Sarcopterygii	ANCESTRAL SPECIES	81													ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00390000017892	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Mammalia	ANCESTRAL SPECIES	24	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434
Theria	ANCESTRAL SPECIES	30	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Primates	ANCESTRAL SPECIES	9	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Gibbon	MODERN SPECIES	10	PIP5K1B (ENSNLEG00000008227) #7	PABIR1 (ENSNLEG00000034102) #8	ENSNLEG00000030468 #9	TMEM252 (ENSNLEG00000028670) #10	ENSNLEG00000008260 #11	ENSNLEG00000018739 #12	ENSNLEG00000008264 #13	ENSNLEG00000008270 #14	ENSNLEG00000028331 #15	DOCK8 (ENSNLEG00000008451) #16	KANK1 (ENSNLEG00000008510) #17	ENSNLEG00000018709 #18	DMRT1 (ENSNLEG00000008544) #19	DMRT3 (ENSNLEG00000008556) #20	DMRT2 (ENSNLEG00000008564) #21	SMARCA2 (ENSNLEG00000008575) #22	ENSNLEG00000029055 #23	ENSNLEG00000008695 #24	VLDLR (ENSNLEG00000008596) #25	KCNV2 (ENSNLEG00000008701) #26	PUM3 (ENSNLEG00000008712) #27	ENSNLEG00000029981 #28	RFX3 (ENSNLEG00000008785) #29	ENSNLEG00000028743 #30	ENSNLEG00000034817 #31	ENSNLEG00000035119 #32	SLC1A1 (ENSNLEG00000031411) #33	SPATA6L (ENSNLEG00000008860) #34	ENSNLEG00000028049 #35	CDC37L1 (ENSNLEG00000008879) #36	AK3 (ENSNLEG00000008885) #37
Hominidae	ANCESTRAL SPECIES	10	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353.a #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353.a.a.a #13	ENSGT00940000163353.a.a.b #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Homo/Pan group	ANCESTRAL SPECIES	27										ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Pan	ANCESTRAL SPECIES	26										ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Chimpanzee	MODERN SPECIES	22							ENSPTRG00000031407	ENSPTRG00000020994	ENSPTRG00000052275	DOCK8 (ENSPTRG00000020725) #16	ENSPTRG00000044534	KANK1 (ENSPTRG00000041819) #17	DMRT1 (ENSPTRG00000020728) #19	DMRT3 (ENSPTRG00000020729) #20	DMRT2 (ENSPTRG00000020730) #21	SMARCA2 (ENSPTRG00000051168) #22	ENSPTRG00000052144 #23	ENSPTRG00000047815 #24	VLDLR (ENSPTRG00000020732) #25	KCNV2 (ENSPTRG00000020734) #26	PUM3 (ENSPTRG00000020735) #27	ENSPTRG00000046907 #28	RFX3 (ENSPTRG00000048670) #29	ENSPTRG00000050873 #30	GLIS3 (ENSPTRG00000020738) #32	SLC1A1 (ENSPTRG00000020739) #33	SPATA6L (ENSPTRG00000020740) #34	PLPP6 (ENSPTRG00000044921) #35	CDC37L1 (ENSPTRG00000020741) #36	AK3 (ENSPTRG00000020742) #37	RCL1 (ENSPTRG00000020743)
Bonobo	MODERN SPECIES	22											ENSPPAG00000035014 #15	DOCK8 (ENSPPAG00000041152) #16	DMRT1 (ENSPPAG00000036830) #19	ENSPPAG00000027768 #20	DMRT2 (ENSPPAG00000033739) #21	SMARCA2 (ENSPPAG00000038717) #22	ENSPPAG00000042332 #23	ENSPPAG00000042393 #24	VLDLR (ENSPPAG00000029389) #25	KCNV2 (ENSPPAG00000040791) #26	PUM3 (ENSPPAG00000041337) #27	ENSPPAG00000029157 #28	RFX3 (ENSPPAG00000039978) #29	ENSPPAG00000011368 #30	GLIS3 (ENSPPAG00000043097) #32	SLC1A1 (ENSPPAG00000027502) #33	SPATA6L (ENSPPAG00000010175) #34	CDC37L1 (ENSPPAG00000038614) #36	AK3 (ENSPPAG00000033568) #37	RCL1 (ENSPPAG00000037958)	JAK2 (ENSPPAG00000019000)
Human	MODERN SPECIES	21								WASHC1 (ENSG00000181404)	FOXD4 (ENSG00000170122) #13	ZNG1A (ENSG00000172785)	DOCK8 (ENSG00000107099) #16	KANK1 (ENSG00000107104) #17	DMRT1 (ENSG00000137090) #19	DMRT3 (ENSG00000064218) #20	DMRT2 (ENSG00000173253) #21	SMARCA2 (ENSG00000080503) #22	VLDLR (ENSG00000147852) #25	KCNV2 (ENSG00000168263) #26	PUM3 (ENSG00000080608) #27	RFX3 (ENSG00000080298) #29	GLIS3 (ENSG00000107249) #32	SLC1A1 (ENSG00000106688) #33	SPATA6L (ENSG00000106686) #34	PLPP6 (ENSG00000205808) #35	CDC37L1 (ENSG00000106993) #36	AK3 (ENSG00000147853) #37	RCL1 (ENSG00000120158)	JAK2 (ENSG00000096968)	INSL6 (ENSG00000120210)	INSL4 (ENSG00000120211)	RLN2 (ENSG00000107014)
Gorilla	MODERN SPECIES	22	TJP2 (ENSGGOG00000010313)	FXN (ENSGGOG00000007636)	PIP5K1B (ENSGGOG00000013948) #7	PABIR1 (ENSGGOG00000034987) #8	TMEM252 (ENSGGOG00000015514) #10	ENSGGOG00000037092 #11	FOXD4 (ENSGGOG00000003673) #13	ENSGGOG00000022867 #14	ENSGGOG00000015757 #15	DOCK8 (ENSGGOG00000008791) #16	KANK1 (ENSGGOG00000005466) #17	DMRT1 (ENSGGOG00000013298) #19	DMRT3 (ENSGGOG00000013303) #20	DMRT2 (ENSGGOG00000025101) #21	ENSGGOG00000039224 #23	SMARCA2 (ENSGGOG00000000513) #22	ENSGGOG00000038609 #24	VLDLR (ENSGGOG00000001362) #25	KCNV2 (ENSGGOG00000000231) #26	PUM3 (ENSGGOG00000006143) #27	ENSGGOG00000022372 #28	RFX3 (ENSGGOG00000003805) #29	GLIS3 (ENSGGOG00000038970) #32	SLC1A1 (ENSGGOG00000000262) #33	PLPP6 (ENSGGOG00000040149) #35	SPATA6L (ENSGGOG00000034964) #34	CDC37L1 (ENSGGOG00000006889) #36	AK3 (ENSGGOG00000028122) #37	RCL1 (ENSGGOG00000015041)	ENSGGOG00000022573	JAK2 (ENSGGOG00000007243)
Orangutan	MODERN SPECIES	22	ENTREP1 (ENSPPYG00000019277)	TJP2 (ENSPPYG00000019275)	PRKACG (ENSPPYG00000019273)	ENSPPYG00000019272 #7	PABIR1 (ENSPPYG00000019271) #8	TMEM252 (ENSPPYG00000019269) #10	PGM5 (ENSPPYG00000019268) #11	ENSPPYG00000041038 #13	ZNG1A (ENSPPYG00000019265) #14	ENSPPYG00000030930 #15	DOCK8 (ENSPPYG00000019264) #16	KANK1 (ENSPPYG00000019262) #17	DMRT1 (ENSPPYG00000019261) #19	DMRT3 (ENSPPYG00000019260) #20	DMRT2 (ENSPPYG00000035747) #21	SMARCA2 (ENSPPYG00000019258) #22	ENSPPYG00000041078 #24	VLDLR (ENSPPYG00000019257) #25	KCNV2 (ENSPPYG00000019256) #26	PUM3 (ENSPPYG00000019255) #27	ENSPPYG00000019254 #28	RFX3 (ENSPPYG00000019253) #29	GLIS3 (ENSPPYG00000019250) #32	SLC1A1 (ENSPPYG00000019249) #33	PLPP6 (ENSPPYG00000019248) #35	SPATA6L (ENSPPYG00000019247) #34	CDC37L1 (ENSPPYG00000019246) #36	AK3 (ENSPPYG00000019245) #37	RCL1 (ENSPPYG00000019244)	JAK2 (ENSPPYG00000019243)	INSL6 (ENSPPYG00000019242)
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37
Rhinopithecus	ANCESTRAL SPECIES	227	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00390000010770.q.a	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23
Black snub-nosed monkey	MODERN SPECIES	90						TMEM252 (ENSRBIG00000012350) #10	PGM5 (ENSRBIG00000031935) #11	ENSRBIG00000042766 #14	ENSRBIG00000034943	ENSRBIG00000041692 #15	DOCK8 (ENSRBIG00000031277) #16	KANK1 (ENSRBIG00000030454) #17	DMRT1 (ENSRBIG00000040985) #19	DMRT3 (ENSRBIG00000030818) #20	DMRT2 (ENSRBIG00000038326) #21	SMARCA2 (ENSRBIG00000038618) #22	ENSRBIG00000039498	SLC24A3 (ENSRBIG00000026610)	RIN2 (ENSRBIG00000030048)	NAA20 (ENSRBIG00000037845)	CRNKL1 (ENSRBIG00000031770)	CFAP61 (ENSRBIG00000013830)	RALGAPA2 (ENSRBIG00000011325)	ENSRBIG00000044906	KIZ (ENSRBIG00000004023)	XRN2 (ENSRBIG00000036193)
Golden snub-nosed monkey	MODERN SPECIES	1156				ITGB1 (ENSRROG00000044827)	NRP1 (ENSRROG00000036541)	PGM5 (ENSRROG00000035630) #11	ENSRROG00000004214 #14	ENSRROG00000041612	ENSRROG00000031285 #15	DOCK8 (ENSRROG00000030555) #16	KANK1 (ENSRROG00000028581) #17	DMRT1 (ENSRROG00000035111) #19	DMRT3 (ENSRROG00000033393) #20	DMRT2 (ENSRROG00000028272) #21	ENSRROG00000034283 #23	SMARCA2 (ENSRROG00000019271) #22
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37
Vervet Monkey	MODERN SPECIES	3	TJP2 (ENSCSAG00000008451)	FXN (ENSCSAG00000008470)	PRKACG (ENSCSAG00000018499)	PIP5K1B (ENSCSAG00000008511) #7	PABIR1 (ENSCSAG00000018497) #8	TMEM252 (ENSCSAG00000008529) #10	PGM5 (ENSCSAG00000008540) #11	FOXD4L1 (ENSCSAG00000018495) #13	ENSCSAG00000008555 #14	ENSCSAG00000018493	DOCK8 (ENSCSAG00000008591) #16	KANK1 (ENSCSAG00000008611) #17	DMRT1 (ENSCSAG00000008623) #19	DMRT3 (ENSCSAG00000008627) #20	DMRT2 (ENSCSAG00000008632) #21	SMARCA2 (ENSCSAG00000008650) #22	ENSCSAG00000008657	VLDLR (ENSCSAG00000008671) #25	KCNV2 (ENSCSAG00000008677) #26	PUM3 (ENSCSAG00000008691) #27	RFX3 (ENSCSAG00000008704) #29	ENSCSAG00000008711 #32	SLC1A1 (ENSCSAG00000008723) #33	PLPP6 (ENSCSAG00000018491) #35	SPATA6L (ENSCSAG00000008768) #34	CDC37L1 (ENSCSAG00000008790) #36	AK3 (ENSCSAG00000008801) #37	RCL1 (ENSCSAG00000008811)	JAK2 (ENSCSAG00000008828)	INSL6 (ENSCSAG00000008855)	INSL4 (ENSCSAG00000008859)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00940000159989.h	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00940000159989.h	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00940000159989.h	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37
Drill	MODERN SPECIES	978																SMARCA2 (ENSMLEG00000027418) #22	ENSMLEG00000041221	ENSMLEG00000035182 #24	VLDLR (ENSMLEG00000032288) #25	KCNV2 (ENSMLEG00000032357) #26	PUM3 (ENSMLEG00000034820) #27	ENSMLEG00000041919 #28	RFX3 (ENSMLEG00000033860) #29	ENSMLEG00000038681	ENSMLEG00000000662 #30	GLIS3 (ENSMLEG00000040353) #32	SLC1A1 (ENSMLEG00000042172) #33	SPATA6L (ENSMLEG00000034746) #34	PLPP6 (ENSMLEG00000009133) #35	CDC37L1 (ENSMLEG00000014590) #36	AK3 (ENSMLEG00000032869) #37
Sooty mangabey	MODERN SPECIES	629	APBA1 (ENSCATG00000037394)	ENTREP1 (ENSCATG00000029249)	TJP2 (ENSCATG00000004548)	FXN (ENSCATG00000031607)	PIP5K1B (ENSCATG00000030684) #7	TMEM252 (ENSCATG00000030856) #10	PGM5 (ENSCATG00000040727) #11	FOXD4L1 (ENSCATG00000041044) #13	ENSCATG00000043151 #14	ENSCATG00000035578 #15	DOCK8 (ENSCATG00000037251) #16	KANK1 (ENSCATG00000042088) #17	DMRT1 (ENSCATG00000043860) #19	DMRT3 (ENSCATG00000043509) #20	DMRT2 (ENSCATG00000032878) #21	SMARCA2 (ENSCATG00000031470) #22	ENSCATG00000034215	ENSCATG00000014393 #24	VLDLR (ENSCATG00000033177) #25	KCNV2 (ENSCATG00000037552) #26	PUM3 (ENSCATG00000024880) #27	ENSCATG00000034924 #28	ENSCATG00000029808	RFX3 (ENSCATG00000034639) #29	ENSCATG00000030409 #30	GLIS3 (ENSCATG00000038488) #32	SLC1A1 (ENSCATG00000039114) #33	PLPP6 (ENSCATG00000022355) #35	SPATA6L (ENSCATG00000043815) #34	CDC37L1 (ENSCATG00000041223) #36	AK3 (ENSCATG00000044404) #37
