Mammalia	ANCESTRAL SPECIES	3	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000157153	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00940000154573 #28	ENSGT00940000154835.C
Theria	ANCESTRAL SPECIES	7	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000157153	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00940000154573 #28
Eutheria	ANCESTRAL SPECIES	30	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.h ##27	ENSGT00940000154931	ENSGT00940000154519.g.b #27	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Primates	ANCESTRAL SPECIES	5	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Simiiformes	ANCESTRAL SPECIES	5	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00910000147563	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000154295.y.b.b	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00910000147563	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000154295.y.b.b	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00390000001231.s.a.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00940000154632.q.a.a.b #14	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000154295.y.b.b	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00950000183029.B.c.b.b.b.u.b #25	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Cercopithecinae_b	ANCESTRAL SPECIES	37	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00940000154632.q.a.a.b #14	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00950000183029.B.c.b.b.b.u.b #25	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Cercopithecinae_d	ANCESTRAL SPECIES	41	ENSGT00910000146968	ENSGT00950000183142.a.b.a.b.p	ENSGT00910000147352	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00940000154632.q.a.a.b #14	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00950000183029.B.c.b.b.b.u.b #25	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Sooty mangabey	MODERN SPECIES	247							ECI2 (ENSCATG00000039055) #13	ENSCATG00000034182 #14	ENSCATG00000038905 #15	FAM217A (ENSCATG00000045004) #16	PRPF4B (ENSCATG00000039868) #17	FAM50B (ENSCATG00000019736) #18	PXDC1 (ENSCATG00000034625) #19	SLC22A23 (ENSCATG00000022177) #20	PSMG4 (ENSCATG00000036332) #21	TUBB2B (ENSCATG00000017036) #22	BPHL (ENSCATG00000032656) #23	RIPK1 (ENSCATG00000032918) #24	ENSCATG00000021756 #25	NQO2 (ENSCATG00000027170) #26	SERPINB6 (ENSCATG00000030479) #27	SERPINB1 (ENSCATG00000039910) #28	WRNIP1 (ENSCATG00000041978) #29	MYLK4 (ENSCATG00000036658) #30	ENSCATG00000033597 #31	GMDS (ENSCATG00000039562) #32	ENSCATG00000043623 #33	FOXF2 (ENSCATG00000005462) #34	FOXQ1 (ENSCATG00000017933) #35	HUS1B (ENSCATG00000008071) #36	EXOC2 (ENSCATG00000037603) #37
Drill	DUPLICATION
Drill	MODERN SPECIES	899	ENSMLEG00000030282	ENSMLEG00000034332	ENSMLEG00000041575	RPP40 (ENSMLEG00000040851)	CDYL (ENSMLEG00000010888)	ECI2 (ENSMLEG00000033204) #13	ENSMLEG00000037689 #14	ENSMLEG00000031291 #15	FAM217A (ENSMLEG00000039857) #16	PRPF4B (ENSMLEG00000030421) #17	ENSMLEG00000021954	FAM50B (ENSMLEG00000005931) #18	PXDC1 (ENSMLEG00000037642) #19	SLC22A23 (ENSMLEG00000029569) #20	PSMG4 (ENSMLEG00000035294) #21	TUBB2B (ENSMLEG00000037972) #22	ENSMLEG00000034009 #22	BPHL (ENSMLEG00000033802) #23	RIPK1 (ENSMLEG00000025829) #24	ENSMLEG00000033411 #25	NQO2 (ENSMLEG00000044409) #26	SERPINB6 (ENSMLEG00000013840) #27	SERPINB9 (ENSMLEG00000028963)	SERPINB1 (ENSMLEG00000031662) #28	ENSMLEG00000011844 #29	MYLK4 (ENSMLEG00000043022) #30	ENSMLEG00000041640 #31	ENSMLEG00000044127	ENSMLEG00000027734 #33	ENSMLEG00000019226	EXOC2 (ENSMLEG00000033278) #37
Drill	MODERN SPECIES	899	ENSMLEG00000034332	ENSMLEG00000041575	RPP40 (ENSMLEG00000040851)	CDYL (ENSMLEG00000010888)	ECI2 (ENSMLEG00000033204) #13	ENSMLEG00000037689 #14	ENSMLEG00000031291 #15	FAM217A (ENSMLEG00000039857) #16	PRPF4B (ENSMLEG00000030421) #17	ENSMLEG00000021954	FAM50B (ENSMLEG00000005931) #18	PXDC1 (ENSMLEG00000037642) #19	SLC22A23 (ENSMLEG00000029569) #20	PSMG4 (ENSMLEG00000035294) #21	TUBB2B (ENSMLEG00000037972) #22	ENSMLEG00000034009 #22	BPHL (ENSMLEG00000033802) #23	RIPK1 (ENSMLEG00000025829) #24	ENSMLEG00000033411 #25	NQO2 (ENSMLEG00000044409) #26	SERPINB6 (ENSMLEG00000013840) #27	SERPINB9 (ENSMLEG00000028963)	SERPINB1 (ENSMLEG00000031662) #28	ENSMLEG00000011844 #29	MYLK4 (ENSMLEG00000043022) #30	ENSMLEG00000041640 #31	ENSMLEG00000044127	ENSMLEG00000027734 #33	ENSMLEG00000019226	EXOC2 (ENSMLEG00000033278) #37	IRF4 (ENSMLEG00000004768)
Olive baboon	MODERN SPECIES	16	FARS2 (ENSPANG00000018208)	ENSPANG00000023576	ENSPANG00000046029	RPP40 (ENSPANG00000017865)	ENSPANG00000045914	CDYL (ENSPANG00000023577)	ECI2 (ENSPANG00000025189) #13	ENSPANG00000021758 #15	FAM217A (ENSPANG00000009605) #16	PRPF4B (ENSPANG00000008444) #17	ENSPANG00000039354	FAM50B (ENSPANG00000006202) #18	ENSPANG00000037486 #19	SLC22A23 (ENSPANG00000023485) #20	PSMG4 (ENSPANG00000007366) #21	TUBB2B (ENSPANG00000047634) #22	RIPK1 (ENSPANG00000024400) #24	ENSPANG00000038780	ENSPANG00000033442 ##25	NQO2 (ENSPANG00000033064) #26	ENSPANG00000015755	SERPINB1 (ENSPANG00000030460) #28	ENSPANG00000041893	WRNIP1 (ENSPANG00000044052) #29	MYLK4 (ENSPANG00000007409) #30	GMDS (ENSPANG00000020544) #32	FOXC1 (ENSPANG00000011156)	FOXF2 (ENSPANG00000044013) #34	FOXQ1 (ENSPANG00000037731) #35	EXOC2 (ENSPANG00000010769) #37	IRF4 (ENSPANG00000023389)
Macaca	ANCESTRAL SPECIES	23	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00940000154632.q.a.a.b #14	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000154295.y.b.b	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00950000183029.B.c.b.b.b.u.b #25	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00390000001231.s.a.a.b
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	136	ENSMNEG00000045067	ENSMNEG00000003878	RPP40 (ENSMNEG00000041986)	CDYL (ENSMNEG00000038983)	ECI2 (ENSMNEG00000000039) #13	ENSMNEG00000034908 #14	ENSMNEG00000020877 #15	FAM217A (ENSMNEG00000035674) #16	PRPF4B (ENSMNEG00000036107) #17	ENSMNEG00000039272	FAM50B (ENSMNEG00000017045) #18	PXDC1 (ENSMNEG00000029513) #19	ENSMNEG00000040334	SLC22A23 (ENSMNEG00000035865) #20	PSMG4 (ENSMNEG00000045254) #21	TUBB2B (ENSMNEG00000000042) #22	ENSMNEG00000030834 #22	BPHL (ENSMNEG00000034992) #23	RIPK1 (ENSMNEG00000029731) #24	ENSMNEG00000030982 #25	NQO2 (ENSMNEG00000039080) #26	SERPINB6 (ENSMNEG00000038077) #27	SERPINB9 (ENSMNEG00000018071)	SERPINB1 (ENSMNEG00000031098) #28	WRNIP1 (ENSMNEG00000032509) #29	MYLK4 (ENSMNEG00000033807) #30	ENSMNEG00000035768 #31	ENSMNEG00000036375	GMDS (ENSMNEG00000035111) #32	FOXC1 (ENSMNEG00000006978)
Pig-tailed macaque	MODERN SPECIES	136	ENSMNEG00000003878	RPP40 (ENSMNEG00000041986)	CDYL (ENSMNEG00000038983)	ECI2 (ENSMNEG00000000039) #13	ENSMNEG00000034908 #14	ENSMNEG00000020877 #15	FAM217A (ENSMNEG00000035674) #16	PRPF4B (ENSMNEG00000036107) #17	ENSMNEG00000039272	FAM50B (ENSMNEG00000017045) #18	PXDC1 (ENSMNEG00000029513) #19	ENSMNEG00000040334	SLC22A23 (ENSMNEG00000035865) #20	PSMG4 (ENSMNEG00000045254) #21	TUBB2B (ENSMNEG00000000042) #22	ENSMNEG00000030834 #22	BPHL (ENSMNEG00000034992) #23	RIPK1 (ENSMNEG00000029731) #24	ENSMNEG00000030982 #25	NQO2 (ENSMNEG00000039080) #26	SERPINB6 (ENSMNEG00000038077) #27	SERPINB9 (ENSMNEG00000018071)	SERPINB1 (ENSMNEG00000031098) #28	WRNIP1 (ENSMNEG00000032509) #29	MYLK4 (ENSMNEG00000033807) #30	ENSMNEG00000035768 #31	ENSMNEG00000036375	GMDS (ENSMNEG00000035111) #32	FOXC1 (ENSMNEG00000006978)
Macaca_a	ANCESTRAL SPECIES	24	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00910000147352	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Crab-eating macaque	MODERN SPECIES	14	F13A1 (ENSMFAG00000001306)	NRN1 (ENSMFAG00000062211)	FARS2 (ENSMFAG00000043484)	ENSMFAG00000002120	ENSMFAG00000054956	RPP40 (ENSMFAG00000043100)	CDYL (ENSMFAG00000042478)	ENSMFAG00000061853	ECI2 (ENSMFAG00000039175) #13	ENSMFAG00000044085 #15	FAM217A (ENSMFAG00000044867) #16	PRPF4B (ENSMFAG00000018980) #17	PXDC1 (ENSMFAG00000044456) #19	SLC22A23 (ENSMFAG00000034156) #20	PSMG4 (ENSMFAG00000039884) #21	ENSMFAG00000003772 #22	BPHL (ENSMFAG00000041437) #23	RIPK1 (ENSMFAG00000037119) #24	ENSMFAG00000043217	NQO2 (ENSMFAG00000035954) #26	SERPINB6 (ENSMFAG00000043844) #27	SERPINB9 (ENSMFAG00000042251)	SERPINB1 (ENSMFAG00000001421) #28	WRNIP1 (ENSMFAG00000001313) #29	MYLK4 (ENSMFAG00000057340) #30	GMDS (ENSMFAG00000031316) #32	FOXF2 (ENSMFAG00000036369) #34	FOXQ1 (ENSMFAG00000062586) #35	EXOC2 (ENSMFAG00000045215) #37	IRF4 (ENSMFAG00000045100)	DUSP22 (ENSMFAG00000034531)
Rhesus	MODERN SPECIES	14	ENSMMUG00000057424	ENSMMUG00000049865	PPP1R3G (ENSMMUG00000061878)	RPP40 (ENSMMUG00000004966)	CDYL (ENSMMUG00000004964)	ENSMMUG00000055619	ENSMMUG00000054791	ECI2 (ENSMMUG00000014021) #13	TEX56P (ENSMMUG00000014020) #15	FAM217A (ENSMMUG00000014019) #16	PRPF4B (ENSMMUG00000014017) #17	FAM50B (ENSMMUG00000039209) #18	PXDC1 (ENSMMUG00000010926) #19	SLC22A23 (ENSMMUG00000001371) #20	PSMG4 (ENSMMUG00000011031) #21	TUBB2B (ENSMMUG00000023785) #22	BPHL (ENSMMUG00000008483) #23	RIPK1 (ENSMMUG00000008485) #24	NQO2 (ENSMMUG00000008487) #26	SERPINB6 (ENSMMUG00000037816) #27	SERPINB9 (ENSMMUG00000011719)	SERPINB1 (ENSMMUG00000042368) #28	WRNIP1 (ENSMMUG00000007143) #29	MYLK4 (ENSMMUG00000007144) #30	GMDS (ENSMMUG00000005779) #32	FOXC1 (ENSMMUG00000005778)	FOXF2 (ENSMMUG00000004540) #34	FOXQ1 (ENSMMUG00000059043) #35	EXOC2 (ENSMMUG00000023558) #37	IRF4 (ENSMMUG00000018513)	DUSP22 (ENSMMUG00000018514)
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	8	F13A1 (ENSCSAG00000007361)	NRN1 (ENSCSAG00000007350)	FARS2 (ENSCSAG00000007344)	LYRM4 (ENSCSAG00000007314)	PPP1R3G (ENSCSAG00000019110)	RPP40 (ENSCSAG00000007307)	CDYL (ENSCSAG00000007301)	ECI2 (ENSCSAG00000007294) #13	ENSCSAG00000007286 #15	FAM217A (ENSCSAG00000007279) #16	PRPF4B (ENSCSAG00000007273) #17	FAM50B (ENSCSAG00000019111) #18	PXDC1 (ENSCSAG00000007263) #19	SLC22A23 (ENSCSAG00000007261) #20	PSMG4 (ENSCSAG00000007253) #21	TUBB2B (ENSCSAG00000007249) #22	TUBB2A (ENSCSAG00000007247) #22	BPHL (ENSCSAG00000007243) #23	RIPK1 (ENSCSAG00000007224) #24	NQO2 (ENSCSAG00000007218) #26	SERPINB6 (ENSCSAG00000007210) #27	SERPINB9 (ENSCSAG00000007207)	SERPINB1 (ENSCSAG00000007203) #28	WRNIP1 (ENSCSAG00000007198) #29	MYLK4 (ENSCSAG00000007191) #30	ENSCSAG00000007184 #32	FOXC1 (ENSCSAG00000019112)	FOXF2 (ENSCSAG00000007180) #34	FOXQ1 (ENSCSAG00000019113) #35	ENSCSAG00000007177	EXOC2 (ENSCSAG00000007171) #37
Vervet Monkey	MODERN SPECIES	8	NRN1 (ENSCSAG00000007350)	FARS2 (ENSCSAG00000007344)	LYRM4 (ENSCSAG00000007314)	PPP1R3G (ENSCSAG00000019110)	RPP40 (ENSCSAG00000007307)	CDYL (ENSCSAG00000007301)	ECI2 (ENSCSAG00000007294) #13	ENSCSAG00000007286 #15	FAM217A (ENSCSAG00000007279) #16	PRPF4B (ENSCSAG00000007273) #17	FAM50B (ENSCSAG00000019111) #18	PXDC1 (ENSCSAG00000007263) #19	SLC22A23 (ENSCSAG00000007261) #20	PSMG4 (ENSCSAG00000007253) #21	TUBB2B (ENSCSAG00000007249) #22	TUBB2A (ENSCSAG00000007247) #22	BPHL (ENSCSAG00000007243) #23	RIPK1 (ENSCSAG00000007224) #24	NQO2 (ENSCSAG00000007218) #26	SERPINB6 (ENSCSAG00000007210) #27	SERPINB9 (ENSCSAG00000007207)	SERPINB1 (ENSCSAG00000007203) #28	WRNIP1 (ENSCSAG00000007198) #29	MYLK4 (ENSCSAG00000007191) #30	ENSCSAG00000007184 #32	FOXC1 (ENSCSAG00000019112)	FOXF2 (ENSCSAG00000007180) #34	FOXQ1 (ENSCSAG00000019113) #35	ENSCSAG00000007177	EXOC2 (ENSCSAG00000007171) #37	IRF4 (ENSCSAG00000007164)
Rhinopithecus	ANCESTRAL SPECIES	233			ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154632.q.a.a.b #14	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000154295.y.b.b	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00910000147563	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32
Black snub-nosed monkey	MODERN SPECIES	1511		RPP40 (ENSRBIG00000035800)	CDYL (ENSRBIG00000041073)	ENSRBIG00000041293 #13	ENSRBIG00000037967 #15	ENSRBIG00000038999 #14	FAM217A (ENSRBIG00000032885) #16	PRPF4B (ENSRBIG00000033308) #17	ENSRBIG00000043910	FAM50B (ENSRBIG00000005193) #18	ENSRBIG00000030150	PXDC1 (ENSRBIG00000034887) #19	ENSRBIG00000028534	SLC22A23 (ENSRBIG00000033453) #20	PSMG4 (ENSRBIG00000030513) #21	TUBB2B (ENSRBIG00000044962) #22	BPHL (ENSRBIG00000023282) #23	RIPK1 (ENSRBIG00000044016) #24	NQO2 (ENSRBIG00000031353) #26	ENSRBIG00000023655	SERPINB6 (ENSRBIG00000035085) #27	SERPINB9 (ENSRBIG00000044955)	SERPINB1 (ENSRBIG00000035002) #28	WRNIP1 (ENSRBIG00000030451) #29	MYLK4 (ENSRBIG00000036683) #30	GMDS (ENSRBIG00000032090) #32	ENSRBIG00000024296 #33	FOXF2 (ENSRBIG00000040570) #34	EXOC2 (ENSRBIG00000000949) #37	HUS1B (ENSRBIG00000029067) #36	XRCC4 (ENSRBIG00000035524)
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	985												PXDC1 (ENSRROG00000038805) #19	ENSRROG00000034402	SLC22A23 (ENSRROG00000043800) #20	PSMG4 (ENSRROG00000025040) #21	TUBB2B (ENSRROG00000027371) #22	BPHL (ENSRROG00000024570) #23	RIPK1 (ENSRROG00000035266) #24	NQO2 (ENSRROG00000032281) #26	ENSRROG00000025624	SERPINB6 (ENSRROG00000042629) #27	SERPINB9 (ENSRROG00000029131)	SERPINB1 (ENSRROG00000029468) #28	WRNIP1 (ENSRROG00000030448) #29	MYLK4 (ENSRROG00000038081) #30	GMDS (ENSRROG00000030799) #32
Golden snub-nosed monkey	MODERN SPECIES	36																ENSRROG00000035069 #22
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b.c.a.a	ENSGT00940000156563 #26	ENSGT00910000147563	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	23	FARS2 (ENSNLEG00000011479)	ENSNLEG00000030412	ENSNLEG00000011472	ENSNLEG00000028872	PPP1R3G (ENSNLEG00000018873)	RPP40 (ENSNLEG00000034397)	CDYL (ENSNLEG00000011446)	ENSNLEG00000031998	ECI2 (ENSNLEG00000011371) #13	ENSNLEG00000011349 #15	ENSNLEG00000011341 #16	PRPF4B (ENSNLEG00000011291) #17	ENSNLEG00000031341 #19	SLC22A23 (ENSNLEG00000011273) #20	ENSNLEG00000011266 #21	TUBB2B (ENSNLEG00000011121) #22	TUBB2A (ENSNLEG00000031860) #22	BPHL (ENSNLEG00000028923) #23	RIPK1 (ENSNLEG00000011075) #24	ENSNLEG00000011073	NQO2 (ENSNLEG00000011051) #26	ENSNLEG00000029196	SERPINB6 (ENSNLEG00000011022) #27	SERPINB9 (ENSNLEG00000031330)	SERPINB1 (ENSNLEG00000010958) #28	WRNIP1 (ENSNLEG00000010928) #29	MYLK4 (ENSNLEG00000010906) #30	ENSNLEG00000035231 #31	GMDS (ENSNLEG00000010832) #32	ENSNLEG00000010830	ENSNLEG00000029356
Gibbon	MODERN SPECIES	23	ENSNLEG00000030412	ENSNLEG00000011472	ENSNLEG00000028872	PPP1R3G (ENSNLEG00000018873)	RPP40 (ENSNLEG00000034397)	CDYL (ENSNLEG00000011446)	ENSNLEG00000031998	ECI2 (ENSNLEG00000011371) #13	ENSNLEG00000011349 #15	ENSNLEG00000011341 #16	PRPF4B (ENSNLEG00000011291) #17	ENSNLEG00000031341 #19	SLC22A23 (ENSNLEG00000011273) #20	ENSNLEG00000011266 #21	TUBB2B (ENSNLEG00000011121) #22	TUBB2A (ENSNLEG00000031860) #22	BPHL (ENSNLEG00000028923) #23	RIPK1 (ENSNLEG00000011075) #24	ENSNLEG00000011073	NQO2 (ENSNLEG00000011051) #26	ENSNLEG00000029196	SERPINB6 (ENSNLEG00000011022) #27	SERPINB9 (ENSNLEG00000031330)	SERPINB1 (ENSNLEG00000010958) #28	WRNIP1 (ENSNLEG00000010928) #29	MYLK4 (ENSNLEG00000010906) #30	ENSNLEG00000035231 #31	GMDS (ENSNLEG00000010832) #32	ENSNLEG00000010830	ENSNLEG00000029356	ENSNLEG00000010829 #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00550000076325	ENSGT00530000063480.b.h	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b.c.a.a	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Orangutan	MODERN SPECIES	19	ENSPPYG00000039334	ENSPPYG00000030077	PPP1R3G (ENSPPYG00000040553)	RPP40 (ENSPPYG00000016194)	ENSPPYG00000016193	CDYL (ENSPPYG00000016192)	ENSPPYG00000033633	ECI2 (ENSPPYG00000016190) #13	ENSPPYG00000016189 #15	ENSPPYG00000016188 #16	PRPF4B (ENSPPYG00000016187) #17	FAM50B (ENSPPYG00000016184) #18	PXDC1 (ENSPPYG00000041429) #19	SLC22A23 (ENSPPYG00000016182) #20	ENSPPYG00000016181 #21	TUBB2B (ENSPPYG00000016180) #22	BPHL (ENSPPYG00000016179) #23	RIPK1 (ENSPPYG00000016178) #24	NQO2 (ENSPPYG00000016176) #26	SERPINB6 (ENSPPYG00000016174) #27	SERPINB9 (ENSPPYG00000016173)	SERPINB1 (ENSPPYG00000016172) #28	WRNIP1 (ENSPPYG00000041417) #29	MYLK4 (ENSPPYG00000016170) #30	GMDS (ENSPPYG00000016168) #32	FOXC1 (ENSPPYG00000016167)	FOXF2 (ENSPPYG00000016166) #34	FOXQ1 (ENSPPYG00000016165) #35	EXOC2 (ENSPPYG00000016162) #37	IRF4 (ENSPPYG00000016161)	DUSP22 (ENSPPYG00000016160)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00550000076325	ENSGT00530000063480.b.h	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b.c.a.a	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	19	ENSGGOG00000039934	PPP1R3G (ENSGGOG00000025700)	RPP40 (ENSGGOG00000013764)	ENSGGOG00000025602	CDYL (ENSGGOG00000022529)	ENSGGOG00000024917	ENSGGOG00000042566	ECI2 (ENSGGOG00000006430) #13	ENSGGOG00000023940 #15	ENSGGOG00000034975 #16	PRPF4B (ENSGGOG00000006422) #17	ENSGGOG00000044208	PXDC1 (ENSGGOG00000000462) #19	SLC22A23 (ENSGGOG00000012609) #20	ENSGGOG00000012606 #21	TUBB2B (ENSGGOG00000002310) #22	ENSGGOG00000041508 #22	BPHL (ENSGGOG00000012596) #23	RIPK1 (ENSGGOG00000012589) #24	NQO2 (ENSGGOG00000011077) #26	SERPINB6 (ENSGGOG00000016546) #27	SERPINB9 (ENSGGOG00000038562)	SERPINB1 (ENSGGOG00000007770) #28	WRNIP1 (ENSGGOG00000022046) #29	MYLK4 (ENSGGOG00000004856) #30	GMDS (ENSGGOG00000005663) #32	ENSGGOG00000009269	ENSGGOG00000022142 #33	FOXF2 (ENSGGOG00000013479) #34	ENSGGOG00000038740 #35	HUS1B (ENSGGOG00000007415) #36
Gorilla	MODERN SPECIES	19	PPP1R3G (ENSGGOG00000025700)	RPP40 (ENSGGOG00000013764)	ENSGGOG00000025602	CDYL (ENSGGOG00000022529)	ENSGGOG00000024917	ENSGGOG00000042566	ECI2 (ENSGGOG00000006430) #13	ENSGGOG00000023940 #15	ENSGGOG00000034975 #16	PRPF4B (ENSGGOG00000006422) #17	ENSGGOG00000044208	PXDC1 (ENSGGOG00000000462) #19	SLC22A23 (ENSGGOG00000012609) #20	ENSGGOG00000012606 #21	TUBB2B (ENSGGOG00000002310) #22	ENSGGOG00000041508 #22	BPHL (ENSGGOG00000012596) #23	RIPK1 (ENSGGOG00000012589) #24	NQO2 (ENSGGOG00000011077) #26	SERPINB6 (ENSGGOG00000016546) #27	SERPINB9 (ENSGGOG00000038562)	SERPINB1 (ENSGGOG00000007770) #28	WRNIP1 (ENSGGOG00000022046) #29	MYLK4 (ENSGGOG00000004856) #30	GMDS (ENSGGOG00000005663) #32	ENSGGOG00000009269	ENSGGOG00000022142 #33	FOXF2 (ENSGGOG00000013479) #34	ENSGGOG00000038740 #35	HUS1B (ENSGGOG00000007415) #36	EXOC2 (ENSGGOG00000005415) #37
