Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Primates	ANCESTRAL SPECIES	9	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Rhinopithecus	ANCESTRAL SPECIES	227	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00640000091523 #14	ENSGT00390000010770.q.a #15	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995
Black snub-nosed monkey	MODERN SPECIES	90						TMEM252 (ENSRBIG00000012350) #12	PGM5 (ENSRBIG00000031935) #13	ENSRBIG00000042766 #14	ENSRBIG00000034943 #15	ENSRBIG00000041692 #16	DOCK8 (ENSRBIG00000031277) #17	KANK1 (ENSRBIG00000030454) #18	DMRT1 (ENSRBIG00000040985) #19	DMRT3 (ENSRBIG00000030818) #20	DMRT2 (ENSRBIG00000038326) #21	SMARCA2 (ENSRBIG00000038618) #22	ENSRBIG00000039498 #23	SLC24A3 (ENSRBIG00000026610) #24	RIN2 (ENSRBIG00000030048) #25	NAA20 (ENSRBIG00000037845) #26	CRNKL1 (ENSRBIG00000031770) #27	CFAP61 (ENSRBIG00000013830) #28	RALGAPA2 (ENSRBIG00000011325) #29	ENSRBIG00000044906 #30	KIZ (ENSRBIG00000004023) #31	XRN2 (ENSRBIG00000036193) #32
Golden snub-nosed monkey	MODERN SPECIES	1156				ITGB1 (ENSRROG00000044827)	NRP1 (ENSRROG00000036541)	PGM5 (ENSRROG00000035630) #13	ENSRROG00000004214 #14	ENSRROG00000041612 #15	ENSRROG00000031285 #16	DOCK8 (ENSRROG00000030555) #17	KANK1 (ENSRROG00000028581) #18	DMRT1 (ENSRROG00000035111) #19	DMRT3 (ENSRROG00000033393) #20	DMRT2 (ENSRROG00000028272) #21	ENSRROG00000034283	SMARCA2 (ENSRROG00000019271) #22
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Vervet Monkey	MODERN SPECIES	3	TJP2 (ENSCSAG00000008451)	FXN (ENSCSAG00000008470)	PRKACG (ENSCSAG00000018499)	PIP5K1B (ENSCSAG00000008511)	PABIR1 (ENSCSAG00000018497)	TMEM252 (ENSCSAG00000008529) #12	PGM5 (ENSCSAG00000008540) #13	FOXD4L1 (ENSCSAG00000018495)	ENSCSAG00000008555 #14	ENSCSAG00000018493 #15	DOCK8 (ENSCSAG00000008591) #17	KANK1 (ENSCSAG00000008611) #18	DMRT1 (ENSCSAG00000008623) #19	DMRT3 (ENSCSAG00000008627) #20	DMRT2 (ENSCSAG00000008632) #21	SMARCA2 (ENSCSAG00000008650) #22	ENSCSAG00000008657 #23	VLDLR (ENSCSAG00000008671)	KCNV2 (ENSCSAG00000008677)	PUM3 (ENSCSAG00000008691)	RFX3 (ENSCSAG00000008704)	ENSCSAG00000008711	SLC1A1 (ENSCSAG00000008723)	PLPP6 (ENSCSAG00000018491)	SPATA6L (ENSCSAG00000008768)	CDC37L1 (ENSCSAG00000008790)	AK3 (ENSCSAG00000008801)	RCL1 (ENSCSAG00000008811)	JAK2 (ENSCSAG00000008828)	INSL6 (ENSCSAG00000008855)	INSL4 (ENSCSAG00000008859)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Drill	MODERN SPECIES	978																SMARCA2 (ENSMLEG00000027418) #22	ENSMLEG00000041221	ENSMLEG00000035182	VLDLR (ENSMLEG00000032288)	KCNV2 (ENSMLEG00000032357)	PUM3 (ENSMLEG00000034820)	ENSMLEG00000041919	RFX3 (ENSMLEG00000033860)	ENSMLEG00000038681	ENSMLEG00000000662	GLIS3 (ENSMLEG00000040353)	SLC1A1 (ENSMLEG00000042172)	SPATA6L (ENSMLEG00000034746)	PLPP6 (ENSMLEG00000009133)	CDC37L1 (ENSMLEG00000014590)	AK3 (ENSMLEG00000032869)
Sooty mangabey	MODERN SPECIES	629	APBA1 (ENSCATG00000037394)	ENTREP1 (ENSCATG00000029249)	TJP2 (ENSCATG00000004548)	FXN (ENSCATG00000031607)	PIP5K1B (ENSCATG00000030684)	TMEM252 (ENSCATG00000030856) #12	PGM5 (ENSCATG00000040727) #13	FOXD4L1 (ENSCATG00000041044)	ENSCATG00000043151 #14	ENSCATG00000035578 #16	DOCK8 (ENSCATG00000037251) #17	KANK1 (ENSCATG00000042088) #18	DMRT1 (ENSCATG00000043860) #19	DMRT3 (ENSCATG00000043509) #20	DMRT2 (ENSCATG00000032878) #21	SMARCA2 (ENSCATG00000031470) #22	ENSCATG00000034215 #23	ENSCATG00000014393	VLDLR (ENSCATG00000033177)	KCNV2 (ENSCATG00000037552)	PUM3 (ENSCATG00000024880)	ENSCATG00000034924	ENSCATG00000029808	RFX3 (ENSCATG00000034639)	ENSCATG00000030409	GLIS3 (ENSCATG00000038488)	SLC1A1 (ENSCATG00000039114)	PLPP6 (ENSCATG00000022355)	SPATA6L (ENSCATG00000043815)	CDC37L1 (ENSCATG00000041223)	AK3 (ENSCATG00000044404)
Olive baboon	MODERN SPECIES	4	ENSPANG00000050497	TJP2 (ENSPANG00000025110)	FXN (ENSPANG00000025109)	PRKACG (ENSPANG00000041885)	PIP5K1B (ENSPANG00000025113)	ENSPANG00000042661	TMEM252 (ENSPANG00000025115) #12	PGM5 (ENSPANG00000025114) #13	FOXD4L1 (ENSPANG00000009332)	ENSPANG00000025116 #14	DOCK8 (ENSPANG00000025117) #17	KANK1 (ENSPANG00000025125) #18	DMRT1 (ENSPANG00000025124) #19	DMRT3 (ENSPANG00000025123) #20	DMRT2 (ENSPANG00000025122) #21	SMARCA2 (ENSPANG00000025121) #22	ENSPANG00000042712	VLDLR (ENSPANG00000025120)	KCNV2 (ENSPANG00000025119)	PUM3 (ENSPANG00000025118)	RFX3 (ENSPANG00000025143)	ENSPANG00000046940	GLIS3 (ENSPANG00000025157)	SLC1A1 (ENSPANG00000025156)	SPATA6L (ENSPANG00000025154)	CDC37L1 (ENSPANG00000025153)	AK3 (ENSPANG00000025152)	RCL1 (ENSPANG00000025151)	JAK2 (ENSPANG00000025145)	ENSPANG00000041678	INSL6 (ENSPANG00000025144)
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00940000154318.B.i.b #23	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Pig-tailed macaque	MODERN SPECIES	182	ENTREP1 (ENSMNEG00000040043)	TJP2 (ENSMNEG00000036109)	FXN (ENSMNEG00000034453)	PIP5K1B (ENSMNEG00000011196)	TMEM252 (ENSMNEG00000034076) #12	PGM5 (ENSMNEG00000042872) #13	FOXD4L1 (ENSMNEG00000037878)	ENSMNEG00000034389 #14	ENSMNEG00000005621 ##15	ENSMNEG00000040201 #16	DOCK8 (ENSMNEG00000042769) #17	KANK1 (ENSMNEG00000029060) #18	DMRT1 (ENSMNEG00000036006) #19	DMRT3 (ENSMNEG00000035240) #20	DMRT2 (ENSMNEG00000033851) #21	SMARCA2 (ENSMNEG00000041069) #22	ENSMNEG00000028744	ENSMNEG00000040152 #23	ENSMNEG00000044919	VLDLR (ENSMNEG00000040863)	KCNV2 (ENSMNEG00000012723)	PUM3 (ENSMNEG00000035288)	ENSMNEG00000032248	RFX3 (ENSMNEG00000038188)	ENSMNEG00000042708	ENSMNEG00000040313	GLIS3 (ENSMNEG00000032738)	SLC1A1 (ENSMNEG00000029913)	SPATA6L (ENSMNEG00000044422)	PLPP6 (ENSMNEG00000001828)	CDC37L1 (ENSMNEG00000030663)