Olive baboon	MODERN SPECIES	4	ENSPANG00000050497	TJP2 (ENSPANG00000025110)	FXN (ENSPANG00000025109)	PRKACG (ENSPANG00000041885)	PIP5K1B (ENSPANG00000025113) #7	ENSPANG00000042661	TMEM252 (ENSPANG00000025115) #10	PGM5 (ENSPANG00000025114) #11	FOXD4L1 (ENSPANG00000009332) #13	ENSPANG00000025116 #14	DOCK8 (ENSPANG00000025117) #16	KANK1 (ENSPANG00000025125) #17	DMRT1 (ENSPANG00000025124) #19	DMRT3 (ENSPANG00000025123) #20	DMRT2 (ENSPANG00000025122) #21	SMARCA2 (ENSPANG00000025121) #22	ENSPANG00000042712	VLDLR (ENSPANG00000025120) #25	KCNV2 (ENSPANG00000025119) #26	PUM3 (ENSPANG00000025118) #27	RFX3 (ENSPANG00000025143) #29	ENSPANG00000046940	GLIS3 (ENSPANG00000025157) #32	SLC1A1 (ENSPANG00000025156) #33	SPATA6L (ENSPANG00000025154) #34	CDC37L1 (ENSPANG00000025153) #36	AK3 (ENSPANG00000025152) #37	RCL1 (ENSPANG00000025151)	JAK2 (ENSPANG00000025145)	ENSPANG00000041678	INSL6 (ENSPANG00000025144)
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.w.a	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00940000154318.B.i.b	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.cb #28	ENSGT01050000244879.a.a.b #29	ENSGT00940000159989.h	ENSGT00910000146957 #30	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36
Pig-tailed macaque	MODERN SPECIES	182	ENTREP1 (ENSMNEG00000040043)	TJP2 (ENSMNEG00000036109)	FXN (ENSMNEG00000034453)	PIP5K1B (ENSMNEG00000011196) #7	TMEM252 (ENSMNEG00000034076) #10	PGM5 (ENSMNEG00000042872) #11	FOXD4L1 (ENSMNEG00000037878) #13	ENSMNEG00000034389 #14	ENSMNEG00000005621	ENSMNEG00000040201 #15	DOCK8 (ENSMNEG00000042769) #16	KANK1 (ENSMNEG00000029060) #17	DMRT1 (ENSMNEG00000036006) #19	DMRT3 (ENSMNEG00000035240) #20	DMRT2 (ENSMNEG00000033851) #21	SMARCA2 (ENSMNEG00000041069) #22	ENSMNEG00000028744	ENSMNEG00000040152	ENSMNEG00000044919 #24	VLDLR (ENSMNEG00000040863) #25	KCNV2 (ENSMNEG00000012723) #26	PUM3 (ENSMNEG00000035288) #27	ENSMNEG00000032248 #28	RFX3 (ENSMNEG00000038188) #29	ENSMNEG00000042708	ENSMNEG00000040313 #30	GLIS3 (ENSMNEG00000032738) #32	SLC1A1 (ENSMNEG00000029913) #33	SPATA6L (ENSMNEG00000044422) #34	PLPP6 (ENSMNEG00000001828) #35	CDC37L1 (ENSMNEG00000030663) #36
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000005811.w.a	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.b.b.a.a.a.a.a	ENSGT00940000165129	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00390000010770.r	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT01100000264112.b.a	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.b
Rhesus	MODERN SPECIES	6	PRKACG (ENSMMUG00000020379)	PIP5K1B (ENSMMUG00000012472) #7	TMEM252 (ENSMMUG00000056154) #10	PGM5 (ENSMMUG00000008230) #11	FOXD4L1 (ENSMMUG00000023182) #13	ZNG1A (ENSMMUG00000016193) #14	ENSMMUG00000050562	ENSMMUG00000058086 #15	DOCK8 (ENSMMUG00000016976) #16	ENSMMUG00000064601	KANK1 (ENSMMUG00000019862) #17	ENSMMUG00000061012	DMRT3 (ENSMMUG00000044083) #20	DMRT2 (ENSMMUG00000014844) #21	ENSMMUG00000051059	SMARCA2 (ENSMMUG00000015279) #22	VLDLR (ENSMMUG00000015093) #25	KCNV2 (ENSMMUG00000060949) #26	PUM3 (ENSMMUG00000002362) #27	RFX3 (ENSMMUG00000000802) #29	GLIS3 (ENSMMUG00000057568) #32	SLC1A1 (ENSMMUG00000000135) #33	PLPP6 (ENSMMUG00000059411) #35	SPATA6L (ENSMMUG00000000136) #34	CDC37L1 (ENSMMUG00000000141) #36	AK3 (ENSMMUG00000000143) #37	RCL1 (ENSMMUG00000057331)	JAK2 (ENSMMUG00000014558)	INSL6 (ENSMMUG00000065127)	INSL4 (ENSMMUG00000058221)	RLN2 (ENSMMUG00000047971)
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000053935	ENSMFAG00000063759	PRKACG (ENSMFAG00000030376)	PIP5K1B (ENSMFAG00000038711) #7	TMEM252 (ENSMFAG00000062896) #10	PGM5 (ENSMFAG00000045131) #11	ENSMFAG00000044635 #14	ENSMFAG00000051139	ENSMFAG00000045857 #15	DOCK8 (ENSMFAG00000008069) #16	ENSMFAG00000047680	KANK1 (ENSMFAG00000036947) #17	ENSMFAG00000060255	DMRT3 (ENSMFAG00000045391) #20	DMRT2 (ENSMFAG00000040812) #21	ENSMFAG00000058821 #22	ENSMFAG00000056188 #23	ENSMFAG00000003814 #22	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374) #25	KCNV2 (ENSMFAG00000055892) #26	PUM3 (ENSMFAG00000001430) #27	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237) #29	ENSMFAG00000049557	ENSMFAG00000030908 #32	SLC1A1 (ENSMFAG00000038163) #33	SPATA6L (ENSMFAG00000032285) #34	CDC37L1 (ENSMFAG00000000879) #36	AK3 (ENSMFAG00000041698) #37	ENSMFAG00000049440
Crab-eating macaque	MODERN SPECIES	6	PRKACG (ENSMFAG00000030376)	PIP5K1B (ENSMFAG00000038711) #7	TMEM252 (ENSMFAG00000062896) #10	PGM5 (ENSMFAG00000045131) #11	ENSMFAG00000044635 #14	ENSMFAG00000051139	ENSMFAG00000045857 #15	DOCK8 (ENSMFAG00000008069) #16	ENSMFAG00000047680	KANK1 (ENSMFAG00000036947) #17	ENSMFAG00000060255	DMRT3 (ENSMFAG00000045391) #20	DMRT2 (ENSMFAG00000040812) #21	ENSMFAG00000058821 #22	ENSMFAG00000056188 #23	ENSMFAG00000003814 #22	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374) #25	KCNV2 (ENSMFAG00000055892) #26	PUM3 (ENSMFAG00000001430) #27	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237) #29	ENSMFAG00000049557	ENSMFAG00000030908 #32	SLC1A1 (ENSMFAG00000038163) #33	SPATA6L (ENSMFAG00000032285) #34	CDC37L1 (ENSMFAG00000000879) #36	AK3 (ENSMFAG00000041698) #37	ENSMFAG00000049440	RCL1 (ENSMFAG00000037906)	JAK2 (ENSMFAG00000003627)
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523.r #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523.r #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cebidae_a	ANCESTRAL SPECIES	92	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811.w.a	ENSGT00940000158634	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523.r #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00910000146995 #23	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00390000004049.ab #28	ENSGT00530000063402.a.h	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a
Capuchin	MODERN SPECIES	227																SMARCA2 (ENSCCAG00000030636) #22	ENSCCAG00000032291 #23	ENSCCAG00000024458 #24	VLDLR (ENSCCAG00000034631) #25	KCNV2 (ENSCCAG00000006608) #26	PUM3 (ENSCCAG00000032650) #27	ENSCCAG00000023250 #28	ENSCCAG00000034048	ENSCCAG00000032475	RFX3 (ENSCCAG00000030352) #29	GLIS3 (ENSCCAG00000025272) #32	SLC1A1 (ENSCCAG00000024828) #33	SPATA6L (ENSCCAG00000019855) #34	PLPP6 (ENSCCAG00000017149) #35	CDC37L1 (ENSCCAG00000036002) #36	AK3 (ENSCCAG00000024553) #37
Bolivian squirrel monkey	MODERN SPECIES	118	ENTREP1 (ENSSBOG00000021064)	FXN (ENSSBOG00000022179)	TJP2 (ENSSBOG00000035815)	PIP5K1B (ENSSBOG00000027534) #7	TMEM252 (ENSSBOG00000022996) #10	PGM5 (ENSSBOG00000030297) #11	ENSSBOG00000020533 #13	ENSSBOG00000031336 #14	ENSSBOG00000032210 #15	DOCK8 (ENSSBOG00000020599) #16	KANK1 (ENSSBOG00000032525) #17	DMRT1 (ENSSBOG00000027694) #19	DMRT3 (ENSSBOG00000027585) #20	DMRT2 (ENSSBOG00000010665) #21	ENSSBOG00000019886	SMARCA2 (ENSSBOG00000034827) #22	ENSSBOG00000020747 #23	VLDLR (ENSSBOG00000031091) #25	KCNV2 (ENSSBOG00000023504) #26	PUM3 (ENSSBOG00000028066) #27	ENSSBOG00000022458 #28	ENSSBOG00000026932	ENSSBOG00000016907	RFX3 (ENSSBOG00000031103) #29	GLIS3 (ENSSBOG00000032997) #32	ENSSBOG00000019687	SLC1A1 (ENSSBOG00000032684) #33	SPATA6L (ENSSBOG00000026985) #34	ENSSBOG00000022998	PLPP6 (ENSSBOG00000019035) #35	CDC37L1 (ENSSBOG00000032737) #36
Marmoset	MODERN SPECIES		ENSCJAG00000054232	ENSCJAG00000032275 #14	ENSCJAG00000003147	ENSCJAG00000074827	ENSCJAG00000085396	ENSCJAG00000073324	ENSCJAG00000040149 #13	ENSCJAG00000010423 #14	ENSCJAG00000054365	ENSCJAG00000078334	DOCK8 (ENSCJAG00000010485) #16	KANK1 (ENSCJAG00000010595) #17	ENSCJAG00000084547	DMRT3 (ENSCJAG00000063670) #20	DMRT2 (ENSCJAG00000010690) #21	SMARCA2 (ENSCJAG00000010710) #22	ENSCJAG00000042690 #24	VLDLR (ENSCJAG00000010772) #25	KCNV2 (ENSCJAG00000042809) #26	PUM3 (ENSCJAG00000010917) #27	RFX3 (ENSCJAG00000010996) #29	GLIS3 (ENSCJAG00000011083) #32	ENSCJAG00000073768	SLC1A1 (ENSCJAG00000011113) #33	SPATA6L (ENSCJAG00000011136) #34	PLPP6 (ENSCJAG00000063898) #35	AK3 (ENSCJAG00000011188) #37	CDC37L1 (ENSCJAG00000011155) #36	ENSCJAG00000059464	RCL1 (ENSCJAG00000011202)	JAK2 (ENSCJAG00000011228)
Mas night monkey	MODERN SPECIES	599												DMRT1 (ENSANAG00000030765) #19	DMRT3 (ENSANAG00000027840) #20	DMRT2 (ENSANAG00000020591) #21	ENSANAG00000018592 #23	SMARCA2 (ENSANAG00000026498) #22	ENSANAG00000029407 #24	VLDLR (ENSANAG00000020851) #25	KCNV2 (ENSANAG00000035114) #26	PUM3 (ENSANAG00000024520) #27	ENSANAG00000036903	RFX3 (ENSANAG00000038145) #29	GLIS3 (ENSANAG00000038022) #32	SLC1A1 (ENSANAG00000032125) #33	PLPP6 (ENSANAG00000019076) #35	SPATA6L (ENSANAG00000030395) #34	ENSANAG00000029767	CDC37L1 (ENSANAG00000028426) #36	AK3 (ENSANAG00000037726) #37	RCL1 (ENSANAG00000037372)	JAK2 (ENSANAG00000027034)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5009												CUNH11orf74 (ENSTSYG00000011833)	TRAF6 (ENSTSYG00000028225)	PRR5L (ENSTSYG00000031790)	ENSTSYG00000006704	SMARCA2 (ENSTSYG00000003858) #22
Tarsier	MODERN SPECIES	6262																ENSTSYG00000036848 #22
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896.q #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896.q #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523.s #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896.q #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.a
Greater bamboo lemur	MODERN SPECIES	152	ENTREP1 (ENSPSMG00000025763)	TJP2 (ENSPSMG00000025742)	FXN (ENSPSMG00000025681)	PIP5K1B (ENSPSMG00000025678) #7	PABIR1 (ENSPSMG00000025658) #8	TMEM252 (ENSPSMG00000025655) #10	PGM5 (ENSPSMG00000025652) #11	ENSPSMG00000025644 #13	ENSPSMG00000025574 #14	DOCK8 (ENSPSMG00000025332) #16	KANK1 (ENSPSMG00000025243) #17	DMRT1 (ENSPSMG00000025222) #19	DMRT3 (ENSPSMG00000025210) #20	DMRT2 (ENSPSMG00000025206) #21	ENSPSMG00000025195	SMARCA2 (ENSPSMG00000025173) #22	ENSPSMG00000025075 #24	VLDLR (ENSPSMG00000025041) #25	KCNV2 (ENSPSMG00000024960) #26	ENSPSMG00000024956 #27	ENSPSMG00000024950	RFX3 (ENSPSMG00000024938) #29	GLIS3 (ENSPSMG00000024897) #32	SLC1A1 (ENSPSMG00000024890) #33	PLPP6 (ENSPSMG00000024881) #35	SPATA6L (ENSPSMG00000024878) #34	CDC37L1 (ENSPSMG00000024864) #36	AK3 (ENSPSMG00000024859) #37	RCL1 (ENSPSMG00000024848)	JAK2 (ENSPSMG00000024838)	ENSPSMG00000024795
