Rodentia_A ANCESTRAL SPECIES 23 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00390000002428.a.g.b ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029 #21 ENSGT00550000074846 #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Hystricomorpha ANCESTRAL SPECIES 32 ENSGT00390000008772 #7 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029.q ##21 ENSGT00550000074846 #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Hystricomorpha_a ANCESTRAL SPECIES 26 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029.q ##21 ENSGT00390000006029.p #21 ENSGT00550000074846 #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Hystricomorpha_b ANCESTRAL SPECIES 21 ENSGT00390000008772 #7 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029.q ##21 ENSGT00550000074846 #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 ENSGT00390000000916 Long-tailed chinchilla MODERN SPECIES 109 DYM (ENSCLAG00000008080) #7 SMAD7 (ENSCLAG00000007063) #8 CTIF (ENSCLAG00000008174) #9 ZBTB7C (ENSCLAG00000012082) #10 SMAD2 (ENSCLAG00000011258) #11 SKOR2 (ENSCLAG00000012544) #12 IER3IP1 (ENSCLAG00000007652) #13 HDHD2 (ENSCLAG00000006391) #14 KATNAL2 (ENSCLAG00000013657) #15 ENSCLAG00000011621 #16 ST8SIA5 (ENSCLAG00000012639) #17 LOXHD1 (ENSCLAG00000011718) #18 RNF165 (ENSCLAG00000009534) #19 C18orf25 (ENSCLAG00000008611) #20 HAUS1 (ENSCLAG00000012155) #21 ATP5F1A (ENSCLAG00000014431) #22 ENSCLAG00000015055 #23 PSTPIP2 (ENSCLAG00000011006) #24 EPG5 (ENSCLAG00000009230) #25 SIGLEC15 (ENSCLAG00000007394) #26 SLC14A1 (ENSCLAG00000007299) #27 SLC14A2 (ENSCLAG00000012015) #28 SETBP1 (ENSCLAG00000010509) #29 ENSCLAG00000008619 #30 SYT4 (ENSCLAG00000008440) #31 RIT2 (ENSCLAG00000007553) #32 PIK3C3 (ENSCLAG00000014762) #33 CELF4 (ENSCLAG00000008344) #34 KIAA1328 (ENSCLAG00000009322) #35 TPGS2 (ENSCLAG00000008336) #36 FHOD3 (ENSCLAG00000010998) #37 Degu MODERN SPECIES 44 ENSODEG00000018340 ENSODEG00000018367 SKOR2 (ENSODEG00000018363) #12 IER3IP1 (ENSODEG00000018375) #13 HDHD2 (ENSODEG00000018388) #14 KATNAL2 (ENSODEG00000018481) #15 ENSODEG00000018457 ENSODEG00000020536 ENSODEG00000018432 #16 ST8SIA5 (ENSODEG00000018352) #17 ENSODEG00000020498 LOXHD1 (ENSODEG00000018482) #18 RNF165 (ENSODEG00000018412) #19 C18orf25 (ENSODEG00000018458) #20 ENSODEG00000018366 ##21 ATP5F1A (ENSODEG00000018359) #22 ENSODEG00000020534 ENSODEG00000018334 PSTPIP2 (ENSODEG00000018461) #24 EPG5 (ENSODEG00000018404) #25 SIGLEC15 (ENSODEG00000018459) #26 SLC14A1 (ENSODEG00000018379) #27 SLC14A2 (ENSODEG00000018353) #28 SETBP1 (ENSODEG00000018419) #29 SYT4 (ENSODEG00000018346) #31 RIT2 (ENSODEG00000018423) #32 PIK3C3 (ENSODEG00000018465) #33 ENSODEG00000018374 ENSODEG00000018343 CELF4 (ENSODEG00000018464) #34 ENSODEG00000018335 #35 Guinea pig MODERN SPECIES 14 C18orf32 (ENSCPOG00000034745) DYM (ENSCPOG00000013484) #7 SMAD7 (ENSCPOG00000030295) #8 CTIF (ENSCPOG00000001049) #9 ZBTB7C (ENSCPOG00000040464) #10 SMAD2 (ENSCPOG00000013398) #11 SKOR2 (ENSCPOG00000021920) #12 IER3IP1 (ENSCPOG00000040200) #13 HDHD2 (ENSCPOG00000030325) #14 KATNAL2 (ENSCPOG00000008150) #15 ENSCPOG00000003067 #16 ST8SIA5 (ENSCPOG00000030161) #17 LOXHD1 (ENSCPOG00000009824) #18 RNF165 (ENSCPOG00000009298) #19 HAUS1 (ENSCPOG00000012723) #21 