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000005811.w.a	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.b.b.a.a.a.a.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00390000010770.r ##15	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT01100000264112.b.a	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.b
Rhesus	MODERN SPECIES	6	PRKACG (ENSMMUG00000020379)	PIP5K1B (ENSMMUG00000012472)	TMEM252 (ENSMMUG00000056154) #12	PGM5 (ENSMMUG00000008230) #13	FOXD4L1 (ENSMMUG00000023182)	ZNG1A (ENSMMUG00000016193) #14	ENSMMUG00000050562 ##15	ENSMMUG00000058086 #16	DOCK8 (ENSMMUG00000016976) #17	ENSMMUG00000064601	KANK1 (ENSMMUG00000019862) #18	ENSMMUG00000061012	DMRT3 (ENSMMUG00000044083) #20	DMRT2 (ENSMMUG00000014844) #21	ENSMMUG00000051059	SMARCA2 (ENSMMUG00000015279) #22	VLDLR (ENSMMUG00000015093)	KCNV2 (ENSMMUG00000060949)	PUM3 (ENSMMUG00000002362)	RFX3 (ENSMMUG00000000802)	GLIS3 (ENSMMUG00000057568)	SLC1A1 (ENSMMUG00000000135)	PLPP6 (ENSMMUG00000059411)	SPATA6L (ENSMMUG00000000136)	CDC37L1 (ENSMMUG00000000141)	AK3 (ENSMMUG00000000143)	RCL1 (ENSMMUG00000057331)	JAK2 (ENSMMUG00000014558)	INSL6 (ENSMMUG00000065127)	INSL4 (ENSMMUG00000058221)	RLN2 (ENSMMUG00000047971)
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000053935	ENSMFAG00000063759	PRKACG (ENSMFAG00000030376)	PIP5K1B (ENSMFAG00000038711)	TMEM252 (ENSMFAG00000062896) #12	PGM5 (ENSMFAG00000045131) #13	ENSMFAG00000044635 #14	ENSMFAG00000051139 ##15	ENSMFAG00000045857 #16	DOCK8 (ENSMFAG00000008069) #17	ENSMFAG00000047680	KANK1 (ENSMFAG00000036947) #18	ENSMFAG00000060255	DMRT3 (ENSMFAG00000045391) #20	DMRT2 (ENSMFAG00000040812) #21	ENSMFAG00000058821 #22	ENSMFAG00000056188	ENSMFAG00000003814 #22	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374)	KCNV2 (ENSMFAG00000055892)	PUM3 (ENSMFAG00000001430)	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237)	ENSMFAG00000049557	ENSMFAG00000030908	SLC1A1 (ENSMFAG00000038163)	SPATA6L (ENSMFAG00000032285)	CDC37L1 (ENSMFAG00000000879)	AK3 (ENSMFAG00000041698)	ENSMFAG00000049440
Crab-eating macaque	MODERN SPECIES	6	PRKACG (ENSMFAG00000030376)	PIP5K1B (ENSMFAG00000038711)	TMEM252 (ENSMFAG00000062896) #12	PGM5 (ENSMFAG00000045131) #13	ENSMFAG00000044635 #14	ENSMFAG00000051139 ##15	ENSMFAG00000045857 #16	DOCK8 (ENSMFAG00000008069) #17	ENSMFAG00000047680	KANK1 (ENSMFAG00000036947) #18	ENSMFAG00000060255	DMRT3 (ENSMFAG00000045391) #20	DMRT2 (ENSMFAG00000040812) #21	ENSMFAG00000058821 #22	ENSMFAG00000056188	ENSMFAG00000003814 #22	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374)	KCNV2 (ENSMFAG00000055892)	PUM3 (ENSMFAG00000001430)	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237)	ENSMFAG00000049557	ENSMFAG00000030908	SLC1A1 (ENSMFAG00000038163)	SPATA6L (ENSMFAG00000032285)	CDC37L1 (ENSMFAG00000000879)	AK3 (ENSMFAG00000041698)	ENSMFAG00000049440	RCL1 (ENSMFAG00000037906)	JAK2 (ENSMFAG00000003627)
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353.a	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353.a.a.a	ENSGT00940000163353.a.a.b	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Homo/Pan group	ANCESTRAL SPECIES	27										ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Pan	ANCESTRAL SPECIES	26										ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.cb	ENSGT01050000244879.a.a.b	ENSGT00910000146957	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Chimpanzee	MODERN SPECIES	22							ENSPTRG00000031407	ENSPTRG00000020994	ENSPTRG00000052275	DOCK8 (ENSPTRG00000020725) #17	ENSPTRG00000044534	KANK1 (ENSPTRG00000041819) #18	DMRT1 (ENSPTRG00000020728) #19	DMRT3 (ENSPTRG00000020729) #20	DMRT2 (ENSPTRG00000020730) #21	SMARCA2 (ENSPTRG00000051168) #22	ENSPTRG00000052144	ENSPTRG00000047815	VLDLR (ENSPTRG00000020732)	KCNV2 (ENSPTRG00000020734)	PUM3 (ENSPTRG00000020735)	ENSPTRG00000046907	RFX3 (ENSPTRG00000048670)	ENSPTRG00000050873	GLIS3 (ENSPTRG00000020738)	SLC1A1 (ENSPTRG00000020739)	SPATA6L (ENSPTRG00000020740)	PLPP6 (ENSPTRG00000044921)	CDC37L1 (ENSPTRG00000020741)	AK3 (ENSPTRG00000020742)	RCL1 (ENSPTRG00000020743)
Bonobo	MODERN SPECIES	22											ENSPPAG00000035014 #16	DOCK8 (ENSPPAG00000041152) #17	DMRT1 (ENSPPAG00000036830) #19	ENSPPAG00000027768 #20	DMRT2 (ENSPPAG00000033739) #21	SMARCA2 (ENSPPAG00000038717) #22	ENSPPAG00000042332	ENSPPAG00000042393	VLDLR (ENSPPAG00000029389)	KCNV2 (ENSPPAG00000040791)	PUM3 (ENSPPAG00000041337)	ENSPPAG00000029157	RFX3 (ENSPPAG00000039978)	ENSPPAG00000011368	GLIS3 (ENSPPAG00000043097)	SLC1A1 (ENSPPAG00000027502)	SPATA6L (ENSPPAG00000010175)	CDC37L1 (ENSPPAG00000038614)	AK3 (ENSPPAG00000033568)	RCL1 (ENSPPAG00000037958)	JAK2 (ENSPPAG00000019000)
Human	MODERN SPECIES	21								WASHC1 (ENSG00000181404)	FOXD4 (ENSG00000170122)	ZNG1A (ENSG00000172785)	DOCK8 (ENSG00000107099) #17	KANK1 (ENSG00000107104) #18	DMRT1 (ENSG00000137090) #19	DMRT3 (ENSG00000064218) #20	DMRT2 (ENSG00000173253) #21	SMARCA2 (ENSG00000080503) #22	VLDLR (ENSG00000147852)	KCNV2 (ENSG00000168263)	PUM3 (ENSG00000080608)	RFX3 (ENSG00000080298)	GLIS3 (ENSG00000107249)	SLC1A1 (ENSG00000106688)	SPATA6L (ENSG00000106686)	PLPP6 (ENSG00000205808)	CDC37L1 (ENSG00000106993)	AK3 (ENSG00000147853)	RCL1 (ENSG00000120158)	JAK2 (ENSG00000096968)	INSL6 (ENSG00000120210)	INSL4 (ENSG00000120211)	RLN2 (ENSG00000107014)
Gorilla	MODERN SPECIES	22	TJP2 (ENSGGOG00000010313)	FXN (ENSGGOG00000007636)	PIP5K1B (ENSGGOG00000013948)	PABIR1 (ENSGGOG00000034987)	TMEM252 (ENSGGOG00000015514) #12	ENSGGOG00000037092 #13	FOXD4 (ENSGGOG00000003673)	ENSGGOG00000022867 #14	ENSGGOG00000015757 #16	DOCK8 (ENSGGOG00000008791) #17	KANK1 (ENSGGOG00000005466) #18	DMRT1 (ENSGGOG00000013298) #19	DMRT3 (ENSGGOG00000013303) #20	DMRT2 (ENSGGOG00000025101) #21	ENSGGOG00000039224	SMARCA2 (ENSGGOG00000000513) #22	ENSGGOG00000038609	VLDLR (ENSGGOG00000001362)	KCNV2 (ENSGGOG00000000231)	PUM3 (ENSGGOG00000006143)	ENSGGOG00000022372	RFX3 (ENSGGOG00000003805)	GLIS3 (ENSGGOG00000038970)	SLC1A1 (ENSGGOG00000000262)	PLPP6 (ENSGGOG00000040149)	SPATA6L (ENSGGOG00000034964)	CDC37L1 (ENSGGOG00000006889)	AK3 (ENSGGOG00000028122)	RCL1 (ENSGGOG00000015041)	ENSGGOG00000022573	JAK2 (ENSGGOG00000007243)