Coquerels sifaka	MODERN SPECIES	549																SMARCA2 (ENSPCOG00000025709) #22	ENSPCOG00000026110	ENSPCOG00000019796 #24	VLDLR (ENSPCOG00000026506) #25	KCNV2 (ENSPCOG00000023607) #26	PUM3 (ENSPCOG00000027325) #27	RFX3 (ENSPCOG00000022172) #29	GLIS3 (ENSPCOG00000022619) #32	SLC1A1 (ENSPCOG00000013653) #33	SPATA6L (ENSPCOG00000001879) #34	PLPP6 (ENSPCOG00000013586) #35	CDC37L1 (ENSPCOG00000025983) #36	ENSPCOG00000024436 #37	RCL1 (ENSPCOG00000009611)
Mouse lemur	MODERN SPECIES	1	APBA1 (ENSMICG00000009602)	ENTREP1 (ENSMICG00000002917)	TJP2 (ENSMICG00000002908)	FXN (ENSMICG00000044611)	PIP5K1B (ENSMICG00000004323) #7	TMEM252 (ENSMICG00000044472) #10	PGM5 (ENSMICG00000015998) #11	ENSMICG00000036465 #13	ENSMICG00000005330	ENSMICG00000031232	DOCK8 (ENSMICG00000008267) #16	KANK1 (ENSMICG00000010410) #17	DMRT1 (ENSMICG00000010417) #19	DMRT3 (ENSMICG00000044854) #20	DMRT2 (ENSMICG00000010426) #21	SMARCA2 (ENSMICG00000005162) #22	ENSMICG00000005190 #24	VLDLR (ENSMICG00000005182) #25	KCNV2 (ENSMICG00000005193) #26	PUM3 (ENSMICG00000045916) #27	ENSMICG00000029542	RFX3 (ENSMICG00000011871) #29	ENSMICG00000041775 #32	ENSMICG00000031277 #32	SLC1A1 (ENSMICG00000005171) #33	SPATA6L (ENSMICG00000017688) #34	CDC37L1 (ENSMICG00000017690) #36	ENSMICG00000013112 #37	RCL1 (ENSMICG00000015562)	JAK2 (ENSMICG00000003885)	INSL6 (ENSMICG00000044551)
Bushbaby	MODERN SPECIES	121	TJP2 (ENSOGAG00000014757)	ENSOGAG00000031105	PIP5K1B (ENSOGAG00000009431) #7	PABIR1 (ENSOGAG00000024522) #8	TMEM252 (ENSOGAG00000015132) #10	PGM5 (ENSOGAG00000015121) #11	ENSOGAG00000029277 #13	ENSOGAG00000002011 #14	DOCK8 (ENSOGAG00000004639) #16	ENSOGAG00000031226	KANK1 (ENSOGAG00000001985) #17	DMRT1 (ENSOGAG00000001989) #19	DMRT3 (ENSOGAG00000026565) #20	DMRT2 (ENSOGAG00000001994) #21	ENSOGAG00000025218	SMARCA2 (ENSOGAG00000017053) #22	VLDLR (ENSOGAG00000013312) #25	KCNV2 (ENSOGAG00000030433) #26	ENSOGAG00000008125 #27	RFX3 (ENSOGAG00000007762) #29	GLIS3 (ENSOGAG00000007376) #32	SLC1A1 (ENSOGAG00000007464) #33	PLPP6 (ENSOGAG00000007472) #35	SPATA6L (ENSOGAG00000007468) #34	CDC37L1 (ENSOGAG00000007475) #36	AK3 (ENSOGAG00000007477) #37	RCL1 (ENSOGAG00000007480)	JAK2 (ENSOGAG00000012246)	ENSOGAG00000009500	PLGRKT (ENSOGAG00000003280)	CD274 (ENSOGAG00000003282)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Tree shrew	MODERN SPECIES	5134															ENSTBEG00000008665	SMARCA2 (ENSTBEG00000008767) #22
Glires	ANCESTRAL SPECIES	9	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Kangaroo rat	MODERN SPECIES	359	Mamdc2 (ENSDORG00000000884)	Ptar1 (ENSDORG00000005855)	Apba1 (ENSDORG00000003149)	Entrep1 (ENSDORG00000001566)	Tjp2 (ENSDORG00000009039)	Fxn (ENSDORG00000027975)	Pip5k1b (ENSDORG00000001153) #7	Fam122a (ENSDORG00000001152) #8	Tmem252 (ENSDORG00000005477) #10	Pgm5 (ENSDORG00000005476) #11	Cbwd1 (ENSDORG00000004917) #14	Dock8 (ENSDORG00000007203) #16	Kank1 (ENSDORG00000015159) #17	ENSDORG00000006363 #19	Dmrt2 (ENSDORG00000007216) #21	Smarca2 (ENSDORG00000014832) #22	Vldlr (ENSDORG00000012954) #25	Kcnv2 (ENSDORG00000011511) #26	ENSDORG00000003628 #27	Rfx3 (ENSDORG00000013906) #29	ENSDORG00000025494 #32	Slc1a1 (ENSDORG00000010091) #33	Plpp6 (ENSDORG00000003071) #35	Cdc37l1 (ENSDORG00000023648) #36	Ak3 (ENSDORG00000010355) #37	Rcl1 (ENSDORG00000015645)	Jak2 (ENSDORG00000011552)	ENSDORG00000000109	ENSDORG00000028062 #18
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Lesser Egyptian jerboa	MODERN SPECIES	50	Tjp2 (ENSJJAG00000003581)	Fxn (ENSJJAG00000022666)	Pip5k1b (ENSJJAG00000018154) #7	Fam122a (ENSJJAG00000009421) #8	Tmem252 (ENSJJAG00000015659) #10	Pgm5 (ENSJJAG00000022690) #11	ENSJJAG00000013817 #14	ENSJJAG00000009646 #16	ENSJJAG00000017231 #16	ENSJJAG00000015498 #16	Kank1 (ENSJJAG00000018774) #17	Dmrt1 (ENSJJAG00000016690) #19	Dmrt3 (ENSJJAG00000022573) #20	Dmrt2 (ENSJJAG00000023959) #21	ENSJJAG00000010719	Smarca2 (ENSJJAG00000010867) #22	Vldlr (ENSJJAG00000016440) #25	ENSJJAG00000000409 #24	Kcnv2 (ENSJJAG00000016782) #26	Pum3 (ENSJJAG00000012563) #27	ENSJJAG00000010263	Rfx3 (ENSJJAG00000010280) #29	ENSJJAG00000024335	Glis3 (ENSJJAG00000011399) #32	Slc1a1 (ENSJJAG00000018507) #33	ENSJJAG00000020462	Spata6l (ENSJJAG00000022941) #34	Plpp6 (ENSJJAG00000011277) #35	Cdc37l1 (ENSJJAG00000024330) #36	Ak3 (ENSJJAG00000023388) #37	ENSJJAG00000022803
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166												Dmrt1 (ENSNGAG00000001295) #19	Dmrt3 (ENSNGAG00000020423) #20	Dmrt2 (ENSNGAG00000020041) #21	ENSNGAG00000013866	Smarca2 (ENSNGAG00000000108) #22	ENSNGAG00000012912	Vldlr (ENSNGAG00000003966) #25	Kcnv2 (ENSNGAG00000020439) #26	Pum3 (ENSNGAG00000019468) #27	Rfx3 (ENSNGAG00000016470) #29	Glis3 (ENSNGAG00000006111) #32	ENSNGAG00000018137	Slc1a1 (ENSNGAG00000014723) #33	Plpp6 (ENSNGAG00000014756) #35	Spata6l (ENSNGAG00000017948) #34	Cdc37l1 (ENSNGAG00000018155) #36	Ak3 (ENSNGAG00000016647) #37	Rcl1 (ENSNGAG00000015327)	Jak2 (ENSNGAG00000000096)
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Murinae	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Mus	ANCESTRAL SPECIES		ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460 #25	ENSGT00520000061590 #24	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460 #25	ENSGT00520000061590 #24	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460 #25	ENSGT00520000061590 #24	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00900000143396	ENSGT00940000155460 #25	ENSGT00520000061590 #24	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Steppe mouse	MODERN SPECIES	3106																Smarca2 (ENSMSIG00000022131) #22	Gm815 (ENSMSIG00000023064)	Vldlr (ENSMSIG00000023084) #25	ENSMSIG00000023160 #24	Kcnv2 (ENSMSIG00000023184) #26	Pum3 (ENSMSIG00000023194) #27	Rfx3 (ENSMSIG00000023245) #29	ENSMSIG00000023373	Glis3 (ENSMSIG00000023382) #32
spretus	MODERN SPECIES	10	MGP_SPRETEiJ_G0023744	Apba1 (MGP_SPRETEiJ_G0023745)	Entrep1 (MGP_SPRETEiJ_G0023746)	Tjp2 (MGP_SPRETEiJ_G0023747)	Fxn (MGP_SPRETEiJ_G0023748)	Pip5k1b (MGP_SPRETEiJ_G0023749) #7	Fam122a (MGP_SPRETEiJ_G0023750) #8	Tmem252 (MGP_SPRETEiJ_G0023751) #10	Pgm5 (MGP_SPRETEiJ_G0023752) #11	Foxd4 (MGP_SPRETEiJ_G0023753) #13	Cbwd1 (MGP_SPRETEiJ_G0023754) #14	Dock8 (MGP_SPRETEiJ_G0023755) #16	Kank1 (MGP_SPRETEiJ_G0023756) #17	Dmrt3 (MGP_SPRETEiJ_G0023757) #20	Dmrt2 (MGP_SPRETEiJ_G0023758) #21	Smarca2 (MGP_SPRETEiJ_G0023759) #22	MGP_SPRETEiJ_G0023760	Vldlr (MGP_SPRETEiJ_G0023761) #25	Kcnv2 (MGP_SPRETEiJ_G0023762) #26	Pum3 (MGP_SPRETEiJ_G0023763) #27	Rfx3 (MGP_SPRETEiJ_G0023764) #29	Glis3 (MGP_SPRETEiJ_G0023765) #32	Slc1a1 (MGP_SPRETEiJ_G0023766) #33	Spata6l (MGP_SPRETEiJ_G0023767) #34	Plpp6 (MGP_SPRETEiJ_G0023768) #35	Cdc37l1 (MGP_SPRETEiJ_G0023769) #36	Ak3 (MGP_SPRETEiJ_G0023770) #37	Rcl1 (MGP_SPRETEiJ_G0023771)	Jak2 (MGP_SPRETEiJ_G0023772)	Insl6 (MGP_SPRETEiJ_G0023773)	Rln1 (MGP_SPRETEiJ_G0023774)
Mouse	MODERN SPECIES	10	Entrep1 (ENSMUSG00000071604)	Tjp2 (ENSMUSG00000024812)	Fxn (ENSMUSG00000059363)	Pip5k1b (ENSMUSG00000024867) #7	Fam122a (ENSMUSG00000074922) #8	Tmem252 (ENSMUSG00000048572) #10	Pgm5 (ENSMUSG00000041731) #11	Gm10053 (ENSMUSG00000058927)	Foxd4 (ENSMUSG00000051490) #13	Cbwd1 (ENSMUSG00000024878) #14	Dock8 (ENSMUSG00000052085) #16	Kank1 (ENSMUSG00000032702) #17	Dmrt1 (ENSMUSG00000024837) #19	Dmrt3 (ENSMUSG00000042372) #20	Dmrt2 (ENSMUSG00000048138) #21	Smarca2 (ENSMUSG00000024921) #22	Gm815 (ENSMUSG00000074913)	Vldlr (ENSMUSG00000024924) #25	Kcnv2 (ENSMUSG00000047298) #26	Pum3 (ENSMUSG00000041360) #27	Rfx3 (ENSMUSG00000040929) #29	Glis3 (ENSMUSG00000052942) #32	Slc1a1 (ENSMUSG00000024935) #33	Spata6l (ENSMUSG00000064202) #34	Plpp6 (ENSMUSG00000040105) #35	Cdc37l1 (ENSMUSG00000024780) #36	Ak3 (ENSMUSG00000024782) #37	Rcl1 (ENSMUSG00000024785)	Jak2 (ENSMUSG00000024789)	Insl6 (ENSMUSG00000050957)	Rln1 (ENSMUSG00000039097)
Ryukyu mouse	MODERN SPECIES	10	Apba1 (MGP_CAROLIEiJ_G0022826)	Entrep1 (MGP_CAROLIEiJ_G0022827)	Tjp2 (MGP_CAROLIEiJ_G0022828)	Fxn (MGP_CAROLIEiJ_G0022829)	Pip5k1b (MGP_CAROLIEiJ_G0022830) #7	Fam122a (MGP_CAROLIEiJ_G0022831) #8	Tmem252 (MGP_CAROLIEiJ_G0022832) #10	Pgm5 (MGP_CAROLIEiJ_G0022833) #11	Foxd4 (MGP_CAROLIEiJ_G0022834) #13	Cbwd1 (MGP_CAROLIEiJ_G0022835) #14	Dock8 (MGP_CAROLIEiJ_G0022836) #16	Kank1 (MGP_CAROLIEiJ_G0022837) #17	Dmrt1 (MGP_CAROLIEiJ_G0022838) #19	Dmrt3 (MGP_CAROLIEiJ_G0022839) #20	Dmrt2 (MGP_CAROLIEiJ_G0022840) #21	Smarca2 (MGP_CAROLIEiJ_G0022841) #22	MGP_CAROLIEiJ_G0022842	Vldlr (MGP_CAROLIEiJ_G0022843) #25	Kcnv2 (MGP_CAROLIEiJ_G0022844) #26	Pum3 (MGP_CAROLIEiJ_G0022845) #27	Rfx3 (MGP_CAROLIEiJ_G0022846) #29	Glis3 (MGP_CAROLIEiJ_G0022847) #32	Slc1a1 (MGP_CAROLIEiJ_G0022848) #33	Spata6l (MGP_CAROLIEiJ_G0022849) #34	Plpp6 (MGP_CAROLIEiJ_G0022850) #35	Cdc37l1 (MGP_CAROLIEiJ_G0022851) #36	Ak3 (MGP_CAROLIEiJ_G0022852) #37	Rcl1 (MGP_CAROLIEiJ_G0022853)	Jak2 (MGP_CAROLIEiJ_G0022854)	Insl6 (MGP_CAROLIEiJ_G0022855)	Rln1 (MGP_CAROLIEiJ_G0022856)
Shrew mouse	MODERN SPECIES		Ptar1 (MGP_PahariEiJ_G0014318)	Apba1 (MGP_PahariEiJ_G0014319)	Entrep1 (MGP_PahariEiJ_G0014320)	Tjp2 (MGP_PahariEiJ_G0014321)	MGP_PahariEiJ_G0014322	Fam122a (MGP_PahariEiJ_G0014324) #8	Tmem252 (MGP_PahariEiJ_G0014325) #10	Pgm5 (MGP_PahariEiJ_G0014326) #11	Foxd4 (MGP_PahariEiJ_G0014327) #13	Cbwd1 (MGP_PahariEiJ_G0014328) #14	Dock8 (MGP_PahariEiJ_G0014329) #16	Kank1 (MGP_PahariEiJ_G0014330) #17	Dmrt1 (MGP_PahariEiJ_G0014331) #19	Dmrt3 (MGP_PahariEiJ_G0014332) #20	Dmrt2 (MGP_PahariEiJ_G0014333) #21	Smarca2 (MGP_PahariEiJ_G0014334) #22	MGP_PahariEiJ_G0014335	Vldlr (MGP_PahariEiJ_G0014336) #25	Kcnv2 (MGP_PahariEiJ_G0014337) #26	Pum3 (MGP_PahariEiJ_G0014338) #27	Rfx3 (MGP_PahariEiJ_G0014339) #29	Glis3 (MGP_PahariEiJ_G0014340) #32	Slc1a1 (MGP_PahariEiJ_G0014341) #33	Spata6l (MGP_PahariEiJ_G0014342) #34	Plpp6 (MGP_PahariEiJ_G0014343) #35	Cdc37l1 (MGP_PahariEiJ_G0014344) #36	Ak3 (MGP_PahariEiJ_G0014345) #37	Rcl1 (MGP_PahariEiJ_G0014346)	Jak2 (MGP_PahariEiJ_G0014347)	Insl6 (MGP_PahariEiJ_G0014348)	Rln1 (MGP_PahariEiJ_G0014349)
