Rodentia	ANCESTRAL SPECIES	6	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872
Myomorpha	ANCESTRAL SPECIES	11	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872
Muroidea	ANCESTRAL SPECIES	15	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q #12	ENSGT00940000155105.r #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154519.g.b.a #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b
Murinae	ANCESTRAL SPECIES	21	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q #12	ENSGT00940000155105.r #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154573.k.b #30	ENSGT00940000154931.d.o.a.b #31	ENSGT00940000154931.d.o.a.a #32	ENSGT00940000154519.g.b.a.b #33	ENSGT00940000154573.l ##34	ENSGT00940000154573.k.a #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b
Rat	DUPLICATION
Rat	MODERN SPECIES	8	Fars2 (ENSRNOG00000016135) #7	Lyrm4 (ENSRNOG00000047970) #8	Ppp1r3g (ENSRNOG00000016222) #9	Rpp40 (ENSRNOG00000016226) #10	Cdyl (ENSRNOG00000032215) #11	Eci2 (ENSRNOG00000066714) #12	Eci3 (ENSRNOG00000029549) #13	Tex56p (ENSRNOG00000033763) #14	Fam217a (ENSRNOG00000016672) #15	Prpf4b (ENSRNOG00000016705) #16	Fam50b (ENSRNOG00000017083) #17	Pxdc1 (ENSRNOG00000017093) #18	Slc22a23 (ENSRNOG00000017210) #19	Psmg4 (ENSRNOG00000039265) #20	Tubb2a (ENSRNOG00000017558) #21	Tubb2b (ENSRNOG00000017445) #22	Bphl (ENSRNOG00000017577) #23	Ripk1 (ENSRNOG00000017787) #24	Serpinb6a (ENSRNOG00000017962) #25	Nqo2 (ENSRNOG00000017820) #26	RGD1564786 (ENSRNOG00000063990) #27	Serpinb6e (ENSRNOG00000070025) #28	Serpinb9d (ENSRNOG00000022139) #29	Serpinb1b (ENSRNOG00000034229) #30	RGD1562844 (ENSRNOG00000048576) #31	Serpinb9 (ENSRNOG00000033772) #32	Serpinb6b (ENSRNOG00000016420) #33	Serpinb1a (ENSRNOG00000016581) #34	Wrnip1 (ENSRNOG00000017040) #35	ENSRNOG00000063699 #36	Mylk4 (ENSRNOG00000070083) #37
Rat	MODERN SPECIES	8	Nrn1 (ENSRNOG00000050767)	Fars2 (ENSRNOG00000016135) #7	Lyrm4 (ENSRNOG00000047970) #8	Ppp1r3g (ENSRNOG00000016222) #9	Rpp40 (ENSRNOG00000016226) #10	Cdyl (ENSRNOG00000032215) #11	Eci2 (ENSRNOG00000066714) #12	Eci3 (ENSRNOG00000029549) #13	Tex56p (ENSRNOG00000033763) #14	Fam217a (ENSRNOG00000016672) #15	Prpf4b (ENSRNOG00000016705) #16	Fam50b (ENSRNOG00000017083) #17	Pxdc1 (ENSRNOG00000017093) #18	Slc22a23 (ENSRNOG00000017210) #19	Psmg4 (ENSRNOG00000039265) #20	Tubb2a (ENSRNOG00000017558) #21	Tubb2b (ENSRNOG00000017445) #22	Bphl (ENSRNOG00000017577) #23	Ripk1 (ENSRNOG00000017787) #24	Serpinb6a (ENSRNOG00000017962) #25	Nqo2 (ENSRNOG00000017820) #26	RGD1564786 (ENSRNOG00000063990) #27	Serpinb6e (ENSRNOG00000070025) #28	Serpinb9d (ENSRNOG00000022139) #29	Serpinb1b (ENSRNOG00000034229) #30	RGD1562844 (ENSRNOG00000048576) #31	Serpinb9 (ENSRNOG00000033772) #32	Serpinb6b (ENSRNOG00000016420) #33	Serpinb1a (ENSRNOG00000016581) #34	Wrnip1 (ENSRNOG00000017040) #35	ENSRNOG00000063699 #36
Mus	ANCESTRAL SPECIES	18	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q.a #12	ENSGT00940000155105.q.b #12	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154519.g.b.a.a.a.a ##33	ENSGT00940000154519.g.b.a.a.b.a #28	ENSGT00940000154519.g.b.a.a.a.b.a ##33	ENSGT00940000154931.d.o.b #29	ENSGT00940000154931.d.p ##32	ENSGT00940000154931.d.o.a.a #32	ENSGT00940000154519.g.b.a.b #33	ENSGT00940000154931.d.o.a.b #31	ENSGT00940000154573.k.b #30	ENSGT00940000154573.k.a #34	ENSGT01000000215059 #36
Mus_A	ANCESTRAL SPECIES	14	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q.a #12	ENSGT00940000155105.q.b #12	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154519.g.b.a.a.a.a ##33	ENSGT00940000154519.g.a ##33	ENSGT00940000154931.d.o.a.a #32	ENSGT00940000154519.g.b.a.b #33	ENSGT00940000154573.l ##34	ENSGT00940000154931.d.o.a.b #31	ENSGT00940000154573.k.b #30	ENSGT00940000154573.k.a #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37
Ryukyu mouse	MODERN SPECIES	4	Nrn1 (MGP_CAROLIEiJ_G0018433)	Fars2 (MGP_CAROLIEiJ_G0018432) #7	Lyrm4 (MGP_CAROLIEiJ_G0018431) #8	Ppp1r3g (MGP_CAROLIEiJ_G0018430) #9	Rpp40 (MGP_CAROLIEiJ_G0018429) #10	Cdyl (MGP_CAROLIEiJ_G0018428) #11	Eci2 (MGP_CAROLIEiJ_G0018427) #12	Eci3 (MGP_CAROLIEiJ_G0018426) #12	Tex56 (MGP_CAROLIEiJ_G0018425) #14	MGP_CAROLIEiJ_G0018424 #15	Prpf4b (MGP_CAROLIEiJ_G0018423) #16	Fam50b (MGP_CAROLIEiJ_G0018422) #17	Pxdc1 (MGP_CAROLIEiJ_G0018421) #18	Slc22a23 (MGP_CAROLIEiJ_G0018420) #19	Psmg4 (MGP_CAROLIEiJ_G0018419) #20	MGP_CAROLIEiJ_G0018418 #22	Bphl (MGP_CAROLIEiJ_G0018417) #23	Ripk1 (MGP_CAROLIEiJ_G0018416) #24	Nqo2 (MGP_CAROLIEiJ_G0018415) #26	Serpinb6a (MGP_CAROLIEiJ_G0018414) #25	Serpinb6c (MGP_CAROLIEiJ_G0018413) ##33	MGP_CAROLIEiJ_G0018412 ##33	MGP_CAROLIEiJ_G0018411 #29	MGP_CAROLIEiJ_G0018410 #29	MGP_CAROLIEiJ_G0018409 #29	Serpinb9 (MGP_CAROLIEiJ_G0018408) #32	Serpinb6b (MGP_CAROLIEiJ_G0018407) #33	MGP_CAROLIEiJ_G0018406 #30	Serpinb1a (MGP_CAROLIEiJ_G0018405) #34	MGP_CAROLIEiJ_G0018404 #36	Wrnip1 (MGP_CAROLIEiJ_G0018403) #35
Mus_B	ANCESTRAL SPECIES	13	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q.a #12	ENSGT00940000155105.q.b #12	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154519.g.b.a.a.a.a ##33	ENSGT00940000154519.g.b.a.a.b.a #28	ENSGT00940000154519.g.b.a.a.a.b.a ##33	ENSGT00940000154931.d.o.b.a.a #29	ENSGT00940000154931.d.o.b.b #29	ENSGT00940000154931.d.p ##32	ENSGT00940000154573.k.b #30	ENSGT00940000154931.d.o.a.b #31	ENSGT00940000154931.d.o.a.a #32	ENSGT00940000154519.g.b.a.b #33	ENSGT00940000154573.l ##34
Mouse	DUPLICATION
