450) #25 ENSCAFG00020000462 #26 SERPINB9 (ENSCAFG00020000463) #27 SERPINB1 (ENSCAFG00020000473) #28 WRNIP1 (ENSCAFG00020000482) #29 MYLK4 (ENSCAFG00020000493) #30 GMDS (ENSCAFG00020000552) #31 ENSCAFG00020000565 ENSCAFG00020000579 ENSCAFG00020000590 FOXF2 (ENSCAFG00020000598) ENSCAFG00020000606 Dog MODERN SPECIES 28 FARS2 (ENSCAFG00845019317) #8 LYRM4 (ENSCAFG00845019185) #9 ENSCAFG00845019068 RPP40 (ENSCAFG00845018947) #11 CDYL (ENSCAFG00845018889) #10 ENSCAFG00845018833 ECI2 (ENSCAFG00845018709) #14 ENSCAFG00845018634 #15 ENSCAFG00845018572 #16 PRPF4B (ENSCAFG00845018389) #17 ENSCAFG00845018330 ENSCAFG00845018280 ENSCAFG00845018193 #19 SLC22A23 (ENSCAFG00845017898) #20 PSMG4 (ENSCAFG00845017809) #21 TUBB2B (ENSCAFG00845017639) #22 BPHL (ENSCAFG00845017516) #23 ENSCAFG00845017474 RIPK1 (ENSCAFG00845017400) #24 NQO2 (ENSCAFG00845017337) #25 ENSCAFG00845017319 SERPINB6 (ENSCAFG00845017287) #26 SERPINB9 (ENSCAFG00845017203) #27 SERPINB1 (ENSCAFG00845017116) #28 WRNIP1 (ENSCAFG00845016996) #29 MYLK4 (ENSCAFG00845016887) #30 ENSCAFG00845016489 #31 ENSCAFG00845016313 ENSCAFG00845016281 ENSCAFG00845016251 FOXF2 (ENSCAFG00845016185) Felidae ANCESTRAL SPECIES 5 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000009819.a.b.a.a.b.b.b ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00550000074840.z ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Cat MODERN SPECIES 236 NRN1 (ENSFCAG00000030503) #7 FARS2 (ENSFCAG00000014441) #8 ENSFCAG00000051390 LYRM4 (ENSFCAG00000038299) #9 PPP1R3G (ENSFCAG00000041787) RPP40 (ENSFCAG00000009249) #11 CDYL (ENSFCAG00000028494) #10 ECI2 (ENSFCAG00000012171) #14 ENSFCAG00000045175 #15 FAM217A (ENSFCAG00000012169) #16 PRPF4B (ENSFCAG00000030050) #17 FAM50B (ENSFCAG00000028350) #18 PXDC1 (ENSFCAG00000039703) #19 SLC22A23 (ENSFCAG00000025838) #20 PSMG4 (ENSFCAG00000046735) #21 TUBB2B (ENSFCAG00000014626) #22 BPHL (ENSFCAG00000046730) #23 RIPK1 (ENSFCAG00000014625) #24 ENSFCAG00000026193 NQO2 (ENSFCAG00000024592) #25 SERPINB6 (ENSFCAG00000000810) #26 SERPINB9 (ENSFCAG00000000807) #27 SERPINB1 (ENSFCAG00000008689) #28 WRNIP1 (ENSFCAG00000042833) #29 ENSFCAG00000053862 ENSFCAG00000034906 MYLK4 (ENSFCAG00000034770) #30 GMDS (ENSFCAG00000004783) #31 FOXC1 (ENSFCAG00000043380) FOXF2 (ENSFCAG00000005901) FOXQ1 (ENSFCAG00000036417) Panthera ANCESTRAL SPECIES 30 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000009819.a.b.a.b ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00550000074840.z ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Panthera_a ANCESTRAL SPECIES 32 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a ENSGT00940000154150.xb #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00390000009819.a.b.a.b ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT01000000215059 ENSGT00550000074840.z ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b lion DUPLICATION lion MODERN SPECIES 28 F13A1 (ENSPLOG00000019314) NRN1 (ENSPLOG00000019270) #7 FARS2 (ENSPLOG00000019222) #8 LYRM4 (ENSPLOG00000019169) #9 ENSPLOG00000019120 RPP40 (ENSPLOG00000019021) #11 CDYL (ENSPLOG00000018938) #10 ECI2 (ENSPLOG00000018858) #14 ENSPLOG00000018809 #15 FAM217A (ENSPLOG00000018759) #16 PRPF4B (ENSPLOG00000018709) #17 FAM50B (ENSPLOG00000018680) #18 PXDC1 (ENSPLOG00000018629) #19 SLC22A23 (ENSPLOG00000018579) #20 ENSPLOG00000018533 TUBB2B (ENSPLOG00000018497) #22 ENSPLOG00000018446 #22 BPHL (ENSPLOG00000018383) #23 RIPK1 (ENSPLOG00000018363) #24 ENSPLOG00000018333 NQO2 (ENSPLOG00000018239) #25 SERPINB9 (ENSPLOG00000018094) #27 SERPINB1 (ENSPLOG00000018010) #28 WRNIP1 (ENSPLOG00000017949) #29 ENSPLOG00000017919 ENSPLOG00000017887 MYLK4 (ENSPLOG00000017722) #30 GMDS (ENSPLOG00000017599) #31 ENSPLOG00000017561 FOXF2 (ENSPLOG00000017522) FOXQ1 (ENSPLOG00000017508) lion MODERN SPECIES 28 NRN1 (ENSPLOG00000019270) #7 FARS2 (ENSPLOG00000019222) #8 LYRM4 (ENSPLOG00000019169) #9 ENSPLOG00000019120 RPP40 (ENSPLOG00000019021) #11 CDYL (ENSPLOG00000018938) #10 ECI2 (ENSPLOG00000018858) #14 ENSPLOG00000018809 #15 FAM217A (ENSPLOG00000018759) #16 PRPF4B (ENSPLOG00000018709) #17 FAM50B (ENSPLOG00000018680) #18 PXDC1 (ENSPLOG00000018629) #19 SLC22A23 (ENSPLOG00000018579) #20 ENSPLOG00000018533 TUBB2B (ENSPLOG00000018497) #22 ENSPLOG00000018446 #22 BPHL (ENSPLOG00000018383) #23 RIPK1 (ENSPLOG00000018363) #24 ENSPLOG00000018333 NQO2 (ENSPLOG00000018239) #25 SERPINB9 (ENSPLOG00000018094) #27 SERPINB1 (ENSPLOG00000018010) #28 WRNIP1 (ENSPLOG00000017949) #29 ENSPLOG00000017919 ENSPLOG00000017887 MYLK4 (ENSPLOG00000017722) #30 GMDS (ENSPLOG00000017599) #31 ENSPLOG00000017561 FOXF2 (ENSPLOG00000017522) FOXQ1 (ENSPLOG00000017508) ENSPLOG00000017393 leopard DUPLICATION leopard MODERN SPECIES 79 ENSPPRG00000006505 FARS2 (ENSPPRG00000006027) #8 LYRM4 (ENSPPRG00000005664) #9 PPP1R3G (ENSPPRG00000015138) RPP40 (ENSPPRG00000005612) #11 CDYL (ENSPPRG00000004629) #10 ENSPPRG00000003975 ECI2 (ENSPPRG00000003341) #14 ENSPPRG00000002615 #15 FAM217A (ENSPPRG00000002142) #16 PRPF4B (ENSPPRG00000001709) #17 PXDC1 (ENSPPRG00000001339) #19 SLC22A23 (ENSPPRG00000000705) #20 PSMG4 (ENSPPRG00000022994) #21 ENSPPRG00000023661 TUBB2B (ENSPPRG00000023755) #22 TUBB2A (ENSPPRG00000023932) #22 BPHL (ENSPPRG00000023975) #23 RIPK1 (ENSPPRG00000024036) #24 ENSPPRG00000024159 NQO2 (ENSPPRG00000024196) #25 ENSPPRG00000024624 #26 SERPINB9 (ENSPPRG00000020115) #27 SERPINB1 (ENSPPRG00000019499) #28 WRNIP1 (ENSPPRG00000018070) #29 ENSPPRG00000015212 MYLK4 (ENSPPRG00000014341) #30 GMDS (ENSPPRG00000011992) #31 FOXC1 (ENSPPRG00000014362) FOXF2 (ENSPPRG00000011053) FOXQ1 (ENSPPRG00000014349) leopard MODERN SPECIES 79 FARS2 (ENSPPRG00000006027) #8 LYRM4 (ENSPPRG00000005664) #9 PPP1R3G (ENSPPRG00000015138) RPP40 (ENSPPRG00000005612) #11 CDYL (ENSPPRG00000004629) #10 ENSPPRG00000003975 ECI2 (ENSPPRG00000003341) #14 ENSPPRG00000002615 #15 FAM217A (ENSPPRG00000002142) #16 PRPF4B (ENSPPRG00000001709) #17 PXDC1 (ENSPPRG00000001339) #19 SLC22A23 (ENSPPRG00000000705) #20 PSMG4 (ENSPPRG00000022994) #21 ENSPPRG00000023661 TUBB2B (ENSPPRG00000023755) #22 TUBB2A (ENSPPRG00000023932) #22 BPHL (ENSPPRG00000023975) #23 RIPK1 (ENSPPRG00000024036) #24 ENSPPRG00000024159 NQO2 (ENSPPRG00000024196) #25 ENSPPRG00000024624 #26 SERPINB9 (ENSPPRG00000020115) #27 SERPINB1 (ENSPPRG00000019499) #28 WRNIP1 (ENSPPRG00000018070) #29 ENSPPRG00000015212 MYLK4 (ENSPPRG00000014341) #30 GMDS (ENSPPRG00000011992) #31 FOXC1 (ENSPPRG00000014362) FOXF2 (ENSPPRG00000011053) FOXQ1 (ENSPPRG00000014349) EXOC2 (ENSPPRG00000010340) Artiodactyla DUPLICATION Artiodactyla DUPLICATION Artiodactyla ANCESTRAL SPECIES 15 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.s.a #22 ENSGT00940000167417.a ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b Artiodactyla_a ANCESTRAL SPECIES 27 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 ENSGT00940000159059 Pecora ANCESTRAL SPECIES 32 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 ENSGT00940000159059 Percora_a ANCESTRAL SPECIES 12 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.f.a.b.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 Bovidae ANCESTRAL SPECIES 13 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.f.a.b.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 Bovinae ANCESTRAL SPECIES ENSGT00940000154150.xb.s.a #22 American bison MODERN SPECIES 2738 ENSBBBG00000001144 #14 ENSBBBG00000001114 #15 FAM217A (ENSBBBG00000001094) #16 PRPF4B (ENSBBBG00000001052) #17 ENSBBBG00000000979 #20 ENSBBBG00000000939 #21 ENSBBBG00000000913 #22 Bos ANCESTRAL SPECIES ENSGT00940000154150.xb.s.a #22 Bos_a ANCESTRAL SPECIES ENSGT00940000154150.xb.s.a #22 Wild yak MODERN SPECIES 2027 ENSBMUG00000009912 #20 ENSBMUG00000009939 #22 ENSBMUG00000009950 #22 ENSBMUG00000009966 #22 BPHL (ENSBMUG00000009972) #23 RIPK1 (ENSBMUG00000009980) #24 NQO2 (ENSBMUG00000010004) #25 ENSBMUG00000010067 #26 Camelidae ANCESTRAL SPECIES ENSGT00940000154150.xb.s.a #22 Alpaca MODERN SPECIES 2132 ENSVPAG00000001566 #22 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.s.a #22 ENSGT00940000167417.a ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Suina ANCESTRAL SPECIES 8 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a.b ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 Pig MODERN SPECIES 15 LY86 (ENSSSCG00000032355) F13A1 (ENSSSCG00000024310) NRN1 (ENSSSCG00000026211) #7 FARS2 (ENSSSCG00000038717) #8 LYRM4 (ENSSSCG00000031269) #9 PPP1R3G (ENSSSCG00000000997) RPP40 (ENSSSCG00000000998) #11 CDYL (ENSSSCG00000000999) #10 ECI2 (ENSSSCG00000001000) #14 ENSSSCG00000001001 #15 PRPF4B (ENSSSCG00000001002) #17 FAM50B (ENSSSCG00000026323) #18 PXDC1 (ENSSSCG00000025582) #19 SLC22A23 (ENSSSCG00000001004) #20 ENSSSCG00000036988 TUBB2B (ENSSSCG00000033655) #22 TUBB2A (ENSSSCG00000062050) #22 BPHL (ENSSSCG00000001008) #23 RIPK1 (ENSSSCG00000001009) #24 NQO2 (ENSSSCG00000020758) #25 ENSSSCG00000038404 #26 SERPINB9 (ENSSSCG00000031615) #27 SERPINB1 (ENSSSCG00000001011) #28 WRNIP1 (ENSSSCG00000001010) #29 ENSSSCG00000028777 #30 FOXC1 (ENSSSCG00000039756) GMDS (ENSSSCG00000000994) #31 FOXF2 (ENSSSCG00000037195) FOXQ1 (ENSSSCG00000000991) ENSSSCG00000059227 ENSSSCG00000041494 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Pecora ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Percora_a ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Bovidae ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Bovinae ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Bos ANCESTRAL SPECIES ENSGT00940000154150.xb.s.b #22 Bos_a ANCESTRAL SPECIES 49 ENSGT00950000185466 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000154502.o.b ENSGT00940000163747 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.e.b.b.b.a #26 ENSGT00940000154519.e.b.b.a.c #26 ENSGT00940000154519.e.a.