Rat	MODERN SPECIES		Tjp2 (ENSRNOG00000015030)	Fxn (ENSRNOG00000015213)	Pip5k1b (ENSRNOG00000015232) #7	Pabir1 (ENSRNOG00000051051) #8	Tmem252 (ENSRNOG00000025476) #10	Pgm5 (ENSRNOG00000015406) #11	Foxd4 (ENSRNOG00000050486) #13	Zng1a (ENSRNOG00000015516) #14	Dock8 (ENSRNOG00000015894) #16	Hmgb1-ps4 (ENSRNOG00000065098)	Kank1 (ENSRNOG00000016023) #17	Dmrt1 (ENSRNOG00000016075) #19	Dmrt3 (ENSRNOG00000016284) #20	Dmrt2 (ENSRNOG00000016301) #21	ENSRNOG00000062555	Smarca2 (ENSRNOG00000011931) #22	ENSRNOG00000069446 #24	Vldlr (ENSRNOG00000027491) #25	ENSRNOG00000062591	Kcnv2 (ENSRNOG00000012566) #26	Pum3 (ENSRNOG00000012574) #27	Rfx3 (ENSRNOG00000014486) #29	ENSRNOG00000066761	Glis3 (ENSRNOG00000014768) #32	Slc1a1 (ENSRNOG00000014816) #33	ENSRNOG00000065811	Spata6l (ENSRNOG00000015137) #34	Plpp6 (ENSRNOG00000015268) #35	RGD1565057 (ENSRNOG00000069618)	Cdc37l1 (ENSRNOG00000010967) #36	Ak3 (ENSRNOG00000052506) #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000017892	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Northern American deer mouse	MODERN SPECIES		Ptar1 (ENSPEMG00000018036)	Apba1 (ENSPEMG00000010980)	Entrep1 (ENSPEMG00000020060)	Tjp2 (ENSPEMG00000020250)	ENSPEMG00000019884	Pip5k1b (ENSPEMG00000020095) #7	Fam122a (ENSPEMG00000012823) #8	Tmem252 (ENSPEMG00000007137) #10	Pgm5 (ENSPEMG00000020205) #11	Cbwd1 (ENSPEMG00000000396) #14	Dock8 (ENSPEMG00000014001) #16	Kank1 (ENSPEMG00000013916) #17	Dmrt1 (ENSPEMG00000019943) #19	Dmrt3 (ENSPEMG00000019990) #20	Dmrt2 (ENSPEMG00000019767) #21	Smarca2 (ENSPEMG00000019821) #22	ENSPEMG00000021666 #24	Vldlr (ENSPEMG00000022250) #25	Kcnv2 (ENSPEMG00000020138) #26	ENSPEMG00000030423	ENSPEMG00000019340 #27	Rfx3 (ENSPEMG00000019731) #29	Glis3 (ENSPEMG00000020002) #32	ENSPEMG00000004286	Slc1a1 (ENSPEMG00000009611) #33	ENSPEMG00000021571	Spata6l (ENSPEMG00000023122) #34	Plpp6 (ENSPEMG00000007181) #35	Cdc37l1 (ENSPEMG00000000344) #36	Ak3 (ENSPEMG00000022781) #37	Rcl1 (ENSPEMG00000023275)
Prairie vole	MODERN SPECIES	16	Apba1 (ENSMOCG00000009892)	Entrep1 (ENSMOCG00000018310)	Tjp2 (ENSMOCG00000012468)	Fxn (ENSMOCG00000014625)	Pip5k1b (ENSMOCG00000017594) #7	ENSMOCG00000010285	Fam122a (ENSMOCG00000001051) #8	Tmem252 (ENSMOCG00000017938) #10	Pgm5 (ENSMOCG00000011710) #11	Cbwd1 (ENSMOCG00000015974) #14	Dock8 (ENSMOCG00000014249) #16	Kank1 (ENSMOCG00000020725) #17	ENSMOCG00000017971 #19	Dmrt3 (ENSMOCG00000015270) #20	Dmrt2 (ENSMOCG00000016701) #21	Smarca2 (ENSMOCG00000001611) #22	Vldlr (ENSMOCG00000004269) #25	Kcnv2 (ENSMOCG00000014872) #26	ENSMOCG00000019519 #27	Rfx3 (ENSMOCG00000018931) #29	Glis3 (ENSMOCG00000009953) #32	Slc1a1 (ENSMOCG00000017507) #33	ENSMOCG00000018225	Spata6l (ENSMOCG00000022082) #34	Plpp6 (ENSMOCG00000001135) #35	Cdc37l1 (ENSMOCG00000018341) #36	Ak3 (ENSMOCG00000010856) #37	Rcl1 (ENSMOCG00000012145)	Jak2 (ENSMOCG00000013580)	Insl6 (ENSMOCG00000015208)	Rln1 (ENSMOCG00000012108)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Chinese hamster chok1gshd	MODERN SPECIES	401	Entrep1 (ENSCGRG00001002309)	Tjp2 (ENSCGRG00001022408)	Fxn (ENSCGRG00001003906)	ENSCGRG00001013409	Pip5k1b (ENSCGRG00001017408) #7	Fam122a (ENSCGRG00001012685) #8	Tmem252 (ENSCGRG00001019081) #10	Pgm5 (ENSCGRG00001020037) #11	Foxd4 (ENSCGRG00001006276) #13	Cbwd1 (ENSCGRG00001020851) #14	Dock8 (ENSCGRG00001013079) #16	Kank1 (ENSCGRG00001020355) #17	Dmrt1 (ENSCGRG00001000625) #19	Dmrt3 (ENSCGRG00001005036) #20	Dmrt2 (ENSCGRG00001007562) #21	Smarca2 (ENSCGRG00001002323) #22	Vldlr (ENSCGRG00001014399) #25	ENSCGRG00001017895 #24	Kcnv2 (ENSCGRG00001018140) #26	Pum3 (ENSCGRG00001016402) #27	Rfx3 (ENSCGRG00001021745) #29	Glis3 (ENSCGRG00001014233) #32	Slc1a1 (ENSCGRG00001022336) #33	ENSCGRG00001023585	Spata6l (ENSCGRG00001002881) #34	Plpp6 (ENSCGRG00001012981) #35	Cdc37l1 (ENSCGRG00001000264) #36	AK3 (ENSCGRG00001007296) #37	Rcl1 (ENSCGRG00001013748)	Jak2 (ENSCGRG00001015840)	Insl6 (ENSCGRG00001020673)
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	617	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912) #7	Fam122a (ENSMAUG00000002386) #8	Tmem252 (ENSMAUG00000008962) #10	Pgm5 (ENSMAUG00000009185) #11	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #16	ENSMAUG00000009191 #16	Kank1 (ENSMAUG00000009263) #17	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727) #26	Pum3 (ENSMAUG00000009733) #27	Rfx3 (ENSMAUG00000009987) #29	Slc1a1 (ENSMAUG00000009046) #33	Plpp6 (ENSMAUG00000001915) #35	Spata6l (ENSMAUG00000010530) #34	Cdc37l1 (ENSMAUG00000008847) #36	Ak3 (ENSMAUG00000008253) #37	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)	Plgrkt (ENSMAUG00000007601)	Cd274 (ENSMAUG00000008788)
Golden Hamster	MODERN SPECIES	617	Entrep1 (ENSMAUG00000010196)	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912) #7	Fam122a (ENSMAUG00000002386) #8	Tmem252 (ENSMAUG00000008962) #10	Pgm5 (ENSMAUG00000009185) #11	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #16	ENSMAUG00000009191 #16	Kank1 (ENSMAUG00000009263) #17	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727) #26	Pum3 (ENSMAUG00000009733) #27	Rfx3 (ENSMAUG00000009987) #29	Slc1a1 (ENSMAUG00000009046) #33	Plpp6 (ENSMAUG00000001915) #35	Spata6l (ENSMAUG00000010530) #34	Cdc37l1 (ENSMAUG00000008847) #36	Ak3 (ENSMAUG00000008253) #37	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)	Plgrkt (ENSMAUG00000007601)
Golden Hamster	MODERN SPECIES	617	Apba1 (ENSMAUG00000009290)	Entrep1 (ENSMAUG00000010196)	Tjp2 (ENSMAUG00000008987)	Fxn (ENSMAUG00000009158)	Pip5k1b (ENSMAUG00000010912) #7	Fam122a (ENSMAUG00000002386) #8	Tmem252 (ENSMAUG00000008962) #10	Pgm5 (ENSMAUG00000009185) #11	Cbwd1 (ENSMAUG00000009107) #14	ENSMAUG00000009538 #16	ENSMAUG00000009191 #16	Kank1 (ENSMAUG00000009263) #17	ENSMAUG00000008975 #19	Dmrt3 (ENSMAUG00000008904) #20	Dmrt2 (ENSMAUG00000010038) #21	ENSMAUG00000010070 #22	ENSMAUG00000008807 #22	ENSMAUG00000008613 #22	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727) #26	Pum3 (ENSMAUG00000009733) #27	Rfx3 (ENSMAUG00000009987) #29	Slc1a1 (ENSMAUG00000009046) #33	Plpp6 (ENSMAUG00000001915) #35	Spata6l (ENSMAUG00000010530) #34	Cdc37l1 (ENSMAUG00000008847) #36	Ak3 (ENSMAUG00000008253) #37	Rcl1 (ENSMAUG00000008922)	Jak2 (ENSMAUG00000008571)	Insl6 (ENSMAUG00000008553)	Rln1 (ENSMAUG00000008598)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Marmotini_b	ANCESTRAL SPECIES	88	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Squirrel	MODERN SPECIES	103	TJP2 (ENSSTOG00000011181)	ENSSTOG00000033140	PIP5K1B (ENSSTOG00000023540) #7	PABIR1 (ENSSTOG00000022211) #8	TMEM252 (ENSSTOG00000008860) #10	PGM5 (ENSSTOG00000008834) #11	ENSSTOG00000029964 #13	ENSSTOG00000028764 #14	ENSSTOG00000031824	DOCK8 (ENSSTOG00000016411) #16	ENSSTOG00000030036	KANK1 (ENSSTOG00000010218) #17	DMRT1 (ENSSTOG00000010235) #19	DMRT3 (ENSSTOG00000023574) #20	DMRT2 (ENSSTOG00000026909) #21	SMARCA2 (ENSSTOG00000006812) #22	ENSSTOG00000031987 #24	VLDLR (ENSSTOG00000006880) #25	KCNV2 (ENSSTOG00000020003) #26	PUM3 (ENSSTOG00000009586) #27	RFX3 (ENSSTOG00000006974) #29	GLIS3 (ENSSTOG00000000302) #32	ENSSTOG00000031708	SLC1A1 (ENSSTOG00000023583) #33	PLPP6 (ENSSTOG00000025831) #35	SPATA6L (ENSSTOG00000000018) #34	CDC37L1 (ENSSTOG00000000020) #36	AK3 (ENSSTOG00000000021) #37	RCL1 (ENSSTOG00000000023)	JAK2 (ENSSTOG00000006679)	ENSSTOG00000016298
Arctic ground squirrel	MODERN SPECIES	335															DMRT2 (ENSUPAG00010017350) #21	SMARCA2 (ENSUPAG00010016919) #22	ENSUPAG00010016900 #24	VLDLR (ENSUPAG00010016811) #25	KCNV2 (ENSUPAG00010016794) #26	PUM3 (ENSUPAG00010016775) #27
Alpin marmot	MODERN SPECIES	32	FXN (ENSMMMG00000003605)	PIP5K1B (ENSMMMG00000003495) #7	PABIR1 (ENSMMMG00000003490) #8	TMEM252 (ENSMMMG00000003476) #10	PGM5 (ENSMMMG00000003460) #11	ENSMMMG00000003446 #13	ENSMMMG00000003411 #14	DOCK8 (ENSMMMG00000003328) #16	ENSMMMG00000003304	ENSMMMG00000003301	KANK1 (ENSMMMG00000003281) #17	DMRT1 (ENSMMMG00000003270) #19	DMRT3 (ENSMMMG00000003239) #20	DMRT2 (ENSMMMG00000003238) #21	ENSMMMG00000003212	SMARCA2 (ENSMMMG00000002811) #22	ENSMMMG00000002785	ENSMMMG00000002765 #24	VLDLR (ENSMMMG00000002594) #25	ENSMMMG00000002572	KCNV2 (ENSMMMG00000002550) #26	PUM3 (ENSMMMG00000002513) #27	ENSMMMG00000002504	GLIS3 (ENSMMMG00000002430) #32	ENSMMMG00000002416	ENSMMMG00000002405	SLC1A1 (ENSMMMG00000002380) #33	SPATA6L (ENSMMMG00000002361) #34	PLPP6 (ENSMMMG00000002356) #35	CDC37L1 (ENSMMMG00000002322) #36	AK3 (ENSMMMG00000002286) #37
Eurasian red squirrel	MODERN SPECIES	6	ENTREP1 (ENSSVLG00005022461)	TJP2 (ENSSVLG00005022528)	ENSSVLG00005022798	PIP5K1B (ENSSVLG00005022876) #7	PABIR1 (ENSSVLG00005023031) #8	TMEM252 (ENSSVLG00005023049) #10	PGM5 (ENSSVLG00005023081) #11	ENSSVLG00005023212 #13	ENSSVLG00005023230 #14	ENSSVLG00005023280	DOCK8 (ENSSVLG00005023344) #16	KANK1 (ENSSVLG00005023807) #17	DMRT1 (ENSSVLG00005023845) #19	DMRT3 (ENSSVLG00005023888) #20	DMRT2 (ENSSVLG00005023918) #21	SMARCA2 (ENSSVLG00005024009) #22	ENSSVLG00005024201 #24	VLDLR (ENSSVLG00005024232) #25	KCNV2 (ENSSVLG00005024318) #26	PUM3 (ENSSVLG00005024338) #27	ENSSVLG00005024401	RFX3 (ENSSVLG00005024420) #29	GLIS3 (ENSSVLG00005024543) #32	SLC1A1 (ENSSVLG00005024569) #33	SPATA6L (ENSSVLG00005024615) #34	PLPP6 (ENSSVLG00005024689) #35	CDC37L1 (ENSSVLG00005024699) #36	ENSSVLG00005024721 #37	RCL1 (ENSSVLG00005024752)	JAK2 (ENSSVLG00005024808)	INSL6 (ENSSVLG00005024849)
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Naked mole-rat female	MODERN SPECIES	3	TMEM252 (ENSHGLG00000033131) #10	PGM5 (ENSHGLG00000013086) #11	ENSHGLG00000046909 #13	CBWD3 (ENSHGLG00000015962) #14	ENSHGLG00000020779	DOCK8 (ENSHGLG00000016578) #16	ENSHGLG00000050403	ENSHGLG00000045832	KANK1 (ENSHGLG00000012000) #17	DMRT1 (ENSHGLG00000043033) #19	DMRT3 (ENSHGLG00000012858) #20	ENSHGLG00000033430 #21	ENSHGLG00000036415	ENSHGLG00000035319	ENSHGLG00000013697	ENSHGLG00000005215 #22	ENSHGLG00000035043	ENSHGLG00000016566	VLDLR (ENSHGLG00000016113) #25	KCNV2 (ENSHGLG00000015810) #26	ENSHGLG00000015868 #27	ENSHGLG00000016314	ENSHGLG00000042585	ENSHGLG00000019207	ENSHGLG00000018913 #29	ENSHGLG00000015091 #32	ENSHGLG00000032696	ENSHGLG00000017534	SLC1A1 (ENSHGLG00000015155) #33	PLPP6 (ENSHGLG00000038858) #35	SPATA6L (ENSHGLG00000018477) #34