Mouse	MODERN SPECIES	4	Nrn1 (ENSMUSG00000039114)	Fars2 (ENSMUSG00000021420) #7	Lyrm4 (ENSMUSG00000046573) #8	Ppp1r3g (ENSMUSG00000050423) #9	Rpp40 (ENSMUSG00000021418) #10	Cdyl (ENSMUSG00000059288) #11	Eci2 (ENSMUSG00000021417) #12	Eci3 (ENSMUSG00000021416) #12	Tex56 (ENSMUSG00000021415) #14	Fam217a (ENSMUSG00000021414) #15	Prpf4b (ENSMUSG00000021413) #16	Fam50b (ENSMUSG00000038246) #17	Pxdc1 (ENSMUSG00000021411) #18	Slc22a23 (ENSMUSG00000038267) #19	Psmg4 (ENSMUSG00000071451) #20	Tubb2b (ENSMUSG00000045136) #22	Tubb2a (ENSMUSG00000058672) #22	Bphl (ENSMUSG00000038286) #23	Ripk1 (ENSMUSG00000021408) #24	Nqo2 (ENSMUSG00000046949) #26	Serpinb6a (ENSMUSG00000060147) #25	Serpinb6c (ENSMUSG00000052180) ##33	Serpinb6e (ENSMUSG00000069248) #28	Serpinb6d (ENSMUSG00000047889) ##33	Serpinb9g (ENSMUSG00000057726) #29	Serpinb9h (ENSMUSG00000071452) #29	Serpinb9f (ENSMUSG00000038327) #29	Serpinb9e (ENSMUSG00000062342) #29	Serpinb9d (ENSMUSG00000054266) #29	Serpinb9c (ENSMUSG00000021404) ##32	Serpinb1b (ENSMUSG00000051029) #30
Mouse	MODERN SPECIES	4	Fars2 (ENSMUSG00000021420) #7	Lyrm4 (ENSMUSG00000046573) #8	Ppp1r3g (ENSMUSG00000050423) #9	Rpp40 (ENSMUSG00000021418) #10	Cdyl (ENSMUSG00000059288) #11	Eci2 (ENSMUSG00000021417) #12	Eci3 (ENSMUSG00000021416) #12	Tex56 (ENSMUSG00000021415) #14	Fam217a (ENSMUSG00000021414) #15	Prpf4b (ENSMUSG00000021413) #16	Fam50b (ENSMUSG00000038246) #17	Pxdc1 (ENSMUSG00000021411) #18	Slc22a23 (ENSMUSG00000038267) #19	Psmg4 (ENSMUSG00000071451) #20	Tubb2b (ENSMUSG00000045136) #22	Tubb2a (ENSMUSG00000058672) #22	Bphl (ENSMUSG00000038286) #23	Ripk1 (ENSMUSG00000021408) #24	Nqo2 (ENSMUSG00000046949) #26	Serpinb6a (ENSMUSG00000060147) #25	Serpinb6c (ENSMUSG00000052180) ##33	Serpinb6e (ENSMUSG00000069248) #28	Serpinb6d (ENSMUSG00000047889) ##33	Serpinb9g (ENSMUSG00000057726) #29	Serpinb9h (ENSMUSG00000071452) #29	Serpinb9f (ENSMUSG00000038327) #29	Serpinb9e (ENSMUSG00000062342) #29	Serpinb9d (ENSMUSG00000054266) #29	Serpinb9c (ENSMUSG00000021404) ##32	Serpinb1b (ENSMUSG00000051029) #30	Serpinb9b (ENSMUSG00000021403) #31
Mus_C	ANCESTRAL SPECIES	10	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q.a #12	ENSGT00940000155105.q.b #12	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #25	ENSGT00940000154519.g.b.a.a.a.a ##33	ENSGT00940000154519.g.b.a.a.b.a #28	ENSGT00940000154519.g.b.a.a.a.b.a ##33	ENSGT00940000154931.d.o.b.a.a #29	ENSGT00940000154931.d.o.b.a.b #29	ENSGT00940000154931.d.o.b.b #29	ENSGT00940000154931.d.p ##32	ENSGT00940000154573.k.b #30	ENSGT00940000154931.d.o.a.b #31	ENSGT00940000154931.d.o.a.a #32	ENSGT00940000154519.g.b.a.b #33
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2870															Btbd3 (ENSMSIG00000003269)	ENSMSIG00000003305 #22	ENSMSIG00000003421
Steppe mouse	MODERN SPECIES	2975							ENSMSIG00000002713 #12	Tex56 (ENSMSIG00000002912) #14	Fam217a (ENSMSIG00000002942) #15	Prpf4b (ENSMSIG00000003035) #16	ENSMSIG00000003077	Fam50b (ENSMSIG00000003082) #17	Pxdc1 (ENSMSIG00000003089) #18	Slc22a23 (ENSMSIG00000003104) #19	Psmg4 (ENSMSIG00000003186) #20	Tubb2a (ENSMSIG00000003218) #22	Bphl (ENSMSIG00000003262) #23	Ripk1 (ENSMSIG00000003307) #24	Nqo2 (ENSMSIG00000003346) #26	Serpinb6a (ENSMSIG00000003400) #25	Serpinb6c (ENSMSIG00000003508) ##33	Serpinb6e (ENSMSIG00000003547) #28	Serpinb6d (ENSMSIG00000003590) ##33
spretus	DUPLICATION
spretus	DUPLICATION
spretus	MODERN SPECIES	4	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #12	MGP_SPRETEiJ_G0019302 #12	Tex56 (MGP_SPRETEiJ_G0019301) #14	MGP_SPRETEiJ_G0019300 #15	Prpf4b (MGP_SPRETEiJ_G0019299) #16	Fam50b (MGP_SPRETEiJ_G0019298) #17	Pxdc1 (MGP_SPRETEiJ_G0019297) #18	Slc22a23 (MGP_SPRETEiJ_G0019296) #19	Psmg4 (MGP_SPRETEiJ_G0019295) #20	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #25	Serpinb6c (MGP_SPRETEiJ_G0019287) ##33	MGP_SPRETEiJ_G0019286 ##33	Serpinb6d (MGP_SPRETEiJ_G0019285) ##33	MGP_SPRETEiJ_G0019284 #29	MGP_SPRETEiJ_G0019283 #29	MGP_SPRETEiJ_G0019282 #29	MGP_SPRETEiJ_G0019281 #29	MGP_SPRETEiJ_G0019280 #29	Serpinb9c (MGP_SPRETEiJ_G0019279) ##32	MGP_SPRETEiJ_G0019278 ##32	Serpinb9 (MGP_SPRETEiJ_G0019277) #32
spretus	MODERN SPECIES	4	Cdyl (MGP_SPRETEiJ_G0019308) #11	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #12	MGP_SPRETEiJ_G0019302 #12	Tex56 (MGP_SPRETEiJ_G0019301) #14	MGP_SPRETEiJ_G0019300 #15	Prpf4b (MGP_SPRETEiJ_G0019299) #16	Fam50b (MGP_SPRETEiJ_G0019298) #17	Pxdc1 (MGP_SPRETEiJ_G0019297) #18	Slc22a23 (MGP_SPRETEiJ_G0019296) #19	Psmg4 (MGP_SPRETEiJ_G0019295) #20	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #25	Serpinb6c (MGP_SPRETEiJ_G0019287) ##33	MGP_SPRETEiJ_G0019286 ##33	Serpinb6d (MGP_SPRETEiJ_G0019285) ##33	MGP_SPRETEiJ_G0019284 #29	MGP_SPRETEiJ_G0019283 #29	MGP_SPRETEiJ_G0019282 #29	MGP_SPRETEiJ_G0019281 #29	MGP_SPRETEiJ_G0019280 #29	Serpinb9c (MGP_SPRETEiJ_G0019279) ##32	MGP_SPRETEiJ_G0019278 ##32
spretus	MODERN SPECIES	4	Rpp40 (MGP_SPRETEiJ_G0019309) #10	Cdyl (MGP_SPRETEiJ_G0019308) #11	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #12	MGP_SPRETEiJ_G0019302 #12	Tex56 (MGP_SPRETEiJ_G0019301) #14	MGP_SPRETEiJ_G0019300 #15	Prpf4b (MGP_SPRETEiJ_G0019299) #16	Fam50b (MGP_SPRETEiJ_G0019298) #17	Pxdc1 (MGP_SPRETEiJ_G0019297) #18	Slc22a23 (MGP_SPRETEiJ_G0019296) #19	Psmg4 (MGP_SPRETEiJ_G0019295) #20	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #25	Serpinb6c (MGP_SPRETEiJ_G0019287) ##33	MGP_SPRETEiJ_G0019286 ##33	Serpinb6d (MGP_SPRETEiJ_G0019285) ##33	MGP_SPRETEiJ_G0019284 #29	MGP_SPRETEiJ_G0019283 #29	MGP_SPRETEiJ_G0019282 #29	MGP_SPRETEiJ_G0019281 #29	MGP_SPRETEiJ_G0019280 #29	Serpinb9c (MGP_SPRETEiJ_G0019279) ##32
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	7	Fars2 (MGP_PahariEiJ_G0019500) #7	Lyrm4 (MGP_PahariEiJ_G0019499) #8	Ppp1r3g (MGP_PahariEiJ_G0019498) #9	Rpp40 (MGP_PahariEiJ_G0019497) #10	Cdyl (MGP_PahariEiJ_G0019496) #11	Eci2 (MGP_PahariEiJ_G0019495) #12	Eci3 (MGP_PahariEiJ_G0019494) #12	Tex56 (MGP_PahariEiJ_G0019493) #14	MGP_PahariEiJ_G0019492 #15	Prpf4b (MGP_PahariEiJ_G0019491) #16	Fam50b (MGP_PahariEiJ_G0019490) #17	Pxdc1 (MGP_PahariEiJ_G0019489) #18	Slc22a23 (MGP_PahariEiJ_G0019488) #19	Psmg4 (MGP_PahariEiJ_G0019487) #20	Tubb2b (MGP_PahariEiJ_G0019486) #22	MGP_PahariEiJ_G0019485 #22	Bphl (MGP_PahariEiJ_G0019484) #23	Ripk1 (MGP_PahariEiJ_G0019483) #24	Nqo2 (MGP_PahariEiJ_G0019482) #26	Serpinb6a (MGP_PahariEiJ_G0019481) #25	Serpinb6c (MGP_PahariEiJ_G0019480) ##33	Serpinb6e (MGP_PahariEiJ_G0019479) #28	Serpinb6d (MGP_PahariEiJ_G0019478) ##33	MGP_PahariEiJ_G0019477 #29	MGP_PahariEiJ_G0019476 #29	MGP_PahariEiJ_G0019475 #29	MGP_PahariEiJ_G0019474 #29	Serpinb9c (MGP_PahariEiJ_G0019473) ##32	Serpinb9 (MGP_PahariEiJ_G0019472) #32	Serpinb6b (MGP_PahariEiJ_G0019471) #33	MGP_PahariEiJ_G0019470 #30