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Wild yak MODERN SPECIES 2027 ENSBMUG00000009912 #20 ENSBMUG00000009939 #22 ENSBMUG00000009950 #22 ENSBMUG00000009966 #22 BPHL (ENSBMUG00000009972) #23 RIPK1 (ENSBMUG00000009980) #24 NQO2 (ENSBMUG00000010004) #25 ENSBMUG00000010067 #26 Artiodactyla ANCESTRAL SPECIES 15 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.s.a #22 ENSGT00940000167417.a ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 Artiodactyla_a ANCESTRAL SPECIES 27 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Camelidae ANCESTRAL SPECIES 54 ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00910000147105 ENSGT00440000033640 #31 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Arabian camel MODERN SPECIES 12 LY86 (ENSCDRG00005009098) F13A1 (ENSCDRG00005009013) ENSCDRG00005008875 #7 FARS2 (ENSCDRG00005008824) #8 LYRM4 (ENSCDRG00005016295) #9 RPP40 (ENSCDRG00005015971) #11 CDYL (ENSCDRG00005015913) #10 ENSCDRG00005015881 ECI2 (ENSCDRG00005015840) #14 ENSCDRG00005015800 #15 FAM217A (ENSCDRG00005015744) #16 PRPF4B (ENSCDRG00005015684) #17 PXDC1 (ENSCDRG00005015617) #19 SLC22A23 (ENSCDRG00005015543) #20 ENSCDRG00005015514 #21 TUBB2B (ENSCDRG00005015474) #22 BPHL (ENSCDRG00005015385) #23 RIPK1 (ENSCDRG00005015351) #24 NQO2 (ENSCDRG00005015309) #25 ENSCDRG00005015210 #26 SERPINB9 (ENSCDRG00005015109) #27 SERPINB1 (ENSCDRG00005015041) #28 WRNIP1 (ENSCDRG00005014977) #29 MYLK4 (ENSCDRG00005014815) #30 ENSCDRG00005014762 GMDS (ENSCDRG00005014630) #31 EXOC2 (ENSCDRG00005013918) IRF4 (ENSCDRG00005013862) ENSCDRG00005013769 Artiodactyla_b ANCESTRAL SPECIES 15 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 Cetacea ANCESTRAL SPECIES 7 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.u #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.c #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT01000000221719 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Blue whale MODERN SPECIES 2 F13A1 (ENSBMSG00010007558) NRN1 (ENSBMSG00010007552) #7 FARS2 (ENSBMSG00010007535) #8 LYRM4 (ENSBMSG00010007512) #9 PPP1R3G (ENSBMSG00010007505) RPP40 (ENSBMSG00010007489) #11 CDYL (ENSBMSG00010007473) #10 ECI2 (ENSBMSG00010007466) #14 ENSBMSG00010007461 ENSBMSG00010007453 #15 FAM217A (ENSBMSG00010007442) #16 PRPF4B (ENSBMSG00010007428) #17 PXDC1 (ENSBMSG00010007412) #19 SLC22A23 (ENSBMSG00010007297) #20 PSMG4 (ENSBMSG00010007269) #21 TUBB2A (ENSBMSG00010007239) #22 BPHL (ENSBMSG00010007209) #23 RIPK1 (ENSBMSG00010007199) #24 NQO2 (ENSBMSG00010007187) #25 ENSBMSG00010007165 #26 SERPINB9 (ENSBMSG00010007151) #27 SERPINB1 (ENSBMSG00010007136) #28 WRNIP1 (ENSBMSG00010007123) #29 MYLK4 (ENSBMSG00010007088) #30 ENSBMSG00010007069 GMDS (ENSBMSG00010007043) #31 FOXC1 (ENSBMSG00010007030) FOXF2 (ENSBMSG00010007027) FOXQ1 (ENSBMSG00010007017) EXOC2 (ENSBMSG00010006978) IRF4 (ENSBMSG00010006934) Odontoceti ANCESTRAL SPECIES 5 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.u #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.c #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT01000000221719 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 Sperm whale DUPLICATION Sperm whale MODERN SPECIES 9 LY86 (ENSPCTG00005008221) F13A1 (ENSPCTG00005008252) NRN1 (ENSPCTG00005008319) #7 ENSPCTG00005008355 FARS2 (ENSPCTG00005008380) #8 LYRM4 (ENSPCTG00005008407) #9 PPP1R3G (ENSPCTG00005008426) RPP40 (ENSPCTG00005008452) #11 ENSPCTG00005008550 #10 ECI2 (ENSPCTG00005008598) #14 ENSPCTG00005008657 #15 FAM217A (ENSPCTG00005008731) #16 PRPF4B (ENSPCTG00005008801) #17 PXDC1 (ENSPCTG00005008936) #19 TUBB2A (ENSPCTG00005008977) #22 TUBB2A (ENSPCTG00005009021) #22 BPHL (ENSPCTG00005009057) #23 RIPK1 (ENSPCTG00005009207) #24 NQO2 (ENSPCTG00005009321) #25 ENSPCTG00005009401 #26 SERPINB9 (ENSPCTG00005009506) #27 ENSPCTG00005009581 #28 WRNIP1 (ENSPCTG00005009615) #29 MYLK4 (ENSPCTG00005009809) #30 ENSPCTG00005010105 GMDS (ENSPCTG00005010205) #31 ENSPCTG00005010376 FOXF2 (ENSPCTG00005010432) EXOC2 (ENSPCTG00005010489) IRF4 (ENSPCTG00005010577) DUSP22 (ENSPCTG00005010689) Sperm whale MODERN SPECIES 9 DSP (ENSPCTG00005007793) LY86 (ENSPCTG00005008221) F13A1 (ENSPCTG00005008252) NRN1 (ENSPCTG00005008319) #7 ENSPCTG00005008355 FARS2 (ENSPCTG00005008380) #8 LYRM4 (ENSPCTG00005008407) #9 PPP1R3G (ENSPCTG00005008426) RPP40 (ENSPCTG00005008452) #11 ENSPCTG00005008550 #10 ECI2 (ENSPCTG00005008598) #14 ENSPCTG00005008657 #15 FAM217A (ENSPCTG00005008731) #16 PRPF4B (ENSPCTG00005008801) #17 PXDC1 (ENSPCTG00005008936) #19 TUBB2A (ENSPCTG00005008977) #22 TUBB2A (ENSPCTG00005009021) #22 BPHL (ENSPCTG00005009057) #23 RIPK1 (ENSPCTG00005009207) #24 NQO2 (ENSPCTG00005009321) #25 ENSPCTG00005009401 #26 SERPINB9 (ENSPCTG00005009506) #27 ENSPCTG00005009581 #28 WRNIP1 (ENSPCTG00005009615) #29 MYLK4 (ENSPCTG00005009809) #30 ENSPCTG00005010105 GMDS (ENSPCTG00005010205) #31 ENSPCTG00005010376 FOXF2 (ENSPCTG00005010432) EXOC2 (ENSPCTG00005010489) IRF4 (ENSPCTG00005010577) Odontoceti_a ANCESTRAL SPECIES 5 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.u.a #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.c #26 ENSGT00940000154573.u #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT01000000221719 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.u.a #10 ENSGT00940000155105 #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.c #26 ENSGT00940000154573.u #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT01000000221719 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Monodontidae ANCESTRAL SPECIES 4 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106.u.a #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.c #26 ENSGT00390000008538 #29 ENSGT01010000230145 ENSGT00940000156211.b #30 ENSGT01000000221719 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Narwhal MODERN SPECIES 310 RREB1 (ENSMMNG00015010935) LY86 (ENSMMNG00015010924) F13A1 (ENSMMNG00015010895) NRN1 (ENSMMNG00015010879) #7 ENSMMNG00015010864 FARS2 (ENSMMNG00015010823) #8 ENSMMNG00015010792 #9 PPP1R3G (ENSMMNG00015010783) RPP40 (ENSMMNG00015010735) #11 ENSMMNG00015010684 #10 ECI2 (ENSMMNG00015010653) #14 PRPF4B (ENSMMNG00015010640) #17 PXDC1 (ENSMMNG00015010618) #19 SLC22A23 (ENSMMNG00015010564) #20 PSMG4 (ENSMMNG00015010506) #21 TUBB2B (ENSMMNG00015010464) #22 BPHL (ENSMMNG00015010397) #23 RIPK1 (ENSMMNG00015010383) #24 NQO2 (ENSMMNG00015010357) #25 ENSMMNG00015010309 #26 WRNIP1 (ENSMMNG00015010266) #29 ENSMMNG00015010243 MYLK4 (ENSMMNG00015010218) #30 ENSMMNG00015010189 GMDS (ENSMMNG00015014105) #31 FOXC1 (ENSMMNG00015014093) FOXF2 (ENSMMNG00015014085) EXOC2 (ENSMMNG00015014030) IRF4 (ENSMMNG00015014004) DUSP22 (ENSMMNG00015013987) VAMP7 (ENSMMNG00015013948) Beluga whale MODERN SPECIES 10 RREB1 (ENSDLEG00000001663) LY86 (ENSDLEG00000001638) F13A1 (ENSDLEG00000001613) NRN1 (ENSDLEG00000001599) #7 FARS2 (ENSDLEG00000001576) #8 ENSDLEG00000001554 LYRM4 (ENSDLEG00000001535) #9 PPP1R3G (ENSDLEG00000001526) RPP40 (ENSDLEG00000001512) #11 ENSDLEG00000001490 #10 ECI2 (ENSDLEG00000001462) #14 PRPF4B (ENSDLEG00000001431) #17 ENSDLEG00000001426 #19 SLC22A23 (ENSDLEG00000001395) #20 PSMG4 (ENSDLEG00000001383) #21 TUBB2A (ENSDLEG00000001358) #22 BPHL (ENSDLEG00000001285) #23 RIPK1 (ENSDLEG00000001254) #24 NQO2 (ENSDLEG00000001236) #25 ENSDLEG00000001211 #26 WRNIP1 (ENSDLEG00000001184) #29 ENSDLEG00000001175 ENSDLEG00000001169 GMDS (ENSDLEG00000001155) #31 FOXC1 (ENSDLEG00000001148) FOXF2 (ENSDLEG00000001139) ENSDLEG00000001130 EXOC2 (ENSDLEG00000000911) IRF4 (ENSDLEG00000000806) ENSDLEG00000000793 ENSDLEG00000000776 Vaquita MODERN SPECIES 2 RREB1 (ENSPSNG00000014036) LY86 (ENSPSNG00000014090) F13A1 (ENSPSNG00000014208) NRN1 (ENSPSNG00000014328) #7 FARS2 (ENSPSNG00000014384) #8 LYRM4 (ENSPSNG00000014436) #9 PPP1R3G (ENSPSNG00000014484) RPP40 (ENSPSNG00000014549) #11 ENSPSNG00000014779 #10 ECI2 (ENSPSNG00000014875) #14 FAM217A (ENSPSNG00000014949) #16 PRPF4B (ENSPSNG00000015086) #17 PXDC1 (ENSPSNG00000015171) #19 SLC22A23 (ENSPSNG00000015233) #20 PSMG4 (ENSPSNG00000015357) #21 TUBB2A (ENSPSNG00000015438) #22 BPHL (ENSPSNG00000015565) #23 RIPK1 (ENSPSNG00000015681) #24 NQO2 (ENSPSNG00000015747) #25 ENSPSNG00000015836 #26 SERPINB1 (ENSPSNG00000015980) #28 WRNIP1 (ENSPSNG00000016040) #29 MYLK4 (ENSPSNG00000016111) #30 ENSPSNG00000016357 GMDS (ENSPSNG00000016429) #31 ENSPSNG00000016521 FOXF2 (ENSPSNG00000016588) FOXQ1 (ENSPSNG00000016632) EXOC2 (ENSPSNG00000016671) IRF4 (ENSPSNG00000016722) DUSP22 (ENSPSNG00000016848) Dolphin DUPLICATION Dolphin MODERN SPECIES 161 PSMG4 (ENSTTRG00000006146) #21 TUBB2B (ENSTTRG00000006144) #22 ENSTTRG00000006142 #22 BPHL (ENSTTRG00000006140) #23 ENSTTRG00000006137 #24 NQO2 (ENSTTRG00000006128) #25 Dolphin MODERN SPECIES 161 PSMG4 (ENSTTRG00000006146) #21 TUBB2B (ENSTTRG00000006144) #22 ENSTTRG00000006142 #22 BPHL (ENSTTRG00000006140) #23 ENSTTRG00000006137 #24 NQO2 (ENSTTRG00000006128) #25 Pecora ANCESTRAL SPECIES 32 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 Yarkand deer MODERN SPECIES 30 LY86 (ENSCHYG00000001035) F13A1 (ENSCHYG00000001064) NRN1 (ENSCHYG00000001106) #7 FARS2 (ENSCHYG00000001148) #8 ENSCHYG00000001244 #9 PPP1R3G (ENSCHYG00000001273) RPP40 (ENSCHYG00000001289) #11 CDYL (ENSCHYG00000001347) #10 ECI2 (ENSCHYG00000001423) #14 ENSCHYG00000001482 #15 FAM217A (ENSCHYG00000001494) #16 PRPF4B (ENSCHYG00000001509) #17 SLC22A23 (ENSCHYG00000001566) #20 PSMG4 (ENSCHYG00000001621) #21 ENSCHYG00000001640 TUBB2B (ENSCHYG00000001657) #22 BPHL (ENSCHYG00000001696) #23 RIPK1 (ENSCHYG00000001750) #24 DUSP22 (ENSCHYG00000001773) IRF4 (ENSCHYG00000001815) EXOC2 (ENSCHYG00000001849) FOXF2 (ENSCHYG00000001915) GMDS (ENSCHYG00000001942) #31 WRNIP1 (ENSCHYG00000001991) #29 SERPINB1 (ENSCHYG00000002011) #28 SERPINB9 (ENSCHYG00000002035) #27 Percora_a ANCESTRAL SPECIES 12 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.f.a.b.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Siberian musk deer MODERN SPECIES 96 NRN1 (ENSMMSG00000019951) #7 FARS2 (ENSMMSG00000019967) #8 ENSMMSG00000019992 ENSMMSG00000020008 ENSMMSG00000020020 #9 PPP1R3G (ENSMMSG00000020040) RPP40 (ENSMMSG00000020056) #11 CDYL (ENSMMSG00000020126) #10 ECI2 (ENSMMSG00000020168) #14 ENSMMSG00000020286 #15 FAM217A (ENSMMSG00000000080) #16 PRPF4B (ENSMMSG00000000148) #17 PXDC1 (ENSMMSG00000000205) #19 SLC22A23 (ENSMMSG00000000252) #20 PSMG4 (ENSMMSG00000000373) #21 TUBB2B (ENSMMSG00000000409) #22 BPHL (ENSMMSG00000000460) #23 RIPK1 (ENSMMSG00000000490) #24 NQO2 (ENSMMSG00000000521) #25 ENSMMSG00000000568 #26 ENSMMSG00000000678 #26 ENSMMSG00000001423 #26 ENSMMSG00000001460 #26 ENSMMSG00000001478 #26 ENSMMSG00000001505 #26 SERPINB9 (ENSMMSG00000001536) #27 SERPINB1 (ENSMMSG00000001564) #28 WRNIP1 (ENSMMSG00000001591) #29 MYLK4 (ENSMMSG00000001649) #30 GMDS (ENSMMSG00000001775) #31 FOXC1 (ENSMMSG00000001806) Bovidae ANCESTRAL SPECIES 13 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00940000154150.xb.s.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.f.a.b.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Bovinae ANCESTRAL SPECIES 9 ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.e.b.b.a #26 ENSGT00940000154519.e.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 Bos ANCESTRAL SPECIES 37 ENSGT00950000185466 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000154502.o.b ENSGT00940000163747 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.e.b.b.b.a #26 ENSGT00940000154519.e.b.b.a.c #26 ENSGT00940000154519.e.a.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Bos_a ANCESTRAL SPECIES 49 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000154502.o.b ENSGT00940000163747 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.e.b.b.b.a #26 ENSGT00940000154519.e.b.b.a.c #26 ENSGT00940000154519.e.a.