Orangutan	MODERN SPECIES	22	ENTREP1 (ENSPPYG00000019277)	TJP2 (ENSPPYG00000019275)	PRKACG (ENSPPYG00000019273)	ENSPPYG00000019272	PABIR1 (ENSPPYG00000019271)	TMEM252 (ENSPPYG00000019269) #12	PGM5 (ENSPPYG00000019268) #13	ENSPPYG00000041038	ZNG1A (ENSPPYG00000019265) #14	ENSPPYG00000030930 #16	DOCK8 (ENSPPYG00000019264) #17	KANK1 (ENSPPYG00000019262) #18	DMRT1 (ENSPPYG00000019261) #19	DMRT3 (ENSPPYG00000019260) #20	DMRT2 (ENSPPYG00000035747) #21	SMARCA2 (ENSPPYG00000019258) #22	ENSPPYG00000041078	VLDLR (ENSPPYG00000019257)	KCNV2 (ENSPPYG00000019256)	PUM3 (ENSPPYG00000019255)	ENSPPYG00000019254	RFX3 (ENSPPYG00000019253)	GLIS3 (ENSPPYG00000019250)	SLC1A1 (ENSPPYG00000019249)	PLPP6 (ENSPPYG00000019248)	SPATA6L (ENSPPYG00000019247)	CDC37L1 (ENSPPYG00000019246)	AK3 (ENSPPYG00000019245)	RCL1 (ENSPPYG00000019244)	JAK2 (ENSPPYG00000019243)	INSL6 (ENSPPYG00000019242)
Gibbon	MODERN SPECIES	10	PIP5K1B (ENSNLEG00000008227)	PABIR1 (ENSNLEG00000034102)	ENSNLEG00000030468	TMEM252 (ENSNLEG00000028670) #12	ENSNLEG00000008260 #13	ENSNLEG00000018739	ENSNLEG00000008264	ENSNLEG00000008270 #14	ENSNLEG00000028331 #16	DOCK8 (ENSNLEG00000008451) #17	KANK1 (ENSNLEG00000008510) #18	ENSNLEG00000018709	DMRT1 (ENSNLEG00000008544) #19	DMRT3 (ENSNLEG00000008556) #20	DMRT2 (ENSNLEG00000008564) #21	SMARCA2 (ENSNLEG00000008575) #22	ENSNLEG00000029055	ENSNLEG00000008695	VLDLR (ENSNLEG00000008596)	KCNV2 (ENSNLEG00000008701)	PUM3 (ENSNLEG00000008712)	ENSNLEG00000029981	RFX3 (ENSNLEG00000008785)	ENSNLEG00000028743	ENSNLEG00000034817	ENSNLEG00000035119	SLC1A1 (ENSNLEG00000031411)	SPATA6L (ENSNLEG00000008860)	ENSNLEG00000028049	CDC37L1 (ENSNLEG00000008879)	AK3 (ENSNLEG00000008885)
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523.r #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523.r #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cebidae_a	ANCESTRAL SPECIES	92	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523.r #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00390000004049.ab	ENSGT00530000063402.a.h	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Capuchin	MODERN SPECIES	227																SMARCA2 (ENSCCAG00000030636) #22	ENSCCAG00000032291	ENSCCAG00000024458	VLDLR (ENSCCAG00000034631)	KCNV2 (ENSCCAG00000006608)	PUM3 (ENSCCAG00000032650)	ENSCCAG00000023250	ENSCCAG00000034048	ENSCCAG00000032475	RFX3 (ENSCCAG00000030352)	GLIS3 (ENSCCAG00000025272)	SLC1A1 (ENSCCAG00000024828)	SPATA6L (ENSCCAG00000019855)	PLPP6 (ENSCCAG00000017149)	CDC37L1 (ENSCCAG00000036002)	AK3 (ENSCCAG00000024553)
Bolivian squirrel monkey	MODERN SPECIES	118	ENTREP1 (ENSSBOG00000021064)	FXN (ENSSBOG00000022179)	TJP2 (ENSSBOG00000035815)	PIP5K1B (ENSSBOG00000027534)	TMEM252 (ENSSBOG00000022996) #12	PGM5 (ENSSBOG00000030297) #13	ENSSBOG00000020533	ENSSBOG00000031336 #14	ENSSBOG00000032210 #16	DOCK8 (ENSSBOG00000020599) #17	KANK1 (ENSSBOG00000032525) #18	DMRT1 (ENSSBOG00000027694) #19	DMRT3 (ENSSBOG00000027585) #20	DMRT2 (ENSSBOG00000010665) #21	ENSSBOG00000019886	SMARCA2 (ENSSBOG00000034827) #22	ENSSBOG00000020747	VLDLR (ENSSBOG00000031091)	KCNV2 (ENSSBOG00000023504)	PUM3 (ENSSBOG00000028066)	ENSSBOG00000022458	ENSSBOG00000026932	ENSSBOG00000016907	RFX3 (ENSSBOG00000031103)	GLIS3 (ENSSBOG00000032997)	ENSSBOG00000019687	SLC1A1 (ENSSBOG00000032684)	SPATA6L (ENSSBOG00000026985)	ENSSBOG00000022998	PLPP6 (ENSSBOG00000019035)	CDC37L1 (ENSSBOG00000032737)
Marmoset	MODERN SPECIES		ENSCJAG00000054232	ENSCJAG00000032275 #14	ENSCJAG00000003147	ENSCJAG00000074827	ENSCJAG00000085396	ENSCJAG00000073324	ENSCJAG00000040149	ENSCJAG00000010423 #14	ENSCJAG00000054365	ENSCJAG00000078334	DOCK8 (ENSCJAG00000010485) #17	KANK1 (ENSCJAG00000010595) #18	ENSCJAG00000084547	DMRT3 (ENSCJAG00000063670) #20	DMRT2 (ENSCJAG00000010690) #21	SMARCA2 (ENSCJAG00000010710) #22	ENSCJAG00000042690	VLDLR (ENSCJAG00000010772)	KCNV2 (ENSCJAG00000042809)	PUM3 (ENSCJAG00000010917)	RFX3 (ENSCJAG00000010996)	GLIS3 (ENSCJAG00000011083)	ENSCJAG00000073768	SLC1A1 (ENSCJAG00000011113)	SPATA6L (ENSCJAG00000011136)	PLPP6 (ENSCJAG00000063898)	AK3 (ENSCJAG00000011188)	CDC37L1 (ENSCJAG00000011155)	ENSCJAG00000059464	RCL1 (ENSCJAG00000011202)	JAK2 (ENSCJAG00000011228)
Mas night monkey	MODERN SPECIES	599												DMRT1 (ENSANAG00000030765) #19	DMRT3 (ENSANAG00000027840) #20	DMRT2 (ENSANAG00000020591) #21	ENSANAG00000018592	SMARCA2 (ENSANAG00000026498) #22	ENSANAG00000029407	VLDLR (ENSANAG00000020851)	KCNV2 (ENSANAG00000035114)	PUM3 (ENSANAG00000024520)	ENSANAG00000036903	RFX3 (ENSANAG00000038145)	GLIS3 (ENSANAG00000038022)	SLC1A1 (ENSANAG00000032125)	PLPP6 (ENSANAG00000019076)	SPATA6L (ENSANAG00000030395)	ENSANAG00000029767	CDC37L1 (ENSANAG00000028426)	AK3 (ENSANAG00000037726)	RCL1 (ENSANAG00000037372)	JAK2 (ENSANAG00000027034)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5009												CUNH11orf74 (ENSTSYG00000011833)	TRAF6 (ENSTSYG00000028225)	PRR5L (ENSTSYG00000031790)	ENSTSYG00000006704	SMARCA2 (ENSTSYG00000003858) #22
Tarsier	MODERN SPECIES	6262																ENSTSYG00000036848 #22
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523.s #14	ENSGT00410000028750 #16	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896.q	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a
