Amniota	ANCESTRAL SPECIES	33	ENSGT00390000008255	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a
Mammalia	ANCESTRAL SPECIES	27	ENSGT00390000011296	ENSGT00390000008255	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000156590	ENSGT00940000156981	ENSGT00940000162006	ENSGT00940000155715	ENSGT00940000158584
Theria	ANCESTRAL SPECIES	56					ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00390000017260	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00930000150969.A.c.b.b	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877
Eutheria	ANCESTRAL SPECIES	2	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Glires	ANCESTRAL SPECIES	13	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Rodentia	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.z ##31	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447.y.a #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171
Myomorpha	ANCESTRAL SPECIES	37	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007
Muroidea	ANCESTRAL SPECIES	38	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000162300	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j
Mus	ANCESTRAL SPECIES	12	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00950000184960 #29	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705
Mus_C	ANCESTRAL SPECIES	18	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00950000184960 #29	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705
Steppe mouse	MODERN SPECIES	3332																Hk2 (ENSMSIG00000021677) #22	Pole4 (ENSMSIG00000021737) #23	Tacr1 (ENSMSIG00000021757) #24	Eva1a (ENSMSIG00000021770) #25	Mrpl19 (ENSMSIG00000021780) #26	Gcfc2 (ENSMSIG00000021791) #27	Lrrtm4 (ENSMSIG00000021825) #28	Gm20594 (ENSMSIG00000021837) #29	ENSMSIG00000021840 #30	ENSMSIG00000021860 #31
spretus	MODERN SPECIES	15	Wbp1 (MGP_SPRETEiJ_G0029552)	Mogs (MGP_SPRETEiJ_G0029551)	Mrpl53 (MGP_SPRETEiJ_G0029550)	MGP_SPRETEiJ_G0029549	MGP_SPRETEiJ_G0029548	Lbx2 (MGP_SPRETEiJ_G0029547)	Pcgf1 (MGP_SPRETEiJ_G0029546)	Tlx2 (MGP_SPRETEiJ_G0029545)	MGP_SPRETEiJ_G0029544	Aup1 (MGP_SPRETEiJ_G0029543)	Htra2 (MGP_SPRETEiJ_G0029542)	Loxl3 (MGP_SPRETEiJ_G0029541)	Dok1 (MGP_SPRETEiJ_G0029540)	M1ap (MGP_SPRETEiJ_G0029539)	Sema4f (MGP_SPRETEiJ_G0029538)	Hk2 (MGP_SPRETEiJ_G0029537) #22	Pole4 (MGP_SPRETEiJ_G0029536) #23	Tacr1 (MGP_SPRETEiJ_G0029535) #24	Eva1a (MGP_SPRETEiJ_G0029534) #25	Mrpl19 (MGP_SPRETEiJ_G0029533) #26	Gcfc2 (MGP_SPRETEiJ_G0029532) #27	Lrrtm4 (MGP_SPRETEiJ_G0029531) #28	Gm20594 (MGP_SPRETEiJ_G0029530) #29	Reg3g (MGP_SPRETEiJ_G0029529) #31	Reg1 (MGP_SPRETEiJ_G0029528)	Reg2 (MGP_SPRETEiJ_G0029527)	Reg3a (MGP_SPRETEiJ_G0029526) ##31	Reg3d (MGP_SPRETEiJ_G0029525) ##31	Reg3b (MGP_SPRETEiJ_G0029524) ##31	Lrrtm1 (MGP_SPRETEiJ_G0029523)	Ctnna2 (MGP_SPRETEiJ_G0029522)
Mouse	MODERN SPECIES	15	Ino80b (ENSMUSG00000030034)	Wbp1 (ENSMUSG00000030035)	Mogs (ENSMUSG00000030036)	Mrpl53 (ENSMUSG00000030037)	Ccdc142 (ENSMUSG00000107499)	Lbx2 (ENSMUSG00000034968)	Pcgf1 (ENSMUSG00000069678)	Tlx2 (ENSMUSG00000068327)	Dqx1 (ENSMUSG00000009145)	Aup1 (ENSMUSG00000068328)	Htra2 (ENSMUSG00000068329)	Loxl3 (ENSMUSG00000000693)	Dok1 (ENSMUSG00000068335)	M1ap (ENSMUSG00000030041)	Sema4f (ENSMUSG00000000627)	Hk2 (ENSMUSG00000000628) #22	Pole4 (ENSMUSG00000030042) #23	Tacr1 (ENSMUSG00000030043) #24	Eva1a (ENSMUSG00000035104) #25	Mrpl19 (ENSMUSG00000030045) #26	Gcfc2 (ENSMUSG00000035125) #27	Lrrtm4 (ENSMUSG00000052581) #28	Gm20594 (ENSMUSG00000096887) #29	Reg3g (ENSMUSG00000030017) #31	Reg1 (ENSMUSG00000059654)	Reg2 (ENSMUSG00000023140)	Reg3a (ENSMUSG00000079516) ##31	Reg3d (ENSMUSG00000068341) ##31	Reg3b (ENSMUSG00000071356) ##31	Lrrtm1 (ENSMUSG00000060780)	Ctnna2 (ENSMUSG00000063063)
Ryukyu mouse	MODERN SPECIES	15	Wbp1 (MGP_CAROLIEiJ_G0028546)	Mogs (MGP_CAROLIEiJ_G0028545)	Mrpl53 (MGP_CAROLIEiJ_G0028544)	MGP_CAROLIEiJ_G0028543	MGP_CAROLIEiJ_G0028542	Lbx2 (MGP_CAROLIEiJ_G0028541)	Pcgf1 (MGP_CAROLIEiJ_G0028540)	Tlx2 (MGP_CAROLIEiJ_G0028539)	MGP_CAROLIEiJ_G0028538	Aup1 (MGP_CAROLIEiJ_G0028537)	Htra2 (MGP_CAROLIEiJ_G0028536)	Loxl3 (MGP_CAROLIEiJ_G0028535)	Dok1 (MGP_CAROLIEiJ_G0028534)	M1ap (MGP_CAROLIEiJ_G0028533)	Sema4f (MGP_CAROLIEiJ_G0028532)	Hk2 (MGP_CAROLIEiJ_G0028531) #22	Pole4 (MGP_CAROLIEiJ_G0028530) #23	Tacr1 (MGP_CAROLIEiJ_G0028529) #24	Eva1a (MGP_CAROLIEiJ_G0028528) #25	Mrpl19 (MGP_CAROLIEiJ_G0028527) #26	Gcfc2 (MGP_CAROLIEiJ_G0028526) #27	Lrrtm4 (MGP_CAROLIEiJ_G0028525) #28	Reg3g (MGP_CAROLIEiJ_G0028524) #31	Reg1 (MGP_CAROLIEiJ_G0028523)	Reg2 (MGP_CAROLIEiJ_G0028522)	Reg3a (MGP_CAROLIEiJ_G0028521) ##31	Reg3d (MGP_CAROLIEiJ_G0028520) ##31	Reg3b (MGP_CAROLIEiJ_G0028519) ##31	Lrrtm1 (MGP_CAROLIEiJ_G0028518)	Ctnna2 (MGP_CAROLIEiJ_G0028517)	Jkampl (MGP_CAROLIEiJ_G0028516)
Shrew mouse	MODERN SPECIES	11	Wbp1 (MGP_PahariEiJ_G0022281)	Mogs (MGP_PahariEiJ_G0022280)	Mrpl53 (MGP_PahariEiJ_G0022279)	MGP_PahariEiJ_G0022278	MGP_PahariEiJ_G0022277	Lbx2 (MGP_PahariEiJ_G0022276)	Pcgf1 (MGP_PahariEiJ_G0022275)	Tlx2 (MGP_PahariEiJ_G0022274)	Dqx1 (MGP_PahariEiJ_G0022273)	Aup1 (MGP_PahariEiJ_G0022272)	Htra2 (MGP_PahariEiJ_G0022271)	Loxl3 (MGP_PahariEiJ_G0022270)	Dok1 (MGP_PahariEiJ_G0022269)	M1ap (MGP_PahariEiJ_G0022268)	Sema4f (MGP_PahariEiJ_G0022267)	Hk2 (MGP_PahariEiJ_G0022266) #22	Pole4 (MGP_PahariEiJ_G0022265) #23	Tacr1 (MGP_PahariEiJ_G0022264) #24	Eva1a (MGP_PahariEiJ_G0022263) #25	Mrpl19 (MGP_PahariEiJ_G0022262) #26	Gcfc2 (MGP_PahariEiJ_G0022261) #27	Lrrtm4 (MGP_PahariEiJ_G0022260) #28	Reg3g (MGP_PahariEiJ_G0022259) #31	Reg1 (MGP_PahariEiJ_G0022258)	Reg2 (MGP_PahariEiJ_G0022257)	Reg3a (MGP_PahariEiJ_G0022256) ##31	MGP_PahariEiJ_G0022255	Reg3b (MGP_PahariEiJ_G0022254) ##31	Lrrtm1 (MGP_PahariEiJ_G0022253)	Ctnna2 (MGP_PahariEiJ_G0022252)	Jkampl (MGP_PahariEiJ_G0022251)
Rat	MODERN SPECIES	14	Rtkn (ENSRNOG00000009022)	Ino80b (ENSRNOG00000008873)	Wbp1 (ENSRNOG00000008720)	Mogs (ENSRNOG00000054176)	Ccdc142 (ENSRNOG00000058785)	Lbx2 (ENSRNOG00000008466)	Pcgf1 (ENSRNOG00000051433)	Tlx2 (ENSRNOG00000055188)	Dqx1 (ENSRNOG00000008062)	Aup1 (ENSRNOG00000007842)	Htra2 (ENSRNOG00000022448)	Loxl3 (ENSRNOG00000061373)	Dok1 (ENSRNOG00000007412)	M1ap (ENSRNOG00000007288)	Sema4f (ENSRNOG00000006784)	Hk2 (ENSRNOG00000006116) #22	Pole4 (ENSRNOG00000006102) #23	Tacr1 (ENSRNOG00000005853) #24	ENSRNOG00000063971	Eva1a (ENSRNOG00000007118) #25	Mrpl19 (ENSRNOG00000006968) #26	Gcfc2 (ENSRNOG00000006888) #27	AABR07061254.1 (ENSRNOG00000038024)	ENSRNOG00000064641	Lrrtm4 (ENSRNOG00000021938) #28	Reg3g (ENSRNOG00000006579) #31	Reg1a (ENSRNOG00000006486)	Reg3a (ENSRNOG00000006360) ##31	Reg3b (ENSRNOG00000006151) ##31	LRRTM1 (ENSRNOG00000006093)	Ctnna2 (ENSRNOG00000006003)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000162300	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.b	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00390000018097.j	ENSGT00940000156351
Prairie vole	MODERN SPECIES	83	Ino80b (ENSMOCG00000020754)	Wbp1 (ENSMOCG00000005967)	Mogs (ENSMOCG00000000117)	Mrpl53 (ENSMOCG00000015167)	Ccdc142 (ENSMOCG00000015304)	Lbx2 (ENSMOCG00000002385)	Pcgf1 (ENSMOCG00000001359)	Tlx2 (ENSMOCG00000011667)	Dqx1 (ENSMOCG00000017871)	Aup1 (ENSMOCG00000021809)	Htra2 (ENSMOCG00000003555)	Loxl3 (ENSMOCG00000011718)	Dok1 (ENSMOCG00000021462)	M1ap (ENSMOCG00000009481)	Sema4f (ENSMOCG00000014077)	Hk2 (ENSMOCG00000019865) #22	Pole4 (ENSMOCG00000016768) #23	Tacr1 (ENSMOCG00000006018) #24	Eva1a (ENSMOCG00000012884) #25	ENSMOCG00000018596 #26	Gcfc2 (ENSMOCG00000017779) #27	ENSMOCG00000000151	Lrrtm4 (ENSMOCG00000008317) #28	ENSMOCG00000015470	ENSMOCG00000003469	Reg3g (ENSMOCG00000000838) #31	Reg2 (ENSMOCG00000019434)	Reg3b (ENSMOCG00000000127) ##31	ENSMOCG00000019395	Lrrtm1 (ENSMOCG00000015921)	ENSMOCG00000016382
Northern American deer mouse	MODERN SPECIES	16	Ino80b (ENSPEMG00000006161)	Wbp1 (ENSPEMG00000010594)	Mogs (ENSPEMG00000008417)	Mrpl53 (ENSPEMG00000008725)	Ccdc142 (ENSPEMG00000014703)	Lbx2 (ENSPEMG00000011990)	Pcgf1 (ENSPEMG00000017121)	Tlx2 (ENSPEMG00000010782)	Dqx1 (ENSPEMG00000000695)	Aup1 (ENSPEMG00000008201)	Htra2 (ENSPEMG00000015428)	Loxl3 (ENSPEMG00000015153)	Dok1 (ENSPEMG00000010752)	M1ap (ENSPEMG00000011948)	Sema4f (ENSPEMG00000008768)	Hk2 (ENSPEMG00000022631) #22	Pole4 (ENSPEMG00000028015) #23	Tacr1 (ENSPEMG00000023294) #24	Eva1a (ENSPEMG00000026422) #25	Mrpl19 (ENSPEMG00000024632) #26	Gcfc2 (ENSPEMG00000005238) #27	ENSPEMG00000030656	Lrrtm4 (ENSPEMG00000019651) #28	ENSPEMG00000001831	Reg3g (ENSPEMG00000019588) #31	ENSPEMG00000011894	Reg3a (ENSPEMG00000000477) ##31	ENSPEMG00000014440 ##31	Reg3b (ENSPEMG00000009322) ##31	Lrrtm1 (ENSPEMG00000019466)	ENSPEMG00000024773
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.y.a.a #31	ENSGT00940000162393.a	ENSGT00940000162393.b	ENSGT00940000162300	ENSGT00940000154447.y.b.b ##31	ENSGT00940000154447.y.b.a ##31	ENSGT00940000154447.y.a.b ##31	ENSGT01030000234543.A.a	ENSGT00390000018097.j
Chinese hamster chok1gshd	MODERN SPECIES	242	Wbp1 (ENSCGRG00001009466)	Mrpl53 (ENSCGRG00001012557)	Ccdc142 (ENSCGRG00001020073)	Lbx2 (ENSCGRG00001000433)	Pcgf1 (ENSCGRG00001002493)	Tlx2 (ENSCGRG00001008627)	Dqx1 (ENSCGRG00001011093)	Aup1 (ENSCGRG00001013091)	Htra2 (ENSCGRG00001000338)	Loxl3 (ENSCGRG00001010598)	Dok1 (ENSCGRG00001006719)	M1ap (ENSCGRG00001011175)	ENSCGRG00001015764	Sema4f (ENSCGRG00001016218)	ENSCGRG00001020271	Hk2 (ENSCGRG00001002061) #22	Pole4 (ENSCGRG00001013295) #23	Tacr1 (ENSCGRG00001015125) #24	ENSCGRG00001019682	Eva1a (ENSCGRG00001001093) #25	Mrpl19 (ENSCGRG00001002468) #26	Gcfc2 (ENSCGRG00001004931) #27	ENSCGRG00001015827	Lrrtm4 (ENSCGRG00001012847) #28	ENSCGRG00001014116	ENSCGRG00001015880	ENSCGRG00001016319	Reg3g (ENSCGRG00001014964) #31	Reg1 (ENSCGRG00001015288)	Reg2 (ENSCGRG00001016071)	ENSCGRG00001016649
Golden Hamster	MODERN SPECIES	698	Wbp1 (ENSMAUG00000022150)	Mogs (ENSMAUG00000021939)	Mrpl53 (ENSMAUG00000010618)	Ccdc142 (ENSMAUG00000017920)	Lbx2 (ENSMAUG00000001333)	Pcgf1 (ENSMAUG00000019230)	Tlx2 (ENSMAUG00000018780)	Dqx1 (ENSMAUG00000022113)	Aup1 (ENSMAUG00000012161)	Htra2 (ENSMAUG00000012010)	Loxl3 (ENSMAUG00000001931)	Dok1 (ENSMAUG00000022023)	M1ap (ENSMAUG00000010825)	Sema4f (ENSMAUG00000009786)	ENSMAUG00000010231	Hk2 (ENSMAUG00000020920) #22	Pole4 (ENSMAUG00000002015) #23	Tacr1 (ENSMAUG00000016810) #24	Eva1a (ENSMAUG00000013107) #25	Mrpl19 (ENSMAUG00000011327) #26	Gcfc2 (ENSMAUG00000021915) #27	Lrrtm4 (ENSMAUG00000021688) #28	ENSMAUG00000020837	Reg3gamma (ENSMAUG00000013518) #31	Reg2 (ENSMAUG00000000796)	ENSMAUG00000009913 ##31	Reg3d (ENSMAUG00000001387) ##31	Reg3b (ENSMAUG00000004298) ##31	ENSMAUG00000015429	Lrrtm1 (ENSMAUG00000020167)	ENSMAUG00000011430
Upper Galilee mountains blind mole rat	MODERN SPECIES	1871	Ino80b (ENSNGAG00000001416)	Wbp1 (ENSNGAG00000016758)	Mogs (ENSNGAG00000018314)	Mrpl53 (ENSNGAG00000001052)	Ccdc142 (ENSNGAG00000017389)	Lbx2 (ENSNGAG00000004590)	Pcgf1 (ENSNGAG00000023164)	Tlx2 (ENSNGAG00000022815)	Dqx1 (ENSNGAG00000022609)	Aup1 (ENSNGAG00000021192)	Htra2 (ENSNGAG00000020588)	ENSNGAG00000007181	Dok1 (ENSNGAG00000004316)	M1ap (ENSNGAG00000024114)	Sema4f (ENSNGAG00000022767)	Hk2 (ENSNGAG00000013722) #22	Egr4 (ENSNGAG00000002193)	Fbxo41 (ENSNGAG00000019168)	Cct7 (ENSNGAG00000018805)	Pradc1 (ENSNGAG00000022973)	Smyd5 (ENSNGAG00000011517)	Noto (ENSNGAG00000005430)	Rab11fip5 (ENSNGAG00000015746)	Sfxn5 (ENSNGAG00000022575)	Emx1 (ENSNGAG00000019661)	ENSNGAG00000019431	ENSNGAG00000022373	ENSNGAG00000012614	Exoc6b (ENSNGAG00000022129)	Cyp26b1 (ENSNGAG00000012506)	Dysf (ENSNGAG00000021698)
Lesser Egyptian jerboa	MODERN SPECIES	77					Jph1 (ENSJJAG00000014118)	Gdap1 (ENSJJAG00000014819)	ENSJJAG00000008907	Pi15 (ENSJJAG00000017870)	ENSJJAG00000016188	Hnf4g (ENSJJAG00000024184)	Zfhx4 (ENSJJAG00000022978)	Pex2 (ENSJJAG00000006470)	Pkia (ENSJJAG00000021457)	Zc2hc1a (ENSJJAG00000015487)	Il7 (ENSJJAG00000020747)	Hk2 (ENSJJAG00000023582) #22	Tacr1 (ENSJJAG00000009094) #24	Eva1a (ENSJJAG00000000520) #25	Mrpl19 (ENSJJAG00000011449) #26	Gcfc2 (ENSJJAG00000020797) #27	ENSJJAG00000021250	ENSJJAG00000016811	Lrrtm4 (ENSJJAG00000014862) #28	ENSJJAG00000004619	ENSJJAG00000024137 ##31	ENSJJAG00000004867 ##31	ENSJJAG00000023603	ENSJJAG00000020877	Lrrtm1 (ENSJJAG00000021646)	Ctnna2 (ENSJJAG00000020758)	ENSJJAG00000014736
Kangaroo rat	MODERN SPECIES	509	Ino80b (ENSDORG00000016185)	Wbp1 (ENSDORG00000019752)	Mogs (ENSDORG00000016186)	ENSDORG00000016187	Ccdc142 (ENSDORG00000025374)	Lbx2 (ENSDORG00000010863)	Pcgf1 (ENSDORG00000010860)	Tlx2 (ENSDORG00000010859)	Dqx1 (ENSDORG00000013672)	Aup1 (ENSDORG00000013678)	Htra2 (ENSDORG00000013684)	Loxl3 (ENSDORG00000013687)	Dok1 (ENSDORG00000013690)	M1ap (ENSDORG00000013692)	Sema4f (ENSDORG00000014340)	Hk2 (ENSDORG00000006463) #22	Pole4 (ENSDORG00000010725) #23	Tacr1 (ENSDORG00000006212) #24	Eva1a (ENSDORG00000023980) #25	Mrpl19 (ENSDORG00000007011) #26	Gcfc2 (ENSDORG00000007015) #27	ENSDORG00000023277	Lrrtm4 (ENSDORG00000024289) #28
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447.z ##31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110.f	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000162393	ENSGT00940000154447.z ##31	ENSGT00940000154447.y.a #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00510000047171.m.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	5	MOGS (ENSSVLG00005024731)	MRPL53 (ENSSVLG00005024756)	CCDC142 (ENSSVLG00005024776)	TTC31 (ENSSVLG00005024821)	LBX2 (ENSSVLG00005024879)	PCGF1 (ENSSVLG00005024907)	TLX2 (ENSSVLG00005024935)	DQX1 (ENSSVLG00005024974)	AUP1 (ENSSVLG00005024996)	HTRA2 (ENSSVLG00005025033)	LOXL3 (ENSSVLG00005025127)	DOK1 (ENSSVLG00005015837)	M1AP (ENSSVLG00005015919)	SEMA4F (ENSSVLG00005016158)	ENSSVLG00005016309	ENSSVLG00005016338 #22	ENSSVLG00005016623	ENSSVLG00005016659	POLE4 (ENSSVLG00005016692) #23	TACR1 (ENSSVLG00005016729) #24	ENSSVLG00005016813	EVA1A (ENSSVLG00005016866) #25	MRPL19 (ENSSVLG00005016907) #26	GCFC2 (ENSSVLG00005017041) #27	ENSSVLG00005017247	ENSSVLG00005017312	LRRTM4 (ENSSVLG00005017369) #28	ENSSVLG00005017508	REG1A (ENSSVLG00005017633)	ENSSVLG00005017714 ##31	ENSSVLG00005017804 ##31