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b Domestic yak MODERN SPECIES 16 ENSBGRG00000007376 ENSBGRG00000007447 #9 SDCBP (ENSBGRG00000007518) PPP1R3G (ENSBGRG00000007602) ENSBGRG00000007618 RPP40 (ENSBGRG00000007644) #11 CDYL (ENSBGRG00000007875) #10 ECI2 (ENSBGRG00000007960) #14 ENSBGRG00000008092 #15 FAM217A (ENSBGRG00000008153) #16 PRPF4B (ENSBGRG00000008304) #17 PXDC1 (ENSBGRG00000008589) #19 ENSBGRG00000008631 SLC22A23 (ENSBGRG00000008663) #20 ENSBGRG00000008779 #21 TUBB2A (ENSBGRG00000008862) #22 BPHL (ENSBGRG00000008956) #23 RIPK1 (ENSBGRG00000009042) #24 NQO2 (ENSBGRG00000009131) #25 ENSBGRG00000009235 #26 ENSBGRG00000009283 #26 ENSBGRG00000009409 #26 ENSBGRG00000010125 #26 SERPINB9 (ENSBGRG00000010171) #27 SERPINB1 (ENSBGRG00000010205) #28 WRNIP1 (ENSBGRG00000010299) #29 MYLK4 (ENSBGRG00000010518) #30 GMDS (ENSBGRG00000011025) #31 FOXC1 (ENSBGRG00000011734) FOXF2 (ENSBGRG00000011788) ENSBGRG00000011879 Wild yak MODERN SPECIES 2027 ENSBMUG00000009912 #20 ENSBMUG00000009939 #22 ENSBMUG00000009950 #22 ENSBMUG00000009966 #22 BPHL (ENSBMUG00000009972) #23 RIPK1 (ENSBMUG00000009980) #24 NQO2 (ENSBMUG00000010004) #25 ENSBMUG00000010067 #26 Bos_b ANCESTRAL SPECIES 8 ENSGT00950000185466 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000154502.o.b ENSGT00940000163747 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.e.b.b.b.a #26 ENSGT00940000154519.e.b.b.a.c #26 ENSGT00940000154519.e.a.a #26 ENSGT00940000154519.e.a.b #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Cow DUPLICATION Cow MODERN SPECIES 15 ENSBTAG00000049778 FARS2 (ENSBTAG00000018072) #8 LYRM4 (ENSBTAG00000031432) #9 ENSBTAG00000018309 PPP1R3G (ENSBTAG00000054777) ENSBTAG00000051366 RPP40 (ENSBTAG00000003332) #11 CDYL (ENSBTAG00000016397) #10 ECI2 (ENSBTAG00000015178) #14 ENSBTAG00000015176 #15 FAM217A (ENSBTAG00000002089) #16 PRPF4B (ENSBTAG00000002086) #17 PXDC1 (ENSBTAG00000026919) #19 SLC22A23 (ENSBTAG00000010943) #20 PSMG4 (ENSBTAG00000031249) #21 TUBB2B (ENSBTAG00000054330) #22 TUBB2A (ENSBTAG00000048485) #22 BPHL (ENSBTAG00000006379) #23 RIPK1 (ENSBTAG00000006378) #24 ENSBTAG00000051842 NQO2 (ENSBTAG00000000786) #25 ENSBTAG00000049906 #26 ENSBTAG00000053741 #26 ENSBTAG00000054098 #26 SERPINB6 (ENSBTAG00000050155) #26 ENSBTAG00000053511 #26 SERPINB9 (ENSBTAG00000031267) #27 SERPINB1 (ENSBTAG00000011975) #28 WRNIP1 (ENSBTAG00000006166) #29 MYLK4 (ENSBTAG00000012079) #30 GMDS (ENSBTAG00000012058) #31 Cow MODERN SPECIES 15 FARS2 (ENSBTAG00000018072) #8 LYRM4 (ENSBTAG00000031432) #9 ENSBTAG00000018309 PPP1R3G (ENSBTAG00000054777) ENSBTAG00000051366 RPP40 (ENSBTAG00000003332) #11 CDYL (ENSBTAG00000016397) #10 ECI2 (ENSBTAG00000015178) #14 ENSBTAG00000015176 #15 FAM217A (ENSBTAG00000002089) #16 PRPF4B (ENSBTAG00000002086) #17 PXDC1 (ENSBTAG00000026919) #19 SLC22A23 (ENSBTAG00000010943) #20 PSMG4 (ENSBTAG00000031249) #21 TUBB2B (ENSBTAG00000054330) #22 TUBB2A (ENSBTAG00000048485) #22 BPHL (ENSBTAG00000006379) #23 RIPK1 (ENSBTAG00000006378) #24 ENSBTAG00000051842 NQO2 (ENSBTAG00000000786) #25 ENSBTAG00000049906 #26 ENSBTAG00000053741 #26 ENSBTAG00000054098 #26 SERPINB6 (ENSBTAG00000050155) #26 ENSBTAG00000053511 #26 SERPINB9 (ENSBTAG00000031267) #27 SERPINB1 (ENSBTAG00000011975) #28 WRNIP1 (ENSBTAG00000006166) #29 MYLK4 (ENSBTAG00000012079) #30 GMDS (ENSBTAG00000012058) #31 ENSBTAG00000050875 Hybrid Bos Indicus DUPLICATION Hybrid Bos Indicus MODERN SPECIES 15 LYRM4 (ENSBIXG00005026120) #9 ENSBIXG00005006186 PPP1R3G (ENSBIXG00005026071) ENSBIXG00005026061 RPP40 (ENSBIXG00005026040) #11 CDYL (ENSBIXG00005004428) #10 ENSBIXG00005007197 ENSBIXG00005025934 ECI2 (ENSBIXG00005025904) #14 ENSBIXG00005025813 #15 FAM217A (ENSBIXG00005025792) #16 PRPF4B (ENSBIXG00005025750) #17 PXDC1 (ENSBIXG00005025631) #19 SLC22A23 (ENSBIXG00005004357) #20 PSMG4 (ENSBIXG00005025413) #21 TUBB2A (ENSBIXG00005025393) #22 ENSBIXG00005025336 #22 BPHL (ENSBIXG00005025316) #23 RIPK1 (ENSBIXG00005004294) #24 ENSBIXG00005025217 NQO2 (ENSBIXG00005025196) #25 ENSBIXG00005025063 #26 ENSBIXG00005024949 ENSBIXG00005024919 #26 SERPINB9 (ENSBIXG00005024704) #27 SERPINB1 (ENSBIXG00005024645) #28 WRNIP1 (ENSBIXG00005006680) #29 MYLK4 (ENSBIXG00005024549) #30 GMDS (ENSBIXG00005024373) #31 FOXF2 (ENSBIXG00005024208) FOXQ1 (ENSBIXG00005024190) Hybrid Bos Indicus MODERN SPECIES 15 ENSBIXG00005006186 PPP1R3G (ENSBIXG00005026071) ENSBIXG00005026061 RPP40 (ENSBIXG00005026040) #11 CDYL (ENSBIXG00005004428) #10 ENSBIXG00005007197 ENSBIXG00005025934 ECI2 (ENSBIXG00005025904) #14 ENSBIXG00005025813 #15 FAM217A (ENSBIXG00005025792) #16 PRPF4B (ENSBIXG00005025750) #17 PXDC1 (ENSBIXG00005025631) #19 SLC22A23 (ENSBIXG00005004357) #20 PSMG4 (ENSBIXG00005025413) #21 TUBB2A (ENSBIXG00005025393) #22 ENSBIXG00005025336 #22 BPHL (ENSBIXG00005025316) #23 RIPK1 (ENSBIXG00005004294) #24 ENSBIXG00005025217 NQO2 (ENSBIXG00005025196) #25 ENSBIXG00005025063 #26 ENSBIXG00005024949 ENSBIXG00005024919 #26 SERPINB9 (ENSBIXG00005024704) #27 SERPINB1 (ENSBIXG00005024645) #28 WRNIP1 (ENSBIXG00005006680) #29 MYLK4 (ENSBIXG00005024549) #30 GMDS (ENSBIXG00005024373) #31 FOXF2 (ENSBIXG00005024208) FOXQ1 (ENSBIXG00005024190) EXOC2 (ENSBIXG00005002582) Caprinae ANCESTRAL SPECIES 41 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.xb.t #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.e.b.a #26 ENSGT00940000154519.f.a.a.a.b #26 ENSGT00940000154931 #27 ENSGT00940000154519.f.a.a.a.a.a #26 ENSGT00940000154519.f.a.b.a #26 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 12 RREB1 (ENSOARG00020025006) LY86 (ENSOARG00020025014) F13A1 (ENSOARG00020025035) NRN1 (ENSOARG00020025044) #7 FARS2 (ENSOARG00020025055) #8 LYRM4 (ENSOARG00020025075) #9 PPP1R3G (ENSOARG00020025083) RPP40 (ENSOARG00020025115) #11 CDYL (ENSOARG00020025174) #10 ENSOARG00020025197 #15 PRPF4B (ENSOARG00020025239) #17 ENSOARG00020025307 #19 SLC22A23 (ENSOARG00020006359) #20 TUBB2A (ENSOARG00020006431) #22 PSMG4 (ENSOARG00020006491) #21 TUBB2B (ENSOARG00020006539) #22 ENSOARG00020006586 RIPK1 (ENSOARG00020006661) #23 RIPK1 (ENSOARG00020006711) #24 ENSOARG00020006784 #25 ENSOARG00020006863 #26 ENSOARG00020007031 #26 ENSOARG00020008292 ENSOARG00020008345 #26 ENSOARG00020008440 #26 SERPINB9 (ENSOARG00020008599) #27 ENSOARG00020008634 #26 SERPINB1 (ENSOARG00020008679) #28 WRNIP1 (ENSOARG00020008718) #29 ENSOARG00020008839 #30 ENSOARG00020009120 Rambouillet Sheep MODERN SPECIES 12 SSR1 (ENSOARG00020024975) ENSOARG00020024996 RREB1 (ENSOARG00020025006) LY86 (ENSOARG00020025014) F13A1 (ENSOARG00020025035) NRN1 (ENSOARG00020025044) #7 FARS2 (ENSOARG00020025055) #8 LYRM4 (ENSOARG00020025075) #9 PPP1R3G (ENSOARG00020025083) RPP40 (ENSOARG00020025115) #11 CDYL (ENSOARG00020025174) #10 ENSOARG00020025197 #15 PRPF4B (ENSOARG00020025239) #17 ENSOARG00020025307 #19 SLC22A23 (ENSOARG00020006359) #20 TUBB2A (ENSOARG00020006431) #22 PSMG4 (ENSOARG00020006491) #21 TUBB2B (ENSOARG00020006539) #22 ENSOARG00020006586 RIPK1 (ENSOARG00020006661) #23 RIPK1 (ENSOARG00020006711) #24 ENSOARG00020006784 #25 ENSOARG00020006863 #26 ENSOARG00020007031 #26 ENSOARG00020008292 ENSOARG00020008345 #26 ENSOARG00020008440 #26 SERPINB9 (ENSOARG00020008599) #27 ENSOARG00020008634 #26 SERPINB1 (ENSOARG00020008679) #28 WRNIP1 (ENSOARG00020008718) #29 Goat DUPLICATION Goat MODERN SPECIES 15 NRN1 (ENSCHIG00000023169) #7 ENSCHIG00000017222 FARS2 (ENSCHIG00000017678) #8 LYRM4 (ENSCHIG00000010740) #9 PPP1R3G (ENSCHIG00000017990) ENSCHIG00000022246 RPP40 (ENSCHIG00000016849) #11 CDYL (ENSCHIG00000021846) #10 ECI2 (ENSCHIG00000016201) #14 ENSCHIG00000021666 #15 ENSCHIG00000023235 #16 PRPF4B (ENSCHIG00000014208) #17 PXDC1 (ENSCHIG00000025104) #19 SLC22A23 (ENSCHIG00000013035) #20 PSMG4 (ENSCHIG00000018602) #21 TUBB2B (ENSCHIG00000021272) #22 TUBB2A (ENSCHIG00000025595) #22 BPHL (ENSCHIG00000018519) #23 RIPK1 (ENSCHIG00000026577) #24 NQO2 (ENSCHIG00000014702) #25 ENSCHIG00000020501 #26 ENSCHIG00000014090 #26 ENSCHIG00000013116 #26 HDGFL1 (ENSCHIG00000011655) ENSCHIG00000010444 ENSCHIG00000017218 SOX4 (ENSCHIG00000013419) CDKAL1 (ENSCHIG00000022647) ENSCHIG00000022931 ENSCHIG00000010662 MBOAT1 (ENSCHIG00000009573) Goat MODERN SPECIES 15 ENSCHIG00000017222 FARS2 (ENSCHIG00000017678) #8 LYRM4 (ENSCHIG00000010740) #9 PPP1R3G (ENSCHIG00000017990) ENSCHIG00000022246 RPP40 (ENSCHIG00000016849) #11 CDYL (ENSCHIG00000021846) #10 ECI2 (ENSCHIG00000016201) #14 ENSCHIG00000021666 #15 ENSCHIG00000023235 #16 PRPF4B (ENSCHIG00000014208) #17 PXDC1 (ENSCHIG00000025104) #19 SLC22A23 (ENSCHIG00000013035) #20 PSMG4 (ENSCHIG00000018602) #21 TUBB2B (ENSCHIG00000021272) #22 TUBB2A (ENSCHIG00000025595) #22 BPHL (ENSCHIG00000018519) #23 RIPK1 (ENSCHIG00000026577) #24 NQO2 (ENSCHIG00000014702) #25 ENSCHIG00000020501 #26 ENSCHIG00000014090 #26 ENSCHIG00000013116 #26 HDGFL1 (ENSCHIG00000011655) ENSCHIG00000010444 ENSCHIG00000017218 SOX4 (ENSCHIG00000013419) CDKAL1 (ENSCHIG00000022647) ENSCHIG00000022931 ENSCHIG00000010662 MBOAT1 (ENSCHIG00000009573) ID4 (ENSCHIG00000020094) Suina ANCESTRAL SPECIES 8 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417.a.b ENSGT00940000154150.xb.s.b #22 ENSGT00940000154150.xb.t #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519 #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT01070000257212 ENSGT00390000010872 ENSGT00940000159059 Pig MODERN SPECIES 15 F13A1 (ENSSSCG00000024310) NRN1 (ENSSSCG00000026211) #7 FARS2 (ENSSSCG00000038717) #8 LYRM4 (ENSSSCG00000031269) #9 PPP1R3G (ENSSSCG00000000997) RPP40 (ENSSSCG00000000998) #11 CDYL (ENSSSCG00000000999) #10 ECI2 (ENSSSCG00000001000) #14 ENSSSCG00000001001 #15 PRPF4B (ENSSSCG00000001002) #17 FAM50B (ENSSSCG00000026323) #18 PXDC1 (ENSSSCG00000025582) #19 SLC22A23 (ENSSSCG00000001004) #20 ENSSSCG00000036988 TUBB2B (ENSSSCG00000033655) #22 TUBB2A (ENSSSCG00000062050) #22 BPHL (ENSSSCG00000001008) #23 RIPK1 (ENSSSCG00000001009) #24 NQO2 (ENSSSCG00000020758) #25 ENSSSCG00000038404 #26 SERPINB9 (ENSSSCG00000031615) #27 SERPINB1 (ENSSSCG00000001011) #28 WRNIP1 (ENSSSCG00000001010) #29 ENSSSCG00000028777 #30 FOXC1 (ENSSSCG00000039756) GMDS (ENSSSCG00000000994) #31 FOXF2 (ENSSSCG00000037195) FOXQ1 (ENSSSCG00000000991) ENSSSCG00000059227 ENSSSCG00000041494 EXOC2 (ENSSSCG00000000985) Chacoan peccary DUPLICATION Chacoan peccary MODERN SPECIES 780 ENSCWAG00000009446 #22 TUBB2A (ENSCWAG00000010033) #22 BPHL (ENSCWAG00000010053) #23 RIPK1 (ENSCWAG00000010115) #24 NQO2 (ENSCWAG00000010221) #25 ENSCWAG00000010295 #26 SERPINB9 (ENSCWAG00000010349) #27 SERPINB1 (ENSCWAG00000010393) #28 WRNIP1 (ENSCWAG00000010435) #29 MYLK4 (ENSCWAG00000010554) #30 GMDS (ENSCWAG00000010697) #31 Chacoan peccary MODERN SPECIES 780 ENSCWAG00000009446 #22 TUBB2A (ENSCWAG00000010033) #22 BPHL (ENSCWAG00000010053) #23 RIPK1 (ENSCWAG00000010115) #24 NQO2 (ENSCWAG00000010221) #25 ENSCWAG00000010295 #26 SERPINB9 (ENSCWAG00000010349) #27 SERPINB1 (ENSCWAG00000010393) #28 WRNIP1 (ENSCWAG00000010435) #29 MYLK4 (ENSCWAG00000010554) #30 GMDS (ENSCWAG00000010697) #31 Atlantogenata ANCESTRAL SPECIES 86 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000168960 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.j #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Xenarthra ANCESTRAL SPECIES 531 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000174583 ENSGT00940000156563 #25 ENSGT00940000154519.j #26 ENSGT00940000154931.h #27 Armadillo DUPLICATION Armadillo MODERN SPECIES 2012 ENSDNOG00000041366 #22 Armadillo MODERN SPECIES 4572 CD200 (ENSDNOG00000004455) ENSDNOG00000035110 SLC9C1 (ENSDNOG00000006265) ENSDNOG00000011769 C3orf52 (ENSDNOG00000032086) TAGLN3 (ENSDNOG00000046524) ABHD10 (ENSDNOG00000044065) PHLDB2 (ENSDNOG00000013616) PLCXD2 (ENSDNOG00000025935) SLC22A23 (ENSDNOG00000030775) #20 PSMG4 (ENSDNOG00000010146) #21 ENSDNOG00000006449 #22 ENSDNOG00000010566 #22 BPHL (ENSDNOG00000004617) #23 ENSDNOG00000030682 NQO2 (ENSDNOG00000031821) #25 ENSDNOG00000048294 #26 ENSDNOG00000004180 #27 Armadillo MODERN SPECIES 4572 CD200 (ENSDNOG00000004455) ENSDNOG00000035110 SLC9C1 (ENSDNOG00000006265) ENSDNOG00000011769 C3orf52 (ENSDNOG00000032086) TAGLN3 (ENSDNOG00000046524) ABHD10 (ENSDNOG00000044065) PHLDB2 (ENSDNOG00000013616) PLCXD2 (ENSDNOG00000025935) SLC22A23 (ENSDNOG00000030775) #20 PSMG4 (ENSDNOG00000010146) #21 ENSDNOG00000006449 #22 ENSDNOG00000010566 #22 BPHL (ENSDNOG00000004617) #23 ENSDNOG00000030682 NQO2 (ENSDNOG00000031821) #25 ENSDNOG00000048294 #26 ENSDNOG00000004180 #27 Afrotheria ANCESTRAL SPECIES 94 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000168960 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167514 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.i.a.