ATP5F1A (ENSCPOG00000012719) #22 PSTPIP2 (ENSCPOG00000004876) #24 EPG5 (ENSCPOG00000012114) #25 SLC14A1 (ENSCPOG00000007979) #27 ENSCPOG00000007976 #28 SETBP1 (ENSCPOG00000011164) #29 SYT4 (ENSCPOG00000009941) #31 RIT2 (ENSCPOG00000009357) #32 PIK3C3 (ENSCPOG00000004375) #33 ENSCPOG00000040621 CELF4 (ENSCPOG00000035956) #34 ENSCPOG00000040211 #35 ENSCPOG00000033026 TPGS2 (ENSCPOG00000001354) #36 FHOD3 (ENSCPOG00000001349) #37 MOCOS (ENSCPOG00000012104) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 9 ENSHGLG00000040505 ENSHGLG00000048272 ENSHGLG00000042101 #8 ENSHGLG00000031912 SMAD2 (ENSHGLG00000008711) #11 SKOR2 (ENSHGLG00000035792) #12 ENSHGLG00000048898 #13 HDHD2 (ENSHGLG00000010130) #14 ENSHGLG00000034217 #15 ENSHGLG00000040167 PIAS2 (ENSHGLG00000015588) #16 ST8SIA5 (ENSHGLG00000040367) #17 ENSHGLG00000006211 #18 RNF165 (ENSHGLG00000035767) #19 C18orf25 (ENSHGLG00000041108) #20 ENSHGLG00000036445 #22 ENSHGLG00000036850 ##21 ENSHGLG00000009522 #22 PSTPIP2 (ENSHGLG00000005740) #24 SLC14A1 (ENSHGLG00000007316) #27 ENSHGLG00000005880 #28 ENSHGLG00000046959 #28 ENSHGLG00000033588 ENSHGLG00000040364 #29 ENSHGLG00000001864 ENSHGLG00000041163 ENSHGLG00000043125 ENSHGLG00000002070 ENSHGLG00000039994 ENSHGLG00000048003 ENSHGLG00000048589 #31 Naked mole-rat female MODERN SPECIES 9 ENSHGLG00000042101 #8 ENSHGLG00000031912 SMAD2 (ENSHGLG00000008711) #11 SKOR2 (ENSHGLG00000035792) #12 ENSHGLG00000048898 #13 HDHD2 (ENSHGLG00000010130) #14 ENSHGLG00000034217 #15 ENSHGLG00000040167 PIAS2 (ENSHGLG00000015588) #16 ST8SIA5 (ENSHGLG00000040367) #17 ENSHGLG00000006211 #18 RNF165 (ENSHGLG00000035767) #19 C18orf25 (ENSHGLG00000041108) #20 ENSHGLG00000036445 #22 ENSHGLG00000036850 ##21 ENSHGLG00000009522 #22 PSTPIP2 (ENSHGLG00000005740) #24 SLC14A1 (ENSHGLG00000007316) #27 ENSHGLG00000005880 #28 ENSHGLG00000046959 #28 ENSHGLG00000033588 ENSHGLG00000040364 #29 ENSHGLG00000001864 ENSHGLG00000041163 ENSHGLG00000043125 ENSHGLG00000002070 ENSHGLG00000039994 ENSHGLG00000048003 ENSHGLG00000048589 #31 RIT2 (ENSHGLG00000002499) #32 ENSHGLG00000037189 Sciuridae DUPLICATION Sciuridae ANCESTRAL SPECIES 162 ENSGT00550000074846.y #22 ENSGT00390000000747.g Marmotini ANCESTRAL SPECIES 267 ENSGT00550000074846.y #22 ENSGT00390000000747.g Alpin marmot MODERN SPECIES 335 ENSMMMG00000009521 #22 ENSMMMG00000009530 Sciuridae ANCESTRAL SPECIES 31 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00390000002428.a.g.b ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029 #21 ENSGT00550000074846.z #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Marmotini ANCESTRAL SPECIES 31 ENSGT00940000159872 #8 ENSGT00940000153432.A.b #9 ENSGT00940000159814 #10 ENSGT00940000153499.a #11 ENSGT01030000236530 ENSGT00940000160474 #12 ENSGT00510000047648 #13 ENSGT00940000155805 #14 ENSGT00940000157302 #15 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029 #21 ENSGT00550000074846.z #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Marmotini_b ANCESTRAL SPECIES 137 ENSGT01030000234539.a.a.b.b #16 ENSGT01030000234535.C #17 ENSGT00390000018830 #18 ENSGT00940000156997 #19 ENSGT00390000016167 #20 ENSGT00390000006029 #21 ENSGT00550000074846.z #22 ENSGT00940000158788 #24 ENSGT00390000007354 #25 ENSGT01080000257333.E.o.a #26 ENSGT00390000018729.a.a #27 ENSGT00390000018729.a.b #28 ENSGT00940000158784 #29 ENSGT00940000159026 #31 ENSGT00940000161402 #32 ENSGT00940000156943 #33 ENSGT00940000158673 #34 ENSGT00390000011152 #35 ENSGT00940000164615 ENSGT00390000018344 #36 ENSGT00940000154807.b #37 ENSGT00940000157051 Squirrel MODERN SPECIES 117 PIAS2 (ENSSTOG00000014612) #16 ST8SIA5 (ENSSTOG00000027926) #17 LOXHD1 (ENSSTOG00000023476) #18 RNF165 (ENSSTOG00000023324) #19 C18orf25 (ENSSTOG00000006376) #20 HAUS1 (ENSSTOG00000003708) #21 ATP5F1A (ENSSTOG00000003680) #22 PSTPIP2 (ENSSTOG00000003652) #24 EPG5 (ENSSTOG00000021864) #25 SIGLEC15 (ENSSTOG00000002555) #26 SLC14A1 (ENSSTOG00000002535) #27 SLC14A2 (ENSSTOG00000002511) #28 SETBP1 (ENSSTOG00000002563) #29 SYT4 (ENSSTOG00000009215) #31 RIT2 (ENSSTOG00000027357) #32 PIK3C3 (ENSSTOG00000013565) #33 ENSSTOG00000009698 #34 ENSSTOG00000030096 #35 ENSSTOG00000031930 TPGS2 (ENSSTOG00000011053) #36 FHOD3 (ENSSTOG00000024002) #37 ENSSTOG00000020333 Arctic ground squirrel MODERN SPECIES 622 PIAS2 (ENSUPAG00010010887) #16 ST8SIA5 (ENSUPAG00010010865) #17 LOXHD1 (ENSUPAG00010010785) #18 ENSUPAG00010010781 #19 ENSUPAG00010010778 C18orf25 (ENSUPAG00010010766) #20 ENSUPAG00010010762 ENSUPAG00010010754 #21 ATP5F1A (ENSUPAG00010010740) #22 Alpin marmot MODERN SPECIES 10 C18orf32 (ENSMMMG00000006157) DYM (ENSMMMG00000006170) #7 SMAD7 (ENSMMMG00000006202) #8 CTIF (ENSMMMG00000006232) #9 ZBTB7C (ENSMMMG00000006278) #10 SMAD2 (ENSMMMG00000006290) #11 ENSMMMG00000006338 HDHD2 (ENSMMMG00000006342) #14 KATNAL2 (ENSMMMG00000006351) #15 PIAS2 (ENSMMMG00000006515) #16 ST8SIA5 (ENSMMMG00000006633) #17 LOXHD1 (ENSMMMG00000006669) #18 RNF165 (ENSMMMG00000006757) #19 C18orf25 (ENSMMMG00000006777) #20 HAUS1 (ENSMMMG00000006810) #21 ATP5F1A (ENSMMMG00000006823) #22 PSTPIP2 (ENSMMMG00000006839) #24 EPG5 (ENSMMMG00000006854) #25 SIGLEC15 (ENSMMMG00000006905) #26 SLC14A1 (ENSMMMG00000006914) #27 SLC14A2 (ENSMMMG00000006939) #28 SETBP1 (ENSMMMG00000006996) #29 SYT4 (ENSMMMG00000007022) #31 RIT2 (ENSMMMG00000007046) #32 ENSMMMG00000007059 PIK3C3 (ENSMMMG00000007071) #33 CELF4 (ENSMMMG00000007204) #34 KIAA1328 (ENSMMMG00000007270) #35 TPGS2 (ENSMMMG00000007348) #36 FHOD3 (ENSMMMG00000007376) #37 ENSMMMG00000007438 Eurasian red squirrel MODERN SPECIES 4 SMAD7 (ENSSVLG00005019787) #8 CTIF (ENSSVLG00005019619) #9 ZBTB7C (ENSSVLG00005019433) #10 ENSSVLG00005019379 #11 SKOR2 (ENSSVLG00005019180) #12 ENSSVLG00005019150 #13 HDHD2 (ENSSVLG00005019073) #14 ENSSVLG00005019019 KATNAL2 (ENSSVLG00005018737) #15 ENSSVLG00005018588 #16 ST8SIA5 (ENSSVLG00005018346) #17 LOXHD1 (ENSSVLG00005016724) #18 RNF165 (ENSSVLG00005016476) #19 C18orf25 (ENSSVLG00005016394) #20 HAUS1 (ENSSVLG00005016339) #21 ATP5F1A (ENSSVLG00005016277) #22 ENSSVLG00005016239 PSTPIP2 (ENSSVLG00005016011) #24 EPG5 (ENSSVLG00005015968) #25 SIGLEC15 (ENSSVLG00005015863) #26 SLC14A1 (ENSSVLG00005015590) #27 ENSSVLG00005015418 #28 SETBP1 (ENSSVLG00005015356) #29 ENSSVLG00005015263 SYT4 (ENSSVLG00005021147) #31 RIT2 (ENSSVLG00005020975) #32 ENSSVLG00005020916 PIK3C3 (ENSSVLG00005020640) #33 CELF4 (ENSSVLG00005019912) #34 KIAA1328 (ENSSVLG00005019689) #35 TPGS2 (ENSSVLG00005019531) #36