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005007350	ENSSVLG00005007323	FRMD6 (ENSSVLG00005007280)	ENSSVLG00005007247	RTRAF (ENSSVLG00005007221)	NID2 (ENSSVLG00005007195)	PTGDR (ENSSVLG00005007172)	ENSSVLG00005007151	PTGER2 (ENSSVLG00005007122)	TXNDC16 (ENSSVLG00005007046)	GPR137C (ENSSVLG00005006997)	ERO1A (ENSSVLG00005006953)	PSMC6 (ENSSVLG00005006842)	STYX (ENSSVLG00005006759)	GNPNAT1 (ENSSVLG00005006714)	ENSSVLG00005006693 #22	FERMT2 (ENSSVLG00005006620)	ENSSVLG00005006589	DDHD1 (ENSSVLG00005006359)	ENSSVLG00005006333	ENSSVLG00005006320	CDKN3 (ENSSVLG00005006189)	CNIH1 (ENSSVLG00005006051)	ENSSVLG00005005962	ENSSVLG00005005906	SAMD4A (ENSSVLG00005005855)	ENSSVLG00005005811	ENSSVLG00005004501	WDHD1 (ENSSVLG00005004416)	SOCS4 (ENSSVLG00005004401)	ENSSVLG00005004383
Marmotini	ANCESTRAL SPECIES	79	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110.f	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162393	ENSGT00940000154447.z ##31	ENSGT00940000154447.y.a #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00510000047171.m.b	ENSGT00940000163007
Marmotini_b	ANCESTRAL SPECIES	130	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110.f	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162393	ENSGT00940000154447.y.a #31	ENSGT01030000234543.A.a	ENSGT00940000161705
Arctic ground squirrel	MODERN SPECIES	185	WBP1 (ENSUPAG00010016718)	MOGS (ENSUPAG00010016709)	MRPL53 (ENSUPAG00010016700)	CCDC142 (ENSUPAG00010016686)	TTC31 (ENSUPAG00010016656)	LBX2 (ENSUPAG00010016649)	PCGF1 (ENSUPAG00010016615)	TLX2 (ENSUPAG00010016603)	DQX1 (ENSUPAG00010016586)	AUP1 (ENSUPAG00010016560)	HTRA2 (ENSUPAG00010016515)	LOXL3 (ENSUPAG00010016491)	DOK1 (ENSUPAG00010016478)	M1AP (ENSUPAG00010016450)	SEMA4F (ENSUPAG00010016418)	HK2 (ENSUPAG00010016363) #22	POLE4 (ENSUPAG00010016344) #23	TACR1 (ENSUPAG00010016322) #24	ENSUPAG00010016313	EVA1A (ENSUPAG00010016304) #25	ENSUPAG00010016294 #26	GCFC2 (ENSUPAG00010016015) #27	ENSUPAG00010016007	LRRTM4 (ENSUPAG00010015987) #28
Squirrel	MODERN SPECIES	156	WBP1 (ENSSTOG00000025943)	MOGS (ENSSTOG00000026661)	MRPL53 (ENSSTOG00000001025)	CCDC142 (ENSSTOG00000001028)	TTC31 (ENSSTOG00000001033)	LBX2 (ENSSTOG00000019987)	PCGF1 (ENSSTOG00000001040)	TLX2 (ENSSTOG00000001045)	DQX1 (ENSSTOG00000026252)	AUP1 (ENSSTOG00000001051)	HTRA2 (ENSSTOG00000001063)	LOXL3 (ENSSTOG00000001072)	DOK1 (ENSSTOG00000001076)	M1AP (ENSSTOG00000001080)	SEMA4F (ENSSTOG00000001082)	HK2 (ENSSTOG00000002437) #22	POLE4 (ENSSTOG00000030120) #23	TACR1 (ENSSTOG00000011077) #24	EVA1A (ENSSTOG00000021469) #25	MRPL19 (ENSSTOG00000002873) #26	GCFC2 (ENSSTOG00000024464) #27	ENSSTOG00000024435	LRRTM4 (ENSSTOG00000001717) #28	REG1A (ENSSTOG00000003573)	ENSSTOG00000001662 #31	ENSSTOG00000021505	LRRTM1 (ENSSTOG00000028545)	ENSSTOG00000026194
Alpin marmot	MODERN SPECIES	64	WBP1 (ENSMMMG00000004707)	MOGS (ENSMMMG00000004720)	ENSMMMG00000004733	CCDC142 (ENSMMMG00000004738)	ENSMMMG00000004752	LBX2 (ENSMMMG00000004780)	PCGF1 (ENSMMMG00000004790)	TLX2 (ENSMMMG00000004825)	DQX1 (ENSMMMG00000004834)	AUP1 (ENSMMMG00000004858)	HTRA2 (ENSMMMG00000004896)	LOXL3 (ENSMMMG00000004988)	DOK1 (ENSMMMG00000005037)	M1AP (ENSMMMG00000005048)	SEMA4F (ENSMMMG00000005082)	HK2 (ENSMMMG00000005126) #22	POLE4 (ENSMMMG00000005188) #23	TACR1 (ENSMMMG00000005201) #24	EVA1A (ENSMMMG00000005216) #25	MRPL19 (ENSMMMG00000005228) #26	GCFC2 (ENSMMMG00000005247) #27	LRRTM4 (ENSMMMG00000005273) #28	ENSMMMG00000005287 ##31	REG1A (ENSMMMG00000005302)	ENSMMMG00000005338 ##31	ENSMMMG00000005359 #31	CTNNA2 (ENSMMMG00000005377)	LRRTM1 (ENSMMMG00000005631)	ENSMMMG00000005652	ENSMMMG00000005682	ENSMMMG00000005696
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.z.e.b ##31	ENSGT00940000154447.z.e.a ##31	ENSGT00940000154447.z.f ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.z.e.b ##31	ENSGT00940000154447.z.e.a ##31	ENSGT00940000154447.z.f ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n
Guinea pig	MODERN SPECIES	37	WBP1 (ENSCPOG00000037016)	MOGS (ENSCPOG00000026010)	MRPL53 (ENSCPOG00000035123)	CCDC142 (ENSCPOG00000023486)	TTC31 (ENSCPOG00000024373)	LBX2 (ENSCPOG00000012727)	PCGF1 (ENSCPOG00000012729)	TLX2 (ENSCPOG00000019512)	DQX1 (ENSCPOG00000022849)	AUP1 (ENSCPOG00000025054)	HTRA2 (ENSCPOG00000012732)	LOXL3 (ENSCPOG00000023961)	DOK1 (ENSCPOG00000038650)	M1AP (ENSCPOG00000008912)	SEMA4F (ENSCPOG00000005867)	HK2 (ENSCPOG00000009174) #22	POLE4 (ENSCPOG00000036220) #23	TACR1 (ENSCPOG00000036008) #24	EVA1A (ENSCPOG00000031202) #25	MRPL19 (ENSCPOG00000024548) #26	GCFC2 (ENSCPOG00000002225) #27	LRRTM4 (ENSCPOG00000012033) #28	ENSCPOG00000020711 ##31	ENSCPOG00000014439 ##31	ENSCPOG00000004885 ##31	ENSCPOG00000032214	LRRTM1 (ENSCPOG00000001371)	CTNNA2 (ENSCPOG00000023564)	SUCLG1 (ENSCPOG00000003017)	DNAH6 (ENSCPOG00000015041)	KCMF1 (ENSCPOG00000023050)
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.z.e.b ##31	ENSGT00940000154447.z.e.a ##31	ENSGT00940000154447.z.f ##31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171.n
Degu	MODERN SPECIES	99	INO80B (ENSODEG00000011186)	WBP1 (ENSODEG00000011560)	MOGS (ENSODEG00000014368)	CCDC142 (ENSODEG00000014496)	LBX2 (ENSODEG00000011284)	PCGF1 (ENSODEG00000011844)	TLX2 (ENSODEG00000012439)	DQX1 (ENSODEG00000012521)	AUP1 (ENSODEG00000011987)	HTRA2 (ENSODEG00000011661)	LOXL3 (ENSODEG00000011550)	DOK1 (ENSODEG00000011592)	M1AP (ENSODEG00000012536)	SEMA4F (ENSODEG00000010194)	ENSODEG00000019770	HK2 (ENSODEG00000011759) #22	POLE4 (ENSODEG00000010898) #23	TACR1 (ENSODEG00000013525) #24	EVA1A (ENSODEG00000011258) #25	MRPL19 (ENSODEG00000011430) #26	GCFC2 (ENSODEG00000010845) #27	ENSODEG00000011878	LRRTM4 (ENSODEG00000012374) #28	ENSODEG00000012041 ##31	ENSODEG00000011079 ##31	ENSODEG00000011827 ##31	CTNNA2 (ENSODEG00000014222)	LRRTM1 (ENSODEG00000011057)
Long-tailed chinchilla	MODERN SPECIES	131	MRPL53 (ENSCLAG00000005239)	CCDC142 (ENSCLAG00000014185)	TTC31 (ENSCLAG00000014144)	MOGS (ENSCLAG00000013829)	LBX2 (ENSCLAG00000014921)	PCGF1 (ENSCLAG00000005785)	TLX2 (ENSCLAG00000004657)	DQX1 (ENSCLAG00000007521)	AUP1 (ENSCLAG00000006421)	HTRA2 (ENSCLAG00000007086)	LOXL3 (ENSCLAG00000006711)	DOK1 (ENSCLAG00000006260)	M1AP (ENSCLAG00000005763)	SEMA4F (ENSCLAG00000005573)	ENSCLAG00000006297	HK2 (ENSCLAG00000005143) #22	POLE4 (ENSCLAG00000004786) #23	TACR1 (ENSCLAG00000004754) #24	EVA1A (ENSCLAG00000004417) #25	MRPL19 (ENSCLAG00000016582) #26	GCFC2 (ENSCLAG00000012347) #27	LRRTM4 (ENSCLAG00000007091) #28	ENSCLAG00000006062	ENSCLAG00000005804 ##31	ENSCLAG00000006327 ##31	ENSCLAG00000005858 ##31	LRRTM1 (ENSCLAG00000005364)	CTNNA2 (ENSCLAG00000013755)	ENSCLAG00000009325	SUCLG1 (ENSCLAG00000008580)	DNAH6 (ENSCLAG00000006035)
Naked mole-rat female	MODERN SPECIES	23	MRPL53 (ENSHGLG00000040604)	CCDC142 (ENSHGLG00000008633)	ENSHGLG00000033871	ENSHGLG00000036953	LBX2 (ENSHGLG00000047185)	PCGF1 (ENSHGLG00000033144)	TLX2 (ENSHGLG00000005792)	DQX1 (ENSHGLG00000011994)	AUP1 (ENSHGLG00000013187)	HTRA2 (ENSHGLG00000009744)	LOXL3 (ENSHGLG00000006170)	DOK1 (ENSHGLG00000005074)	M1AP (ENSHGLG00000004860)	SEMA4F (ENSHGLG00000009042)	ENSHGLG00000035045	HK2 (ENSHGLG00000005907) #22	POLE4 (ENSHGLG00000047239) #23	TACR1 (ENSHGLG00000045416) #24	EVA1A (ENSHGLG00000040877) #25	MRPL19 (ENSHGLG00000042011) #26	GCFC2 (ENSHGLG00000008801) #27	ENSHGLG00000015398 #28	ENSHGLG00000015346	ENSHGLG00000034056	ENSHGLG00000038719	ENSHGLG00000034955	ENSHGLG00000008716	ENSHGLG00000047665	ENSHGLG00000034192 ##31	ENSHGLG00000008059 ##31	ENSHGLG00000007734 ##31
Lagomorpha	ANCESTRAL SPECIES	47	ENSGT00940000167728	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154447.`b #31	ENSGT00940000162393	ENSGT00940000154447.ab #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Rabbit	MODERN SPECIES	11	ENSOCUG00000039031	WBP1 (ENSOCUG00000015323)	ENSOCUG00000015328	ENSOCUG00000015342	CCDC142 (ENSOCUG00000015350)	LBX2 (ENSOCUG00000025427)	PCGF1 (ENSOCUG00000015358)	TLX2 (ENSOCUG00000015369)	DQX1 (ENSOCUG00000015372)	AUP1 (ENSOCUG00000015388)	HTRA2 (ENSOCUG00000015403)	LOXL3 (ENSOCUG00000027040)	DOK1 (ENSOCUG00000004656)	M1AP (ENSOCUG00000004664)	SEMA4F (ENSOCUG00000004668)	HK2 (ENSOCUG00000000197) #22	ENSOCUG00000031334	ENSOCUG00000022792	TACR1 (ENSOCUG00000001006) #24	EVA1A (ENSOCUG00000011295) #25	MRPL19 (ENSOCUG00000001712) #26	GCFC2 (ENSOCUG00000001715) #27	ENSOCUG00000022879	LRRTM4 (ENSOCUG00000011833) #28	ENSOCUG00000026249	ENSOCUG00000015884 #31	REG1A (ENSOCUG00000027194)	ENSOCUG00000005632 #31	ENSOCUG00000030492	LRRTM1 (ENSOCUG00000005244)	ENSOCUG00000035825
Pika	MODERN SPECIES	2559																HK2 (ENSOPRG00000005838) #22
Tree shrew	MODERN SPECIES	2885																HK2 (ENSTBEG00000014904) #22
Primates	ANCESTRAL SPECIES	14	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162393.e	ENSGT00940000162300	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000163728	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C.c #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351
Hominidae	ANCESTRAL SPECIES	19	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C.c #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C.c #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000154783.e.a	ENSGT00940000156351
Gorilla	MODERN SPECIES	14	WBP1 (ENSGGOG00000014621)	MOGS (ENSGGOG00000037551)	MRPL53 (ENSGGOG00000006504)	CCDC142 (ENSGGOG00000006259)	TTC31 (ENSGGOG00000006274)	LBX2 (ENSGGOG00000006290)	PCGF1 (ENSGGOG00000006296)	TLX2 (ENSGGOG00000006302)	DQX1 (ENSGGOG00000006307)	AUP1 (ENSGGOG00000006317)	HTRA2 (ENSGGOG00000006327)	LOXL3 (ENSGGOG00000006334)	DOK1 (ENSGGOG00000006346)	M1AP (ENSGGOG00000013975)	SEMA4F (ENSGGOG00000013107)	HK2 (ENSGGOG00000006313) #22	POLE4 (ENSGGOG00000004491) #23	TACR1 (ENSGGOG00000001538) #24	ENSGGOG00000037529	MRPL19 (ENSGGOG00000027896) #26	GCFC2 (ENSGGOG00000025320) #27	LRRTM4 (ENSGGOG00000008587) #28	REG3G (ENSGGOG00000011782)	REG1B (ENSGGOG00000003112)	REG1A (ENSGGOG00000004968)	REG3A (ENSGGOG00000011544)	ENSGGOG00000023594	LRRTM1 (ENSGGOG00000001604)	CTNNA2 (ENSGGOG00000010490)	ENSGGOG00000014682	SUCLG1 (ENSGGOG00000002034)
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C.c #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000154783.e.a	ENSGT00940000156351
Pan	ANCESTRAL SPECIES	17	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C.c #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00910000147841	ENSGT00870000136493.d.h	ENSGT00940000161705
Bonobo	MODERN SPECIES	14	MRPL53 (ENSPPAG00000029905)	CCDC142 (ENSPPAG00000041376)	TTC31 (ENSPPAG00000039006)	LBX2 (ENSPPAG00000040020)	PCGF1 (ENSPPAG00000029886)	TLX2 (ENSPPAG00000033023)	DQX1 (ENSPPAG00000034827)	AUP1 (ENSPPAG00000029713)	HTRA2 (ENSPPAG00000040827)	LOXL3 (ENSPPAG00000019493)	DOK1 (ENSPPAG00000038215)	M1AP (ENSPPAG00000029783)	ENSPPAG00000042188	SEMA4F (ENSPPAG00000043887)	ENSPPAG00000019174	HK2 (ENSPPAG00000038583) #22	POLE4 (ENSPPAG00000030474) #23	TACR1 (ENSPPAG00000027654) #24	EVA1A (ENSPPAG00000039299) #25	MRPL19 (ENSPPAG00000040229) #26	GCFC2 (ENSPPAG00000041211) #27	LRRTM4 (ENSPPAG00000037560) #28	REG3G (ENSPPAG00000029045)	REG1B (ENSPPAG00000029495)	REG1A (ENSPPAG00000041956)	ENSPPAG00000036667	REG3A (ENSPPAG00000022156)	CTNNA2 (ENSPPAG00000040375)	ENSPPAG00000012586	ENSPPAG00000029108	LRRTM1 (ENSPPAG00000003510)
Chimpanzee	MODERN SPECIES	14	MRPL53 (ENSPTRG00000044829)	CCDC142 (ENSPTRG00000012090)	TTC31 (ENSPTRG00000012091)	LBX2 (ENSPTRG00000012092)	PCGF1 (ENSPTRG00000012094)	TLX2 (ENSPTRG00000012095)	DQX1 (ENSPTRG00000012096)	AUP1 (ENSPTRG00000012097)	HTRA2 (ENSPTRG00000012098)	LOXL3 (ENSPTRG00000012099)	DOK1 (ENSPTRG00000012100)	M1AP (ENSPTRG00000012101)	ENSPTRG00000049973	SEMA4F (ENSPTRG00000012103)	ENSPTRG00000044271	HK2 (ENSPTRG00000012104) #22	POLE4 (ENSPTRG00000012105) #23	TACR1 (ENSPTRG00000012106) #24	EVA1A (ENSPTRG00000012107) #25	MRPL19 (ENSPTRG00000012108) #26	GCFC2 (ENSPTRG00000012110) #27	LRRTM4 (ENSPTRG00000012111) #28	REG3G (ENSPTRG00000012112)	REG1B (ENSPTRG00000012113)	REG1A (ENSPTRG00000012114)	ENSPTRG00000049611	REG3A (ENSPTRG00000012116)	CTNNA2 (ENSPTRG00000049489)	ENSPTRG00000044202	ENSPTRG00000049329	LRRTM1 (ENSPTRG00000012118)
Human	MODERN SPECIES	11	WBP1 (ENSG00000239779)	MOGS (ENSG00000115275)	MRPL53 (ENSG00000204822)	CCDC142 (ENSG00000135637)	TTC31 (ENSG00000115282)	LBX2 (ENSG00000179528)	PCGF1 (ENSG00000115289)	TLX2 (ENSG00000115297)	DQX1 (ENSG00000144045)	AUP1 (ENSG00000115307)	HTRA2 (ENSG00000115317)	LOXL3 (ENSG00000115318)	DOK1 (ENSG00000115325)	M1AP (ENSG00000159374)	SEMA4F (ENSG00000135622)	HK2 (ENSG00000159399) #22	POLE4 (ENSG00000115350) #23	TACR1 (ENSG00000115353) #24	EVA1A (ENSG00000115363) #25	MRPL19 (ENSG00000115364) #26	GCFC2 (ENSG00000005436) #27	LRRTM4 (ENSG00000176204) #28	REG3G (ENSG00000143954)	REG1B (ENSG00000172023)	REG1A (ENSG00000115386)	REG3A (ENSG00000172016)	CTNNA2 (ENSG00000066032)	LRRTM1 (ENSG00000162951)	SUCLG1 (ENSG00000163541)	DNAH6 (ENSG00000115423)	TRABD2A (ENSG00000186854)
Orangutan	MODERN SPECIES	14	MOGS (ENSPPYG00000032507)	MRPL53 (ENSPPYG00000039413)	CCDC142 (ENSPPYG00000012272)	TTC31 (ENSPPYG00000012271)	LBX2 (ENSPPYG00000038366)	PCGF1 (ENSPPYG00000012270)	TLX2 (ENSPPYG00000012269)	DQX1 (ENSPPYG00000012268)	AUP1 (ENSPPYG00000012267)	HTRA2 (ENSPPYG00000012266)	LOXL3 (ENSPPYG00000012265)	DOK1 (ENSPPYG00000012264)	M1AP (ENSPPYG00000012263)	ENSPPYG00000012261	SEMA4F (ENSPPYG00000012262)	HK2 (ENSPPYG00000012260) #22	POLE4 (ENSPPYG00000037410) #23	TACR1 (ENSPPYG00000012257) #24	EVA1A (ENSPPYG00000012256) #25	MRPL19 (ENSPPYG00000012255) #26	GCFC2 (ENSPPYG00000012254) #27	LRRTM4 (ENSPPYG00000012253) #28	REG3G (ENSPPYG00000012248)	REG1B (ENSPPYG00000035565)	ENSPPYG00000038327	REG1A (ENSPPYG00000034399)	REG3A (ENSPPYG00000012251)	LRRTM1 (ENSPPYG00000012246)	CTNNA2 (ENSPPYG00000012245)	ENSPPYG00000012243	SUCLG1 (ENSPPYG00000040003)
