Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #9	ENSGT00510000047648 #10	ENSGT00940000155805 #11	ENSGT00940000157302 #12	ENSGT01030000234539.a.a.b.b #15	ENSGT01030000234535.C #16	ENSGT00390000018830 #18	ENSGT00940000156997 #19	ENSGT00390000016167 #20	ENSGT00390000006029.q #21	ENSGT00550000074846 #22	ENSGT00940000158788 #25	ENSGT00390000007354 #26	ENSGT01080000257333.E.o.a #27	ENSGT00390000018729.a.a #28	ENSGT00390000018729.a.b #29	ENSGT00940000158784 #30	ENSGT00940000159026 #31	ENSGT00940000161402 #32	ENSGT00940000156943 #33	ENSGT00940000158673 #36	ENSGT00390000011152 #37	ENSGT00940000164615	ENSGT00390000018344	ENSGT00940000154807.b	ENSGT00940000157051
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #9	ENSGT00510000047648 #10	ENSGT00940000155805 #11	ENSGT00940000157302 #12	ENSGT01030000234539.a.a.b.b #15	ENSGT01030000234535.C #16	ENSGT00390000018830 #18	ENSGT00940000156997 #19	ENSGT00390000016167 #20	ENSGT00390000006029.q #21	ENSGT00390000006029.p ##21	ENSGT00550000074846 #22	ENSGT00940000158788 #25	ENSGT00390000007354 #26	ENSGT01080000257333.E.o.a #27	ENSGT00390000018729.a.a #28	ENSGT00390000018729.a.b #29	ENSGT00940000158784 #30	ENSGT00940000159026 #31	ENSGT00940000161402 #32	ENSGT00940000156943 #33	ENSGT00940000158673 #36	ENSGT00390000011152 #37	ENSGT00940000164615	ENSGT00390000018344	ENSGT00940000154807.b	ENSGT00940000157051
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #9	ENSGT00510000047648 #10	ENSGT00940000155805 #11	ENSGT00940000157302 #12	ENSGT01030000234539.a.a.b.b #15	ENSGT01030000234535.C #16	ENSGT00390000018830 #18	ENSGT00940000156997 #19	ENSGT00390000016167 #20	ENSGT00390000006029.q #21	ENSGT00550000074846 #22	ENSGT00940000158788 #25	ENSGT00390000007354 #26	ENSGT01080000257333.E.o.a #27	ENSGT00390000018729.a.a #28	ENSGT00390000018729.a.b #29	ENSGT00940000158784 #30	ENSGT00940000159026 #31	ENSGT00940000161402 #32	ENSGT00940000156943 #33	ENSGT00940000158673 #36	ENSGT00390000011152 #37	ENSGT00390000018344	ENSGT00940000154807.b	ENSGT00940000157051	ENSGT00390000000916
Degu	MODERN SPECIES	44	ENSODEG00000018340 #7	ENSODEG00000018367 #8	SKOR2 (ENSODEG00000018363) #9	IER3IP1 (ENSODEG00000018375) #10	HDHD2 (ENSODEG00000018388) #11	KATNAL2 (ENSODEG00000018481) #12	ENSODEG00000018457 #13	ENSODEG00000020536 #14	ENSODEG00000018432 #15	ST8SIA5 (ENSODEG00000018352) #16	ENSODEG00000020498 #17	LOXHD1 (ENSODEG00000018482) #18	RNF165 (ENSODEG00000018412) #19	C18orf25 (ENSODEG00000018458) #20	ENSODEG00000018366 #21	ATP5F1A (ENSODEG00000018359) #22	ENSODEG00000020534 #23	ENSODEG00000018334 #24	PSTPIP2 (ENSODEG00000018461) #25	EPG5 (ENSODEG00000018404) #26	SIGLEC15 (ENSODEG00000018459) #27	SLC14A1 (ENSODEG00000018379) #28	SLC14A2 (ENSODEG00000018353) #29	SETBP1 (ENSODEG00000018419) #30	SYT4 (ENSODEG00000018346) #31	RIT2 (ENSODEG00000018423) #32	PIK3C3 (ENSODEG00000018465) #33	ENSODEG00000018374 #34	ENSODEG00000018343 #35	CELF4 (ENSODEG00000018464) #36	ENSODEG00000018335 #37