Hystricomorpha_a	DUPLICATION
Hystricomorpha_a	DUPLICATION
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.a #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.a #22
Degu	MODERN SPECIES	257						NEK3 (ENSODEG00000001087)	CKAP2 (ENSODEG00000001025)	VPS36 (ENSODEG00000000909)	THSD1 (ENSODEG00000000849)	ENSODEG00000000791	ENSODEG00000000772	ENSODEG00000000759	ENSODEG00000000752	FOXO1 (ENSODEG00000000747)	ENSODEG00000000728	ENSODEG00000000717 #22	COG6 (ENSODEG00000003859)	LHFPL6 (ENSODEG00000003836)	ENSODEG00000003473	PROSER1 (ENSODEG00000003365)	ENSODEG00000003312	ENSODEG00000003298	ENSODEG00000003236	TWSG1 (ENSODEG00000003220)	RALBP1 (ENSODEG00000001763)	PPP4R1 (ENSODEG00000001319)	RAB31 (ENSODEG00000001085)	VAPA (ENSODEG00000001065)	APCDD1 (ENSODEG00000001023)	ENSODEG00000000963	PIEZO2 (ENSODEG00000000546)
Guinea pig	MODERN SPECIES	13	ENSCPOG00000031141	ENSCPOG00000034500	TRDC (ENSCPOG00000000844)	ENSCPOG00000033000	ENSCPOG00000040263	OR4E2 (ENSCPOG00000026054)	OR10G2 (ENSCPOG00000039240)	SALL2 (ENSCPOG00000040220)	METTL3 (ENSCPOG00000002545)	TOX4 (ENSCPOG00000025504)	RAB2B (ENSCPOG00000026575)	CHD8 (ENSCPOG00000002538)	SUPT16H (ENSCPOG00000002534)	RPGRIP1 (ENSCPOG00000002526)	ENSCPOG00000001474	ENSCPOG00000035385 #22	TMEM253 (ENSCPOG00000031716)	ZNF219 (ENSCPOG00000022085)	ARHGEF40 (ENSCPOG00000012862)	ENSCPOG00000034881	RNASE13 (ENSCPOG00000019970)	TPPP2 (ENSCPOG00000023279)	NDRG2 (ENSCPOG00000002625)	ENSCPOG00000031550	ENSCPOG00000027335	ENSCPOG00000035683	ENSCPOG00000031798	ENSCPOG00000038384	ENSCPOG00000026584	ENSCPOG00000036707	OR6S1 (ENSCPOG00000011915)
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.b #22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000154821.b.c.b #22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	76	ENSODEG00000015493	UPK3B (ENSODEG00000015729)	DTX2 (ENSODEG00000015332)	ENSODEG00000016251	SSC4D (ENSODEG00000015613)	YWHAG (ENSODEG00000016579)	HSPB1 (ENSODEG00000015698)	ENSODEG00000016162	SRRM3 (ENSODEG00000015988)	ENSODEG00000015859	ENSODEG00000020351	STYXL1 (ENSODEG00000015904)	TMEM120A (ENSODEG00000015559)	POR (ENSODEG00000015517)	RHBDD2 (ENSODEG00000016225)	ENSODEG00000015918 #22	ENSODEG00000015707	ENSODEG00000020305	CCL24 (ENSODEG00000015142)	HIP1 (ENSODEG00000016265)	ENSODEG00000015346	NSUN5 (ENSODEG00000015132)	TRIM50 (ENSODEG00000015712)	FKBP6 (ENSODEG00000016257)	FZD9 (ENSODEG00000020544)	BAZ1B (ENSODEG00000015361)	BCL7B (ENSODEG00000015813)	TBL2 (ENSODEG00000016440)	MLXIPL (ENSODEG00000015218)	ENSODEG00000015421	DNAJC30 (ENSODEG00000015782)
Degu	MODERN SPECIES	53	CDKN1B (ENSODEG00000012537)	GPR19 (ENSODEG00000013191)	CREBL2 (ENSODEG00000009860)	ENSODEG00000019647	DUSP16 (ENSODEG00000009500)	ENSODEG00000008969	MANSC1 (ENSODEG00000009259)	LRP6 (ENSODEG00000008930)	BCL2L14 (ENSODEG00000008991)	ETV6 (ENSODEG00000009759)	ENSODEG00000009522	ENSODEG00000008835	ENSODEG00000010368	ENSODEG00000009595	ENSODEG00000010351	ENSODEG00000009496 #22	ENSODEG00000009605	ENSODEG00000009202	CLEC12B (ENSODEG00000009413)	CLEC1B (ENSODEG00000009886)	CLEC1A (ENSODEG00000009200)	CLEC7A (ENSODEG00000008833)	TMEM52B (ENSODEG00000010426)	GABARAPL1 (ENSODEG00000010037)	ENSODEG00000009587	KLRD1 (ENSODEG00000010635)
Degu	MODERN SPECIES	47	ENSODEG00000007912	CC2D2A (ENSODEG00000008363)	FBXL5 (ENSODEG00000009798)	BST1 (ENSODEG00000008525)	CD38 (ENSODEG00000008127)	PROM1 (ENSODEG00000011756)	TAPT1 (ENSODEG00000007601)	LDB2 (ENSODEG00000010335)	QDPR (ENSODEG00000009810)	CLRN2 (ENSODEG00000009531)	ENSODEG00000008724	MED28 (ENSODEG00000010235)	FAM184B (ENSODEG00000008017)	NCAPG (ENSODEG00000007988)	ENSODEG00000007625	ENSODEG00000007550 #22	SLIT2 (ENSODEG00000011554)	ENSODEG00000009142	KCNIP4 (ENSODEG00000009132)	ADGRA3 (ENSODEG00000008912)	GBA3 (ENSODEG00000007983)	ENSODEG00000008409	ENSODEG00000008891	ENSODEG00000008421	LGI2 (ENSODEG00000009206)	SEPSECS (ENSODEG00000010607)	PI4K2B (ENSODEG00000008999)	ENSODEG00000007449	ENSODEG00000006972	ENSODEG00000019525	SLC34A2 (ENSODEG00000010839)
Degu	MODERN SPECIES	48	ENSODEG00000013469	SLC10A1 (ENSODEG00000013278)	ENSODEG00000014061	SMOC1 (ENSODEG00000012836)	ENSODEG00000014278	SLC8A3 (ENSODEG00000013865)	SYNJ2BP (ENSODEG00000014092)	FLVCR2 (ENSODEG00000013854)	ERG28 (ENSODEG00000013861)	ENSODEG00000012504	ENSODEG00000013591	TGFB3 (ENSODEG00000013103)	IFT43 (ENSODEG00000013768)	ENSODEG00000012743	GPATCH2L (ENSODEG00000013474)	ENSODEG00000013347 #22	ESRRB (ENSODEG00000013419)	VASH1 (ENSODEG00000012506)	ENSODEG00000019977	ANGEL1 (ENSODEG00000012416)	LRRC74A (ENSODEG00000013756)	CIPC (ENSODEG00000012302)	ZDHHC22 (ENSODEG00000016163)	TMEM63C (ENSODEG00000013078)	ENSODEG00000011875	ENSODEG00000014820	POMT2 (ENSODEG00000012188)	GSTZ1 (ENSODEG00000012019)	TMED8 (ENSODEG00000012850)	NOXRED1 (ENSODEG00000013652)	VIPAS39 (ENSODEG00000013197)
Degu	MODERN SPECIES	173	ENSODEG00000019887	PRXL2A (ENSODEG00000012446)	TSPAN14 (ENSODEG00000010478)	SH2D4B (ENSODEG00000013141)	NRG3 (ENSODEG00000011562)	ENSODEG00000012959	ENSODEG00000011340	ENSODEG00000012481	CDHR1 (ENSODEG00000010766)	LRIT2 (ENSODEG00000011609)	LRIT1 (ENSODEG00000012611)	RGR (ENSODEG00000011393)	CCSER2 (ENSODEG00000010793)	GRID1 (ENSODEG00000011958)	ENSODEG00000011516	ENSODEG00000019892 #22	ENSODEG00000011721	OPN4 (ENSODEG00000011887)	ENSODEG00000011383	ENSODEG00000019882	BMPR1A (ENSODEG00000011436)	ENSODEG00000012425	SNCG (ENSODEG00000012548)	ENSODEG00000012123	ENSODEG00000011593	SHLD2 (ENSODEG00000012114)	ENSODEG00000020251	ENSODEG00000011514	ZNF488 (ENSODEG00000011943)	RBP3 (ENSODEG00000012586)	GDF2 (ENSODEG00000012030)
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b.d #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489.n #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b.d #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00900000143153	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.c.a	ENSGT00940000155640	ENSGT00940000154434.b
Long-tailed chinchilla	MODERN SPECIES	141	PTAR1 (ENSCLAG00000008830)	APBA1 (ENSCLAG00000006043)	ENTREP1 (ENSCLAG00000007506)	TJP2 (ENSCLAG00000012841)	FXN (ENSCLAG00000009225)	PIP5K1B (ENSCLAG00000011292) #7	TMEM252 (ENSCLAG00000005523) #10	PGM5 (ENSCLAG00000005854) #11	ENSCLAG00000006762 #13	ENSCLAG00000005076 #14	DOCK8 (ENSCLAG00000005204) #16	KANK1 (ENSCLAG00000015509) #17	DMRT1 (ENSCLAG00000015238) #19	DMRT3 (ENSCLAG00000015537) #20	DMRT2 (ENSCLAG00000006168) #21	SMARCA2 (ENSCLAG00000014484) #22	VLDLR (ENSCLAG00000007543) #25	KCNV2 (ENSCLAG00000013226) #26	PUM3 (ENSCLAG00000011892) #27	RFX3 (ENSCLAG00000009044) #29	GLIS3 (ENSCLAG00000008116) #32	ENSCLAG00000009238	SLC1A1 (ENSCLAG00000009832) #33	ENSCLAG00000009476	SPATA6L (ENSCLAG00000010497) #34	PLPP6 (ENSCLAG00000017735) #35	CDC37L1 (ENSCLAG00000005805) #36	AK3 (ENSCLAG00000006329) #37	RCL1 (ENSCLAG00000007445)	JAK2 (ENSCLAG00000005091)	INSL6 (ENSCLAG00000007423)
Degu	MODERN SPECIES	128	FXN (ENSODEG00000003413)	PIP5K1B (ENSODEG00000003585) #7	ENSODEG00000003739	PABIR1 (ENSODEG00000019013) #8	TMEM252 (ENSODEG00000003841) #10	PGM5 (ENSODEG00000003917) #11	ENSODEG00000003983 #14	ENSODEG00000004467 #16	ENSODEG00000004602 #16	ENSODEG00000004711 #16	ENSODEG00000004719	KANK1 (ENSODEG00000004766) #17	DMRT1 (ENSODEG00000004898) #19	DMRT3 (ENSODEG00000004984) #20	DMRT2 (ENSODEG00000004992) #21	SMARCA2 (ENSODEG00000005452) #22	ENSODEG00000006378 #24	ENSODEG00000003492 #25	KCNV2 (ENSODEG00000003536) #26	ENSODEG00000003625 #27	RFX3 (ENSODEG00000003682) #29	GLIS3 (ENSODEG00000003731) #32	SLC1A1 (ENSODEG00000003884) #33	ENSODEG00000003949	SPATA6L (ENSODEG00000004066) #34	PLPP6 (ENSODEG00000019026) #35	CDC37L1 (ENSODEG00000004185) #36	ENSODEG00000004121 #37	RCL1 (ENSODEG00000004151)	JAK2 (ENSODEG00000004208)	ENSODEG00000004220
Guinea pig	MODERN SPECIES	21	PTAR1 (ENSCPOG00000008368)	APBA1 (ENSCPOG00000032780)	ENTREP1 (ENSCPOG00000003236)	TJP2 (ENSCPOG00000021062)	FXN (ENSCPOG00000004293)	PIP5K1B (ENSCPOG00000004288) #7	PABIR1 (ENSCPOG00000003280) #8	TMEM252 (ENSCPOG00000013771) #10	PGM5 (ENSCPOG00000015031) #11	ENSCPOG00000019718 #14	DOCK8 (ENSCPOG00000008366) #16	KANK1 (ENSCPOG00000008389) #17	DMRT1 (ENSCPOG00000005909) #19	DMRT3 (ENSCPOG00000005912) #20	DMRT2 (ENSCPOG00000008452) #21	SMARCA2 (ENSCPOG00000005475) #22	VLDLR (ENSCPOG00000007685) #25	KCNV2 (ENSCPOG00000032893) #26	ENSCPOG00000008552 #27	RFX3 (ENSCPOG00000000900) #29	GLIS3 (ENSCPOG00000005523) #32	ENSCPOG00000030794	SLC1A1 (ENSCPOG00000011151) #33	PLPP6 (ENSCPOG00000012931) #35	SPATA6L (ENSCPOG00000012925) #34	CDC37L1 (ENSCPOG00000030938) #36	AK3 (ENSCPOG00000011927) #37	RCL1 (ENSCPOG00000015354)	JAK2 (ENSCPOG00000014653)	INSL6 (ENSCPOG00000002694)	ENSCPOG00000001365
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000154821.b #22
Pika	MODERN SPECIES	4399																SMARCA2 (ENSOPRG00000013474) #22
Rabbit	MODERN SPECIES		ENSOCUG00000014142 #10	PGM5 (ENSOCUG00000014125) #11	ENSOCUG00000010467 #13	ENSOCUG00000000733 #14	DOCK8 (ENSOCUG00000003208) #16	KANK1 (ENSOCUG00000004753) #17	ENSOCUG00000036685	DMRT3 (ENSOCUG00000004582) #20	ENSOCUG00000027863	DMRT2 (ENSOCUG00000003299) #21	ENSOCUG00000037388	ENSOCUG00000034834	ENSOCUG00000023438	ENSOCUG00000035677	ENSOCUG00000000241	SMARCA2 (ENSOCUG00000006320) #22	ENSOCUG00000022775	VLDLR (ENSOCUG00000002231) #25	KCNV2 (ENSOCUG00000004385) #26	ENSOCUG00000004189 #27	ENSOCUG00000039572	RFX3 (ENSOCUG00000014086) #29	ENSOCUG00000023393	ENSOCUG00000027590	GLIS3 (ENSOCUG00000023004) #32	ENSOCUG00000036407	ENSOCUG00000013264 #33	ENSOCUG00000026987	ENSOCUG00000022202 #33	PLPP6 (ENSOCUG00000003465) #35	SPATA6L (ENSOCUG00000003455) #34
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154821.b #22
Hedgehog	MODERN SPECIES	8952																ENSEEUG00000015540 #22