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Tenrec MODERN SPECIES 3324 TUBB2A (ENSETEG00000006085) #22 Afrotheria_a ANCESTRAL SPECIES 96 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000168960 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000004735.B #18 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167514 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000154519.i.a.a #26 ENSGT00940000154931 #27 ENSGT00940000154573 #28 ENSGT00390000008538 #29 ENSGT00940000156211.b #30 ENSGT00440000033640 #31 ENSGT00940000162303.b ENSGT00940000162527 ENSGT00940000162937.b ENSGT00390000010872 ENSGT00940000159059 ENSGT00940000157153 Hyrax MODERN SPECIES 2720 ENSPCAG00000002925 #22 Elephant DUPLICATION Elephant DUPLICATION Elephant MODERN SPECIES 447 NRN1 (ENSLAFG00000012437) #7 FARS2 (ENSLAFG00000007104) #8 LYRM4 (ENSLAFG00000020549) #9 PPP1R3G (ENSLAFG00000031926) RPP40 (ENSLAFG00000007530) #11 CDYL (ENSLAFG00000018419) #10 ECI2 (ENSLAFG00000000020) #14 ENSLAFG00000027067 FAM217A (ENSLAFG00000022708) #16 ENSLAFG00000027337 PRPF4B (ENSLAFG00000004109) #17 FAM50B (ENSLAFG00000006170) #18 PXDC1 (ENSLAFG00000018619) #19 SLC22A23 (ENSLAFG00000012205) #20 ENSLAFG00000032203 ENSLAFG00000027462 #22 ENSLAFG00000031279 #22 ENSLAFG00000010068 #22 BPHL (ENSLAFG00000010064) #23 RIPK1 (ENSLAFG00000010059) #24 NQO2 (ENSLAFG00000031167) #25 ENSLAFG00000011947 #26 SERPINB9 (ENSLAFG00000007487) #27 SERPINB1 (ENSLAFG00000006794) #28 WRNIP1 (ENSLAFG00000014603) #29 MYLK4 (ENSLAFG00000014597) #30 GMDS (ENSLAFG00000012336) #31 ENSLAFG00000029094 FOXC1 (ENSLAFG00000028626) FOXF2 (ENSLAFG00000002074) FOXQ1 (ENSLAFG00000000082) Elephant MODERN SPECIES 447 LYRM4 (ENSLAFG00000020549) #9 PPP1R3G (ENSLAFG00000031926) RPP40 (ENSLAFG00000007530) #11 CDYL (ENSLAFG00000018419) #10 ECI2 (ENSLAFG00000000020) #14 ENSLAFG00000027067 FAM217A (ENSLAFG00000022708) #16 ENSLAFG00000027337 PRPF4B (ENSLAFG00000004109) #17 FAM50B (ENSLAFG00000006170) #18 PXDC1 (ENSLAFG00000018619) #19 SLC22A23 (ENSLAFG00000012205) #20 ENSLAFG00000032203 ENSLAFG00000027462 #22 ENSLAFG00000031279 #22 ENSLAFG00000010068 #22 BPHL (ENSLAFG00000010064) #23 RIPK1 (ENSLAFG00000010059) #24 NQO2 (ENSLAFG00000031167) #25 ENSLAFG00000011947 #26 SERPINB9 (ENSLAFG00000007487) #27 SERPINB1 (ENSLAFG00000006794) #28 WRNIP1 (ENSLAFG00000014603) #29 MYLK4 (ENSLAFG00000014597) #30 GMDS (ENSLAFG00000012336) #31 ENSLAFG00000029094 FOXC1 (ENSLAFG00000028626) FOXF2 (ENSLAFG00000002074) FOXQ1 (ENSLAFG00000000082) ENSLAFG00000030668 EXOC2 (ENSLAFG00000012946) Elephant MODERN SPECIES 447 FARS2 (ENSLAFG00000007104) #8 LYRM4 (ENSLAFG00000020549) #9 PPP1R3G (ENSLAFG00000031926) RPP40 (ENSLAFG00000007530) #11 CDYL (ENSLAFG00000018419) #10 ECI2 (ENSLAFG00000000020) #14 ENSLAFG00000027067 FAM217A (ENSLAFG00000022708) #16 ENSLAFG00000027337 PRPF4B (ENSLAFG00000004109) #17 FAM50B (ENSLAFG00000006170) #18 PXDC1 (ENSLAFG00000018619) #19 SLC22A23 (ENSLAFG00000012205) #20 ENSLAFG00000032203 ENSLAFG00000027462 #22 ENSLAFG00000031279 #22 ENSLAFG00000010068 #22 BPHL (ENSLAFG00000010064) #23 RIPK1 (ENSLAFG00000010059) #24 NQO2 (ENSLAFG00000031167) #25 ENSLAFG00000011947 #26 SERPINB9 (ENSLAFG00000007487) #27 SERPINB1 (ENSLAFG00000006794) #28 WRNIP1 (ENSLAFG00000014603) #29 MYLK4 (ENSLAFG00000014597) #30 GMDS (ENSLAFG00000012336) #31 ENSLAFG00000029094 FOXC1 (ENSLAFG00000028626) FOXF2 (ENSLAFG00000002074) FOXQ1 (ENSLAFG00000000082) ENSLAFG00000030668 Marsupialia ANCESTRAL SPECIES 1 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563.f #25 ENSGT00940000156563.e #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000162917 ENSGT00390000002200.a.b Opossum MODERN SPECIES 2 ENSMODG00000042097 #7 FARS2 (ENSMODG00000009839) #8 ENSMODG00000042735 #9 ENSMODG00000049736 RPP40 (ENSMODG00000009826) #11 ENSMODG00000009804 #10 ENSMODG00000027364 ECI2 (ENSMODG00000009786) #14 ENSMODG00000036689 #15 FAM217A (ENSMODG00000009773) #16 ENSMODG00000009756 #17 ENSMODG00000028179 PXDC1 (ENSMODG00000008942) #19 SLC22A23 (ENSMODG00000008782) #20 PSMG4 (ENSMODG00000038283) #21 TUBB2A (ENSMODG00000024592) #22 BPHL (ENSMODG00000008512) #23 RIPK1 (ENSMODG00000008505) #24 ENSMODG00000008493 #25 ENSMODG00000046608 #25 DUSP22 (ENSMODG00000050834) IRF4 (ENSMODG00000008383) EXOC2 (ENSMODG00000008367) ENSMODG00000008316 FOXF2 (ENSMODG00000008307) ENSMODG00000008294 ENSMODG00000024590 GMDS (ENSMODG00000008260) #31 ENSMODG00000028941 #30 WRNIP1 (ENSMODG00000008193) #29 ENSMODG00000047146 Marsupialia_b ANCESTRAL SPECIES 2 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563.f #25 ENSGT00940000157153.u ENSGT00940000156563.e #25 ENSGT00940000157153.v.b ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000162917 Diprotodontia ANCESTRAL SPECIES 1 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563.f #25 ENSGT00940000157153.u ENSGT00940000156563.e #25 ENSGT00940000157153.v.b ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000162917 Wallaby DUPLICATION Wallaby MODERN SPECIES 11194 TUBB2B (ENSMEUG00000012226) #22 Wallaby MODERN SPECIES 4396 TUBB2A (ENSMEUG00000003738) #22 ENSMEUG00000003729 #23 Diprotodontia_a ANCESTRAL SPECIES ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563.f #25 ENSGT00940000157153.u ENSGT00940000156563.e #25 ENSGT00940000157153.v.b ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00530000063786.a.p koala MODERN SPECIES 296 SLC22A23 (ENSPCIG00000000903) #20 ENSPCIG00000000888 TUBB2B (ENSPCIG00000022050) #22 BPHL (ENSPCIG00000022052) #23 RIPK1 (ENSPCIG00000022064) #24 ENSPCIG00000012249 #25 ENSPCIG00000022067 #25 DUSP22 (ENSPCIG00000037144) IRF4 (ENSPCIG00000022070) EXOC2 (ENSPCIG00000022073) FOXQ1 (ENSPCIG00000007926) FOXF2 (ENSPCIG00000011639) FOXC1 (ENSPCIG00000035615) Common wonbat MODERN SPECIES 34 FARS2 (ENSVURG00010004338) #8 LYRM4 (ENSVURG00010004361) #9 ENSVURG00010004367 RPP40 (ENSVURG00010004377) #11 ENSVURG00010004414 #10 ENSVURG00010004422 ENSVURG00010004427 ENSVURG00010004444 ECI2 (ENSVURG00010004465) #14 FAM217A (ENSVURG00010004476) #16 PRPF4B (ENSVURG00010004483) #17 ENSVURG00010004506 PXDC1 (ENSVURG00010004534) #19 SLC22A23 (ENSVURG00010004586) #20 PSMG4 (ENSVURG00010004617) #21 TUBB2A (ENSVURG00010004658) #22 BPHL (ENSVURG00010004675) #23 RIPK1 (ENSVURG00010004694) #24 ENSVURG00010004709 #25 ENSVURG00010004723 IRF4 (ENSVURG00010004732) EXOC2 (ENSVURG00010004782) FOXF2 (ENSVURG00010004836) FOXC1 (ENSVURG00010004905) GMDS (ENSVURG00010004946) #31 ENSVURG00010004983 MYLK4 (ENSVURG00010005033) #30 WRNIP1 (ENSVURG00010005089) #29 ENSVURG00010005123 ENSVURG00010005129 PSKH2 (ENSVURG00010005146) Tasmanian devil DUPLICATION Tasmanian devil MODERN SPECIES NRN1 (ENSSHAG00000020937) #7 FARS2 (ENSSHAG00000026087) #8 PPP1R3G (ENSSHAG00000025505) ENSSHAG00000007760 RPP40 (ENSSHAG00000002102) #11 ENSSHAG00000008802 #10 ECI2 (ENSSHAG00000031929) #14 ENSSHAG00000006576 #15 ENSSHAG00000007175 #16 PRPF4B (ENSSHAG00000007603) #17 ENSSHAG00000028945 PXDC1 (ENSSHAG00000009869) #19 ENSSHAG00000029443 SLC22A23 (ENSSHAG00000023393) #20 PSMG4 (ENSSHAG00000030196) #21 TUBB2B (ENSSHAG00000007892) #22 TUBB2A (ENSSHAG00000021520) #22 BPHL (ENSSHAG00000014312) #23 RIPK1 (ENSSHAG00000014446) #24 ENSSHAG00000014609 #25 ENSSHAG00000015165 ENSSHAG00000022026 #25 IRF4 (ENSSHAG00000015592) EXOC2 (ENSSHAG00000001430) FOXQ1 (ENSSHAG00000012341) FOXF2 (ENSSHAG00000012720) FOXC1 (ENSSHAG00000023841) GMDS (ENSSHAG00000031057) #31 MYLK4 (ENSSHAG00000026920) #30 ENSSHAG00000014703 #29 ENSSHAG00000025112 Tasmanian devil MODERN SPECIES FARS2 (ENSSHAG00000026087) #8 PPP1R3G (ENSSHAG00000025505) ENSSHAG00000007760 RPP40 (ENSSHAG00000002102) #11 ENSSHAG00000008802 #10 ECI2 (ENSSHAG00000031929) #14 ENSSHAG00000006576 #15 ENSSHAG00000007175 #16 PRPF4B (ENSSHAG00000007603) #17 ENSSHAG00000028945 PXDC1 (ENSSHAG00000009869) #19 ENSSHAG00000029443 SLC22A23 (ENSSHAG00000023393) #20 PSMG4 (ENSSHAG00000030196) #21 TUBB2B (ENSSHAG00000007892) #22 TUBB2A (ENSSHAG00000021520) #22 BPHL (ENSSHAG00000014312) #23 RIPK1 (ENSSHAG00000014446) #24 ENSSHAG00000014609 #25 ENSSHAG00000015165 ENSSHAG00000022026 #25 IRF4 (ENSSHAG00000015592) EXOC2 (ENSSHAG00000001430) FOXQ1 (ENSSHAG00000012341) FOXF2 (ENSSHAG00000012720) FOXC1 (ENSSHAG00000023841) GMDS (ENSSHAG00000031057) #31 MYLK4 (ENSSHAG00000026920) #30 ENSSHAG00000014703 #29 ENSSHAG00000025112 ENSSHAG00000031754 Platypus DUPLICATION Platypus MODERN SPECIES 23 ENSOANG00000037725 SSR1Y (ENSOANG00000048793) ENSOANG00000048797 ENSOANG00000041525 #10 ENSOANG00000014951 #17 ENSOANG00000014953 #20 ENSOANG00000031691 #21 TUBB2B (ENSOANG00000047005) #22 ENSOANG00000036177 #23 ENSOANG00000039611 ENSOANG00000040013 #24 ENSOANG00000041660 #25 ENSOANG00000044106 ENSOANG00000050518 ENSOANG00000042886 ENSOANG00000039862 ENSOANG00000036916 Platypus MODERN SPECIES 86 ENSOANG00000032215 ENSOANG00000031552 F13A1 (ENSOANG00000045613) NRN1 (ENSOANG00000039068) #7 FARS2 (ENSOANG00000001199) #8 ENSOANG00000050753 #9 RPP40 (ENSOANG00000001200) #11 ENSOANG00000001201 #10 ECI2 (ENSOANG00000043493) #14 ENSOANG00000047145 #15 ENSOANG00000050718 #17 ENSOANG00000028882 PXDC1 (ENSOANG00000050046) #19 ENSOANG00000044215 #20 ENSOANG00000040291 #21 ENSOANG00000004797 #22 ENSOANG00000014956 #23 ENSOANG00000014957 #24 ENSOANG00000014959 #25 ENSOANG00000014901 ENSOANG00000006326 