Shrew mouse	MODERN SPECIES	7	Nrn1 (MGP_PahariEiJ_G0019501)	Fars2 (MGP_PahariEiJ_G0019500) #7	Lyrm4 (MGP_PahariEiJ_G0019499) #8	Ppp1r3g (MGP_PahariEiJ_G0019498) #9	Rpp40 (MGP_PahariEiJ_G0019497) #10	Cdyl (MGP_PahariEiJ_G0019496) #11	Eci2 (MGP_PahariEiJ_G0019495) #12	Eci3 (MGP_PahariEiJ_G0019494) #12	Tex56 (MGP_PahariEiJ_G0019493) #14	MGP_PahariEiJ_G0019492 #15	Prpf4b (MGP_PahariEiJ_G0019491) #16	Fam50b (MGP_PahariEiJ_G0019490) #17	Pxdc1 (MGP_PahariEiJ_G0019489) #18	Slc22a23 (MGP_PahariEiJ_G0019488) #19	Psmg4 (MGP_PahariEiJ_G0019487) #20	Tubb2b (MGP_PahariEiJ_G0019486) #22	MGP_PahariEiJ_G0019485 #22	Bphl (MGP_PahariEiJ_G0019484) #23	Ripk1 (MGP_PahariEiJ_G0019483) #24	Nqo2 (MGP_PahariEiJ_G0019482) #26	Serpinb6a (MGP_PahariEiJ_G0019481) #25	Serpinb6c (MGP_PahariEiJ_G0019480) ##33	Serpinb6e (MGP_PahariEiJ_G0019479) #28	Serpinb6d (MGP_PahariEiJ_G0019478) ##33	MGP_PahariEiJ_G0019477 #29	MGP_PahariEiJ_G0019476 #29	MGP_PahariEiJ_G0019475 #29	MGP_PahariEiJ_G0019474 #29	Serpinb9c (MGP_PahariEiJ_G0019473) ##32	Serpinb9 (MGP_PahariEiJ_G0019472) #32	Serpinb6b (MGP_PahariEiJ_G0019471) #33
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q #12	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #33	ENSGT00940000154519.g.b.a.d #33	ENSGT00940000154519.g.b.a.c.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q #12	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #33	ENSGT00940000154931.d.i #32	ENSGT00940000154519.g.b.a.c.b #33	ENSGT00940000154931.d.j #32	ENSGT00940000154573 #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	623	Fars2 (ENSMAUG00000008493) #7	Lyrm4 (ENSMAUG00000009051) #8	Rpp40 (ENSMAUG00000010268) #10	Cdyl (ENSMAUG00000011510) #11	ENSMAUG00000020164 #12	ENSMAUG00000001515 #13	Tex56 (ENSMAUG00000002707) #14	Fam217a (ENSMAUG00000004346) #15	Prpf4b (ENSMAUG00000007805) #16	ENSMAUG00000015060	Fam50b (ENSMAUG00000001407) #17	Pxdc1 (ENSMAUG00000016900) #18	Slc22a23 (ENSMAUG00000017453) #19	Psmg4 (ENSMAUG00000017755) #20	ENSMAUG00000018054 #22	Tubb2a (ENSMAUG00000018540) #22	Bphl (ENSMAUG00000000408) #23	Ripk1 (ENSMAUG00000000557) #24	Nqo2 (ENSMAUG00000000875) #26	ENSMAUG00000001093 #33	ENSMAUG00000001439 #32	ENSMAUG00000008075 #32	ENSMAUG00000009098 #33	ENSMAUG00000009345 #32	ENSMAUG00000009659 #34	Wrnip1 (ENSMAUG00000009914) #35	Mylk4 (ENSMAUG00000011053) #37	Gmds (ENSMAUG00000011976)	Foxc1 (ENSMAUG00000018460)	Foxf2 (ENSMAUG00000012470)	Foxq1 (ENSMAUG00000018519)
Golden Hamster	MODERN SPECIES	623	Nrn1 (ENSMAUG00000008121)	Fars2 (ENSMAUG00000008493) #7	Lyrm4 (ENSMAUG00000009051) #8	Rpp40 (ENSMAUG00000010268) #10	Cdyl (ENSMAUG00000011510) #11	ENSMAUG00000020164 #12	ENSMAUG00000001515 #13	Tex56 (ENSMAUG00000002707) #14	Fam217a (ENSMAUG00000004346) #15	Prpf4b (ENSMAUG00000007805) #16	ENSMAUG00000015060	Fam50b (ENSMAUG00000001407) #17	Pxdc1 (ENSMAUG00000016900) #18	Slc22a23 (ENSMAUG00000017453) #19	Psmg4 (ENSMAUG00000017755) #20	ENSMAUG00000018054 #22	Tubb2a (ENSMAUG00000018540) #22	Bphl (ENSMAUG00000000408) #23	Ripk1 (ENSMAUG00000000557) #24	Nqo2 (ENSMAUG00000000875) #26	ENSMAUG00000001093 #33	ENSMAUG00000001439 #32	ENSMAUG00000008075 #32	ENSMAUG00000009098 #33	ENSMAUG00000009345 #32	ENSMAUG00000009659 #34	Wrnip1 (ENSMAUG00000009914) #35	Mylk4 (ENSMAUG00000011053) #37	Gmds (ENSMAUG00000011976)	Foxc1 (ENSMAUG00000018460)	Foxf2 (ENSMAUG00000012470)
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	317	Nrn1 (ENSCGRG00001017665)	ENSCGRG00001012890	Fars2 (ENSCGRG00001022626) #7	Lyrm4 (ENSCGRG00001020406) #8	Ppp1r3g (ENSCGRG00001001814) #9	Rpp40 (ENSCGRG00001018328) #10	ENSCGRG00001013878	Cdyl (ENSCGRG00001002703) #11	ENSCGRG00001021795 #12	Fam217a (ENSCGRG00001020164) #15	Prpf4b (ENSCGRG00001019388) #16	Fam50b (ENSCGRG00001009274) #17	Pxdc1 (ENSCGRG00001021838) #18	Slc22a23 (ENSCGRG00001010789) #19	Psmg4 (ENSCGRG00001017753) #20	Tubb2b (ENSCGRG00001008382) #22	Tubb2a (ENSCGRG00001020515) #22	Bphl (ENSCGRG00001014124) #23	Ripk1 (ENSCGRG00001014419) #24	Nqo2 (ENSCGRG00001004425) #26	ENSCGRG00001015437 #33	ENSCGRG00001020665 #33	ENSCGRG00001022043 #32	ENSCGRG00001021359	ENSCGRG00001014514 #32	ENSCGRG00001009851	ENSCGRG00001000139 #34	ENSCGRG00001007544 #36	Wrnip1 (ENSCGRG00001020075) #35	Mylk4 (ENSCGRG00001012998) #37	ENSCGRG00001020761
Chinese hamster chok1gshd	MODERN SPECIES	317	ENSCGRG00001012890	Fars2 (ENSCGRG00001022626) #7	Lyrm4 (ENSCGRG00001020406) #8	Ppp1r3g (ENSCGRG00001001814) #9	Rpp40 (ENSCGRG00001018328) #10	ENSCGRG00001013878	Cdyl (ENSCGRG00001002703) #11	ENSCGRG00001021795 #12	Fam217a (ENSCGRG00001020164) #15	Prpf4b (ENSCGRG00001019388) #16	Fam50b (ENSCGRG00001009274) #17	Pxdc1 (ENSCGRG00001021838) #18	Slc22a23 (ENSCGRG00001010789) #19	Psmg4 (ENSCGRG00001017753) #20	Tubb2b (ENSCGRG00001008382) #22	Tubb2a (ENSCGRG00001020515) #22	Bphl (ENSCGRG00001014124) #23	Ripk1 (ENSCGRG00001014419) #24	Nqo2 (ENSCGRG00001004425) #26	ENSCGRG00001015437 #33	ENSCGRG00001020665 #33	ENSCGRG00001022043 #32	ENSCGRG00001021359	ENSCGRG00001014514 #32	ENSCGRG00001009851	ENSCGRG00001000139 #34	ENSCGRG00001007544 #36	Wrnip1 (ENSCGRG00001020075) #35	Mylk4 (ENSCGRG00001012998) #37	ENSCGRG00001020761	Gmds (ENSCGRG00001014163)
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105.q #12	ENSGT00940000155105.r #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #33	ENSGT00940000154519.g.b.a.d #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT01000000215059 #36	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b