Gibbon	MODERN SPECIES	4	MOGS (ENSNLEG00000000658)	MRPL53 (ENSNLEG00000032770)	CCDC142 (ENSNLEG00000000677)	TTC31 (ENSNLEG00000000698)	LBX2 (ENSNLEG00000000746)	PCGF1 (ENSNLEG00000029223)	TLX2 (ENSNLEG00000000766)	DQX1 (ENSNLEG00000000771)	AUP1 (ENSNLEG00000000790)	HTRA2 (ENSNLEG00000034567)	LOXL3 (ENSNLEG00000000953)	DOK1 (ENSNLEG00000027302)	M1AP (ENSNLEG00000001034)	ENSNLEG00000029795	SEMA4F (ENSNLEG00000001057)	HK2 (ENSNLEG00000001062) #22	POLE4 (ENSNLEG00000027475) #23	TACR1 (ENSNLEG00000031195) #24	EVA1A (ENSNLEG00000001133) #25	MRPL19 (ENSNLEG00000001142) #26	ENSNLEG00000028366	GCFC2 (ENSNLEG00000001166) #27	ENSNLEG00000032694	LRRTM4 (ENSNLEG00000001198) #28	ENSNLEG00000035977	ENSNLEG00000032509	REG3G (ENSNLEG00000001205)	REG3A (ENSNLEG00000001228)	ENSNLEG00000031764	CTNNA2 (ENSNLEG00000001259)	ENSNLEG00000028214
Hominoidea	ANCESTRAL SPECIES																	ENSGT00950000182787.C.d #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00950000182787.C.d #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00950000182787.C.d #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00950000182787.C.d #22
Pan	ANCESTRAL SPECIES	6	ENSGT00940000154911.v	ENSGT00950000182994.A.n.a	ENSGT00390000000141	ENSGT00940000159611	ENSGT00950000183121.b.b.b.a	ENSGT00530000063666.a.m.a	ENSGT00390000008591	ENSGT00940000159242	ENSGT00730000111075.b	ENSGT00940000161429	ENSGT00940000153314.b	ENSGT00940000156017	ENSGT00730000111570	ENSGT00950000182869.e.a.b.sb.b.a.a.a	ENSGT00950000183107.a.b.b	ENSGT00950000182787.C.d #22	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00940000162488	ENSGT00940000161206	ENSGT00950000183115.b.b	ENSGT01030000234518.D	ENSGT01100000263536.A.a.a.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.B.c.b	ENSGT00940000161697.f	ENSGT00390000008820.e.b.a.b	ENSGT00390000008820.e.b.b	ENSGT00940000159568	ENSGT00390000012178.g.a.b.b	ENSGT00390000012030.b.a
Chimpanzee	MODERN SPECIES	972	POF1B (ENSPTRG00000022070)	ZNF711 (ENSPTRG00000022069)	ENSPTRG00000022068	ENSPTRG00000043670	APOOL (ENSPTRG00000022067)	ENSPTRG00000048780	HDX (ENSPTRG00000022065)	RPS6KA6 (ENSPTRG00000022064)	CYLC1 (ENSPTRG00000022063)	POU3F4 (ENSPTRG00000040705)	ENSPTRG00000047666	SH3BGRL (ENSPTRG00000022061)	HMGN5 (ENSPTRG00000022527)	ENSPTRG00000048534	BRWD3 (ENSPTRG00000022060)	ENSPTRG00000045129 #22	ENSPTRG00000046735	ENSPTRG00000047256	TENT5D (ENSPTRG00000049359)	TBX22 (ENSPTRG00000022058)	ITM2A (ENSPTRG00000022057)	GPR174 (ENSPTRG00000039454)	P2RY10 (ENSPTRG00000050132)	LPAR4 (ENSPTRG00000022056)	CYSLTR1 (ENSPTRG00000022054)	TAF9B (ENSPTRG00000022053)	PGK1 (ENSPTRG00000022052)	ATP7A (ENSPTRG00000022050)	COX7B (ENSPTRG00000022049)	MAGT1 (ENSPTRG00000022048)	ATRX (ENSPTRG00000022047)
Bonobo	MODERN SPECIES	369	POF1B (ENSPPAG00000033485)	ZNF711 (ENSPPAG00000038129)	ENSPPAG00000033891	APOOL (ENSPPAG00000037582)	HDX (ENSPPAG00000031927)	RPS6KA6 (ENSPPAG00000010461)	CYLC1 (ENSPPAG00000019947)	ENSPPAG00000043882	POU3F4 (ENSPPAG00000017170)	ENSPPAG00000040389	ENSPPAG00000037558	SH3BGRL (ENSPPAG00000035293)	ENSPPAG00000037242	ENSPPAG00000037661	BRWD3 (ENSPPAG00000036225)	ENSPPAG00000038929 #22	ENSPPAG00000019114	ENSPPAG00000042789	TBX22 (ENSPPAG00000040549)	ITM2A (ENSPPAG00000031833)	GPR174 (ENSPPAG00000016269)	CYSLTR1 (ENSPPAG00000008752)	TAF9B (ENSPPAG00000042950)	ENSPPAG00000039675	ATP7A (ENSPPAG00000041943)	COX7B (ENSPPAG00000038135)	MAGT1 (ENSPPAG00000037154)	ATRX (ENSPPAG00000043806)	FGF16 (ENSPPAG00000033879)	MAGEE1 (ENSPPAG00000023414)	ENSPPAG00000028661
Gorilla	MODERN SPECIES	523	POF1B (ENSGGOG00000016908)	ZNF711 (ENSGGOG00000006110)	SATL1 (ENSGGOG00000016333)	ENSGGOG00000016329	HDX (ENSGGOG00000005551)	RPS6KA6 (ENSGGOG00000016474)	CYLC1 (ENSGGOG00000001587)	POU3F4 (ENSGGOG00000027353)	ENSGGOG00000025534	SH3BGRL (ENSGGOG00000009664)	HMGN5 (ENSGGOG00000016479)	ENSGGOG00000039492	ENSGGOG00000037044	ENSGGOG00000039837	BRWD3 (ENSGGOG00000004108)	ENSGGOG00000015916 #22	ENSGGOG00000043041	TBX22 (ENSGGOG00000008990)	ITM2A (ENSGGOG00000026998)	GPR174 (ENSGGOG00000024322)	CYSLTR1 (ENSGGOG00000003276)	TAF9B (ENSGGOG00000002470)	PGK1 (ENSGGOG00000017111)	ATP7A (ENSGGOG00000025640)	COX7B (ENSGGOG00000023347)	MAGT1 (ENSGGOG00000010342)	ATRX (ENSGGOG00000024999)	FGF16 (ENSGGOG00000002237)	ENSGGOG00000025599	ENSGGOG00000027341	PBDC1 (ENSGGOG00000013084)
Gibbon	MODERN SPECIES	449	CHM (ENSNLEG00000002762)	ENSNLEG00000032608	POF1B (ENSNLEG00000002694)	ZNF711 (ENSNLEG00000002656)	APOOL (ENSNLEG00000002634)	HDX (ENSNLEG00000002624)	RPS6KA6 (ENSNLEG00000002544)	CYLC1 (ENSNLEG00000002527)	ENSNLEG00000032492	ENSNLEG00000028823	SH3BGRL (ENSNLEG00000002464)	HMGN5 (ENSNLEG00000034708)	ENSNLEG00000034864	ENSNLEG00000034470	BRWD3 (ENSNLEG00000002210)	ENSNLEG00000029546 #22	TBX22 (ENSNLEG00000002116)	GPR174 (ENSNLEG00000019047)	ENSNLEG00000034148	P2RY10 (ENSNLEG00000002088)	LPAR4 (ENSNLEG00000019046)	ENSNLEG00000002074	CYSLTR1 (ENSNLEG00000002067)	TAF9B (ENSNLEG00000001378)	ENSNLEG00000001423	ATP7A (ENSNLEG00000001351)	MAGT1 (ENSNLEG00000001330)	ATRX (ENSNLEG00000001144)	FGF16 (ENSNLEG00000001138)	ENSNLEG00000001137	PBDC1 (ENSNLEG00000001123)
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT00940000161705	ENSGT01030000234543.A.a
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT00940000161705	ENSGT01030000234543.A.a
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362	ENSGT00940000154909 #28	ENSGT00940000153241.A.l.b	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT00940000161705
Macaca	ANCESTRAL SPECIES	17	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362	ENSGT00940000154909 #28	ENSGT00940000153241.A.l.b	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT00940000161705
Pig-tailed macaque	MODERN SPECIES	341	MOGS (ENSMNEG00000042799)	MRPL53 (ENSMNEG00000040378)	CCDC142 (ENSMNEG00000043743)	TTC31 (ENSMNEG00000000034)	LBX2 (ENSMNEG00000037341)	PCGF1 (ENSMNEG00000042227)	TLX2 (ENSMNEG00000006060)	DQX1 (ENSMNEG00000043354)	AUP1 (ENSMNEG00000034556)	HTRA2 (ENSMNEG00000044494)	LOXL3 (ENSMNEG00000030648)	DOK1 (ENSMNEG00000031847)	M1AP (ENSMNEG00000028589)	SEMA4F (ENSMNEG00000042562)	ENSMNEG00000033745	HK2 (ENSMNEG00000036197) #22	POLE4 (ENSMNEG00000014492) #23	TACR1 (ENSMNEG00000015631) #24	EVA1A (ENSMNEG00000009692) #25	MRPL19 (ENSMNEG00000039037) #26	GCFC2 (ENSMNEG00000035165) #27	ENSMNEG00000026354	LRRTM4 (ENSMNEG00000039557) #28	ENSMNEG00000031795	ENSMNEG00000044917	ENSMNEG00000031490	REG3G (ENSMNEG00000043718)	REG1B (ENSMNEG00000035935)	ENSMNEG00000041460	REG1A (ENSMNEG00000045263)	ENSMNEG00000031141
Macaca_a	ANCESTRAL SPECIES	15	ENSGT01100000263539.b.a.a.a.a.a.b.b.b.a.b.a.a.a.a.a.b	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00940000167556.b.b.a.a.b	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00390000005569.x.a.b.b.a.a	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.a.b.b	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT01100000263493.a.b.a.b.b.b.a.a.a.b
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000062864	MRPL53 (ENSMFAG00000055310)	ENSMFAG00000053960	CCDC142 (ENSMFAG00000002637)	TTC31 (ENSMFAG00000045499)	LBX2 (ENSMFAG00000043381)	PCGF1 (ENSMFAG00000003993)	TLX2 (ENSMFAG00000062580)	DQX1 (ENSMFAG00000001892)	HTRA2 (ENSMFAG00000035578)	LOXL3 (ENSMFAG00000039237)	DOK1 (ENSMFAG00000042078)	ENSMFAG00000064120	M1AP (ENSMFAG00000033744)	SEMA4F (ENSMFAG00000027141)	HK2 (ENSMFAG00000035505) #22	POLE4 (ENSMFAG00000038541) #23	TACR1 (ENSMFAG00000043621) #24	EVA1A (ENSMFAG00000021015) #25	MRPL19 (ENSMFAG00000043946) #26	GCFC2 (ENSMFAG00000043921) #27	ENSMFAG00000060034	ENSMFAG00000055035	ENSMFAG00000031430	ENSMFAG00000062967	LRRTM4 (ENSMFAG00000001899) #28	REG3G (ENSMFAG00000034401)	REG1B (ENSMFAG00000001029)	REG1A (ENSMFAG00000002544)	ENSMFAG00000059065	REG3A (ENSMFAG00000033949)
Rhesus	MODERN SPECIES	4	ENSMMUG00000049688	MRPL53 (ENSMMUG00000061711)	CCDC142 (ENSMMUG00000002725)	TTC31 (ENSMMUG00000002123)	LBX2 (ENSMMUG00000002125)	PCGF1 (ENSMMUG00000002127)	TLX2 (ENSMMUG00000043505)	DQX1 (ENSMMUG00000002129)	AUP1 (ENSMMUG00000002131)	HTRA2 (ENSMMUG00000002136)	LOXL3 (ENSMMUG00000002138)	DOK1 (ENSMMUG00000002139)	ENSMMUG00000050379	M1AP (ENSMMUG00000002140)	SEMA4F (ENSMMUG00000005149)	HK2 (ENSMMUG00000011845) #22	POLE4 (ENSMMUG00000001845) #23	ENSMMUG00000053587	TACR1 (ENSMMUG00000001846) #24	ENSMMUG00000051843	ENSMMUG00000049930	EVA1A (ENSMMUG00000048322) #25	MRPL19 (ENSMMUG00000023758) #26	GCFC2 (ENSMMUG00000018512) #27	ENSMMUG00000064821	ENSMMUG00000056785	ENSMMUG00000061799	ENSMMUG00000052499	ENSMMUG00000056920	LRRTM4 (ENSMMUG00000000181) #28	REG3G (ENSMMUG00000061134)
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362	ENSGT00940000154909 #28	ENSGT00940000153241.A.l.b	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e	ENSGT00940000163728.b	ENSGT00940000162300.b	ENSGT00940000161705
Olive baboon	MODERN SPECIES	5	WBP1 (ENSPANG00000023894)	MOGS (ENSPANG00000025371)	MRPL53 (ENSPANG00000032404)	CCDC142 (ENSPANG00000007143)	TTC31 (ENSPANG00000006088)	LBX2 (ENSPANG00000012324)	PCGF1 (ENSPANG00000009012)	ENSPANG00000011215	DQX1 (ENSPANG00000014436)	AUP1 (ENSPANG00000020439)	HTRA2 (ENSPANG00000025370)	LOXL3 (ENSPANG00000023892)	DOK1 (ENSPANG00000009011)	M1AP (ENSPANG00000016174)	SEMA4F (ENSPANG00000018471)	HK2 (ENSPANG00000016024) #22	POLE4 (ENSPANG00000024718) #23	ENSPANG00000020438 #24	EVA1A (ENSPANG00000037267) #25	MRPL19 (ENSPANG00000024067) #26	GCFC2 (ENSPANG00000004968) #27	ENSPANG00000042039	LRRTM4 (ENSPANG00000006180) #28	ENSPANG00000045214	ENSPANG00000039778	ENSPANG00000037387	REG3G (ENSPANG00000016173)	REG1B (ENSPANG00000049970)	ENSPANG00000039407	REG1A (ENSPANG00000048010)	ENSPANG00000034723
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00910000147362
Sooty mangabey	MODERN SPECIES	251	MRPL53 (ENSCATG00000009492)	CCDC142 (ENSCATG00000033704)	TTC31 (ENSCATG00000035568)	LBX2 (ENSCATG00000033635)	PCGF1 (ENSCATG00000036071)	TLX2 (ENSCATG00000035266)	DQX1 (ENSCATG00000037156)	AUP1 (ENSCATG00000025926)	HTRA2 (ENSCATG00000037890)	LOXL3 (ENSCATG00000001609)	DOK1 (ENSCATG00000013699)	M1AP (ENSCATG00000039619)	ENSCATG00000025408	SEMA4F (ENSCATG00000040857)	ENSCATG00000040304	HK2 (ENSCATG00000034110) #22	POLE4 (ENSCATG00000033537) #23	TACR1 (ENSCATG00000035330) #24	EVA1A (ENSCATG00000041521) #25	MRPL19 (ENSCATG00000031286) #26	GCFC2 (ENSCATG00000044850) #27	ENSCATG00000019099
Drill	MODERN SPECIES	145															SEMA4F (ENSMLEG00000038666)	HK2 (ENSMLEG00000012442) #22	POLE4 (ENSMLEG00000029886) #23	TACR1 (ENSMLEG00000035572) #24	EVA1A (ENSMLEG00000030553) #25
Vervet Monkey	MODERN SPECIES	5	MOGS (ENSCSAG00000015611)	WBP1 (ENSCSAG00000015607)	MRPL53 (ENSCSAG00000015617)	CCDC142 (ENSCSAG00000015622)	TTC31 (ENSCSAG00000015637)	LBX2 (ENSCSAG00000015648)	PCGF1 (ENSCSAG00000015654)	TLX2 (ENSCSAG00000015661)	DQX1 (ENSCSAG00000015682)	AUP1 (ENSCSAG00000015721)	HTRA2 (ENSCSAG00000015736)	LOXL3 (ENSCSAG00000015742)	DOK1 (ENSCSAG00000015748)	M1AP (ENSCSAG00000015778)	SEMA4F (ENSCSAG00000015795)	HK2 (ENSCSAG00000015807) #22	POLE4 (ENSCSAG00000015812) #23	TACR1 (ENSCSAG00000015821) #24	EVA1A (ENSCSAG00000015831) #25	ENSCSAG00000015841 #26	GCFC2 (ENSCSAG00000015854) #27	ENSCSAG00000019437	LRRTM4 (ENSCSAG00000015859) #28	REG1B (ENSCSAG00000015863)	ENSCSAG00000015868	REG1A (ENSCSAG00000015871)	REG3A (ENSCSAG00000015875)	ENSCSAG00000015880	LRRTM1 (ENSCSAG00000019436)	CTNNA2 (ENSCSAG00000015885)	SUCLG1 (ENSCSAG00000015890)
Rhinopithecus	ANCESTRAL SPECIES	182	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00390000004428.a.g.a	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24
Golden snub-nosed monkey	MODERN SPECIES	2142	MRPL53 (ENSRROG00000045669)	CCDC142 (ENSRROG00000037851)	TTC31 (ENSRROG00000039997)	LBX2 (ENSRROG00000042711)	PCGF1 (ENSRROG00000040010)	TLX2 (ENSRROG00000045279)	DQX1 (ENSRROG00000039342)	AUP1 (ENSRROG00000034316)	HTRA2 (ENSRROG00000042112)	LOXL3 (ENSRROG00000044695)	DOK1 (ENSRROG00000040278)	M1AP (ENSRROG00000008904)	ENSRROG00000034887	SEMA4F (ENSRROG00000018985)	ENSRROG00000035817	HK2 (ENSRROG00000031120) #22	POLE4 (ENSRROG00000001091) #23	TACR1 (ENSRROG00000014335) #24
Black snub-nosed monkey	MODERN SPECIES	511	MRPL53 (ENSRBIG00000013215)	CCDC142 (ENSRBIG00000032883)	TTC31 (ENSRBIG00000035642)	LBX2 (ENSRBIG00000031570)	PCGF1 (ENSRBIG00000042309)	TLX2 (ENSRBIG00000035612)	DQX1 (ENSRBIG00000041823)	AUP1 (ENSRBIG00000035697)	HTRA2 (ENSRBIG00000036731)	LOXL3 (ENSRBIG00000034576)	DOK1 (ENSRBIG00000040230)	M1AP (ENSRBIG00000035696)	ENSRBIG00000011938	SEMA4F (ENSRBIG00000016698)	ENSRBIG00000034411	HK2 (ENSRBIG00000034566) #22	POLE4 (ENSRBIG00000036574) #23	TACR1 (ENSRBIG00000036985) #24
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415.m #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e.a	ENSGT00940000162300.b	ENSGT00910000147841	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351
Cebidae	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415.m #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e.a	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00910000147841	ENSGT00940000161705	ENSGT00940000156351
Marmoset	MODERN SPECIES	5	MOGS (ENSCJAG00000017489)	MRPL53 (ENSCJAG00000043158)	CCDC142 (ENSCJAG00000017481)	TTC31 (ENSCJAG00000042312)	LBX2 (ENSCJAG00000039349)	PCGF1 (ENSCJAG00000017432)	ENSCJAG00000017424	DQX1 (ENSCJAG00000017388)	AUP1 (ENSCJAG00000017289)	HTRA2 (ENSCJAG00000017285)	LOXL3 (ENSCJAG00000017255)	DOK1 (ENSCJAG00000066183)	M1AP (ENSCJAG00000017228)	SEMA4F (ENSCJAG00000017198)	ENSCJAG00000021940	HK2 (ENSCJAG00000017161) #22	POLE4 (ENSCJAG00000017156) #23	TACR1 (ENSCJAG00000079068) #24	EVA1A (ENSCJAG00000066426) #25	ENSCJAG00000017116 #26	GCFC2 (ENSCJAG00000017096) #27	ENSCJAG00000041482	LRRTM4 (ENSCJAG00000021936) #28	REG3G (ENSCJAG00000017063)	REG1B (ENSCJAG00000062192)	ENSCJAG00000061676	ENSCJAG00000074605	LRRTM1 (ENSCJAG00000065289)	CTNNA2 (ENSCJAG00000017015)	ENSCJAG00000079286	ENSCJAG00000022822