Greater bamboo lemur	MODERN SPECIES	152	ENTREP1 (ENSPSMG00000025763)	TJP2 (ENSPSMG00000025742)	FXN (ENSPSMG00000025681)	PIP5K1B (ENSPSMG00000025678)	PABIR1 (ENSPSMG00000025658)	TMEM252 (ENSPSMG00000025655) #12	PGM5 (ENSPSMG00000025652) #13	ENSPSMG00000025644	ENSPSMG00000025574 #14	DOCK8 (ENSPSMG00000025332) #17	KANK1 (ENSPSMG00000025243) #18	DMRT1 (ENSPSMG00000025222) #19	DMRT3 (ENSPSMG00000025210) #20	DMRT2 (ENSPSMG00000025206) #21	ENSPSMG00000025195	SMARCA2 (ENSPSMG00000025173) #22	ENSPSMG00000025075	VLDLR (ENSPSMG00000025041)	KCNV2 (ENSPSMG00000024960)	ENSPSMG00000024956	ENSPSMG00000024950	RFX3 (ENSPSMG00000024938)	GLIS3 (ENSPSMG00000024897)	SLC1A1 (ENSPSMG00000024890)	PLPP6 (ENSPSMG00000024881)	SPATA6L (ENSPSMG00000024878)	CDC37L1 (ENSPSMG00000024864)	AK3 (ENSPSMG00000024859)	RCL1 (ENSPSMG00000024848)	JAK2 (ENSPSMG00000024838)	ENSPSMG00000024795
Coquerels sifaka	MODERN SPECIES	549																SMARCA2 (ENSPCOG00000025709) #22	ENSPCOG00000026110	ENSPCOG00000019796	VLDLR (ENSPCOG00000026506)	KCNV2 (ENSPCOG00000023607)	PUM3 (ENSPCOG00000027325)	RFX3 (ENSPCOG00000022172)	GLIS3 (ENSPCOG00000022619)	SLC1A1 (ENSPCOG00000013653)	SPATA6L (ENSPCOG00000001879)	PLPP6 (ENSPCOG00000013586)	CDC37L1 (ENSPCOG00000025983)	ENSPCOG00000024436	RCL1 (ENSPCOG00000009611)
Mouse lemur	MODERN SPECIES	1	APBA1 (ENSMICG00000009602)	ENTREP1 (ENSMICG00000002917)	TJP2 (ENSMICG00000002908)	FXN (ENSMICG00000044611)	PIP5K1B (ENSMICG00000004323)	TMEM252 (ENSMICG00000044472) #12	PGM5 (ENSMICG00000015998) #13	ENSMICG00000036465	ENSMICG00000005330	ENSMICG00000031232	DOCK8 (ENSMICG00000008267) #17	KANK1 (ENSMICG00000010410) #18	DMRT1 (ENSMICG00000010417) #19	DMRT3 (ENSMICG00000044854) #20	DMRT2 (ENSMICG00000010426) #21	SMARCA2 (ENSMICG00000005162) #22	ENSMICG00000005190	VLDLR (ENSMICG00000005182)	KCNV2 (ENSMICG00000005193)	PUM3 (ENSMICG00000045916)	ENSMICG00000029542	RFX3 (ENSMICG00000011871)	ENSMICG00000041775	ENSMICG00000031277	SLC1A1 (ENSMICG00000005171)	SPATA6L (ENSMICG00000017688)	CDC37L1 (ENSMICG00000017690)	ENSMICG00000013112	RCL1 (ENSMICG00000015562)	JAK2 (ENSMICG00000003885)	INSL6 (ENSMICG00000044551)
Bushbaby	MODERN SPECIES	121	TJP2 (ENSOGAG00000014757)	ENSOGAG00000031105	PIP5K1B (ENSOGAG00000009431)	PABIR1 (ENSOGAG00000024522)	TMEM252 (ENSOGAG00000015132) #12	PGM5 (ENSOGAG00000015121) #13	ENSOGAG00000029277	ENSOGAG00000002011 #14	DOCK8 (ENSOGAG00000004639) #17	ENSOGAG00000031226	KANK1 (ENSOGAG00000001985) #18	DMRT1 (ENSOGAG00000001989) #19	DMRT3 (ENSOGAG00000026565) #20	DMRT2 (ENSOGAG00000001994) #21	ENSOGAG00000025218	SMARCA2 (ENSOGAG00000017053) #22	VLDLR (ENSOGAG00000013312)	KCNV2 (ENSOGAG00000030433)	ENSOGAG00000008125	RFX3 (ENSOGAG00000007762)	GLIS3 (ENSOGAG00000007376)	SLC1A1 (ENSOGAG00000007464)	PLPP6 (ENSOGAG00000007472)	SPATA6L (ENSOGAG00000007468)	CDC37L1 (ENSOGAG00000007475)	AK3 (ENSOGAG00000007477)	RCL1 (ENSOGAG00000007480)	JAK2 (ENSOGAG00000012246)	ENSOGAG00000009500	PLGRKT (ENSOGAG00000003280)	CD274 (ENSOGAG00000003282)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Tree shrew	MODERN SPECIES	5134															ENSTBEG00000008665	SMARCA2 (ENSTBEG00000008767) #22
Glires	ANCESTRAL SPECIES	9	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Kangaroo rat	MODERN SPECIES	359	Mamdc2 (ENSDORG00000000884)	Ptar1 (ENSDORG00000005855)	Apba1 (ENSDORG00000003149)	Entrep1 (ENSDORG00000001566)	Tjp2 (ENSDORG00000009039)	Fxn (ENSDORG00000027975)	Pip5k1b (ENSDORG00000001153)	Fam122a (ENSDORG00000001152)	Tmem252 (ENSDORG00000005477) #12	Pgm5 (ENSDORG00000005476) #13	Cbwd1 (ENSDORG00000004917) #14	Dock8 (ENSDORG00000007203) #17	Kank1 (ENSDORG00000015159) #18	ENSDORG00000006363 #19	Dmrt2 (ENSDORG00000007216) #21	Smarca2 (ENSDORG00000014832) #22	Vldlr (ENSDORG00000012954)	Kcnv2 (ENSDORG00000011511)	ENSDORG00000003628	Rfx3 (ENSDORG00000013906)	ENSDORG00000025494	Slc1a1 (ENSDORG00000010091)	Plpp6 (ENSDORG00000003071)	Cdc37l1 (ENSDORG00000023648)	Ak3 (ENSDORG00000010355)	Rcl1 (ENSDORG00000015645)	Jak2 (ENSDORG00000011552)	ENSDORG00000000109	ENSDORG00000028062
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lesser Egyptian jerboa	MODERN SPECIES	50	Tjp2 (ENSJJAG00000003581)	Fxn (ENSJJAG00000022666)	Pip5k1b (ENSJJAG00000018154)	Fam122a (ENSJJAG00000009421)	Tmem252 (ENSJJAG00000015659) #12	Pgm5 (ENSJJAG00000022690) #13	ENSJJAG00000013817 #14	ENSJJAG00000009646 #17	ENSJJAG00000017231 #17	ENSJJAG00000015498 #17	Kank1 (ENSJJAG00000018774) #18	Dmrt1 (ENSJJAG00000016690) #19	Dmrt3 (ENSJJAG00000022573) #20	Dmrt2 (ENSJJAG00000023959) #21	ENSJJAG00000010719	Smarca2 (ENSJJAG00000010867) #22	Vldlr (ENSJJAG00000016440)	ENSJJAG00000000409	Kcnv2 (ENSJJAG00000016782)	Pum3 (ENSJJAG00000012563)	ENSJJAG00000010263	Rfx3 (ENSJJAG00000010280)	ENSJJAG00000024335	Glis3 (ENSJJAG00000011399)	Slc1a1 (ENSJJAG00000018507)	ENSJJAG00000020462	Spata6l (ENSJJAG00000022941)	Plpp6 (ENSJJAG00000011277)	Cdc37l1 (ENSJJAG00000024330)	Ak3 (ENSJJAG00000023388)	ENSJJAG00000022803
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166												Dmrt1 (ENSNGAG00000001295) #19	Dmrt3 (ENSNGAG00000020423) #20	Dmrt2 (ENSNGAG00000020041) #21	ENSNGAG00000013866	Smarca2 (ENSNGAG00000000108) #22	ENSNGAG00000012912	Vldlr (ENSNGAG00000003966)	Kcnv2 (ENSNGAG00000020439)	Pum3 (ENSNGAG00000019468)	Rfx3 (ENSNGAG00000016470)	Glis3 (ENSNGAG00000006111)	ENSNGAG00000018137	Slc1a1 (ENSNGAG00000014723)	Plpp6 (ENSNGAG00000014756)	Spata6l (ENSNGAG00000017948)	Cdc37l1 (ENSNGAG00000018155)	Ak3 (ENSNGAG00000016647)	Rcl1 (ENSNGAG00000015327)	Jak2 (ENSNGAG00000000096)
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Murinae	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Mus	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Steppe mouse	MODERN SPECIES	3106																Smarca2 (ENSMSIG00000022131) #22	Gm815 (ENSMSIG00000023064)	Vldlr (ENSMSIG00000023084)	ENSMSIG00000023160	Kcnv2 (ENSMSIG00000023184)	Pum3 (ENSMSIG00000023194)	Rfx3 (ENSMSIG00000023245)	ENSMSIG00000023373	Glis3 (ENSMSIG00000023382)