Northern American deer mouse	MODERN SPECIES	18	Fars2 (ENSPEMG00000017477) #7	Lyrm4 (ENSPEMG00000030913) #8	Ppp1r3g (ENSPEMG00000014441) #9	Rpp40 (ENSPEMG00000020809) #10	Cdyl (ENSPEMG00000022690) #11	ENSPEMG00000021110 #12	ENSPEMG00000021161 #13	Tex56 (ENSPEMG00000020583) #14	Fam217a (ENSPEMG00000020354) #15	Prpf4b (ENSPEMG00000020358) #16	ENSPEMG00000031049	Fam50b (ENSPEMG00000024324) #17	Pxdc1 (ENSPEMG00000021893) #18	Slc22a23 (ENSPEMG00000020810) #19	Psmg4 (ENSPEMG00000020434) #20	Tubb2b (ENSPEMG00000008538) #22	ENSPEMG00000028800	Bphl (ENSPEMG00000020657) #23	Ripk1 (ENSPEMG00000014892) #24	Nqo2 (ENSPEMG00000022103) #26	ENSPEMG00000030940 #33	ENSPEMG00000006842 #33	ENSPEMG00000011189 #32	ENSPEMG00000029739 #33	ENSPEMG00000025946 #32	ENSPEMG00000007216 #32	ENSPEMG00000007226 #33	ENSPEMG00000024282 #32	ENSPEMG00000003771 #34	ENSPEMG00000030799 #36	Wrnip1 (ENSPEMG00000000543) #35
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	3	Nrn1 (ENSMOCG00000015236)	Fars2 (ENSMOCG00000021203) #7	Lyrm4 (ENSMOCG00000015484) #8	Ppp1r3g (ENSMOCG00000005122) #9	Rpp40 (ENSMOCG00000000305) #10	Cdyl (ENSMOCG00000012115) #11	ENSMOCG00000009658 #12	ENSMOCG00000006528 #13	Tex56 (ENSMOCG00000011556) #14	Fam217a (ENSMOCG00000021508) #15	Prpf4b (ENSMOCG00000022394) #16	Fam50b (ENSMOCG00000009994) #17	Pxdc1 (ENSMOCG00000020484) #18	Slc22a23 (ENSMOCG00000009539) #19	Psmg4 (ENSMOCG00000020506) #20	Tubb2b (ENSMOCG00000021829) #22	Tubb2a (ENSMOCG00000021775) #22	Bphl (ENSMOCG00000012434) #23	Ripk1 (ENSMOCG00000002677) #24	Nqo2 (ENSMOCG00000007454) #26	ENSMOCG00000000484 #33	ENSMOCG00000016676 #33	ENSMOCG00000019022	ENSMOCG00000011182 #33	ENSMOCG00000004352 #32	ENSMOCG00000010614 #32	ENSMOCG00000016281 #33	ENSMOCG00000000987 #32	ENSMOCG00000021377 #34	Wrnip1 (ENSMOCG00000002819) #35	ENSMOCG00000019965
Prairie vole	MODERN SPECIES	3	Fars2 (ENSMOCG00000021203) #7	Lyrm4 (ENSMOCG00000015484) #8	Ppp1r3g (ENSMOCG00000005122) #9	Rpp40 (ENSMOCG00000000305) #10	Cdyl (ENSMOCG00000012115) #11	ENSMOCG00000009658 #12	ENSMOCG00000006528 #13	Tex56 (ENSMOCG00000011556) #14	Fam217a (ENSMOCG00000021508) #15	Prpf4b (ENSMOCG00000022394) #16	Fam50b (ENSMOCG00000009994) #17	Pxdc1 (ENSMOCG00000020484) #18	Slc22a23 (ENSMOCG00000009539) #19	Psmg4 (ENSMOCG00000020506) #20	Tubb2b (ENSMOCG00000021829) #22	Tubb2a (ENSMOCG00000021775) #22	Bphl (ENSMOCG00000012434) #23	Ripk1 (ENSMOCG00000002677) #24	Nqo2 (ENSMOCG00000007454) #26	ENSMOCG00000000484 #33	ENSMOCG00000016676 #33	ENSMOCG00000019022	ENSMOCG00000011182 #33	ENSMOCG00000004352 #32	ENSMOCG00000010614 #32	ENSMOCG00000016281 #33	ENSMOCG00000000987 #32	ENSMOCG00000021377 #34	Wrnip1 (ENSMOCG00000002819) #35	ENSMOCG00000019965	Mylk4 (ENSMOCG00000014428) #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	764	Rreb1 (ENSNGAG00000021506)	Ly86 (ENSNGAG00000011116)	F13a1 (ENSNGAG00000022897)	Nrn1 (ENSNGAG00000018954)	Fars2 (ENSNGAG00000021589) #7	Lyrm4 (ENSNGAG00000024207) #8	ENSNGAG00000023955 #10	Cdyl (ENSNGAG00000023764) #11	ENSNGAG00000020575 #13	Prpf4b (ENSNGAG00000023322) #16	ENSNGAG00000009942	Fam50b (ENSNGAG00000024017) #17	Pxdc1 (ENSNGAG00000004640) #18	Slc22a23 (ENSNGAG00000021185) #19	Psmg4 (ENSNGAG00000016957) #20	Tubb2b (ENSNGAG00000021437) #22	Tubb2a (ENSNGAG00000020746) #22	Bphl (ENSNGAG00000024371) #23	Ripk1 (ENSNGAG00000010576) #24
Upper Galilee mountains blind mole rat	MODERN SPECIES	764	Ly86 (ENSNGAG00000011116)	F13a1 (ENSNGAG00000022897)	Nrn1 (ENSNGAG00000018954)	Fars2 (ENSNGAG00000021589) #7	Lyrm4 (ENSNGAG00000024207) #8	ENSNGAG00000023955 #10	Cdyl (ENSNGAG00000023764) #11	ENSNGAG00000020575 #13	Prpf4b (ENSNGAG00000023322) #16	ENSNGAG00000009942	Fam50b (ENSNGAG00000024017) #17	Pxdc1 (ENSNGAG00000004640) #18	Slc22a23 (ENSNGAG00000021185) #19	Psmg4 (ENSNGAG00000016957) #20	Tubb2b (ENSNGAG00000021437) #22	Tubb2a (ENSNGAG00000020746) #22	Bphl (ENSNGAG00000024371) #23	Ripk1 (ENSNGAG00000010576) #24
Lesser Egyptian jerboa	MODERN SPECIES	129	Ly86 (ENSJJAG00000022504)	F13a1 (ENSJJAG00000000070)	Nrn1 (ENSJJAG00000000725)	Fars2 (ENSJJAG00000002799) #7	Lyrm4 (ENSJJAG00000004657) #8	Rpp40 (ENSJJAG00000020629) #10	Cdyl (ENSJJAG00000000586) #11	ENSJJAG00000001626	ENSJJAG00000004231 #13	Tex56 (ENSJJAG00000008898) #14	ENSJJAG00000010338 #15	Prpf4b (ENSJJAG00000011217) #16	Pxdc1 (ENSJJAG00000012785) #18	Slc22a23 (ENSJJAG00000005711) #19	Psmg4 (ENSJJAG00000011408) #20	Tubb2b (ENSJJAG00000011739) #22	Bphl (ENSJJAG00000012949) #23	Ripk1 (ENSJJAG00000013771) #24	Nqo2 (ENSJJAG00000015012) #26	ENSJJAG00000015735 #33	ENSJJAG00000017382 #32	ENSJJAG00000010900 #34	Wrnip1 (ENSJJAG00000011299) #35	ENSJJAG00000013456 #37	Gmds (ENSJJAG00000015490)	ENSJJAG00000015833	Foxf2 (ENSJJAG00000017530)	ENSJJAG00000017878	Irf4 (ENSJJAG00000019182)	Dusp22 (ENSJJAG00000019867)
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	220															ENSDORG00000024731 #22	ENSDORG00000029362 #22
Kangaroo rat	MODERN SPECIES	220																ENSDORG00000024731 #22	ENSDORG00000029362 #22
Kangaroo rat	MODERN SPECIES	221																ENSDORG00000027765 #22
Kangaroo rat	MODERN SPECIES	351	Nqo2 (ENSDORG00000010390) #26	Ripk1 (ENSDORG00000010392) #24	ENSDORG00000029944 #10	ENSDORG00000011196 #10	ENSDORG00000028660	Cdyl (ENSDORG00000002812) #11	ENSDORG00000023689	ENSDORG00000004072 #13	Tex56 (ENSDORG00000024679) #14	ENSDORG00000025392	ENSDORG00000025074 #15	Prpf4b (ENSDORG00000000464) #16	Pxdc1 (ENSDORG00000029672) #18	Slc22a23 (ENSDORG00000010217) #19	ENSDORG00000010216 #20	Tubb2b (ENSDORG00000029767) #22	ENSDORG00000025335	ENSDORG00000030064 #22	Bphl (ENSDORG00000012891) #23	Lyrm4 (ENSDORG00000029399) #8	Fars2 (ENSDORG00000014796) #7	Nrn1 (ENSDORG00000028098)	F13a1 (ENSDORG00000005435)	Ly86 (ENSDORG00000009360)	Rreb1 (ENSDORG00000006979)	Ssr1 (ENSDORG00000009319)	Cage1 (ENSDORG00000004490)	Riok1 (ENSDORG00000008530)	Dsp (ENSDORG00000000359)	Snrnp48 (ENSDORG00000015140)	Bmp6 (ENSDORG00000004681)