ENSOANG00000006327 ENSOANG00000041195 ENSOANG00000041907 GMDS (ENSOANG00000029425) #31 ENSOANG00000044472 ##30 WRNIP1 (ENSOANG00000015739) #29 ENSOANG00000015740 DROSHA (ENSOANG00000015744) CDH6 (ENSOANG00000015746) CDH9 (ENSOANG00000002505) Sauria ANCESTRAL SPECIES ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C Archelosauria ANCESTRAL SPECIES 5 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915 Cryptodira ANCESTRAL SPECIES 7 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915 Testudinoidea ANCESTRAL SPECIES ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.p.a ENSGT00940000165915 Emydidae ANCESTRAL SPECIES ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.p.a ENSGT00940000165915 ENSGT00940000161205 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 2589 ENSTMTG00000009713 #22 Three-toed box turtle MODERN SPECIES 2610 ENSTMTG00000010082 #22 painted turtle DUPLICATION painted turtle MODERN SPECIES 2427 ENSCPBG00000008989 ENSCPBG00000008999 PPP1R3G (ENSCPBG00000009001) RPP40 (ENSCPBG00000009003) #11 ENSCPBG00000009008 #10 ECI2 (ENSCPBG00000009023) #14 FAM217A (ENSCPBG00000009034) #16 ENSCPBG00000009043 #17 ENSCPBG00000009044 ENSCPBG00000009048 PXDC1 (ENSCPBG00000009051) #19 ENSCPBG00000009054 SLC22A23 (ENSCPBG00000009061) #20 PSMG4 (ENSCPBG00000009067) #21 ENSCPBG00000009070 #22 ENSCPBG00000009079 #22 BPHL (ENSCPBG00000009096) #23 RIPK1 (ENSCPBG00000009112) #24 IRF4 (ENSCPBG00000009145) EXOC2 (ENSCPBG00000009169) FOXQ1 (ENSCPBG00000009662) FOXF2 (ENSCPBG00000009665) FOXC1 (ENSCPBG00000009668) GMDS (ENSCPBG00000009672) #31 MYLK4 (ENSCPBG00000009690) #30 WRNIP1 (ENSCPBG00000009703) #29 SERPINB1 (ENSCPBG00000009708) #28 ENSCPBG00000009713 ENSCPBG00000009720 ENSCPBG00000009765 ENSCPBG00000010925 painted turtle MODERN SPECIES 2427 FARS2 (ENSCPBG00000008751) #8 ENSCPBG00000008989 ENSCPBG00000008999 PPP1R3G (ENSCPBG00000009001) RPP40 (ENSCPBG00000009003) #11 ENSCPBG00000009008 #10 ECI2 (ENSCPBG00000009023) #14 FAM217A (ENSCPBG00000009034) #16 ENSCPBG00000009043 #17 ENSCPBG00000009044 ENSCPBG00000009048 PXDC1 (ENSCPBG00000009051) #19 ENSCPBG00000009054 SLC22A23 (ENSCPBG00000009061) #20 PSMG4 (ENSCPBG00000009067) #21 ENSCPBG00000009070 #22 ENSCPBG00000009079 #22 BPHL (ENSCPBG00000009096) #23 RIPK1 (ENSCPBG00000009112) #24 IRF4 (ENSCPBG00000009145) EXOC2 (ENSCPBG00000009169) FOXQ1 (ENSCPBG00000009662) FOXF2 (ENSCPBG00000009665) FOXC1 (ENSCPBG00000009668) GMDS (ENSCPBG00000009672) #31 MYLK4 (ENSCPBG00000009690) #30 WRNIP1 (ENSCPBG00000009703) #29 SERPINB1 (ENSCPBG00000009708) #28 ENSCPBG00000009713 ENSCPBG00000009720 ENSCPBG00000009765 Testudinidae DUPLICATION Testudinidae DUPLICATION Testudinidae ANCESTRAL SPECIES 4 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.n #22 ENSGT00940000154150.m.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162527 ENSGT00940000162303.b ENSGT00940000174615 ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.p.a ENSGT00940000165915 Goode s thornscrub tortoise MODERN SPECIES 11 NRN1 (ENSGEVG00005000507) #7 FARS2 (ENSGEVG00005000493) #8 ENSGEVG00005000479 LYRM4 (ENSGEVG00005000460) #9 PPP1R3G (ENSGEVG00005000436) RPP40 (ENSGEVG00005000417) #11 ENSGEVG00005000394 #10 ECI2 (ENSGEVG00005000363) #14 FAM217A (ENSGEVG00005000347) #16 PRPF4B (ENSGEVG00005000196) #17 ENSGEVG00005000106 PXDC1 (ENSGEVG00005000084) #19 SLC22A23 (ENSGEVG00005000069) #20 PSMG4 (ENSGEVG00005000058) #21 ENSGEVG00005000037 #22 ENSGEVG00005006301 #22 BPHL (ENSGEVG00005006271) #23 RIPK1 (ENSGEVG00005006245) #24 NQO2 (ENSGEVG00005006223) #25 ENSGEVG00005006207 DUSP22 (ENSGEVG00005006150) IRF4 (ENSGEVG00005006121) EXOC2 (ENSGEVG00005006088) FOXF2 (ENSGEVG00005006060) FOXC1 (ENSGEVG00005006039) ENSGEVG00005006016 GMDS (ENSGEVG00005005964) #31 MYLK4 (ENSGEVG00005005851) #30 WRNIP1 (ENSGEVG00005005814) #29 SERPINB1 (ENSGEVG00005005167) #28 ENSGEVG00005004941 Abingdon island giant tortoise MODERN SPECIES 2039 ECI2 (ENSCABG00000020580) #14 FAM217A (ENSCABG00000020579) #16 PRPF4B (ENSCABG00000020578) #17 PXDC1 (ENSCABG00000020577) #19 SLC22A23 (ENSCABG00000020576) #20 PSMG4 (ENSCABG00000020575) #21 ENSCABG00000020574 TUBB2A (ENSCABG00000020573) #22 ENSCABG00000020572 #22 BPHL (ENSCABG00000020571) #23 ENSCABG00000020569 RIPK1 (ENSCABG00000020568) #24 NQO2 (ENSCABG00000020567) #25 DUSP22 (ENSCABG00000020565) IRF4 (ENSCABG00000020564) EXOC2 (ENSCABG00000020305) FOXF2 (ENSCABG00000020267) Testudinidae ANCESTRAL SPECIES ENSGT00940000154150.m.b #22 Goode s thornscrub tortoise MODERN SPECIES 11 F13A1 (ENSGEVG00005000527) NRN1 (ENSGEVG00005000507) #7 FARS2 (ENSGEVG00005000493) #8 ENSGEVG00005000479 LYRM4 (ENSGEVG00005000460) #9 PPP1R3G (ENSGEVG00005000436) RPP40 (ENSGEVG00005000417) #11 ENSGEVG00005000394 #10 ECI2 (ENSGEVG00005000363) #14 FAM217A (ENSGEVG00005000347) #16 PRPF4B (ENSGEVG00005000196) #17 ENSGEVG00005000106 PXDC1 (ENSGEVG00005000084) #19 SLC22A23 (ENSGEVG00005000069) #20 PSMG4 (ENSGEVG00005000058) #21 ENSGEVG00005000037 #22 ENSGEVG00005006301 #22 BPHL (ENSGEVG00005006271) #23 RIPK1 (ENSGEVG00005006245) #24 NQO2 (ENSGEVG00005006223) #25 ENSGEVG00005006207 DUSP22 (ENSGEVG00005006150) IRF4 (ENSGEVG00005006121) EXOC2 (ENSGEVG00005006088) FOXF2 (ENSGEVG00005006060) FOXC1 (ENSGEVG00005006039) ENSGEVG00005006016 GMDS (ENSGEVG00005005964) #31 MYLK4 (ENSGEVG00005005851) #30 WRNIP1 (ENSGEVG00005005814) #29 SERPINB1 (ENSGEVG00005005167) #28 Testudinidae ANCESTRAL SPECIES 4 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150.n #22 ENSGT00940000154150.m.a #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162527 ENSGT00940000162303.b ENSGT00940000174615 ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.p.a Abingdon island giant tortoise MODERN SPECIES 2039 ECI2 (ENSCABG00000020580) #14 FAM217A (ENSCABG00000020579) #16 PRPF4B (ENSCABG00000020578) #17 PXDC1 (ENSCABG00000020577) #19 SLC22A23 (ENSCABG00000020576) #20 PSMG4 (ENSCABG00000020575) #21 ENSCABG00000020574 TUBB2A (ENSCABG00000020573) #22 ENSCABG00000020572 #22 BPHL (ENSCABG00000020571) #23 ENSCABG00000020569 RIPK1 (ENSCABG00000020568) #24 NQO2 (ENSCABG00000020567) #25 DUSP22 (ENSCABG00000020565) IRF4 (ENSCABG00000020564) EXOC2 (ENSCABG00000020305) FOXF2 (ENSCABG00000020267) Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 2232 ENSPSIG00000000639 LY86 (ENSPSIG00000007069) F13A1 (ENSPSIG00000007111) NRN1 (ENSPSIG00000007743) #7 FARS2 (ENSPSIG00000007752) #8 ENSPSIG00000000655 RPP40 (ENSPSIG00000007854) #11 ENSPSIG00000007881 #10 ECI2 (ENSPSIG00000008142) #14 FAM217A (ENSPSIG00000008371) #16 PRPF4B (ENSPSIG00000008502) #17 SLC22A23 (ENSPSIG00000009072) #20 PXDC1 (ENSPSIG00000009675) #19 PSMG4 (ENSPSIG00000009729) #21 TUBB2B (ENSPSIG00000010016) #22 ENSPSIG00000010210 #22 BPHL (ENSPSIG00000010301) #23 RIPK1 (ENSPSIG00000010708) #24 NQO2 (ENSPSIG00000011276) #25 DUSP22 (ENSPSIG00000011481) IRF4 (ENSPSIG00000011619) EXOC2 (ENSPSIG00000011950) FOXF2 (ENSPSIG00000004712) GMDS (ENSPSIG00000004891) #31 ENSPSIG00000004958 Chinese turtle MODERN SPECIES 2232 RREB1 (ENSPSIG00000006582) ENSPSIG00000000639 LY86 (ENSPSIG00000007069) F13A1 (ENSPSIG00000007111) NRN1 (ENSPSIG00000007743) #7 FARS2 (ENSPSIG00000007752) #8 ENSPSIG00000000655 RPP40 (ENSPSIG00000007854) #11 ENSPSIG00000007881 #10 ECI2 (ENSPSIG00000008142) #14 FAM217A (ENSPSIG00000008371) #16 PRPF4B (ENSPSIG00000008502) #17 SLC22A23 (ENSPSIG00000009072) #20 PXDC1 (ENSPSIG00000009675) #19 PSMG4 (ENSPSIG00000009729) #21 TUBB2B (ENSPSIG00000010016) #22 ENSPSIG00000010210 #22 BPHL (ENSPSIG00000010301) #23 RIPK1 (ENSPSIG00000010708) #24 NQO2 (ENSPSIG00000011276) #25 DUSP22 (ENSPSIG00000011481) IRF4 (ENSPSIG00000011619) EXOC2 (ENSPSIG00000011950) FOXF2 (ENSPSIG00000004712) GMDS (ENSPSIG00000004891) #31 ENSPSIG00000004958 Archosauria ANCESTRAL SPECIES ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915 Australian saltwater crocodile DUPLICATION Australian saltwater crocodile MODERN SPECIES LY86 (ENSCPRG00005001383) F13A1 (ENSCPRG00005001285) NRN1 (ENSCPRG00005001282) #7 FARS2 (ENSCPRG00005001193) #8 LYRM4 (ENSCPRG00005001108) #9 RPP40 (ENSCPRG00005001044) #11 ENSCPRG00005001031 #10 ECI2 (ENSCPRG00005000853) #14 ENSCPRG00005000847 FAM217A (ENSCPRG00005000840) #16 PRPF4B (ENSCPRG00005000821) #17 PXDC1 (ENSCPRG00005000666) #19 SLC22A23 (ENSCPRG00005000653) #20 PSMG4 (ENSCPRG00005000572) #21 ENSCPRG00005000567 #22 ENSCPRG00005000564 #22 BPHL (ENSCPRG00005000493) #23 RIPK1 (ENSCPRG00005000470) #24 NQO2 (ENSCPRG00005000381) #25 DUSP22 (ENSCPRG00005000375) IRF4 (ENSCPRG00005000341) EXOC2 (ENSCPRG00005000238) FOXF2 (ENSCPRG00005017746) ENSCPRG00005017733 GMDS (ENSCPRG00005017730) #31 MYLK4 (ENSCPRG00005017700) #30 WRNIP1 (ENSCPRG00005017695) #29 SERPINB1 (ENSCPRG00005017691) #28 SERPINB8 (ENSCPRG00005017689) ENSCPRG00005017585 SERPINB10 (ENSCPRG00005017554) Australian saltwater crocodile MODERN SPECIES RREB1 (ENSCPRG00005001486) LY86 (ENSCPRG00005001383) F13A1 (ENSCPRG00005001285) NRN1 (ENSCPRG00005001282) #7 FARS2 (ENSCPRG00005001193) #8 LYRM4 (ENSCPRG00005001108) #9 RPP40 (ENSCPRG00005001044) #11 ENSCPRG00005001031 #10 ECI2 (ENSCPRG00005000853) #14 ENSCPRG00005000847 FAM217A (ENSCPRG00005000840) #16 PRPF4B (ENSCPRG00005000821) #17 PXDC1 (ENSCPRG00005000666) #19 SLC22A23 (ENSCPRG00005000653) #20 PSMG4 (ENSCPRG00005000572) #21 ENSCPRG00005000567 #22 ENSCPRG00005000564 #22 BPHL (ENSCPRG00005000493) #23 RIPK1 (ENSCPRG00005000470) #24 NQO2 (ENSCPRG00005000381) #25 DUSP22 (ENSCPRG00005000375) IRF4 (ENSCPRG00005000341) EXOC2 (ENSCPRG00005000238) FOXF2 (ENSCPRG00005017746) ENSCPRG00005017733 GMDS (ENSCPRG00005017730) #31 MYLK4 (ENSCPRG00005017700) #30 WRNIP1 (ENSCPRG00005017695) #29 SERPINB1 (ENSCPRG00005017691) #28 SERPINB8 (ENSCPRG00005017689) ENSCPRG00005017585 Aves ANCESTRAL SPECIES 24 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a African ostrich MODERN SPECIES 726 ENSSCUG00000010744 SSR1 (ENSSCUG00000010751) RREB1 (ENSSCUG00000010760) LY86 (ENSSCUG00000010764) F13A1 (ENSSCUG00000010770) NRN1 (ENSSCUG00000010777) #7 FARS2 (ENSSCUG00000010782) #8 ENSSCUG00000010786 RPP40 (ENSSCUG00000010789) #11 ENSSCUG00000010792 #10 ECI2 (ENSSCUG00000010805) #14 PRPF4B (ENSSCUG00000010810) #17 PXDC1 (ENSSCUG00000010818) #19 SLC22A23 (ENSSCUG00000010819) #20 ENSSCUG00000010821 TUBB2B (ENSSCUG00000010826) #22 BPHL (ENSSCUG00000010828) #23 RIPK1 (ENSSCUG00000010831) #24 NQO2 (ENSSCUG00000010834) #25 ENSSCUG00000010837 ENSSCUG00000010839 IRF4 (ENSSCUG00000010840) EXOC2 (ENSSCUG00000010844) GMDS (ENSSCUG00000010849) #31 MYLK4 (ENSSCUG00000010853) #30 WRNIP1 (ENSSCUG00000010857) #29 SERPINB1 (ENSSCUG00000010864) #28 SERPINB8 (ENSSCUG00000010867) ENSSCUG00000010870 ENSSCUG00000010873 SERPINB5 (ENSSCUG00000010876) Neognathae ANCESTRAL SPECIES ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Neognathae_b ANCESTRAL SPECIES 3 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Neognathae_c ANCESTRAL SPECIES 1 