spretus	MODERN SPECIES	10	MGP_SPRETEiJ_G0023744	Apba1 (MGP_SPRETEiJ_G0023745)	Entrep1 (MGP_SPRETEiJ_G0023746)	Tjp2 (MGP_SPRETEiJ_G0023747)	Fxn (MGP_SPRETEiJ_G0023748)	Pip5k1b (MGP_SPRETEiJ_G0023749)	Fam122a (MGP_SPRETEiJ_G0023750)	Tmem252 (MGP_SPRETEiJ_G0023751) #12	Pgm5 (MGP_SPRETEiJ_G0023752) #13	Foxd4 (MGP_SPRETEiJ_G0023753)	Cbwd1 (MGP_SPRETEiJ_G0023754) #14	Dock8 (MGP_SPRETEiJ_G0023755) #17	Kank1 (MGP_SPRETEiJ_G0023756) #18	Dmrt3 (MGP_SPRETEiJ_G0023757) #20	Dmrt2 (MGP_SPRETEiJ_G0023758) #21	Smarca2 (MGP_SPRETEiJ_G0023759) #22	MGP_SPRETEiJ_G0023760	Vldlr (MGP_SPRETEiJ_G0023761)	Kcnv2 (MGP_SPRETEiJ_G0023762)	Pum3 (MGP_SPRETEiJ_G0023763)	Rfx3 (MGP_SPRETEiJ_G0023764)	Glis3 (MGP_SPRETEiJ_G0023765)	Slc1a1 (MGP_SPRETEiJ_G0023766)	Spata6l (MGP_SPRETEiJ_G0023767)	Plpp6 (MGP_SPRETEiJ_G0023768)	Cdc37l1 (MGP_SPRETEiJ_G0023769)	Ak3 (MGP_SPRETEiJ_G0023770)	Rcl1 (MGP_SPRETEiJ_G0023771)	Jak2 (MGP_SPRETEiJ_G0023772)	Insl6 (MGP_SPRETEiJ_G0023773)	Rln1 (MGP_SPRETEiJ_G0023774)
Mouse	MODERN SPECIES	10	Entrep1 (ENSMUSG00000071604)	Tjp2 (ENSMUSG00000024812)	Fxn (ENSMUSG00000059363)	Pip5k1b (ENSMUSG00000024867)	Fam122a (ENSMUSG00000074922)	Tmem252 (ENSMUSG00000048572) #12	Pgm5 (ENSMUSG00000041731) #13	Gm10053 (ENSMUSG00000058927)	Foxd4 (ENSMUSG00000051490)	Cbwd1 (ENSMUSG00000024878) #14	Dock8 (ENSMUSG00000052085) #17	Kank1 (ENSMUSG00000032702) #18	Dmrt1 (ENSMUSG00000024837) #19	Dmrt3 (ENSMUSG00000042372) #20	Dmrt2 (ENSMUSG00000048138) #21	Smarca2 (ENSMUSG00000024921) #22	Gm815 (ENSMUSG00000074913)	Vldlr (ENSMUSG00000024924)	Kcnv2 (ENSMUSG00000047298)	Pum3 (ENSMUSG00000041360)	Rfx3 (ENSMUSG00000040929)	Glis3 (ENSMUSG00000052942)	Slc1a1 (ENSMUSG00000024935)	Spata6l (ENSMUSG00000064202)	Plpp6 (ENSMUSG00000040105)	Cdc37l1 (ENSMUSG00000024780)	Ak3 (ENSMUSG00000024782)	Rcl1 (ENSMUSG00000024785)	Jak2 (ENSMUSG00000024789)	Insl6 (ENSMUSG00000050957)	Rln1 (ENSMUSG00000039097)
Ryukyu mouse	MODERN SPECIES	10	Apba1 (MGP_CAROLIEiJ_G0022826)	Entrep1 (MGP_CAROLIEiJ_G0022827)	Tjp2 (MGP_CAROLIEiJ_G0022828)	Fxn (MGP_CAROLIEiJ_G0022829)	Pip5k1b (MGP_CAROLIEiJ_G0022830)	Fam122a (MGP_CAROLIEiJ_G0022831)	Tmem252 (MGP_CAROLIEiJ_G0022832) #12	Pgm5 (MGP_CAROLIEiJ_G0022833) #13	Foxd4 (MGP_CAROLIEiJ_G0022834)	Cbwd1 (MGP_CAROLIEiJ_G0022835) #14	Dock8 (MGP_CAROLIEiJ_G0022836) #17	Kank1 (MGP_CAROLIEiJ_G0022837) #18	Dmrt1 (MGP_CAROLIEiJ_G0022838) #19	Dmrt3 (MGP_CAROLIEiJ_G0022839) #20	Dmrt2 (MGP_CAROLIEiJ_G0022840) #21	Smarca2 (MGP_CAROLIEiJ_G0022841) #22	MGP_CAROLIEiJ_G0022842	Vldlr (MGP_CAROLIEiJ_G0022843)	Kcnv2 (MGP_CAROLIEiJ_G0022844)	Pum3 (MGP_CAROLIEiJ_G0022845)	Rfx3 (MGP_CAROLIEiJ_G0022846)	Glis3 (MGP_CAROLIEiJ_G0022847)	Slc1a1 (MGP_CAROLIEiJ_G0022848)	Spata6l (MGP_CAROLIEiJ_G0022849)	Plpp6 (MGP_CAROLIEiJ_G0022850)	Cdc37l1 (MGP_CAROLIEiJ_G0022851)	Ak3 (MGP_CAROLIEiJ_G0022852)	Rcl1 (MGP_CAROLIEiJ_G0022853)	Jak2 (MGP_CAROLIEiJ_G0022854)	Insl6 (MGP_CAROLIEiJ_G0022855)	Rln1 (MGP_CAROLIEiJ_G0022856)
Shrew mouse	MODERN SPECIES		Ptar1 (MGP_PahariEiJ_G0014318)	Apba1 (MGP_PahariEiJ_G0014319)	Entrep1 (MGP_PahariEiJ_G0014320)	Tjp2 (MGP_PahariEiJ_G0014321)	MGP_PahariEiJ_G0014322	Fam122a (MGP_PahariEiJ_G0014324)	Tmem252 (MGP_PahariEiJ_G0014325) #12	Pgm5 (MGP_PahariEiJ_G0014326) #13	Foxd4 (MGP_PahariEiJ_G0014327)	Cbwd1 (MGP_PahariEiJ_G0014328) #14	Dock8 (MGP_PahariEiJ_G0014329) #17	Kank1 (MGP_PahariEiJ_G0014330) #18	Dmrt1 (MGP_PahariEiJ_G0014331) #19	Dmrt3 (MGP_PahariEiJ_G0014332) #20	Dmrt2 (MGP_PahariEiJ_G0014333) #21	Smarca2 (MGP_PahariEiJ_G0014334) #22	MGP_PahariEiJ_G0014335	Vldlr (MGP_PahariEiJ_G0014336)	Kcnv2 (MGP_PahariEiJ_G0014337)	Pum3 (MGP_PahariEiJ_G0014338)	Rfx3 (MGP_PahariEiJ_G0014339)	Glis3 (MGP_PahariEiJ_G0014340)	Slc1a1 (MGP_PahariEiJ_G0014341)	Spata6l (MGP_PahariEiJ_G0014342)	Plpp6 (MGP_PahariEiJ_G0014343)	Cdc37l1 (MGP_PahariEiJ_G0014344)	Ak3 (MGP_PahariEiJ_G0014345)	Rcl1 (MGP_PahariEiJ_G0014346)	Jak2 (MGP_PahariEiJ_G0014347)	Insl6 (MGP_PahariEiJ_G0014348)	Rln1 (MGP_PahariEiJ_G0014349)
Rat	MODERN SPECIES		Tjp2 (ENSRNOG00000015030)	Fxn (ENSRNOG00000015213)	Pip5k1b (ENSRNOG00000015232)	Pabir1 (ENSRNOG00000051051)	Tmem252 (ENSRNOG00000025476) #12	Pgm5 (ENSRNOG00000015406) #13	Foxd4 (ENSRNOG00000050486)	Zng1a (ENSRNOG00000015516) #14	Dock8 (ENSRNOG00000015894) #17	Hmgb1-ps4 (ENSRNOG00000065098)	Kank1 (ENSRNOG00000016023) #18	Dmrt1 (ENSRNOG00000016075) #19	Dmrt3 (ENSRNOG00000016284) #20	Dmrt2 (ENSRNOG00000016301) #21	ENSRNOG00000062555	Smarca2 (ENSRNOG00000011931) #22	ENSRNOG00000069446	Vldlr (ENSRNOG00000027491)	ENSRNOG00000062591	Kcnv2 (ENSRNOG00000012566)	Pum3 (ENSRNOG00000012574)	Rfx3 (ENSRNOG00000014486)	ENSRNOG00000066761	Glis3 (ENSRNOG00000014768)	Slc1a1 (ENSRNOG00000014816)	ENSRNOG00000065811	Spata6l (ENSRNOG00000015137)	Plpp6 (ENSRNOG00000015268)	RGD1565057 (ENSRNOG00000069618)	Cdc37l1 (ENSRNOG00000010967)	Ak3 (ENSRNOG00000052506)
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000017892	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Northern American deer mouse	MODERN SPECIES		Ptar1 (ENSPEMG00000018036)	Apba1 (ENSPEMG00000010980)	Entrep1 (ENSPEMG00000020060)	Tjp2 (ENSPEMG00000020250)	ENSPEMG00000019884	Pip5k1b (ENSPEMG00000020095)	Fam122a (ENSPEMG00000012823)	Tmem252 (ENSPEMG00000007137) #12	Pgm5 (ENSPEMG00000020205) #13	Cbwd1 (ENSPEMG00000000396) #14	Dock8 (ENSPEMG00000014001) #17	Kank1 (ENSPEMG00000013916) #18	Dmrt1 (ENSPEMG00000019943) #19	Dmrt3 (ENSPEMG00000019990) #20	Dmrt2 (ENSPEMG00000019767) #21	Smarca2 (ENSPEMG00000019821) #22	ENSPEMG00000021666	Vldlr (ENSPEMG00000022250)	Kcnv2 (ENSPEMG00000020138)	ENSPEMG00000030423	ENSPEMG00000019340	Rfx3 (ENSPEMG00000019731)	Glis3 (ENSPEMG00000020002)	ENSPEMG00000004286	Slc1a1 (ENSPEMG00000009611)	ENSPEMG00000021571	Spata6l (ENSPEMG00000023122)	Plpp6 (ENSPEMG00000007181)	Cdc37l1 (ENSPEMG00000000344)	Ak3 (ENSPEMG00000022781)	Rcl1 (ENSPEMG00000023275)