Kangaroo rat	MODERN SPECIES	351	ENSDORG00000029944 #10	ENSDORG00000011196 #10	ENSDORG00000028660	Cdyl (ENSDORG00000002812) #11	ENSDORG00000023689	ENSDORG00000004072 #13	Tex56 (ENSDORG00000024679) #14	ENSDORG00000025392	ENSDORG00000025074 #15	Prpf4b (ENSDORG00000000464) #16	Pxdc1 (ENSDORG00000029672) #18	Slc22a23 (ENSDORG00000010217) #19	ENSDORG00000010216 #20	Tubb2b (ENSDORG00000029767) #22	ENSDORG00000025335	ENSDORG00000030064 #22	Bphl (ENSDORG00000012891) #23	Lyrm4 (ENSDORG00000029399) #8	Fars2 (ENSDORG00000014796) #7	Nrn1 (ENSDORG00000028098)	F13a1 (ENSDORG00000005435)	Ly86 (ENSDORG00000009360)	Rreb1 (ENSDORG00000006979)	Ssr1 (ENSDORG00000009319)	Cage1 (ENSDORG00000004490)	Riok1 (ENSDORG00000008530)	Dsp (ENSDORG00000000359)	Snrnp48 (ENSDORG00000015140)	Bmp6 (ENSDORG00000004681)	Txndc5 (ENSDORG00000004682)	ENSDORG00000027767
Rodentia_A	ANCESTRAL SPECIES	26	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.c.a.b ##32	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872
Sciuridae	ANCESTRAL SPECIES	1	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.c.a.b ##32	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00390000012138.a.b.t.ab	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005004818	MPLKIP (ENSSVLG00005004837)	SUGCT (ENSSVLG00005004898)	ENSSVLG00005005063	ENSSVLG00005005081	INHBA (ENSSVLG00005005151)	GLI3 (ENSSVLG00005005178)	C7orf25 (ENSSVLG00005005209)	PSMA2 (ENSSVLG00005005237)	MRPL32 (ENSSVLG00005005303)	ENSSVLG00005005320	HECW1 (ENSSVLG00005005468)	STK17A (ENSSVLG00005005990)	COA1 (ENSSVLG00005006028)	BLVRA (ENSSVLG00005006049)	ENSSVLG00005006086 #22	MRPS24 (ENSSVLG00005006180)	URGCP (ENSSVLG00005006226)	ENSSVLG00005006336	UBE2D4 (ENSSVLG00005006358)	DBNL (ENSSVLG00005006493)	PGAM2 (ENSSVLG00005006699)	POLM (ENSSVLG00005006728)	AEBP1 (ENSSVLG00005006770)	POLD2 (ENSSVLG00005006846)	MYL7 (ENSSVLG00005006900)	GCK (ENSSVLG00005006971)	ENSSVLG00005007143	CAMK2B (ENSSVLG00005007607)	NUDCD3 (ENSSVLG00005008781)	NPC1L1 (ENSSVLG00005008888)
Eurasian red squirrel	MODERN SPECIES	2	BDNF (ENSSVLG00005007577)	KIF18A (ENSSVLG00005007495)	ENSSVLG00005007473	METTL15 (ENSSVLG00005007460)	KCNA4 (ENSSVLG00005007441)	FSHB (ENSSVLG00005007418)	ARL14EP (ENSSVLG00005007404)	MPPED2 (ENSSVLG00005007385)	ENSSVLG00005007367	DCDC1 (ENSSVLG00005007148)	DNAJC24 (ENSSVLG00005007079)	IMMP1L (ENSSVLG00005007051)	ELP4 (ENSSVLG00005007005)	PAX6 (ENSSVLG00005006723)	ENSSVLG00005006643	ENSSVLG00005006612 #22	RCN1 (ENSSVLG00005006575)	ENSSVLG00005006549	WT1 (ENSSVLG00005006232)	EIF3M (ENSSVLG00005006089)	CCDC73 (ENSSVLG00005005944)	PRRG4 (ENSSVLG00005005895)	QSER1 (ENSSVLG00005005823)	DEPDC7 (ENSSVLG00005005722)	TCP11L1 (ENSSVLG00005005675)	CSTF3 (ENSSVLG00005005518)	ENSSVLG00005005475	HIPK3 (ENSSVLG00005005422)	KIAA1549L (ENSSVLG00005005254)	C11orf91 (ENSSVLG00005005211)	ENSSVLG00005005193
Eurasian red squirrel	MODERN SPECIES	16	NRN1 (ENSSVLG00005008393)	FARS2 (ENSSVLG00005008373) #7	ENSSVLG00005008346	LYRM4 (ENSSVLG00005008312) #8	PPP1R3G (ENSSVLG00005008297) #9	RPP40 (ENSSVLG00005008216) #10	CDYL (ENSSVLG00005008158) #11	ECI2 (ENSSVLG00005008033) #13	ENSSVLG00005007999 #14	ENSSVLG00005007911 #15	PRPF4B (ENSSVLG00005007879) #16	FAM50B (ENSSVLG00005007859) #17	PXDC1 (ENSSVLG00005007821) #18	SLC22A23 (ENSSVLG00005007747) #19	PSMG4 (ENSSVLG00005007683) #20	TUBB2B (ENSSVLG00005007652) #22	TUBB2A (ENSSVLG00005007615) #22	ENSSVLG00005007569 #23	RIPK1 (ENSSVLG00005007529) #24	NQO2 (ENSSVLG00005007475) #26	SERPINB6 (ENSSVLG00005007395) #33	ENSSVLG00005007366	ENSSVLG00005006719 #32	ENSSVLG00005006449 #32	SERPINB1 (ENSSVLG00005006417) #34	WRNIP1 (ENSSVLG00005006348) #35	ENSSVLG00005006323 #36	MYLK4 (ENSSVLG00005006200) #37	ENSSVLG00005006132	GMDS (ENSSVLG00005014861)	FOXC1 (ENSSVLG00005014837)
Eurasian red squirrel	MODERN SPECIES	16	FARS2 (ENSSVLG00005008373) #7	ENSSVLG00005008346	LYRM4 (ENSSVLG00005008312) #8	PPP1R3G (ENSSVLG00005008297) #9	RPP40 (ENSSVLG00005008216) #10	CDYL (ENSSVLG00005008158) #11	ECI2 (ENSSVLG00005008033) #13	ENSSVLG00005007999 #14	ENSSVLG00005007911 #15	PRPF4B (ENSSVLG00005007879) #16	FAM50B (ENSSVLG00005007859) #17	PXDC1 (ENSSVLG00005007821) #18	SLC22A23 (ENSSVLG00005007747) #19	PSMG4 (ENSSVLG00005007683) #20	TUBB2B (ENSSVLG00005007652) #22	TUBB2A (ENSSVLG00005007615) #22	ENSSVLG00005007569 #23	RIPK1 (ENSSVLG00005007529) #24	NQO2 (ENSSVLG00005007475) #26	SERPINB6 (ENSSVLG00005007395) #33	ENSSVLG00005007366	ENSSVLG00005006719 #32	ENSSVLG00005006449 #32	SERPINB1 (ENSSVLG00005006417) #34	WRNIP1 (ENSSVLG00005006348) #35	ENSSVLG00005006323 #36	MYLK4 (ENSSVLG00005006200) #37	ENSSVLG00005006132	GMDS (ENSSVLG00005014861)	FOXC1 (ENSSVLG00005014837)	FOXF2 (ENSSVLG00005014790)
Eurasian red squirrel	MODERN SPECIES	11	OR4Q3 (ENSSVLG00005002974)	ENSSVLG00005002963	ENSSVLG00005002955	ENSSVLG00005002945	ENSSVLG00005002922	ENSSVLG00005002909	ENSSVLG00005002897	ENSSVLG00005002883	OR11G2 (ENSSVLG00005002875)	ENSSVLG00005002866	OR11H6 (ENSSVLG00005002859)	OR11H4 (ENSSVLG00005002848)	TTC5 (ENSSVLG00005002830)	CCNB1IP1 (ENSSVLG00005002813)	PARP2 (ENSSVLG00005002754)	ENSSVLG00005002730 #22	TEP1 (ENSSVLG00005002176)	KLHL33 (ENSSVLG00005001900)	OSGEP (ENSSVLG00005001856)	APEX1 (ENSSVLG00005001829)	PIP4P1 (ENSSVLG00005001794)	PNP (ENSSVLG00005001773)	RNASE10 (ENSSVLG00005001759)	ENSSVLG00005001749	ENSSVLG00005001741	RNASE11 (ENSSVLG00005001735)	RNASE12 (ENSSVLG00005001727)	OR6S1 (ENSSVLG00005001715)	ANG (ENSSVLG00005001703)	RNASE4 (ENSSVLG00005001692)	ENSSVLG00005001670