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000157289.a	ENSGT00940000161627.a.a.a.b.b.b.b.b.b	ENSGT00910000146968	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.t	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b.c.a.a	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Pan	ANCESTRAL SPECIES	29	ENSGT00940000169445	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.t	ENSGT00550000076325	ENSGT01020000230346.C.c.b.a.b	ENSGT00910000147523	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00550000075030.n	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b.c.a.a	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Bonobo	MODERN SPECIES	19	PPP1R3G (ENSPPAG00000010105)	RPP40 (ENSPPAG00000023703)	ENSPPAG00000042882	CDYL (ENSPPAG00000036996)	ENSPPAG00000037535	ENSPPAG00000034861	ECI2 (ENSPPAG00000040308) #13	ENSPPAG00000030290 #15	ENSPPAG00000035868 #16	PRPF4B (ENSPPAG00000040144) #17	ENSPPAG00000036576	PXDC1 (ENSPPAG00000032898) #19	SLC22A23 (ENSPPAG00000033292) #20	ENSPPAG00000035910 #21	ENSPPAG00000035950	TUBB2A (ENSPPAG00000034122) #22	BPHL (ENSPPAG00000035074) #23	RIPK1 (ENSPPAG00000027763) #24	NQO2 (ENSPPAG00000016998) #26	SERPINB6 (ENSPPAG00000043993) #27	SERPINB9 (ENSPPAG00000034571)	SERPINB1 (ENSPPAG00000041181) #28	WRNIP1 (ENSPPAG00000034495) #29	MYLK4 (ENSPPAG00000035250) #30	ENSPPAG00000022392 #31	GMDS (ENSPPAG00000026874) #32	ENSPPAG00000039651 #33	ENSPPAG00000039358 #34	HUS1B (ENSPPAG00000023178) #36	EXOC2 (ENSPPAG00000029339) #37	IRF4 (ENSPPAG00000040992)
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	19	PPP1R3G (ENSPTRG00000042254)	RPP40 (ENSPTRG00000017690)	ENSPTRG00000046429	CDYL (ENSPTRG00000017688)	ENSPTRG00000047562	ENSPTRG00000046313	ECI2 (ENSPTRG00000017687) #13	TEX56P (ENSPTRG00000017686) #15	ENSPTRG00000051400 #16	PRPF4B (ENSPTRG00000017683) #17	ENSPTRG00000051344	PXDC1 (ENSPTRG00000017679) #19	SLC22A23 (ENSPTRG00000017678) #20	PSMG4 (ENSPTRG00000033938) #21	ENSPTRG00000050739 #22	ENSPTRG00000048005 #22	ENSPTRG00000044345 #22	BPHL (ENSPTRG00000017673) #23	RIPK1 (ENSPTRG00000017672) #24	ENSPTRG00000048006	NQO2 (ENSPTRG00000017670) #26	SERPINB6 (ENSPTRG00000017669) #27	SERPINB9 (ENSPTRG00000017668)	SERPINB1 (ENSPTRG00000017667) #28	WRNIP1 (ENSPTRG00000017666) #29	MYLK4 (ENSPTRG00000017665) #30	ENSPTRG00000047752 #31	GMDS (ENSPTRG00000017663) #32	FOXC1 (ENSPTRG00000051406)	ENSPTRG00000046603 #33	FOXF2 (ENSPTRG00000017662) #34
Chimpanzee	MODERN SPECIES	19	ENSPTRG00000045800	PPP1R3G (ENSPTRG00000042254)	RPP40 (ENSPTRG00000017690)	ENSPTRG00000046429	CDYL (ENSPTRG00000017688)	ENSPTRG00000047562	ENSPTRG00000046313	ECI2 (ENSPTRG00000017687) #13	TEX56P (ENSPTRG00000017686) #15	ENSPTRG00000051400 #16	PRPF4B (ENSPTRG00000017683) #17	ENSPTRG00000051344	PXDC1 (ENSPTRG00000017679) #19	SLC22A23 (ENSPTRG00000017678) #20	PSMG4 (ENSPTRG00000033938) #21	ENSPTRG00000050739 #22	ENSPTRG00000048005 #22	ENSPTRG00000044345 #22	BPHL (ENSPTRG00000017673) #23	RIPK1 (ENSPTRG00000017672) #24	ENSPTRG00000048006	NQO2 (ENSPTRG00000017670) #26	SERPINB6 (ENSPTRG00000017669) #27	SERPINB9 (ENSPTRG00000017668)	SERPINB1 (ENSPTRG00000017667) #28	WRNIP1 (ENSPTRG00000017666) #29	MYLK4 (ENSPTRG00000017665) #30	ENSPTRG00000047752 #31	GMDS (ENSPTRG00000017663) #32	FOXC1 (ENSPTRG00000051406)	ENSPTRG00000046603 #33
Chimpanzee	MODERN SPECIES	19	RPP40 (ENSPTRG00000017690)	ENSPTRG00000046429	CDYL (ENSPTRG00000017688)	ENSPTRG00000047562	ENSPTRG00000046313	ECI2 (ENSPTRG00000017687) #13	TEX56P (ENSPTRG00000017686) #15	ENSPTRG00000051400 #16	PRPF4B (ENSPTRG00000017683) #17	ENSPTRG00000051344	PXDC1 (ENSPTRG00000017679) #19	SLC22A23 (ENSPTRG00000017678) #20	PSMG4 (ENSPTRG00000033938) #21	ENSPTRG00000050739 #22	ENSPTRG00000048005 #22	ENSPTRG00000044345 #22	BPHL (ENSPTRG00000017673) #23	RIPK1 (ENSPTRG00000017672) #24	ENSPTRG00000048006	NQO2 (ENSPTRG00000017670) #26	SERPINB6 (ENSPTRG00000017669) #27	SERPINB9 (ENSPTRG00000017668)	SERPINB1 (ENSPTRG00000017667) #28	WRNIP1 (ENSPTRG00000017666) #29	MYLK4 (ENSPTRG00000017665) #30	ENSPTRG00000047752 #31	GMDS (ENSPTRG00000017663) #32	FOXC1 (ENSPTRG00000051406)	ENSPTRG00000046603 #33	FOXF2 (ENSPTRG00000017662) #34	FOXQ1 (ENSPTRG00000029883) #35
Human	DUPLICATION
Human	MODERN SPECIES	18	LY86 (ENSG00000112799)	F13A1 (ENSG00000124491)	NRN1 (ENSG00000124785)	FARS2 (ENSG00000145982)	LYRM4 (ENSG00000214113)	PPP1R3G (ENSG00000219607)	RPP40 (ENSG00000124787)	CDYL (ENSG00000153046)	ECI2 (ENSG00000198721) #13	FAM217A (ENSG00000145975) #16	PRPF4B (ENSG00000112739) #17	FAM50B (ENSG00000145945) #18	PXDC1 (ENSG00000168994) #19	SLC22A23 (ENSG00000137266) #20	PSMG4 (ENSG00000180822) #21	TUBB2B (ENSG00000137285) #22	TUBB2A (ENSG00000137267) #22	BPHL (ENSG00000137274) #23	RIPK1 (ENSG00000137275) #24	NQO2 (ENSG00000124588) #26	SERPINB6 (ENSG00000124570) #27	SERPINB9 (ENSG00000170542)	SERPINB1 (ENSG00000021355) #28	WRNIP1 (ENSG00000124535) #29	MYLK4 (ENSG00000145949) #30	GMDS (ENSG00000112699) #32	FOXC1 (ENSG00000054598)	FOXF2 (ENSG00000137273) #34	FOXQ1 (ENSG00000164379) #35	HUS1B (ENSG00000188996) #36	EXOC2 (ENSG00000112685) #37
Human	MODERN SPECIES	18	F13A1 (ENSG00000124491)	NRN1 (ENSG00000124785)	FARS2 (ENSG00000145982)	LYRM4 (ENSG00000214113)	PPP1R3G (ENSG00000219607)	RPP40 (ENSG00000124787)	CDYL (ENSG00000153046)	ECI2 (ENSG00000198721) #13	FAM217A (ENSG00000145975) #16	PRPF4B (ENSG00000112739) #17	FAM50B (ENSG00000145945) #18	PXDC1 (ENSG00000168994) #19	SLC22A23 (ENSG00000137266) #20	PSMG4 (ENSG00000180822) #21	TUBB2B (ENSG00000137285) #22	TUBB2A (ENSG00000137267) #22	BPHL (ENSG00000137274) #23	RIPK1 (ENSG00000137275) #24	NQO2 (ENSG00000124588) #26	SERPINB6 (ENSG00000124570) #27	SERPINB9 (ENSG00000170542)	SERPINB1 (ENSG00000021355) #28	WRNIP1 (ENSG00000124535) #29	MYLK4 (ENSG00000145949) #30	GMDS (ENSG00000112699) #32	FOXC1 (ENSG00000054598)	FOXF2 (ENSG00000137273) #34	FOXQ1 (ENSG00000164379) #35	HUS1B (ENSG00000188996) #36	EXOC2 (ENSG00000112685) #37	IRF4 (ENSG00000137265)
Platyrrhini	ANCESTRAL SPECIES	34	ENSGT00940000158071	ENSGT00940000157289.a.a.b	ENSGT00940000157289.a.a.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209.f #19	ENSGT00390000009209.e.a #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746.c.a #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00390000001231.s.a
Cebidae	ANCESTRAL SPECIES	33	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a.a.b	ENSGT00940000157289.a.a.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209.e.a #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746.c.a #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000154953 #33	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00390000001231.s.a
Marmoset	MODERN SPECIES	16	NRN1 (ENSCJAG00000084548)	FARS2 (ENSCJAG00000021369)	ENSCJAG00000021370	ENSCJAG00000069228	PPP1R3G (ENSCJAG00000021371)	RPP40 (ENSCJAG00000021373)	CDYL (ENSCJAG00000021374)	ECI2 (ENSCJAG00000021377) #13	ENSCJAG00000040689 #15	FAM217A (ENSCJAG00000021382) #16	PRPF4B (ENSCJAG00000021385) #17	FAM50B (ENSCJAG00000017601) #18	PXDC1 (ENSCJAG00000017603) #19	SLC22A23 (ENSCJAG00000017606) #20	ENSCJAG00000017623 #21	TUBB2B (ENSCJAG00000045954) #22	ENSCJAG00000017700 #23	RIPK1 (ENSCJAG00000017707) #24	NQO2 (ENSCJAG00000017717) #26	ENSCJAG00000070954	ENSCJAG00000086827	ENSCJAG00000073772	ENSCJAG00000052093	ENSCJAG00000085203	ENSCJAG00000070049	ENSCJAG00000066289	ENSCJAG00000072237	ENSCJAG00000032252	ENSCJAG00000074016	ENSCJAG00000010562 #27	SERPINB9 (ENSCJAG00000042376)
Cebidae_a	ANCESTRAL SPECIES	42	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a.a.b	ENSGT00910000146968	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209.e.a #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746.c.a #23	ENSGT00940000159347 #24	ENSGT00390000006707.w.b	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000154953 #33	ENSGT00940000162527 #34	ENSGT00390000010872 #37	ENSGT00390000001231.s.a.d	ENSGT00940000159059
Bolivian squirrel monkey	MODERN SPECIES	64	NRN1 (ENSSBOG00000016661)	FARS2 (ENSSBOG00000025432)	ENSSBOG00000033795	ENSSBOG00000029411	RPP40 (ENSSBOG00000020297)	CDYL (ENSSBOG00000034197)	ECI2 (ENSSBOG00000021463) #13	ENSSBOG00000022307 #15	FAM217A (ENSSBOG00000029826) #16	PRPF4B (ENSSBOG00000014617) #17	ENSSBOG00000013265	FAM50B (ENSSBOG00000036113) #18	PXDC1 (ENSSBOG00000000499) #19	SLC22A23 (ENSSBOG00000026574) #20	ENSSBOG00000033676	TUBB2A (ENSSBOG00000023452) #22	ENSSBOG00000032695 #23	RIPK1 (ENSSBOG00000029217) #24	NQO2 (ENSSBOG00000028797) #26	SERPINB6 (ENSSBOG00000019279) #27	SERPINB9 (ENSSBOG00000028507)	SERPINB1 (ENSSBOG00000024614) #28	WRNIP1 (ENSSBOG00000025057) #29	MYLK4 (ENSSBOG00000026264) #30	GMDS (ENSSBOG00000023900) #32	FOXF2 (ENSSBOG00000030093) #34	EXOC2 (ENSSBOG00000023371) #37	IRF4 (ENSSBOG00000034798)	ENSSBOG00000024591	DUSP22 (ENSSBOG00000033220)	ENSSBOG00000022277
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	231	ENSCCAG00000017866	ENSCCAG00000018328	GTF3C6 (ENSCCAG00000029714)	RPF2 (ENSCCAG00000030864)	ENSCCAG00000037609	SLC16A10 (ENSCCAG00000020583)	ENSCCAG00000005460	MFSD4B (ENSCCAG00000027584)	ENSCCAG00000024842	ENSCCAG00000027786 #15	FAM217A (ENSCCAG00000014228) #16	PRPF4B (ENSCCAG00000001770) #17	PXDC1 (ENSCCAG00000029262) #19	SLC22A23 (ENSCCAG00000019171) #20	PSMG4 (ENSCCAG00000025375) #21	TUBB2B (ENSCCAG00000003095) #22	ENSCCAG00000032435 #22	ENSCCAG00000024163 #23	RIPK1 (ENSCCAG00000030822) #24	ENSCCAG00000036205	NQO2 (ENSCCAG00000032987) #26	SERPINB6 (ENSCCAG00000034114) #27	SERPINB9 (ENSCCAG00000037402)	SERPINB1 (ENSCCAG00000037553) #28	WRNIP1 (ENSCCAG00000030869) #29	MYLK4 (ENSCCAG00000023264) #30	GMDS (ENSCCAG00000021064) #32	ENSCCAG00000034696 #33	FOXF2 (ENSCCAG00000033175) #34
Capuchin	MODERN SPECIES	231	ENSCCAG00000018328	GTF3C6 (ENSCCAG00000029714)	RPF2 (ENSCCAG00000030864)	ENSCCAG00000037609	SLC16A10 (ENSCCAG00000020583)	ENSCCAG00000005460	MFSD4B (ENSCCAG00000027584)	ENSCCAG00000024842	ENSCCAG00000027786 #15	FAM217A (ENSCCAG00000014228) #16	PRPF4B (ENSCCAG00000001770) #17	PXDC1 (ENSCCAG00000029262) #19	SLC22A23 (ENSCCAG00000019171) #20	PSMG4 (ENSCCAG00000025375) #21	TUBB2B (ENSCCAG00000003095) #22	ENSCCAG00000032435 #22	ENSCCAG00000024163 #23	RIPK1 (ENSCCAG00000030822) #24	ENSCCAG00000036205	NQO2 (ENSCCAG00000032987) #26	SERPINB6 (ENSCCAG00000034114) #27	SERPINB9 (ENSCCAG00000037402)	SERPINB1 (ENSCCAG00000037553) #28	WRNIP1 (ENSCCAG00000030869) #29	MYLK4 (ENSCCAG00000023264) #30	GMDS (ENSCCAG00000021064) #32	ENSCCAG00000034696 #33	FOXF2 (ENSCCAG00000033175) #34
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	638	F13A1 (ENSANAG00000035239)	NRN1 (ENSANAG00000026127)	FARS2 (ENSANAG00000019047)	ENSANAG00000033127	LYRM4 (ENSANAG00000024664)	RPP40 (ENSANAG00000029246)	CDYL (ENSANAG00000023827)	ECI2 (ENSANAG00000028772) #13	ENSANAG00000030717 #15	FAM217A (ENSANAG00000004744) #16	PRPF4B (ENSANAG00000021606) #17	FAM50B (ENSANAG00000031334) #18	ENSANAG00000021015 #19	SLC22A23 (ENSANAG00000023717) #20	PSMG4 (ENSANAG00000032191) #21	TUBB2B (ENSANAG00000036086) #22	TUBB2A (ENSANAG00000030561) #22	ENSANAG00000020303 #23	RIPK1 (ENSANAG00000033311) #24	ENSANAG00000007502	NQO2 (ENSANAG00000033860) #26
Mas night monkey	MODERN SPECIES	638	NRN1 (ENSANAG00000026127)	FARS2 (ENSANAG00000019047)	ENSANAG00000033127	LYRM4 (ENSANAG00000024664)	RPP40 (ENSANAG00000029246)	CDYL (ENSANAG00000023827)	ECI2 (ENSANAG00000028772) #13	ENSANAG00000030717 #15	FAM217A (ENSANAG00000004744) #16	PRPF4B (ENSANAG00000021606) #17	FAM50B (ENSANAG00000031334) #18	ENSANAG00000021015 #19	SLC22A23 (ENSANAG00000023717) #20	PSMG4 (ENSANAG00000032191) #21	TUBB2B (ENSANAG00000036086) #22	TUBB2A (ENSANAG00000030561) #22	ENSANAG00000020303 #23	RIPK1 (ENSANAG00000033311) #24	ENSANAG00000007502	NQO2 (ENSANAG00000033860) #26
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6444													PXDC1 (ENSTSYG00000027082) #19	SLC22A23 (ENSTSYG00000000070) #20	PSMG4 (ENSTSYG00000035888) #21	TUBB2B (ENSTSYG00000037166) #22	TUBB2A (ENSTSYG00000012371) #22	BPHL (ENSTSYG00000011270) #23	RIPK1 (ENSTSYG00000011192) #24	NQO2 (ENSTSYG00000003832) #26	SERPINB6 (ENSTSYG00000035626) #27	SERPINB9 (ENSTSYG00000003659)
Tarsier	MODERN SPECIES	6444												PXDC1 (ENSTSYG00000027082) #19	SLC22A23 (ENSTSYG00000000070) #20	PSMG4 (ENSTSYG00000035888) #21	TUBB2B (ENSTSYG00000037166) #22	TUBB2A (ENSTSYG00000012371) #22	BPHL (ENSTSYG00000011270) #23	RIPK1 (ENSTSYG00000011192) #24	NQO2 (ENSTSYG00000003832) #26	SERPINB6 (ENSTSYG00000035626) #27	SERPINB9 (ENSTSYG00000003659)
Strepsirrhini	ANCESTRAL SPECIES	29	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT01000000214902	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	141	NRN1 (ENSOGAG00000027827)	FARS2 (ENSOGAG00000001040)	ENSOGAG00000015193	PPP1R3G (ENSOGAG00000034237)	RPP40 (ENSOGAG00000006055)	ENSOGAG00000015920	ECI2 (ENSOGAG00000011635) #13	ENSOGAG00000011631 #15	FAM217A (ENSOGAG00000011629) #16	PRPF4B (ENSOGAG00000033081) #17	FAM50B (ENSOGAG00000016493) #18	PXDC1 (ENSOGAG00000016490) #19	SLC22A23 (ENSOGAG00000003183) #20	ENSOGAG00000027336 #21	TUBB2B (ENSOGAG00000032955) #22	ENSOGAG00000007496 #22	BPHL (ENSOGAG00000007494) #23	RIPK1 (ENSOGAG00000007491) #24	NQO2 (ENSOGAG00000029985) #26	SERPINB6 (ENSOGAG00000028420) #27	SERPINB9 (ENSOGAG00000029897)	ENSOGAG00000002491 #28
Bushbaby	MODERN SPECIES	141	F13A1 (ENSOGAG00000001042)	NRN1 (ENSOGAG00000027827)	FARS2 (ENSOGAG00000001040)	ENSOGAG00000015193	PPP1R3G (ENSOGAG00000034237)	RPP40 (ENSOGAG00000006055)	ENSOGAG00000015920	ECI2 (ENSOGAG00000011635) #13	ENSOGAG00000011631 #15	FAM217A (ENSOGAG00000011629) #16	PRPF4B (ENSOGAG00000033081) #17	FAM50B (ENSOGAG00000016493) #18	PXDC1 (ENSOGAG00000016490) #19	SLC22A23 (ENSOGAG00000003183) #20	ENSOGAG00000027336 #21	TUBB2B (ENSOGAG00000032955) #22	ENSOGAG00000007496 #22	BPHL (ENSOGAG00000007494) #23	RIPK1 (ENSOGAG00000007491) #24	NQO2 (ENSOGAG00000029985) #26	SERPINB6 (ENSOGAG00000028420) #27	SERPINB9 (ENSOGAG00000029897)	ENSOGAG00000002491 #28
Lemuriformes	ANCESTRAL SPECIES	63	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Lemuriformes_a	ANCESTRAL SPECIES	166							ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155105 #13	ENSGT00940000168960	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Greater bamboo lemur	MODERN SPECIES	610							ENSPSMG00000020920	ECI2 (ENSPSMG00000020985) #13	ENSPSMG00000020994 #15	FAM217A (ENSPSMG00000021011) #16	PRPF4B (ENSPSMG00000021046) #17	FAM50B (ENSPSMG00000021061) #18	PXDC1 (ENSPSMG00000021073) #19	SLC22A23 (ENSPSMG00000021123) #20	PSMG4 (ENSPSMG00000021142) #21	ENSPSMG00000021152 #22
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	497													SLC22A23 (ENSPCOG00000007966) #20	PSMG4 (ENSPCOG00000014849) #21	ENSPCOG00000020515 #22	TUBB2B (ENSPCOG00000015941) #22	BPHL (ENSPCOG00000020939) #23	RIPK1 (ENSPCOG00000024336) #24	NQO2 (ENSPCOG00000017951) #26	SERPINB6 (ENSPCOG00000019023) #27	SERPINB9 (ENSPCOG00000025594)	SERPINB1 (ENSPCOG00000003266) #28	WRNIP1 (ENSPCOG00000017172) #29	ENSPCOG00000020178	MYLK4 (ENSPCOG00000026431) #30	ENSPCOG00000019865	GMDS (ENSPCOG00000028639) #32	FOXC1 (ENSPCOG00000026920)	FOXF2 (ENSPCOG00000022131) #34
Coquerels sifaka	MODERN SPECIES	497														SLC22A23 (ENSPCOG00000007966) #20	PSMG4 (ENSPCOG00000014849) #21	ENSPCOG00000020515 #22	TUBB2B (ENSPCOG00000015941) #22	BPHL (ENSPCOG00000020939) #23	RIPK1 (ENSPCOG00000024336) #24	NQO2 (ENSPCOG00000017951) #26	SERPINB6 (ENSPCOG00000019023) #27	SERPINB9 (ENSPCOG00000025594)	SERPINB1 (ENSPCOG00000003266) #28	WRNIP1 (ENSPCOG00000017172) #29	ENSPCOG00000020178	MYLK4 (ENSPCOG00000026431) #30	ENSPCOG00000019865	GMDS (ENSPCOG00000028639) #32	FOXC1 (ENSPCOG00000026920)	FOXF2 (ENSPCOG00000022131) #34
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	5	RREB1 (ENSMICG00000003683)	LY86 (ENSMICG00000016183)	F13A1 (ENSMICG00000011731)	NRN1 (ENSMICG00000003842)	FARS2 (ENSMICG00000003828)	LYRM4 (ENSMICG00000028549)	RPP40 (ENSMICG00000003297)	ENSMICG00000011268	ECI2 (ENSMICG00000007925) #13	ENSMICG00000007923 #15	FAM217A (ENSMICG00000011781) #16	PRPF4B (ENSMICG00000011768) #17	PXDC1 (ENSMICG00000027387) #19	SLC22A23 (ENSMICG00000010664) #20	ENSMICG00000027920 #21	ENSMICG00000000129 #22	TUBB2B (ENSMICG00000010649) #22	ENSMICG00000026983 #22	BPHL (ENSMICG00000010641) #23	RIPK1 (ENSMICG00000010628) #24	NQO2 (ENSMICG00000010625) #26	ENSMICG00000038515	ENSMICG00000041621	SERPINB6 (ENSMICG00000001981) #27	ENSMICG00000033572	SERPINB9 (ENSMICG00000032410)	SERPINB1 (ENSMICG00000016870) #28	WRNIP1 (ENSMICG00000031945) #29	MYLK4 (ENSMICG00000031773) #30	GMDS (ENSMICG00000047521) #32	ENSMICG00000030022
Mouse lemur	MODERN SPECIES	5	LY86 (ENSMICG00000016183)	F13A1 (ENSMICG00000011731)	NRN1 (ENSMICG00000003842)	FARS2 (ENSMICG00000003828)	LYRM4 (ENSMICG00000028549)	RPP40 (ENSMICG00000003297)	ENSMICG00000011268	ECI2 (ENSMICG00000007925) #13	ENSMICG00000007923 #15	FAM217A (ENSMICG00000011781) #16	PRPF4B (ENSMICG00000011768) #17	PXDC1 (ENSMICG00000027387) #19	SLC22A23 (ENSMICG00000010664) #20	ENSMICG00000027920 #21	ENSMICG00000000129 #22	TUBB2B (ENSMICG00000010649) #22	ENSMICG00000026983 #22	BPHL (ENSMICG00000010641) #23	RIPK1 (ENSMICG00000010628) #24	NQO2 (ENSMICG00000010625) #26	ENSMICG00000038515	ENSMICG00000041621	SERPINB6 (ENSMICG00000001981) #27	ENSMICG00000033572	SERPINB9 (ENSMICG00000032410)	SERPINB1 (ENSMICG00000016870) #28	WRNIP1 (ENSMICG00000031945) #29	MYLK4 (ENSMICG00000031773) #30	GMDS (ENSMICG00000047521) #32	ENSMICG00000030022	FOXF2 (ENSMICG00000029665) #34