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Golden eagle MODERN SPECIES 9 SSR1 (ENSACCG00020012841) RREB1 (ENSACCG00020012781) LY86 (ENSACCG00020012756) F13A1 (ENSACCG00020012719) NRN1 (ENSACCG00020012698) #7 FARS2 (ENSACCG00020012651) #8 ENSACCG00020012608 #9 PPP1R3G (ENSACCG00020012576) RPP40 (ENSACCG00020012532) #11 ENSACCG00020012468 #10 ECI2 (ENSACCG00020012393) #14 PRPF4B (ENSACCG00020012258) #17 PXDC1 (ENSACCG00020012218) #19 SLC22A23 (ENSACCG00020012173) #20 PSMG4 (ENSACCG00020012113) #21 ENSACCG00020012081 #22 BPHL (ENSACCG00020011982) #23 RIPK1 (ENSACCG00020011942) #24 NQO2 (ENSACCG00020011913) #25 DUSP22 (ENSACCG00020011886) IRF4 (ENSACCG00020011853) EXOC2 (ENSACCG00020011786) FOXQ1 (ENSACCG00020011745) FOXF2 (ENSACCG00020011731) FOXC1 (ENSACCG00020011716) GMDS (ENSACCG00020011687) #31 MYLK4 (ENSACCG00020011621) #30 WRNIP1 (ENSACCG00020011491) #29 SERPINB1 (ENSACCG00020016192) #28 SERPINB8 (ENSACCG00020016184) ENSACCG00020016175 Kakapo DUPLICATION Kakapo MODERN SPECIES APCDD1 (ENSSHBG00005006347) VAPA (ENSSHBG00005006288) RAB31 (ENSSHBG00005006263) PPP4R1 (ENSSHBG00005006216) ENSSHBG00005006189 RALBP1 (ENSSHBG00005006172) TWSG1 (ENSSHBG00005006144) ANKRD12 (ENSSHBG00005006105) NDUFV2 (ENSSHBG00005006080) MTCL1 (ENSSHBG00005005903) RAB12 (ENSSHBG00005000650) ENSSHBG00005000649 SLC22A23 (ENSSHBG00005004433) #20 PSMG4 (ENSSHBG00005004425) #21 ENSSHBG00005004422 #22 ENSSHBG00005004411 #22 BPHL (ENSSHBG00005004398) #23 RIPK1 (ENSSHBG00005004382) #24 NQO2 (ENSSHBG00005004374) #25 DUSP22 (ENSSHBG00005004366) IRF4 (ENSSHBG00005004353) EXOC2 (ENSSHBG00005004310) FOXQ1 (ENSSHBG00005004279) FOXF2 (ENSSHBG00005004277) FOXC1 (ENSSHBG00005004271) GMDS (ENSSHBG00005004265) #31 MYLK4 (ENSSHBG00005004245) #30 WRNIP1 (ENSSHBG00005004231) #29 SERPINB1 (ENSSHBG00005004225) #28 SERPINB8 (ENSSHBG00005004219) ENSSHBG00005004209 Kakapo MODERN SPECIES NAPG (ENSSHBG00005006399) APCDD1 (ENSSHBG00005006347) VAPA (ENSSHBG00005006288) RAB31 (ENSSHBG00005006263) PPP4R1 (ENSSHBG00005006216) ENSSHBG00005006189 RALBP1 (ENSSHBG00005006172) TWSG1 (ENSSHBG00005006144) ANKRD12 (ENSSHBG00005006105) NDUFV2 (ENSSHBG00005006080) MTCL1 (ENSSHBG00005005903) RAB12 (ENSSHBG00005000650) ENSSHBG00005000649 SLC22A23 (ENSSHBG00005004433) #20 PSMG4 (ENSSHBG00005004425) #21 ENSSHBG00005004422 #22 ENSSHBG00005004411 #22 BPHL (ENSSHBG00005004398) #23 RIPK1 (ENSSHBG00005004382) #24 NQO2 (ENSSHBG00005004374) #25 DUSP22 (ENSSHBG00005004366) IRF4 (ENSSHBG00005004353) EXOC2 (ENSSHBG00005004310) FOXQ1 (ENSSHBG00005004279) FOXF2 (ENSSHBG00005004277) FOXC1 (ENSSHBG00005004271) GMDS (ENSSHBG00005004265) #31 MYLK4 (ENSSHBG00005004245) #30 WRNIP1 (ENSSHBG00005004231) #29 SERPINB1 (ENSSHBG00005004225) #28 SERPINB8 (ENSSHBG00005004219) Passeriformes ANCESTRAL SPECIES ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Great tit MODERN SPECIES 11 RIOK1 (ENSPMJG00000018337) SSR1 (ENSPMJG00000018338) RREB1 (ENSPMJG00000018339) LY86 (ENSPMJG00000018344) F13A1 (ENSPMJG00000018345) NRN1 (ENSPMJG00000018347) #7 FARS2 (ENSPMJG00000018349) #8 ENSPMJG00000018350 #9 RPP40 (ENSPMJG00000018352) #11 ENSPMJG00000018353 #10 ECI2 (ENSPMJG00000018355) #14 PRPF4B (ENSPMJG00000018359) #17 PXDC1 (ENSPMJG00000018361) #19 SLC22A23 (ENSPMJG00000018363) #20 PSMG4 (ENSPMJG00000018368) #21 ENSPMJG00000018369 #22 BPHL (ENSPMJG00000018371) #23 RIPK1 (ENSPMJG00000018375) #24 ENSPMJG00000018377 DUSP22 (ENSPMJG00000018378) IRF4 (ENSPMJG00000018379) EXOC2 (ENSPMJG00000018383) FOXQ1 (ENSPMJG00000018389) FOXF2 (ENSPMJG00000018391) FOXC1 (ENSPMJG00000018394) GMDS (ENSPMJG00000000076) #31 MYLK4 (ENSPMJG00000000147) #30 WRNIP1 (ENSPMJG00000000158) #29 SERPINB1 (ENSPMJG00000000195) #28 SERPINB8 (ENSPMJG00000000213) ENSPMJG00000000225 Passeriformes_d ANCESTRAL SPECIES ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT01040000244549 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000163866.a.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 Flycatcher DUPLICATION Flycatcher MODERN SPECIES 11 DSP (ENSFALG00000013249) RIOK1 (ENSFALG00000013244) SSR1 (ENSFALG00000028864) RREB1 (ENSFALG00000013231) LY86 (ENSFALG00000013228) F13A1 (ENSFALG00000013198) NRN1 (ENSFALG00000013174) #7 FARS2 (ENSFALG00000013171) #8 LYRM4 (ENSFALG00000013168) #9 RPP40 (ENSFALG00000013166) #11 ENSFALG00000013160 #10 ECI2 (ENSFALG00000013156) #14 PRPF4B (ENSFALG00000013150) #17 PXDC1 (ENSFALG00000013145) #19 SLC22A23 (ENSFALG00000026713) #20 ENSFALG00000013119 #22 PSMG4 (ENSFALG00000014789) #21 ENSFALG00000013131 #22 BPHL (ENSFALG00000013104) #23 RIPK1 (ENSFALG00000013093) #24 ENSFALG00000028950 #25 ENSFALG00000023587 #25 DUSP22 (ENSFALG00000029026) IRF4 (ENSFALG00000013071) ENSFALG00000025007 EXOC2 (ENSFALG00000013064) ENSFALG00000026073 ENSFALG00000027331 GMDS (ENSFALG00000013059) #31 MYLK4 (ENSFALG00000023986) #30 WRNIP1 (ENSFALG00000013052) #29 Flycatcher MODERN SPECIES 11 SSR1 (ENSFALG00000028864) RREB1 (ENSFALG00000013231) LY86 (ENSFALG00000013228) F13A1 (ENSFALG00000013198) NRN1 (ENSFALG00000013174) #7 FARS2 (ENSFALG00000013171) #8 LYRM4 (ENSFALG00000013168) #9 RPP40 (ENSFALG00000013166) #11 ENSFALG00000013160 #10 ECI2 (ENSFALG00000013156) #14 PRPF4B (ENSFALG00000013150) #17 PXDC1 (ENSFALG00000013145) #19 SLC22A23 (ENSFALG00000026713) #20 ENSFALG00000013119 #22 PSMG4 (ENSFALG00000014789) #21 ENSFALG00000013131 #22 BPHL (ENSFALG00000013104) #23 RIPK1 (ENSFALG00000013093) #24 ENSFALG00000028950 #25 ENSFALG00000023587 #25 DUSP22 (ENSFALG00000029026) IRF4 (ENSFALG00000013071) ENSFALG00000025007 EXOC2 (ENSFALG00000013064) ENSFALG00000026073 ENSFALG00000027331 GMDS (ENSFALG00000013059) #31 MYLK4 (ENSFALG00000023986) #30 WRNIP1 (ENSFALG00000013052) #29 SERPINB1 (ENSFALG00000028871) #28 ENSFALG00000013046 Passeriformes_g ANCESTRAL SPECIES 3 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT01040000244549 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000163866.a.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 76 PABPN1L (ENSGFOG00000004646) ENSGFOG00000004668 ENSGFOG00000004675 ACSF3 (ENSGFOG00000004695) ANKRD11 (ENSGFOG00000004732) SPG7 (ENSGFOG00000004756) RPL13 (ENSGFOG00000004794) ENSGFOG00000004867 CHMP1A (ENSGFOG00000004907) CDK10 (ENSGFOG00000004922) ZNF276 (ENSGFOG00000004964) FANCA (ENSGFOG00000005012) SPIRE2 (ENSGFOG00000005126) TCF25 (ENSGFOG00000005151) MC1R (ENSGFOG00000005172) ENSGFOG00000005182 #22 DEF8 (ENSGFOG00000005196) GAS8 (ENSGFOG00000005208) ENSGFOG00000005220 ENSGFOG00000005227 CDH1 (ENSGFOG00000005242) HAS3 (ENSGFOG00000005448) CHTF8 (ENSGFOG00000005461) UTP4 (ENSGFOG00000005478) SNTB2 (ENSGFOG00000005490) VPS4A (ENSGFOG00000008500) COG8 (ENSGFOG00000008651) TMED6 (ENSGFOG00000008658) TERF2 (ENSGFOG00000008665) CYB5B (ENSGFOG00000008672) NFAT5 (ENSGFOG00000008689) Medium ground finch MODERN SPECIES 100 ENSGFOG00000008975 #22 BPHL (ENSGFOG00000008775) #23 RIPK1 (ENSGFOG00000008752) #24 NQO2 (ENSGFOG00000008738) #25 ENSGFOG00000008733 IRF4 (ENSGFOG00000008701) EXOC2 (ENSGFOG00000008679) ENSGFOG00000008669 GMDS (ENSGFOG00000008614) #31 MYLK4 (ENSGFOG00000008576) #30 WRNIP1 (ENSGFOG00000008533) #29 SERPINB1 (ENSGFOG00000008522) #28 ENSGFOG00000008517 ENSGFOG00000008513 ENSGFOG00000008476 ENSGFOG00000008425 Medium ground finch MODERN SPECIES 79 RIOK1 (ENSGFOG00000013445) SSR1 (ENSGFOG00000013437) RREB1 (ENSGFOG00000013428) LY86 (ENSGFOG00000013427) F13A1 (ENSGFOG00000013409) NRN1 (ENSGFOG00000013406) #7 FARS2 (ENSGFOG00000013403) #8 ENSGFOG00000013401 RPP40 (ENSGFOG00000013400) #11 ENSGFOG00000013398 #10 ECI2 (ENSGFOG00000013394) #14 PRPF4B (ENSGFOG00000013384) #17 PXDC1 (ENSGFOG00000013381) #19 SLC22A23 (ENSGFOG00000013374) #20 ENSGFOG00000013373 ENSGFOG00000013371 #22 ENSGFOG00000013368 Passeroidea ANCESTRAL SPECIES 2 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT01040000244549 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000163866.a.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 Zebra finch MODERN SPECIES 12 RREB1 (ENSTGUG00000002309) LY86 (ENSTGUG00000026091) F13A1 (ENSTGUG00000002276) NRN1 (ENSTGUG00000002274) #7 FARS2 (ENSTGUG00000002269) #8 LYRM4 (ENSTGUG00000021255) #9 PPP1R3G (ENSTGUG00000020062) ENSTGUG00000021338 RPP40 (ENSTGUG00000002258) #11 ENSTGUG00000002246 #10 ECI2 (ENSTGUG00000002230) #14 PRPF4B (ENSTGUG00000002208) #17 PXDC1 (ENSTGUG00000002202) #19 SLC22A23 (ENSTGUG00000002194) #20 PSMG4 (ENSTGUG00000023303) #21 ENSTGUG00000028536 #22 BPHL (ENSTGUG00000002178) #23 RIPK1 (ENSTGUG00000002170) #24 NQO2 (ENSTGUG00000002159) #25 DUSP22 (ENSTGUG00000027185) IRF4 (ENSTGUG00000002144) EXOC2 (ENSTGUG00000002131) ENSTGUG00000022060 FOXQ1 (ENSTGUG00000018779) ENSTGUG00000002129 FOXC1 (ENSTGUG00000002127) GMDS (ENSTGUG00000002124) #31 MYLK4 (ENSTGUG00000019999) #30 WRNIP1 (ENSTGUG00000002117) #29 SERPINB1 (ENSTGUG00000002101) #28 ENSTGUG00000021604 Common canary MODERN SPECIES RIOK1 (ENSSCAG00000001794) SSR1 (ENSSCAG00000001843) RREB1 (ENSSCAG00000001855) LY86 (ENSSCAG00000001879) F13A1 (ENSSCAG00000001885) NRN1 (ENSSCAG00000001893) #7 FARS2 (ENSSCAG00000001940) #8 ENSSCAG00000001955 RPP40 (ENSSCAG00000001959) #11 ENSSCAG00000001965 #10 ECI2 (ENSSCAG00000001987) #14 PRPF4B (ENSSCAG00000001999) #17 PXDC1 (ENSSCAG00000002010) #19 SLC22A23 (ENSSCAG00000002027) #20 PSMG4 (ENSSCAG00000002041) #21 TUBB2B (ENSSCAG00000002047) #22 BPHL (ENSSCAG00000002072) #23 RIPK1 (ENSSCAG00000002077) #24 NQO2 (ENSSCAG00000002088) #25 DUSP22 (ENSSCAG00000002092) IRF4 (ENSSCAG00000002096) ENSSCAG00000002099 EXOC2 (ENSSCAG00000002115) FOXF2 (ENSSCAG00000002132) ENSSCAG00000002139 GMDS (ENSSCAG00000002174) #31 MYLK4 (ENSSCAG00000002209) #30 WRNIP1 (ENSSCAG00000002234) #29 SERPINB1 (ENSSCAG00000002246) #28 ENSSCAG00000002253 ENSSCAG00000002262 Galloanserae ANCESTRAL SPECIES ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209.d #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Anatidae ANCESTRAL SPECIES 3 ENSGT00940000155171.a.a ENSGT00940000155171.a.b ENSGT00390000012731.a.a ENSGT00390000004886 ENSGT00500000044852.a ENSGT00940000154574.c ENSGT00940000154952.a.b ENSGT00940000155533.d ENSGT00940000154766.a.a ENSGT00940000166969.b ENSGT00390000009802.a ENSGT00940000155562 #17 ENSGT00390000009209.d #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000163866.