Long-tailed chinchilla	MODERN SPECIES	109	DYM (ENSCLAG00000008080)	SMAD7 (ENSCLAG00000007063)	CTIF (ENSCLAG00000008174)	ZBTB7C (ENSCLAG00000012082)	SMAD2 (ENSCLAG00000011258)	SKOR2 (ENSCLAG00000012544) #9	IER3IP1 (ENSCLAG00000007652) #10	HDHD2 (ENSCLAG00000006391) #11	KATNAL2 (ENSCLAG00000013657) #12	ENSCLAG00000011621 #15	ST8SIA5 (ENSCLAG00000012639) #16	LOXHD1 (ENSCLAG00000011718) #18	RNF165 (ENSCLAG00000009534) #19	C18orf25 (ENSCLAG00000008611) #20	HAUS1 (ENSCLAG00000012155) ##21	ATP5F1A (ENSCLAG00000014431) #22	ENSCLAG00000015055	PSTPIP2 (ENSCLAG00000011006) #25	EPG5 (ENSCLAG00000009230) #26	SIGLEC15 (ENSCLAG00000007394) #27	SLC14A1 (ENSCLAG00000007299) #28	SLC14A2 (ENSCLAG00000012015) #29	SETBP1 (ENSCLAG00000010509) #30	ENSCLAG00000008619	SYT4 (ENSCLAG00000008440) #31	RIT2 (ENSCLAG00000007553) #32	PIK3C3 (ENSCLAG00000014762) #33	CELF4 (ENSCLAG00000008344) #36	KIAA1328 (ENSCLAG00000009322) #37	TPGS2 (ENSCLAG00000008336)	FHOD3 (ENSCLAG00000010998)
Guinea pig	MODERN SPECIES	14	C18orf32 (ENSCPOG00000034745)	DYM (ENSCPOG00000013484)	SMAD7 (ENSCPOG00000030295)	CTIF (ENSCPOG00000001049)	ZBTB7C (ENSCPOG00000040464)	SMAD2 (ENSCPOG00000013398)	SKOR2 (ENSCPOG00000021920) #9	IER3IP1 (ENSCPOG00000040200) #10	HDHD2 (ENSCPOG00000030325) #11	KATNAL2 (ENSCPOG00000008150) #12	ENSCPOG00000003067 #15	ST8SIA5 (ENSCPOG00000030161) #16	LOXHD1 (ENSCPOG00000009824) #18	RNF165 (ENSCPOG00000009298) #19	HAUS1 (ENSCPOG00000012723) ##21	ATP5F1A (ENSCPOG00000012719) #22	PSTPIP2 (ENSCPOG00000004876) #25	EPG5 (ENSCPOG00000012114) #26	SLC14A1 (ENSCPOG00000007979) #28	ENSCPOG00000007976 #29	SETBP1 (ENSCPOG00000011164) #30	SYT4 (ENSCPOG00000009941) #31	RIT2 (ENSCPOG00000009357) #32	PIK3C3 (ENSCPOG00000004375) #33	ENSCPOG00000040621	CELF4 (ENSCPOG00000035956) #36	ENSCPOG00000040211 #37	ENSCPOG00000033026	TPGS2 (ENSCPOG00000001354)	FHOD3 (ENSCPOG00000001349)	MOCOS (ENSCPOG00000012104)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000040505	ENSHGLG00000048272	ENSHGLG00000042101	ENSHGLG00000031912	SMAD2 (ENSHGLG00000008711)	SKOR2 (ENSHGLG00000035792) #9	ENSHGLG00000048898 #10	HDHD2 (ENSHGLG00000010130) #11	ENSHGLG00000034217 #12	ENSHGLG00000040167	PIAS2 (ENSHGLG00000015588) #15	ST8SIA5 (ENSHGLG00000040367) #16	ENSHGLG00000006211 #18	RNF165 (ENSHGLG00000035767) #19	C18orf25 (ENSHGLG00000041108) #20	ENSHGLG00000036445 #22	ENSHGLG00000036850 #21	ENSHGLG00000009522 #22	PSTPIP2 (ENSHGLG00000005740) #25	SLC14A1 (ENSHGLG00000007316) #28	ENSHGLG00000005880 #29	ENSHGLG00000046959 #29	ENSHGLG00000033588	ENSHGLG00000040364 #30	ENSHGLG00000001864	ENSHGLG00000041163	ENSHGLG00000043125	ENSHGLG00000002070	ENSHGLG00000039994	ENSHGLG00000048003	ENSHGLG00000048589 #31
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000042101	ENSHGLG00000031912	SMAD2 (ENSHGLG00000008711)	SKOR2 (ENSHGLG00000035792) #9	ENSHGLG00000048898 #10	HDHD2 (ENSHGLG00000010130) #11	ENSHGLG00000034217 #12	ENSHGLG00000040167	PIAS2 (ENSHGLG00000015588) #15	ST8SIA5 (ENSHGLG00000040367) #16	ENSHGLG00000006211 #18	RNF165 (ENSHGLG00000035767) #19	C18orf25 (ENSHGLG00000041108) #20	ENSHGLG00000036445 #22	ENSHGLG00000036850 #21	ENSHGLG00000009522 #22	PSTPIP2 (ENSHGLG00000005740) #25	SLC14A1 (ENSHGLG00000007316) #28	ENSHGLG00000005880 #29	ENSHGLG00000046959 #29	ENSHGLG00000033588	ENSHGLG00000040364 #30	ENSHGLG00000001864	ENSHGLG00000041163	ENSHGLG00000043125	ENSHGLG00000002070	ENSHGLG00000039994	ENSHGLG00000048003	ENSHGLG00000048589 #31	RIT2 (ENSHGLG00000002499) #32	ENSHGLG00000037189