Mouse lemur	MODERN SPECIES	5	F13A1 (ENSMICG00000011731)	NRN1 (ENSMICG00000003842)	FARS2 (ENSMICG00000003828)	LYRM4 (ENSMICG00000028549)	RPP40 (ENSMICG00000003297)	ENSMICG00000011268	ECI2 (ENSMICG00000007925) #13	ENSMICG00000007923 #15	FAM217A (ENSMICG00000011781) #16	PRPF4B (ENSMICG00000011768) #17	PXDC1 (ENSMICG00000027387) #19	SLC22A23 (ENSMICG00000010664) #20	ENSMICG00000027920 #21	ENSMICG00000000129 #22	TUBB2B (ENSMICG00000010649) #22	ENSMICG00000026983 #22	BPHL (ENSMICG00000010641) #23	RIPK1 (ENSMICG00000010628) #24	NQO2 (ENSMICG00000010625) #26	ENSMICG00000038515	ENSMICG00000041621	SERPINB6 (ENSMICG00000001981) #27	ENSMICG00000033572	SERPINB9 (ENSMICG00000032410)	SERPINB1 (ENSMICG00000016870) #28	WRNIP1 (ENSMICG00000031945) #29	MYLK4 (ENSMICG00000031773) #30	GMDS (ENSMICG00000047521) #32	ENSMICG00000030022	FOXF2 (ENSMICG00000029665) #34	ENSMICG00000043294 #36
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Glires	ANCESTRAL SPECIES	5	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Rodentia	ANCESTRAL SPECIES	6	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Rodentia_A	ANCESTRAL SPECIES	26	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.c.a.b	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Sciuridae	ANCESTRAL SPECIES	1	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.c.a.b	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.ab	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005004818	MPLKIP (ENSSVLG00005004837)	SUGCT (ENSSVLG00005004898)	ENSSVLG00005005063	ENSSVLG00005005081	INHBA (ENSSVLG00005005151)	GLI3 (ENSSVLG00005005178)	C7orf25 (ENSSVLG00005005209)	PSMA2 (ENSSVLG00005005237)	MRPL32 (ENSSVLG00005005303)	ENSSVLG00005005320	HECW1 (ENSSVLG00005005468)	STK17A (ENSSVLG00005005990)	COA1 (ENSSVLG00005006028)	BLVRA (ENSSVLG00005006049)	ENSSVLG00005006086 #22	MRPS24 (ENSSVLG00005006180)	URGCP (ENSSVLG00005006226)	ENSSVLG00005006336	UBE2D4 (ENSSVLG00005006358)	DBNL (ENSSVLG00005006493)	PGAM2 (ENSSVLG00005006699)	POLM (ENSSVLG00005006728)	AEBP1 (ENSSVLG00005006770)	POLD2 (ENSSVLG00005006846)	MYL7 (ENSSVLG00005006900)	GCK (ENSSVLG00005006971)	ENSSVLG00005007143	CAMK2B (ENSSVLG00005007607)	NUDCD3 (ENSSVLG00005008781)	NPC1L1 (ENSSVLG00005008888)
Eurasian red squirrel	MODERN SPECIES	2	BDNF (ENSSVLG00005007577)	KIF18A (ENSSVLG00005007495)	ENSSVLG00005007473	METTL15 (ENSSVLG00005007460)	KCNA4 (ENSSVLG00005007441)	FSHB (ENSSVLG00005007418)	ARL14EP (ENSSVLG00005007404)	MPPED2 (ENSSVLG00005007385)	ENSSVLG00005007367	DCDC1 (ENSSVLG00005007148)	DNAJC24 (ENSSVLG00005007079)	IMMP1L (ENSSVLG00005007051)	ELP4 (ENSSVLG00005007005)	PAX6 (ENSSVLG00005006723)	ENSSVLG00005006643	ENSSVLG00005006612 #22	RCN1 (ENSSVLG00005006575)	ENSSVLG00005006549	WT1 (ENSSVLG00005006232)	EIF3M (ENSSVLG00005006089)	CCDC73 (ENSSVLG00005005944)	PRRG4 (ENSSVLG00005005895)	QSER1 (ENSSVLG00005005823)	DEPDC7 (ENSSVLG00005005722)	TCP11L1 (ENSSVLG00005005675)	CSTF3 (ENSSVLG00005005518)	ENSSVLG00005005475	HIPK3 (ENSSVLG00005005422)	KIAA1549L (ENSSVLG00005005254)	C11orf91 (ENSSVLG00005005211)	ENSSVLG00005005193
Eurasian red squirrel	MODERN SPECIES	16	NRN1 (ENSSVLG00005008393)	FARS2 (ENSSVLG00005008373)	ENSSVLG00005008346	LYRM4 (ENSSVLG00005008312)	PPP1R3G (ENSSVLG00005008297)	RPP40 (ENSSVLG00005008216)	CDYL (ENSSVLG00005008158)	ECI2 (ENSSVLG00005008033) #13	ENSSVLG00005007999 #15	ENSSVLG00005007911 #16	PRPF4B (ENSSVLG00005007879) #17	FAM50B (ENSSVLG00005007859) #18	PXDC1 (ENSSVLG00005007821) #19	SLC22A23 (ENSSVLG00005007747) #20	PSMG4 (ENSSVLG00005007683) #21	TUBB2B (ENSSVLG00005007652) #22	TUBB2A (ENSSVLG00005007615) #22	ENSSVLG00005007569 #23	RIPK1 (ENSSVLG00005007529) #24	NQO2 (ENSSVLG00005007475) #26	SERPINB6 (ENSSVLG00005007395) #27	ENSSVLG00005007366	ENSSVLG00005006719	ENSSVLG00005006449	SERPINB1 (ENSSVLG00005006417) #28	WRNIP1 (ENSSVLG00005006348) #29	ENSSVLG00005006323	MYLK4 (ENSSVLG00005006200) #30	ENSSVLG00005006132	GMDS (ENSSVLG00005014861) #32	FOXC1 (ENSSVLG00005014837)
Eurasian red squirrel	MODERN SPECIES	16	FARS2 (ENSSVLG00005008373)	ENSSVLG00005008346	LYRM4 (ENSSVLG00005008312)	PPP1R3G (ENSSVLG00005008297)	RPP40 (ENSSVLG00005008216)	CDYL (ENSSVLG00005008158)	ECI2 (ENSSVLG00005008033) #13	ENSSVLG00005007999 #15	ENSSVLG00005007911 #16	PRPF4B (ENSSVLG00005007879) #17	FAM50B (ENSSVLG00005007859) #18	PXDC1 (ENSSVLG00005007821) #19	SLC22A23 (ENSSVLG00005007747) #20	PSMG4 (ENSSVLG00005007683) #21	TUBB2B (ENSSVLG00005007652) #22	TUBB2A (ENSSVLG00005007615) #22	ENSSVLG00005007569 #23	RIPK1 (ENSSVLG00005007529) #24	NQO2 (ENSSVLG00005007475) #26	SERPINB6 (ENSSVLG00005007395) #27	ENSSVLG00005007366	ENSSVLG00005006719	ENSSVLG00005006449	SERPINB1 (ENSSVLG00005006417) #28	WRNIP1 (ENSSVLG00005006348) #29	ENSSVLG00005006323	MYLK4 (ENSSVLG00005006200) #30	ENSSVLG00005006132	GMDS (ENSSVLG00005014861) #32	FOXC1 (ENSSVLG00005014837)	FOXF2 (ENSSVLG00005014790) #34
Eurasian red squirrel	MODERN SPECIES	11	OR4Q3 (ENSSVLG00005002974)	ENSSVLG00005002963	ENSSVLG00005002955	ENSSVLG00005002945	ENSSVLG00005002922	ENSSVLG00005002909	ENSSVLG00005002897	ENSSVLG00005002883	OR11G2 (ENSSVLG00005002875)	ENSSVLG00005002866	OR11H6 (ENSSVLG00005002859)	OR11H4 (ENSSVLG00005002848)	TTC5 (ENSSVLG00005002830)	CCNB1IP1 (ENSSVLG00005002813)	PARP2 (ENSSVLG00005002754)	ENSSVLG00005002730 #22	TEP1 (ENSSVLG00005002176)	KLHL33 (ENSSVLG00005001900)	OSGEP (ENSSVLG00005001856)	APEX1 (ENSSVLG00005001829)	PIP4P1 (ENSSVLG00005001794)	PNP (ENSSVLG00005001773)	RNASE10 (ENSSVLG00005001759)	ENSSVLG00005001749	ENSSVLG00005001741	RNASE11 (ENSSVLG00005001735)	RNASE12 (ENSSVLG00005001727)	OR6S1 (ENSSVLG00005001715)	ANG (ENSSVLG00005001703)	RNASE4 (ENSSVLG00005001692)	ENSSVLG00005001670
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	37					ENSGT00390000000878.h.a	ENSGT00390000014833	ENSGT00940000164650	ENSGT00390000011295.b	ENSGT00940000155602	ENSGT00390000000118	ENSGT00950000183188.B	ENSGT00390000015035	ENSGT00940000154957.B	ENSGT00940000157167.n	ENSGT00940000153470.a.a.a.b.m.a	ENSGT00940000154150.gd.a #22	ENSGT00770000120611.B	ENSGT00390000007287	ENSGT00940000156475	ENSGT00940000158500	ENSGT00940000155880	ENSGT00940000155957	ENSGT00390000009405.a.a.a.b.a.b.a.b	ENSGT00390000015236	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a	ENSGT00940000157315
Marmotini_b	ANCESTRAL SPECIES	26					ENSGT00390000014833	ENSGT00390000011295.b	ENSGT00940000155602	ENSGT00390000000118	ENSGT00950000183188.B	ENSGT00390000015035	ENSGT00940000154957.B	ENSGT00940000157167.n	ENSGT01030000235027	ENSGT00940000154530.w	ENSGT00940000153470.a.a.a.b.m.a	ENSGT00940000154150.gd.a #22	ENSGT00770000120611.B	ENSGT00390000007287	ENSGT00940000156475	ENSGT00940000158500	ENSGT00940000155880	ENSGT00940000155957	ENSGT00390000009405.a.a.a.b.a.b.a.b	ENSGT00390000015236	ENSGT00390000003271	ENSGT00950000182892.a.b.b	ENSGT00940000154431.e.b	ENSGT00940000153305.c.e.b	ENSGT00940000156007	ENSGT00390000017856.a	ENSGT00940000157315
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	78				TOMM7 (ENSSTOG00000008694)	HYCC1 (ENSSTOG00000027983)	KLHL7 (ENSSTOG00000008470)	NUP42 (ENSSTOG00000008486)	GPNMB (ENSSTOG00000008499)	MALSU1 (ENSSTOG00000027376)	IGF2BP3 (ENSSTOG00000008519)	TRA2A (ENSSTOG00000012073)	ENSSTOG00000030692	ENSSTOG00000032668	CCDC126 (ENSSTOG00000021255)	ENSSTOG00000029732	ENSSTOG00000020371 #22	ENSSTOG00000014113	ENSSTOG00000027960 #22	STK31 (ENSSTOG00000003577)	ENSSTOG00000033576	ENSSTOG00000021917	NPY (ENSSTOG00000020410)	PALS2 (ENSSTOG00000001908)	ENSSTOG00000014905	OSBPL3 (ENSSTOG00000001755)	C7orf31 (ENSSTOG00000008859)	NPVF (ENSSTOG00000008873)	NFE2L3 (ENSSTOG00000014758)	ENSSTOG00000006202	CBX3 (ENSSTOG00000006223)	SNX10 (ENSSTOG00000024131)
Squirrel	MODERN SPECIES	78	HOXA1 (ENSSTOG00000024209)	SKAP2 (ENSSTOG00000021247)	SNX10 (ENSSTOG00000024131)	CBX3 (ENSSTOG00000006223)	ENSSTOG00000006202	NFE2L3 (ENSSTOG00000014758)	NPVF (ENSSTOG00000008873)	C7orf31 (ENSSTOG00000008859)	OSBPL3 (ENSSTOG00000001755)	ENSSTOG00000014905	PALS2 (ENSSTOG00000001908)	NPY (ENSSTOG00000020410)	ENSSTOG00000021917	ENSSTOG00000033576	STK31 (ENSSTOG00000003577)	ENSSTOG00000027960 #22	ENSSTOG00000014113	ENSSTOG00000020371 #22	ENSSTOG00000029732	CCDC126 (ENSSTOG00000021255)	ENSSTOG00000032668	ENSSTOG00000030692	TRA2A (ENSSTOG00000012073)	IGF2BP3 (ENSSTOG00000008519)	MALSU1 (ENSSTOG00000027376)	GPNMB (ENSSTOG00000008499)	NUP42 (ENSSTOG00000008486)	KLHL7 (ENSSTOG00000008470)	HYCC1 (ENSSTOG00000027983)	TOMM7 (ENSSTOG00000008694)
Alpin marmot	MODERN SPECIES	26			ENSMMMG00000005021	ENSMMMG00000005025	TOMM7 (ENSMMMG00000005059)	ENSMMMG00000005078	HYCC1 (ENSMMMG00000005151)	ENSMMMG00000005220	KLHL7 (ENSMMMG00000005243)	NUP42 (ENSMMMG00000005252)	GPNMB (ENSMMMG00000005258)	MALSU1 (ENSMMMG00000005281)	IGF2BP3 (ENSMMMG00000005303)	TRA2A (ENSMMMG00000005330)	ENSMMMG00000005357	ENSMMMG00000005362 #22	ENSMMMG00000005429	STK31 (ENSMMMG00000005447)	ENSMMMG00000005635	NPY (ENSMMMG00000005649)	PALS2 (ENSMMMG00000005665)	GSDME (ENSMMMG00000005813)	OSBPL3 (ENSMMMG00000005837)	ENSMMMG00000006125	C7orf31 (ENSMMMG00000006134)	NPVF (ENSMMMG00000006151)	ENSMMMG00000006190	ENSMMMG00000006197	ENSMMMG00000006360	SNX10 (ENSMMMG00000006398)	ENSMMMG00000006429
Marmotini	ANCESTRAL SPECIES	37		ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000155450	ENSGT00390000001319	ENSGT00940000160556	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000154150.gd.b #22	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706 #36	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00730000111762	ENSGT01030000234607.A.a.b.a	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053
Marmotini_b	ANCESTRAL SPECIES	26															ENSGT00940000161703	ENSGT00940000154150.gd.b #22	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706 #36	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00730000111762	ENSGT01030000234607.A.a.b.a	ENSGT00940000161501	ENSGT00390000016168.a	ENSGT00940000158053
Arctic ground squirrel	MODERN SPECIES	499															ABCA13 (ENSUPAG00010000302)	ENSUPAG00010000185 #22	UPP1 (ENSUPAG00010000153)	SUN3 (ENSUPAG00010000131)	C7orf57 (ENSUPAG00010000060)	HUS1 (ENSUPAG00010000045) #36	PKD1L1 (ENSUPAG00010022631)
Squirrel	MODERN SPECIES	78															ENSSTOG00000032455	ENSSTOG00000026135 #22	UPP1 (ENSSTOG00000005502)	C7orf57 (ENSSTOG00000005482)	SUN3 (ENSSTOG00000005471)	HUS1 (ENSSTOG00000027204) #36	ENSSTOG00000005345	TNS3 (ENSSTOG00000015793)	IGFBP3 (ENSSTOG00000008762)	IGFBP1 (ENSSTOG00000008746)	ADCY1 (ENSSTOG00000008713)	ENSSTOG00000015205	RAMP3 (ENSSTOG00000025331)	ENSSTOG00000020680	TBRG4 (ENSSTOG00000008370)	NACAD (ENSSTOG00000022804)	CCM2 (ENSSTOG00000026702)
Alpin marmot	MODERN SPECIES	26	ENSMMMG00000015809	ENSMMMG00000015788	ENSMMMG00000015785	ENSMMMG00000015775	ENSMMMG00000015722	GRB10 (ENSMMMG00000015688)	DDC (ENSMMMG00000015645)	FIGNL1 (ENSMMMG00000015635)	IKZF1 (ENSMMMG00000015562)	SPATA48 (ENSMMMG00000015542)	ZPBP (ENSMMMG00000015506)	VWC2 (ENSMMMG00000015492)	ENSMMMG00000015482	ENSMMMG00000015465	ABCA13 (ENSMMMG00000015281)	ENSMMMG00000015221 #22	UPP1 (ENSMMMG00000015208)	C7orf57 (ENSMMMG00000015182)	SUN3 (ENSMMMG00000015174)	HUS1 (ENSMMMG00000015160) #36	PKD1L1 (ENSMMMG00000015029)	TNS3 (ENSMMMG00000014995)	ENSMMMG00000014987	ENSMMMG00000014980	ENSMMMG00000014975	IGFBP3 (ENSMMMG00000014868)	IGFBP1 (ENSMMMG00000014859)	ADCY1 (ENSMMMG00000014821)	RAMP3 (ENSMMMG00000014813)	ENSMMMG00000014809	ENSMMMG00000014801
Marmotini	ANCESTRAL SPECIES	40	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.hd #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24
Alpin marmot	MODERN SPECIES	36	F13A1 (ENSMMMG00000014594)	NRN1 (ENSMMMG00000014586)	FARS2 (ENSMMMG00000014567)	LYRM4 (ENSMMMG00000014551)	PPP1R3G (ENSMMMG00000014548)	RPP40 (ENSMMMG00000014521)	CDYL (ENSMMMG00000014357)	ECI2 (ENSMMMG00000014301) #13	ENSMMMG00000014296 #15	FAM217A (ENSMMMG00000014281) #16	PRPF4B (ENSMMMG00000014263) #17	FAM50B (ENSMMMG00000014258) #18	ENSMMMG00000014254 #19	ENSMMMG00000014241	SLC22A23 (ENSMMMG00000014224) #20	TUBB2B (ENSMMMG00000014205) #22	BPHL (ENSMMMG00000014194) #23	RIPK1 (ENSMMMG00000014179) #24
Marmotini_b	ANCESTRAL SPECIES	68	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00390000015826.x	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.hd #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	350		PPP1R3G (ENSUPAG00010010716)	RPP40 (ENSUPAG00010010701)	ENSUPAG00010010692	CDYL (ENSUPAG00010010685)	ECI2 (ENSUPAG00010010667) #13	ENSUPAG00010010661 #15	FAM217A (ENSUPAG00010010641) #16	PRPF4B (ENSUPAG00010010629) #17	FAM50B (ENSUPAG00010010626) #18	PXDC1 (ENSUPAG00010010623) #19	ENSUPAG00010010614	SLC22A23 (ENSUPAG00010010597) #20	PSMG4 (ENSUPAG00010010591) #21	ENSUPAG00010010587	TUBB2B (ENSUPAG00010010579) #22	ENSUPAG00010010577 #22	BPHL (ENSUPAG00010010568) #23	RIPK1 (ENSUPAG00010010546) #24
Arctic ground squirrel	MODERN SPECIES	350	PPP1R3G (ENSUPAG00010010716)	RPP40 (ENSUPAG00010010701)	ENSUPAG00010010692	CDYL (ENSUPAG00010010685)	ECI2 (ENSUPAG00010010667) #13	ENSUPAG00010010661 #15	FAM217A (ENSUPAG00010010641) #16	PRPF4B (ENSUPAG00010010629) #17	FAM50B (ENSUPAG00010010626) #18	PXDC1 (ENSUPAG00010010623) #19	ENSUPAG00010010614	SLC22A23 (ENSUPAG00010010597) #20	PSMG4 (ENSUPAG00010010591) #21	ENSUPAG00010010587	TUBB2B (ENSUPAG00010010579) #22	ENSUPAG00010010577 #22	BPHL (ENSUPAG00010010568) #23	RIPK1 (ENSUPAG00010010546) #24
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	134	ENSSTOG00000024647	FARS2 (ENSSTOG00000012156)	LYRM4 (ENSSTOG00000026736)	PPP1R3G (ENSSTOG00000021636)	RPP40 (ENSSTOG00000011199)	CDYL (ENSSTOG00000011187)	ECI2 (ENSSTOG00000004305) #13	ENSSTOG00000030065 #15	FAM217A (ENSSTOG00000030768) #16	PRPF4B (ENSSTOG00000004256) #17	FAM50B (ENSSTOG00000026905) #18	PXDC1 (ENSSTOG00000027169) #19	ENSSTOG00000030156	SLC22A23 (ENSSTOG00000031179) #20	PSMG4 (ENSSTOG00000020187) #21	TUBB2B (ENSSTOG00000022186) #22	TUBB2A (ENSSTOG00000024688) #22	BPHL (ENSSTOG00000001554) #23	RIPK1 (ENSSTOG00000001542) #24
Squirrel	MODERN SPECIES	134	FARS2 (ENSSTOG00000012156)	LYRM4 (ENSSTOG00000026736)	PPP1R3G (ENSSTOG00000021636)	RPP40 (ENSSTOG00000011199)	CDYL (ENSSTOG00000011187)	ECI2 (ENSSTOG00000004305) #13	ENSSTOG00000030065 #15	FAM217A (ENSSTOG00000030768) #16	PRPF4B (ENSSTOG00000004256) #17	FAM50B (ENSSTOG00000026905) #18	PXDC1 (ENSSTOG00000027169) #19	ENSSTOG00000030156	SLC22A23 (ENSSTOG00000031179) #20	PSMG4 (ENSSTOG00000020187) #21	TUBB2B (ENSSTOG00000022186) #22	TUBB2A (ENSSTOG00000024688) #22	BPHL (ENSSTOG00000001554) #23	RIPK1 (ENSSTOG00000001542) #24
Hystricomorpha	ANCESTRAL SPECIES	42	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000036093	ENSHGLG00000020343	ENSHGLG00000004389	ENSHGLG00000038262	PPP1R3G (ENSHGLG00000041006)	ENSHGLG00000040678	RPP40 (ENSHGLG00000004871)	ENSHGLG00000005262	ENSHGLG00000038867	ECI2 (ENSHGLG00000005614) #13	PRPF4B (ENSHGLG00000005945) #17	FAM50B (ENSHGLG00000006289) #18	PXDC1 (ENSHGLG00000006650) #19	SLC22A23 (ENSHGLG00000007033) #20	ENSHGLG00000007366	TUBB2B (ENSHGLG00000007696) #22	ENSHGLG00000043950 #22	BPHL (ENSHGLG00000008018) #23	RIPK1 (ENSHGLG00000008330) #24	ENSHGLG00000045779 #26	SERPINB6 (ENSHGLG00000015274) #27	ENSHGLG00000017487	SERPINB1 (ENSHGLG00000032738) #28	WRNIP1 (ENSHGLG00000014216) #29	ENSHGLG00000040911	ENSHGLG00000014288 #30	ENSHGLG00000033368	GMDS (ENSHGLG00000014454) #32	FOXC1 (ENSHGLG00000040750)	FOXF2 (ENSHGLG00000007914) #34	FOXQ1 (ENSHGLG00000007951) #35
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000020343	ENSHGLG00000004389	ENSHGLG00000038262	PPP1R3G (ENSHGLG00000041006)	ENSHGLG00000040678	RPP40 (ENSHGLG00000004871)	ENSHGLG00000005262	ENSHGLG00000038867	ECI2 (ENSHGLG00000005614) #13	PRPF4B (ENSHGLG00000005945) #17	FAM50B (ENSHGLG00000006289) #18	PXDC1 (ENSHGLG00000006650) #19	SLC22A23 (ENSHGLG00000007033) #20	ENSHGLG00000007366	TUBB2B (ENSHGLG00000007696) #22	ENSHGLG00000043950 #22	BPHL (ENSHGLG00000008018) #23	RIPK1 (ENSHGLG00000008330) #24	ENSHGLG00000045779 #26	SERPINB6 (ENSHGLG00000015274) #27	ENSHGLG00000017487	SERPINB1 (ENSHGLG00000032738) #28	WRNIP1 (ENSHGLG00000014216) #29	ENSHGLG00000040911	ENSHGLG00000014288 #30	ENSHGLG00000033368	GMDS (ENSHGLG00000014454) #32	FOXC1 (ENSHGLG00000040750)	FOXF2 (ENSHGLG00000007914) #34	FOXQ1 (ENSHGLG00000007951) #35	ENSHGLG00000044630
Hystricomorpha_a	ANCESTRAL SPECIES	48	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B.b #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153	ENSGT01100000263474.a.b.b.f
Guinea pig	MODERN SPECIES	38	SSR1 (ENSCPOG00000039953)	RREB1 (ENSCPOG00000014380)	LY86 (ENSCPOG00000012001)	F13A1 (ENSCPOG00000005276)	NRN1 (ENSCPOG00000021547)	FARS2 (ENSCPOG00000003994)	LYRM4 (ENSCPOG00000038899)	RPP40 (ENSCPOG00000005855)	CDYL (ENSCPOG00000005847)	ECI2 (ENSCPOG00000004788) #13	PRPF4B (ENSCPOG00000004775) #17	FAM50B (ENSCPOG00000000148) #18	PXDC1 (ENSCPOG00000038768) #19	SLC22A23 (ENSCPOG00000010470) #20	PSMG4 (ENSCPOG00000026747) #21	TUBB2B (ENSCPOG00000039814) #22	BPHL (ENSCPOG00000036729) #23	RIPK1 (ENSCPOG00000005195) #24	NQO2 (ENSCPOG00000033205) #26	SERPINB6 (ENSCPOG00000008254) #27	ENSCPOG00000024499	ENSCPOG00000040114	ENSCPOG00000037377	ENSCPOG00000021276	ENSCPOG00000030607
Hystricomorpha_b	ANCESTRAL SPECIES	58	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000170978	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Degu	DUPLICATION
Degu	MODERN SPECIES	61	ENSODEG00000010547	PLEKHH2 (ENSODEG00000012982)	DYNC2LI1 (ENSODEG00000011054)	ABCG5 (ENSODEG00000010535)	ABCG8 (ENSODEG00000012555)	LRPPRC (ENSODEG00000011211)	ENSODEG00000019947	ENSODEG00000020039	ENSODEG00000011737	PPM1B (ENSODEG00000012106)	SLC3A1 (ENSODEG00000011768)	PREPL (ENSODEG00000012834)	ENSODEG00000019894	ENSODEG00000019899	CAMKMT (ENSODEG00000013111)	ENSODEG00000019927 #22	ENSODEG00000019924	SIX3 (ENSODEG00000011611)	SIX2 (ENSODEG00000011970)	ENSODEG00000012336	SRBD1 (ENSODEG00000012095)	PRKCE (ENSODEG00000011779)	EPAS1 (ENSODEG00000011675)	RHOQ (ENSODEG00000012565)	ENSODEG00000013963	ENSODEG00000011714	SOCS5 (ENSODEG00000019978)	ENSODEG00000011724	TTC7A (ENSODEG00000011584)	STPG4 (ENSODEG00000012221)	CALM2 (ENSODEG00000013273)