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C.c	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415.m #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.a	ENSGT00940000163728.a	ENSGT00940000162393.f	ENSGT00940000162393.e.a	ENSGT00940000162300.b	ENSGT01030000234543.A.a	ENSGT00910000147841	ENSGT00940000161705
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	48	WBP1 (ENSSBOG00000023080)	MOGS (ENSSBOG00000035987)	MRPL53 (ENSSBOG00000026949)	CCDC142 (ENSSBOG00000025290)	TTC31 (ENSSBOG00000019668)	LBX2 (ENSSBOG00000033984)	PCGF1 (ENSSBOG00000035380)	TLX2 (ENSSBOG00000036131)	DQX1 (ENSSBOG00000028107)	AUP1 (ENSSBOG00000027081)	HTRA2 (ENSSBOG00000022781)	LOXL3 (ENSSBOG00000030046)	DOK1 (ENSSBOG00000029899)	M1AP (ENSSBOG00000035906)	SEMA4F (ENSSBOG00000030390)	ENSSBOG00000030764 #22	POLE4 (ENSSBOG00000026569) #23	TACR1 (ENSSBOG00000036178) #24	EVA1A (ENSSBOG00000024184) #25	MRPL19 (ENSSBOG00000028150) #26	GCFC2 (ENSSBOG00000034592) #27	LRRTM4 (ENSSBOG00000035286) #28	REG3G (ENSSBOG00000036198)	REG1B (ENSSBOG00000023051)	ENSSBOG00000034730	REG1A (ENSSBOG00000023752)	REG3A (ENSSBOG00000023185)	LRRTM1 (ENSSBOG00000020152)	CTNNA2 (ENSSBOG00000024059)
Bolivian squirrel monkey	MODERN SPECIES	322																ENSSBOG00000032232 #22	ENSSBOG00000029433
Capuchin	MODERN SPECIES	399	WBP1 (ENSCCAG00000016415)	ENSCCAG00000023897	MRPL53 (ENSCCAG00000025749)	CCDC142 (ENSCCAG00000028972)	TTC31 (ENSCCAG00000029941)	LBX2 (ENSCCAG00000035245)	PCGF1 (ENSCCAG00000029766)	TLX2 (ENSCCAG00000027997)	DQX1 (ENSCCAG00000031484)	AUP1 (ENSCCAG00000003429)	HTRA2 (ENSCCAG00000026105)	LOXL3 (ENSCCAG00000034268)	DOK1 (ENSCCAG00000022337)	M1AP (ENSCCAG00000026442)	SEMA4F (ENSCCAG00000037864)	HK2 (ENSCCAG00000031431) #22	POLE4 (ENSCCAG00000022652) #23	TACR1 (ENSCCAG00000030630) #24	SPEF1 (ENSCCAG00000023823)	EVA1A (ENSCCAG00000029985) #25	ENSCCAG00000033770 #26	GCFC2 (ENSCCAG00000032749) #27
Mas night monkey	MODERN SPECIES	511	WBP1 (ENSANAG00000022689)	MOGS (ENSANAG00000036341)	MRPL53 (ENSANAG00000032295)	CCDC142 (ENSANAG00000032667)	TTC31 (ENSANAG00000025145)	LBX2 (ENSANAG00000034678)	PCGF1 (ENSANAG00000038249)	TLX2 (ENSANAG00000038149)	DQX1 (ENSANAG00000033980)	AUP1 (ENSANAG00000031188)	HTRA2 (ENSANAG00000028173)	LOXL3 (ENSANAG00000022279)	DOK1 (ENSANAG00000020409)	M1AP (ENSANAG00000037149)	SEMA4F (ENSANAG00000035005)	HK2 (ENSANAG00000022967) #22	POLE4 (ENSANAG00000007710) #23	TACR1 (ENSANAG00000036733) #24	EVA1A (ENSANAG00000034534) #25	ENSANAG00000036067 #26	GCFC2 (ENSANAG00000029473) #27	LRRTM4 (ENSANAG00000035746) #28	REG3G (ENSANAG00000030440)	REG1B (ENSANAG00000021720)	ENSANAG00000037848	REG1A (ENSANAG00000038055)	REG3A (ENSANAG00000025208)	CTNNA2 (ENSANAG00000030034)	ENSANAG00000023701	LRRTM1 (ENSANAG00000005573)
Tarsier	MODERN SPECIES	5635															SEMA4F (ENSTSYG00000014733)	HK2 (ENSTSYG00000002677) #22
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000163728	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000163728	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Lemuriformes_a	ANCESTRAL SPECIES	114	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00910000148684	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000163728	ENSGT01030000234543.A.a	ENSGT00940000161705
Greater bamboo lemur	MODERN SPECIES	261	MOGS (ENSPSMG00000020330)	CCDC142 (ENSPSMG00000020355)	MRPL53 (ENSPSMG00000020361)	TTC31 (ENSPSMG00000020401)	LBX2 (ENSPSMG00000020411)	PCGF1 (ENSPSMG00000020429)	TLX2 (ENSPSMG00000020437)	DQX1 (ENSPSMG00000020448)	AUP1 (ENSPSMG00000020472)	HTRA2 (ENSPSMG00000020490)	LOXL3 (ENSPSMG00000020666)	DOK1 (ENSPSMG00000020713)	M1AP (ENSPSMG00000020735)	SEMA4F (ENSPSMG00000020826)	ENSPSMG00000020842	HK2 (ENSPSMG00000020893) #22	LMBRD1 (ENSPSMG00000021019)	ADGRB3 (ENSPSMG00000021149)	ENSPSMG00000021170	ENSPSMG00000021203	ENSPSMG00000021208	PHF3 (ENSPSMG00000021239)	PTP4A1 (ENSPSMG00000021297)	ENSPSMG00000021319	LGSN (ENSPSMG00000021338)	ENSPSMG00000021341	KHDRBS2 (ENSPSMG00000021354)	ENSPSMG00000021375	PRIM2 (ENSPSMG00000021401)	RAB23 (ENSPSMG00000021419)	BAG2 (ENSPSMG00000021428)
Coquerels sifaka	MODERN SPECIES	1019																HK2 (ENSPCOG00000017939) #22	POLE4 (ENSPCOG00000017045) #23	ENSPCOG00000022815	TACR1 (ENSPCOG00000017945) #24	EVA1A (ENSPCOG00000000066) #25	ENSPCOG00000010787 #26	GCFC2 (ENSPCOG00000006760) #27	LRRTM4 (ENSPCOG00000022638) #28	ENSPCOG00000014427	ENSPCOG00000018574	ENSPCOG00000022283	ENSPCOG00000002763	ENSPCOG00000015923
Mouse lemur	MODERN SPECIES	26	WBP1 (ENSMICG00000006192)	MOGS (ENSMICG00000006197)	MRPL53 (ENSMICG00000042776)	CCDC142 (ENSMICG00000006207)	TTC31 (ENSMICG00000006211)	LBX2 (ENSMICG00000046194)	PCGF1 (ENSMICG00000006222)	TLX2 (ENSMICG00000048139)	DQX1 (ENSMICG00000006232)	AUP1 (ENSMICG00000044754)	HTRA2 (ENSMICG00000006256)	LOXL3 (ENSMICG00000006262)	DOK1 (ENSMICG00000047288)	M1AP (ENSMICG00000006285)	SEMA4F (ENSMICG00000035174)	HK2 (ENSMICG00000011332) #22	POLE4 (ENSMICG00000035864) #23	TACR1 (ENSMICG00000027990) #24	EVA1A (ENSMICG00000003626) #25	ENSMICG00000003637 #26	GCFC2 (ENSMICG00000028998) #27	LRRTM4 (ENSMICG00000010898) #28	ENSMICG00000042938	ENSMICG00000004912	ENSMICG00000004914	ENSMICG00000045520	ENSMICG00000047387	CTNNA2 (ENSMICG00000001476)	LRRTM1 (ENSMICG00000038543)	SUCLG1 (ENSMICG00000005754)	DNAH6 (ENSMICG00000015331)
Bushbaby	MODERN SPECIES	183	WBP1 (ENSOGAG00000001056)	MOGS (ENSOGAG00000001058)	MRPL53 (ENSOGAG00000001059)	CCDC142 (ENSOGAG00000001060)	TTC31 (ENSOGAG00000001061)	LBX2 (ENSOGAG00000001063)	PCGF1 (ENSOGAG00000001064)	TLX2 (ENSOGAG00000015851)	DQX1 (ENSOGAG00000001065)	AUP1 (ENSOGAG00000001066)	HTRA2 (ENSOGAG00000027436)	LOXL3 (ENSOGAG00000034152)	DOK1 (ENSOGAG00000005413)	M1AP (ENSOGAG00000001067)	SEMA4F (ENSOGAG00000031423)	HK2 (ENSOGAG00000015769) #22	POLE4 (ENSOGAG00000015781) #23	ENSOGAG00000012314	TACR1 (ENSOGAG00000007100) #24	EVA1A (ENSOGAG00000016360) #25	MRPL19 (ENSOGAG00000001159) #26	GCFC2 (ENSOGAG00000001160) #27	ENSOGAG00000030569
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000162300	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182787.C #22
Hedgehog	MODERN SPECIES	5262															ENSEEUG00000008136	HK2 (ENSEEUG00000008440) #22
Common shrew	MODERN SPECIES	4066																HK2 (ENSSARG00000000556) #22
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Suina	ANCESTRAL SPECIES	13	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038	ENSGT00530000064712	ENSGT00390000017613
Pig	MODERN SPECIES	11	MOGS (ENSSSCG00000022786)	ENSSSCG00000057727	CCDC142 (ENSSSCG00000008270)	TTC31 (ENSSSCG00000008275)	LBX2 (ENSSSCG00000008278)	ENSSSCG00000033366	TLX2 (ENSSSCG00000022499)	DQX1 (ENSSSCG00000022614)	AUP1 (ENSSSCG00000008268)	HTRA2 (ENSSSCG00000039882)	LOXL3 (ENSSSCG00000008266)	DOK1 (ENSSSCG00000008265)	ENSSSCG00000008263	ENSSSCG00000062275	SEMA4F (ENSSSCG00000008262)	HK2 (ENSSSCG00000008261) #22	POLE4 (ENSSSCG00000038307) #23	TACR1 (ENSSSCG00000036008) #24	EVA1A (ENSSSCG00000035958) #25	MRPL19 (ENSSSCG00000021007) #26	GCFC2 (ENSSSCG00000021287) #27	ENSSSCG00000043408	ENSSSCG00000052778	LRRTM4 (ENSSSCG00000008259) #28	ENSSSCG00000042171	ENSSSCG00000022842	ENSSSCG00000031177 #31	ENSSSCG00000056535 #31	ENSSSCG00000037620 #31	ENSSSCG00000061603	ENSSSCG00000062035
Chacoan peccary	MODERN SPECIES	777	WBP1 (ENSCWAG00000017152)	MOGS (ENSCWAG00000017228)	MRPL53 (ENSCWAG00000017420)	CCDC142 (ENSCWAG00000017462)	TTC31 (ENSCWAG00000017534)	LBX2 (ENSCWAG00000017597)	PCGF1 (ENSCWAG00000017625)	TLX2 (ENSCWAG00000017689)	DQX1 (ENSCWAG00000017719)	AUP1 (ENSCWAG00000017790)	HTRA2 (ENSCWAG00000017887)	LOXL3 (ENSCWAG00000017949)	DOK1 (ENSCWAG00000018157)	M1AP (ENSCWAG00000018209)	SEMA4F (ENSCWAG00000018323)	HK2 (ENSCWAG00000018578) #22	POLE4 (ENSCWAG00000018632) #23	TACR1 (ENSCWAG00000018657) #24	EVA1A (ENSCWAG00000018768) #25	MRPL19 (ENSCWAG00000018789) #26	GCFC2 (ENSCWAG00000018823) #27	LRRTM4 (ENSCWAG00000018997) #28
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Camelidae	ANCESTRAL SPECIES	101	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00940000172635	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24
Arabian camel	MODERN SPECIES	6	MRPL53 (ENSCDRG00005006480)	CCDC142 (ENSCDRG00005006539)	TTC31 (ENSCDRG00005006660)	LBX2 (ENSCDRG00005006852)	PCGF1 (ENSCDRG00005006884)	TLX2 (ENSCDRG00005006934)	DQX1 (ENSCDRG00005006987)	AUP1 (ENSCDRG00005007086)	HTRA2 (ENSCDRG00005007192)	LOXL3 (ENSCDRG00005007320)	DOK1 (ENSCDRG00005007574)	ENSCDRG00005007631	SEMA4F (ENSCDRG00005007723)	ENSCDRG00005008325	ENSCDRG00005008392	HK2 (ENSCDRG00005008433) #22	POLE4 (ENSCDRG00005008557) #23	ENSCDRG00005008611	TACR1 (ENSCDRG00005008644) #24
Alpaca	MODERN SPECIES	1374																HK2 (ENSVPAG00000010798) #22	TACR1 (ENSVPAG00000010799) #24
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Cetacea	ANCESTRAL SPECIES	16	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888.g #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT01100000263908.a	ENSGT00940000154909 #28	ENSGT00940000154447.l #31	ENSGT00940000154447.k.a #31	ENSGT00940000154447.k.b #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888.g #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT01100000263908.a	ENSGT00940000154909 #28	ENSGT00940000154447.l #31	ENSGT00940000154447.k.a #31	ENSGT00940000154447.k.b #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154519.d	ENSGT01000000219921	ENSGT00550000074828.a.g.a
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888.g #23	ENSGT00940000153745.a #24	ENSGT00390000018829.h	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT01100000263908.a	ENSGT00940000154909 #28	ENSGT00940000154447.l #31	ENSGT00940000154447.k.a #31	ENSGT00940000154447.k.b #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154519.d	ENSGT01000000219921
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888.g #23	ENSGT00940000153745.a #24	ENSGT00390000018829.h	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT01100000263908.a	ENSGT00940000154909 #28	ENSGT00940000154447.l #31	ENSGT00940000154447.k.a #31	ENSGT00940000154447.k.b #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154519.d	ENSGT01000000219921
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888.g #23	ENSGT00940000153745.a #24	ENSGT00390000018829.h	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT01100000263908.a	ENSGT00940000154909 #28	ENSGT00940000154447.l #31	ENSGT00940000154447.k.a #31	ENSGT00940000154447.k.b #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154519.d	ENSGT01000000219921
Beluga whale	MODERN SPECIES	61	MOGS (ENSDLEG00000020969)	ENSDLEG00000020971	CCDC142 (ENSDLEG00000020973)	ENSDLEG00000020975	LBX2 (ENSDLEG00000020978)	PCGF1 (ENSDLEG00000020981)	TLX2 (ENSDLEG00000020983)	DQX1 (ENSDLEG00000020987)	AUP1 (ENSDLEG00000020997)	HTRA2 (ENSDLEG00000021003)	LOXL3 (ENSDLEG00000021006)	DOK1 (ENSDLEG00000021013)	ENSDLEG00000021014	ENSDLEG00000021016	SEMA4F (ENSDLEG00000021023)	HK2 (ENSDLEG00000021038) #22	POLE4 (ENSDLEG00000021046) #23	TACR1 (ENSDLEG00000021053) #24	ENSDLEG00000021058	EVA1A (ENSDLEG00000021060) #25	MRPL19 (ENSDLEG00000021065) #26	GCFC2 (ENSDLEG00000021071) #27	ENSDLEG00000015271	LRRTM4 (ENSDLEG00000015285) #28	ENSDLEG00000015290 #31	ENSDLEG00000015308 #31	ENSDLEG00000015371	ENSDLEG00000015387	LRRTM1 (ENSDLEG00000015398)	CTNNA2 (ENSDLEG00000015448)	ENSDLEG00000015731
Narwhal	MODERN SPECIES	305	WBP1 (ENSMMNG00015007928)	MOGS (ENSMMNG00015007876)	MRPL53 (ENSMMNG00015007852)	CCDC142 (ENSMMNG00015007820)	ENSMMNG00015007738	LBX2 (ENSMMNG00015007724)	PCGF1 (ENSMMNG00015007700)	TLX2 (ENSMMNG00015007683)	DQX1 (ENSMMNG00015007668)	AUP1 (ENSMMNG00015007628)	HTRA2 (ENSMMNG00015007588)	LOXL3 (ENSMMNG00015007516)	DOK1 (ENSMMNG00015007456)	M1AP (ENSMMNG00015007398)	SEMA4F (ENSMMNG00015007262)	HK2 (ENSMMNG00015007182) #22	POLE4 (ENSMMNG00015007159) #23	TACR1 (ENSMMNG00015007135) #24	ENSMMNG00015007118	EVA1A (ENSMMNG00015007106) #25	MRPL19 (ENSMMNG00015007076) #26	GCFC2 (ENSMMNG00015006927) #27	ENSMMNG00015006912	LRRTM4 (ENSMMNG00015006892) #28	ENSMMNG00015006860 #31	ENSMMNG00015006837 #31	ENSMMNG00015006817 #31	LRRTM1 (ENSMMNG00015006791)	CTNNA2 (ENSMMNG00015006714)	ENSMMNG00015006649	ENSMMNG00015006629
Vaquita	MODERN SPECIES	4	WBP1 (ENSPSNG00000014679)	MOGS (ENSPSNG00000014780)	MRPL53 (ENSPSNG00000014967)	CCDC142 (ENSPSNG00000015097)	ENSPSNG00000015157	LBX2 (ENSPSNG00000015226)	PCGF1 (ENSPSNG00000015284)	TLX2 (ENSPSNG00000015428)	DQX1 (ENSPSNG00000015484)	AUP1 (ENSPSNG00000015627)	HTRA2 (ENSPSNG00000015690)	LOXL3 (ENSPSNG00000015770)	DOK1 (ENSPSNG00000015857)	M1AP (ENSPSNG00000015975)	SEMA4F (ENSPSNG00000016121)	HK2 (ENSPSNG00000016587) #22	ENSPSNG00000016674 #23	TACR1 (ENSPSNG00000016752) #24	ENSPSNG00000016856	ENSPSNG00000016957	ENSPSNG00000016969	EVA1A (ENSPSNG00000017006) #25	MRPL19 (ENSPSNG00000017053) #26	LRRTM4 (ENSPSNG00000017131) #28	ENSPSNG00000017262 #31	ENSPSNG00000017334 #31	ENSPSNG00000017391 #31	CTNNA2 (ENSPSNG00000017625)	LRRTM1 (ENSPSNG00000018662)	ENSPSNG00000007264	ENSPSNG00000007353
Dolphin	MODERN SPECIES	6484																HK2 (ENSTTRG00000006218) #22
Sperm whale	MODERN SPECIES	975																HK2 (ENSPCTG00005020804) #22
Blue whale	MODERN SPECIES	4	INO80B (ENSBMSG00010012878)	WBP1 (ENSBMSG00010012930)	MOGS (ENSBMSG00010012952)	MRPL53 (ENSBMSG00010012982)	CCDC142 (ENSBMSG00010012991)	LBX2 (ENSBMSG00010013027)	PCGF1 (ENSBMSG00010013038)	TLX2 (ENSBMSG00010013055)	DQX1 (ENSBMSG00010013063)	AUP1 (ENSBMSG00010013082)	HTRA2 (ENSBMSG00010013092)	LOXL3 (ENSBMSG00010013154)	DOK1 (ENSBMSG00010013198)	M1AP (ENSBMSG00010013224)	SEMA4F (ENSBMSG00010013318)	HK2 (ENSBMSG00010013404) #22	ENSBMSG00010013428 #23	ENSBMSG00010013461	ENSBMSG00010013474	ENSBMSG00010013482	EGR4 (ENSBMSG00010013491)	FBXO41 (ENSBMSG00010013510)	ENSBMSG00010013530	CCT7 (ENSBMSG00010013558)	PRADC1 (ENSBMSG00010013595)	SMYD5 (ENSBMSG00010013610)	NOTO (ENSBMSG00010013622)	ENSBMSG00010013631	ENSBMSG00010013646	SFXN5 (ENSBMSG00010013670)	EMX1 (ENSBMSG00010013704)