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	37					ENSGT00390000000878.h.a	ENSGT00390000014833	ENSGT00940000164650	ENSGT00390000011295.b	ENSGT00940000155602	ENSGT00390000000118	ENSGT00950000183188.B	ENSGT00390000015035	ENSGT00940000154957.B	ENSGT00940000157167.n	ENSGT00940000153470.a.a.a.b.m.a	ENSGT00940000154150.gd.a #22	ENSGT00770000120611.B	ENSGT00390000007287	ENSGT00940000156475	ENSGT00940000158500	ENSGT00940000155880	ENSGT00940000155957	ENSGT00390000009405.a.a.a.b.a.b.a.b	ENSGT00390000015236	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a	ENSGT00940000157315
Marmotini_b	ANCESTRAL SPECIES	26					ENSGT00390000014833	ENSGT00390000011295.b	ENSGT00940000155602	ENSGT00390000000118	ENSGT00950000183188.B	ENSGT00390000015035	ENSGT00940000154957.B	ENSGT00940000157167.n	ENSGT01030000235027	ENSGT00940000154530.w	ENSGT00940000153470.a.a.a.b.m.a	ENSGT00940000154150.gd.a #22	ENSGT00770000120611.B	ENSGT00390000007287	ENSGT00940000156475	ENSGT00940000158500	ENSGT00940000155880	ENSGT00940000155957	ENSGT00390000009405.a.a.a.b.a.b.a.b	ENSGT00390000015236	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a	ENSGT00940000157315
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	78				TOMM7 (ENSSTOG00000008694)	HYCC1 (ENSSTOG00000027983)	KLHL7 (ENSSTOG00000008470)	NUP42 (ENSSTOG00000008486)	GPNMB (ENSSTOG00000008499)	MALSU1 (ENSSTOG00000027376)	IGF2BP3 (ENSSTOG00000008519)	TRA2A (ENSSTOG00000012073)	ENSSTOG00000030692	ENSSTOG00000032668	CCDC126 (ENSSTOG00000021255)	ENSSTOG00000029732	ENSSTOG00000020371 #22	ENSSTOG00000014113	ENSSTOG00000027960 #22	STK31 (ENSSTOG00000003577)	ENSSTOG00000033576	ENSSTOG00000021917	NPY (ENSSTOG00000020410)	PALS2 (ENSSTOG00000001908)	ENSSTOG00000014905	OSBPL3 (ENSSTOG00000001755)	C7orf31 (ENSSTOG00000008859)	NPVF (ENSSTOG00000008873)	NFE2L3 (ENSSTOG00000014758)	ENSSTOG00000006202	CBX3 (ENSSTOG00000006223)	SNX10 (ENSSTOG00000024131)
Squirrel	MODERN SPECIES	78	HOXA1 (ENSSTOG00000024209)	SKAP2 (ENSSTOG00000021247)	SNX10 (ENSSTOG00000024131)	CBX3 (ENSSTOG00000006223)	ENSSTOG00000006202	NFE2L3 (ENSSTOG00000014758)	NPVF (ENSSTOG00000008873)	C7orf31 (ENSSTOG00000008859)	OSBPL3 (ENSSTOG00000001755)	ENSSTOG00000014905	PALS2 (ENSSTOG00000001908)	NPY (ENSSTOG00000020410)	ENSSTOG00000021917	ENSSTOG00000033576	STK31 (ENSSTOG00000003577)	ENSSTOG00000027960 #22	ENSSTOG00000014113	ENSSTOG00000020371 #22	ENSSTOG00000029732	CCDC126 (ENSSTOG00000021255)	ENSSTOG00000032668	ENSSTOG00000030692	TRA2A (ENSSTOG00000012073)	IGF2BP3 (ENSSTOG00000008519)	MALSU1 (ENSSTOG00000027376)	GPNMB (ENSSTOG00000008499)	NUP42 (ENSSTOG00000008486)	KLHL7 (ENSSTOG00000008470)	HYCC1 (ENSSTOG00000027983)	TOMM7 (ENSSTOG00000008694)
Alpin marmot	MODERN SPECIES	26			ENSMMMG00000005021	ENSMMMG00000005025	TOMM7 (ENSMMMG00000005059)	ENSMMMG00000005078	HYCC1 (ENSMMMG00000005151)	ENSMMMG00000005220	KLHL7 (ENSMMMG00000005243)	NUP42 (ENSMMMG00000005252)	GPNMB (ENSMMMG00000005258)	MALSU1 (ENSMMMG00000005281)	IGF2BP3 (ENSMMMG00000005303)	TRA2A (ENSMMMG00000005330)	ENSMMMG00000005357	ENSMMMG00000005362 #22	ENSMMMG00000005429	STK31 (ENSMMMG00000005447)	ENSMMMG00000005635	NPY (ENSMMMG00000005649)	PALS2 (ENSMMMG00000005665)	GSDME (ENSMMMG00000005813)	OSBPL3 (ENSMMMG00000005837)	ENSMMMG00000006125	C7orf31 (ENSMMMG00000006134)	NPVF (ENSMMMG00000006151)	ENSMMMG00000006190	ENSMMMG00000006197	ENSMMMG00000006360	SNX10 (ENSMMMG00000006398)	ENSMMMG00000006429
Marmotini	ANCESTRAL SPECIES	37		ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000155450	ENSGT00390000001319	ENSGT00940000160556	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000154150.gd.b #22	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00730000111762	ENSGT01030000234607.A.a.b.a	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053
Marmotini_b	ANCESTRAL SPECIES	26															ENSGT00940000161703	ENSGT00940000154150.gd.b #22	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00730000111762	ENSGT01030000234607.A.a.b.a	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053
Arctic ground squirrel	MODERN SPECIES	499															ABCA13 (ENSUPAG00010000302)	ENSUPAG00010000185 #22	UPP1 (ENSUPAG00010000153)	SUN3 (ENSUPAG00010000131)	C7orf57 (ENSUPAG00010000060)	HUS1 (ENSUPAG00010000045)	PKD1L1 (ENSUPAG00010022631)
Squirrel	MODERN SPECIES	78															ENSSTOG00000032455	ENSSTOG00000026135 #22	UPP1 (ENSSTOG00000005502)	C7orf57 (ENSSTOG00000005482)	SUN3 (ENSSTOG00000005471)	HUS1 (ENSSTOG00000027204)	ENSSTOG00000005345	TNS3 (ENSSTOG00000015793)	IGFBP3 (ENSSTOG00000008762)	IGFBP1 (ENSSTOG00000008746)	ADCY1 (ENSSTOG00000008713)	ENSSTOG00000015205	RAMP3 (ENSSTOG00000025331)	ENSSTOG00000020680	TBRG4 (ENSSTOG00000008370)	NACAD (ENSSTOG00000022804)	CCM2 (ENSSTOG00000026702)
Alpin marmot	MODERN SPECIES	26	ENSMMMG00000015809	ENSMMMG00000015788	ENSMMMG00000015785	ENSMMMG00000015775	ENSMMMG00000015722	GRB10 (ENSMMMG00000015688)	DDC (ENSMMMG00000015645)	FIGNL1 (ENSMMMG00000015635)	IKZF1 (ENSMMMG00000015562)	SPATA48 (ENSMMMG00000015542)	ZPBP (ENSMMMG00000015506)	VWC2 (ENSMMMG00000015492)	ENSMMMG00000015482	ENSMMMG00000015465	ABCA13 (ENSMMMG00000015281)	ENSMMMG00000015221 #22	UPP1 (ENSMMMG00000015208)	C7orf57 (ENSMMMG00000015182)	SUN3 (ENSMMMG00000015174)	HUS1 (ENSMMMG00000015160)	PKD1L1 (ENSMMMG00000015029)	TNS3 (ENSMMMG00000014995)	ENSMMMG00000014987	ENSMMMG00000014980	ENSMMMG00000014975	IGFBP3 (ENSMMMG00000014868)	IGFBP1 (ENSMMMG00000014859)	ADCY1 (ENSMMMG00000014821)	RAMP3 (ENSMMMG00000014813)	ENSMMMG00000014809	ENSMMMG00000014801
Marmotini	ANCESTRAL SPECIES	40	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150.hd #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24
Alpin marmot	MODERN SPECIES	36	F13A1 (ENSMMMG00000014594)	NRN1 (ENSMMMG00000014586)	FARS2 (ENSMMMG00000014567) #7	LYRM4 (ENSMMMG00000014551) #8	PPP1R3G (ENSMMMG00000014548) #9	RPP40 (ENSMMMG00000014521) #10	CDYL (ENSMMMG00000014357) #11	ECI2 (ENSMMMG00000014301) #13	ENSMMMG00000014296 #14	FAM217A (ENSMMMG00000014281) #15	PRPF4B (ENSMMMG00000014263) #16	FAM50B (ENSMMMG00000014258) #17	ENSMMMG00000014254 #18	ENSMMMG00000014241	SLC22A23 (ENSMMMG00000014224) #19	TUBB2B (ENSMMMG00000014205) #22	BPHL (ENSMMMG00000014194) #23	RIPK1 (ENSMMMG00000014179) #24