Prairie vole	MODERN SPECIES	16	Apba1 (ENSMOCG00000009892)	Entrep1 (ENSMOCG00000018310)	Tjp2 (ENSMOCG00000012468)	Fxn (ENSMOCG00000014625)	Pip5k1b (ENSMOCG00000017594)	ENSMOCG00000010285	Fam122a (ENSMOCG00000001051)	Tmem252 (ENSMOCG00000017938) #12	Pgm5 (ENSMOCG00000011710) #13	Cbwd1 (ENSMOCG00000015974) #14	Dock8 (ENSMOCG00000014249) #17	Kank1 (ENSMOCG00000020725) #18	ENSMOCG00000017971 #19	Dmrt3 (ENSMOCG00000015270) #20	Dmrt2 (ENSMOCG00000016701) #21	Smarca2 (ENSMOCG00000001611) #22	Vldlr (ENSMOCG00000004269)	Kcnv2 (ENSMOCG00000014872)	ENSMOCG00000019519	Rfx3 (ENSMOCG00000018931)	Glis3 (ENSMOCG00000009953)	Slc1a1 (ENSMOCG00000017507)	ENSMOCG00000018225	Spata6l (ENSMOCG00000022082)	Plpp6 (ENSMOCG00000001135)	Cdc37l1 (ENSMOCG00000018341)	Ak3 (ENSMOCG00000010856)	Rcl1 (ENSMOCG00000012145)	Jak2 (ENSMOCG00000013580)	Insl6 (ENSMOCG00000015208)	Rln1 (ENSMOCG00000012108)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Chinese hamster chok1gshd	MODERN SPECIES	401	Entrep1 (ENSCGRG00001002309)	Tjp2 (ENSCGRG00001022408)	Fxn (ENSCGRG00001003906)	ENSCGRG00001013409	Pip5k1b (ENSCGRG00001017408)	Fam122a (ENSCGRG00001012685)	Tmem252 (ENSCGRG00001019081) #12	Pgm5 (ENSCGRG00001020037) #13	Foxd4 (ENSCGRG00001006276)	Cbwd1 (ENSCGRG00001020851) #14	Dock8 (ENSCGRG00001013079) #17	Kank1 (ENSCGRG00001020355) #18	Dmrt1 (ENSCGRG00001000625) #19	Dmrt3 (ENSCGRG00001005036) #20	Dmrt2 (ENSCGRG00001007562) #21	Smarca2 (ENSCGRG00001002323) #22	Vldlr (ENSCGRG00001014399)	ENSCGRG00001017895	Kcnv2 (ENSCGRG00001018140)	Pum3 (ENSCGRG00001016402)	Rfx3 (ENSCGRG00001021745)	Glis3 (ENSCGRG00001014233)	Slc1a1 (ENSCGRG00001022336)	ENSCGRG00001023585	Spata6l (ENSCGRG00001002881)	Plpp6 (ENSCGRG00001012981)	Cdc37l1 (ENSCGRG00001000264)	AK3 (ENSCGRG00001007296)	Rcl1 (ENSCGRG00001013748)	Jak2 (ENSCGRG00001015840)	Insl6 (ENSCGRG00001020673)
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	617	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912)	Fam122a (ENSMAUG00000002386)	Tmem252 (ENSMAUG00000008962) #12	Pgm5 (ENSMAUG00000009185) #13	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #17	ENSMAUG00000009191 #17	Kank1 (ENSMAUG00000009263) #18	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727)	Pum3 (ENSMAUG00000009733)	Rfx3 (ENSMAUG00000009987)	Slc1a1 (ENSMAUG00000009046)	Plpp6 (ENSMAUG00000001915)	Spata6l (ENSMAUG00000010530)	Cdc37l1 (ENSMAUG00000008847)	Ak3 (ENSMAUG00000008253)	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)	Plgrkt (ENSMAUG00000007601)	Cd274 (ENSMAUG00000008788)
Golden Hamster	MODERN SPECIES	617	Entrep1 (ENSMAUG00000010196)	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912)	Fam122a (ENSMAUG00000002386)	Tmem252 (ENSMAUG00000008962) #12	Pgm5 (ENSMAUG00000009185) #13	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #17	ENSMAUG00000009191 #17	Kank1 (ENSMAUG00000009263) #18	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727)	Pum3 (ENSMAUG00000009733)	Rfx3 (ENSMAUG00000009987)	Slc1a1 (ENSMAUG00000009046)	Plpp6 (ENSMAUG00000001915)	Spata6l (ENSMAUG00000010530)	Cdc37l1 (ENSMAUG00000008847)	Ak3 (ENSMAUG00000008253)	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)	Plgrkt (ENSMAUG00000007601)
Golden Hamster	MODERN SPECIES	617	Apba1 (ENSMAUG00000009290)	Entrep1 (ENSMAUG00000010196)	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912)	Fam122a (ENSMAUG00000002386)	Tmem252 (ENSMAUG00000008962) #12	Pgm5 (ENSMAUG00000009185) #13	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #17	ENSMAUG00000009191 #17	Kank1 (ENSMAUG00000009263) #18	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727)	Pum3 (ENSMAUG00000009733)	Rfx3 (ENSMAUG00000009987)	Slc1a1 (ENSMAUG00000009046)	Plpp6 (ENSMAUG00000001915)	Spata6l (ENSMAUG00000010530)	Cdc37l1 (ENSMAUG00000008847)	Ak3 (ENSMAUG00000008253)	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Marmotini_b	ANCESTRAL SPECIES	88	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Squirrel	MODERN SPECIES	103	TJP2 (ENSSTOG00000011181)	ENSSTOG00000033140	PIP5K1B (ENSSTOG00000023540)	PABIR1 (ENSSTOG00000022211)	TMEM252 (ENSSTOG00000008860) #12	PGM5 (ENSSTOG00000008834) #13	ENSSTOG00000029964	ENSSTOG00000028764 #14	ENSSTOG00000031824	DOCK8 (ENSSTOG00000016411) #17	ENSSTOG00000030036	KANK1 (ENSSTOG00000010218) #18	DMRT1 (ENSSTOG00000010235) #19	DMRT3 (ENSSTOG00000023574) #20	DMRT2 (ENSSTOG00000026909) #21	SMARCA2 (ENSSTOG00000006812) #22	ENSSTOG00000031987	VLDLR (ENSSTOG00000006880)	KCNV2 (ENSSTOG00000020003)	PUM3 (ENSSTOG00000009586)	RFX3 (ENSSTOG00000006974)	GLIS3 (ENSSTOG00000000302)	ENSSTOG00000031708	SLC1A1 (ENSSTOG00000023583)	PLPP6 (ENSSTOG00000025831)	SPATA6L (ENSSTOG00000000018)	CDC37L1 (ENSSTOG00000000020)	AK3 (ENSSTOG00000000021)	RCL1 (ENSSTOG00000000023)	JAK2 (ENSSTOG00000006679)	ENSSTOG00000016298
Arctic ground squirrel	MODERN SPECIES	335															DMRT2 (ENSUPAG00010017350) #21	SMARCA2 (ENSUPAG00010016919) #22	ENSUPAG00010016900	VLDLR (ENSUPAG00010016811)	KCNV2 (ENSUPAG00010016794)	PUM3 (ENSUPAG00010016775)
Alpin marmot	MODERN SPECIES	32	FXN (ENSMMMG00000003605)	PIP5K1B (ENSMMMG00000003495)	PABIR1 (ENSMMMG00000003490)	TMEM252 (ENSMMMG00000003476) #12	PGM5 (ENSMMMG00000003460) #13	ENSMMMG00000003446	ENSMMMG00000003411 #14	DOCK8 (ENSMMMG00000003328) #17	ENSMMMG00000003304	ENSMMMG00000003301	KANK1 (ENSMMMG00000003281) #18	DMRT1 (ENSMMMG00000003270) #19	DMRT3 (ENSMMMG00000003239) #20	DMRT2 (ENSMMMG00000003238) #21	ENSMMMG00000003212	SMARCA2 (ENSMMMG00000002811) #22	ENSMMMG00000002785	ENSMMMG00000002765	VLDLR (ENSMMMG00000002594)	ENSMMMG00000002572	KCNV2 (ENSMMMG00000002550)	PUM3 (ENSMMMG00000002513)	ENSMMMG00000002504	GLIS3 (ENSMMMG00000002430)	ENSMMMG00000002416	ENSMMMG00000002405	SLC1A1 (ENSMMMG00000002380)	SPATA6L (ENSMMMG00000002361)	PLPP6 (ENSMMMG00000002356)	CDC37L1 (ENSMMMG00000002322)	AK3 (ENSMMMG00000002286)