Pecora	ANCESTRAL SPECIES	5	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Percora_a	ANCESTRAL SPECIES	13	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Bovidae	ANCESTRAL SPECIES	5	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Bovinae	ANCESTRAL SPECIES	4	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Bos	ANCESTRAL SPECIES	5	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Bos_a	ANCESTRAL SPECIES	6	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Domestic yak	MODERN SPECIES	28	RTKN (ENSBGRG00000007495)	WBP1 (ENSBGRG00000007333)	MOGS (ENSBGRG00000007161)	MRPL53 (ENSBGRG00000007111)	CCDC142 (ENSBGRG00000006997)	LBX2 (ENSBGRG00000006957)	PCGF1 (ENSBGRG00000006913)	TLX2 (ENSBGRG00000006889)	DQX1 (ENSBGRG00000006864)	AUP1 (ENSBGRG00000006771)	HTRA2 (ENSBGRG00000006711)	LOXL3 (ENSBGRG00000006598)	DOK1 (ENSBGRG00000006564)	M1AP (ENSBGRG00000006523)	SEMA4F (ENSBGRG00000006275)	HK2 (ENSBGRG00000006169) #22	POLE4 (ENSBGRG00000006127) #23	TACR1 (ENSBGRG00000006090) #24	FHL2 (ENSBGRG00000006023)	C2orf49 (ENSBGRG00000005902)	TGFBRAP1 (ENSBGRG00000005800)	GPR45 (ENSBGRG00000005783)	MRPS9 (ENSBGRG00000005733)	ENSBGRG00000005713	TMEM182 (ENSBGRG00000005547)	MFSD9 (ENSBGRG00000005489)	SLC9A2 (ENSBGRG00000005356)	SLC9A4 (ENSBGRG00000005286)	IL18RAP (ENSBGRG00000005200)	IL18R1 (ENSBGRG00000005129)	IL1RL1 (ENSBGRG00000005024)
Wild yak	MODERN SPECIES	1960											HTRA2 (ENSBMUG00000013232)	LOXL3 (ENSBMUG00000013386)	DOK1 (ENSBMUG00000013447)	M1AP (ENSBMUG00000013500)	SEMA4F (ENSBMUG00000013553)	HK2 (ENSBMUG00000013591) #22	POLE4 (ENSBMUG00000013607) #23	TACR1 (ENSBMUG00000013640) #24
Bos_b	ANCESTRAL SPECIES	9	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a	ENSGT01090000259985.b.a.a.a
Cow	MODERN SPECIES	2	INO80B (ENSBTAG00000001840)	WBP1 (ENSBTAG00000001843)	MOGS (ENSBTAG00000001844)	MRPL53 (ENSBTAG00000016599)	CCDC142 (ENSBTAG00000016600)	LBX2 (ENSBTAG00000016602)	PCGF1 (ENSBTAG00000016606)	TLX2 (ENSBTAG00000051550)	DQX1 (ENSBTAG00000016609)	AUP1 (ENSBTAG00000020123)	HTRA2 (ENSBTAG00000020124)	LOXL3 (ENSBTAG00000018578)	DOK1 (ENSBTAG00000018579)	M1AP (ENSBTAG00000006988)	SEMA4F (ENSBTAG00000006989)	HK2 (ENSBTAG00000013108) #22	POLE4 (ENSBTAG00000017189) #23	TACR1 (ENSBTAG00000015575) #24	FHL2 (ENSBTAG00000001086)	C11H2orf49 (ENSBTAG00000012332)	TGFBRAP1 (ENSBTAG00000021731)	GPR45 (ENSBTAG00000048142)	MRPS9 (ENSBTAG00000006150)	POU3F3 (ENSBTAG00000050523)	TMEM182 (ENSBTAG00000038462)	MFSD9 (ENSBTAG00000001714)	SLC9A2 (ENSBTAG00000001706)	SLC9A4 (ENSBTAG00000024075)	IL18RAP (ENSBTAG00000033748)	IL18R1 (ENSBTAG00000001034)	IL1RL1 (ENSBTAG00000018571)
Hybrid Bos Indicus	MODERN SPECIES	2	C2orf81 (ENSBIXG00005011144)	INO80B (ENSBIXG00005011190)	WBP1 (ENSBIXG00005011228)	MOGS (ENSBIXG00005011279)	CCDC142 (ENSBIXG00005001074)	LBX2 (ENSBIXG00005011323)	PCGF1 (ENSBIXG00005007100)	TLX2 (ENSBIXG00005011332)	DQX1 (ENSBIXG00005011357)	AUP1 (ENSBIXG00005011386)	HTRA2 (ENSBIXG00005000462)	LOXL3 (ENSBIXG00005011540)	DOK1 (ENSBIXG00005011590)	M1AP (ENSBIXG00005011626)	SEMA4F (ENSBIXG00005011754)	HK2 (ENSBIXG00005001173) #22	POLE4 (ENSBIXG00005011846) #23	TACR1 (ENSBIXG00005011862) #24	FHL2 (ENSBIXG00005001201)	C2orf49 (ENSBIXG00005011970)	ENSBIXG00005001221	TGFBRAP1 (ENSBIXG00005001243)	GPR45 (ENSBIXG00005001249)	MRPS9 (ENSBIXG00005012091)	POU3F3 (ENSBIXG00005012117)	TMEM182 (ENSBIXG00005012268)	MFSD9 (ENSBIXG00005012287)	SLC9A2 (ENSBIXG00005005827)	SLC9A4 (ENSBIXG00005001305)	IL18RAP (ENSBIXG00005001308)	IL18R1 (ENSBIXG00005012403)
American bison	MODERN SPECIES	3359	RTKN (ENSBBBG00000020523)	INO80B (ENSBBBG00000020532)	WBP1 (ENSBBBG00000020554)	ENSBBBG00000020580	MRPL53 (ENSBBBG00000000504)	LBX2 (ENSBBBG00000020613)	PCGF1 (ENSBBBG00000020669)	TLX2 (ENSBBBG00000020678)	DQX1 (ENSBBBG00000020697)	AUP1 (ENSBBBG00000008783)	HTRA2 (ENSBBBG00000005606)	LOXL3 (ENSBBBG00000020930)	DOK1 (ENSBBBG00000005634)	M1AP (ENSBBBG00000005650)	SEMA4F (ENSBBBG00000021134)	HK2 (ENSBBBG00000021179) #22	TACR1 (ENSBBBG00000007280) #24	FHL2 (ENSBBBG00000021230)	C2orf49 (ENSBBBG00000021257)	TGFBRAP1 (ENSBBBG00000007633)	GPR45 (ENSBBBG00000021287)	MRPS9 (ENSBBBG00000021295)	ENSBBBG00000021300	TMEM182 (ENSBBBG00000021321)	ENSBBBG00000008785	SLC9A2 (ENSBBBG00000021364)	SLC9A4 (ENSBBBG00000021388)	IL18RAP (ENSBBBG00000021455)	IL18R1 (ENSBBBG00000008404)	IL1RL1 (ENSBBBG00000021510)	IL1RL2 (ENSBBBG00000021531)
Caprinae	ANCESTRAL SPECIES	9	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440.a.a	ENSGT00390000009871	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a.f #24	ENSGT00940000153745.a.e #24	ENSGT00950000183028.a.a.a	ENSGT00390000007488	ENSGT00530000063596.A	ENSGT00950000183001.a.b.b	ENSGT00390000011204	ENSGT00940000163665	ENSGT00390000017581.b	ENSGT00940000159390	ENSGT00940000156807	ENSGT00940000160774	ENSGT01090000259985.b.b.a.b	ENSGT01090000259985.b.b.a.a
Rambouillet Sheep	MODERN SPECIES	19	WBP1 (ENSOARG00020001676)	MOGS (ENSOARG00020001726)	MRPL53 (ENSOARG00020001748)	CCDC142 (ENSOARG00020001761)	LBX2 (ENSOARG00020001779)	PCGF1 (ENSOARG00020001792)	TLX2 (ENSOARG00020001811)	DQX1 (ENSOARG00020001820)	AUP1 (ENSOARG00020001842)	HTRA2 (ENSOARG00020001856)	LOXL3 (ENSOARG00020001909)	DOK1 (ENSOARG00020001996)	M1AP (ENSOARG00020002029)	ENSOARG00020002088	SEMA4F (ENSOARG00020002115)	HK2 (ENSOARG00020002205) #22	TACR1 (ENSOARG00020002316) #24	ENSOARG00020002342	FHL2 (ENSOARG00020002357)	C2orf49 (ENSOARG00020002379)	TGFBRAP1 (ENSOARG00020002401)	GPR45 (ENSOARG00020002442)	MRPS9 (ENSOARG00020002447)	POU3F3 (ENSOARG00020002461)	ENSOARG00020002475	SLC9A2 (ENSOARG00020002529)	SLC9A4 (ENSOARG00020002556)	IL18RAP (ENSOARG00020002600)	IL18R1 (ENSOARG00020002611)	IL1RL1 (ENSOARG00020002640)	IL1RL2 (ENSOARG00020002664)
Goat	MODERN SPECIES	2	ENSCHIG00000024139	WBP1 (ENSCHIG00000021514)	MOGS (ENSCHIG00000025527)	ENSCHIG00000009415	CCDC142 (ENSCHIG00000007562)	LBX2 (ENSCHIG00000022801)	PCGF1 (ENSCHIG00000009314)	TLX2 (ENSCHIG00000024679)	DQX1 (ENSCHIG00000019357)	AUP1 (ENSCHIG00000017612)	HTRA2 (ENSCHIG00000012698)	LOXL3 (ENSCHIG00000023130)	DOK1 (ENSCHIG00000026334)	M1AP (ENSCHIG00000016861)	SEMA4F (ENSCHIG00000016847)	HK2 (ENSCHIG00000012393) #22	POLE4 (ENSCHIG00000023864) #23	ENSCHIG00000021615 #24	ENSCHIG00000005412 #24	FHL2 (ENSCHIG00000025140)	C2orf49 (ENSCHIG00000011684)	TGFBRAP1 (ENSCHIG00000015202)	GPR45 (ENSCHIG00000010870)	ENSCHIG00000025798	MRPS9 (ENSCHIG00000022475)	POU3F3 (ENSCHIG00000010081)	TMEM182 (ENSCHIG00000021627)	MFSD9 (ENSCHIG00000024665)	SLC9A2 (ENSCHIG00000017048)	SLC9A4 (ENSCHIG00000003162)	IL18RAP (ENSCHIG00000019718)
Siberian musk deer	MODERN SPECIES	245	INO80B (ENSMMSG00000014928)	WBP1 (ENSMMSG00000014947)	MOGS (ENSMMSG00000015016)	ENSMMSG00000015068	CCDC142 (ENSMMSG00000015083)	LBX2 (ENSMMSG00000015157)	PCGF1 (ENSMMSG00000015168)	TLX2 (ENSMMSG00000015197)	DQX1 (ENSMMSG00000015218)	AUP1 (ENSMMSG00000015258)	HTRA2 (ENSMMSG00000015328)	LOXL3 (ENSMMSG00000015398)	DOK1 (ENSMMSG00000015642)	M1AP (ENSMMSG00000015731)	SEMA4F (ENSMMSG00000015865)	HK2 (ENSMMSG00000000268) #22	ENSMMSG00000000316 #23	TACR1 (ENSMMSG00000000340) #24	FHL2 (ENSMMSG00000000375)	C2orf49 (ENSMMSG00000000414)	TGFBRAP1 (ENSMMSG00000000447)	GPR45 (ENSMMSG00000000484)	MRPS9 (ENSMMSG00000000500)	POU3F3 (ENSMMSG00000000528)	ENSMMSG00000000543	TMEM182 (ENSMMSG00000000564)	MFSD9 (ENSMMSG00000000598)	SLC9A2 (ENSMMSG00000000626)	SLC9A4 (ENSMMSG00000000659)	IL18RAP (ENSMMSG00000000698)	IL18R1 (ENSMMSG00000000733)
Yarkand deer	MODERN SPECIES	2	RTKN (ENSCHYG00000007780)	WBP1 (ENSCHYG00000007661)	MOGS (ENSCHYG00000007568)	MRPL53 (ENSCHYG00000007542)	CCDC142 (ENSCHYG00000007437)	LBX2 (ENSCHYG00000007410)	PCGF1 (ENSCHYG00000007361)	TLX2 (ENSCHYG00000007328)	DQX1 (ENSCHYG00000007259)	AUP1 (ENSCHYG00000007203)	HTRA2 (ENSCHYG00000007157)	LOXL3 (ENSCHYG00000007030)	DOK1 (ENSCHYG00000006971)	M1AP (ENSCHYG00000006904)	SEMA4F (ENSCHYG00000006815)	HK2 (ENSCHYG00000006578) #22	POLE4 (ENSCHYG00000006517) #23	TACR1 (ENSCHYG00000006500) #24	FHL2 (ENSCHYG00000017139)	ENSCHYG00000017002	TGFBRAP1 (ENSCHYG00000016916)	GPR45 (ENSCHYG00000016902)	MRPS9 (ENSCHYG00000016692)	ENSCHYG00000016649	TMEM182 (ENSCHYG00000016473)	MFSD9 (ENSCHYG00000016403)	SLC9A2 (ENSCHYG00000016251)	SLC9A4 (ENSCHYG00000016105)	IL18RAP (ENSCHYG00000015955)	IL18R1 (ENSCHYG00000015824)	IL1RL1 (ENSCHYG00000015743)
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Equus	ANCESTRAL SPECIES	7	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000180261	ENSGT00940000154447.x #31	ENSGT00940000154447.w #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000165681
Donkey	MODERN SPECIES	26	MOGS (ENSEASG00005010607)	MRPL53 (ENSEASG00005034135)	CCDC142 (ENSEASG00005010620)	TTC31 (ENSEASG00005010632)	LBX2 (ENSEASG00005032919)	PCGF1 (ENSEASG00005010644)	TLX2 (ENSEASG00005010649)	DQX1 (ENSEASG00005010654)	AUP1 (ENSEASG00005010660)	HTRA2 (ENSEASG00005010665)	LOXL3 (ENSEASG00005010672)	DOK1 (ENSEASG00005010675)	M1AP (ENSEASG00005010682)	ENSEASG00005010687	ENSEASG00005035097	HK2 (ENSEASG00005010694) #22	POLE4 (ENSEASG00005010709) #23	TACR1 (ENSEASG00005010713) #24	EVA1A (ENSEASG00005030049) #25	MRPL19 (ENSEASG00005010729) #26	GCFC2 (ENSEASG00005010738) #27	ENSEASG00005034159	LRRTM4 (ENSEASG00005010753) #28	ENSEASG00005010754	ENSEASG00005010755 #31	ENSEASG00005010756 #31	CTNNA2 (ENSEASG00005001230)	ENSEASG00005001226	SUCLG1 (ENSEASG00005001258)	DNAH6 (ENSEASG00005001279)	TRABD2A (ENSEASG00005001397)
Horse	MODERN SPECIES	6	WDR54 (ENSECAG00000018783)	RTKN (ENSECAG00000010876)	WBP1 (ENSECAG00000008519)	MOGS (ENSECAG00000002048)	INO80B (ENSECAG00000010193)	MRPL53 (ENSECAG00000026983)	CCDC142 (ENSECAG00000019969)	TTC31 (ENSECAG00000016472)	PCGF1 (ENSECAG00000011360)	DQX1 (ENSECAG00000023896)	AUP1 (ENSECAG00000013531)	HTRA2 (ENSECAG00000000517)	DOK1 (ENSECAG00000022646)	LOXL3 (ENSECAG00000000373)	SEMA4F (ENSECAG00000010510)	HK2 (ENSECAG00000021905) #22	POLE4 (ENSECAG00000021745) #23	TACR1 (ENSECAG00000017150) #24	ENSECAG00000038865 #25	MRPL19 (ENSECAG00000011079) #26	GCFC2 (ENSECAG00000000453) #27	LRRTM4 (ENSECAG00000024042) #28	ENSECAG00000028131	ENSECAG00000046174 #31	ENSECAG00000009200 #31	ENSECAG00000018356 #31	LRRTM1 (ENSECAG00000008983)	CTNNA2 (ENSECAG00000024444)	ENSECAG00000021344	ENSECAG00000052814	ENSECAG00000046045
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160433.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007
Megabat	MODERN SPECIES	3389	WBP1 (ENSPVAG00000024185)	MOGS (ENSPVAG00000013957)	MRPL53 (ENSPVAG00000013958)	CCDC142 (ENSPVAG00000013959)	TTC31 (ENSPVAG00000013960)	LBX2 (ENSPVAG00000013961)	PCGF1 (ENSPVAG00000013962)	TLX2 (ENSPVAG00000013963)	DQX1 (ENSPVAG00000013964)	AUP1 (ENSPVAG00000013968)	HTRA2 (ENSPVAG00000013974)	LOXL3 (ENSPVAG00000013979)	DOK1 (ENSPVAG00000013984)	M1AP (ENSPVAG00000013987)	SEMA4F (ENSPVAG00000013988)	HK2 (ENSPVAG00000013995) #22
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.u #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160433.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
Microbat	MODERN SPECIES	1380															ENSMLUG00000026106	HK2 (ENSMLUG00000009011) #22	POLE4 (ENSMLUG00000009041) #23	ENSMLUG00000006380	TACR1 (ENSMLUG00000009059) #24	MRPL19 (ENSMLUG00000012774) #26	ENSMLUG00000012780 #27
Greater horseshoe bat	MODERN SPECIES	4	MOGS (ENSRFEG00010007342)	MRPL53 (ENSRFEG00010007306)	CCDC142 (ENSRFEG00010007275)	TTC31 (ENSRFEG00010007086)	LBX2 (ENSRFEG00010007040)	PCGF1 (ENSRFEG00010006900)	TLX2 (ENSRFEG00010006842)	DQX1 (ENSRFEG00010006764)	AUP1 (ENSRFEG00010006693)	HTRA2 (ENSRFEG00010006592)	LOXL3 (ENSRFEG00010006428)	DOK1 (ENSRFEG00010006313)	M1AP (ENSRFEG00010006231)	SEMA4F (ENSRFEG00010005977)	ENSRFEG00010005892	HK2 (ENSRFEG00010005850) #22	ENSRFEG00010005804 #23	TACR1 (ENSRFEG00010005771) #24	EVA1A (ENSRFEG00010005742) #25	ENSRFEG00010005726	MRPL19 (ENSRFEG00010005699) #26	GCFC2 (ENSRFEG00010005629) #27	ENSRFEG00010005599	LRRTM4 (ENSRFEG00010005568) #28	ENSRFEG00010005543	ENSRFEG00010014244 #31	ENSRFEG00010014177 #31	LRRTM1 (ENSRFEG00010013989)	CTNNA2 (ENSRFEG00010013591)	ENSRFEG00010013508	SUCLG1 (ENSRFEG00010013453)
Carnivora	ANCESTRAL SPECIES	19	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Felidae	ANCESTRAL SPECIES	3	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00390000006922.m.b.a.d.db	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154466.z	ENSGT00940000154909 #28	ENSGT00390000004322.a.b.j.f.a.a	ENSGT00940000154447 #31	ENSGT00940000162300	ENSGT00940000161705	ENSGT00940000154818.a.b	ENSGT00940000156351	ENSGT00940000154761
Panthera	ANCESTRAL SPECIES	2	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00390000006922.m.b.a.d.db	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154466.z	ENSGT00940000154909 #28	ENSGT00940000154447.q #31	ENSGT00390000004322.a.b.j.f.a.a	ENSGT00940000154447.r #31	ENSGT00940000162300	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154818.a.b
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00390000006922.m.b.a.d.db	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154466.z	ENSGT00940000154909 #28	ENSGT00390000004322.a.b.j.f.a.a	ENSGT00940000154447.r #31	ENSGT00940000162300	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761
lion	MODERN SPECIES	3	WBP1 (ENSPLOG00000006399)	MOGS (ENSPLOG00000006353)	MRPL53 (ENSPLOG00000006340)	CCDC142 (ENSPLOG00000006196)	TTC31 (ENSPLOG00000006066)	LBX2 (ENSPLOG00000003429)	PCGF1 (ENSPLOG00000003415)	TLX2 (ENSPLOG00000003401)	DQX1 (ENSPLOG00000003390)	AUP1 (ENSPLOG00000003330)	HTRA2 (ENSPLOG00000003292)	LOXL3 (ENSPLOG00000003256)	DOK1 (ENSPLOG00000003221)	M1AP (ENSPLOG00000003195)	SEMA4F (ENSPLOG00000003133)	HK2 (ENSPLOG00000003095) #22	ENSPLOG00000003085	POLE4 (ENSPLOG00000003077) #23	TACR1 (ENSPLOG00000003062) #24	EVA1A (ENSPLOG00000003025) #25	MRPL19 (ENSPLOG00000003007) #26	GCFC2 (ENSPLOG00000002932) #27	ENSPLOG00000002860	LRRTM4 (ENSPLOG00000002833) #28	ENSPLOG00000002800	ENSPLOG00000002766 #31	ENSPLOG00000002744	LRRTM1 (ENSPLOG00000002714)	CTNNA2 (ENSPLOG00000002544)	ENSPLOG00000002342	ENSPLOG00000002329