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Duck MODERN SPECIES 10 ANKRD33B (ENSAPLG00000016329) DAP (ENSAPLG00000021887) ENSAPLG00000016359 ENSAPLG00000028170 ENSAPLG00000026688 ENSAPLG00000022935 ENSAPLG00000026164 ENSAPLG00000018807 TRIO (ENSAPLG00000008508) ENSAPLG00000017143 OTULINL (ENSAPLG00000009753) PRPF4B (ENSAPLG00000009869) #17 ENSAPLG00000013227 #19 SLC22A23 (ENSAPLG00000015771) #20 PSMG4 (ENSAPLG00000023970) #21 TUBB2A (ENSAPLG00000027345) #22 BPHL (ENSAPLG00000015545) #23 RIPK1 (ENSAPLG00000015420) #24 NQO2 (ENSAPLG00000015289) #25 DUSP22 (ENSAPLG00000015108) IRF4 (ENSAPLG00000014646) EXOC2 (ENSAPLG00000013910) ENSAPLG00000017427 FOXC1 (ENSAPLG00000017354) ENSAPLG00000026009 GMDS (ENSAPLG00000013864) #31 MYLK4 (ENSAPLG00000013701) #30 WRNIP1 (ENSAPLG00000013539) #29 SERPINB1 (ENSAPLG00000012958) #28 SERPINB8 (ENSAPLG00000012569) ENSAPLG00000001572 Pink-footed goose DUPLICATION Pink-footed goose MODERN SPECIES 55 DNAH5 (ENSABRG00000004814) TRIO (ENSABRG00000005891) OTULINL (ENSABRG00000011720) PRPF4B (ENSABRG00000011735) #17 PXDC1 (ENSABRG00000011748) #19 SLC22A23 (ENSABRG00000011756) #20 PSMG4 (ENSABRG00000011758) #21 ENSABRG00000011762 ENSABRG00000011765 #22 ENSABRG00000011768 #22 BPHL (ENSABRG00000011769) #23 DUSP22 (ENSABRG00000011775) RIPK1 (ENSABRG00000011788) #24 NQO2 (ENSABRG00000011803) #25 IRF4 (ENSABRG00000011809) EXOC2 (ENSABRG00000011820) FOXF2 (ENSABRG00000011864) FOXC1 (ENSABRG00000011867) GMDS (ENSABRG00000011874) #31 MYLK4 (ENSABRG00000011911) #30 WRNIP1 (ENSABRG00000011943) #29 SERPINB1 (ENSABRG00000011958) #28 SERPINB8 (ENSABRG00000011968) ENSABRG00000011978 Pink-footed goose MODERN SPECIES 55 DNAH5 (ENSABRG00000004814) TRIO (ENSABRG00000005891) OTULINL (ENSABRG00000011720) PRPF4B (ENSABRG00000011735) #17 PXDC1 (ENSABRG00000011748) #19 SLC22A23 (ENSABRG00000011756) #20 PSMG4 (ENSABRG00000011758) #21 ENSABRG00000011762 ENSABRG00000011765 #22 ENSABRG00000011768 #22 BPHL (ENSABRG00000011769) #23 DUSP22 (ENSABRG00000011775) RIPK1 (ENSABRG00000011788) #24 NQO2 (ENSABRG00000011803) #25 IRF4 (ENSABRG00000011809) EXOC2 (ENSABRG00000011820) FOXF2 (ENSABRG00000011864) FOXC1 (ENSABRG00000011867) GMDS (ENSABRG00000011874) #31 MYLK4 (ENSABRG00000011911) #30 WRNIP1 (ENSABRG00000011943) #29 SERPINB1 (ENSABRG00000011958) #28 SERPINB8 (ENSABRG00000011968) ENSABRG00000011978 ENSABRG00000011985 Phasianidae ANCESTRAL SPECIES 1 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209.d #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a Japanese quail DUPLICATION Japanese quail MODERN SPECIES 11 RREB1 (ENSCJPG00005016991) LY86 (ENSCJPG00005016981) F13A1 (ENSCJPG00005016970) NRN1 (ENSCJPG00005016967) #7 FARS2 (ENSCJPG00005016936) #8 LYRM4 (ENSCJPG00005016880) #9 PPP1R3G (ENSCJPG00005016879) RPP40 (ENSCJPG00005016878) #11 ENSCJPG00005016876 #10 ECI2 (ENSCJPG00005016830) #14 PRPF4B (ENSCJPG00005016829) #17 ENSCJPG00005016794 #19 SLC22A23 (ENSCJPG00005016793) #20 PSMG4 (ENSCJPG00005016792) #21 ENSCJPG00005016791 #22 ENSCJPG00005016790 #22 BPHL (ENSCJPG00005016789) #23 RIPK1 (ENSCJPG00005016788) #24 SERPINB11 (ENSCJPG00005016777) SERPINB5 (ENSCJPG00005016776) VPS4B (ENSCJPG00005016775) KDSR (ENSCJPG00005016774) BCL2 (ENSCJPG00005016773) ENSCJPG00005016772 PHLPP1 (ENSCJPG00005016771) ZCCHC2 (ENSCJPG00005016739) TNFRSF11A (ENSCJPG00005016738) RELCH (ENSCJPG00005016435) PIGN (ENSCJPG00005015650) RNF152 (ENSCJPG00005015648) CDH20 (ENSCJPG00005015646) Japanese quail MODERN SPECIES 11 SSR1 (ENSCJPG00005016996) RREB1 (ENSCJPG00005016991) LY86 (ENSCJPG00005016981) F13A1 (ENSCJPG00005016970) NRN1 (ENSCJPG00005016967) #7 FARS2 (ENSCJPG00005016936) #8 LYRM4 (ENSCJPG00005016880) #9 PPP1R3G (ENSCJPG00005016879) RPP40 (ENSCJPG00005016878) #11 ENSCJPG00005016876 #10 ECI2 (ENSCJPG00005016830) #14 PRPF4B (ENSCJPG00005016829) #17 ENSCJPG00005016794 #19 SLC22A23 (ENSCJPG00005016793) #20 PSMG4 (ENSCJPG00005016792) #21 ENSCJPG00005016791 #22 ENSCJPG00005016790 #22 BPHL (ENSCJPG00005016789) #23 RIPK1 (ENSCJPG00005016788) #24 SERPINB11 (ENSCJPG00005016777) SERPINB5 (ENSCJPG00005016776) VPS4B (ENSCJPG00005016775) KDSR (ENSCJPG00005016774) BCL2 (ENSCJPG00005016773) ENSCJPG00005016772 PHLPP1 (ENSCJPG00005016771) ZCCHC2 (ENSCJPG00005016739) TNFRSF11A (ENSCJPG00005016738) RELCH (ENSCJPG00005016435) PIGN (ENSCJPG00005015650) RNF152 (ENSCJPG00005015648) Phasianidae_b ANCESTRAL SPECIES 1 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209.d #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000163866.a.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C ENSGT00940000165915.a ENSGT00940000165915.b Chicken DUPLICATION Chicken MODERN SPECIES 11 LY86 (ENSGALG00010010896) F13A1 (ENSGALG00010010923) NRN1 (ENSGALG00010010942) #7 FARS2 (ENSGALG00010010977) #8 LYRM4 (ENSGALG00010011015) #9 PPP1R3G (ENSGALG00010011021) ENSGALG00010011235 ENSGALG00010011247 #10 ECI2 (ENSGALG00010011306) #14 PRPF4B (ENSGALG00010011318) #17 PXDC1 (ENSGALG00010011343) #19 SLC22A23 (ENSGALG00010011348) #20 PSMG4 (ENSGALG00010011365) #21 TUBB2B (ENSGALG00010011378) #22 BPHL (ENSGALG00010011400) #23 ENSGALG00010012742 #22 RIPK1 (ENSGALG00010011418) #24 NQO2 (ENSGALG00010011426) #25 DUSP22 (ENSGALG00010011449) IRF4 (ENSGALG00010011461) EXOC2 (ENSGALG00010011509) FOXQ1 (ENSGALG00010012139) ENSGALG00010011521 GMDS (ENSGALG00010011551) #31 MYLK4 (ENSGALG00010011578) #30 WRNIP1 (ENSGALG00010011593) #29 SERPINB1 (ENSGALG00010011626) #28 SERPINB6 (ENSGALG00010011651) SERPINB10B (ENSGALG00010011664) ENSGALG00010011674 OVAL (ENSGALG00010011679) Chicken MODERN SPECIES 11 SSR1 (ENSGALG00010010270) RREB1 (ENSGALG00010010349) LY86 (ENSGALG00010010896) F13A1 (ENSGALG00010010923) NRN1 (ENSGALG00010010942) #7 FARS2 (ENSGALG00010010977) #8 LYRM4 (ENSGALG00010011015) #9 PPP1R3G (ENSGALG00010011021) ENSGALG00010011235 ENSGALG00010011247 #10 ECI2 (ENSGALG00010011306) #14 PRPF4B (ENSGALG00010011318) #17 PXDC1 (ENSGALG00010011343) #19 SLC22A23 (ENSGALG00010011348) #20 PSMG4 (ENSGALG00010011365) #21 TUBB2B (ENSGALG00010011378) #22 BPHL (ENSGALG00010011400) #23 ENSGALG00010012742 #22 RIPK1 (ENSGALG00010011418) #24 NQO2 (ENSGALG00010011426) #25 DUSP22 (ENSGALG00010011449) IRF4 (ENSGALG00010011461) EXOC2 (ENSGALG00010011509) FOXQ1 (ENSGALG00010012139) ENSGALG00010011521 GMDS (ENSGALG00010011551) #31 MYLK4 (ENSGALG00010011578) #30 WRNIP1 (ENSGALG00010011593) #29 SERPINB1 (ENSGALG00010011626) #28 SERPINB6 (ENSGALG00010011651) SERPINB10B (ENSGALG00010011664) Turkey DUPLICATION Turkey MODERN SPECIES 22 RIOK1 (ENSMGAG00000003816) SSR1 (ENSMGAG00000003888) RREB1 (ENSMGAG00000003910) LY86 (ENSMGAG00000003927) F13A1 (ENSMGAG00000003939) NRN1 (ENSMGAG00000022812) #7 FARS2 (ENSMGAG00000003984) #8 LYRM4 (ENSMGAG00000004002) #9 RPP40 (ENSMGAG00000004009) #11 ENSMGAG00000004026 #10 ECI2 (ENSMGAG00000004079) #14 PRPF4B (ENSMGAG00000004104) #17 PXDC1 (ENSMGAG00000017797) #19 SLC22A23 (ENSMGAG00000004155) #20 ENSMGAG00000022935 ENSMGAG00000004168 #22 BPHL (ENSMGAG00000004203) #23 RIPK1 (ENSMGAG00000004233) #24 DUSP22 (ENSMGAG00000004393) NQO2 (ENSMGAG00000004502) #25 IRF4 (ENSMGAG00000004406) ENSMGAG00000004422 GMDS (ENSMGAG00000004494) #31 MYLK4 (ENSMGAG00000004532) #30 WRNIP1 (ENSMGAG00000004262) #29 SERPINB1 (ENSMGAG00000004352) #28 ENSMGAG00000004267 ENSMGAG00000018556 ENSMGAG00000004373 SERPINB10 (ENSMGAG00000004382) SERPINB14 (ENSMGAG00000016695) Turkey MODERN SPECIES 474 ENSMGAG00000020741 #22 Lepidosauria ANCESTRAL SPECIES 2 ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00910000144592 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000167417 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C Episquamata ANCESTRAL SPECIES 1 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.f Toxicofera ANCESTRAL SPECIES 8 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000163866.a.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 Lizard DUPLICATION Lizard MODERN SPECIES 1666 NDOR1 (ENSACAG00000012920) TMEM203 (ENSACAG00000038616) TPRN (ENSACAG00000012919) ENSACAG00000012869 #22 ENSACAG00000012845 Lizard MODERN SPECIES 861 KDSR (ENSACAG00000017590) VPS4B (ENSACAG00000017602) SERPINB5 (ENSACAG00000017619) SERPINB11 (ENSACAG00000017621) ENSACAG00000043944 ENSACAG00000017641 ENSACAG00000017642 PRPF4B (ENSACAG00000017650) #17 PXDC1 (ENSACAG00000017660) #19 SLC22A23 (ENSACAG00000042433) #20 ENSACAG00000035794 ENSACAG00000038434 #22 ENSACAG00000039065 #22 BPHL (ENSACAG00000017692) #23 RIPK1 (ENSACAG00000017693) #24 NQO2 (ENSACAG00000017701) #25 DUSP22 (ENSACAG00000017705) IRF4 (ENSACAG00000017711) EXOC2 (ENSACAG00000017715) FOXQ1 (ENSACAG00000038044) ENSACAG00000017732 FOXC1 (ENSACAG00000044418) Lizard MODERN SPECIES 861 KDSR (ENSACAG00000017590) VPS4B (ENSACAG00000017602) SERPINB5 (ENSACAG00000017619) SERPINB11 (ENSACAG00000017621) ENSACAG00000043944 ENSACAG00000017641 ENSACAG00000017642 PRPF4B (ENSACAG00000017650) #17 PXDC1 (ENSACAG00000017660) #19 SLC22A23 (ENSACAG00000042433) #20 ENSACAG00000035794 ENSACAG00000038434 #22 ENSACAG00000039065 #22 BPHL (ENSACAG00000017692) #23 RIPK1 (ENSACAG00000017693) #24 NQO2 (ENSACAG00000017701) #25 DUSP22 (ENSACAG00000017705) IRF4 (ENSACAG00000017711) EXOC2 (ENSACAG00000017715) FOXQ1 (ENSACAG00000038044) ENSACAG00000017732 FOXC1 (ENSACAG00000044418) Elapidae ANCESTRAL SPECIES 8 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153.e ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573.e #28 ENSGT00940000154573.f #28 ENSGT00940000154835.C.f.c.b.b Elapidae_a ANCESTRAL SPECIES 14 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153.f ENSGT00940000157153.e ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573.e #28 Blue-lipped sea krait MODERN SPECIES 3655 TUBB2A (ENSLLTG00000001528) #22 Acanthophiinae ANCESTRAL SPECIES 16 ENSGT00400000022103.a ENSGT00940000157533 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00940000175246 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153.f ENSGT00940000157153.e ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573.e #28 Eastern brown snake MODERN SPECIES 75 RREB1 (ENSPTXG00000014803) LY86 (ENSPTXG00000014806) F13A1 (ENSPTXG00000014807) NRN1 (ENSPTXG00000014810) #7 FARS2 (ENSPTXG00000014815) #8 ENSPTXG00000014816 LYRM4 (ENSPTXG00000014817) #9 PPP1R3G (ENSPTXG00000014818) RPP40 (ENSPTXG00000014825) #11 ENSPTXG00000014829 #10 ECI2 (ENSPTXG00000014830) #14 PRPF4B (ENSPTXG00000014832) #17 PXDC1 (ENSPTXG00000014833) #19 SLC22A23 (ENSPTXG00000012278) #20 PSMG4 (ENSPTXG00000012279) #21 ENSPTXG00000012281 #22 ENSPTXG00000012285 BPHL (ENSPTXG00000012286) #23 RIPK1 (ENSPTXG00000012287) #24 NQO2 (ENSPTXG00000012288) #25 ENSPTXG00000012290 ENSPTXG00000012291 IRF4 (ENSPTXG00000012295) EXOC2 (ENSPTXG00000012355) FOXF2 (ENSPTXG00000012358) FOXC1 (ENSPTXG00000012359) GMDS (ENSPTXG00000012360) #31 MYLK4 (ENSPTXG00000012362) #30 WRNIP1 (ENSPTXG00000012366) #29 ENSPTXG00000012367 #28 ENSPTXG00000012368 #28 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 84 SSR1 (ENSNSUG00000005581) RREB1 (ENSNSUG00000005568) LY86 (ENSNSUG00000005567) F13A1 (ENSNSUG00000005558) NRN1 (ENSNSUG00000005557) #7 FARS2 (ENSNSUG00000005555) #8 LYRM4 (ENSNSUG00000005554) #9 PPP1R3G (ENSNSUG00000005553) RPP40 (ENSNSUG00000005551) #11 ENSNSUG00000005548 #10 ECI2 (ENSNSUG00000005541) #14 PRPF4B (ENSNSUG00000005540) #17 PXDC1 (ENSNSUG00000005538) #19 SLC22A23 (ENSNSUG00000005534) #20 PSMG4 (ENSNSUG00000005533) #21 ENSNSUG00000005532 #22 ENSNSUG00000005510 #22 TUBB2A (ENSNSUG00000005509) #22 BPHL (ENSNSUG00000005503) #23 