Eurasian red squirrel	MODERN SPECIES	6	ENTREP1 (ENSSVLG00005022461)	TJP2 (ENSSVLG00005022528)	ENSSVLG00005022798	PIP5K1B (ENSSVLG00005022876)	PABIR1 (ENSSVLG00005023031)	TMEM252 (ENSSVLG00005023049) #12	PGM5 (ENSSVLG00005023081) #13	ENSSVLG00005023212	ENSSVLG00005023230 #14	ENSSVLG00005023280	DOCK8 (ENSSVLG00005023344) #17	KANK1 (ENSSVLG00005023807) #18	DMRT1 (ENSSVLG00005023845) #19	DMRT3 (ENSSVLG00005023888) #20	DMRT2 (ENSSVLG00005023918) #21	SMARCA2 (ENSSVLG00005024009) #22	ENSSVLG00005024201	VLDLR (ENSSVLG00005024232)	KCNV2 (ENSSVLG00005024318)	PUM3 (ENSSVLG00005024338)	ENSSVLG00005024401	RFX3 (ENSSVLG00005024420)	GLIS3 (ENSSVLG00005024543)	SLC1A1 (ENSSVLG00005024569)	SPATA6L (ENSSVLG00005024615)	PLPP6 (ENSSVLG00005024689)	CDC37L1 (ENSSVLG00005024699)	ENSSVLG00005024721	RCL1 (ENSSVLG00005024752)	JAK2 (ENSSVLG00005024808)	INSL6 (ENSSVLG00005024849)
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Naked mole-rat female	MODERN SPECIES	3	TMEM252 (ENSHGLG00000033131) #12	PGM5 (ENSHGLG00000013086) #13	ENSHGLG00000046909	CBWD3 (ENSHGLG00000015962) #14	ENSHGLG00000020779	DOCK8 (ENSHGLG00000016578) #17	ENSHGLG00000050403	ENSHGLG00000045832	KANK1 (ENSHGLG00000012000) #18	DMRT1 (ENSHGLG00000043033) #19	DMRT3 (ENSHGLG00000012858) #20	ENSHGLG00000033430 #21	ENSHGLG00000036415	ENSHGLG00000035319	ENSHGLG00000013697	ENSHGLG00000005215 #22	ENSHGLG00000035043	ENSHGLG00000016566	VLDLR (ENSHGLG00000016113)	KCNV2 (ENSHGLG00000015810)	ENSHGLG00000015868	ENSHGLG00000016314	ENSHGLG00000042585	ENSHGLG00000019207	ENSHGLG00000018913	ENSHGLG00000015091	ENSHGLG00000032696	ENSHGLG00000017534	SLC1A1 (ENSHGLG00000015155)	PLPP6 (ENSHGLG00000038858)	SPATA6L (ENSHGLG00000018477)
Hystricomorpha_a	DUPLICATION
Hystricomorpha_a	DUPLICATION
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.a #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.a #22
Degu	MODERN SPECIES	257						NEK3 (ENSODEG00000001087)	CKAP2 (ENSODEG00000001025)	VPS36 (ENSODEG00000000909)	THSD1 (ENSODEG00000000849)	ENSODEG00000000791	ENSODEG00000000772	ENSODEG00000000759	ENSODEG00000000752	FOXO1 (ENSODEG00000000747)	ENSODEG00000000728	ENSODEG00000000717 #22	COG6 (ENSODEG00000003859)	LHFPL6 (ENSODEG00000003836)	ENSODEG00000003473	PROSER1 (ENSODEG00000003365)	ENSODEG00000003312	ENSODEG00000003298	ENSODEG00000003236	TWSG1 (ENSODEG00000003220)	RALBP1 (ENSODEG00000001763)	PPP4R1 (ENSODEG00000001319)	RAB31 (ENSODEG00000001085)	VAPA (ENSODEG00000001065)	APCDD1 (ENSODEG00000001023)	ENSODEG00000000963	PIEZO2 (ENSODEG00000000546)
Guinea pig	MODERN SPECIES	13	ENSCPOG00000031141	ENSCPOG00000034500	TRDC (ENSCPOG00000000844)	ENSCPOG00000033000	ENSCPOG00000040263	OR4E2 (ENSCPOG00000026054)	OR10G2 (ENSCPOG00000039240)	SALL2 (ENSCPOG00000040220)	METTL3 (ENSCPOG00000002545)	TOX4 (ENSCPOG00000025504)	RAB2B (ENSCPOG00000026575)	CHD8 (ENSCPOG00000002538)	SUPT16H (ENSCPOG00000002534)	RPGRIP1 (ENSCPOG00000002526)	ENSCPOG00000001474	ENSCPOG00000035385 #22	TMEM253 (ENSCPOG00000031716)	ZNF219 (ENSCPOG00000022085)	ARHGEF40 (ENSCPOG00000012862)	ENSCPOG00000034881	RNASE13 (ENSCPOG00000019970)	TPPP2 (ENSCPOG00000023279)	NDRG2 (ENSCPOG00000002625)	ENSCPOG00000031550	ENSCPOG00000027335	ENSCPOG00000035683	ENSCPOG00000031798	ENSCPOG00000038384	ENSCPOG00000026584	ENSCPOG00000036707	OR6S1 (ENSCPOG00000011915)
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.b #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.b #22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	76	ENSODEG00000015493	UPK3B (ENSODEG00000015729)	DTX2 (ENSODEG00000015332)	ENSODEG00000016251	SSC4D (ENSODEG00000015613)	YWHAG (ENSODEG00000016579)	HSPB1 (ENSODEG00000015698)	ENSODEG00000016162	SRRM3 (ENSODEG00000015988)	ENSODEG00000015859	ENSODEG00000020351	STYXL1 (ENSODEG00000015904)	TMEM120A (ENSODEG00000015559)	POR (ENSODEG00000015517)	RHBDD2 (ENSODEG00000016225)	ENSODEG00000015918 #22	ENSODEG00000015707	ENSODEG00000020305	CCL24 (ENSODEG00000015142)	HIP1 (ENSODEG00000016265)	ENSODEG00000015346	NSUN5 (ENSODEG00000015132)	TRIM50 (ENSODEG00000015712)	FKBP6 (ENSODEG00000016257)	FZD9 (ENSODEG00000020544)	BAZ1B (ENSODEG00000015361)	BCL7B (ENSODEG00000015813)	TBL2 (ENSODEG00000016440)	MLXIPL (ENSODEG00000015218)	ENSODEG00000015421	DNAJC30 (ENSODEG00000015782)
Degu	MODERN SPECIES	53	CDKN1B (ENSODEG00000012537)	GPR19 (ENSODEG00000013191)	CREBL2 (ENSODEG00000009860)	ENSODEG00000019647	DUSP16 (ENSODEG00000009500)	ENSODEG00000008969	MANSC1 (ENSODEG00000009259)	LRP6 (ENSODEG00000008930)	BCL2L14 (ENSODEG00000008991) ##23	ETV6 (ENSODEG00000009759)	ENSODEG00000009522	ENSODEG00000008835	ENSODEG00000010368	ENSODEG00000009595	ENSODEG00000010351	ENSODEG00000009496 #22	ENSODEG00000009605	ENSODEG00000009202	CLEC12B (ENSODEG00000009413)	CLEC1B (ENSODEG00000009886)	CLEC1A (ENSODEG00000009200)	CLEC7A (ENSODEG00000008833)	TMEM52B (ENSODEG00000010426)	GABARAPL1 (ENSODEG00000010037)	ENSODEG00000009587	KLRD1 (ENSODEG00000010635)
Degu	MODERN SPECIES	47	ENSODEG00000007912	CC2D2A (ENSODEG00000008363)	FBXL5 (ENSODEG00000009798)	BST1 (ENSODEG00000008525)	CD38 (ENSODEG00000008127)	PROM1 (ENSODEG00000011756)	TAPT1 (ENSODEG00000007601)	LDB2 (ENSODEG00000010335)	QDPR (ENSODEG00000009810)	CLRN2 (ENSODEG00000009531)	ENSODEG00000008724	MED28 (ENSODEG00000010235)	FAM184B (ENSODEG00000008017)	NCAPG (ENSODEG00000007988)	ENSODEG00000007625	ENSODEG00000007550 #22	SLIT2 (ENSODEG00000011554)	ENSODEG00000009142	KCNIP4 (ENSODEG00000009132)	ADGRA3 (ENSODEG00000008912)	GBA3 (ENSODEG00000007983)	ENSODEG00000008409	ENSODEG00000008891	ENSODEG00000008421	LGI2 (ENSODEG00000009206)	SEPSECS (ENSODEG00000010607)	PI4K2B (ENSODEG00000008999)	ENSODEG00000007449	ENSODEG00000006972	ENSODEG00000019525	SLC34A2 (ENSODEG00000010839)