leopard	MODERN SPECIES		MOGS (ENSPPRG00000008070)	MRPL53 (ENSPPRG00000008059)	CCDC142 (ENSPPRG00000008048)	TTC31 (ENSPPRG00000008019)	LBX2 (ENSPPRG00000007975)	PCGF1 (ENSPPRG00000007967)	TLX2 (ENSPPRG00000007958)	DQX1 (ENSPPRG00000007947)	AUP1 (ENSPPRG00000007938)	HTRA2 (ENSPPRG00000007923)	LOXL3 (ENSPPRG00000007886)	DOK1 (ENSPPRG00000007779)	M1AP (ENSPPRG00000007750)	SEMA4F (ENSPPRG00000007712)	ENSPPRG00000007686	HK2 (ENSPPRG00000007681) #22	ENSPPRG00000020433	POLE4 (ENSPPRG00000007674) #23	TACR1 (ENSPPRG00000007672) #24	EVA1A (ENSPPRG00000007663) #25	MRPL19 (ENSPPRG00000007656) #26	GCFC2 (ENSPPRG00000007643) #27	ENSPPRG00000020405	LRRTM4 (ENSPPRG00000007603) #28	ENSPPRG00000007590	ENSPPRG00000007566 #31	ENSPPRG00000007546 #31	ENSPPRG00000007531	LRRTM1 (ENSPPRG00000020381)	CTNNA2 (ENSPPRG00000007522)	ENSPPRG00000007459
Tiger	MODERN SPECIES	184	INO80B (ENSPTIG00000008538)	WBP1 (ENSPTIG00000009727)	MOGS (ENSPTIG00000011139)	MRPL53 (ENSPTIG00000011649)	CCDC142 (ENSPTIG00000012161)	TTC31 (ENSPTIG00000013616)	LBX2 (ENSPTIG00000015332)	PCGF1 (ENSPTIG00000015872)	DQX1 (ENSPTIG00000016302)	AUP1 (ENSPTIG00000018180)	HTRA2 (ENSPTIG00000018947)	LOXL3 (ENSPTIG00000019481)	DOK1 (ENSPTIG00000021841)	M1AP (ENSPTIG00000022013)	SEMA4F (ENSPTIG00000007191)	HK2 (ENSPTIG00000010814) #22	TACR1 (ENSPTIG00000012440) #24	EVA1A (ENSPTIG00000012899) #25	MRPL19 (ENSPTIG00000013270) #26	GCFC2 (ENSPTIG00000013932) #27	ENSPTIG00000004941	LRRTM4 (ENSPTIG00000016381) #28	ENSPTIG00000017159 #31	ENSPTIG00000018304 #31	ENSPTIG00000019045	CTNNA2 (ENSPTIG00000019493)	ENSPTIG00000005117	SUCLG1 (ENSPTIG00000000826)	DNAH6 (ENSPTIG00000005176)	TRABD2A (ENSPTIG00000017231)
Cat	MODERN SPECIES	2	INO80B (ENSFCAG00000018656)	WBP1 (ENSFCAG00000032612)	MOGS (ENSFCAG00000031104)	MRPL53 (ENSFCAG00000036033)	CCDC142 (ENSFCAG00000007152)	TTC31 (ENSFCAG00000007153)	LBX2 (ENSFCAG00000007155)	PCGF1 (ENSFCAG00000035442)	TLX2 (ENSFCAG00000033678)	DQX1 (ENSFCAG00000028272)	AUP1 (ENSFCAG00000007156)	HTRA2 (ENSFCAG00000007157)	LOXL3 (ENSFCAG00000007158)	DOK1 (ENSFCAG00000007159)	M1AP (ENSFCAG00000026985)	HK2 (ENSFCAG00000005980) #22	ENSFCAG00000022436	POLE4 (ENSFCAG00000039901) #23	TACR1 (ENSFCAG00000005984) #24	EVA1A (ENSFCAG00000045341) #25	MRPL19 (ENSFCAG00000026955) #26	GCFC2 (ENSFCAG00000018337) #27	ENSFCAG00000028961	LRRTM4 (ENSFCAG00000029130) #28	ENSFCAG00000047596	ENSFCAG00000037265 #31	ENSFCAG00000035055 #31	CTNNA2 (ENSFCAG00000028296)	LRRTM1 (ENSFCAG00000022997)	ENSFCAG00000039414	ENSFCAG00000031148
Caniformia	ANCESTRAL SPECIES	18	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Canidae	ANCESTRAL SPECIES	25	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000164757	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.s	ENSGT00940000162300.t	ENSGT01030000234543.A.a	ENSGT00390000009819.a.b.a.a.a.a.a.eb.b	ENSGT00940000161705	ENSGT00940000164757	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805
Dingo	MODERN SPECIES	223	MOGS (ENSCAFG00020014062)	MRPL53 (ENSCAFG00020014067)	CCDC142 (ENSCAFG00020014070)	TTC31 (ENSCAFG00020014072)	LBX2 (ENSCAFG00020014076)	PCGF1 (ENSCAFG00020014078)	TLX2 (ENSCAFG00020014080)	DQX1 (ENSCAFG00020014095)	HTRA2 (ENSCAFG00020014141)	LOXL3 (ENSCAFG00020014177)	DOK1 (ENSCAFG00020014178)	M1AP (ENSCAFG00020014181)	ENSCAFG00020014185	ENSCAFG00020014188	ENSCAFG00020014192	HK2 (ENSCAFG00020014194) #22	ENSCAFG00020014217 #23	TACR1 (ENSCAFG00020014225) #24	EVA1A (ENSCAFG00020014233) #25	MRPL19 (ENSCAFG00020014234) #26	GCFC2 (ENSCAFG00020014238) #27	LRRTM4 (ENSCAFG00020014262) #28	ENSCAFG00020014272	ENSCAFG00020014276	ENSCAFG00020014297	ENSCAFG00020014300	LRRTM1 (ENSCAFG00020014306)	CTNNA2 (ENSCAFG00020014334)	ENSCAFG00020014527	ENSCAFG00020014532	ENSCAFG00020014539
Dog	MODERN SPECIES	8	MOGS (ENSCAFG00845019226)	CCDC142 (ENSCAFG00845019021)	TTC31 (ENSCAFG00845018926)	LBX2 (ENSCAFG00845018879)	PCGF1 (ENSCAFG00845018818)	TLX2 (ENSCAFG00845018781)	DQX1 (ENSCAFG00845018690)	AUP1 (ENSCAFG00845018596)	HTRA2 (ENSCAFG00845018463)	LOXL3 (ENSCAFG00845018096)	DOK1 (ENSCAFG00845017897)	ENSCAFG00845017854	M1AP (ENSCAFG00845017680)	SEMA4F (ENSCAFG00845017211)	ENSCAFG00845016926	HK2 (ENSCAFG00845016792) #22	POLE4 (ENSCAFG00845016702) #23	TACR1 (ENSCAFG00845016647) #24	EVA1A (ENSCAFG00845016600) #25	MRPL19 (ENSCAFG00845016536) #26	GCFC2 (ENSCAFG00845016265) #27	LRRTM4 (ENSCAFG00845016025) #28	REG3A (ENSCAFG00845015870)	ENSCAFG00845015791	ENSCAFG00845015711	LRRTM1 (ENSCAFG00845015691)	ENSCAFG00845015338	ENSCAFG00845015074	ENSCAFG00845014940	SUCLG1 (ENSCAFG00845014907)	ENSCAFG00845014884
Red fox	MODERN SPECIES	16	MOGS (ENSVVUG00000004467)	MRPL53 (ENSVVUG00000004459)	CCDC142 (ENSVVUG00000004452)	TTC31 (ENSVVUG00000004446)	LBX2 (ENSVVUG00000004440)	PCGF1 (ENSVVUG00000004351)	TLX2 (ENSVVUG00000004334)	DQX1 (ENSVVUG00000004178)	HTRA2 (ENSVVUG00000004163)	LOXL3 (ENSVVUG00000004157)	DOK1 (ENSVVUG00000004152)	ENSVVUG00000004146	ENSVVUG00000004139	M1AP (ENSVVUG00000004123)	SEMA4F (ENSVVUG00000004060)	HK2 (ENSVVUG00000004014) #22	POLE4 (ENSVVUG00000003999) #23	TACR1 (ENSVVUG00000003991) #24	ENSVVUG00000003969	EVA1A (ENSVVUG00000003961) #25	MRPL19 (ENSVVUG00000003947) #26	GCFC2 (ENSVVUG00000003380) #27	LRRTM4 (ENSVVUG00000003318) #28	ENSVVUG00000003303	ENSVVUG00000003296	ENSVVUG00000003267	LRRTM1 (ENSVVUG00000003240)	CTNNA2 (ENSVVUG00000003221)	ENSVVUG00000003155	SUCLG1 (ENSVVUG00000003108)	DNAH6 (ENSVVUG00000002546)
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171
Mustelinae	ANCESTRAL SPECIES	16	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000163007	ENSGT00510000047171	ENSGT00940000157038
American mink	MODERN SPECIES	8	WBP1 (ENSNVIG00000020269)	MOGS (ENSNVIG00000020242)	ENSNVIG00000020241	CCDC142 (ENSNVIG00000020220)	TTC31 (ENSNVIG00000020198)	LBX2 (ENSNVIG00000020189)	PCGF1 (ENSNVIG00000020165)	TLX2 (ENSNVIG00000020162)	DQX1 (ENSNVIG00000020127)	AUP1 (ENSNVIG00000020097)	HTRA2 (ENSNVIG00000020077)	LOXL3 (ENSNVIG00000020031)	DOK1 (ENSNVIG00000019993)	M1AP (ENSNVIG00000019938)	SEMA4F (ENSNVIG00000019888)	HK2 (ENSNVIG00000019862) #22	POLE4 (ENSNVIG00000019850) #23	TACR1 (ENSNVIG00000019835) #24	EVA1A (ENSNVIG00000019826) #25	MRPL19 (ENSNVIG00000019794) #26	GCFC2 (ENSNVIG00000019670) #27	LRRT4 (ENSNVIG00000019637) #28	ENSNVIG00000019606	ENSNVIG00000019589	LRRTM1 (ENSNVIG00000019580)	CTNNA2 (ENSNVIG00000019316)	SUCLG1 (ENSNVIG00000019244)	DNAH6 (ENSNVIG00000019022)	TRABD2A (ENSNVIG00000018979)	TMSB10 (ENSNVIG00000018969)	KCMF1 (ENSNVIG00000018936)
Ferret	MODERN SPECIES	169	RTKN (ENSMPUG00000007924)	INO80B (ENSMPUG00000008017)	WBP1 (ENSMPUG00000008020)	MOGS (ENSMPUG00000008051)	MRPL53 (ENSMPUG00000008055)	CCDC142 (ENSMPUG00000008076)	TTC31 (ENSMPUG00000008092)	PCGF1 (ENSMPUG00000008098)	TLX2 (ENSMPUG00000008116)	AUP1 (ENSMPUG00000008123)	HTRA2 (ENSMPUG00000008134)	LOXL3 (ENSMPUG00000008143)	DOK1 (ENSMPUG00000008292)	M1AP (ENSMPUG00000008326)	SEMA4F (ENSMPUG00000008332)	HK2 (ENSMPUG00000008342) #22	POLE4 (ENSMPUG00000008356) #23	TACR1 (ENSMPUG00000008365) #24	ENSMPUG00000018835	EVA1A (ENSMPUG00000008405) #25	MRPL19 (ENSMPUG00000008410) #26	GCFC2 (ENSMPUG00000008412) #27	LRRTM4 (ENSMPUG00000008512) #28	ENSMPUG00000008521 #31	ENSMPUG00000008526 #31	ENSMPUG00000008534	LRRTM1 (ENSMPUG00000018841)	ENSMPUG00000008539	SUCLG1 (ENSMPUG00000008566)	DNAH6 (ENSMPUG00000008574)	TRABD2A (ENSMPUG00000008622)
Ursidae	ANCESTRAL SPECIES	9	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300	ENSGT00940000154447 #31	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000156351	ENSGT00940000154761	ENSGT00940000162805	ENSGT00940000165681	ENSGT00510000047171
Ursus	ANCESTRAL SPECIES	55	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000162300.n	ENSGT00940000162300.m	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000154761	ENSGT00510000047171	ENSGT00940000157038	ENSGT00530000064712
Polar bear	MODERN SPECIES	223	WBP1 (ENSUMAG00000001560)	MOGS (ENSUMAG00000001571)	MRPL53 (ENSUMAG00000001594)	CCDC142 (ENSUMAG00000001600)	TTC31 (ENSUMAG00000001617)	LBX2 (ENSUMAG00000001631)	PCGF1 (ENSUMAG00000001647)	TLX2 (ENSUMAG00000001664)	DQX1 (ENSUMAG00000001677)	AUP1 (ENSUMAG00000001752)	HTRA2 (ENSUMAG00000001761)	LOXL3 (ENSUMAG00000001783)	DOK1 (ENSUMAG00000001789)	M1AP (ENSUMAG00000001793)	SEMA4F (ENSUMAG00000001826)	HK2 (ENSUMAG00000002381) #22	TACR1 (ENSUMAG00000005897) #24	EVA1A (ENSUMAG00000005913) #25	MRPL19 (ENSUMAG00000005915) #26	GCFC2 (ENSUMAG00000005924) #27	LRRTM4 (ENSUMAG00000005957) #28	ENSUMAG00000006014	ENSUMAG00000006019	ENSUMAG00000006060	LRRTM1 (ENSUMAG00000006088)	ENSUMAG00000006122	ENSUMAG00000006177	SUCLG1 (ENSUMAG00000006187)	DNAH6 (ENSUMAG00000006234)	KCMF1 (ENSUMAG00000006381)	TCF7L1 (ENSUMAG00000006395)
American black bear	MODERN SPECIES	2034																HK2 (ENSUAMG00000024329) #22	ENSUAMG00000024328	POLE4 (ENSUAMG00000024327) #23	TACR1 (ENSUAMG00000024326) #24
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	14	WBP1 (ENSAMEG00000017241)	MOGS (ENSAMEG00000030032)	MRPL53 (ENSAMEG00000017230)	CCDC142 (ENSAMEG00000017225)	TTC31 (ENSAMEG00000017223)	LBX2 (ENSAMEG00000017222)	PCGF1 (ENSAMEG00000017212)	TLX2 (ENSAMEG00000017209)	DQX1 (ENSAMEG00000017193)	AUP1 (ENSAMEG00000017180)	HTRA2 (ENSAMEG00000017172)	LOXL3 (ENSAMEG00000017133)	DOK1 (ENSAMEG00000017121)	M1AP (ENSAMEG00000017111)	SEMA4F (ENSAMEG00000017103)	HK2 (ENSAMEG00000017077) #22	ENSAMEG00000031341 #23	TACR1 (ENSAMEG00000017070) #24	EVA1A (ENSAMEG00000024618) #25	MRPL19 (ENSAMEG00000017428) #26	GCFC2 (ENSAMEG00000017424) #27	LRRTM4 (ENSAMEG00000019156) #28	ENSAMEG00000030394 #31	CTNNA2 (ENSAMEG00000010800)	LRRTM1 (ENSAMEG00000019333)	ENSAMEG00000018718	SUCLG1 (ENSAMEG00000001962)	DNAH6 (ENSAMEG00000002004)	TRABD2A (ENSAMEG00000002027)	TCF7L1 (ENSAMEG00000002051)	ENSAMEG00000031071
Giant Panda	MODERN SPECIES	2219																ENSAMEG00000027147 #22
Atlantogenata	ANCESTRAL SPECIES	43	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447 #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT01030000234543.A.a.`d.b	ENSGT00940000161705	ENSGT01030000234543.A.a.`d.a
Afrotheria	ANCESTRAL SPECIES	46	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.c #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT01030000234543.A.a.`d.b	ENSGT00940000161705	ENSGT01030000234543.A.a.`d.a
Afrotheria_a	ANCESTRAL SPECIES	45	ENSGT00390000001754	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000154096.b.b.b.a #25	ENSGT00390000009415 #26	ENSGT00390000000455.b #27	ENSGT00940000154909 #28	ENSGT00940000154447.c #31	ENSGT00940000162393	ENSGT00940000162300	ENSGT01030000234543.A.a.`d.b	ENSGT00940000161705	ENSGT01030000234543.A.a.`d.a
Elephant	MODERN SPECIES	278	RTKN (ENSLAFG00000007986)	INO80B (ENSLAFG00000011514)	WBP1 (ENSLAFG00000030643)	MOGS (ENSLAFG00000006045)	MRPL53 (ENSLAFG00000007990)	CCDC142 (ENSLAFG00000029911)	LBX2 (ENSLAFG00000021732)	PCGF1 (ENSLAFG00000018359)	TLX2 (ENSLAFG00000018364)	DQX1 (ENSLAFG00000018370)	AUP1 (ENSLAFG00000018372)	HTRA2 (ENSLAFG00000018377)	LOXL3 (ENSLAFG00000018382)	DOK1 (ENSLAFG00000027059)	M1AP (ENSLAFG00000018384)	HK2 (ENSLAFG00000012243) #22	TACR1 (ENSLAFG00000015590) #24	EVA1A (ENSLAFG00000012257) #25	ENSLAFG00000025565	MRPL19 (ENSLAFG00000000146) #26	GCFC2 (ENSLAFG00000002210) #27	LRRTM4 (ENSLAFG00000004386) #28	ENSLAFG00000028709 #31	ENSLAFG00000002146	ENSLAFG00000030430	ENSLAFG00000017076	ENSLAFG00000026049	LRRTM1 (ENSLAFG00000018565)	ENSLAFG00000006766
Hyrax	MODERN SPECIES	4334																HK2 (ENSPCAG00000013882) #22
Tenrec	MODERN SPECIES	5076																HK2 (ENSETEG00000014805) #22
Xenarthra	ANCESTRAL SPECIES	148	ENSGT00950000183109.d	ENSGT00390000017452	ENSGT00390000001440	ENSGT00390000009871	ENSGT00940000161036.A	ENSGT00940000162295	ENSGT00940000159651	ENSGT00940000162452	ENSGT00940000159579	ENSGT00390000016110	ENSGT00940000155108	ENSGT00940000158157	ENSGT00940000155980.C	ENSGT00390000005656	ENSGT00940000159592	ENSGT00950000182787.C #22	ENSGT00940000160888 #23
Sloth	MODERN SPECIES	4711																ENSCHOG00000007147 #22
Armadillo	MODERN SPECIES	2139	WBP1 (ENSDNOG00000008078)	MOGS (ENSDNOG00000044608)	MRPL53 (ENSDNOG00000046731)	CCDC142 (ENSDNOG00000015090)	TTC31 (ENSDNOG00000015109)	ENSDNOG00000023704	PCGF1 (ENSDNOG00000010394)	TLX2 (ENSDNOG00000019906)	DQX1 (ENSDNOG00000019907)	AUP1 (ENSDNOG00000019909)	HTRA2 (ENSDNOG00000019910)	LOXL3 (ENSDNOG00000001934)	DOK1 (ENSDNOG00000001938)	M1AP (ENSDNOG00000001939)	SEMA4F (ENSDNOG00000013083)	HK2 (ENSDNOG00000012318) #22	POLE4 (ENSDNOG00000015461) #23
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00390000017668	ENSGT00510000049083.b	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00390000017260	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00390000008041.C	ENSGT00940000155734.a.a	ENSGT00940000155734.a.b	ENSGT00940000155734.b	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00950000182815.a.a.b	ENSGT00940000161817	ENSGT00390000014618.b	ENSGT00390000014666.a	ENSGT00390000004928
Opossum	MODERN SPECIES		TMEM230 (ENSMODG00000011655)	SLC23A2 (ENSMODG00000011633)	RASSF2 (ENSMODG00000011588)	ENSMODG00000023187	PRNP (ENSMODG00000011569)	TGFA (ENSMODG00000011562)	ENSMODG00000011533	ENSMODG00000011528	PCYOX1 (ENSMODG00000011522)	TIA1 (ENSMODG00000011515)	C2orf42 (ENSMODG00000011505)	MXD1 (ENSMODG00000011481)	SNRNP27 (ENSMODG00000011407)	ADD2 (ENSMODG00000011394)	ENSMODG00000011333	HK2 (ENSMODG00000011328) #22	POLE4 (ENSMODG00000011284) #23	TACR1 (ENSMODG00000011268) #24	GREB1 (ENSMODG00000011187)	ENSMODG00000011128	ENSMODG00000040529	ENSMODG00000038278	MAK16 (ENSMODG00000011096)	TTI2 (ENSMODG00000011073)	ENSMODG00000042605	RNF122 (ENSMODG00000011059)	DUSP26 (ENSMODG00000011051)	ENSMODG00000023186	ENSMODG00000023184	ENSMODG00000046726	ENSMODG00000028692
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00390000017668	ENSGT00510000049083.b	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00390000017260	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00390000008041.C	ENSGT00940000155734.a.a	ENSGT00940000155734.a.b	ENSGT00940000155734.b	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00950000182815.a.a.b	ENSGT00940000161817	ENSGT00390000014618.b	ENSGT00390000014666.a	ENSGT00390000004928