Degu	MODERN SPECIES	64	NRN1 (ENSODEG00000006426)	FARS2 (ENSODEG00000006881)	ENSODEG00000019555	LYRM4 (ENSODEG00000005678)	ENSODEG00000006170	CDYL (ENSODEG00000006073)	ENSODEG00000019345	ECI2 (ENSODEG00000007068) #13	FAM217A (ENSODEG00000006489) #16	PRPF4B (ENSODEG00000006156) #17	PXDC1 (ENSODEG00000006864) #19	SLC22A23 (ENSODEG00000007173) #20	PSMG4 (ENSODEG00000006109) #21	ENSODEG00000006987 #22	ENSODEG00000006037	TUBB2A (ENSODEG00000006689) #22	BPHL (ENSODEG00000008397) #23	RIPK1 (ENSODEG00000007668) #24	NQO2 (ENSODEG00000006400) #26	SERPINB6 (ENSODEG00000008291) #27	ENSODEG00000006244	ENSODEG00000006648	ENSODEG00000006906	SERPINB1 (ENSODEG00000010241) #28	WRNIP1 (ENSODEG00000006805) #29	MYLK4 (ENSODEG00000006897) #30	GMDS (ENSODEG00000009960) #32	ENSODEG00000007557	FOXC1 (ENSODEG00000006912)	FOXF2 (ENSODEG00000007607) #34	EXOC2 (ENSODEG00000006797) #37
Degu	DUPLICATION
Degu	MODERN SPECIES	64	LY86 (ENSODEG00000005843)	F13A1 (ENSODEG00000006301)	NRN1 (ENSODEG00000006426)	FARS2 (ENSODEG00000006881)	ENSODEG00000019555	LYRM4 (ENSODEG00000005678)	ENSODEG00000006170	CDYL (ENSODEG00000006073)	ENSODEG00000019345	ECI2 (ENSODEG00000007068) #13	FAM217A (ENSODEG00000006489) #16	PRPF4B (ENSODEG00000006156) #17	PXDC1 (ENSODEG00000006864) #19	SLC22A23 (ENSODEG00000007173) #20	PSMG4 (ENSODEG00000006109) #21	ENSODEG00000006987 #22	ENSODEG00000006037	TUBB2A (ENSODEG00000006689) #22	BPHL (ENSODEG00000008397) #23	RIPK1 (ENSODEG00000007668) #24	NQO2 (ENSODEG00000006400) #26	SERPINB6 (ENSODEG00000008291) #27	ENSODEG00000006244	ENSODEG00000006648	ENSODEG00000006906	SERPINB1 (ENSODEG00000010241) #28	WRNIP1 (ENSODEG00000006805) #29	MYLK4 (ENSODEG00000006897) #30	GMDS (ENSODEG00000009960) #32	ENSODEG00000007557	FOXC1 (ENSODEG00000006912)
Degu	MODERN SPECIES	62	HSCB (ENSODEG00000017352)	XBP1 (ENSODEG00000017362)	ZNRF3 (ENSODEG00000017168)	KREMEN1 (ENSODEG00000017265)	ENSODEG00000020526	EMID1 (ENSODEG00000017465)	ENSODEG00000017244	RHBDD3 (ENSODEG00000017373)	ENSODEG00000017496	GAS2L1 (ENSODEG00000017194)	RASL10A (ENSODEG00000017393)	AP1B1 (ENSODEG00000017338)	NEFH (ENSODEG00000017433)	ENSODEG00000017650	NIPSNAP1 (ENSODEG00000017189)	ENSODEG00000017494 #22	NF2 (ENSODEG00000017517)	CABP7 (ENSODEG00000017415)	ZMAT5 (ENSODEG00000017389)	ENSODEG00000017651	ASCC2 (ENSODEG00000017546)	ENSODEG00000017520	ENSODEG00000017459	KIF21A (ENSODEG00000017431)	ENSODEG00000017452	CPNE8 (ENSODEG00000017711)	ENSODEG00000020455	ENSODEG00000017594	SYT10 (ENSODEG00000017446)
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	172	LY86 (ENSCLAG00000002671)	F13A1 (ENSCLAG00000003000)	NRN1 (ENSCLAG00000011260)	FARS2 (ENSCLAG00000017316)	ENSCLAG00000011017	PPP1R3G (ENSCLAG00000012673)	RPP40 (ENSCLAG00000003235)	CDYL (ENSCLAG00000003356)	ECI2 (ENSCLAG00000003560) #13	ENSCLAG00000003863 #15	FAM217A (ENSCLAG00000004051) #16	PRPF4B (ENSCLAG00000004201) #17	PXDC1 (ENSCLAG00000002715) #19	SLC22A23 (ENSCLAG00000002845) #20	PSMG4 (ENSCLAG00000003148) #21	TUBB2B (ENSCLAG00000003177) #22	BPHL (ENSCLAG00000003241) #23	ENSCLAG00000003326 #22	RIPK1 (ENSCLAG00000002300) #24	NQO2 (ENSCLAG00000002417) #26	SERPINB6 (ENSCLAG00000002474) #27	ENSCLAG00000002657	ENSCLAG00000002501	ENSCLAG00000007069	ENSCLAG00000007653	SERPINB1 (ENSCLAG00000008637) #28	WRNIP1 (ENSCLAG00000006960) #29	MYLK4 (ENSCLAG00000007226) #30	GMDS (ENSCLAG00000002602) #32	FOXF2 (ENSCLAG00000002746) #34	EXOC2 (ENSCLAG00000003072) #37
Long-tailed chinchilla	MODERN SPECIES	172	NRN1 (ENSCLAG00000011260)	FARS2 (ENSCLAG00000017316)	ENSCLAG00000011017	PPP1R3G (ENSCLAG00000012673)	RPP40 (ENSCLAG00000003235)	CDYL (ENSCLAG00000003356)	ECI2 (ENSCLAG00000003560) #13	ENSCLAG00000003863 #15	FAM217A (ENSCLAG00000004051) #16	PRPF4B (ENSCLAG00000004201) #17	PXDC1 (ENSCLAG00000002715) #19	SLC22A23 (ENSCLAG00000002845) #20	PSMG4 (ENSCLAG00000003148) #21	TUBB2B (ENSCLAG00000003177) #22	BPHL (ENSCLAG00000003241) #23	ENSCLAG00000003326 #22	RIPK1 (ENSCLAG00000002300) #24	NQO2 (ENSCLAG00000002417) #26	SERPINB6 (ENSCLAG00000002474) #27	ENSCLAG00000002657	ENSCLAG00000002501	ENSCLAG00000007069	ENSCLAG00000007653	SERPINB1 (ENSCLAG00000008637) #28	WRNIP1 (ENSCLAG00000006960) #29	MYLK4 (ENSCLAG00000007226) #30	GMDS (ENSCLAG00000002602) #32	FOXF2 (ENSCLAG00000002746) #34	EXOC2 (ENSCLAG00000003072) #37	IRF4 (ENSCLAG00000004136)	DUSP22 (ENSCLAG00000004363)
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Lesser Egyptian jerboa	MODERN SPECIES	129	Ly86 (ENSJJAG00000022504)	F13a1 (ENSJJAG00000000070)	Nrn1 (ENSJJAG00000000725)	Fars2 (ENSJJAG00000002799)	Lyrm4 (ENSJJAG00000004657)	Rpp40 (ENSJJAG00000020629)	Cdyl (ENSJJAG00000000586)	ENSJJAG00000001626	ENSJJAG00000004231 #13	Tex56 (ENSJJAG00000008898) #15	ENSJJAG00000010338 #16	Prpf4b (ENSJJAG00000011217) #17	Pxdc1 (ENSJJAG00000012785) #19	Slc22a23 (ENSJJAG00000005711) #20	Psmg4 (ENSJJAG00000011408) #21	Tubb2b (ENSJJAG00000011739) #22	Bphl (ENSJJAG00000012949) #23	Ripk1 (ENSJJAG00000013771) #24	Nqo2 (ENSJJAG00000015012) #26	ENSJJAG00000015735 #27	ENSJJAG00000017382	ENSJJAG00000010900 #28	Wrnip1 (ENSJJAG00000011299) #29	ENSJJAG00000013456 #30	Gmds (ENSJJAG00000015490) #32	ENSJJAG00000015833	Foxf2 (ENSJJAG00000017530) #34	ENSJJAG00000017878 #37	Irf4 (ENSJJAG00000019182)	Dusp22 (ENSJJAG00000019867)
Muroidea	ANCESTRAL SPECIES	15	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	764	Rreb1 (ENSNGAG00000021506)	Ly86 (ENSNGAG00000011116)	F13a1 (ENSNGAG00000022897)	Nrn1 (ENSNGAG00000018954)	Fars2 (ENSNGAG00000021589)	Lyrm4 (ENSNGAG00000024207)	ENSNGAG00000023955	Cdyl (ENSNGAG00000023764)	ENSNGAG00000020575 #13	Prpf4b (ENSNGAG00000023322) #17	ENSNGAG00000009942	Fam50b (ENSNGAG00000024017) #18	Pxdc1 (ENSNGAG00000004640) #19	Slc22a23 (ENSNGAG00000021185) #20	Psmg4 (ENSNGAG00000016957) #21	Tubb2b (ENSNGAG00000021437) #22	Tubb2a (ENSNGAG00000020746) #22	Bphl (ENSNGAG00000024371) #23	Ripk1 (ENSNGAG00000010576) #24
Upper Galilee mountains blind mole rat	MODERN SPECIES	764	Ly86 (ENSNGAG00000011116)	F13a1 (ENSNGAG00000022897)	Nrn1 (ENSNGAG00000018954)	Fars2 (ENSNGAG00000021589)	Lyrm4 (ENSNGAG00000024207)	ENSNGAG00000023955	Cdyl (ENSNGAG00000023764)	ENSNGAG00000020575 #13	Prpf4b (ENSNGAG00000023322) #17	ENSNGAG00000009942	Fam50b (ENSNGAG00000024017) #18	Pxdc1 (ENSNGAG00000004640) #19	Slc22a23 (ENSNGAG00000021185) #20	Psmg4 (ENSNGAG00000016957) #21	Tubb2b (ENSNGAG00000021437) #22	Tubb2a (ENSNGAG00000020746) #22	Bphl (ENSNGAG00000024371) #23	Ripk1 (ENSNGAG00000010576) #24
Muroidea_A	ANCESTRAL SPECIES	14	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q #13	ENSGT00940000155105.r #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154519.g.b.a #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Murinae	ANCESTRAL SPECIES	21	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q #13	ENSGT00940000155105.r #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154573.k.b #28	ENSGT00940000154931.d.o.a.b	ENSGT00940000154931.d.o.a.a	ENSGT00940000154519.g.b.a.b #27	ENSGT00940000154573.l #28	ENSGT00940000154573.k.a #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b
Rat	DUPLICATION
Rat	MODERN SPECIES	8	Fars2 (ENSRNOG00000016135)	Lyrm4 (ENSRNOG00000047970)	Ppp1r3g (ENSRNOG00000016222)	Rpp40 (ENSRNOG00000016226)	Cdyl (ENSRNOG00000032215)	Eci2 (ENSRNOG00000066714) #13	Eci3 (ENSRNOG00000029549) #13	Tex56p (ENSRNOG00000033763) #15	Fam217a (ENSRNOG00000016672) #16	Prpf4b (ENSRNOG00000016705) #17	Fam50b (ENSRNOG00000017083) #18	Pxdc1 (ENSRNOG00000017093) #19	Slc22a23 (ENSRNOG00000017210) #20	Psmg4 (ENSRNOG00000039265) #21	Tubb2a (ENSRNOG00000017558) #22	Tubb2b (ENSRNOG00000017445) #22	Bphl (ENSRNOG00000017577) #23	Ripk1 (ENSRNOG00000017787) #24	Serpinb6a (ENSRNOG00000017962) #27	Nqo2 (ENSRNOG00000017820) #26	RGD1564786 (ENSRNOG00000063990) #27	Serpinb6e (ENSRNOG00000070025) #27	Serpinb9d (ENSRNOG00000022139)	Serpinb1b (ENSRNOG00000034229) #28	RGD1562844 (ENSRNOG00000048576)	Serpinb9 (ENSRNOG00000033772)	Serpinb6b (ENSRNOG00000016420) #27	Serpinb1a (ENSRNOG00000016581) #28	Wrnip1 (ENSRNOG00000017040) #29	ENSRNOG00000063699	Mylk4 (ENSRNOG00000070083) #30
Rat	MODERN SPECIES	8	Nrn1 (ENSRNOG00000050767)	Fars2 (ENSRNOG00000016135)	Lyrm4 (ENSRNOG00000047970)	Ppp1r3g (ENSRNOG00000016222)	Rpp40 (ENSRNOG00000016226)	Cdyl (ENSRNOG00000032215)	Eci2 (ENSRNOG00000066714) #13	Eci3 (ENSRNOG00000029549) #13	Tex56p (ENSRNOG00000033763) #15	Fam217a (ENSRNOG00000016672) #16	Prpf4b (ENSRNOG00000016705) #17	Fam50b (ENSRNOG00000017083) #18	Pxdc1 (ENSRNOG00000017093) #19	Slc22a23 (ENSRNOG00000017210) #20	Psmg4 (ENSRNOG00000039265) #21	Tubb2a (ENSRNOG00000017558) #22	Tubb2b (ENSRNOG00000017445) #22	Bphl (ENSRNOG00000017577) #23	Ripk1 (ENSRNOG00000017787) #24	Serpinb6a (ENSRNOG00000017962) #27	Nqo2 (ENSRNOG00000017820) #26	RGD1564786 (ENSRNOG00000063990) #27	Serpinb6e (ENSRNOG00000070025) #27	Serpinb9d (ENSRNOG00000022139)	Serpinb1b (ENSRNOG00000034229) #28	RGD1562844 (ENSRNOG00000048576)	Serpinb9 (ENSRNOG00000033772)	Serpinb6b (ENSRNOG00000016420) #27	Serpinb1a (ENSRNOG00000016581) #28	Wrnip1 (ENSRNOG00000017040) #29	ENSRNOG00000063699
Mus	ANCESTRAL SPECIES	18	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q.a #13	ENSGT00940000155105.q.b #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154519.g.b.a.a.a.a #27	ENSGT00940000154519.g.b.a.a.b.a #27	ENSGT00940000154519.g.b.a.a.a.b.a #27	ENSGT00940000154931.d.o.b	ENSGT00940000154931.d.p	ENSGT00940000154931.d.o.a.a	ENSGT00940000154519.g.b.a.b #27	ENSGT00940000154931.d.o.a.b	ENSGT00940000154573.k.b #28	ENSGT00940000154573.k.a #28	ENSGT01000000215059
Mus_A	ANCESTRAL SPECIES	14	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q.a #13	ENSGT00940000155105.q.b #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154519.g.b.a.a.a.a #27	ENSGT00940000154519.g.a ##27	ENSGT00940000154931.d.o.a.a	ENSGT00940000154519.g.b.a.b #27	ENSGT00940000154573.l #28	ENSGT00940000154931.d.o.a.b	ENSGT00940000154573.k.b #28	ENSGT00940000154573.k.a #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30
Ryukyu mouse	MODERN SPECIES	4	Nrn1 (MGP_CAROLIEiJ_G0018433)	Fars2 (MGP_CAROLIEiJ_G0018432)	Lyrm4 (MGP_CAROLIEiJ_G0018431)	Ppp1r3g (MGP_CAROLIEiJ_G0018430)	Rpp40 (MGP_CAROLIEiJ_G0018429)	Cdyl (MGP_CAROLIEiJ_G0018428)	Eci2 (MGP_CAROLIEiJ_G0018427) #13	Eci3 (MGP_CAROLIEiJ_G0018426) #13	Tex56 (MGP_CAROLIEiJ_G0018425) #15	MGP_CAROLIEiJ_G0018424 #16	Prpf4b (MGP_CAROLIEiJ_G0018423) #17	Fam50b (MGP_CAROLIEiJ_G0018422) #18	Pxdc1 (MGP_CAROLIEiJ_G0018421) #19	Slc22a23 (MGP_CAROLIEiJ_G0018420) #20	Psmg4 (MGP_CAROLIEiJ_G0018419) #21	MGP_CAROLIEiJ_G0018418 #22	Bphl (MGP_CAROLIEiJ_G0018417) #23	Ripk1 (MGP_CAROLIEiJ_G0018416) #24	Nqo2 (MGP_CAROLIEiJ_G0018415) #26	Serpinb6a (MGP_CAROLIEiJ_G0018414) #27	Serpinb6c (MGP_CAROLIEiJ_G0018413) #27	MGP_CAROLIEiJ_G0018412 ##27	MGP_CAROLIEiJ_G0018411	MGP_CAROLIEiJ_G0018410	MGP_CAROLIEiJ_G0018409	Serpinb9 (MGP_CAROLIEiJ_G0018408)	Serpinb6b (MGP_CAROLIEiJ_G0018407) #27	MGP_CAROLIEiJ_G0018406 #28	Serpinb1a (MGP_CAROLIEiJ_G0018405) #28	MGP_CAROLIEiJ_G0018404	Wrnip1 (MGP_CAROLIEiJ_G0018403) #29
Mus_B	ANCESTRAL SPECIES	13	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q.a #13	ENSGT00940000155105.q.b #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154519.g.b.a.a.a.a #27	ENSGT00940000154519.g.b.a.a.b.a #27	ENSGT00940000154519.g.b.a.a.a.b.a #27	ENSGT00940000154931.d.o.b.a.a	ENSGT00940000154931.d.o.b.b	ENSGT00940000154931.d.p	ENSGT00940000154573.k.b #28	ENSGT00940000154931.d.o.a.b	ENSGT00940000154931.d.o.a.a	ENSGT00940000154519.g.b.a.b #27	ENSGT00940000154573.l #28
Mouse	DUPLICATION
Mouse	MODERN SPECIES	4	Nrn1 (ENSMUSG00000039114)	Fars2 (ENSMUSG00000021420)	Lyrm4 (ENSMUSG00000046573)	Ppp1r3g (ENSMUSG00000050423)	Rpp40 (ENSMUSG00000021418)	Cdyl (ENSMUSG00000059288)	Eci2 (ENSMUSG00000021417) #13	Eci3 (ENSMUSG00000021416) #13	Tex56 (ENSMUSG00000021415) #15	Fam217a (ENSMUSG00000021414) #16	Prpf4b (ENSMUSG00000021413) #17	Fam50b (ENSMUSG00000038246) #18	Pxdc1 (ENSMUSG00000021411) #19	Slc22a23 (ENSMUSG00000038267) #20	Psmg4 (ENSMUSG00000071451) #21	Tubb2b (ENSMUSG00000045136) #22	Tubb2a (ENSMUSG00000058672) #22	Bphl (ENSMUSG00000038286) #23	Ripk1 (ENSMUSG00000021408) #24	Nqo2 (ENSMUSG00000046949) #26	Serpinb6a (ENSMUSG00000060147) #27	Serpinb6c (ENSMUSG00000052180) #27	Serpinb6e (ENSMUSG00000069248) #27	Serpinb6d (ENSMUSG00000047889) #27	Serpinb9g (ENSMUSG00000057726)	Serpinb9h (ENSMUSG00000071452)	Serpinb9f (ENSMUSG00000038327)	Serpinb9e (ENSMUSG00000062342)	Serpinb9d (ENSMUSG00000054266)	Serpinb9c (ENSMUSG00000021404)	Serpinb1b (ENSMUSG00000051029) #28
Mouse	MODERN SPECIES	4	Fars2 (ENSMUSG00000021420)	Lyrm4 (ENSMUSG00000046573)	Ppp1r3g (ENSMUSG00000050423)	Rpp40 (ENSMUSG00000021418)	Cdyl (ENSMUSG00000059288)	Eci2 (ENSMUSG00000021417) #13	Eci3 (ENSMUSG00000021416) #13	Tex56 (ENSMUSG00000021415) #15	Fam217a (ENSMUSG00000021414) #16	Prpf4b (ENSMUSG00000021413) #17	Fam50b (ENSMUSG00000038246) #18	Pxdc1 (ENSMUSG00000021411) #19	Slc22a23 (ENSMUSG00000038267) #20	Psmg4 (ENSMUSG00000071451) #21	Tubb2b (ENSMUSG00000045136) #22	Tubb2a (ENSMUSG00000058672) #22	Bphl (ENSMUSG00000038286) #23	Ripk1 (ENSMUSG00000021408) #24	Nqo2 (ENSMUSG00000046949) #26	Serpinb6a (ENSMUSG00000060147) #27	Serpinb6c (ENSMUSG00000052180) #27	Serpinb6e (ENSMUSG00000069248) #27	Serpinb6d (ENSMUSG00000047889) #27	Serpinb9g (ENSMUSG00000057726)	Serpinb9h (ENSMUSG00000071452)	Serpinb9f (ENSMUSG00000038327)	Serpinb9e (ENSMUSG00000062342)	Serpinb9d (ENSMUSG00000054266)	Serpinb9c (ENSMUSG00000021404)	Serpinb1b (ENSMUSG00000051029) #28	Serpinb9b (ENSMUSG00000021403)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q.a #13	ENSGT00940000155105.q.b #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.b #27	ENSGT00940000154519.g.b.a.a.a.a #27	ENSGT00940000154519.g.b.a.a.b.a #27	ENSGT00940000154519.g.b.a.a.a.b.a #27	ENSGT00940000154931.d.o.b.a.a	ENSGT00940000154931.d.o.b.a.b	ENSGT00940000154931.d.o.b.b	ENSGT00940000154931.d.p	ENSGT00940000154573.k.b #28	ENSGT00940000154931.d.o.a.b	ENSGT00940000154931.d.o.a.a	ENSGT00940000154519.g.b.a.b #27
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2870															Btbd3 (ENSMSIG00000003269)	ENSMSIG00000003305 #22	ENSMSIG00000003421
Steppe mouse	MODERN SPECIES	2975							ENSMSIG00000002713 #13	Tex56 (ENSMSIG00000002912) #15	Fam217a (ENSMSIG00000002942) #16	Prpf4b (ENSMSIG00000003035) #17	ENSMSIG00000003077	Fam50b (ENSMSIG00000003082) #18	Pxdc1 (ENSMSIG00000003089) #19	Slc22a23 (ENSMSIG00000003104) #20	Psmg4 (ENSMSIG00000003186) #21	Tubb2a (ENSMSIG00000003218) #22	Bphl (ENSMSIG00000003262) #23	Ripk1 (ENSMSIG00000003307) #24	Nqo2 (ENSMSIG00000003346) #26	Serpinb6a (ENSMSIG00000003400) #27	Serpinb6c (ENSMSIG00000003508) #27	Serpinb6e (ENSMSIG00000003547) #27	Serpinb6d (ENSMSIG00000003590) #27
spretus	DUPLICATION
spretus	DUPLICATION
spretus	MODERN SPECIES	4	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #13	MGP_SPRETEiJ_G0019302 #13	Tex56 (MGP_SPRETEiJ_G0019301) #15	MGP_SPRETEiJ_G0019300 #16	Prpf4b (MGP_SPRETEiJ_G0019299) #17	Fam50b (MGP_SPRETEiJ_G0019298) #18	Pxdc1 (MGP_SPRETEiJ_G0019297) #19	Slc22a23 (MGP_SPRETEiJ_G0019296) #20	Psmg4 (MGP_SPRETEiJ_G0019295) #21	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #27	Serpinb6c (MGP_SPRETEiJ_G0019287) #27	MGP_SPRETEiJ_G0019286 ##27	Serpinb6d (MGP_SPRETEiJ_G0019285) #27	MGP_SPRETEiJ_G0019284	MGP_SPRETEiJ_G0019283	MGP_SPRETEiJ_G0019282	MGP_SPRETEiJ_G0019281	MGP_SPRETEiJ_G0019280	Serpinb9c (MGP_SPRETEiJ_G0019279)	MGP_SPRETEiJ_G0019278	Serpinb9 (MGP_SPRETEiJ_G0019277)
spretus	MODERN SPECIES	4	Cdyl (MGP_SPRETEiJ_G0019308)	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #13	MGP_SPRETEiJ_G0019302 #13	Tex56 (MGP_SPRETEiJ_G0019301) #15	MGP_SPRETEiJ_G0019300 #16	Prpf4b (MGP_SPRETEiJ_G0019299) #17	Fam50b (MGP_SPRETEiJ_G0019298) #18	Pxdc1 (MGP_SPRETEiJ_G0019297) #19	Slc22a23 (MGP_SPRETEiJ_G0019296) #20	Psmg4 (MGP_SPRETEiJ_G0019295) #21	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #27	Serpinb6c (MGP_SPRETEiJ_G0019287) #27	MGP_SPRETEiJ_G0019286 ##27	Serpinb6d (MGP_SPRETEiJ_G0019285) #27	MGP_SPRETEiJ_G0019284	MGP_SPRETEiJ_G0019283	MGP_SPRETEiJ_G0019282	MGP_SPRETEiJ_G0019281	MGP_SPRETEiJ_G0019280	Serpinb9c (MGP_SPRETEiJ_G0019279)	MGP_SPRETEiJ_G0019278
spretus	MODERN SPECIES	4	Rpp40 (MGP_SPRETEiJ_G0019309)	Cdyl (MGP_SPRETEiJ_G0019308)	MGP_SPRETEiJ_G0019307	MGP_SPRETEiJ_G0019306	MGP_SPRETEiJ_G0019305	MGP_SPRETEiJ_G0019304	MGP_SPRETEiJ_G0019303 #13	MGP_SPRETEiJ_G0019302 #13	Tex56 (MGP_SPRETEiJ_G0019301) #15	MGP_SPRETEiJ_G0019300 #16	Prpf4b (MGP_SPRETEiJ_G0019299) #17	Fam50b (MGP_SPRETEiJ_G0019298) #18	Pxdc1 (MGP_SPRETEiJ_G0019297) #19	Slc22a23 (MGP_SPRETEiJ_G0019296) #20	Psmg4 (MGP_SPRETEiJ_G0019295) #21	MGP_SPRETEiJ_G0019294 #22	MGP_SPRETEiJ_G0019293 #22	MGP_SPRETEiJ_G0019292 #22	Bphl (MGP_SPRETEiJ_G0019291) #23	Ripk1 (MGP_SPRETEiJ_G0019290) #24	Nqo2 (MGP_SPRETEiJ_G0019289) #26	Serpinb6a (MGP_SPRETEiJ_G0019288) #27	Serpinb6c (MGP_SPRETEiJ_G0019287) #27	MGP_SPRETEiJ_G0019286 ##27	Serpinb6d (MGP_SPRETEiJ_G0019285) #27	MGP_SPRETEiJ_G0019284	MGP_SPRETEiJ_G0019283	MGP_SPRETEiJ_G0019282	MGP_SPRETEiJ_G0019281	MGP_SPRETEiJ_G0019280	Serpinb9c (MGP_SPRETEiJ_G0019279)
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	7	Fars2 (MGP_PahariEiJ_G0019500)	Lyrm4 (MGP_PahariEiJ_G0019499)	Ppp1r3g (MGP_PahariEiJ_G0019498)	Rpp40 (MGP_PahariEiJ_G0019497)	Cdyl (MGP_PahariEiJ_G0019496)	Eci2 (MGP_PahariEiJ_G0019495) #13	Eci3 (MGP_PahariEiJ_G0019494) #13	Tex56 (MGP_PahariEiJ_G0019493) #15	MGP_PahariEiJ_G0019492 #16	Prpf4b (MGP_PahariEiJ_G0019491) #17	Fam50b (MGP_PahariEiJ_G0019490) #18	Pxdc1 (MGP_PahariEiJ_G0019489) #19	Slc22a23 (MGP_PahariEiJ_G0019488) #20	Psmg4 (MGP_PahariEiJ_G0019487) #21	Tubb2b (MGP_PahariEiJ_G0019486) #22	MGP_PahariEiJ_G0019485 #22	Bphl (MGP_PahariEiJ_G0019484) #23	Ripk1 (MGP_PahariEiJ_G0019483) #24	Nqo2 (MGP_PahariEiJ_G0019482) #26	Serpinb6a (MGP_PahariEiJ_G0019481) #27	Serpinb6c (MGP_PahariEiJ_G0019480) #27	Serpinb6e (MGP_PahariEiJ_G0019479) #27	Serpinb6d (MGP_PahariEiJ_G0019478) #27	MGP_PahariEiJ_G0019477	MGP_PahariEiJ_G0019476	MGP_PahariEiJ_G0019475	MGP_PahariEiJ_G0019474	Serpinb9c (MGP_PahariEiJ_G0019473)	Serpinb9 (MGP_PahariEiJ_G0019472)	Serpinb6b (MGP_PahariEiJ_G0019471) #27	MGP_PahariEiJ_G0019470 #28