Common shrew	MODERN SPECIES	6943																SMARCA2 (ENSSARG00000007888) #22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Suina	ANCESTRAL SPECIES	23	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00520000061590 #24	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Chacoan peccary	MODERN SPECIES	20	TJP2 (ENSCWAG00000018633)	ENSCWAG00000019132	FXN (ENSCWAG00000019158)	PIP5K1B (ENSCWAG00000019197) #7	PABIR1 (ENSCWAG00000019304) #8	TMEM252 (ENSCWAG00000019312) #10	PGM5 (ENSCWAG00000019336) #11	ENSCWAG00000019440 #13	ENSCWAG00000019496 #14	DOCK8 (ENSCWAG00000019884) #16	KANK1 (ENSCWAG00000020332) #17	DMRT1 (ENSCWAG00000020382) #19	DMRT3 (ENSCWAG00000020400) #20	DMRT2 (ENSCWAG00000020422) #21	ENSCWAG00000020471	SMARCA2 (ENSCWAG00000020512) #22	VLDLR (ENSCWAG00000020653) #25	ENSCWAG00000020684 #24	KCNV2 (ENSCWAG00000020693) #26	PUM3 (ENSCWAG00000020700) #27	RFX3 (ENSCWAG00000020726) #29	ENSCWAG00000020759	GLIS3 (ENSCWAG00000020767) #32	SLC1A1 (ENSCWAG00000020776) #33	SPATA6L (ENSCWAG00000020801) #34	PLPP6 (ENSCWAG00000020823) #35	CDC37L1 (ENSCWAG00000020832) #36	AK3 (ENSCWAG00000020856) #37	RCL1 (ENSCWAG00000020883)	ENSCWAG00000020913	ENSCWAG00000020920
Pig	DUPLICATION
Pig	MODERN SPECIES		PIP5K1B (ENSSSCG00000027161) #7	PABIR1 (ENSSSCG00000057474) #8	TMEM252 (ENSSSCG00000037125) #10	PGM5 (ENSSSCG00000005243) #11	ENSSSCG00000041279 #13	ENSSSCG00000005241 #14	DOCK8 (ENSSSCG00000005240) #16	KANK1 (ENSSSCG00000005235) #17	DMRT1 (ENSSSCG00000005236) #19	DMRT3 (ENSSSCG00000040481) #20	DMRT2 (ENSSSCG00000005233) #21	ENSSSCG00000046403	ENSSSCG00000044946	ENSSSCG00000032324	ENSSSCG00000057314 #22	ENSSSCG00000005232 #22	ENSSSCG00000041522	ENSSSCG00000052990	ENSSSCG00000040670 #24	VLDLR (ENSSSCG00000005229) #25	KCNV2 (ENSSSCG00000005228) #26	PUM3 (ENSSSCG00000005227) #27	ENSSSCG00000039823	RFX3 (ENSSSCG00000005225) #29	GLIS3 (ENSSSCG00000005224) #32	SLC1A1 (ENSSSCG00000005222) #33	PLPP6 (ENSSSCG00000005220) #35	SPATA6L (ENSSSCG00000005221) #34	CDC37L1 (ENSSSCG00000005219) #36	AK3 (ENSSSCG00000023595) #37	ENSSSCG00000058562
Pig	MODERN SPECIES		ENSSSCG00000032999	PIP5K1B (ENSSSCG00000027161) #7	PABIR1 (ENSSSCG00000057474) #8	TMEM252 (ENSSSCG00000037125) #10	PGM5 (ENSSSCG00000005243) #11	ENSSSCG00000041279 #13	ENSSSCG00000005241 #14	DOCK8 (ENSSSCG00000005240) #16	KANK1 (ENSSSCG00000005235) #17	DMRT1 (ENSSSCG00000005236) #19	DMRT3 (ENSSSCG00000040481) #20	DMRT2 (ENSSSCG00000005233) #21	ENSSSCG00000046403	ENSSSCG00000044946	ENSSSCG00000032324	ENSSSCG00000057314 #22	ENSSSCG00000005232 #22	ENSSSCG00000041522	ENSSSCG00000052990	ENSSSCG00000040670 #24	VLDLR (ENSSSCG00000005229) #25	KCNV2 (ENSSSCG00000005228) #26	PUM3 (ENSSSCG00000005227) #27	ENSSSCG00000039823	RFX3 (ENSSSCG00000005225) #29	GLIS3 (ENSSSCG00000005224) #32	SLC1A1 (ENSSSCG00000005222) #33	PLPP6 (ENSSSCG00000005220) #35	SPATA6L (ENSSSCG00000005221) #34	CDC37L1 (ENSSSCG00000005219) #36	AK3 (ENSSSCG00000023595) #37
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Yarkand deer	MODERN SPECIES	21	FXN (ENSCHYG00000017028)	ENSCHYG00000016971	PIP5K1B (ENSCHYG00000016753) #7	PABIR1 (ENSCHYG00000016706) #8	TMEM252 (ENSCHYG00000016651) #10	ENSCHYG00000016626	PGM5 (ENSCHYG00000016305) #11	ENSCHYG00000016258 #13	ENSCHYG00000015376 #14	DOCK8 (ENSCHYG00000014734) #16	KANK1 (ENSCHYG00000014368) #17	ENSCHYG00000014288	DMRT1 (ENSCHYG00000014189) #19	DMRT3 (ENSCHYG00000026880) #20	DMRT2 (ENSCHYG00000026873) #21	SMARCA2 (ENSCHYG00000026820) #22	ENSCHYG00000026782 #24	VLDLR (ENSCHYG00000026763) #25	KCNV2 (ENSCHYG00000026745) #26	PUM3 (ENSCHYG00000026723) #27	RFX3 (ENSCHYG00000026695) #29	GLIS3 (ENSCHYG00000026667) #32	SLC1A1 (ENSCHYG00000026638) #33	PLPP6 (ENSCHYG00000026621) #35	SPATA6L (ENSCHYG00000026599) #34	CDC37L1 (ENSCHYG00000026576) #36	AK3 (ENSCHYG00000026564) #37	RCL1 (ENSCHYG00000026548)	JAK2 (ENSCHYG00000026521)	INSL6 (ENSCHYG00000026514)	PLGRKT (ENSCHYG00000026504)
Percora_a	ANCESTRAL SPECIES	24	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Siberian musk deer	MODERN SPECIES	112	PIP5K1B (ENSMMSG00000003205) #7	PABIR1 (ENSMMSG00000003185) #8	ENSMMSG00000003177	TMEM252 (ENSMMSG00000003173) #10	PGM5 (ENSMMSG00000003148) #11	ENSMMSG00000003127 #13	ENSMMSG00000002933 #14	ENSMMSG00000002885	DOCK8 (ENSMMSG00000002837) #16	KANK1 (ENSMMSG00000002767) #17	ENSMMSG00000002748	DMRT1 (ENSMMSG00000002731) #19	DMRT3 (ENSMMSG00000002720) #20	DMRT2 (ENSMMSG00000002675) #21	ENSMMSG00000002655	SMARCA2 (ENSMMSG00000002325) #22	ENSMMSG00000002272
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00660000097148	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Goat	MODERN SPECIES	27	PTAR1 (ENSCHIG00000007358)	APBA1 (ENSCHIG00000016850)	ENSCHIG00000022109	TJP2 (ENSCHIG00000009916)	FXN (ENSCHIG00000019169)	PIP5K1B (ENSCHIG00000015013) #7	TMEM252 (ENSCHIG00000021046) #10	PGM5 (ENSCHIG00000006743) #11	ENSCHIG00000006716 #13	ENSCHIG00000024887 #14	DOCK8 (ENSCHIG00000014695) #16	KANK1 (ENSCHIG00000018134) #17	DMRT1 (ENSCHIG00000024212) #19	DMRT3 (ENSCHIG00000013041) #20	DMRT2 (ENSCHIG00000020138) #21	SMARCA2 (ENSCHIG00000025863) #22	ENSCHIG00000012185 #24	VLDLR (ENSCHIG00000021572) #25	KCNV2 (ENSCHIG00000011625) #26	PUM3 (ENSCHIG00000021559) #27	RFX3 (ENSCHIG00000011556) #29	ENSCHIG00000019534 #32	ENSCHIG00000007959	SLC1A1 (ENSCHIG00000018337) #33	PLPP6 (ENSCHIG00000001745) #35	SPATA6L (ENSCHIG00000020946) #34	ENSCHIG00000010369	CDC37L1 (ENSCHIG00000025238) #36	AK3 (ENSCHIG00000024602) #37	RCL1 (ENSCHIG00000012407)	INSL6 (ENSCHIG00000020505)
Rambouillet Sheep	MODERN SPECIES	11	APBA1 (ENSOARG00020019533)	ENTREP1 (ENSOARG00020019624)	ENSOARG00020019784	TJP2 (ENSOARG00020019889)	PIP5K1B (ENSOARG00020021769) #7	ENSOARG00020022107	FAM122A (ENSOARG00020022127) #8	TMEM252 (ENSOARG00020022146) #10	PGM5 (ENSOARG00020022177) #11	ENSOARG00020022393 #14	DOCK8 (ENSOARG00020022900) #16	KANK1 (ENSOARG00020024004) #17	DMRT1 (ENSOARG00020024107) #19	DMRT3 (ENSOARG00020024138) #20	DMRT2 (ENSOARG00020024148) #21	SMARCA2 (ENSOARG00020024243) #22	VLDLR (ENSOARG00020024482) #25	ENSOARG00020024556 #24	KCNV2 (ENSOARG00020006537) #26	PUM3 (ENSOARG00020006587) #27	ENSOARG00020006681	RFX3 (ENSOARG00020006756) #29	GLIS3 (ENSOARG00020007233) #32	SLC1A1 (ENSOARG00020007364) #33	PLPP6 (ENSOARG00020007422) #35	ENSOARG00020007455	CDC37L1 (ENSOARG00020007479) #36	AK3 (ENSOARG00020007523) #37	RCL1 (ENSOARG00020007598)	JAK2 (ENSOARG00020007686)	ENSOARG00020007887
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
American bison	MODERN SPECIES	3328	ENTREP1 (ENSBBBG00000004748)	TJP2 (ENSBBBG00000018750)	FXN (ENSBBBG00000018035)	PIP5K1B (ENSBBBG00000008201) #7	PABIR1 (ENSBBBG00000017969) #8	TMEM252 (ENSBBBG00000017966) #10	PGM5 (ENSBBBG00000004418) #11	ENSBBBG00000017925	ENSBBBG00000017865 #14	DOCK8 (ENSBBBG00000017006) #16	ENSBBBG00000000733	KANK1 (ENSBBBG00000007906) #17	DMRT1 (ENSBBBG00000016649) #19	DMRT3 (ENSBBBG00000016636) #20	DMRT2 (ENSBBBG00000016627) #21	SMARCA2 (ENSBBBG00000004105) #22	ENSBBBG00000016209	VLDLR (ENSBBBG00000008333) #25	ENSBBBG00000007174 #24	KCNV2 (ENSBBBG00000016123) #26	PUM3 (ENSBBBG00000007035) #27	RFX3 (ENSBBBG00000003993) #29	GLIS3 (ENSBBBG00000016019) #32	SLC1A1 (ENSBBBG00000015989) #33	SPATA6L (ENSBBBG00000015978) #34	PLPP6 (ENSBBBG00000015953) #35	ENSBBBG00000003969	CDC37L1 (ENSBBBG00000002586) #36	AK3 (ENSBBBG00000003960) #37	RCL1 (ENSBBBG00000015884)	JAK2 (ENSBBBG00000015845)
Bos	ANCESTRAL SPECIES	10	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00390000000375
Hybrid Bos Indicus	MODERN SPECIES	27	APBA1 (ENSBIXG00005000159)	ENTREP1 (ENSBIXG00005015945)	TJP2 (ENSBIXG00005016444)	FXN (ENSBIXG00005016495)	PIP5K1B (ENSBIXG00005002661) #7	TMEM252 (ENSBIXG00005002669) #10	ENSBIXG00005002670	PGM5 (ENSBIXG00005016605) #11	ENSBIXG00005016626 #13	ENSBIXG00005017167 #14	DOCK8 (ENSBIXG00005002913) #16	KANK1 (ENSBIXG00005018119) #17	DMRT1 (ENSBIXG00005018189) #19	DMRT3 (ENSBIXG00005018199) #20	DMRT2 (ENSBIXG00005018266) #21	SMARCA2 (ENSBIXG00005018551) #22	ENSBIXG00005005990 #24	VLDLR (ENSBIXG00005003037) #25	KCNV2 (ENSBIXG00005018778) #26	PUM3 (ENSBIXG00005018805) #27	ENSBIXG00005018899	RFX3 (ENSBIXG00005003091) #29	GLIS3 (ENSBIXG00005002642) #32	ENSBIXG00005019106	SLC1A1 (ENSBIXG00005019133) #33	PLPP6 (ENSBIXG00005019138) #35	ENSBIXG00005019159	SPATA6L (ENSBIXG00005019220) #34	CDC37L1 (ENSBIXG00005019277) #36	AK3 (ENSBIXG00005019326) #37	RCL1 (ENSBIXG00005019414)
Cow	MODERN SPECIES	27	ENTREP1 (ENSBTAG00000011173)	TJP2 (ENSBTAG00000011770)	FXN (ENSBTAG00000001306)	PIP5K1B (ENSBTAG00000009917) #7	TMEM252 (ENSBTAG00000011874) #10	ENSBTAG00000049235	PGM5 (ENSBTAG00000033190) #11	ENSBTAG00000033122 #13	ENSBTAG00000000269 #14	ENSBTAG00000049728	DOCK8 (ENSBTAG00000002190) #16	KANK1 (ENSBTAG00000010976) #17	DMRT1 (ENSBTAG00000033352) #19	DMRT3 (ENSBTAG00000017800) #20	DMRT2 (ENSBTAG00000008062) #21	SMARCA2 (ENSBTAG00000007494) #22	ENSBTAG00000051041	ENSBTAG00000048500 #24	VLDLR (ENSBTAG00000018517) #25	KCNV2 (ENSBTAG00000017884) #26	PUM3 (ENSBTAG00000013357) #27	RFX3 (ENSBTAG00000000819) #29	ENSBTAG00000014467	ENSBTAG00000052736	SLC1A1 (ENSBTAG00000019125)	PLPP6 (ENSBTAG00000011050)	ENSBTAG00000046486	SPATA6L (ENSBTAG00000011048)	CDC37L1 (ENSBTAG00000017137)	AK3 (ENSBTAG00000017147)	RCL1 (ENSBTAG00000018667)
Bos_a	ANCESTRAL SPECIES	30	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #11	ENSGT00390000009110.fb	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00910000144347.a.a	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Domestic yak	MODERN SPECIES	26	TJP2 (ENSBGRG00000001216)	ENSBGRG00000002457	PIP5K1B (ENSBGRG00000002519) #7	TMEM252 (ENSBGRG00000002724) #10	PGM5 (ENSBGRG00000002775) #11	ENSBGRG00000002858	ENSBGRG00000002865	ENSBGRG00000002878 #13	ENSBGRG00000002972 #14	DOCK8 (ENSBGRG00000003466) #16	ENSBGRG00000003655	KANK1 (ENSBGRG00000003717) #17	DMRT1 (ENSBGRG00000003868) #19	DMRT3 (ENSBGRG00000003946) #20	DMRT2 (ENSBGRG00000003984) #21	SMARCA2 (ENSBGRG00000004107) #22	VLDLR (ENSBGRG00000004545) #25	KCNV2 (ENSBGRG00000004767) #26	PUM3 (ENSBGRG00000004833) #27	ENSBGRG00000004951	RFX3 (ENSBGRG00000004985) #29	ENSBGRG00000005081	ENSBGRG00000005096	GLIS3 (ENSBGRG00000005123) #32	SLC1A1 (ENSBGRG00000005214) #33	SPATA6L (ENSBGRG00000005420) #34	PLPP6 (ENSBGRG00000005557) #35	ENSBGRG00000005568	CDC37L1 (ENSBGRG00000005637) #36	AK3 (ENSBGRG00000005727) #37	RCL1 (ENSBGRG00000005812)