RIPK1 (ENSNSUG00000005501) #24 NQO2 (ENSNSUG00000005474) #25 ENSNSUG00000005471 ENSNSUG00000005470 IRF4 (ENSNSUG00000005456) EXOC2 (ENSNSUG00000005455) FOXQ1 (ENSNSUG00000005453) FOXC1 (ENSNSUG00000005451) GMDS (ENSNSUG00000005444) #31 MYLK4 (ENSNSUG00000005436) #30 WRNIP1 (ENSNSUG00000005435) #29 ENSNSUG00000005434 #28 Mainland tiger snake MODERN SPECIES 84 LY86 (ENSNSUG00000005567) F13A1 (ENSNSUG00000005558) NRN1 (ENSNSUG00000005557) #7 FARS2 (ENSNSUG00000005555) #8 LYRM4 (ENSNSUG00000005554) #9 PPP1R3G (ENSNSUG00000005553) RPP40 (ENSNSUG00000005551) #11 ENSNSUG00000005548 #10 ECI2 (ENSNSUG00000005541) #14 PRPF4B (ENSNSUG00000005540) #17 PXDC1 (ENSNSUG00000005538) #19 SLC22A23 (ENSNSUG00000005534) #20 PSMG4 (ENSNSUG00000005533) #21 ENSNSUG00000005532 #22 ENSNSUG00000005510 #22 TUBB2A (ENSNSUG00000005509) #22 BPHL (ENSNSUG00000005503) #23 RIPK1 (ENSNSUG00000005501) #24 NQO2 (ENSNSUG00000005474) #25 ENSNSUG00000005471 ENSNSUG00000005470 IRF4 (ENSNSUG00000005456) EXOC2 (ENSNSUG00000005455) FOXQ1 (ENSNSUG00000005453) FOXC1 (ENSNSUG00000005451) GMDS (ENSNSUG00000005444) #31 MYLK4 (ENSNSUG00000005436) #30 WRNIP1 (ENSNSUG00000005435) #29 ENSNSUG00000005434 #28 ENSNSUG00000005433 #28 Mainland tiger snake MODERN SPECIES 84 RREB1 (ENSNSUG00000005568) LY86 (ENSNSUG00000005567) F13A1 (ENSNSUG00000005558) NRN1 (ENSNSUG00000005557) #7 FARS2 (ENSNSUG00000005555) #8 LYRM4 (ENSNSUG00000005554) #9 PPP1R3G (ENSNSUG00000005553) RPP40 (ENSNSUG00000005551) #11 ENSNSUG00000005548 #10 ECI2 (ENSNSUG00000005541) #14 PRPF4B (ENSNSUG00000005540) #17 PXDC1 (ENSNSUG00000005538) #19 SLC22A23 (ENSNSUG00000005534) #20 PSMG4 (ENSNSUG00000005533) #21 ENSNSUG00000005532 #22 ENSNSUG00000005510 #22 TUBB2A (ENSNSUG00000005509) #22 BPHL (ENSNSUG00000005503) #23 RIPK1 (ENSNSUG00000005501) #24 NQO2 (ENSNSUG00000005474) #25 ENSNSUG00000005471 ENSNSUG00000005470 IRF4 (ENSNSUG00000005456) EXOC2 (ENSNSUG00000005455) FOXQ1 (ENSNSUG00000005453) FOXC1 (ENSNSUG00000005451) GMDS (ENSNSUG00000005444) #31 MYLK4 (ENSNSUG00000005436) #30 WRNIP1 (ENSNSUG00000005435) #29 ENSNSUG00000005434 #28 ENSNSUG00000005433 #28 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 2 RREB1 (ENSNNAG00000008698) LY86 (ENSNNAG00000008627) F13A1 (ENSNNAG00000008507) NRN1 (ENSNNAG00000008461) #7 FARS2 (ENSNNAG00000008399) #8 LYRM4 (ENSNNAG00000008378) #9 PPP1R3G (ENSNNAG00000008372) RPP40 (ENSNNAG00000008348) #11 ENSNNAG00000008323 #10 ECI2 (ENSNNAG00000008208) #14 PRPF4B (ENSNNAG00000007587) #17 PXDC1 (ENSNNAG00000016457) #19 SLC22A23 (ENSNNAG00000016441) #20 PSMG4 (ENSNNAG00000016435) #21 ENSNNAG00000016425 #22 ENSNNAG00000016415 #22 BPHL (ENSNNAG00000016410) #23 ENSNNAG00000016405 NQO2 (ENSNNAG00000016400) #25 DUSP22 (ENSNNAG00000016392) IRF4 (ENSNNAG00000016381) ENSNNAG00000016376 FOXF2 (ENSNNAG00000016367) FOXC1 (ENSNNAG00000016361) GMDS (ENSNNAG00000016354) #31 MYLK4 (ENSNNAG00000016322) #30 WRNIP1 (ENSNNAG00000016296) #29 SERPINB1 (ENSNNAG00000016284) #28 ENSNNAG00000016209 ENSNNAG00000016179 ENSNNAG00000016150 Indian cobra MODERN SPECIES 2 SSR1 (ENSNNAG00000009475) RREB1 (ENSNNAG00000008698) LY86 (ENSNNAG00000008627) F13A1 (ENSNNAG00000008507) NRN1 (ENSNNAG00000008461) #7 FARS2 (ENSNNAG00000008399) #8 LYRM4 (ENSNNAG00000008378) #9 PPP1R3G (ENSNNAG00000008372) RPP40 (ENSNNAG00000008348) #11 ENSNNAG00000008323 #10 ECI2 (ENSNNAG00000008208) #14 PRPF4B (ENSNNAG00000007587) #17 PXDC1 (ENSNNAG00000016457) #19 SLC22A23 (ENSNNAG00000016441) #20 PSMG4 (ENSNNAG00000016435) #21 ENSNNAG00000016425 #22 ENSNNAG00000016415 #22 BPHL (ENSNNAG00000016410) #23 ENSNNAG00000016405 NQO2 (ENSNNAG00000016400) #25 DUSP22 (ENSNNAG00000016392) IRF4 (ENSNNAG00000016381) ENSNNAG00000016376 FOXF2 (ENSNNAG00000016367) FOXC1 (ENSNNAG00000016361) GMDS (ENSNNAG00000016354) #31 MYLK4 (ENSNNAG00000016322) #30 WRNIP1 (ENSNNAG00000016296) #29 SERPINB1 (ENSNNAG00000016284) #28 ENSNNAG00000016209 ENSNNAG00000016179 Laterata ANCESTRAL SPECIES 5 ENSGT00390000018605 ENSGT01050000244939.a.a.a ENSGT00530000063853.a.a.b #7 ENSGT00940000158071 #8 ENSGT00940000157289.a #9 ENSGT00940000163747 ENSGT00390000014167 #11 ENSGT00940000155106 #10 ENSGT00940000155105 #14 ENSGT00390000008360 #15 ENSGT00940000154543.b #16 ENSGT00940000155562 #17 ENSGT00390000009209 #19 ENSGT00940000157354 #20 ENSGT00390000011804 #21 ENSGT00940000154150 #22 ENSGT00390000004746 #23 ENSGT00940000159347 #24 ENSGT00940000156563 #25 ENSGT00940000157153 ENSGT00940000159059 ENSGT00390000010872 ENSGT00940000162937.b ENSGT00940000162527 ENSGT00940000162303.b ENSGT00440000033640 #31 ENSGT00940000156211.b #30 ENSGT00390000008538 #29 ENSGT00940000154573 #28 ENSGT00940000154835.C.f ENSGT00940000165915 Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 4 LY86 (ENSSMRG00000006825) F13A1 (ENSSMRG00000006851) NRN1 (ENSSMRG00000008058) #7 FARS2 (ENSSMRG00000008101) #8 LYRM4 (ENSSMRG00000008133) #9 PPP1R3G (ENSSMRG00000008139) RPP40 (ENSSMRG00000008143) #11 ENSSMRG00000008170 #10 ENSSMRG00000008195 #14 ECI2 (ENSSMRG00000008211) #14 ENSSMRG00000008212 #16 PRPF4B (ENSSMRG00000008213) #17 PXDC1 (ENSSMRG00000008220) #19 SLC22A23 (ENSSMRG00000008240) #20 PSMG4 (ENSSMRG00000008242) #21 ENSSMRG00000008243 #22 TUBB2B (ENSSMRG00000008244) #22 BPHL (ENSSMRG00000008245) #23 RIPK1 (ENSSMRG00000008251) #24 DUSP22 (ENSSMRG00000008261) NQO2 (ENSSMRG00000008267) #25 IRF4 (ENSSMRG00000008285) EXOC2 (ENSSMRG00000008321) ENSSMRG00000008323 FOXQ1 (ENSSMRG00000008344) FOXF2 (ENSSMRG00000008387) FOXC1 (ENSSMRG00000008390) GMDS (ENSSMRG00000008413) #31 MYLK4 (ENSSMRG00000008475) #30 WRNIP1 (ENSSMRG00000008479) #29 ENSSMRG00000008497 Argentine black and white tegu MODERN SPECIES 4 F13A1 (ENSSMRG00000006851) NRN1 (ENSSMRG00000008058) #7 FARS2 (ENSSMRG00000008101) #8 LYRM4 (ENSSMRG00000008133) #9 PPP1R3G (ENSSMRG00000008139) RPP40 (ENSSMRG00000008143) #11 ENSSMRG00000008170 #10 ENSSMRG00000008195 #14 ECI2 (ENSSMRG00000008211) #14 ENSSMRG00000008212 #16 PRPF4B (ENSSMRG00000008213) #17 PXDC1 (ENSSMRG00000008220) #19 SLC22A23 (ENSSMRG00000008240) #20 PSMG4 (ENSSMRG00000008242) #21 ENSSMRG00000008243 #22 TUBB2B (ENSSMRG00000008244) #22 BPHL (ENSSMRG00000008245) #23 RIPK1 (ENSSMRG00000008251) #24 DUSP22 (ENSSMRG00000008261) NQO2 (ENSSMRG00000008267) #25 IRF4 (ENSSMRG00000008285) EXOC2 (ENSSMRG00000008321) ENSSMRG00000008323 FOXQ1 (ENSSMRG00000008344) FOXF2 (ENSSMRG00000008387) FOXC1 (ENSSMRG00000008390) GMDS (ENSSMRG00000008413) #31 MYLK4 (ENSSMRG00000008475) #30 WRNIP1 (ENSSMRG00000008479) #29 ENSSMRG00000008497 ENSSMRG00000008565 Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 15 ENSPMRG00000005274 LYRM4 (ENSPMRG00000005276) #9 PPP1R3G (ENSPMRG00000005280) RPP40 (ENSPMRG00000005289) #11 ENSPMRG00000005303 #10 ECI2 (ENSPMRG00000005317) #14 ENSPMRG00000005331 #15 ENSPMRG00000005337 #16 PRPF4B (ENSPMRG00000005348) #17 PXDC1 (ENSPMRG00000005377) #19 SLC22A23 (ENSPMRG00000005395) #20 PSMG4 (ENSPMRG00000005411) #21 ENSPMRG00000005418 #22 ENSPMRG00000005422 #22 ENSPMRG00000005427 #22 ENSPMRG00000005443 #22 BPHL (ENSPMRG00000005453) #23 RIPK1 (ENSPMRG00000005461) #24 DUSP22 (ENSPMRG00000005470) ENSPMRG00000005486 IRF4 (ENSPMRG00000005490) EXOC2 (ENSPMRG00000005505) FOXQ1 (ENSPMRG00000005547) FOXF2 (ENSPMRG00000005550) FOXC1 (ENSPMRG00000005555) GMDS (ENSPMRG00000005558) #31 ENSPMRG00000005567 MYLK4 (ENSPMRG00000005583) #30 WRNIP1 (ENSPMRG00000005616) #29 SERPINB1 (ENSPMRG00000005641) #28 SERPINB8 (ENSPMRG00000005773) Common wall lizard MODERN SPECIES 15 ENSPMRG00000005272 ENSPMRG00000005274 LYRM4 (ENSPMRG00000005276) #9 PPP1R3G (ENSPMRG00000005280) RPP40 (ENSPMRG00000005289) #11 ENSPMRG00000005303 #10 ECI2 (ENSPMRG00000005317) #14 ENSPMRG00000005331 #15 ENSPMRG00000005337 #16 PRPF4B (ENSPMRG00000005348) #17 PXDC1 (ENSPMRG00000005377) #19 SLC22A23 (ENSPMRG00000005395) #20 PSMG4 (ENSPMRG00000005411) #21 ENSPMRG00000005418 #22 ENSPMRG00000005422 #22 ENSPMRG00000005427 #22 ENSPMRG00000005443 #22 BPHL (ENSPMRG00000005453) #23 RIPK1 (ENSPMRG00000005461) #24 DUSP22 (ENSPMRG00000005470) ENSPMRG00000005486 IRF4 (ENSPMRG00000005490) EXOC2 (ENSPMRG00000005505) FOXQ1 (ENSPMRG00000005547) FOXF2 (ENSPMRG00000005550) FOXC1 (ENSPMRG00000005555) GMDS (ENSPMRG00000005558) #31 ENSPMRG00000005567 MYLK4 (ENSPMRG00000005583) #30 WRNIP1 (ENSPMRG00000005616) #29 SERPINB1 (ENSPMRG00000005641) #28 Common wall lizard MODERN SPECIES 15 NRN1 (ENSPMRG00000005263) #7 FARS2 (ENSPMRG00000005269) #8 ENSPMRG00000005272 ENSPMRG00000005274 LYRM4 (ENSPMRG00000005276) #9 PPP1R3G (ENSPMRG00000005280) RPP40 (ENSPMRG00000005289) #11 ENSPMRG00000005303 #10 ECI2 (ENSPMRG00000005317) #14 ENSPMRG00000005331 #15 ENSPMRG00000005337 #16 PRPF4B (ENSPMRG00000005348) #17 PXDC1 (ENSPMRG00000005377) #19 SLC22A23 (ENSPMRG00000005395) #20 PSMG4 (ENSPMRG00000005411) #21 ENSPMRG00000005418 #22 ENSPMRG00000005422 #22 ENSPMRG00000005427 #22 ENSPMRG00000005443 #22 BPHL (ENSPMRG00000005453) #23 RIPK1 (ENSPMRG00000005461) #24 DUSP22 (ENSPMRG00000005470) ENSPMRG00000005486 IRF4 (ENSPMRG00000005490) EXOC2 (ENSPMRG00000005505) FOXQ1 (ENSPMRG00000005547) FOXF2 (ENSPMRG00000005550) FOXC1 (ENSPMRG00000005555) GMDS (ENSPMRG00000005558) #31 ENSPMRG00000005567 MYLK4 (ENSPMRG00000005583) #30 Common wall lizard MODERN SPECIES 15 FARS2 (ENSPMRG00000005269) #8 ENSPMRG00000005272 ENSPMRG00000005274 LYRM4 (ENSPMRG00000005276) #9 PPP1R3G (ENSPMRG00000005280) RPP40 (ENSPMRG00000005289) #11 ENSPMRG00000005303 #10 ECI2 (ENSPMRG00000005317) #14 ENSPMRG00000005331 #15 ENSPMRG00000005337 #16 PRPF4B (ENSPMRG00000005348) #17 PXDC1 (ENSPMRG00000005377) #19 SLC22A23 (ENSPMRG00000005395) #20 PSMG4 (ENSPMRG00000005411) #21 ENSPMRG00000005418 #22 ENSPMRG00000005422 #22 ENSPMRG00000005427 #22 ENSPMRG00000005443 #22 BPHL (ENSPMRG00000005453) #23 RIPK1 (ENSPMRG00000005461) #24 DUSP22 (ENSPMRG00000005470) ENSPMRG00000005486 IRF4 (ENSPMRG00000005490) EXOC2 (ENSPMRG00000005505) FOXQ1 (ENSPMRG00000005547) FOXF2 (ENSPMRG00000005550) FOXC1 (ENSPMRG00000005555) GMDS (ENSPMRG00000005558) #31 ENSPMRG00000005567 MYLK4 (ENSPMRG00000005583) #30 WRNIP1 (ENSPMRG00000005616) #29 tuatara DUPLICATION tuatara MODERN SPECIES 1207 ENSSPUG00000007673 TONSL (ENSSPUG00000007765) VPS28 (ENSSPUG00000007986) ENSSPUG00000008009 #22 ENSSPUG00000008038 tuatara MODERN SPECIES 1313 ENSSPUG00000017487 #11 ENSSPUG00000017443 #10 ECI2 (ENSSPUG00000017412) #14 PRPF4B (ENSSPUG00000017391) #17 ENSSPUG00000017379 PXDC1 (ENSSPUG00000017370) #19 SLC22A23 (ENSSPUG00000017354) #20 PSMG4 (ENSSPUG00000017345) #21 ENSSPUG00000017341 ENSSPUG00000017336 #22 BPHL (ENSSPUG00000017311) #23 RIPK1 (ENSSPUG00000017287) #24 DUSP22 (ENSSPUG00000017277) IRF4 (ENSSPUG00000017270) EXOC2 (ENSSPUG00000017253) ENSSPUG00000017190 #31 ENSSPUG00000017087 #31 MYLK4 (ENSSPUG00000017045) #30 WRNIP1 (ENSSPUG00000017030) #29 ENSSPUG00000017023 #28 ENSSPUG00000017016 ENSSPUG00000017008 ENSSPUG00000015731 SERPINB10 (ENSSPUG00000015442) ENSSPUG00000015437