Marmotini_b	ANCESTRAL SPECIES	68	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00390000015826.x	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150.hd #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	350		PPP1R3G (ENSUPAG00010010716) #9	RPP40 (ENSUPAG00010010701) #10	ENSUPAG00010010692	CDYL (ENSUPAG00010010685) #11	ECI2 (ENSUPAG00010010667) #13	ENSUPAG00010010661 #14	FAM217A (ENSUPAG00010010641) #15	PRPF4B (ENSUPAG00010010629) #16	FAM50B (ENSUPAG00010010626) #17	PXDC1 (ENSUPAG00010010623) #18	ENSUPAG00010010614	SLC22A23 (ENSUPAG00010010597) #19	PSMG4 (ENSUPAG00010010591) #20	ENSUPAG00010010587	TUBB2B (ENSUPAG00010010579) #22	ENSUPAG00010010577 #22	BPHL (ENSUPAG00010010568) #23	RIPK1 (ENSUPAG00010010546) #24
Arctic ground squirrel	MODERN SPECIES	350	PPP1R3G (ENSUPAG00010010716) #9	RPP40 (ENSUPAG00010010701) #10	ENSUPAG00010010692	CDYL (ENSUPAG00010010685) #11	ECI2 (ENSUPAG00010010667) #13	ENSUPAG00010010661 #14	FAM217A (ENSUPAG00010010641) #15	PRPF4B (ENSUPAG00010010629) #16	FAM50B (ENSUPAG00010010626) #17	PXDC1 (ENSUPAG00010010623) #18	ENSUPAG00010010614	SLC22A23 (ENSUPAG00010010597) #19	PSMG4 (ENSUPAG00010010591) #20	ENSUPAG00010010587	TUBB2B (ENSUPAG00010010579) #22	ENSUPAG00010010577 #22	BPHL (ENSUPAG00010010568) #23	RIPK1 (ENSUPAG00010010546) #24
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	134	ENSSTOG00000024647	FARS2 (ENSSTOG00000012156) #7	LYRM4 (ENSSTOG00000026736) #8	PPP1R3G (ENSSTOG00000021636) #9	RPP40 (ENSSTOG00000011199) #10	CDYL (ENSSTOG00000011187) #11	ECI2 (ENSSTOG00000004305) #13	ENSSTOG00000030065 #14	FAM217A (ENSSTOG00000030768) #15	PRPF4B (ENSSTOG00000004256) #16	FAM50B (ENSSTOG00000026905) #17	PXDC1 (ENSSTOG00000027169) #18	ENSSTOG00000030156	SLC22A23 (ENSSTOG00000031179) #19	PSMG4 (ENSSTOG00000020187) #20	TUBB2B (ENSSTOG00000022186) #22	TUBB2A (ENSSTOG00000024688) #22	BPHL (ENSSTOG00000001554) #23	RIPK1 (ENSSTOG00000001542) #24
Squirrel	MODERN SPECIES	134	FARS2 (ENSSTOG00000012156) #7	LYRM4 (ENSSTOG00000026736) #8	PPP1R3G (ENSSTOG00000021636) #9	RPP40 (ENSSTOG00000011199) #10	CDYL (ENSSTOG00000011187) #11	ECI2 (ENSSTOG00000004305) #13	ENSSTOG00000030065 #14	FAM217A (ENSSTOG00000030768) #15	PRPF4B (ENSSTOG00000004256) #16	FAM50B (ENSSTOG00000026905) #17	PXDC1 (ENSSTOG00000027169) #18	ENSSTOG00000030156	SLC22A23 (ENSSTOG00000031179) #19	PSMG4 (ENSSTOG00000020187) #20	TUBB2B (ENSSTOG00000022186) #22	TUBB2A (ENSSTOG00000024688) #22	BPHL (ENSSTOG00000001554) #23	RIPK1 (ENSSTOG00000001542) #24
Hystricomorpha	ANCESTRAL SPECIES	42	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT01000000215059 #36	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00940000162937.b	ENSGT00390000010872	ENSGT00940000159059
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000036093	ENSHGLG00000020343	ENSHGLG00000004389 #7	ENSHGLG00000038262	PPP1R3G (ENSHGLG00000041006) #9	ENSHGLG00000040678 #8	RPP40 (ENSHGLG00000004871) #10	ENSHGLG00000005262 #11	ENSHGLG00000038867	ECI2 (ENSHGLG00000005614) #13	PRPF4B (ENSHGLG00000005945) #16	FAM50B (ENSHGLG00000006289) #17	PXDC1 (ENSHGLG00000006650) #18	SLC22A23 (ENSHGLG00000007033) #19	ENSHGLG00000007366	TUBB2B (ENSHGLG00000007696) #22	ENSHGLG00000043950 #22	BPHL (ENSHGLG00000008018) #23	RIPK1 (ENSHGLG00000008330) #24	ENSHGLG00000045779 #26	SERPINB6 (ENSHGLG00000015274) #33	ENSHGLG00000017487 #32	SERPINB1 (ENSHGLG00000032738) #34	WRNIP1 (ENSHGLG00000014216) #35	ENSHGLG00000040911 #36	ENSHGLG00000014288 #37	ENSHGLG00000033368	GMDS (ENSHGLG00000014454)	FOXC1 (ENSHGLG00000040750)	FOXF2 (ENSHGLG00000007914)	FOXQ1 (ENSHGLG00000007951)
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000020343	ENSHGLG00000004389 #7	ENSHGLG00000038262	PPP1R3G (ENSHGLG00000041006) #9	ENSHGLG00000040678 #8	RPP40 (ENSHGLG00000004871) #10	ENSHGLG00000005262 #11	ENSHGLG00000038867	ECI2 (ENSHGLG00000005614) #13	PRPF4B (ENSHGLG00000005945) #16	FAM50B (ENSHGLG00000006289) #17	PXDC1 (ENSHGLG00000006650) #18	SLC22A23 (ENSHGLG00000007033) #19	ENSHGLG00000007366	TUBB2B (ENSHGLG00000007696) #22	ENSHGLG00000043950 #22	BPHL (ENSHGLG00000008018) #23	RIPK1 (ENSHGLG00000008330) #24	ENSHGLG00000045779 #26	SERPINB6 (ENSHGLG00000015274) #33	ENSHGLG00000017487 #32	SERPINB1 (ENSHGLG00000032738) #34	WRNIP1 (ENSHGLG00000014216) #35	ENSHGLG00000040911 #36	ENSHGLG00000014288 #37	ENSHGLG00000033368	GMDS (ENSHGLG00000014454)	FOXC1 (ENSHGLG00000040750)	FOXF2 (ENSHGLG00000007914)	FOXQ1 (ENSHGLG00000007951)	ENSHGLG00000044630
Hystricomorpha_a	ANCESTRAL SPECIES	48	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000157289.a #8	ENSGT00940000163747 #9	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000004735.B.b #17	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00390000010872	ENSGT00940000159059	ENSGT00940000157153	ENSGT01100000263474.a.b.b.f
Guinea pig	MODERN SPECIES	38	SSR1 (ENSCPOG00000039953)	RREB1 (ENSCPOG00000014380)	LY86 (ENSCPOG00000012001)	F13A1 (ENSCPOG00000005276)	NRN1 (ENSCPOG00000021547)	FARS2 (ENSCPOG00000003994) #7	LYRM4 (ENSCPOG00000038899) #8	RPP40 (ENSCPOG00000005855) #10	CDYL (ENSCPOG00000005847) #11	ECI2 (ENSCPOG00000004788) #13	PRPF4B (ENSCPOG00000004775) #16	FAM50B (ENSCPOG00000000148) #17	PXDC1 (ENSCPOG00000038768) #18	SLC22A23 (ENSCPOG00000010470) #19	PSMG4 (ENSCPOG00000026747) #20	TUBB2B (ENSCPOG00000039814) #22	BPHL (ENSCPOG00000036729) #23	RIPK1 (ENSCPOG00000005195) #24	NQO2 (ENSCPOG00000033205) #26	SERPINB6 (ENSCPOG00000008254) #33	ENSCPOG00000024499 #32	ENSCPOG00000040114 #32	ENSCPOG00000037377 #32	ENSCPOG00000021276 #32	ENSCPOG00000030607 #32