Wild yak	MODERN SPECIES	1150				FXN (ENSBMUG00000009346)	PIP5K1B (ENSBMUG00000009326) #7	TMEM252 (ENSBMUG00000009272) #10	PGM5 (ENSBMUG00000009266) #11	ENSBMUG00000009246	ENSBMUG00000009244 #13	ENSBMUG00000008736 #14	DOCK8 (ENSBMUG00000008468) #16	KANK1 (ENSBMUG00000008397) #17	ENSBMUG00000008309 #19	DMRT3 (ENSBMUG00000008302) #20	DMRT2 (ENSBMUG00000008275) #21	SMARCA2 (ENSBMUG00000008202) #22
Cetacea	ANCESTRAL SPECIES	9	ENSGT00990000210075	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00940000164995	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Blue whale	MODERN SPECIES	17	ENSBMSG00010001005	TJP2 (ENSBMSG00010000778)	FXN (ENSBMSG00010000687)	PIP5K1B (ENSBMSG00010000638) #7	ENSBMSG00010000615 #8	TMEM252 (ENSBMSG00010000603) #10	PGM5 (ENSBMSG00010000557) #11	ENSBMSG00010000512 #13	ENSBMSG00010000431	DOCK8 (ENSBMSG00010000177) #16	ENSBMSG00010000100	KANK1 (ENSBMSG00010000089) #17	DMRT1 (ENSBMSG00010004442) #19	DMRT3 (ENSBMSG00010004420) #20	DMRT2 (ENSBMSG00010004396) #21	SMARCA2 (ENSBMSG00010004262) #22	VLDLR (ENSBMSG00010004233) #25	KCNV2 (ENSBMSG00010004219) #26	PUM3 (ENSBMSG00010004204) #27	RFX3 (ENSBMSG00010004165) #29	GLIS3 (ENSBMSG00010004124) #32	SLC1A1 (ENSBMSG00010004095) #33	PLPP6 (ENSBMSG00010004080) #35	SPATA6L (ENSBMSG00010004050) #34	CDC37L1 (ENSBMSG00010004036) #36	AK3 (ENSBMSG00010004013) #37	RCL1 (ENSBMSG00010003993)	JAK2 (ENSBMSG00010003969)	INSL6 (ENSBMSG00010003955)	ENSBMSG00010003948	PLGRKT (ENSBMSG00010003942)
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000005811.f	ENSGT00990000210075	ENSGT00390000005811.e.a	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000165777.a.a	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.f	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000165777.a.a	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Dolphin	MODERN SPECIES	2679																SMARCA2 (ENSTTRG00000002033) #22
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000158634	ENSGT00390000005811.f.b	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000158634	ENSGT00390000005811.f.b	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Narwhal	MODERN SPECIES	312	TJP2 (ENSMMNG00015013657)	FXN (ENSMMNG00015013572)	PIP5K1B (ENSMMNG00015013540) #7	PABIR1 (ENSMMNG00015013514) #8	TMEM252 (ENSMMNG00015013503) #10	PGM5 (ENSMMNG00015013485) #11	ENSMMNG00015013464 #13	ENSMMNG00015013419 #14	DOCK8 (ENSMMNG00015013245) #16	KANK1 (ENSMMNG00015013138) #17	DMRT1 (ENSMMNG00015013112) #19	DMRT3 (ENSMMNG00015013099) #20	DMRT2 (ENSMMNG00015013077) #21	ENSMMNG00015021427	ENSMMNG00015021422	SMARCA2 (ENSMMNG00015021345) #22	VLDLR (ENSMMNG00015021252) #25	KCNV2 (ENSMMNG00015021226) #26	PUM3 (ENSMMNG00015021202) #27	ENSMMNG00015021179	RFX3 (ENSMMNG00015021042) #29	GLIS3 (ENSMMNG00015021011) #32	SLC1A1 (ENSMMNG00015020990) #33	PLPP6 (ENSMMNG00015020983) #35	SPATA6L (ENSMMNG00015020944) #34	CDC37L1 (ENSMMNG00015020918) #36	AK3 (ENSMMNG00015020890) #37	RCL1 (ENSMMNG00015020841)	JAK2 (ENSMMNG00015020808)	ENSMMNG00015020785	ENSMMNG00015020775
Beluga whale	MODERN SPECIES	50	FXN (ENSDLEG00000011543)	PIP5K1B (ENSDLEG00000011558) #7	PABIR1 (ENSDLEG00000011588) #8	TMEM252 (ENSDLEG00000011598) #10	PGM5 (ENSDLEG00000011615) #11	ENSDLEG00000011631 #13	ENSDLEG00000011652 #14	DOCK8 (ENSDLEG00000012329) #16	KANK1 (ENSDLEG00000019090) #17	DMRT1 (ENSDLEG00000019261) #19	DMRT3 (ENSDLEG00000019280) #20	ENSDLEG00000019284 ##21	DMRT2 (ENSDLEG00000019289) #21	ENSDLEG00000019303	ENSDLEG00000019309	SMARCA2 (ENSDLEG00000019318) #22	VLDLR (ENSDLEG00000019340) #25	KCNV2 (ENSDLEG00000019382) #26	PUM3 (ENSDLEG00000019389) #27	RFX3 (ENSDLEG00000019460) #29	ENSDLEG00000019514 #32	ENSDLEG00000019522	SLC1A1 (ENSDLEG00000019531) #33	ENSDLEG00000019547 #34	ENSDLEG00000019609 #34	PLPP6 (ENSDLEG00000019637) #35	CDC37L1 (ENSDLEG00000019644) #36	AK3 (ENSDLEG00000019654) #37	RCL1 (ENSDLEG00000019668)	JAK2 (ENSDLEG00000019680)	ENSDLEG00000019692
Vaquita	MODERN SPECIES	17	ENSPSNG00000015625	ENSPSNG00000015658	PIP5K1B (ENSPSNG00000015709) #7	PABIR1 (ENSPSNG00000016069) #8	TMEM252 (ENSPSNG00000016104) #10	PGM5 (ENSPSNG00000016170) #11	ENSPSNG00000016403 #13	ENSPSNG00000016463 #14	DOCK8 (ENSPSNG00000016745) #16	KANK1 (ENSPSNG00000018178) #17	DMRT1 (ENSPSNG00000018301) #19	DMRT3 (ENSPSNG00000018387) #20	DMRT2 (ENSPSNG00000018429) #21	ENSPSNG00000018606	ENSPSNG00000018632	SMARCA2 (ENSPSNG00000018802) #22	VLDLR (ENSPSNG00000019297) #25	KCNV2 (ENSPSNG00000019443) #26	PUM3 (ENSPSNG00000019496) #27	RFX3 (ENSPSNG00000019643) #29	GLIS3 (ENSPSNG00000019903) #32	SLC1A1 (ENSPSNG00000019992) #33	SPATA6L (ENSPSNG00000020084) #34	PLPP6 (ENSPSNG00000020203) #35	CDC37L1 (ENSPSNG00000020228) #36	AK3 (ENSPSNG00000020263) #37	RCL1 (ENSPSNG00000020330)	JAK2 (ENSPSNG00000020398)	ENSPSNG00000020509	PLGRKT (ENSPSNG00000020541)	ENSPSNG00000020589
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	925																ENSPCTG00005015514 #22
Sperm whale	MODERN SPECIES	20	ENSPCTG00005003835	FXN (ENSPCTG00005003847)	PIP5K1B (ENSPCTG00005003865) #7	FAM122A (ENSPCTG00005003904) #8	TMEM252 (ENSPCTG00005003909) #10	PGM5 (ENSPCTG00005003918) #11	ENSPCTG00005003942 #13	ENSPCTG00005004008 #14	DOCK8 (ENSPCTG00005004178) #16	KANK1 (ENSPCTG00005004438) #17	DMRT1 (ENSPCTG00005004498) #19	DMRT3 (ENSPCTG00005004535) #20	DMRT2 (ENSPCTG00005004572) #21	ENSPCTG00005004671	ENSPCTG00005004691	ENSPCTG00005004736 #22	VLDLR (ENSPCTG00005004995) #25	KCNV2 (ENSPCTG00005005193) #26	PUM3 (ENSPCTG00005005228) #27	ENSPCTG00005005299	RFX3 (ENSPCTG00005005359) #29	GLIS3 (ENSPCTG00005005407) #32	SLC1A1 (ENSPCTG00005005440) #33	SPATA6L (ENSPCTG00005005489) #34	PLPP6 (ENSPCTG00005005512) #35	CDC37L1 (ENSPCTG00005005531) #36	AK3 (ENSPCTG00005005584) #37	RCL1 (ENSPCTG00005005644)	JAK2 (ENSPCTG00005005720)	INSL6 (ENSPCTG00005005856)	ENSPCTG00005005885
Camelidae	ANCESTRAL SPECIES	5	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000169111	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a.f
Alpaca	MODERN SPECIES	2909																SMARCA2 (ENSVPAG00000001204) #22	VLDLR (ENSVPAG00000001205) #25
Arabian camel	MODERN SPECIES	30	ENTREP1 (ENSCDRG00005002279)	TJP2 (ENSCDRG00005002337)	FXN (ENSCDRG00005002495)	PIP5K1B (ENSCDRG00005002534) #7	PABIR1 (ENSCDRG00005002619) #8	TMEM252 (ENSCDRG00005002626) #10	PGM5 (ENSCDRG00005002644) #11	ENSCDRG00005002664 #13	ENSCDRG00005002760 #14	ENSCDRG00005003094	DOCK8 (ENSCDRG00005003115) #16	KANK1 (ENSCDRG00005003188) #17	DMRT1 (ENSCDRG00005003226) #19	DMRT3 (ENSCDRG00005003237) #20	DMRT2 (ENSCDRG00005003248) #21	ENSCDRG00005003352 #22	VLDLR (ENSCDRG00005003699) #25	KCNV2 (ENSCDRG00005003822) #26	PUM3 (ENSCDRG00005003846) #27	ENSCDRG00005003916	RFX3 (ENSCDRG00005004007) #29	GLIS3 (ENSCDRG00005004109) #32	SLC1A1 (ENSCDRG00005004192) #33	SPATA6L (ENSCDRG00005004284) #34	PLPP6 (ENSCDRG00005004350) #35	CDC37L1 (ENSCDRG00005004358) #36	AK3 (ENSCDRG00005004398) #37	RCL1 (ENSCDRG00005004458)	JAK2 (ENSCDRG00005004520)	INSL6 (ENSCDRG00005004548)	ENSCDRG00005004570
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Carnivora	ANCESTRAL SPECIES	25	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Caniformia	ANCESTRAL SPECIES	29	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000164995	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Canidae	ANCESTRAL SPECIES	47	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00990000204089	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120.lb.b #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Red fox	DUPLICATION
Red fox	MODERN SPECIES	37	ENSVVUG00000004075	APBA1 (ENSVVUG00000004105)	FAM189A2 (ENSVVUG00000004164)	ENSVVUG00000004192	TJP2 (ENSVVUG00000004207)	FXN (ENSVVUG00000004304)	PIP5K1B (ENSVVUG00000004306) #7	TMEM252 (ENSVVUG00000004338) #10	PGM5 (ENSVVUG00000004340) #11	ENSVVUG00000004359 #14	DOCK8 (ENSVVUG00000004407) #16	KANK1 (ENSVVUG00000004494) #17	DMRT1 (ENSVVUG00000004545) #19	DMRT3 (ENSVVUG00000004555) #20	DMRT2 (ENSVVUG00000004562) #21	ENSVVUG00000004580 #22	ENSVVUG00000004598 #22	VLDLR (ENSVVUG00000004925) #25	ENSVVUG00000006514 #24	KCNV2 (ENSVVUG00000006518) #26	PUM3 (ENSVVUG00000006527) #27	ENSVVUG00000006545	RFX3 (ENSVVUG00000006609) #29	GLIS3 (ENSVVUG00000007122) #32	SLC1A1 (ENSVVUG00000007200) #33	SPATA6L (ENSVVUG00000007223) #34	ENSVVUG00000007267 #35	CDC37L1 (ENSVVUG00000007275) #36	AK3 (ENSVVUG00000007282) #37	RCL1 (ENSVVUG00000007304)	JAK2 (ENSVVUG00000007315)
Red fox	MODERN SPECIES	37	APBA1 (ENSVVUG00000004105)	FAM189A2 (ENSVVUG00000004164)	ENSVVUG00000004192	TJP2 (ENSVVUG00000004207)	FXN (ENSVVUG00000004304)	PIP5K1B (ENSVVUG00000004306) #7	TMEM252 (ENSVVUG00000004338) #10	PGM5 (ENSVVUG00000004340) #11	ENSVVUG00000004359 #14	DOCK8 (ENSVVUG00000004407) #16	KANK1 (ENSVVUG00000004494) #17	DMRT1 (ENSVVUG00000004545) #19	DMRT3 (ENSVVUG00000004555) #20	DMRT2 (ENSVVUG00000004562) #21	ENSVVUG00000004580 #22	ENSVVUG00000004598 #22	VLDLR (ENSVVUG00000004925) #25	ENSVVUG00000006514 #24	KCNV2 (ENSVVUG00000006518) #26	PUM3 (ENSVVUG00000006527) #27	ENSVVUG00000006545	RFX3 (ENSVVUG00000006609) #29	GLIS3 (ENSVVUG00000007122) #32	SLC1A1 (ENSVVUG00000007200) #33	SPATA6L (ENSVVUG00000007223) #34	ENSVVUG00000007267 #35	CDC37L1 (ENSVVUG00000007275) #36	AK3 (ENSVVUG00000007282) #37	RCL1 (ENSVVUG00000007304)	JAK2 (ENSVVUG00000007315)	INSL6 (ENSVVUG00000007335)
Canis_lupus	ANCESTRAL SPECIES		ENSGT00990000204089	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00950000183030.m.a.b.a.a.a	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120.lb.b #37	ENSGT00530000063404.a	ENSGT01050000248397	ENSGT00940000155640