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00390000017668	ENSGT00510000049083.b	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00390000017260	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00390000008041.C	ENSGT00940000155734.a.a	ENSGT00940000155734.a.b	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00950000182815.a.a.b	ENSGT00390000014618.b	ENSGT00390000014666.a	ENSGT00390000004928	ENSGT00940000158941	ENSGT00390000002288
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00390000017668	ENSGT00510000049083.b	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00390000017260	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00950000182787.C #22	ENSGT00940000160888 #23	ENSGT00940000153745.a #24	ENSGT00390000008041.C	ENSGT00940000155734.a.a	ENSGT00940000155734.a.b	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159152.d	ENSGT00940000158107	ENSGT00950000182815.a.a.b	ENSGT00390000014618.b	ENSGT00390000014666.a	ENSGT00390000004928	ENSGT00940000158941	ENSGT00390000002288
Common wonbat	MODERN SPECIES	1017	TMEM230 (ENSVURG00010011956)	SLC23A2 (ENSVURG00010011951)	RASSF2 (ENSVURG00010011937)	ENSVURG00010011929	PRNP (ENSVURG00010011920)	TGFA (ENSVURG00010011914)	ENSVURG00010011904	ENSVURG00010011897	PCYOX1 (ENSVURG00010011890)	TIA1 (ENSVURG00010011866)	C2orf42 (ENSVURG00010011848)	ASPRV1 (ENSVURG00010011841)	MXD1 (ENSVURG00010011831)	SNRNP27 (ENSVURG00010011813)	ADD2 (ENSVURG00010011797)	HK2 (ENSVURG00010011774) #22	POLE4 (ENSVURG00010011762) #23	TACR1 (ENSVURG00010011752) #24	GREB1 (ENSVURG00010011701)	E2F6 (ENSVURG00010011677)	MAK16 (ENSVURG00010011670)	TTI2 (ENSVURG00010011659)	RNF122 (ENSVURG00010011653)	DUSP26 (ENSVURG00010011646)	ENSVURG00010011635	UNC5D (ENSVURG00010011273)	ENSVURG00010011231	ENSVURG00010011221	ENSVURG00010011215	ZNF703 (ENSVURG00010011201)	ERLIN2 (ENSVURG00010011180)
koala	MODERN SPECIES	20	ENSPCIG00000031003	RASSF2 (ENSPCIG00000019887)	ENSPCIG00000019885	PRNP (ENSPCIG00000030958)	TGFA (ENSPCIG00000013095)	ENSPCIG00000013093	ENSPCIG00000034187	ENSPCIG00000022813	PCYOX1 (ENSPCIG00000013085)	TIA1 (ENSPCIG00000013084)	C2orf42 (ENSPCIG00000013083)	ASPRV1 (ENSPCIG00000027988)	MXD1 (ENSPCIG00000032401)	SNRNP27 (ENSPCIG00000027990)	ADD2 (ENSPCIG00000027991)	HK2 (ENSPCIG00000027993) #22	POLE4 (ENSPCIG00000031861) #23	TACR1 (ENSPCIG00000027998) #24	GREB1 (ENSPCIG00000027999)	ENSPCIG00000028000	ENSPCIG00000028003	MAK16 (ENSPCIG00000028005)	TTI2 (ENSPCIG00000028006)	RNF122 (ENSPCIG00000034986)	DUSP26 (ENSPCIG00000028181)	ENSPCIG00000015650	UNC5D (ENSPCIG00000011973)	ENSPCIG00000033834	ENSPCIG00000007142	ZNF703 (ENSPCIG00000035170)	ERLIN2 (ENSPCIG00000008913)
Wallaby	MODERN SPECIES	6418																ENSMEUG00000013149 #22
Tasmanian devil	MODERN SPECIES	1	PCNA (ENSSHAG00000029450)	SLC23A2 (ENSSHAG00000023643)	RASSF2 (ENSSHAG00000006466)	ENSSHAG00000024435	ENSSHAG00000029721	ENSSHAG00000027641	ENSSHAG00000012319	SNRPG (ENSSHAG00000031755)	PCYOX1 (ENSSHAG00000020850)	TIA1 (ENSSHAG00000012544)	C2orf42 (ENSSHAG00000021724)	ASPRV1 (ENSSHAG00000004646)	ENSSHAG00000028045	ENSSHAG00000020701	ENSSHAG00000008583	ENSSHAG00000010027 #22	ENSSHAG00000030671 #23	ENSSHAG00000025383 #24	ENSSHAG00000004743	ENSSHAG00000024456	ENSSHAG00000007275	ENSSHAG00000030276	MAK16 (ENSSHAG00000007593)	TTI2 (ENSSHAG00000007730)	RNF122 (ENSSHAG00000008057)	DUSP26 (ENSSHAG00000023682)	ENSSHAG00000023368	UNC5D (ENSSHAG00000012207)	KCNU1 (ENSSHAG00000011303)	ZNF703 (ENSSHAG00000027883)	ERLIN2 (ENSSHAG00000016369)
Sauria	ANCESTRAL SPECIES	27	ENSGT00390000008255	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915
Lepidosauria	ANCESTRAL SPECIES	52	ENSGT00390000011296	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915
tuatara	MODERN SPECIES	1478					TGFA (ENSSPUG00000008507)	FAM136A (ENSSPUG00000008511)	SNRPG (ENSSPUG00000008514)	ENSSPUG00000008523	TIA1 (ENSSPUG00000008547)	C2orf42 (ENSSPUG00000008574)	ENSSPUG00000008701	MXD1 (ENSSPUG00000008742)	SNRNP27 (ENSSPUG00000008751)	ADD2 (ENSSPUG00000008761)	FIGLA (ENSSPUG00000008795)	HK2 (ENSSPUG00000008819) #22	TACR1 (ENSSPUG00000008842) #24
Episquamata	ANCESTRAL SPECIES	24	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000153195.A.ab	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00390000007636	ENSGT00390000010391	ENSGT00940000156918	ENSGT00940000173670	ENSGT00940000161614
Laterata	ANCESTRAL SPECIES	44	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000153195.A.ab	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.l.b	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00390000007636	ENSGT00390000010391	ENSGT00940000156918	ENSGT00940000161614
Common wall lizard	MODERN SPECIES	16	ASTL (ENSPMRG00000009435)	DUSP2 (ENSPMRG00000009445)	STARD7 (ENSPMRG00000009451)	TMEM127 (ENSPMRG00000009454)	CIAO1 (ENSPMRG00000009463)	SNRNP200 (ENSPMRG00000009471)	ENSPMRG00000010611	USP39 (ENSPMRG00000010622)	ENSPMRG00000010637	C2orf68 (ENSPMRG00000010642)	ENSPMRG00000010646	ADD2 (ENSPMRG00000010651)	ENSPMRG00000010659	ENSPMRG00000010663	ENSPMRG00000010674	HK2 (ENSPMRG00000010685) #22	TACR1 (ENSPMRG00000010693) #24	ENSPMRG00000010698	SLC4A5 (ENSPMRG00000010756)	MTHFD2 (ENSPMRG00000011052)	BOLA3 (ENSPMRG00000011057)	TET3 (ENSPMRG00000011065)	ENSPMRG00000011074	DGUOK (ENSPMRG00000011082)	ACTG2 (ENSPMRG00000011086)	STAMBP (ENSPMRG00000011096)	KANSL3 (ENSPMRG00000011138)	UFM1 (ENSPMRG00000011234)	POLB (ENSPMRG00000011256)	DKK4 (ENSPMRG00000011358)	GGCX (ENSPMRG00000011400)
Argentine black and white tegu	MODERN SPECIES	94	ENSSMRG00000015815	SLC4A5 (ENSSMRG00000015545)	ENSSMRG00000015543	TACR1 (ENSSMRG00000015542) #24	TGFA (ENSSMRG00000015540)	FAM136A (ENSSMRG00000015537)	ENSSMRG00000015536	PCYOX1 (ENSSMRG00000015534)	TIA1 (ENSSMRG00000015531)	C2orf42 (ENSSMRG00000015529)	ENSSMRG00000015528	MXD1 (ENSSMRG00000015526)	SNRNP27 (ENSSMRG00000015525)	ADD2 (ENSSMRG00000015518)	FIGLA (ENSSMRG00000015515)	HK2 (ENSSMRG00000015512) #22	LGI3 (ENSSMRG00000015510)	ENSSMRG00000015504	RASSF2 (ENSSMRG00000015500)	SLC23A2 (ENSSMRG00000015499)	TMEM230 (ENSSMRG00000015498)	PCNA (ENSSMRG00000015497)	CDS2 (ENSSMRG00000015496)	ARHGAP25 (ENSSMRG00000015495)	BMP10 (ENSSMRG00000015494)	GKN2 (ENSSMRG00000015493)	GKN1 (ENSSMRG00000015492)	ENSSMRG00000015491	ANTXR1 (ENSSMRG00000015490)	GFPT1 (ENSSMRG00000015489)	NFU1 (ENSSMRG00000015488)
Toxicofera	ANCESTRAL SPECIES	49						ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00390000007636	ENSGT00390000010391	ENSGT00940000156918	ENSGT00940000173670	ENSGT00940000161614
Lizard	MODERN SPECIES	1268												ENSACAG00000006004	ENSACAG00000005984	ENSACAG00000005866	ENSACAG00000045442	ENSACAG00000005606 #22	ENSACAG00000005530 #24	ENSACAG00000016054
Elapidae	ANCESTRAL SPECIES	35	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627
Elapidae_a	ANCESTRAL SPECIES	58	ENSGT00390000007992	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627
Acanthophiinae	ANCESTRAL SPECIES	40	ENSGT00390000001901	ENSGT01030000234578.A.b.a.a.b	ENSGT00940000176261	ENSGT00940000165973	ENSGT00730000111371	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985.m	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000164825	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627
Mainland tiger snake	MODERN SPECIES	232	C2orf68 (ENSNSUG00000020323)	TMEM150A (ENSNSUG00000020324)	ENSNSUG00000020325	VAMP5 (ENSNSUG00000020326)	TGFA (ENSNSUG00000020327)	FAM136A (ENSNSUG00000020328)	SNRPG (ENSNSUG00000020329)	PCYOX1 (ENSNSUG00000020330)	TIA1 (ENSNSUG00000020331)	C2orf42 (ENSNSUG00000020332)	MXD1 (ENSNSUG00000020333)	SNRNP27 (ENSNSUG00000020334)	ADD2 (ENSNSUG00000020336)	FIGLA (ENSNSUG00000020340)	ENSNSUG00000020341	HK2 (ENSNSUG00000020342) #22	TACR1 (ENSNSUG00000020343) #24	ENSNSUG00000020344	SLC4A5 (ENSNSUG00000020345)	ENSNSUG00000020346	BOLA3 (ENSNSUG00000020347)	ENSNSUG00000020348	DGUOK (ENSNSUG00000020349)
Eastern brown snake	MODERN SPECIES	76	C2orf68 (ENSPTXG00000016597)	TMEM150A (ENSPTXG00000016598)	ENSPTXG00000016600	VAMP5 (ENSPTXG00000016601)	TGFA (ENSPTXG00000016603)	FAM136A (ENSPTXG00000016604)	SNRPG (ENSPTXG00000016606)	PCYOX1 (ENSPTXG00000016608)	TIA1 (ENSPTXG00000016609)	C2orf42 (ENSPTXG00000016611)	MXD1 (ENSPTXG00000016612)	SNRNP27 (ENSPTXG00000016613)	ADD2 (ENSPTXG00000016614)	FIGLA (ENSPTXG00000016615)	ENSPTXG00000016616	HK2 (ENSPTXG00000016617) #22	TACR1 (ENSPTXG00000016620) #24	ENSPTXG00000016621	SLC4A5 (ENSPTXG00000016623)	ENSPTXG00000016626	BOLA3 (ENSPTXG00000016627)	TET3 (ENSPTXG00000016629)	DGUOK (ENSPTXG00000016631)
Indian cobra	MODERN SPECIES	7	C2orf68 (ENSNNAG00000005564)	USP39 (ENSNNAG00000005511)	TMEM150A (ENSNNAG00000005479)	ENSNNAG00000005460	VAMP5 (ENSNNAG00000005451)	TGFA (ENSNNAG00000005430)	FAM136A (ENSNNAG00000005412)	SNRPG (ENSNNAG00000005396)	PCYOX1 (ENSNNAG00000005378)	TIA1 (ENSNNAG00000005335)	C2orf42 (ENSNNAG00000005288)	MXD1 (ENSNNAG00000005261)	SNRNP27 (ENSNNAG00000005239)	ADD2 (ENSNNAG00000005198)	FIGLA (ENSNNAG00000005187)	HK2 (ENSNNAG00000005114) #22	TACR1 (ENSNNAG00000005089) #24	ENSNNAG00000005071	SLC4A5 (ENSNNAG00000003881)	ENSNNAG00000003739	BOLA3 (ENSNNAG00000003721)	TET3 (ENSNNAG00000003698)	DGUOK (ENSNNAG00000003678)	ENSNNAG00000003660	ENSNNAG00000003648
Archelosauria	ANCESTRAL SPECIES	29	ENSGT00390000008255	ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915	ENSGT00390000009488
Archosauria	ANCESTRAL SPECIES	38					ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT00940000164825	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00390000004149	ENSGT00940000161253	ENSGT00390000007636	ENSGT00940000155596
Aves	ANCESTRAL SPECIES	30							ENSGT00940000160058	ENSGT00390000006707	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c
Neognathae	ANCESTRAL SPECIES	33						ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00910000146792	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965	ENSGT00390000008694.b.b
Neognathae_b	ANCESTRAL SPECIES	28	ENSGT00950000182864.a.b.a	ENSGT00390000013415.a.b	ENSGT01030000234527.A.a.b.a.a	ENSGT00940000159105	ENSGT00940000154909 #28	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00910000146792	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965	ENSGT00390000008694.b.b
Passeriformes	ANCESTRAL SPECIES	26	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00940000160325.b	ENSGT01060000250637	ENSGT00390000001901	ENSGT00390000007992	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00910000146792	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965	ENSGT00390000008694.b.b
Great tit	MODERN SPECIES	14	RETSAT (ENSPMJG00000015580)	ELMOD3 (ENSPMJG00000015581)	GPAT2 (ENSPMJG00000015583)	ENSPMJG00000015584	KCNIP3 (ENSPMJG00000015585)	COX5B (ENSPMJG00000015586)	H2AZ2 (ENSPMJG00000015588)	MAT2A (ENSPMJG00000015589)	GGCX (ENSPMJG00000015590)	VAMP8 (ENSPMJG00000015591)	USP39 (ENSPMJG00000015593)	MXD1 (ENSPMJG00000015594)	ENSPMJG00000015595	ADD2 (ENSPMJG00000015596)	ENSPMJG00000015597	HK2 (ENSPMJG00000015598) #22	ENSPMJG00000015599	ANXA4 (ENSPMJG00000015600)	AAK1 (ENSPMJG00000015601)	ENSPMJG00000015602	NFU1 (ENSPMJG00000015603)	GFPT1 (ENSPMJG00000015604)	ANTXR1 (ENSPMJG00000015634)	GKN1 (ENSPMJG00000015636)	ENSPMJG00000015637	GKN2 (ENSPMJG00000015638)	BMP10 (ENSPMJG00000015639)	ARHGAP25 (ENSPMJG00000015640)	CDS2 (ENSPMJG00000015641)	PCNA (ENSPMJG00000015778)	TMEM230 (ENSPMJG00000015779)
Passeriformes_d	ANCESTRAL SPECIES	30	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00940000160325.b	ENSGT01060000250637	ENSGT00390000001901	ENSGT00390000007992	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00910000146792	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965.i	ENSGT00390000008694.b.b
Flycatcher	MODERN SPECIES	14	ENSFALG00000000073	RETSAT (ENSFALG00000000076)	ENSFALG00000000079	ENSFALG00000000084	ENSFALG00000000088	ENSFALG00000025377	ENSFALG00000000092	ENSFALG00000025335	MAT2A (ENSFALG00000000100)	ENSFALG00000000106	ENSFALG00000025505	USP39 (ENSFALG00000000111)	ENSFALG00000027678	ENSFALG00000000120	ENSFALG00000000127	ENSFALG00000000141 #22	ENSFALG00000000154	ANXA4 (ENSFALG00000000158)	AAK1 (ENSFALG00000023038)	ENSFALG00000028073	ENSFALG00000023676	NFU1 (ENSFALG00000000179)	GFPT1 (ENSFALG00000000190)	ENSFALG00000026367	ANTXR1 (ENSFALG00000000216)	ENSFALG00000028248	GKN2 (ENSFALG00000000225)	BMP10 (ENSFALG00000027358)	ARHGAP25 (ENSFALG00000000232)	ENSFALG00000027407	ENSFALG00000024471
Passeriformes_g	ANCESTRAL SPECIES	38	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00940000160325.b	ENSGT01060000250637	ENSGT00390000001901	ENSGT00390000007992	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965.i	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c
Medium ground finch	MODERN SPECIES	340														SNRNP27 (ENSGFOG00000005857)	ENSGFOG00000005846	HK2 (ENSGFOG00000005831) #22	ENSGFOG00000005809	ANXA4 (ENSGFOG00000005787)	AAK1 (ENSGFOG00000005730)	NFU1 (ENSGFOG00000005716)	ENSGFOG00000005714	GFPT1 (ENSGFOG00000005604)	ANTXR1 (ENSGFOG00000005562)
Passeroidea	ANCESTRAL SPECIES	31	ENSGT00940000160571	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00940000160325.b	ENSGT01060000250637	ENSGT00390000001901	ENSGT00390000007992	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.b.a	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965.i	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c
Zebra finch	MODERN SPECIES	15	FAHD2A (ENSTGUG00000013905)	KCNIP3 (ENSTGUG00000028877)	COX5B (ENSTGUG00000029234)	PURB (ENSTGUG00000023488)	H2AFV (ENSTGUG00000015225)	GGCX (ENSTGUG00000025041)	VAMP8 (ENSTGUG00000020301)	ENSTGUG00000028257	ENSTGUG00000028918	USP39 (ENSTGUG00000027559)	ENSTGUG00000028338	MXD1 (ENSTGUG00000027663)	SNRNP27 (ENSTGUG00000003664)	ADD2 (ENSTGUG00000003669)	ENSTGUG00000026952	HK2 (ENSTGUG00000019594) #22	ENSTGUG00000003691	ANXA4 (ENSTGUG00000003734)	AAK1 (ENSTGUG00000003831)	ENSTGUG00000003859	NFU1 (ENSTGUG00000003860)	GFPT1 (ENSTGUG00000003894)	ANTXR1 (ENSTGUG00000003929)	ENSTGUG00000023627	ENSTGUG00000003990	ENSTGUG00000003996	ENSTGUG00000026000	ENSTGUG00000004008	ENSTGUG00000026424	TMEM230 (ENSTGUG00000028751)	ENSTGUG00000004082