Hystricomorpha_b	ANCESTRAL SPECIES	58	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071 #7	ENSGT00940000170978	ENSGT00940000157289.a #8	ENSGT00390000014167 #10	ENSGT00940000155106 #11	ENSGT00940000155105 #13	ENSGT00390000008360 #14	ENSGT00940000154543.b #15	ENSGT00940000155562 #16	ENSGT00390000009209 #18	ENSGT00940000157354 #19	ENSGT00390000011804 #20	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #33	ENSGT00940000154931.d #32	ENSGT00940000154573 #34	ENSGT00390000008538 #35	ENSGT00940000156211.b #37	ENSGT00440000033640	ENSGT00940000162303.b	ENSGT00940000162527	ENSGT00390000010872	ENSGT00940000159059	ENSGT00940000157153
Degu	DUPLICATION
Degu	MODERN SPECIES	61	ENSODEG00000010547	PLEKHH2 (ENSODEG00000012982)	DYNC2LI1 (ENSODEG00000011054)	ABCG5 (ENSODEG00000010535)	ABCG8 (ENSODEG00000012555)	LRPPRC (ENSODEG00000011211)	ENSODEG00000019947	ENSODEG00000020039	ENSODEG00000011737	PPM1B (ENSODEG00000012106)	SLC3A1 (ENSODEG00000011768)	PREPL (ENSODEG00000012834)	ENSODEG00000019894	ENSODEG00000019899	CAMKMT (ENSODEG00000013111)	ENSODEG00000019927 #22	ENSODEG00000019924	SIX3 (ENSODEG00000011611)	SIX2 (ENSODEG00000011970)	ENSODEG00000012336	SRBD1 (ENSODEG00000012095)	PRKCE (ENSODEG00000011779)	EPAS1 (ENSODEG00000011675)	RHOQ (ENSODEG00000012565)	ENSODEG00000013963	ENSODEG00000011714	SOCS5 (ENSODEG00000019978)	ENSODEG00000011724	TTC7A (ENSODEG00000011584)	STPG4 (ENSODEG00000012221)	CALM2 (ENSODEG00000013273)
Degu	MODERN SPECIES	64	NRN1 (ENSODEG00000006426)	FARS2 (ENSODEG00000006881) #7	ENSODEG00000019555	LYRM4 (ENSODEG00000005678) #8	ENSODEG00000006170 #10	CDYL (ENSODEG00000006073) #11	ENSODEG00000019345	ECI2 (ENSODEG00000007068) #13	FAM217A (ENSODEG00000006489) #15	PRPF4B (ENSODEG00000006156) #16	PXDC1 (ENSODEG00000006864) #18	SLC22A23 (ENSODEG00000007173) #19	PSMG4 (ENSODEG00000006109) #20	ENSODEG00000006987 #22	ENSODEG00000006037	TUBB2A (ENSODEG00000006689) #22	BPHL (ENSODEG00000008397) #23	RIPK1 (ENSODEG00000007668) #24	NQO2 (ENSODEG00000006400) #26	SERPINB6 (ENSODEG00000008291) #33	ENSODEG00000006244 #32	ENSODEG00000006648	ENSODEG00000006906 #32	SERPINB1 (ENSODEG00000010241) #34	WRNIP1 (ENSODEG00000006805) #35	MYLK4 (ENSODEG00000006897) #37	GMDS (ENSODEG00000009960)	ENSODEG00000007557	FOXC1 (ENSODEG00000006912)	FOXF2 (ENSODEG00000007607)	EXOC2 (ENSODEG00000006797)
Degu	DUPLICATION
Degu	MODERN SPECIES	64	LY86 (ENSODEG00000005843)	F13A1 (ENSODEG00000006301)	NRN1 (ENSODEG00000006426)	FARS2 (ENSODEG00000006881) #7	ENSODEG00000019555	LYRM4 (ENSODEG00000005678) #8	ENSODEG00000006170 #10	CDYL (ENSODEG00000006073) #11	ENSODEG00000019345	ECI2 (ENSODEG00000007068) #13	FAM217A (ENSODEG00000006489) #15	PRPF4B (ENSODEG00000006156) #16	PXDC1 (ENSODEG00000006864) #18	SLC22A23 (ENSODEG00000007173) #19	PSMG4 (ENSODEG00000006109) #20	ENSODEG00000006987 #22	ENSODEG00000006037	TUBB2A (ENSODEG00000006689) #22	BPHL (ENSODEG00000008397) #23	RIPK1 (ENSODEG00000007668) #24	NQO2 (ENSODEG00000006400) #26	SERPINB6 (ENSODEG00000008291) #33	ENSODEG00000006244 #32	ENSODEG00000006648	ENSODEG00000006906 #32	SERPINB1 (ENSODEG00000010241) #34	WRNIP1 (ENSODEG00000006805) #35	MYLK4 (ENSODEG00000006897) #37	GMDS (ENSODEG00000009960)	ENSODEG00000007557	FOXC1 (ENSODEG00000006912)
Degu	MODERN SPECIES	62	HSCB (ENSODEG00000017352)	XBP1 (ENSODEG00000017362)	ZNRF3 (ENSODEG00000017168)	KREMEN1 (ENSODEG00000017265)	ENSODEG00000020526	EMID1 (ENSODEG00000017465)	ENSODEG00000017244	RHBDD3 (ENSODEG00000017373)	ENSODEG00000017496	GAS2L1 (ENSODEG00000017194)	RASL10A (ENSODEG00000017393)	AP1B1 (ENSODEG00000017338)	NEFH (ENSODEG00000017433)	ENSODEG00000017650	NIPSNAP1 (ENSODEG00000017189)	ENSODEG00000017494 #22	NF2 (ENSODEG00000017517)	CABP7 (ENSODEG00000017415)	ZMAT5 (ENSODEG00000017389)	ENSODEG00000017651	ASCC2 (ENSODEG00000017546)	ENSODEG00000017520	ENSODEG00000017459	KIF21A (ENSODEG00000017431)	ENSODEG00000017452	CPNE8 (ENSODEG00000017711)	ENSODEG00000020455	ENSODEG00000017594	SYT10 (ENSODEG00000017446)
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	172	LY86 (ENSCLAG00000002671)	F13A1 (ENSCLAG00000003000)	NRN1 (ENSCLAG00000011260)	FARS2 (ENSCLAG00000017316) #7	ENSCLAG00000011017	PPP1R3G (ENSCLAG00000012673) #9	RPP40 (ENSCLAG00000003235) #10	CDYL (ENSCLAG00000003356) #11	ECI2 (ENSCLAG00000003560) #13	ENSCLAG00000003863 #14	FAM217A (ENSCLAG00000004051) #15	PRPF4B (ENSCLAG00000004201) #16	PXDC1 (ENSCLAG00000002715) #18	SLC22A23 (ENSCLAG00000002845) #19	PSMG4 (ENSCLAG00000003148) #20	TUBB2B (ENSCLAG00000003177) #22	BPHL (ENSCLAG00000003241) #23	ENSCLAG00000003326 #22	RIPK1 (ENSCLAG00000002300) #24	NQO2 (ENSCLAG00000002417) #26	SERPINB6 (ENSCLAG00000002474) #33	ENSCLAG00000002657 #32	ENSCLAG00000002501 #32	ENSCLAG00000007069 #32	ENSCLAG00000007653 #32	SERPINB1 (ENSCLAG00000008637) #34	WRNIP1 (ENSCLAG00000006960) #35	MYLK4 (ENSCLAG00000007226) #37	GMDS (ENSCLAG00000002602)	FOXF2 (ENSCLAG00000002746)	EXOC2 (ENSCLAG00000003072)
Long-tailed chinchilla	MODERN SPECIES	172	NRN1 (ENSCLAG00000011260)	FARS2 (ENSCLAG00000017316) #7	ENSCLAG00000011017	PPP1R3G (ENSCLAG00000012673) #9	RPP40 (ENSCLAG00000003235) #10	CDYL (ENSCLAG00000003356) #11	ECI2 (ENSCLAG00000003560) #13	ENSCLAG00000003863 #14	FAM217A (ENSCLAG00000004051) #15	PRPF4B (ENSCLAG00000004201) #16	PXDC1 (ENSCLAG00000002715) #18	SLC22A23 (ENSCLAG00000002845) #19	PSMG4 (ENSCLAG00000003148) #20	TUBB2B (ENSCLAG00000003177) #22	BPHL (ENSCLAG00000003241) #23	ENSCLAG00000003326 #22	RIPK1 (ENSCLAG00000002300) #24	NQO2 (ENSCLAG00000002417) #26	SERPINB6 (ENSCLAG00000002474) #33	ENSCLAG00000002657 #32	ENSCLAG00000002501 #32	ENSCLAG00000007069 #32	ENSCLAG00000007653 #32	SERPINB1 (ENSCLAG00000008637) #34	WRNIP1 (ENSCLAG00000006960) #35	MYLK4 (ENSCLAG00000007226) #37	GMDS (ENSCLAG00000002602)	FOXF2 (ENSCLAG00000002746)	EXOC2 (ENSCLAG00000003072)	IRF4 (ENSCLAG00000004136)	DUSP22 (ENSCLAG00000004363)