Shrew mouse	MODERN SPECIES	7	Nrn1 (MGP_PahariEiJ_G0019501)	Fars2 (MGP_PahariEiJ_G0019500)	Lyrm4 (MGP_PahariEiJ_G0019499)	Ppp1r3g (MGP_PahariEiJ_G0019498)	Rpp40 (MGP_PahariEiJ_G0019497)	Cdyl (MGP_PahariEiJ_G0019496)	Eci2 (MGP_PahariEiJ_G0019495) #13	Eci3 (MGP_PahariEiJ_G0019494) #13	Tex56 (MGP_PahariEiJ_G0019493) #15	MGP_PahariEiJ_G0019492 #16	Prpf4b (MGP_PahariEiJ_G0019491) #17	Fam50b (MGP_PahariEiJ_G0019490) #18	Pxdc1 (MGP_PahariEiJ_G0019489) #19	Slc22a23 (MGP_PahariEiJ_G0019488) #20	Psmg4 (MGP_PahariEiJ_G0019487) #21	Tubb2b (MGP_PahariEiJ_G0019486) #22	MGP_PahariEiJ_G0019485 #22	Bphl (MGP_PahariEiJ_G0019484) #23	Ripk1 (MGP_PahariEiJ_G0019483) #24	Nqo2 (MGP_PahariEiJ_G0019482) #26	Serpinb6a (MGP_PahariEiJ_G0019481) #27	Serpinb6c (MGP_PahariEiJ_G0019480) #27	Serpinb6e (MGP_PahariEiJ_G0019479) #27	Serpinb6d (MGP_PahariEiJ_G0019478) #27	MGP_PahariEiJ_G0019477	MGP_PahariEiJ_G0019476	MGP_PahariEiJ_G0019475	MGP_PahariEiJ_G0019474	Serpinb9c (MGP_PahariEiJ_G0019473)	Serpinb9 (MGP_PahariEiJ_G0019472)	Serpinb6b (MGP_PahariEiJ_G0019471) #27
Cricetidae	ANCESTRAL SPECIES	22	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q #13	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #27	ENSGT00940000154519.g.b.a.d #27	ENSGT00940000154519.g.b.a.c.b #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Cricetinae	ANCESTRAL SPECIES	20	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q #13	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #27	ENSGT00940000154931.d.i	ENSGT00940000154519.g.b.a.c.b #27	ENSGT00940000154931.d.j	ENSGT00940000154573 #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	623	Fars2 (ENSMAUG00000008493)	Lyrm4 (ENSMAUG00000009051)	Rpp40 (ENSMAUG00000010268)	Cdyl (ENSMAUG00000011510)	ENSMAUG00000020164 #13	ENSMAUG00000001515 #13	Tex56 (ENSMAUG00000002707) #15	Fam217a (ENSMAUG00000004346) #16	Prpf4b (ENSMAUG00000007805) #17	ENSMAUG00000015060	Fam50b (ENSMAUG00000001407) #18	Pxdc1 (ENSMAUG00000016900) #19	Slc22a23 (ENSMAUG00000017453) #20	Psmg4 (ENSMAUG00000017755) #21	ENSMAUG00000018054 #22	Tubb2a (ENSMAUG00000018540) #22	Bphl (ENSMAUG00000000408) #23	Ripk1 (ENSMAUG00000000557) #24	Nqo2 (ENSMAUG00000000875) #26	ENSMAUG00000001093 #27	ENSMAUG00000001439	ENSMAUG00000008075	ENSMAUG00000009098 #27	ENSMAUG00000009345	ENSMAUG00000009659 #28	Wrnip1 (ENSMAUG00000009914) #29	Mylk4 (ENSMAUG00000011053) #30	Gmds (ENSMAUG00000011976) #32	Foxc1 (ENSMAUG00000018460)	Foxf2 (ENSMAUG00000012470) #34	Foxq1 (ENSMAUG00000018519) #35
Golden Hamster	MODERN SPECIES	623	Nrn1 (ENSMAUG00000008121)	Fars2 (ENSMAUG00000008493)	Lyrm4 (ENSMAUG00000009051)	Rpp40 (ENSMAUG00000010268)	Cdyl (ENSMAUG00000011510)	ENSMAUG00000020164 #13	ENSMAUG00000001515 #13	Tex56 (ENSMAUG00000002707) #15	Fam217a (ENSMAUG00000004346) #16	Prpf4b (ENSMAUG00000007805) #17	ENSMAUG00000015060	Fam50b (ENSMAUG00000001407) #18	Pxdc1 (ENSMAUG00000016900) #19	Slc22a23 (ENSMAUG00000017453) #20	Psmg4 (ENSMAUG00000017755) #21	ENSMAUG00000018054 #22	Tubb2a (ENSMAUG00000018540) #22	Bphl (ENSMAUG00000000408) #23	Ripk1 (ENSMAUG00000000557) #24	Nqo2 (ENSMAUG00000000875) #26	ENSMAUG00000001093 #27	ENSMAUG00000001439	ENSMAUG00000008075	ENSMAUG00000009098 #27	ENSMAUG00000009345	ENSMAUG00000009659 #28	Wrnip1 (ENSMAUG00000009914) #29	Mylk4 (ENSMAUG00000011053) #30	Gmds (ENSMAUG00000011976) #32	Foxc1 (ENSMAUG00000018460)	Foxf2 (ENSMAUG00000012470) #34
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	317	Nrn1 (ENSCGRG00001017665)	ENSCGRG00001012890	Fars2 (ENSCGRG00001022626)	Lyrm4 (ENSCGRG00001020406)	Ppp1r3g (ENSCGRG00001001814)	Rpp40 (ENSCGRG00001018328)	ENSCGRG00001013878	Cdyl (ENSCGRG00001002703)	ENSCGRG00001021795 #13	Fam217a (ENSCGRG00001020164) #16	Prpf4b (ENSCGRG00001019388) #17	Fam50b (ENSCGRG00001009274) #18	Pxdc1 (ENSCGRG00001021838) #19	Slc22a23 (ENSCGRG00001010789) #20	Psmg4 (ENSCGRG00001017753) #21	Tubb2b (ENSCGRG00001008382) #22	Tubb2a (ENSCGRG00001020515) #22	Bphl (ENSCGRG00001014124) #23	Ripk1 (ENSCGRG00001014419) #24	Nqo2 (ENSCGRG00001004425) #26	ENSCGRG00001015437 #27	ENSCGRG00001020665 #27	ENSCGRG00001022043	ENSCGRG00001021359	ENSCGRG00001014514	ENSCGRG00001009851	ENSCGRG00001000139 #28	ENSCGRG00001007544	Wrnip1 (ENSCGRG00001020075) #29	Mylk4 (ENSCGRG00001012998) #30	ENSCGRG00001020761
Chinese hamster chok1gshd	MODERN SPECIES	317	ENSCGRG00001012890	Fars2 (ENSCGRG00001022626)	Lyrm4 (ENSCGRG00001020406)	Ppp1r3g (ENSCGRG00001001814)	Rpp40 (ENSCGRG00001018328)	ENSCGRG00001013878	Cdyl (ENSCGRG00001002703)	ENSCGRG00001021795 #13	Fam217a (ENSCGRG00001020164) #16	Prpf4b (ENSCGRG00001019388) #17	Fam50b (ENSCGRG00001009274) #18	Pxdc1 (ENSCGRG00001021838) #19	Slc22a23 (ENSCGRG00001010789) #20	Psmg4 (ENSCGRG00001017753) #21	Tubb2b (ENSCGRG00001008382) #22	Tubb2a (ENSCGRG00001020515) #22	Bphl (ENSCGRG00001014124) #23	Ripk1 (ENSCGRG00001014419) #24	Nqo2 (ENSCGRG00001004425) #26	ENSCGRG00001015437 #27	ENSCGRG00001020665 #27	ENSCGRG00001022043	ENSCGRG00001021359	ENSCGRG00001014514	ENSCGRG00001009851	ENSCGRG00001000139 #28	ENSCGRG00001007544	Wrnip1 (ENSCGRG00001020075) #29	Mylk4 (ENSCGRG00001012998) #30	ENSCGRG00001020761	Gmds (ENSCGRG00001014163) #32
Cricetidae_B	ANCESTRAL SPECIES	22	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105.q #13	ENSGT00940000155105.r #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.g.b.a.c.a #27	ENSGT00940000154519.g.b.a.d #27	ENSGT00940000154931.d	ENSGT00940000154573 #28	ENSGT01000000215059	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Northern American deer mouse	MODERN SPECIES	18	Fars2 (ENSPEMG00000017477)	Lyrm4 (ENSPEMG00000030913)	Ppp1r3g (ENSPEMG00000014441)	Rpp40 (ENSPEMG00000020809)	Cdyl (ENSPEMG00000022690)	ENSPEMG00000021110 #13	ENSPEMG00000021161 #13	Tex56 (ENSPEMG00000020583) #15	Fam217a (ENSPEMG00000020354) #16	Prpf4b (ENSPEMG00000020358) #17	ENSPEMG00000031049	Fam50b (ENSPEMG00000024324) #18	Pxdc1 (ENSPEMG00000021893) #19	Slc22a23 (ENSPEMG00000020810) #20	Psmg4 (ENSPEMG00000020434) #21	Tubb2b (ENSPEMG00000008538) #22	ENSPEMG00000028800	Bphl (ENSPEMG00000020657) #23	Ripk1 (ENSPEMG00000014892) #24	Nqo2 (ENSPEMG00000022103) #26	ENSPEMG00000030940 #27	ENSPEMG00000006842 #27	ENSPEMG00000011189	ENSPEMG00000029739 #27	ENSPEMG00000025946	ENSPEMG00000007216	ENSPEMG00000007226 #27	ENSPEMG00000024282	ENSPEMG00000003771 #28	ENSPEMG00000030799	Wrnip1 (ENSPEMG00000000543) #29
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	3	Nrn1 (ENSMOCG00000015236)	Fars2 (ENSMOCG00000021203)	Lyrm4 (ENSMOCG00000015484)	Ppp1r3g (ENSMOCG00000005122)	Rpp40 (ENSMOCG00000000305)	Cdyl (ENSMOCG00000012115)	ENSMOCG00000009658 #13	ENSMOCG00000006528 #13	Tex56 (ENSMOCG00000011556) #15	Fam217a (ENSMOCG00000021508) #16	Prpf4b (ENSMOCG00000022394) #17	Fam50b (ENSMOCG00000009994) #18	Pxdc1 (ENSMOCG00000020484) #19	Slc22a23 (ENSMOCG00000009539) #20	Psmg4 (ENSMOCG00000020506) #21	Tubb2b (ENSMOCG00000021829) #22	Tubb2a (ENSMOCG00000021775) #22	Bphl (ENSMOCG00000012434) #23	Ripk1 (ENSMOCG00000002677) #24	Nqo2 (ENSMOCG00000007454) #26	ENSMOCG00000000484 #27	ENSMOCG00000016676 #27	ENSMOCG00000019022	ENSMOCG00000011182 #27	ENSMOCG00000004352	ENSMOCG00000010614	ENSMOCG00000016281 #27	ENSMOCG00000000987	ENSMOCG00000021377 #28	Wrnip1 (ENSMOCG00000002819) #29	ENSMOCG00000019965
Prairie vole	MODERN SPECIES	3	Fars2 (ENSMOCG00000021203)	Lyrm4 (ENSMOCG00000015484)	Ppp1r3g (ENSMOCG00000005122)	Rpp40 (ENSMOCG00000000305)	Cdyl (ENSMOCG00000012115)	ENSMOCG00000009658 #13	ENSMOCG00000006528 #13	Tex56 (ENSMOCG00000011556) #15	Fam217a (ENSMOCG00000021508) #16	Prpf4b (ENSMOCG00000022394) #17	Fam50b (ENSMOCG00000009994) #18	Pxdc1 (ENSMOCG00000020484) #19	Slc22a23 (ENSMOCG00000009539) #20	Psmg4 (ENSMOCG00000020506) #21	Tubb2b (ENSMOCG00000021829) #22	Tubb2a (ENSMOCG00000021775) #22	Bphl (ENSMOCG00000012434) #23	Ripk1 (ENSMOCG00000002677) #24	Nqo2 (ENSMOCG00000007454) #26	ENSMOCG00000000484 #27	ENSMOCG00000016676 #27	ENSMOCG00000019022	ENSMOCG00000011182 #27	ENSMOCG00000004352	ENSMOCG00000010614	ENSMOCG00000016281 #27	ENSMOCG00000000987	ENSMOCG00000021377 #28	Wrnip1 (ENSMOCG00000002819) #29	ENSMOCG00000019965	Mylk4 (ENSMOCG00000014428) #30
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	220															ENSDORG00000024731 #22	ENSDORG00000029362 #22
Kangaroo rat	MODERN SPECIES	220																ENSDORG00000024731 #22	ENSDORG00000029362 #22
Kangaroo rat	MODERN SPECIES	221																ENSDORG00000027765 #22
Kangaroo rat	MODERN SPECIES	351	Nqo2 (ENSDORG00000010390) #26	Ripk1 (ENSDORG00000010392) #24	ENSDORG00000029944	ENSDORG00000011196	ENSDORG00000028660	Cdyl (ENSDORG00000002812)	ENSDORG00000023689	ENSDORG00000004072 #13	Tex56 (ENSDORG00000024679) #15	ENSDORG00000025392	ENSDORG00000025074 #16	Prpf4b (ENSDORG00000000464) #17	Pxdc1 (ENSDORG00000029672) #19	Slc22a23 (ENSDORG00000010217) #20	ENSDORG00000010216 #21	Tubb2b (ENSDORG00000029767) #22	ENSDORG00000025335	ENSDORG00000030064 #22	Bphl (ENSDORG00000012891) #23	Lyrm4 (ENSDORG00000029399)	Fars2 (ENSDORG00000014796)	Nrn1 (ENSDORG00000028098)	F13a1 (ENSDORG00000005435)	Ly86 (ENSDORG00000009360)	Rreb1 (ENSDORG00000006979)	Ssr1 (ENSDORG00000009319)	Cage1 (ENSDORG00000004490)	Riok1 (ENSDORG00000008530)	Dsp (ENSDORG00000000359)	Snrnp48 (ENSDORG00000015140)	Bmp6 (ENSDORG00000004681)
Kangaroo rat	MODERN SPECIES	351	ENSDORG00000029944	ENSDORG00000011196	ENSDORG00000028660	Cdyl (ENSDORG00000002812)	ENSDORG00000023689	ENSDORG00000004072 #13	Tex56 (ENSDORG00000024679) #15	ENSDORG00000025392	ENSDORG00000025074 #16	Prpf4b (ENSDORG00000000464) #17	Pxdc1 (ENSDORG00000029672) #19	Slc22a23 (ENSDORG00000010217) #20	ENSDORG00000010216 #21	Tubb2b (ENSDORG00000029767) #22	ENSDORG00000025335	ENSDORG00000030064 #22	Bphl (ENSDORG00000012891) #23	Lyrm4 (ENSDORG00000029399)	Fars2 (ENSDORG00000014796)	Nrn1 (ENSDORG00000028098)	F13a1 (ENSDORG00000005435)	Ly86 (ENSDORG00000009360)	Rreb1 (ENSDORG00000006979)	Ssr1 (ENSDORG00000009319)	Cage1 (ENSDORG00000004490)	Riok1 (ENSDORG00000008530)	Dsp (ENSDORG00000000359)	Snrnp48 (ENSDORG00000015140)	Bmp6 (ENSDORG00000004681)	Txndc5 (ENSDORG00000004682)	ENSDORG00000027767
Lagomorpha	ANCESTRAL SPECIES	58	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.h ##27	ENSGT00940000154519.g.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32
Rabbit	MODERN SPECIES	448	NRN1 (ENSOCUG00000008677)	FARS2 (ENSOCUG00000014165)	LYRM4 (ENSOCUG00000023362)	CDYL (ENSOCUG00000004407)	RPP40 (ENSOCUG00000000354)	ENSOCUG00000030173	ENSOCUG00000032771	ENSOCUG00000016155 #13	ENSOCUG00000016148 #15	FAM217A (ENSOCUG00000016142) #16	PRPF4B (ENSOCUG00000000425) #17	FAM50B (ENSOCUG00000003308) #18	PXDC1 (ENSOCUG00000021247) #19	SLC22A23 (ENSOCUG00000010469) #20	ENSOCUG00000010464 #21	TUBB2B (ENSOCUG00000009827) #22	BPHL (ENSOCUG00000009825) #23	RIPK1 (ENSOCUG00000011791) #24	NQO2 (ENSOCUG00000016499) #26	ENSOCUG00000006216 ##27	SERPINB9 (ENSOCUG00000005091)	ENSOCUG00000005088 #28	WRNIP1 (ENSOCUG00000005081) #29	ENSOCUG00000005076 #30	GMDS (ENSOCUG00000015142) #32
Pika	DUPLICATION
Pika	MODERN SPECIES	1475																TUBB2B (ENSOPRG00000000403) #22	TUBB2A (ENSOPRG00000000400) #22	ENSOPRG00000000393 #23
Pika	MODERN SPECIES	1475															TUBB2B (ENSOPRG00000000403) #22	TUBB2A (ENSOPRG00000000400) #22	ENSOPRG00000000393 #23
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	1075																ENSTBEG00000004854 #22	ENSTBEG00000004015 #22	ENSTBEG00000003715
Tree shrew	MODERN SPECIES	1075															ENSTBEG00000004854 #22	ENSTBEG00000004015 #22	ENSTBEG00000003715
Laurasiatheria	DUPLICATION
Laurasiatheria	DUPLICATION
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Hedgehog	MODERN SPECIES	3460																ENSEEUG00000002989 #22	ENSEEUG00000002955 #22	BPHL (ENSEEUG00000002899) #23
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Ursus	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.a #22
Polar bear	MODERN SPECIES	181	FARS2 (ENSUMAG00000018618)	LYRM4 (ENSUMAG00000018628)	RPP40 (ENSUMAG00000018639)	CDYL (ENSUMAG00000018648)	ENSUMAG00000018660	ECI2 (ENSUMAG00000018673) #13	ENSUMAG00000018677 #15	FAM217A (ENSUMAG00000018684) #16	PRPF4B (ENSUMAG00000018696) #17	FAM50B (ENSUMAG00000018705) #18	PXDC1 (ENSUMAG00000018711) #19	SLC22A23 (ENSUMAG00000018716) #20	PSMG4 (ENSUMAG00000018729) #21	ENSUMAG00000018733 #22	ENSUMAG00000018735 #22	ENSUMAG00000018737 #22	BPHL (ENSUMAG00000018741) #23	RIPK1 (ENSUMAG00000018746) #24	NQO2 (ENSUMAG00000018754) #26	ENSUMAG00000018764 #27	SERPINB9 (ENSUMAG00000018772)	SERPINB1 (ENSUMAG00000018779) #28	WRNIP1 (ENSUMAG00000018782) #29	MYLK4 (ENSUMAG00000018791) #30	GMDS (ENSUMAG00000018823) #32	ENSUMAG00000018836	ENSUMAG00000018847	EXOC2 (ENSUMAG00000018869) #37	ENSUMAG00000018902	IRF4 (ENSUMAG00000018906)	DUSP22 (ENSUMAG00000018924)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150.xb #22	ENSGT00940000175246	ENSGT00940000154150.wb.b #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685
Eulipotyphla	ANCESTRAL SPECIES	2278																ENSGT00940000154150.wb.b #22	ENSGT00390000004746 #23
Hedgehog	MODERN SPECIES	3460															ENSEEUG00000002989 #22	ENSEEUG00000002955 #22	BPHL (ENSEEUG00000002899) #23
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00940000175246	ENSGT00940000154150.wb.b #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.b #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.b #22
Felidae	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00940000154150.wb.b #22
Tiger	MODERN SPECIES	15	CAGE1 (ENSPTIG00000019168)	SSR1 (ENSPTIG00000006156)	LY86 (ENSPTIG00000014095)	F13A1 (ENSPTIG00000014413)	NRN1 (ENSPTIG00000015277)	FARS2 (ENSPTIG00000016684)	LYRM4 (ENSPTIG00000018145)	RPP40 (ENSPTIG00000018847)	CDYL (ENSPTIG00000004597)	ECI2 (ENSPTIG00000007246) #13	ENSPTIG00000011297 #15	FAM217A (ENSPTIG00000011724) #16	PRPF4B (ENSPTIG00000013243) #17	PXDC1 (ENSPTIG00000015113) #19	SLC22A23 (ENSPTIG00000015797) #20	TUBB2A (ENSPTIG00000019182) #22	BPHL (ENSPTIG00000019655) #23	RIPK1 (ENSPTIG00000000019) #24	ENSPTIG00000005890	NQO2 (ENSPTIG00000006542) #26	ENSPTIG00000008964 #27	SERPINB9 (ENSPTIG00000011314)	SERPINB1 (ENSPTIG00000012609) #28	WRNIP1 (ENSPTIG00000012879) #29	MYLK4 (ENSPTIG00000014895) #30	GMDS (ENSPTIG00000016896) #32	EXOC2 (ENSPTIG00000017629) #37	IRF4 (ENSPTIG00000019685)	DUSP22 (ENSPTIG00000020047)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417	ENSGT00940000154150.xb #22	ENSGT00940000175246	ENSGT00940000154150.wb.b #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154150.xb #22
Common shrew	MODERN SPECIES	8252																ENSSARG00000003430 #22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00940000175246	ENSGT00940000154150.wb.b #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.bb.a.b	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Equus	ANCESTRAL SPECIES	47	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT01000000214902	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Donkey	DUPLICATION
Donkey	MODERN SPECIES	27	NRN1 (ENSEASG00005031623)	FARS2 (ENSEASG00005012111)	ENSEASG00005012113	PPP1R3G (ENSEASG00005030057)	RPP40 (ENSEASG00005012116)	CDYL (ENSEASG00005012117)	ENSEASG00005032457	ECI2 (ENSEASG00005012124) #13	ENSEASG00005012126 #15	FAM217A (ENSEASG00005012129) #16	PRPF4B (ENSEASG00005012132) #17	FAM50B (ENSEASG00005012136) #18	ENSEASG00005012139 #19	SLC22A23 (ENSEASG00005012146) #20	PSMG4 (ENSEASG00005012153) #21	TUBB2B (ENSEASG00005032707) #22	ENSEASG00005012165	TUBB2A (ENSEASG00005030900) #22	BPHL (ENSEASG00005012172) #23	RIPK1 (ENSEASG00005012175) #24	NQO2 (ENSEASG00005012177) #26	ENSEASG00005012179 #27	SERPINB9 (ENSEASG00005012183)	SERPINB1 (ENSEASG00005012189) #28	WRNIP1 (ENSEASG00005012190) #29	MYLK4 (ENSEASG00005012193) #30	GMDS (ENSEASG00005012197) #32	ENSEASG00005031584	FOXF2 (ENSEASG00005012206) #34	EXOC2 (ENSEASG00005012215) #37	IRF4 (ENSEASG00005012225)
Donkey	MODERN SPECIES	27	ENSEASG00005012113	PPP1R3G (ENSEASG00005030057)	RPP40 (ENSEASG00005012116)	CDYL (ENSEASG00005012117)	ENSEASG00005032457	ECI2 (ENSEASG00005012124) #13	ENSEASG00005012126 #15	FAM217A (ENSEASG00005012129) #16	PRPF4B (ENSEASG00005012132) #17	FAM50B (ENSEASG00005012136) #18	ENSEASG00005012139 #19	SLC22A23 (ENSEASG00005012146) #20	PSMG4 (ENSEASG00005012153) #21	TUBB2B (ENSEASG00005032707) #22	ENSEASG00005012165	TUBB2A (ENSEASG00005030900) #22	BPHL (ENSEASG00005012172) #23	RIPK1 (ENSEASG00005012175) #24	NQO2 (ENSEASG00005012177) #26	ENSEASG00005012179 #27	SERPINB9 (ENSEASG00005012183)	SERPINB1 (ENSEASG00005012189) #28	WRNIP1 (ENSEASG00005012190) #29	MYLK4 (ENSEASG00005012193) #30	GMDS (ENSEASG00005012197) #32	ENSEASG00005031584	FOXF2 (ENSEASG00005012206) #34	EXOC2 (ENSEASG00005012215) #37	IRF4 (ENSEASG00005012225)	ENSEASG00005012235	ENSEASG00005027632
Horse	DUPLICATION
Horse	MODERN SPECIES	12	NRN1 (ENSECAG00000007120)	FARS2 (ENSECAG00000000279)	ENSECAG00000050087	RPP40 (ENSECAG00000017247)	CDYL (ENSECAG00000014044)	ENSECAG00000046549	ECI2 (ENSECAG00000000313) #13	ENSECAG00000000206 #15	FAM217A (ENSECAG00000000041) #16	PRPF4B (ENSECAG00000014830) #17	ENSECAG00000033231	FAM50B (ENSECAG00000014818) #18	PXDC1 (ENSECAG00000014479) #19	SLC22A23 (ENSECAG00000013821) #20	ENSECAG00000013813 #21	TUBB2B (ENSECAG00000058458) #22	TUBB (ENSECAG00000020234) #22	BPHL (ENSECAG00000013049) #23	RIPK1 (ENSECAG00000010293) #24	NQO2 (ENSECAG00000008386) #26	SERPINB6 (ENSECAG00000015966) #27	SERPINB9 (ENSECAG00000012506)	SERPINB1 (ENSECAG00000009896) #28	WRNIP1 (ENSECAG00000008348) #29	MYLK4 (ENSECAG00000006224) #30	ENSECAG00000060133	GMDS (ENSECAG00000001999) #32	FOXC1 (ENSECAG00000029381)	FOXQ1 (ENSECAG00000034522) #35	ENSECAG00000046100	EXOC2 (ENSECAG00000000078) #37