Common canary	MODERN SPECIES	50	ENSSCAG00000015772	POLD2 (ENSSCAG00000015775)	AEBP1 (ENSSCAG00000015779)	ENSSCAG00000015785	ENSSCAG00000015788	RETSAT (ENSSCAG00000015795)	ENSSCAG00000015801	ENSSCAG00000015806	H2AZ2 (ENSSCAG00000015814)	MAT2A (ENSSCAG00000015818)	ENSSCAG00000015821	USP39 (ENSSCAG00000015826)	MXD1 (ENSSCAG00000015832)	SNRNP27 (ENSSCAG00000015840)	ADD2 (ENSSCAG00000015842)	HK2 (ENSSCAG00000015956) #22	ENSSCAG00000016101	ENSSCAG00000016110	ANXA4 (ENSSCAG00000016127)	ENSSCAG00000016134	ENSSCAG00000016138	NFU1 (ENSSCAG00000016140)	GFPT1 (ENSSCAG00000016186)	ANTXR1 (ENSSCAG00000016295)	GKN2 (ENSSCAG00000016309)	BMP10 (ENSSCAG00000016311)	ARHGAP25 (ENSSCAG00000016314)	CDS2 (ENSSCAG00000016342)	PCNA (ENSSCAG00000016398)	TMEM230 (ENSSCAG00000016407)	SLC23A2 (ENSSCAG00000016411)
Neognathae_c	ANCESTRAL SPECIES	30	ENSGT00950000182864.a.b.a	ENSGT00390000013415.a.b	ENSGT01030000234527.A.a.b.a.a	ENSGT00940000159105	ENSGT00940000154909 #28	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000156575	ENSGT00940000155968	ENSGT00390000008255	ENSGT00390000011296	ENSGT00940000158488	ENSGT00940000156522	ENSGT00930000150969.A.c.a	ENSGT00940000156279	ENSGT00950000183015.A	ENSGT00940000158877	ENSGT00390000004965	ENSGT00390000008694.b.b	ENSGT00950000182953.C.c	ENSGT00940000158546
Kakapo	MODERN SPECIES	14	SLC4A5 (ENSSHBG00005006028)	MTHFD2 (ENSSHBG00005006049)	MOB1A (ENSSHBG00005006074)	BOLA3 (ENSSHBG00005006096)	LRRTM4 (ENSSHBG00005006108) #28	TGFA (ENSSHBG00005006135)	FAM136A (ENSSHBG00005006158)	SNRPG (ENSSHBG00005006179)	PCYOX1 (ENSSHBG00005006195)	TIA1 (ENSSHBG00005006238)	C2orf42 (ENSSHBG00005006304)	MXD1 (ENSSHBG00005006328)	SNRNP27 (ENSSHBG00005006349)	ADD2 (ENSSHBG00005006368)	FIGLA (ENSSHBG00005006404)	HK2 (ENSSHBG00005006448) #22	ENSSHBG00005006494	ANXA4 (ENSSHBG00005006513)	AAK1 (ENSSHBG00005006573)	NFU1 (ENSSHBG00005006650)	GFPT1 (ENSSHBG00005006732)	ANTXR1 (ENSSHBG00005006763)	GKN2 (ENSSHBG00005006785)	BMP10 (ENSSHBG00005006801)	ARHGAP25 (ENSSHBG00005006831)	CDS2 (ENSSHBG00005006879)	PCNA (ENSSHBG00005006920)	TMEM230 (ENSSHBG00005006938)	SLC23A2 (ENSSHBG00005006990)	RASSF2 (ENSSHBG00005007061)	PRNP (ENSSHBG00005007087)
Golden eagle	MODERN SPECIES	4	KCNIP3 (ENSACCG00020006498)	COX5B (ENSACCG00020006472)	PURB (ENSACCG00020006459)	ENSACCG00020006445	MAT2A (ENSACCG00020006428)	GGCX (ENSACCG00020006379)	VAMP8 (ENSACCG00020006345)	ENSACCG00020006339	USP39 (ENSACCG00020006319)	ENSACCG00020006302	ENSACCG00020006291	MXD1 (ENSACCG00020006281)	SNRNP27 (ENSACCG00020006263)	ADD2 (ENSACCG00020006241)	ENSACCG00020006224	HK2 (ENSACCG00020006207) #22	ENSACCG00020006166	ANXA4 (ENSACCG00020006129)	AAK1 (ENSACCG00020006102)	ENSACCG00020006059	NFU1 (ENSACCG00020006044)	GFPT1 (ENSACCG00020005993)	ANTXR1 (ENSACCG00020005817)	GKN2 (ENSACCG00020005748)	BMP10 (ENSACCG00020005729)	ARHGAP25 (ENSACCG00020005714)	CDS2 (ENSACCG00020005693)	PCNA (ENSACCG00020005669)	TMEM230 (ENSACCG00020005655)	SLC23A2 (ENSACCG00020005627)	RASSF2 (ENSACCG00020005606)
Galloanserae	ANCESTRAL SPECIES	38						ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000011179	ENSGT00940000159904	ENSGT00550000074946	ENSGT00940000159012.ab	ENSGT00950000182943.kb.b.a.b.b	ENSGT00940000161976
Anatidae	ANCESTRAL SPECIES	100													ENSGT00940000163817	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000158782.g	ENSGT00390000011010.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000011179	ENSGT00940000159904	ENSGT00550000074946
Pink-footed goose	MODERN SPECIES	508													ENSABRG00000001757	ADD2 (ENSABRG00000001697)	ENSABRG00000001675	HK2 (ENSABRG00000001634) #22	ENSABRG00000001269	KCNIP3 (ENSABRG00000001207)	COX5B (ENSABRG00000001183)	H2AZ2 (ENSABRG00000000777)	MAT2A (ENSABRG00000000749)	ENSABRG00000000701	ENSABRG00000000666
Duck	MODERN SPECIES	3695														PURB (ENSAPLG00000018468)	ENSAPLG00000020328	HK2 (ENSAPLG00000011882) #22	MAT2A (ENSAPLG00000026391)	GGCX (ENSAPLG00000017930)	USP39 (ENSAPLG00000010392)	ENSAPLG00000025500	NPC1L1 (ENSAPLG00000010428)	ENSAPLG00000020286	DDX56 (ENSAPLG00000025410)	SNRNP200 (ENSAPLG00000004313)
Phasianidae	ANCESTRAL SPECIES	33	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000156575	ENSGT00940000159105	ENSGT00940000154909 #28	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299.g	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000014909	ENSGT00390000007992	ENSGT00940000161711	ENSGT00390000011179	ENSGT00940000159904	ENSGT00550000074946	ENSGT00940000159012.ab	ENSGT00950000182943.kb.b.a.b.b	ENSGT00940000161976
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000162631	ENSGT00390000014879.c.a	ENSGT00940000156575	ENSGT00940000159105	ENSGT00940000154909 #28	ENSGT00940000160058	ENSGT00390000006707	ENSGT00510000046985	ENSGT00390000011206.a	ENSGT00940000154962.A	ENSGT00390000011031	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299.g	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000156185	ENSGT00940000158782	ENSGT00390000011010.b	ENSGT00950000183162.a.b	ENSGT00900000140979.a.b	ENSGT00950000183185.c.a.a	ENSGT00390000004149	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627
Chicken	MODERN SPECIES	14	NT5DC4 (ENSGALG00010018387)	SLC20A1 (ENSGALG00010018380)	ENSGALG00010018371	ADRA1A (ENSGALG00010018356)	LRRTM4 (ENSGALG00010020736) #28	TGFA (ENSGALG00010018590)	FAM136A (ENSGALG00010018568)	SNRPGP15 (ENSGALG00010018546)	PCYOX1 (ENSGALG00010018533)	TIA1 (ENSGALG00010018491)	C2orf42 (ENSGALG00010019622)	MXD1 (ENSGALG00010019577)	SNRNP27 (ENSGALG00010019305)	ADD2 (ENSGALG00010019291)	ENSGALG00010019274	HK2 (ENSGALG00010019264) #22	ENSGALG00010019215	ENSGALG00010019174	COX5B (ENSGALG00010019149)	PURB (ENSGALG00010020743)	ENSGALG00010019132	ENSGALG00010019772	NCAPH (ENSGALG00010019477)	TACR1 (ENSGALG00010020724) #24	ENSGALG00010020720	SLC4A5 (ENSGALG00010020707)	MTHFD2 (ENSGALG00010020700)	MOB1A (ENSGALG00010020696)	BOLA3 (ENSGALG00010020691)	TET3 (ENSGALG00010020648)	DGUOK (ENSGALG00010020617)
Turkey	MODERN SPECIES	16	IL1RN (ENSMGAG00000003598)	ENSMGAG00000009142	ENSMGAG00000006570	ENSMGAG00000015598 #28	TGFA (ENSMGAG00000007794)	FAM136A (ENSMGAG00000018462)	SNRPG (ENSMGAG00000018451)	PCYOX1 (ENSMGAG00000003539)	TIA1 (ENSMGAG00000003493)	C2orf42 (ENSMGAG00000003417)	MXD1 (ENSMGAG00000003405)	SNRNP27 (ENSMGAG00000003107)	ENSMGAG00000003091	ENSMGAG00000022334	ENSMGAG00000021856	ENSMGAG00000010810 #22	ENSMGAG00000010852	ENSMGAG00000010429	ENSMGAG00000010411	ENSMGAG00000010406	ENSMGAG00000001756	TACR1 (ENSMGAG00000022708) #24	ENSMGAG00000010375	ENSMGAG00000002846	ENSMGAG00000002894	IKBKB (ENSMGAG00000002921)	PLAT (ENSMGAG00000002991)	AP3M2 (ENSMGAG00000003051)	KAT6A (ENSMGAG00000003192)	ANK1 (ENSMGAG00000003283)	NKX6-3 (ENSMGAG00000003436)
Japanese quail	MODERN SPECIES	14	SLC20A1 (ENSCJPG00005011723)	ANXA4 (ENSCJPG00005011724)	ADRA1A (ENSCJPG00005011726)	LRRTM4 (ENSCJPG00005011728) #28	TGFA (ENSCJPG00005011729)	FAM136A (ENSCJPG00005011730)	SNRPG (ENSCJPG00005011731)	PCYOX1 (ENSCJPG00005011732)	TIA1 (ENSCJPG00005011733)	C2orf42 (ENSCJPG00005011735)	MXD1 (ENSCJPG00005011736)	ENSCJPG00005011738	SNRNP27 (ENSCJPG00005011739)	ADD2 (ENSCJPG00005011740)	ENSCJPG00005011746	HK2 (ENSCJPG00005011748) #22	ENSCJPG00005011749	KCNIP3 (ENSCJPG00005011751)	PURB (ENSCJPG00005011753)	COX5B (ENSCJPG00005011754)	H2AZ2 (ENSCJPG00005011760)	MAT2A (ENSCJPG00005011761)	GGCX (ENSCJPG00005011762)	ENSCJPG00005011819	USP39 (ENSCJPG00005011820)	ENSCJPG00005011835	MRPS24 (ENSCJPG00005011836)	NPC1L1 (ENSCJPG00005011837)	DDX56 (ENSCJPG00005011838)	TMED4 (ENSCJPG00005011839)	ENSCJPG00005011840
African ostrich	MODERN SPECIES	417																HK2 (ENSSCUG00000008196) #22	ENSSCUG00000008068	ANXA4 (ENSSCUG00000008060)	AAK1 (ENSSCUG00000008058)	ENSSCUG00000008054	NFU1 (ENSSCUG00000008052)	GFPT1 (ENSSCUG00000008006)	ANTXR1 (ENSSCUG00000007961)	GKN2 (ENSSCUG00000007953)	BMP10 (ENSSCUG00000007949)	ARHGAP25 (ENSSCUG00000007948)	CDS2 (ENSSCUG00000007945)	PCNA (ENSSCUG00000007939)	TMEM230 (ENSSCUG00000007937)	SLC23A2 (ENSSCUG00000007934)
Australian saltwater crocodile	MODERN SPECIES	51	CDS2 (ENSCPRG00005016351)	PCNA (ENSCPRG00005016357)	TMEM230 (ENSCPRG00005016358)	SLC23A2 (ENSCPRG00005016364)	RASSF2 (ENSCPRG00005016383)	PRNP (ENSCPRG00005016388)	LRRTM4 (ENSCPRG00005016394) #28	ENSCPRG00005016401	TIA1 (ENSCPRG00005016407)	C2orf42 (ENSCPRG00005016412)	ENSCPRG00005016416	MXD1 (ENSCPRG00005016437)	SNRNP27 (ENSCPRG00005016441)	ADD2 (ENSCPRG00005016445)	FIGLA (ENSCPRG00005016457)	HK2 (ENSCPRG00005016465) #22	TACR1 (ENSCPRG00005016480) #24	ENSCPRG00005016482	SLC4A5 (ENSCPRG00005016505)	ENSCPRG00005016587	MOB1A (ENSCPRG00005016590)	ENSCPRG00005016603	TET3 (ENSCPRG00005016623)	ENSCPRG00005016634	CNNM4 (ENSCPRG00005000048)	LMAN2L (ENSCPRG00005000049)	ENSCPRG00005000051	ENSCPRG00005000053	KANSL3 (ENSCPRG00005000078)	ARID5A (ENSCPRG00005000102)	ENSCPRG00005000111
Cryptodira	ANCESTRAL SPECIES	30	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00940000153272.b	ENSGT00390000011031	ENSGT00940000154962.A	ENSGT00390000011206.a	ENSGT00510000046985	ENSGT00390000006707	ENSGT00940000169447	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000156590	ENSGT00530000063586.a	ENSGT00940000158782	ENSGT00940000160571
Chinese turtle	MODERN SPECIES	1531						TGFA (ENSPSIG00000012967)	FAM136A (ENSPSIG00000013282)	PCYOX1 (ENSPSIG00000013285)	TIA1 (ENSPSIG00000013567)	C2orf42 (ENSPSIG00000014594)	ENSPSIG00000014711	MXD1 (ENSPSIG00000014955)	SNRNP27 (ENSPSIG00000016449)	ADD2 (ENSPSIG00000017060)	FIGLA (ENSPSIG00000017448)	HK2 (ENSPSIG00000017517) #22	TACR1 (ENSPSIG00000018088) #24	ENSPSIG00000004961	ENSPSIG00000001025	SLC4A5 (ENSPSIG00000005079)	MTHFD2 (ENSPSIG00000005679)	MOB1A (ENSPSIG00000006022)	TET3 (ENSPSIG00000006030)	DGUOK (ENSPSIG00000006096)	ACTG2 (ENSPSIG00000006530)	STAMBP (ENSPSIG00000006552)	DUSP11 (ENSPSIG00000008172)	PROM2 (ENSPSIG00000008177)	KCNIP3 (ENSPSIG00000008584)	FAHD2A (ENSPSIG00000008958)	GPAT2 (ENSPSIG00000009104)
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00940000153272.b.a.a	ENSGT00390000011031	ENSGT00940000154962.A	ENSGT00390000011206.a	ENSGT00510000046985	ENSGT00390000006707	ENSGT00940000169447	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000156590	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b
Emydidae	ANCESTRAL SPECIES		ENSGT00940000155968	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00940000153272.b.a.a	ENSGT00390000011031	ENSGT00940000154962.A	ENSGT00390000011206.a	ENSGT00510000046985	ENSGT00390000006707	ENSGT00940000165501	ENSGT00940000159446	ENSGT00730000111237	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000156590	ENSGT00960000191770	ENSGT00940000158782	ENSGT00940000160571
Three-toed box turtle	MODERN SPECIES	20	AAK1 (ENSTMTG00000005373)	ANXA4 (ENSTMTG00000005355)	ENSTMTG00000005332	ENSTMTG00000005217	TGFA (ENSTMTG00000005132)	C2orf42 (ENSTMTG00000005105)	TIA1 (ENSTMTG00000005076)	PCYOX1 (ENSTMTG00000005055)	SNRPG (ENSTMTG00000005041)	FAM136A (ENSTMTG00000005034)	ENSTMTG00000004953	MXD1 (ENSTMTG00000004928)	SNRNP27 (ENSTMTG00000004919)	ADD2 (ENSTMTG00000004835)	FIGLA (ENSTMTG00000004813)	HK2 (ENSTMTG00000004700) #22	TACR1 (ENSTMTG00000004670) #24	ENSTMTG00000004639	SLC4A5 (ENSTMTG00000004554)	MTHFD2 (ENSTMTG00000004520)	MOB1A (ENSTMTG00000004497)	BOLA3 (ENSTMTG00000004480)	ENSTMTG00000004465	DGUOK (ENSTMTG00000004432)	ACTG2 (ENSTMTG00000004401)	STAMBP (ENSTMTG00000004373)	DUSP11 (ENSTMTG00000004328)	ENSTMTG00000004320	KCNIP3 (ENSTMTG00000004274)	FAHD2A (ENSTMTG00000004243)	GPAT2 (ENSTMTG00000004201)
painted turtle	MODERN SPECIES	709	ANXA4 (ENSCPBG00000003449)	ENSCPBG00000003481	ENSCPBG00000003493	TGFA (ENSCPBG00000003503)	ENSCPBG00000003535	C2orf42 (ENSCPBG00000003591)	TIA1 (ENSCPBG00000003611)	PCYOX1 (ENSCPBG00000003626)	SNRPG (ENSCPBG00000003642)	FAM136A (ENSCPBG00000003652)	ENSCPBG00000003673	MXD1 (ENSCPBG00000003695)	SNRNP27 (ENSCPBG00000003716)	ADD2 (ENSCPBG00000003740)	FIGLA (ENSCPBG00000003776)	HK2 (ENSCPBG00000003789) #22
Testudinidae	ANCESTRAL SPECIES	31	ENSGT00940000156575	ENSGT00940000156185	ENSGT00940000160058	ENSGT00940000153272.b.a.a	ENSGT00390000011031	ENSGT00940000154962.A	ENSGT00390000011206.a	ENSGT00510000046985	ENSGT00390000006707	ENSGT00940000169447	ENSGT00940000165501	ENSGT00940000159446	ENSGT00940000163817	ENSGT00940000159299	ENSGT00440000033552	ENSGT00950000182787.C #22	ENSGT00940000153745.a #24	ENSGT00940000165233	ENSGT00940000157488	ENSGT00940000154863	ENSGT01050000244898.b.a	ENSGT00390000013048	ENSGT00940000157631	ENSGT00940000159627	ENSGT00940000154148.a.b	ENSGT00940000153710.a	ENSGT00940000155847	ENSGT00940000158782	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005006663	ENSGEVG00005006558	TGFA (ENSGEVG00005006484)	ENSGEVG00005006438	C2orf42 (ENSGEVG00005006417)	TIA1 (ENSGEVG00005006370)	PCYOX1 (ENSGEVG00005006343)	SNRPG (ENSGEVG00005006328)	FAM136A (ENSGEVG00005006313)	ENSGEVG00005006278	ENSGEVG00005006242	MXD1 (ENSGEVG00005006225)	ENSGEVG00005006202	ADD2 (ENSGEVG00005006098)	FIGLA (ENSGEVG00005006051)	HK2 (ENSGEVG00005005955) #22	TACR1 (ENSGEVG00005005891) #24	ENSGEVG00005005734	SLC4A5 (ENSGEVG00005005604)	MTHFD2 (ENSGEVG00005005579)	MOB1A (ENSGEVG00005005564)	BOLA3 (ENSGEVG00005005546)	TET3 (ENSGEVG00005005516)	DGUOK (ENSGEVG00005005475)	ACTG2 (ENSGEVG00005005443)	STAMBP (ENSGEVG00005005424)	ENSGEVG00005005401	KCNIP3 (ENSGEVG00005005346)	FAHD2A (ENSGEVG00005005308)	GPAT2 (ENSGEVG00005005258)	ADRA2B (ENSGEVG00005005225)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2814											ENSCABG00000009735	ENSCABG00000009738	MXD1 (ENSCABG00000009792)	ADD2 (ENSCABG00000009798)	FIGLA (ENSCABG00000009814)	HK2 (ENSCABG00000009823) #22
Abingdon island giant tortoise	MODERN SPECIES	600																ENSCABG00000003047 #22