Degu	MODERN SPECIES	48	ENSODEG00000013469	SLC10A1 (ENSODEG00000013278)	ENSODEG00000014061	SMOC1 (ENSODEG00000012836)	ENSODEG00000014278	SLC8A3 (ENSODEG00000013865)	SYNJ2BP (ENSODEG00000014092)	FLVCR2 (ENSODEG00000013854)	ERG28 (ENSODEG00000013861)	ENSODEG00000012504	ENSODEG00000013591	TGFB3 (ENSODEG00000013103)	IFT43 (ENSODEG00000013768)	ENSODEG00000012743	GPATCH2L (ENSODEG00000013474)	ENSODEG00000013347 #22	ESRRB (ENSODEG00000013419)	VASH1 (ENSODEG00000012506)	ENSODEG00000019977	ANGEL1 (ENSODEG00000012416)	LRRC74A (ENSODEG00000013756)	CIPC (ENSODEG00000012302)	ZDHHC22 (ENSODEG00000016163)	TMEM63C (ENSODEG00000013078)	ENSODEG00000011875	ENSODEG00000014820	POMT2 (ENSODEG00000012188)	GSTZ1 (ENSODEG00000012019)	TMED8 (ENSODEG00000012850)	NOXRED1 (ENSODEG00000013652)	VIPAS39 (ENSODEG00000013197)
Degu	MODERN SPECIES	173	ENSODEG00000019887	PRXL2A (ENSODEG00000012446)	TSPAN14 (ENSODEG00000010478)	SH2D4B (ENSODEG00000013141)	NRG3 (ENSODEG00000011562)	ENSODEG00000012959	ENSODEG00000011340	ENSODEG00000012481	CDHR1 (ENSODEG00000010766)	LRIT2 (ENSODEG00000011609)	LRIT1 (ENSODEG00000012611)	RGR (ENSODEG00000011393)	CCSER2 (ENSODEG00000010793)	GRID1 (ENSODEG00000011958)	ENSODEG00000011516	ENSODEG00000019892 #22	ENSODEG00000011721	OPN4 (ENSODEG00000011887)	ENSODEG00000011383	ENSODEG00000019882	BMPR1A (ENSODEG00000011436)	ENSODEG00000012425	SNCG (ENSODEG00000012548)	ENSODEG00000012123	ENSODEG00000011593	SHLD2 (ENSODEG00000012114)	ENSODEG00000020251	ENSODEG00000011514	ZNF488 (ENSODEG00000011943)	RBP3 (ENSODEG00000012586)	GDF2 (ENSODEG00000012030)
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b.d #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250 #12	ENSGT00940000158126 #13	ENSGT00940000163353	ENSGT00640000091523 #14	ENSGT00940000155876 #17	ENSGT00940000154886.a.a #18	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b.d #22	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Long-tailed chinchilla	MODERN SPECIES	141	PTAR1 (ENSCLAG00000008830)	APBA1 (ENSCLAG00000006043)	ENTREP1 (ENSCLAG00000007506)	TJP2 (ENSCLAG00000012841)	FXN (ENSCLAG00000009225)	PIP5K1B (ENSCLAG00000011292)	TMEM252 (ENSCLAG00000005523) #12	PGM5 (ENSCLAG00000005854) #13	ENSCLAG00000006762	ENSCLAG00000005076 #14	DOCK8 (ENSCLAG00000005204) #17	KANK1 (ENSCLAG00000015509) #18	DMRT1 (ENSCLAG00000015238) #19	DMRT3 (ENSCLAG00000015537) #20	DMRT2 (ENSCLAG00000006168) #21	SMARCA2 (ENSCLAG00000014484) #22	VLDLR (ENSCLAG00000007543)	KCNV2 (ENSCLAG00000013226)	PUM3 (ENSCLAG00000011892)	RFX3 (ENSCLAG00000009044)	GLIS3 (ENSCLAG00000008116)	ENSCLAG00000009238	SLC1A1 (ENSCLAG00000009832)	ENSCLAG00000009476	SPATA6L (ENSCLAG00000010497)	PLPP6 (ENSCLAG00000017735)	CDC37L1 (ENSCLAG00000005805)	AK3 (ENSCLAG00000006329)	RCL1 (ENSCLAG00000007445)	JAK2 (ENSCLAG00000005091)	INSL6 (ENSCLAG00000007423)
Degu	MODERN SPECIES	128	FXN (ENSODEG00000003413)	PIP5K1B (ENSODEG00000003585)	ENSODEG00000003739	PABIR1 (ENSODEG00000019013)	TMEM252 (ENSODEG00000003841) #12	PGM5 (ENSODEG00000003917) #13	ENSODEG00000003983 #14	ENSODEG00000004467 #17	ENSODEG00000004602 #17	ENSODEG00000004711 #17	ENSODEG00000004719	KANK1 (ENSODEG00000004766) #18	DMRT1 (ENSODEG00000004898) #19	DMRT3 (ENSODEG00000004984) #20	DMRT2 (ENSODEG00000004992) #21	SMARCA2 (ENSODEG00000005452) #22	ENSODEG00000006378	ENSODEG00000003492	KCNV2 (ENSODEG00000003536)	ENSODEG00000003625	RFX3 (ENSODEG00000003682)	GLIS3 (ENSODEG00000003731)	SLC1A1 (ENSODEG00000003884)	ENSODEG00000003949	SPATA6L (ENSODEG00000004066)	PLPP6 (ENSODEG00000019026)	CDC37L1 (ENSODEG00000004185)	ENSODEG00000004121	RCL1 (ENSODEG00000004151)	JAK2 (ENSODEG00000004208)	ENSODEG00000004220
Guinea pig	MODERN SPECIES	21	PTAR1 (ENSCPOG00000008368)	APBA1 (ENSCPOG00000032780)	ENTREP1 (ENSCPOG00000003236)	TJP2 (ENSCPOG00000021062)	FXN (ENSCPOG00000004293)	PIP5K1B (ENSCPOG00000004288)	PABIR1 (ENSCPOG00000003280)	TMEM252 (ENSCPOG00000013771) #12	PGM5 (ENSCPOG00000015031) #13	ENSCPOG00000019718 #14	DOCK8 (ENSCPOG00000008366) #17	KANK1 (ENSCPOG00000008389) #18	DMRT1 (ENSCPOG00000005909) #19	DMRT3 (ENSCPOG00000005912) #20	DMRT2 (ENSCPOG00000008452) #21	SMARCA2 (ENSCPOG00000005475) #22	VLDLR (ENSCPOG00000007685)	KCNV2 (ENSCPOG00000032893)	ENSCPOG00000008552	RFX3 (ENSCPOG00000000900)	GLIS3 (ENSCPOG00000005523)	ENSCPOG00000030794	SLC1A1 (ENSCPOG00000011151)	PLPP6 (ENSCPOG00000012931)	SPATA6L (ENSCPOG00000012925)	CDC37L1 (ENSCPOG00000030938)	AK3 (ENSCPOG00000011927)	RCL1 (ENSCPOG00000015354)	JAK2 (ENSCPOG00000014653)	INSL6 (ENSCPOG00000002694)	ENSCPOG00000001365
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000154821.b #22
Pika	MODERN SPECIES	4399																SMARCA2 (ENSOPRG00000013474) #22
Rabbit	MODERN SPECIES		ENSOCUG00000014142 #12	PGM5 (ENSOCUG00000014125) #13	ENSOCUG00000010467	ENSOCUG00000000733 #14	DOCK8 (ENSOCUG00000003208) #17	KANK1 (ENSOCUG00000004753) #18	ENSOCUG00000036685	DMRT3 (ENSOCUG00000004582) #20	ENSOCUG00000027863	DMRT2 (ENSOCUG00000003299) #21	ENSOCUG00000037388	ENSOCUG00000034834	ENSOCUG00000023438	ENSOCUG00000035677	ENSOCUG00000000241	SMARCA2 (ENSOCUG00000006320) #22	ENSOCUG00000022775	VLDLR (ENSOCUG00000002231)	KCNV2 (ENSOCUG00000004385)	ENSOCUG00000004189	ENSOCUG00000039572	RFX3 (ENSOCUG00000014086)	ENSOCUG00000023393	ENSOCUG00000027590	GLIS3 (ENSOCUG00000023004)	ENSOCUG00000036407	ENSOCUG00000013264	ENSOCUG00000026987	ENSOCUG00000022202	PLPP6 (ENSOCUG00000003465)	SPATA6L (ENSOCUG00000003455)