Horse	MODERN SPECIES	12	FARS2 (ENSECAG00000000279)	ENSECAG00000050087	RPP40 (ENSECAG00000017247)	CDYL (ENSECAG00000014044)	ENSECAG00000046549	ECI2 (ENSECAG00000000313) #13	ENSECAG00000000206 #15	FAM217A (ENSECAG00000000041) #16	PRPF4B (ENSECAG00000014830) #17	ENSECAG00000033231	FAM50B (ENSECAG00000014818) #18	PXDC1 (ENSECAG00000014479) #19	SLC22A23 (ENSECAG00000013821) #20	ENSECAG00000013813 #21	TUBB2B (ENSECAG00000058458) #22	TUBB (ENSECAG00000020234) #22	BPHL (ENSECAG00000013049) #23	RIPK1 (ENSECAG00000010293) #24	NQO2 (ENSECAG00000008386) #26	SERPINB6 (ENSECAG00000015966) #27	SERPINB9 (ENSECAG00000012506)	SERPINB1 (ENSECAG00000009896) #28	WRNIP1 (ENSECAG00000008348) #29	MYLK4 (ENSECAG00000006224) #30	ENSECAG00000060133	GMDS (ENSECAG00000001999) #32	FOXC1 (ENSECAG00000029381)	FOXQ1 (ENSECAG00000034522) #35	ENSECAG00000046100	EXOC2 (ENSECAG00000000078) #37	IRF4 (ENSECAG00000016808)
Chiroptera	ANCESTRAL SPECIES	50	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154931	ENSGT00940000154519 #27	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Megabat	DUPLICATION
Megabat	MODERN SPECIES	783															PSMG4 (ENSPVAG00000013677) #21	TUBB2B (ENSPVAG00000013676) #22
Megabat	MODERN SPECIES	782																TUBB2A (ENSPVAG00000003354) #22	BPHL (ENSPVAG00000003353) #23	RIPK1 (ENSPVAG00000003352) #24
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154573 #28	ENSGT00940000154931	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Greater horseshoe bat	MODERN SPECIES	27	FARS2 (ENSRFEG00010000859)	LYRM4 (ENSRFEG00010000898)	ENSRFEG00010000919	PPP1R3G (ENSRFEG00010000932)	RPP40 (ENSRFEG00010000963)	CDYL (ENSRFEG00010001012)	ECI2 (ENSRFEG00010001054) #13	ENSRFEG00010001108 #15	FAM217A (ENSRFEG00010001133) #16	PRPF4B (ENSRFEG00010001165) #17	ENSRFEG00010001206	FAM50B (ENSRFEG00010001229) #18	PXDC1 (ENSRFEG00010001243) #19	SLC22A23 (ENSRFEG00010001273) #20	PSMG4 (ENSRFEG00010001338) #21	TUBB2B (ENSRFEG00010001382) #22	BPHL (ENSRFEG00010001423) #23	RIPK1 (ENSRFEG00010001467) #24	ENSRFEG00010001506	NQO2 (ENSRFEG00010001518) #26	ENSRFEG00010001556	ENSRFEG00010001648	ENSRFEG00010001710 #27	SERPINB1 (ENSRFEG00010001747) #28	ENSRFEG00010001768	WRNIP1 (ENSRFEG00010001786) #29	MYLK4 (ENSRFEG00010001828) #30	GMDS (ENSRFEG00010001869) #32	NACA2 (ENSRFEG00010001919)	ENSRFEG00010001928	ENSRFEG00010001950
Microbat	DUPLICATION
Microbat	MODERN SPECIES	958										ENSMLUG00000025590	PXDC1 (ENSMLUG00000011359) #19	ENSMLUG00000028399	ENSMLUG00000006824 #20	PSMG4 (ENSMLUG00000024906) #21	TUBB2B (ENSMLUG00000006805) #22	ENSMLUG00000016179 #22	BPHL (ENSMLUG00000016171) #23	RIPK1 (ENSMLUG00000016163) #24	NQO2 (ENSMLUG00000000386) #26	ENSMLUG00000008803 #27	ENSMLUG00000016863 #28	ENSMLUG00000016842 #28	ENSMLUG00000016858 #28	ENSMLUG00000016847 #28	ENSMLUG00000016839 #28	WRNIP1 (ENSMLUG00000011209) #29	MYLK4 (ENSMLUG00000011182) #30	ENSMLUG00000003910	GMDS (ENSMLUG00000003934) #32	ENSMLUG00000023644	FOXF2 (ENSMLUG00000030088) #34
Microbat	MODERN SPECIES	958											ENSMLUG00000025590	PXDC1 (ENSMLUG00000011359) #19	ENSMLUG00000028399	ENSMLUG00000006824 #20	PSMG4 (ENSMLUG00000024906) #21	TUBB2B (ENSMLUG00000006805) #22	ENSMLUG00000016179 #22	BPHL (ENSMLUG00000016171) #23	RIPK1 (ENSMLUG00000016163) #24	NQO2 (ENSMLUG00000000386) #26	ENSMLUG00000008803 #27	ENSMLUG00000016863 #28	ENSMLUG00000016842 #28	ENSMLUG00000016858 #28	ENSMLUG00000016847 #28	ENSMLUG00000016839 #28	WRNIP1 (ENSMLUG00000011209) #29	MYLK4 (ENSMLUG00000011182) #30	ENSMLUG00000003910	GMDS (ENSMLUG00000003934) #32	ENSMLUG00000023644
Carnivora	ANCESTRAL SPECIES	4	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.bb.a.b	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.bb.a.b	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685
Caniformia_b	ANCESTRAL SPECIES	31	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.bb.a.b	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685
Ursidae	ANCESTRAL SPECIES	39	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b.x	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685	ENSGT00390000010872 #37
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	336																ENSAMEG00000031238 #22
Giant Panda	MODERN SPECIES	15	NRN1 (ENSAMEG00000024302)	FARS2 (ENSAMEG00000027009)	LYRM4 (ENSAMEG00000017445)	PPP1R3G (ENSAMEG00000025070)	RPP40 (ENSAMEG00000012938)	CDYL (ENSAMEG00000012914)	ENSAMEG00000012910	ECI2 (ENSAMEG00000012888) #13	ENSAMEG00000012884 #15	FAM217A (ENSAMEG00000012875) #16	PRPF4B (ENSAMEG00000012832) #17	FAM50B (ENSAMEG00000019077) #18	PXDC1 (ENSAMEG00000014456) #19	ENSAMEG00000014434 #20	ENSAMEG00000014430 #21	ENSAMEG00000030040 #22	ENSAMEG00000023499	ENSAMEG00000014416	BPHL (ENSAMEG00000014392) #23	RIPK1 (ENSAMEG00000014389) #24	NQO2 (ENSAMEG00000014373) #26	ENSAMEG00000003548 #27	SERPINB9 (ENSAMEG00000003574)	SERPINB1 (ENSAMEG00000003580) #28	WRNIP1 (ENSAMEG00000027067) #29	ENSAMEG00000025653	MYLK4 (ENSAMEG00000010940) #30	GMDS (ENSAMEG00000010935) #32	ENSAMEG00000010931	ENSAMEG00000025085	ENSAMEG00000025252 #25
Ursus	ANCESTRAL SPECIES	34	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b.x	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00390000008828	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00860000135685	ENSGT00390000010872 #37	ENSGT00940000159059
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	181	F13A1 (ENSUMAG00000018590)	NRN1 (ENSUMAG00000018605)	FARS2 (ENSUMAG00000018618)	LYRM4 (ENSUMAG00000018628)	RPP40 (ENSUMAG00000018639)	CDYL (ENSUMAG00000018648)	ENSUMAG00000018660	ECI2 (ENSUMAG00000018673) #13	ENSUMAG00000018677 #15	FAM217A (ENSUMAG00000018684) #16	PRPF4B (ENSUMAG00000018696) #17	FAM50B (ENSUMAG00000018705) #18	PXDC1 (ENSUMAG00000018711) #19	SLC22A23 (ENSUMAG00000018716) #20	PSMG4 (ENSUMAG00000018729) #21	ENSUMAG00000018733 #22	ENSUMAG00000018735 #22	ENSUMAG00000018737 #22	BPHL (ENSUMAG00000018741) #23	RIPK1 (ENSUMAG00000018746) #24	NQO2 (ENSUMAG00000018754) #26	ENSUMAG00000018764 #27	SERPINB9 (ENSUMAG00000018772)	SERPINB1 (ENSUMAG00000018779) #28	WRNIP1 (ENSUMAG00000018782) #29	MYLK4 (ENSUMAG00000018791) #30	GMDS (ENSUMAG00000018823) #32	ENSUMAG00000018836	ENSUMAG00000018847	EXOC2 (ENSUMAG00000018869) #37	ENSUMAG00000018902
Polar bear	MODERN SPECIES	181	NRN1 (ENSUMAG00000018605)	FARS2 (ENSUMAG00000018618)	LYRM4 (ENSUMAG00000018628)	RPP40 (ENSUMAG00000018639)	CDYL (ENSUMAG00000018648)	ENSUMAG00000018660	ECI2 (ENSUMAG00000018673) #13	ENSUMAG00000018677 #15	FAM217A (ENSUMAG00000018684) #16	PRPF4B (ENSUMAG00000018696) #17	FAM50B (ENSUMAG00000018705) #18	PXDC1 (ENSUMAG00000018711) #19	SLC22A23 (ENSUMAG00000018716) #20	PSMG4 (ENSUMAG00000018729) #21	ENSUMAG00000018733 #22	ENSUMAG00000018735 #22	ENSUMAG00000018737 #22	BPHL (ENSUMAG00000018741) #23	RIPK1 (ENSUMAG00000018746) #24	NQO2 (ENSUMAG00000018754) #26	ENSUMAG00000018764 #27	SERPINB9 (ENSUMAG00000018772)	SERPINB1 (ENSUMAG00000018779) #28	WRNIP1 (ENSUMAG00000018782) #29	MYLK4 (ENSUMAG00000018791) #30	GMDS (ENSUMAG00000018823) #32	ENSUMAG00000018836	ENSUMAG00000018847	EXOC2 (ENSUMAG00000018869) #37	ENSUMAG00000018902	IRF4 (ENSUMAG00000018906)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1147														SLC22A23 (ENSUAMG00000012637) #20	PSMG4 (ENSUAMG00000012633) #21	TUBB2B (ENSUAMG00000012630) #22	ENSUAMG00000012628
American black bear	MODERN SPECIES	6712																ENSUAMG00000015412 #22	BPHL (ENSUAMG00000015404) #23	RIPK1 (ENSUAMG00000015400) #24
Mustelinae	ANCESTRAL SPECIES	42	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00390000012138.a.b.t.bb.a.b	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Ferret	MODERN SPECIES	202	F13A1 (ENSMPUG00000000546)	ENSMPUG00000000541	ENSMPUG00000000540	ENSMPUG00000000537	FARS2 (ENSMPUG00000000534)	LYRM4 (ENSMPUG00000000532)	RPP40 (ENSMPUG00000000530)	CDYL (ENSMPUG00000000521)	ECI2 (ENSMPUG00000000515) #13	ENSMPUG00000000507 #15	FAM217A (ENSMPUG00000000502) #16	PRPF4B (ENSMPUG00000000500) #17	FAM50B (ENSMPUG00000000493) #18	PXDC1 (ENSMPUG00000000491) #19	SLC22A23 (ENSMPUG00000000466) #20	TUBB2B (ENSMPUG00000000462) #22	BPHL (ENSMPUG00000000459) #23	RIPK1 (ENSMPUG00000000454) #24	NQO2 (ENSMPUG00000000451) #26	ENSMPUG00000000448 #27	ENSMPUG00000000447	SERPINB9 (ENSMPUG00000000446)	SERPINB1 (ENSMPUG00000000421) #28	WRNIP1 (ENSMPUG00000000417) #29	MYLK4 (ENSMPUG00000000408) #30	ENSMPUG00000018450	GMDS (ENSMPUG00000000399) #32	FOXC1 (ENSMPUG00000018449)	FOXF2 (ENSMPUG00000000392) #34	FOXQ1 (ENSMPUG00000018966) #35	ENSMPUG00000000390
American mink	MODERN SPECIES	158											FAM50B (ENSNVIG00000011720) #18	ENSNVIG00000011710	PXDC1 (ENSNVIG00000011694) #19	SLC22A23 (ENSNVIG00000011656) #20	PSMG4 (ENSNVIG00000011643) #21	TUBB2B (ENSNVIG00000011631) #22	BPHL (ENSNVIG00000011595) #23	RIPK1 (ENSNVIG00000011579) #24	NQO2 (ENSNVIG00000011533) #26	ENSNVIG00000011489 #27	SERPINB9 (ENSNVIG00000011466)	ILEU (ENSNVIG00000011445) #28	WRNIP1 (ENSNVIG00000011416) #29	MYLK4 (ENSNVIG00000011396) #30	GMDS (ENSNVIG00000011372) #32	FOXC1 (ENSNVIG00000011358)	FOXF2 (ENSNVIG00000011356) #34	ENSNVIG00000011350 #35	ENSNVIG00000011347	EXOC2 (ENSNVIG00000011250) #37	ENSNVIG00000011228
Canidae	ANCESTRAL SPECIES	48	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153	ENSGT00390000014654	ENSGT00940000163032
Red fox	MODERN SPECIES	173								CDYL (ENSVVUG00000018989)	ECI2 (ENSVVUG00000019007) #13	ENSVVUG00000019015 #15	FAM217A (ENSVVUG00000019019) #16	PRPF4B (ENSVVUG00000019025) #17	ENSVVUG00000019034	PXDC1 (ENSVVUG00000019041) #19	SLC22A23 (ENSVVUG00000019044) #20	TUBB2B (ENSVVUG00000019054) #22	ENSVVUG00000019059 #23	ENSVVUG00000019060 #23	ENSVVUG00000019068	RIPK1 (ENSVVUG00000019070) #24	NQO2 (ENSVVUG00000019083) #26	ENSVVUG00000019088 #27	SERPINB9 (ENSVVUG00000019101)	SERPINB1 (ENSVVUG00000019110) #28	WRNIP1 (ENSVVUG00000019115) #29	MYLK4 (ENSVVUG00000019119) #30	RPLP2 (ENSVVUG00000019125)	GMDS (ENSVVUG00000019130) #32	ENSVVUG00000019136	ENSVVUG00000019144	ENSVVUG00000019147
Canis_lupus	ANCESTRAL SPECIES	36	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00980000203340	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000003582.q.a.b.a.b.a.b	ENSGT01020000230346.C.e.c.b	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00970000193590.b.c.b	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Dingo	MODERN SPECIES	411	LYRM4 (ENSCAFG00020013362)	ENSCAFG00020013366	RPP40 (ENSCAFG00020013380)	CDYL (ENSCAFG00020013382)	ENSCAFG00020013385	ECI2 (ENSCAFG00020013391) #13	ENSCAFG00020013395 #15	FAM217A (ENSCAFG00020013397) #16	PRPF4B (ENSCAFG00020013403) #17	ENSCAFG00020000097	ENSCAFG00020000116	ENSCAFG00020000131	ENSCAFG00020000138 #19	SLC22A23 (ENSCAFG00020000148) #20	ENSCAFG00020000376 #21	TUBB2B (ENSCAFG00020000389) #22	BPHL (ENSCAFG00020000419) #23	RIPK1 (ENSCAFG00020000428) #24	ENSCAFG00020000437	NQO2 (ENSCAFG00020000450) #26	ENSCAFG00020000462 #27	SERPINB9 (ENSCAFG00020000463)	SERPINB1 (ENSCAFG00020000473) #28	WRNIP1 (ENSCAFG00020000482) #29	MYLK4 (ENSCAFG00020000493) #30	GMDS (ENSCAFG00020000552) #32	ENSCAFG00020000565	ENSCAFG00020000579	ENSCAFG00020000590	FOXF2 (ENSCAFG00020000598) #34	ENSCAFG00020000606
Dog	MODERN SPECIES	28	FARS2 (ENSCAFG00845019317)	LYRM4 (ENSCAFG00845019185)	ENSCAFG00845019068	RPP40 (ENSCAFG00845018947)	CDYL (ENSCAFG00845018889)	ENSCAFG00845018833	ECI2 (ENSCAFG00845018709) #13	ENSCAFG00845018634 #15	ENSCAFG00845018572 #16	PRPF4B (ENSCAFG00845018389) #17	ENSCAFG00845018330	ENSCAFG00845018280	ENSCAFG00845018193 #19	SLC22A23 (ENSCAFG00845017898) #20	PSMG4 (ENSCAFG00845017809) #21	TUBB2B (ENSCAFG00845017639) #22	BPHL (ENSCAFG00845017516) #23	ENSCAFG00845017474	RIPK1 (ENSCAFG00845017400) #24	NQO2 (ENSCAFG00845017337) #26	ENSCAFG00845017319	SERPINB6 (ENSCAFG00845017287) #27	SERPINB9 (ENSCAFG00845017203)	SERPINB1 (ENSCAFG00845017116) #28	WRNIP1 (ENSCAFG00845016996) #29	MYLK4 (ENSCAFG00845016887) #30	ENSCAFG00845016489 #32	ENSCAFG00845016313	ENSCAFG00845016281	ENSCAFG00845016251	FOXF2 (ENSCAFG00845016185) #34
Felidae	ANCESTRAL SPECIES	5	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000009819.a.b.a.a.b.b.b	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00550000074840.z	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Cat	MODERN SPECIES	236	NRN1 (ENSFCAG00000030503)	FARS2 (ENSFCAG00000014441)	ENSFCAG00000051390	LYRM4 (ENSFCAG00000038299)	PPP1R3G (ENSFCAG00000041787)	RPP40 (ENSFCAG00000009249)	CDYL (ENSFCAG00000028494)	ECI2 (ENSFCAG00000012171) #13	ENSFCAG00000045175 #15	FAM217A (ENSFCAG00000012169) #16	PRPF4B (ENSFCAG00000030050) #17	FAM50B (ENSFCAG00000028350) #18	PXDC1 (ENSFCAG00000039703) #19	SLC22A23 (ENSFCAG00000025838) #20	PSMG4 (ENSFCAG00000046735) #21	TUBB2B (ENSFCAG00000014626) #22	BPHL (ENSFCAG00000046730) #23	RIPK1 (ENSFCAG00000014625) #24	ENSFCAG00000026193	NQO2 (ENSFCAG00000024592) #26	SERPINB6 (ENSFCAG00000000810) #27	SERPINB9 (ENSFCAG00000000807)	SERPINB1 (ENSFCAG00000008689) #28	WRNIP1 (ENSFCAG00000042833) #29	ENSFCAG00000053862	ENSFCAG00000034906	MYLK4 (ENSFCAG00000034770) #30	GMDS (ENSFCAG00000004783) #32	FOXC1 (ENSFCAG00000043380)	FOXF2 (ENSFCAG00000005901) #34	FOXQ1 (ENSFCAG00000036417) #35
Panthera	ANCESTRAL SPECIES	30	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000009819.a.b.a.b	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00550000074840.z	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Panthera_a	ANCESTRAL SPECIES	32	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a	ENSGT00940000154150.xb #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00390000009819.a.b.a.b	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT01000000215059	ENSGT00550000074840.z	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
lion	DUPLICATION
lion	MODERN SPECIES	28	F13A1 (ENSPLOG00000019314)	NRN1 (ENSPLOG00000019270)	FARS2 (ENSPLOG00000019222)	LYRM4 (ENSPLOG00000019169)	ENSPLOG00000019120	RPP40 (ENSPLOG00000019021)	CDYL (ENSPLOG00000018938)	ECI2 (ENSPLOG00000018858) #13	ENSPLOG00000018809 #15	FAM217A (ENSPLOG00000018759) #16	PRPF4B (ENSPLOG00000018709) #17	FAM50B (ENSPLOG00000018680) #18	PXDC1 (ENSPLOG00000018629) #19	SLC22A23 (ENSPLOG00000018579) #20	ENSPLOG00000018533	TUBB2B (ENSPLOG00000018497) #22	ENSPLOG00000018446 #22	BPHL (ENSPLOG00000018383) #23	RIPK1 (ENSPLOG00000018363) #24	ENSPLOG00000018333	NQO2 (ENSPLOG00000018239) #26	SERPINB9 (ENSPLOG00000018094)	SERPINB1 (ENSPLOG00000018010) #28	WRNIP1 (ENSPLOG00000017949) #29	ENSPLOG00000017919	ENSPLOG00000017887	MYLK4 (ENSPLOG00000017722) #30	GMDS (ENSPLOG00000017599) #32	ENSPLOG00000017561	FOXF2 (ENSPLOG00000017522) #34	FOXQ1 (ENSPLOG00000017508) #35
lion	MODERN SPECIES	28	NRN1 (ENSPLOG00000019270)	FARS2 (ENSPLOG00000019222)	LYRM4 (ENSPLOG00000019169)	ENSPLOG00000019120	RPP40 (ENSPLOG00000019021)	CDYL (ENSPLOG00000018938)	ECI2 (ENSPLOG00000018858) #13	ENSPLOG00000018809 #15	FAM217A (ENSPLOG00000018759) #16	PRPF4B (ENSPLOG00000018709) #17	FAM50B (ENSPLOG00000018680) #18	PXDC1 (ENSPLOG00000018629) #19	SLC22A23 (ENSPLOG00000018579) #20	ENSPLOG00000018533	TUBB2B (ENSPLOG00000018497) #22	ENSPLOG00000018446 #22	BPHL (ENSPLOG00000018383) #23	RIPK1 (ENSPLOG00000018363) #24	ENSPLOG00000018333	NQO2 (ENSPLOG00000018239) #26	SERPINB9 (ENSPLOG00000018094)	SERPINB1 (ENSPLOG00000018010) #28	WRNIP1 (ENSPLOG00000017949) #29	ENSPLOG00000017919	ENSPLOG00000017887	MYLK4 (ENSPLOG00000017722) #30	GMDS (ENSPLOG00000017599) #32	ENSPLOG00000017561	FOXF2 (ENSPLOG00000017522) #34	FOXQ1 (ENSPLOG00000017508) #35	ENSPLOG00000017393
leopard	DUPLICATION
leopard	MODERN SPECIES	79	ENSPPRG00000006505	FARS2 (ENSPPRG00000006027)	LYRM4 (ENSPPRG00000005664)	PPP1R3G (ENSPPRG00000015138)	RPP40 (ENSPPRG00000005612)	CDYL (ENSPPRG00000004629)	ENSPPRG00000003975	ECI2 (ENSPPRG00000003341) #13	ENSPPRG00000002615 #15	FAM217A (ENSPPRG00000002142) #16	PRPF4B (ENSPPRG00000001709) #17	PXDC1 (ENSPPRG00000001339) #19	SLC22A23 (ENSPPRG00000000705) #20	PSMG4 (ENSPPRG00000022994) #21	ENSPPRG00000023661	TUBB2B (ENSPPRG00000023755) #22	TUBB2A (ENSPPRG00000023932) #22	BPHL (ENSPPRG00000023975) #23	RIPK1 (ENSPPRG00000024036) #24	ENSPPRG00000024159	NQO2 (ENSPPRG00000024196) #26	ENSPPRG00000024624 #27	SERPINB9 (ENSPPRG00000020115)	SERPINB1 (ENSPPRG00000019499) #28	WRNIP1 (ENSPPRG00000018070) #29	ENSPPRG00000015212	MYLK4 (ENSPPRG00000014341) #30	GMDS (ENSPPRG00000011992) #32	FOXC1 (ENSPPRG00000014362)	FOXF2 (ENSPPRG00000011053) #34	FOXQ1 (ENSPPRG00000014349) #35
leopard	MODERN SPECIES	79	FARS2 (ENSPPRG00000006027)	LYRM4 (ENSPPRG00000005664)	PPP1R3G (ENSPPRG00000015138)	RPP40 (ENSPPRG00000005612)	CDYL (ENSPPRG00000004629)	ENSPPRG00000003975	ECI2 (ENSPPRG00000003341) #13	ENSPPRG00000002615 #15	FAM217A (ENSPPRG00000002142) #16	PRPF4B (ENSPPRG00000001709) #17	PXDC1 (ENSPPRG00000001339) #19	SLC22A23 (ENSPPRG00000000705) #20	PSMG4 (ENSPPRG00000022994) #21	ENSPPRG00000023661	TUBB2B (ENSPPRG00000023755) #22	TUBB2A (ENSPPRG00000023932) #22	BPHL (ENSPPRG00000023975) #23	RIPK1 (ENSPPRG00000024036) #24	ENSPPRG00000024159	NQO2 (ENSPPRG00000024196) #26	ENSPPRG00000024624 #27	SERPINB9 (ENSPPRG00000020115)	SERPINB1 (ENSPPRG00000019499) #28	WRNIP1 (ENSPPRG00000018070) #29	ENSPPRG00000015212	MYLK4 (ENSPPRG00000014341) #30	GMDS (ENSPPRG00000011992) #32	FOXC1 (ENSPPRG00000014362)	FOXF2 (ENSPPRG00000011053) #34	FOXQ1 (ENSPPRG00000014349) #35	EXOC2 (ENSPPRG00000010340) #37
Artiodactyla	DUPLICATION
Artiodactyla	DUPLICATION
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.s.a #22	ENSGT00940000167417.a	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b
Artiodactyla_a	ANCESTRAL SPECIES	27	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37	ENSGT00940000159059
Pecora	ANCESTRAL SPECIES	32	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37	ENSGT00940000159059
Percora_a	ANCESTRAL SPECIES	12	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.f.a.b.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37
Bovidae	ANCESTRAL SPECIES	13	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.f.a.b.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.a #22
American bison	MODERN SPECIES	2738										ENSBBBG00000001144 #13	ENSBBBG00000001114 #15	FAM217A (ENSBBBG00000001094) #16	PRPF4B (ENSBBBG00000001052) #17	ENSBBBG00000000979 #20	ENSBBBG00000000939 #21	ENSBBBG00000000913 #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.a #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.a #22
Wild yak	MODERN SPECIES	2027													ENSBMUG00000009912 #20	ENSBMUG00000009939 #22	ENSBMUG00000009950 #22	ENSBMUG00000009966 #22	BPHL (ENSBMUG00000009972) #23	RIPK1 (ENSBMUG00000009980) #24	NQO2 (ENSBMUG00000010004) #26	ENSBMUG00000010067 #27
Camelidae	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.a #22
Alpaca	MODERN SPECIES	2132																ENSVPAG00000001566 #22
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.s.a #22	ENSGT00940000167417.a	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Suina	ANCESTRAL SPECIES	8	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a.b	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37
Pig	MODERN SPECIES	15	LY86 (ENSSSCG00000032355)	F13A1 (ENSSSCG00000024310)	NRN1 (ENSSSCG00000026211)	FARS2 (ENSSSCG00000038717)	LYRM4 (ENSSSCG00000031269)	PPP1R3G (ENSSSCG00000000997)	RPP40 (ENSSSCG00000000998)	CDYL (ENSSSCG00000000999)	ECI2 (ENSSSCG00000001000) #13	ENSSSCG00000001001 #15	PRPF4B (ENSSSCG00000001002) #17	FAM50B (ENSSSCG00000026323) #18	PXDC1 (ENSSSCG00000025582) #19	SLC22A23 (ENSSSCG00000001004) #20	ENSSSCG00000036988	TUBB2B (ENSSSCG00000033655) #22	TUBB2A (ENSSSCG00000062050) #22	BPHL (ENSSSCG00000001008) #23	RIPK1 (ENSSSCG00000001009) #24	NQO2 (ENSSSCG00000020758) #26	ENSSSCG00000038404 #27	SERPINB9 (ENSSSCG00000031615)	SERPINB1 (ENSSSCG00000001011) #28	WRNIP1 (ENSSSCG00000001010) #29	ENSSSCG00000028777 #30	FOXC1 (ENSSSCG00000039756)	GMDS (ENSSSCG00000000994) #32	FOXF2 (ENSSSCG00000037195) #34	FOXQ1 (ENSSSCG00000000991) #35	ENSSSCG00000059227	ENSSSCG00000041494
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154150.xb.s.b #22
Bos_a	ANCESTRAL SPECIES	49	ENSGT00950000185466	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000154502.o.b	ENSGT00940000163747	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.e.b.b.b.a #27	ENSGT00940000154519.e.b.b.a.c #27	ENSGT00940000154519.e.a.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Wild yak	MODERN SPECIES	2027															ENSBMUG00000009912 #20	ENSBMUG00000009939 #22	ENSBMUG00000009950 #22	ENSBMUG00000009966 #22	BPHL (ENSBMUG00000009972) #23	RIPK1 (ENSBMUG00000009980) #24	NQO2 (ENSBMUG00000010004) #26	ENSBMUG00000010067 #27
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.s.a #22	ENSGT00940000167417.a	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212
Artiodactyla_a	ANCESTRAL SPECIES	27	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Camelidae	ANCESTRAL SPECIES	54	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00910000147105 #31	ENSGT00440000033640 #32	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Arabian camel	MODERN SPECIES	12	LY86 (ENSCDRG00005009098)	F13A1 (ENSCDRG00005009013)	ENSCDRG00005008875	FARS2 (ENSCDRG00005008824)	LYRM4 (ENSCDRG00005016295)	RPP40 (ENSCDRG00005015971)	CDYL (ENSCDRG00005015913)	ENSCDRG00005015881	ECI2 (ENSCDRG00005015840) #13	ENSCDRG00005015800 #15	FAM217A (ENSCDRG00005015744) #16	PRPF4B (ENSCDRG00005015684) #17	PXDC1 (ENSCDRG00005015617) #19	SLC22A23 (ENSCDRG00005015543) #20	ENSCDRG00005015514 #21	TUBB2B (ENSCDRG00005015474) #22	BPHL (ENSCDRG00005015385) #23	RIPK1 (ENSCDRG00005015351) #24	NQO2 (ENSCDRG00005015309) #26	ENSCDRG00005015210 #27	SERPINB9 (ENSCDRG00005015109)	SERPINB1 (ENSCDRG00005015041) #28	WRNIP1 (ENSCDRG00005014977) #29	MYLK4 (ENSCDRG00005014815) #30	ENSCDRG00005014762 #31	GMDS (ENSCDRG00005014630) #32	EXOC2 (ENSCDRG00005013918) #37	IRF4 (ENSCDRG00005013862)	ENSCDRG00005013769
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.u	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.c #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT01000000221719	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Blue whale	MODERN SPECIES	2	F13A1 (ENSBMSG00010007558)	NRN1 (ENSBMSG00010007552)	FARS2 (ENSBMSG00010007535)	LYRM4 (ENSBMSG00010007512)	PPP1R3G (ENSBMSG00010007505)	RPP40 (ENSBMSG00010007489)	CDYL (ENSBMSG00010007473)	ECI2 (ENSBMSG00010007466) #13	ENSBMSG00010007461	ENSBMSG00010007453 #15	FAM217A (ENSBMSG00010007442) #16	PRPF4B (ENSBMSG00010007428) #17	PXDC1 (ENSBMSG00010007412) #19	SLC22A23 (ENSBMSG00010007297) #20	PSMG4 (ENSBMSG00010007269) #21	TUBB2A (ENSBMSG00010007239) #22	BPHL (ENSBMSG00010007209) #23	RIPK1 (ENSBMSG00010007199) #24	NQO2 (ENSBMSG00010007187) #26	ENSBMSG00010007165 #27	SERPINB9 (ENSBMSG00010007151)	SERPINB1 (ENSBMSG00010007136) #28	WRNIP1 (ENSBMSG00010007123) #29	MYLK4 (ENSBMSG00010007088) #30	ENSBMSG00010007069	GMDS (ENSBMSG00010007043) #32	FOXC1 (ENSBMSG00010007030)	FOXF2 (ENSBMSG00010007027) #34	FOXQ1 (ENSBMSG00010007017) #35	EXOC2 (ENSBMSG00010006978) #37	IRF4 (ENSBMSG00010006934)
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.u	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.c #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT01000000221719	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	9	LY86 (ENSPCTG00005008221)	F13A1 (ENSPCTG00005008252)	NRN1 (ENSPCTG00005008319)	ENSPCTG00005008355	FARS2 (ENSPCTG00005008380)	LYRM4 (ENSPCTG00005008407)	PPP1R3G (ENSPCTG00005008426)	RPP40 (ENSPCTG00005008452)	ENSPCTG00005008550	ECI2 (ENSPCTG00005008598) #13	ENSPCTG00005008657 #15	FAM217A (ENSPCTG00005008731) #16	PRPF4B (ENSPCTG00005008801) #17	PXDC1 (ENSPCTG00005008936) #19	TUBB2A (ENSPCTG00005008977) #22	TUBB2A (ENSPCTG00005009021) #22	BPHL (ENSPCTG00005009057) #23	RIPK1 (ENSPCTG00005009207) #24	NQO2 (ENSPCTG00005009321) #26	ENSPCTG00005009401 #27	SERPINB9 (ENSPCTG00005009506)	ENSPCTG00005009581 #28	WRNIP1 (ENSPCTG00005009615) #29	MYLK4 (ENSPCTG00005009809) #30	ENSPCTG00005010105	GMDS (ENSPCTG00005010205) #32	ENSPCTG00005010376	FOXF2 (ENSPCTG00005010432) #34	EXOC2 (ENSPCTG00005010489) #37	IRF4 (ENSPCTG00005010577)	DUSP22 (ENSPCTG00005010689)
Sperm whale	MODERN SPECIES	9	DSP (ENSPCTG00005007793)	LY86 (ENSPCTG00005008221)	F13A1 (ENSPCTG00005008252)	NRN1 (ENSPCTG00005008319)	ENSPCTG00005008355	FARS2 (ENSPCTG00005008380)	LYRM4 (ENSPCTG00005008407)	PPP1R3G (ENSPCTG00005008426)	RPP40 (ENSPCTG00005008452)	ENSPCTG00005008550	ECI2 (ENSPCTG00005008598) #13	ENSPCTG00005008657 #15	FAM217A (ENSPCTG00005008731) #16	PRPF4B (ENSPCTG00005008801) #17	PXDC1 (ENSPCTG00005008936) #19	TUBB2A (ENSPCTG00005008977) #22	TUBB2A (ENSPCTG00005009021) #22	BPHL (ENSPCTG00005009057) #23	RIPK1 (ENSPCTG00005009207) #24	NQO2 (ENSPCTG00005009321) #26	ENSPCTG00005009401 #27	SERPINB9 (ENSPCTG00005009506)	ENSPCTG00005009581 #28	WRNIP1 (ENSPCTG00005009615) #29	MYLK4 (ENSPCTG00005009809) #30	ENSPCTG00005010105	GMDS (ENSPCTG00005010205) #32	ENSPCTG00005010376	FOXF2 (ENSPCTG00005010432) #34	EXOC2 (ENSPCTG00005010489) #37	IRF4 (ENSPCTG00005010577)
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.u.a	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.c #27	ENSGT00940000154573.u #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT01000000221719	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.u.a	ENSGT00940000155105 #13	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.c #27	ENSGT00940000154573.u #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT01000000221719	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106.u.a	ENSGT00940000155105 #13	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.c #27	ENSGT00390000008538 #29	ENSGT01010000230145	ENSGT00940000156211.b #30	ENSGT01000000221719	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Narwhal	MODERN SPECIES	310	RREB1 (ENSMMNG00015010935)	LY86 (ENSMMNG00015010924)	F13A1 (ENSMMNG00015010895)	NRN1 (ENSMMNG00015010879)	ENSMMNG00015010864	FARS2 (ENSMMNG00015010823)	ENSMMNG00015010792	PPP1R3G (ENSMMNG00015010783)	RPP40 (ENSMMNG00015010735)	ENSMMNG00015010684	ECI2 (ENSMMNG00015010653) #13	PRPF4B (ENSMMNG00015010640) #17	PXDC1 (ENSMMNG00015010618) #19	SLC22A23 (ENSMMNG00015010564) #20	PSMG4 (ENSMMNG00015010506) #21	TUBB2B (ENSMMNG00015010464) #22	BPHL (ENSMMNG00015010397) #23	RIPK1 (ENSMMNG00015010383) #24	NQO2 (ENSMMNG00015010357) #26	ENSMMNG00015010309 #27	WRNIP1 (ENSMMNG00015010266) #29	ENSMMNG00015010243	MYLK4 (ENSMMNG00015010218) #30	ENSMMNG00015010189	GMDS (ENSMMNG00015014105) #32	FOXC1 (ENSMMNG00015014093)	FOXF2 (ENSMMNG00015014085) #34	EXOC2 (ENSMMNG00015014030) #37	IRF4 (ENSMMNG00015014004)	DUSP22 (ENSMMNG00015013987)	VAMP7 (ENSMMNG00015013948)
Beluga whale	MODERN SPECIES	10	RREB1 (ENSDLEG00000001663)	LY86 (ENSDLEG00000001638)	F13A1 (ENSDLEG00000001613)	NRN1 (ENSDLEG00000001599)	FARS2 (ENSDLEG00000001576)	ENSDLEG00000001554	LYRM4 (ENSDLEG00000001535)	PPP1R3G (ENSDLEG00000001526)	RPP40 (ENSDLEG00000001512)	ENSDLEG00000001490	ECI2 (ENSDLEG00000001462) #13	PRPF4B (ENSDLEG00000001431) #17	ENSDLEG00000001426 #19	SLC22A23 (ENSDLEG00000001395) #20	PSMG4 (ENSDLEG00000001383) #21	TUBB2A (ENSDLEG00000001358) #22	BPHL (ENSDLEG00000001285) #23	RIPK1 (ENSDLEG00000001254) #24	NQO2 (ENSDLEG00000001236) #26	ENSDLEG00000001211 #27	WRNIP1 (ENSDLEG00000001184) #29	ENSDLEG00000001175	ENSDLEG00000001169	GMDS (ENSDLEG00000001155) #32	FOXC1 (ENSDLEG00000001148)	FOXF2 (ENSDLEG00000001139) #34	ENSDLEG00000001130	EXOC2 (ENSDLEG00000000911) #37	IRF4 (ENSDLEG00000000806)	ENSDLEG00000000793	ENSDLEG00000000776
Vaquita	MODERN SPECIES	2	RREB1 (ENSPSNG00000014036)	LY86 (ENSPSNG00000014090)	F13A1 (ENSPSNG00000014208)	NRN1 (ENSPSNG00000014328)	FARS2 (ENSPSNG00000014384)	LYRM4 (ENSPSNG00000014436)	PPP1R3G (ENSPSNG00000014484)	RPP40 (ENSPSNG00000014549)	ENSPSNG00000014779	ECI2 (ENSPSNG00000014875) #13	FAM217A (ENSPSNG00000014949) #16	PRPF4B (ENSPSNG00000015086) #17	PXDC1 (ENSPSNG00000015171) #19	SLC22A23 (ENSPSNG00000015233) #20	PSMG4 (ENSPSNG00000015357) #21	TUBB2A (ENSPSNG00000015438) #22	BPHL (ENSPSNG00000015565) #23	RIPK1 (ENSPSNG00000015681) #24	NQO2 (ENSPSNG00000015747) #26	ENSPSNG00000015836 #27	SERPINB1 (ENSPSNG00000015980) #28	WRNIP1 (ENSPSNG00000016040) #29	MYLK4 (ENSPSNG00000016111) #30	ENSPSNG00000016357	GMDS (ENSPSNG00000016429) #32	ENSPSNG00000016521	FOXF2 (ENSPSNG00000016588) #34	FOXQ1 (ENSPSNG00000016632) #35	EXOC2 (ENSPSNG00000016671) #37	IRF4 (ENSPSNG00000016722)	DUSP22 (ENSPSNG00000016848)
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	161															PSMG4 (ENSTTRG00000006146) #21	TUBB2B (ENSTTRG00000006144) #22	ENSTTRG00000006142 #22	BPHL (ENSTTRG00000006140) #23	ENSTTRG00000006137 #24	NQO2 (ENSTTRG00000006128) #26
Dolphin	MODERN SPECIES	161														PSMG4 (ENSTTRG00000006146) #21	TUBB2B (ENSTTRG00000006144) #22	ENSTTRG00000006142 #22	BPHL (ENSTTRG00000006140) #23	ENSTTRG00000006137 #24	NQO2 (ENSTTRG00000006128) #26
Pecora	ANCESTRAL SPECIES	32	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212
Yarkand deer	MODERN SPECIES	30	LY86 (ENSCHYG00000001035)	F13A1 (ENSCHYG00000001064)	NRN1 (ENSCHYG00000001106)	FARS2 (ENSCHYG00000001148)	ENSCHYG00000001244	PPP1R3G (ENSCHYG00000001273)	RPP40 (ENSCHYG00000001289)	CDYL (ENSCHYG00000001347)	ECI2 (ENSCHYG00000001423) #13	ENSCHYG00000001482 #15	FAM217A (ENSCHYG00000001494) #16	PRPF4B (ENSCHYG00000001509) #17	SLC22A23 (ENSCHYG00000001566) #20	PSMG4 (ENSCHYG00000001621) #21	ENSCHYG00000001640	TUBB2B (ENSCHYG00000001657) #22	BPHL (ENSCHYG00000001696) #23	RIPK1 (ENSCHYG00000001750) #24	DUSP22 (ENSCHYG00000001773)	IRF4 (ENSCHYG00000001815)	EXOC2 (ENSCHYG00000001849) #37	FOXF2 (ENSCHYG00000001915) #34	GMDS (ENSCHYG00000001942) #32	WRNIP1 (ENSCHYG00000001991) #29	SERPINB1 (ENSCHYG00000002011) #28	SERPINB9 (ENSCHYG00000002035)
Percora_a	ANCESTRAL SPECIES	12	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.f.a.b.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Siberian musk deer	MODERN SPECIES	96	NRN1 (ENSMMSG00000019951)	FARS2 (ENSMMSG00000019967)	ENSMMSG00000019992	ENSMMSG00000020008	ENSMMSG00000020020	PPP1R3G (ENSMMSG00000020040)	RPP40 (ENSMMSG00000020056)	CDYL (ENSMMSG00000020126)	ECI2 (ENSMMSG00000020168) #13	ENSMMSG00000020286 #15	FAM217A (ENSMMSG00000000080) #16	PRPF4B (ENSMMSG00000000148) #17	PXDC1 (ENSMMSG00000000205) #19	SLC22A23 (ENSMMSG00000000252) #20	PSMG4 (ENSMMSG00000000373) #21	TUBB2B (ENSMMSG00000000409) #22	BPHL (ENSMMSG00000000460) #23	RIPK1 (ENSMMSG00000000490) #24	NQO2 (ENSMMSG00000000521) #26	ENSMMSG00000000568 #27	ENSMMSG00000000678 #27	ENSMMSG00000001423 #27	ENSMMSG00000001460 #27	ENSMMSG00000001478 #27	ENSMMSG00000001505 #27	SERPINB9 (ENSMMSG00000001536)	SERPINB1 (ENSMMSG00000001564) #28	WRNIP1 (ENSMMSG00000001591) #29	MYLK4 (ENSMMSG00000001649) #30	GMDS (ENSMMSG00000001775) #32	FOXC1 (ENSMMSG00000001806)
Bovidae	ANCESTRAL SPECIES	13	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00940000154150.xb.s.a #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.f.a.b.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.e.b.b.a #27	ENSGT00940000154519.e.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212
Bos	ANCESTRAL SPECIES	37	ENSGT00950000185466	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000154502.o.b	ENSGT00940000163747	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.e.b.b.b.a #27	ENSGT00940000154519.e.b.b.a.c #27	ENSGT00940000154519.e.a.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Bos_a	ANCESTRAL SPECIES	49	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000154502.o.b	ENSGT00940000163747	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.e.b.b.b.a #27	ENSGT00940000154519.e.b.b.a.c #27	ENSGT00940000154519.e.a.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35
Domestic yak	MODERN SPECIES	16	ENSBGRG00000007376	ENSBGRG00000007447	SDCBP (ENSBGRG00000007518)	PPP1R3G (ENSBGRG00000007602)	ENSBGRG00000007618	RPP40 (ENSBGRG00000007644)	CDYL (ENSBGRG00000007875)	ECI2 (ENSBGRG00000007960) #13	ENSBGRG00000008092 #15	FAM217A (ENSBGRG00000008153) #16	PRPF4B (ENSBGRG00000008304) #17	PXDC1 (ENSBGRG00000008589) #19	ENSBGRG00000008631	SLC22A23 (ENSBGRG00000008663) #20	ENSBGRG00000008779 #21	TUBB2A (ENSBGRG00000008862) #22	BPHL (ENSBGRG00000008956) #23	RIPK1 (ENSBGRG00000009042) #24	NQO2 (ENSBGRG00000009131) #26	ENSBGRG00000009235 #27	ENSBGRG00000009283 #27	ENSBGRG00000009409 #27	ENSBGRG00000010125 #27	SERPINB9 (ENSBGRG00000010171)	SERPINB1 (ENSBGRG00000010205) #28	WRNIP1 (ENSBGRG00000010299) #29	MYLK4 (ENSBGRG00000010518) #30	GMDS (ENSBGRG00000011025) #32	FOXC1 (ENSBGRG00000011734)	FOXF2 (ENSBGRG00000011788) #34	ENSBGRG00000011879 #35
Wild yak	MODERN SPECIES	2027														ENSBMUG00000009912 #20	ENSBMUG00000009939 #22	ENSBMUG00000009950 #22	ENSBMUG00000009966 #22	BPHL (ENSBMUG00000009972) #23	RIPK1 (ENSBMUG00000009980) #24	NQO2 (ENSBMUG00000010004) #26	ENSBMUG00000010067 #27
Bos_b	ANCESTRAL SPECIES	8	ENSGT00950000185466	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000154502.o.b	ENSGT00940000163747	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.b	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.e.b.b.b.a #27	ENSGT00940000154519.e.b.b.a.c #27	ENSGT00940000154519.e.a.a #27	ENSGT00940000154519.e.a.b #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Cow	DUPLICATION
Cow	MODERN SPECIES	15	ENSBTAG00000049778	FARS2 (ENSBTAG00000018072)	LYRM4 (ENSBTAG00000031432)	ENSBTAG00000018309	PPP1R3G (ENSBTAG00000054777)	ENSBTAG00000051366	RPP40 (ENSBTAG00000003332)	CDYL (ENSBTAG00000016397)	ECI2 (ENSBTAG00000015178) #13	ENSBTAG00000015176 #15	FAM217A (ENSBTAG00000002089) #16	PRPF4B (ENSBTAG00000002086) #17	PXDC1 (ENSBTAG00000026919) #19	SLC22A23 (ENSBTAG00000010943) #20	PSMG4 (ENSBTAG00000031249) #21	TUBB2B (ENSBTAG00000054330) #22	TUBB2A (ENSBTAG00000048485) #22	BPHL (ENSBTAG00000006379) #23	RIPK1 (ENSBTAG00000006378) #24	ENSBTAG00000051842	NQO2 (ENSBTAG00000000786) #26	ENSBTAG00000049906 #27	ENSBTAG00000053741 #27	ENSBTAG00000054098 #27	SERPINB6 (ENSBTAG00000050155) #27	ENSBTAG00000053511 #27	SERPINB9 (ENSBTAG00000031267)	SERPINB1 (ENSBTAG00000011975) #28	WRNIP1 (ENSBTAG00000006166) #29	MYLK4 (ENSBTAG00000012079) #30	GMDS (ENSBTAG00000012058) #32
Cow	MODERN SPECIES	15	FARS2 (ENSBTAG00000018072)	LYRM4 (ENSBTAG00000031432)	ENSBTAG00000018309	PPP1R3G (ENSBTAG00000054777)	ENSBTAG00000051366	RPP40 (ENSBTAG00000003332)	CDYL (ENSBTAG00000016397)	ECI2 (ENSBTAG00000015178) #13	ENSBTAG00000015176 #15	FAM217A (ENSBTAG00000002089) #16	PRPF4B (ENSBTAG00000002086) #17	PXDC1 (ENSBTAG00000026919) #19	SLC22A23 (ENSBTAG00000010943) #20	PSMG4 (ENSBTAG00000031249) #21	TUBB2B (ENSBTAG00000054330) #22	TUBB2A (ENSBTAG00000048485) #22	BPHL (ENSBTAG00000006379) #23	RIPK1 (ENSBTAG00000006378) #24	ENSBTAG00000051842	NQO2 (ENSBTAG00000000786) #26	ENSBTAG00000049906 #27	ENSBTAG00000053741 #27	ENSBTAG00000054098 #27	SERPINB6 (ENSBTAG00000050155) #27	ENSBTAG00000053511 #27	SERPINB9 (ENSBTAG00000031267)	SERPINB1 (ENSBTAG00000011975) #28	WRNIP1 (ENSBTAG00000006166) #29	MYLK4 (ENSBTAG00000012079) #30	GMDS (ENSBTAG00000012058) #32	ENSBTAG00000050875
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	15	LYRM4 (ENSBIXG00005026120)	ENSBIXG00005006186	PPP1R3G (ENSBIXG00005026071)	ENSBIXG00005026061	RPP40 (ENSBIXG00005026040)	CDYL (ENSBIXG00005004428)	ENSBIXG00005007197	ENSBIXG00005025934	ECI2 (ENSBIXG00005025904) #13	ENSBIXG00005025813 #15	FAM217A (ENSBIXG00005025792) #16	PRPF4B (ENSBIXG00005025750) #17	PXDC1 (ENSBIXG00005025631) #19	SLC22A23 (ENSBIXG00005004357) #20	PSMG4 (ENSBIXG00005025413) #21	TUBB2A (ENSBIXG00005025393) #22	ENSBIXG00005025336 #22	BPHL (ENSBIXG00005025316) #23	RIPK1 (ENSBIXG00005004294) #24	ENSBIXG00005025217	NQO2 (ENSBIXG00005025196) #26	ENSBIXG00005025063 #27	ENSBIXG00005024949	ENSBIXG00005024919 #27	SERPINB9 (ENSBIXG00005024704)	SERPINB1 (ENSBIXG00005024645) #28	WRNIP1 (ENSBIXG00005006680) #29	MYLK4 (ENSBIXG00005024549) #30	GMDS (ENSBIXG00005024373) #32	FOXF2 (ENSBIXG00005024208) #34	FOXQ1 (ENSBIXG00005024190) #35
Hybrid Bos Indicus	MODERN SPECIES	15	ENSBIXG00005006186	PPP1R3G (ENSBIXG00005026071)	ENSBIXG00005026061	RPP40 (ENSBIXG00005026040)	CDYL (ENSBIXG00005004428)	ENSBIXG00005007197	ENSBIXG00005025934	ECI2 (ENSBIXG00005025904) #13	ENSBIXG00005025813 #15	FAM217A (ENSBIXG00005025792) #16	PRPF4B (ENSBIXG00005025750) #17	PXDC1 (ENSBIXG00005025631) #19	SLC22A23 (ENSBIXG00005004357) #20	PSMG4 (ENSBIXG00005025413) #21	TUBB2A (ENSBIXG00005025393) #22	ENSBIXG00005025336 #22	BPHL (ENSBIXG00005025316) #23	RIPK1 (ENSBIXG00005004294) #24	ENSBIXG00005025217	NQO2 (ENSBIXG00005025196) #26	ENSBIXG00005025063 #27	ENSBIXG00005024949	ENSBIXG00005024919 #27	SERPINB9 (ENSBIXG00005024704)	SERPINB1 (ENSBIXG00005024645) #28	WRNIP1 (ENSBIXG00005006680) #29	MYLK4 (ENSBIXG00005024549) #30	GMDS (ENSBIXG00005024373) #32	FOXF2 (ENSBIXG00005024208) #34	FOXQ1 (ENSBIXG00005024190) #35	EXOC2 (ENSBIXG00005002582) #37
Caprinae	ANCESTRAL SPECIES	41	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150.xb.t #22	ENSGT00940000175246	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.e.b.a #27	ENSGT00940000154519.f.a.a.a.b #27	ENSGT00940000154931	ENSGT00940000154519.f.a.a.a.a.a #27	ENSGT00940000154519.f.a.b.a #27	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	12	RREB1 (ENSOARG00020025006)	LY86 (ENSOARG00020025014)	F13A1 (ENSOARG00020025035)	NRN1 (ENSOARG00020025044)	FARS2 (ENSOARG00020025055)	LYRM4 (ENSOARG00020025075)	PPP1R3G (ENSOARG00020025083)	RPP40 (ENSOARG00020025115)	CDYL (ENSOARG00020025174)	ENSOARG00020025197 #15	PRPF4B (ENSOARG00020025239) #17	ENSOARG00020025307 #19	SLC22A23 (ENSOARG00020006359) #20	TUBB2A (ENSOARG00020006431) #22	PSMG4 (ENSOARG00020006491) #21	TUBB2B (ENSOARG00020006539) #22	ENSOARG00020006586	RIPK1 (ENSOARG00020006661) #23	RIPK1 (ENSOARG00020006711) #24	ENSOARG00020006784 #26	ENSOARG00020006863 #27	ENSOARG00020007031 #27	ENSOARG00020008292	ENSOARG00020008345 #27	ENSOARG00020008440 #27	SERPINB9 (ENSOARG00020008599)	ENSOARG00020008634 #27	SERPINB1 (ENSOARG00020008679) #28	WRNIP1 (ENSOARG00020008718) #29	ENSOARG00020008839 #30	ENSOARG00020009120
Rambouillet Sheep	MODERN SPECIES	12	SSR1 (ENSOARG00020024975)	ENSOARG00020024996	RREB1 (ENSOARG00020025006)	LY86 (ENSOARG00020025014)	F13A1 (ENSOARG00020025035)	NRN1 (ENSOARG00020025044)	FARS2 (ENSOARG00020025055)	LYRM4 (ENSOARG00020025075)	PPP1R3G (ENSOARG00020025083)	RPP40 (ENSOARG00020025115)	CDYL (ENSOARG00020025174)	ENSOARG00020025197 #15	PRPF4B (ENSOARG00020025239) #17	ENSOARG00020025307 #19	SLC22A23 (ENSOARG00020006359) #20	TUBB2A (ENSOARG00020006431) #22	PSMG4 (ENSOARG00020006491) #21	TUBB2B (ENSOARG00020006539) #22	ENSOARG00020006586	RIPK1 (ENSOARG00020006661) #23	RIPK1 (ENSOARG00020006711) #24	ENSOARG00020006784 #26	ENSOARG00020006863 #27	ENSOARG00020007031 #27	ENSOARG00020008292	ENSOARG00020008345 #27	ENSOARG00020008440 #27	SERPINB9 (ENSOARG00020008599)	ENSOARG00020008634 #27	SERPINB1 (ENSOARG00020008679) #28	WRNIP1 (ENSOARG00020008718) #29
Goat	DUPLICATION
Goat	MODERN SPECIES	15	NRN1 (ENSCHIG00000023169)	ENSCHIG00000017222	FARS2 (ENSCHIG00000017678)	LYRM4 (ENSCHIG00000010740)	PPP1R3G (ENSCHIG00000017990)	ENSCHIG00000022246	RPP40 (ENSCHIG00000016849)	CDYL (ENSCHIG00000021846)	ECI2 (ENSCHIG00000016201) #13	ENSCHIG00000021666 #15	ENSCHIG00000023235 #16	PRPF4B (ENSCHIG00000014208) #17	PXDC1 (ENSCHIG00000025104) #19	SLC22A23 (ENSCHIG00000013035) #20	PSMG4 (ENSCHIG00000018602) #21	TUBB2B (ENSCHIG00000021272) #22	TUBB2A (ENSCHIG00000025595) #22	BPHL (ENSCHIG00000018519) #23	RIPK1 (ENSCHIG00000026577) #24	NQO2 (ENSCHIG00000014702) #26	ENSCHIG00000020501 #27	ENSCHIG00000014090 #27	ENSCHIG00000013116 #27	HDGFL1 (ENSCHIG00000011655)	ENSCHIG00000010444	ENSCHIG00000017218	SOX4 (ENSCHIG00000013419)	CDKAL1 (ENSCHIG00000022647)	ENSCHIG00000022931	ENSCHIG00000010662	MBOAT1 (ENSCHIG00000009573)
Goat	MODERN SPECIES	15	ENSCHIG00000017222	FARS2 (ENSCHIG00000017678)	LYRM4 (ENSCHIG00000010740)	PPP1R3G (ENSCHIG00000017990)	ENSCHIG00000022246	RPP40 (ENSCHIG00000016849)	CDYL (ENSCHIG00000021846)	ECI2 (ENSCHIG00000016201) #13	ENSCHIG00000021666 #15	ENSCHIG00000023235 #16	PRPF4B (ENSCHIG00000014208) #17	PXDC1 (ENSCHIG00000025104) #19	SLC22A23 (ENSCHIG00000013035) #20	PSMG4 (ENSCHIG00000018602) #21	TUBB2B (ENSCHIG00000021272) #22	TUBB2A (ENSCHIG00000025595) #22	BPHL (ENSCHIG00000018519) #23	RIPK1 (ENSCHIG00000026577) #24	NQO2 (ENSCHIG00000014702) #26	ENSCHIG00000020501 #27	ENSCHIG00000014090 #27	ENSCHIG00000013116 #27	HDGFL1 (ENSCHIG00000011655)	ENSCHIG00000010444	ENSCHIG00000017218	SOX4 (ENSCHIG00000013419)	CDKAL1 (ENSCHIG00000022647)	ENSCHIG00000022931	ENSCHIG00000010662	MBOAT1 (ENSCHIG00000009573)	ID4 (ENSCHIG00000020094)
Suina	ANCESTRAL SPECIES	8	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167417.a.b	ENSGT00940000154150.xb.s.b #22	ENSGT00940000154150.xb.t #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519 #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT01070000257212	ENSGT00390000010872 #37	ENSGT00940000159059
Pig	MODERN SPECIES	15	F13A1 (ENSSSCG00000024310)	NRN1 (ENSSSCG00000026211)	FARS2 (ENSSSCG00000038717)	LYRM4 (ENSSSCG00000031269)	PPP1R3G (ENSSSCG00000000997)	RPP40 (ENSSSCG00000000998)	CDYL (ENSSSCG00000000999)	ECI2 (ENSSSCG00000001000) #13	ENSSSCG00000001001 #15	PRPF4B (ENSSSCG00000001002) #17	FAM50B (ENSSSCG00000026323) #18	PXDC1 (ENSSSCG00000025582) #19	SLC22A23 (ENSSSCG00000001004) #20	ENSSSCG00000036988	TUBB2B (ENSSSCG00000033655) #22	TUBB2A (ENSSSCG00000062050) #22	BPHL (ENSSSCG00000001008) #23	RIPK1 (ENSSSCG00000001009) #24	NQO2 (ENSSSCG00000020758) #26	ENSSSCG00000038404 #27	SERPINB9 (ENSSSCG00000031615)	SERPINB1 (ENSSSCG00000001011) #28	WRNIP1 (ENSSSCG00000001010) #29	ENSSSCG00000028777 #30	FOXC1 (ENSSSCG00000039756)	GMDS (ENSSSCG00000000994) #32	FOXF2 (ENSSSCG00000037195) #34	FOXQ1 (ENSSSCG00000000991) #35	ENSSSCG00000059227	ENSSSCG00000041494	EXOC2 (ENSSSCG00000000985) #37
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	780															ENSCWAG00000009446 #22	TUBB2A (ENSCWAG00000010033) #22	BPHL (ENSCWAG00000010053) #23	RIPK1 (ENSCWAG00000010115) #24	NQO2 (ENSCWAG00000010221) #26	ENSCWAG00000010295 #27	SERPINB9 (ENSCWAG00000010349)	SERPINB1 (ENSCWAG00000010393) #28	WRNIP1 (ENSCWAG00000010435) #29	MYLK4 (ENSCWAG00000010554) #30	GMDS (ENSCWAG00000010697) #32
Chacoan peccary	MODERN SPECIES	780																ENSCWAG00000009446 #22	TUBB2A (ENSCWAG00000010033) #22	BPHL (ENSCWAG00000010053) #23	RIPK1 (ENSCWAG00000010115) #24	NQO2 (ENSCWAG00000010221) #26	ENSCWAG00000010295 #27	SERPINB9 (ENSCWAG00000010349)	SERPINB1 (ENSCWAG00000010393) #28	WRNIP1 (ENSCWAG00000010435) #29	MYLK4 (ENSCWAG00000010554) #30	GMDS (ENSCWAG00000010697) #32
Atlantogenata	ANCESTRAL SPECIES	86	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000168960	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.j #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Xenarthra	ANCESTRAL SPECIES	531														ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000174583	ENSGT00940000156563 #26	ENSGT00940000154519.j #27	ENSGT00940000154931.h
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2012																ENSDNOG00000041366 #22
Armadillo	MODERN SPECIES	4572					CD200 (ENSDNOG00000004455)	ENSDNOG00000035110	SLC9C1 (ENSDNOG00000006265)	ENSDNOG00000011769	C3orf52 (ENSDNOG00000032086)	TAGLN3 (ENSDNOG00000046524)	ABHD10 (ENSDNOG00000044065)	PHLDB2 (ENSDNOG00000013616)	PLCXD2 (ENSDNOG00000025935)	SLC22A23 (ENSDNOG00000030775) #20	PSMG4 (ENSDNOG00000010146) #21	ENSDNOG00000006449 #22	ENSDNOG00000010566 #22	BPHL (ENSDNOG00000004617) #23	ENSDNOG00000030682	NQO2 (ENSDNOG00000031821) #26	ENSDNOG00000048294 #27	ENSDNOG00000004180
Armadillo	MODERN SPECIES	4572				CD200 (ENSDNOG00000004455)	ENSDNOG00000035110	SLC9C1 (ENSDNOG00000006265)	ENSDNOG00000011769	C3orf52 (ENSDNOG00000032086)	TAGLN3 (ENSDNOG00000046524)	ABHD10 (ENSDNOG00000044065)	PHLDB2 (ENSDNOG00000013616)	PLCXD2 (ENSDNOG00000025935)	SLC22A23 (ENSDNOG00000030775) #20	PSMG4 (ENSDNOG00000010146) #21	ENSDNOG00000006449 #22	ENSDNOG00000010566 #22	BPHL (ENSDNOG00000004617) #23	ENSDNOG00000030682	NQO2 (ENSDNOG00000031821) #26	ENSDNOG00000048294 #27	ENSDNOG00000004180
Afrotheria	ANCESTRAL SPECIES	94	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000168960	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167514	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.i.a.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Tenrec	MODERN SPECIES	3324																TUBB2A (ENSETEG00000006085) #22
Afrotheria_a	ANCESTRAL SPECIES	96	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000168960	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00390000004735.B #18	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000167514	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563 #26	ENSGT00940000154519.i.a.a #27	ENSGT00940000154931	ENSGT00940000154573 #28	ENSGT00390000008538 #29	ENSGT00940000156211.b #30	ENSGT00440000033640 #32	ENSGT00940000162303.b	ENSGT00940000162527 #34	ENSGT00940000162937.b #35	ENSGT00390000010872 #37	ENSGT00940000159059	ENSGT00940000157153
Hyrax	MODERN SPECIES	2720																ENSPCAG00000002925 #22
Elephant	DUPLICATION
Elephant	DUPLICATION
Elephant	MODERN SPECIES	447	NRN1 (ENSLAFG00000012437)	FARS2 (ENSLAFG00000007104)	LYRM4 (ENSLAFG00000020549)	PPP1R3G (ENSLAFG00000031926)	RPP40 (ENSLAFG00000007530)	CDYL (ENSLAFG00000018419)	ECI2 (ENSLAFG00000000020) #13	ENSLAFG00000027067	FAM217A (ENSLAFG00000022708) #16	ENSLAFG00000027337	PRPF4B (ENSLAFG00000004109) #17	FAM50B (ENSLAFG00000006170) #18	PXDC1 (ENSLAFG00000018619) #19	SLC22A23 (ENSLAFG00000012205) #20	ENSLAFG00000032203	ENSLAFG00000027462 #22	ENSLAFG00000031279 #22	ENSLAFG00000010068 #22	BPHL (ENSLAFG00000010064) #23	RIPK1 (ENSLAFG00000010059) #24	NQO2 (ENSLAFG00000031167) #26	ENSLAFG00000011947 #27	SERPINB9 (ENSLAFG00000007487)	SERPINB1 (ENSLAFG00000006794) #28	WRNIP1 (ENSLAFG00000014603) #29	MYLK4 (ENSLAFG00000014597) #30	GMDS (ENSLAFG00000012336) #32	ENSLAFG00000029094	FOXC1 (ENSLAFG00000028626)	FOXF2 (ENSLAFG00000002074) #34	FOXQ1 (ENSLAFG00000000082) #35
Elephant	MODERN SPECIES	447	LYRM4 (ENSLAFG00000020549)	PPP1R3G (ENSLAFG00000031926)	RPP40 (ENSLAFG00000007530)	CDYL (ENSLAFG00000018419)	ECI2 (ENSLAFG00000000020) #13	ENSLAFG00000027067	FAM217A (ENSLAFG00000022708) #16	ENSLAFG00000027337	PRPF4B (ENSLAFG00000004109) #17	FAM50B (ENSLAFG00000006170) #18	PXDC1 (ENSLAFG00000018619) #19	SLC22A23 (ENSLAFG00000012205) #20	ENSLAFG00000032203	ENSLAFG00000027462 #22	ENSLAFG00000031279 #22	ENSLAFG00000010068 #22	BPHL (ENSLAFG00000010064) #23	RIPK1 (ENSLAFG00000010059) #24	NQO2 (ENSLAFG00000031167) #26	ENSLAFG00000011947 #27	SERPINB9 (ENSLAFG00000007487)	SERPINB1 (ENSLAFG00000006794) #28	WRNIP1 (ENSLAFG00000014603) #29	MYLK4 (ENSLAFG00000014597) #30	GMDS (ENSLAFG00000012336) #32	ENSLAFG00000029094	FOXC1 (ENSLAFG00000028626)	FOXF2 (ENSLAFG00000002074) #34	FOXQ1 (ENSLAFG00000000082) #35	ENSLAFG00000030668	EXOC2 (ENSLAFG00000012946) #37
Elephant	MODERN SPECIES	447	FARS2 (ENSLAFG00000007104)	LYRM4 (ENSLAFG00000020549)	PPP1R3G (ENSLAFG00000031926)	RPP40 (ENSLAFG00000007530)	CDYL (ENSLAFG00000018419)	ECI2 (ENSLAFG00000000020) #13	ENSLAFG00000027067	FAM217A (ENSLAFG00000022708) #16	ENSLAFG00000027337	PRPF4B (ENSLAFG00000004109) #17	FAM50B (ENSLAFG00000006170) #18	PXDC1 (ENSLAFG00000018619) #19	SLC22A23 (ENSLAFG00000012205) #20	ENSLAFG00000032203	ENSLAFG00000027462 #22	ENSLAFG00000031279 #22	ENSLAFG00000010068 #22	BPHL (ENSLAFG00000010064) #23	RIPK1 (ENSLAFG00000010059) #24	NQO2 (ENSLAFG00000031167) #26	ENSLAFG00000011947 #27	SERPINB9 (ENSLAFG00000007487)	SERPINB1 (ENSLAFG00000006794) #28	WRNIP1 (ENSLAFG00000014603) #29	MYLK4 (ENSLAFG00000014597) #30	GMDS (ENSLAFG00000012336) #32	ENSLAFG00000029094	FOXC1 (ENSLAFG00000028626)	FOXF2 (ENSLAFG00000002074) #34	FOXQ1 (ENSLAFG00000000082) #35	ENSLAFG00000030668
Marsupialia	ANCESTRAL SPECIES	1	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563.f #26	ENSGT00940000156563.e #26	ENSGT00940000157153	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00940000162917	ENSGT00390000002200.a.b
Opossum	MODERN SPECIES	2	ENSMODG00000042097	FARS2 (ENSMODG00000009839)	ENSMODG00000042735	ENSMODG00000049736	RPP40 (ENSMODG00000009826)	ENSMODG00000009804	ENSMODG00000027364	ECI2 (ENSMODG00000009786) #13	ENSMODG00000036689 #15	FAM217A (ENSMODG00000009773) #16	ENSMODG00000009756 #17	ENSMODG00000028179	PXDC1 (ENSMODG00000008942) #19	SLC22A23 (ENSMODG00000008782) #20	PSMG4 (ENSMODG00000038283) #21	TUBB2A (ENSMODG00000024592) #22	BPHL (ENSMODG00000008512) #23	RIPK1 (ENSMODG00000008505) #24	ENSMODG00000008493 #26	ENSMODG00000046608 #26	DUSP22 (ENSMODG00000050834)	IRF4 (ENSMODG00000008383)	EXOC2 (ENSMODG00000008367) #37	ENSMODG00000008316 #35	FOXF2 (ENSMODG00000008307) #34	ENSMODG00000008294	ENSMODG00000024590	GMDS (ENSMODG00000008260) #32	ENSMODG00000028941 #30	WRNIP1 (ENSMODG00000008193) #29	ENSMODG00000047146
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563.f #26	ENSGT00940000157153.u	ENSGT00940000156563.e #26	ENSGT00940000157153.v.b	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00940000162917
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563.f #26	ENSGT00940000157153.u	ENSGT00940000156563.e #26	ENSGT00940000157153.v.b	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00940000162917
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	11194																TUBB2B (ENSMEUG00000012226) #22
Wallaby	MODERN SPECIES	4396																TUBB2A (ENSMEUG00000003738) #22	ENSMEUG00000003729 #23
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105 #13	ENSGT00390000008360 #15	ENSGT00940000154543.b #16	ENSGT00940000155562 #17	ENSGT00910000144592	ENSGT00390000009209 #19	ENSGT00940000157354 #20	ENSGT00390000011804 #21	ENSGT00940000154150 #22	ENSGT00390000004746 #23	ENSGT00940000159347 #24	ENSGT00940000156563.f #26	ENSGT00940000157153.u	ENSGT00940000156563.e #26	ENSGT00940000157153.v.b	ENSGT00940000159059	ENSGT00390000010872 #37	ENSGT00940000162937.b #35	ENSGT00940000162527 #34	ENSGT00940000162303.b	ENSGT00440000033640 #32	ENSGT00940000156211.b #30	ENSGT00390000008538 #29	ENSGT00530000063786.a.p
koala	MODERN SPECIES	296														SLC22A23 (ENSPCIG00000000903) #20	ENSPCIG00000000888	TUBB2B (ENSPCIG00000022050) #22	BPHL (ENSPCIG00000022052) #23	RIPK1 (ENSPCIG00000022064) #24	ENSPCIG00000012249 #26	ENSPCIG00000022067 #26	DUSP22 (ENSPCIG00000037144)	IRF4 (ENSPCIG00000022070)	EXOC2 (ENSPCIG00000022073) #37	FOXQ1 (ENSPCIG00000007926) #35	FOXF2 (ENSPCIG00000011639) #34	FOXC1 (ENSPCIG00000035615)
Common wonbat	MODERN SPECIES	34	FARS2 (ENSVURG00010004338)	LYRM4 (ENSVURG00010004361)	ENSVURG00010004367	RPP40 (ENSVURG00010004377)	ENSVURG00010004414	ENSVURG00010004422	ENSVURG00010004427	ENSVURG00010004444	ECI2 (ENSVURG00010004465) #13	FAM217A (ENSVURG00010004476) #16	PRPF4B (ENSVURG00010004483) #17	ENSVURG00010004506	PXDC1 (ENSVURG00010004534) #19	SLC22A23 (ENSVURG00010004586) #20	PSMG4 (ENSVURG00010004617) #21	TUBB2A (ENSVURG00010004658) #22	BPHL (ENSVURG00010004675) #23	RIPK1 (ENSVURG00010004694) #24	ENSVURG00010004709 #26	ENSVURG00010004723	IRF4 (ENSVURG00010004732)	EXOC2 (ENSVURG00010004782) #37	FOXF2 (ENSVURG00010004836) #34	FOXC1 (ENSVURG00010004905)	GMDS (ENSVURG00010004946) #32	ENSVURG00010004983	MYLK4 (ENSVURG00010005033) #30	WRNIP1 (ENSVURG00010005089) #29	ENSVURG00010005123	ENSVURG00010005129	PSKH2 (ENSVURG00010005146)
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		NRN1 (ENSSHAG00000020937)	FARS2 (ENSSHAG00000026087)	PPP1R3G (ENSSHAG00000025505)	ENSSHAG00000007760	RPP40 (ENSSHAG00000002102)	ENSSHAG00000008802	ECI2 (ENSSHAG00000031929) #13	ENSSHAG00000006576 #15	ENSSHAG00000007175 #16	PRPF4B (ENSSHAG00000007603) #17	ENSSHAG00000028945	PXDC1 (ENSSHAG00000009869) #19	ENSSHAG00000029443	SLC22A23 (ENSSHAG00000023393) #20	PSMG4 (ENSSHAG00000030196) #21	TUBB2B (ENSSHAG00000007892) #22	TUBB2A (ENSSHAG00000021520) #22	BPHL (ENSSHAG00000014312) #23	RIPK1 (ENSSHAG00000014446) #24	ENSSHAG00000014609 #26	ENSSHAG00000015165	ENSSHAG00000022026 #26	IRF4 (ENSSHAG00000015592)	EXOC2 (ENSSHAG00000001430) #37	FOXQ1 (ENSSHAG00000012341) #35	FOXF2 (ENSSHAG00000012720) #34	FOXC1 (ENSSHAG00000023841)	GMDS (ENSSHAG00000031057) #32	MYLK4 (ENSSHAG00000026920) #30	ENSSHAG00000014703 #29	ENSSHAG00000025112
Tasmanian devil	MODERN SPECIES		FARS2 (ENSSHAG00000026087)	PPP1R3G (ENSSHAG00000025505)	ENSSHAG00000007760	RPP40 (ENSSHAG00000002102)	ENSSHAG00000008802	ECI2 (ENSSHAG00000031929) #13	ENSSHAG00000006576 #15	ENSSHAG00000007175 #16	PRPF4B (ENSSHAG00000007603) #17	ENSSHAG00000028945	PXDC1 (ENSSHAG00000009869) #19	ENSSHAG00000029443	SLC22A23 (ENSSHAG00000023393) #20	PSMG4 (ENSSHAG00000030196) #21	TUBB2B (ENSSHAG00000007892) #22	TUBB2A (ENSSHAG00000021520) #22	BPHL (ENSSHAG00000014312) #23	RIPK1 (ENSSHAG00000014446) #24	ENSSHAG00000014609 #26	ENSSHAG00000015165	ENSSHAG00000022026 #26	IRF4 (ENSSHAG00000015592)	EXOC2 (ENSSHAG00000001430) #37	FOXQ1 (ENSSHAG00000012341) #35	FOXF2 (ENSSHAG00000012720) #34	FOXC1 (ENSSHAG00000023841)	GMDS (ENSSHAG00000031057) #32	MYLK4 (ENSSHAG00000026920) #30	ENSSHAG00000014703 #29	ENSSHAG00000025112	ENSSHAG00000031754
Platypus	DUPLICATION
Platypus	MODERN SPECIES	23									ENSOANG00000037725	SSR1Y (ENSOANG00000048793)	ENSOANG00000048797	ENSOANG00000041525	ENSOANG00000014951 #17	ENSOANG00000014953 #20	ENSOANG00000031691 #21	TUBB2B (ENSOANG00000047005) #22	ENSOANG00000036177 #23	ENSOANG00000039611	ENSOANG00000040013 #24	ENSOANG00000041660 #26	ENSOANG00000044106	ENSOANG00000050518	ENSOANG00000042886 #37	ENSOANG00000039862 #34	ENSOANG00000036916
Platypus	MODERN SPECIES	86	ENSOANG00000032215	ENSOANG00000031552	F13A1 (ENSOANG00000045613)	NRN1 (ENSOANG00000039068)	FARS2 (ENSOANG00000001199)	ENSOANG00000050753	RPP40 (ENSOANG00000001200)	ENSOANG00000001201	ECI2 (ENSOANG00000043493) #13	ENSOANG00000047145 #15	ENSOANG00000050718 #17	ENSOANG00000028882	PXDC1 (ENSOANG00000050046) #19	ENSOANG00000044215 #20	ENSOANG00000040291 #21	ENSOANG00000004797 #22	ENSOANG00000014956 #23	ENSOANG00000014957 #24	ENSOANG00000014959 #26	ENSOANG00000014901	ENSOANG00000006326	ENSOANG00000006327 #37	ENSOANG00000041195 #34	ENSOANG00000041907	GMDS (ENSOANG00000029425) #32	ENSOANG00000044472 ##30	WRNIP1 (ENSOANG00000015739) #29	ENSOANG00000015740	DROSHA (ENSOANG00000015744)	CDH6 (ENSOANG00000015746)	CDH9 (ENSOANG00000002505)