Dog	MODERN SPECIES		ENTREP1 (ENSCAFG00845000882)	ENSCAFG00845000920	TJP2 (ENSCAFG00845001062)	FXN (ENSCAFG00845001342)	PIP5K1B (ENSCAFG00845001394) #7	TMEM252 (ENSCAFG00845001485) #10	PGM5 (ENSCAFG00845001506) #11	ENSCAFG00845001539	ZNG1A (ENSCAFG00845001577) #14	DOCK8 (ENSCAFG00845001647) #16	KANK1 (ENSCAFG00845001908) #17	DMRT1 (ENSCAFG00845001983) #19	DMRT3 (ENSCAFG00845002003) #20	DMRT2 (ENSCAFG00845002026) #21	ENSCAFG00845002045	SMARCA2 (ENSCAFG00845002161) #22	VLDLR (ENSCAFG00845002345) #25	KCNV2 (ENSCAFG00845002424) #26	PUM3 (ENSCAFG00845002440) #27	ENSCAFG00845002474	RFX3 (ENSCAFG00845002562) #29	ENSCAFG00845002739	GLIS3 (ENSCAFG00845002759) #32	SLC1A1 (ENSCAFG00845002818) #33	SPATA6L (ENSCAFG00845002856) #34	PLPP6 (ENSCAFG00845002916) #35	CDC37L1 (ENSCAFG00845015553) #36	ENSCAFG00845015626 #37	ENSCAFG00845015667	JAK2 (ENSCAFG00845015728)	ENSCAFG00845015836
Dingo	DUPLICATION
Dingo	MODERN SPECIES	125	ENSCAFG00020026606	PIP5K1B (ENSCAFG00020026608) #7	PABIR1 (ENSCAFG00020026613) #8	TMEM252 (ENSCAFG00020026616) #10	PGM5 (ENSCAFG00020026619) #11	ENSCAFG00020026621	ENSCAFG00020026623 #14	ENSCAFG00020026625	ENSCAFG00020026627 #15	DOCK8 (ENSCAFG00020026637) #16	KANK1 (ENSCAFG00020026742) #17	DMRT1 (ENSCAFG00020026750) #19	DMRT3 (ENSCAFG00020026752) #20	DMRT2 (ENSCAFG00020026753) #21	ENSCAFG00020026759	ENSCAFG00020026766 #22	ENSCAFG00020026802 #22	ENSCAFG00020026863 #24	VLDLR (ENSCAFG00020026865) #25	KCNV2 (ENSCAFG00020026866) #26	PUM3 (ENSCAFG00020026867) #27	RFX3 (ENSCAFG00020026868) #29	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104) #32	SLC1A1 (ENSCAFG00020000361) #33	SPATA6L (ENSCAFG00020000384) #34	PLPP6 (ENSCAFG00020000503) #35	CDC37L1 (ENSCAFG00020000516) #36	ENSCAFG00020000594 #37	ENSCAFG00020000622	RCL1 (ENSCAFG00020000638)
Dingo	MODERN SPECIES	125	PIP5K1B (ENSCAFG00020026608) #7	PABIR1 (ENSCAFG00020026613) #8	TMEM252 (ENSCAFG00020026616) #10	PGM5 (ENSCAFG00020026619) #11	ENSCAFG00020026621	ENSCAFG00020026623 #14	ENSCAFG00020026625	ENSCAFG00020026627 #15	DOCK8 (ENSCAFG00020026637) #16	KANK1 (ENSCAFG00020026742) #17	DMRT1 (ENSCAFG00020026750) #19	DMRT3 (ENSCAFG00020026752) #20	DMRT2 (ENSCAFG00020026753) #21	ENSCAFG00020026759	ENSCAFG00020026766 #22	ENSCAFG00020026802 #22	ENSCAFG00020026863 #24	VLDLR (ENSCAFG00020026865) #25	KCNV2 (ENSCAFG00020026866) #26	PUM3 (ENSCAFG00020026867) #27	RFX3 (ENSCAFG00020026868) #29	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104) #32	SLC1A1 (ENSCAFG00020000361) #33	SPATA6L (ENSCAFG00020000384) #34	PLPP6 (ENSCAFG00020000503) #35	CDC37L1 (ENSCAFG00020000516) #36	ENSCAFG00020000594 #37	ENSCAFG00020000622	RCL1 (ENSCAFG00020000638)	ENSCAFG00020000655
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Mustelinae	ANCESTRAL SPECIES	87	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000160907 #35	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a
American mink	MODERN SPECIES	72	APBA1 (ENSNVIG00000010432)	ENTREP1 (ENSNVIG00000010390)	TJP2 (ENSNVIG00000009677)	ENSNVIG00000009630	FXN (ENSNVIG00000009610)	PIP5K1B (ENSNVIG00000009548) #7	CI071 (ENSNVIG00000009508) #10	PGM5 (ENSNVIG00000009442) #11	ENSNVIG00000009420 #13	ENSNVIG00000008929	DOCK8 (ENSNVIG00000008726) #16	KANK1 (ENSNVIG00000008630) #17	DMRT1 (ENSNVIG00000008608) #19	DMRT3 (ENSNVIG00000008601) #20	DMRT2 (ENSNVIG00000008589) #21	SMARCA2 (ENSNVIG00000008097) #22	VLDLR (ENSNVIG00000008014) #25	KCNV2 (ENSNVIG00000007991) #26	K0020 (ENSNVIG00000007919) #27	RFX3 (ENSNVIG00000007796) #29
Ferret	MODERN SPECIES	281										ENSMPUG00000005707	DOCK8 (ENSMPUG00000005223) #16	KANK1 (ENSMPUG00000005216) #17	DMRT1 (ENSMPUG00000005204) #19	DMRT2 (ENSMPUG00000005199) #21	ENSMPUG00000005192	SMARCA2 (ENSMPUG00000005171) #22	ENSMPUG00000005169	VLDLR (ENSMPUG00000005155) #25	KCNV2 (ENSMPUG00000005137) #26	PUM3 (ENSMPUG00000005125) #27	ENSMPUG00000005120	RFX3 (ENSMPUG00000005101) #29	GLIS3 (ENSMPUG00000005095) #32	SLC1A1 (ENSMPUG00000005081) #33	SPATA6L (ENSMPUG00000005024) #34	CDC37L1 (ENSMPUG00000005018) #36	AK3 (ENSMPUG00000005006) #37	RCL1 (ENSMPUG00000004998)	JAK2 (ENSMPUG00000004974)	INSL6 (ENSMPUG00000004968)	ENSMPUG00000004961
Ursidae	ANCESTRAL SPECIES	43	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a
Giant Panda	MODERN SPECIES	8	PTAR1 (ENSAMEG00000007011)	APBA1 (ENSAMEG00000006989)	ENTREP1 (ENSAMEG00000006981)	TJP2 (ENSAMEG00000006921)	ENSAMEG00000006915	PIP5K1B (ENSAMEG00000008089) #7	TMEM252 (ENSAMEG00000008083) #10	PGM5 (ENSAMEG00000008064) #11	ENSAMEG00000025926 #13	ENSAMEG00000006824 #14	DOCK8 (ENSAMEG00000006698) #16	KANK1 (ENSAMEG00000006667) #17	DMRT3 (ENSAMEG00000006664) #20	DMRT2 (ENSAMEG00000006648) #21	ENSAMEG00000019747	SMARCA2 (ENSAMEG00000012325) #22	ENSAMEG00000027822 #24	VLDLR (ENSAMEG00000012233) #25	KCNV2 (ENSAMEG00000012228) #26	PUM3 (ENSAMEG00000012187) #27	ENSAMEG00000012183	RFX3 (ENSAMEG00000012132) #29	GLIS3 (ENSAMEG00000002733) #32	SLC1A1 (ENSAMEG00000002682) #33	ENSAMEG00000002674 #34	CDC37L1 (ENSAMEG00000002657) #36	AK3 (ENSAMEG00000002640) #37	RCL1 (ENSAMEG00000002631)	JAK2 (ENSAMEG00000009661)	INSL6 (ENSAMEG00000009778)	ENSAMEG00000009780
Ursus	ANCESTRAL SPECIES	50	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT00940000166172	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120.hb.a #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	171	CFAP95 (ENSUMAG00000021672)	PTAR1 (ENSUMAG00000021667)	APBA1 (ENSUMAG00000021636)	ENTREP1 (ENSUMAG00000021620)	TJP2 (ENSUMAG00000020541)	ENSUMAG00000020328	PIP5K1B (ENSUMAG00000020312) #7	PABIR1 (ENSUMAG00000020302) #8	TMEM252 (ENSUMAG00000020280) #10	PGM5 (ENSUMAG00000020142) #11	ENSUMAG00000020081 #14	DOCK8 (ENSUMAG00000019524) #16	KANK1 (ENSUMAG00000019362) #17	ENSUMAG00000019350 #19	DMRT2 (ENSUMAG00000019339) #21	ENSUMAG00000019328 #22	ENSUMAG00000019303 #22	VLDLR (ENSUMAG00000018747) #25	KCNV2 (ENSUMAG00000018690) #26	PUM3 (ENSUMAG00000018443) #27	ENSUMAG00000018187	ENSUMAG00000018118	RFX3 (ENSUMAG00000018101) #29	GLIS3 (ENSUMAG00000018031) #32	SLC1A1 (ENSUMAG00000017970) #33	ENSUMAG00000017954 #35	SPATA6L (ENSUMAG00000017942) #34	CDC37L1 (ENSUMAG00000017926) #36	ENSUMAG00000017904 #37	RCL1 (ENSUMAG00000017890)	JAK2 (ENSUMAG00000016820)
Polar bear	MODERN SPECIES	171	PTAR1 (ENSUMAG00000021667)	APBA1 (ENSUMAG00000021636)	ENTREP1 (ENSUMAG00000021620)	TJP2 (ENSUMAG00000020541)	ENSUMAG00000020328	PIP5K1B (ENSUMAG00000020312) #7	PABIR1 (ENSUMAG00000020302) #8	TMEM252 (ENSUMAG00000020280) #10	PGM5 (ENSUMAG00000020142) #11	ENSUMAG00000020081 #14	DOCK8 (ENSUMAG00000019524) #16	KANK1 (ENSUMAG00000019362) #17	ENSUMAG00000019350 #19	DMRT2 (ENSUMAG00000019339) #21	ENSUMAG00000019328 #22	ENSUMAG00000019303 #22	VLDLR (ENSUMAG00000018747) #25	KCNV2 (ENSUMAG00000018690) #26	PUM3 (ENSUMAG00000018443) #27	ENSUMAG00000018187	ENSUMAG00000018118	RFX3 (ENSUMAG00000018101) #29	GLIS3 (ENSUMAG00000018031) #32	SLC1A1 (ENSUMAG00000017970) #33	ENSUMAG00000017954 #35	SPATA6L (ENSUMAG00000017942) #34	CDC37L1 (ENSUMAG00000017926) #36	ENSUMAG00000017904 #37	RCL1 (ENSUMAG00000017890)	JAK2 (ENSUMAG00000016820)	INSL6 (ENSUMAG00000016724)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1533																SMARCA2 (ENSUAMG00000024701) #22
American black bear	MODERN SPECIES	2359																ENSUAMG00000008012 #22
Felidae	ANCESTRAL SPECIES	28	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Cat	MODERN SPECIES	244	ENTREP1 (ENSFCAG00000014622)	TJP2 (ENSFCAG00000008814)	FXN (ENSFCAG00000031454)	PIP5K1B (ENSFCAG00000008812) #7	ENSFCAG00000050603	TMEM252 (ENSFCAG00000008053) #10	PGM5 (ENSFCAG00000008050) #11	ENSFCAG00000043244 #13	ENSFCAG00000012045 #14	ENSFCAG00000047266 #15	DOCK8 (ENSFCAG00000012046) #16	KANK1 (ENSFCAG00000006458) #17	DMRT1 (ENSFCAG00000006459) #19	DMRT3 (ENSFCAG00000036847) #20	DMRT2 (ENSFCAG00000006461) #21	SMARCA2 (ENSFCAG00000001568) #22	ENSFCAG00000041218 #24	VLDLR (ENSFCAG00000013257) #25	KCNV2 (ENSFCAG00000004335) #26	ENSFCAG00000013260	RFX3 (ENSFCAG00000012950) #29	GLIS3 (ENSFCAG00000046401) #32	ENSFCAG00000037557	SLC1A1 (ENSFCAG00000023590) #33	PLPP6 (ENSFCAG00000038113) #35	SPATA6L (ENSFCAG00000002369) #34	CDC37L1 (ENSFCAG00000027076) #36	AK3 (ENSFCAG00000028063) #37	RCL1 (ENSFCAG00000014557)	JAK2 (ENSFCAG00000028588)	INSL6 (ENSFCAG00000044599)
Panthera	ANCESTRAL SPECIES	34	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
leopard	MODERN SPECIES	42	APBA1 (ENSPPRG00000007808)	ENTREP1 (ENSPPRG00000007577)	TJP2 (ENSPPRG00000007262)	FXN (ENSPPRG00000006297)	PIP5K1B (ENSPPRG00000006228) #7	ENSPPRG00000005893	TMEM252 (ENSPPRG00000005826) #10	PGM5 (ENSPPRG00000005783) #11	ENSPPRG00000005661 #13	ENSPPRG00000005315 #14	DOCK8 (ENSPPRG00000003143) #16	KANK1 (ENSPPRG00000002516) #17	DMRT1 (ENSPPRG00000002380) #19	DMRT3 (ENSPPRG00000002367) #20	DMRT2 (ENSPPRG00000002109) #21	SMARCA2 (ENSPPRG00000001879) #22	ENSPPRG00000001027 #24	VLDLR (ENSPPRG00000000915) #25	KCNV2 (ENSPPRG00000000862) #26	PUM3 (ENSPPRG00000000809) #27	ENSPPRG00000000748	RFX3 (ENSPPRG00000000606) #29	GLIS3 (ENSPPRG00000000400) #32	SLC1A1 (ENSPPRG00000000232) #33	SPATA6L (ENSPPRG00000000218) #34	PLPP6 (ENSPPRG00000019670) #35	CDC37L1 (ENSPPRG00000000059) #36	AK3 (ENSPPRG00000000041) #37	RCL1 (ENSPPRG00000022645)	JAK2 (ENSPPRG00000022744)	INSL6 (ENSPPRG00000022777)
lion	MODERN SPECIES	13	PTAR1 (ENSPLOG00000013055)	APBA1 (ENSPLOG00000013238)	ENTREP1 (ENSPLOG00000013369)	TJP2 (ENSPLOG00000013563)	FXN (ENSPLOG00000013999)	PIP5K1B (ENSPLOG00000014086) #7	TMEM252 (ENSPLOG00000014372) #10	PGM5 (ENSPLOG00000014414) #11	ENSPLOG00000014655 #13	ENSPLOG00000014827 #14	DOCK8 (ENSPLOG00000015754) #16	KANK1 (ENSPLOG00000016894) #17	DMRT1 (ENSPLOG00000017065) #19	DMRT3 (ENSPLOG00000017150) #20	DMRT2 (ENSPLOG00000017190) #21	SMARCA2 (ENSPLOG00000017478) #22	ENSPLOG00000017911 #24	VLDLR (ENSPLOG00000017962) #25	KCNV2 (ENSPLOG00000018027) #26	PUM3 (ENSPLOG00000018076) #27	ENSPLOG00000018220	RFX3 (ENSPLOG00000018336) #29	GLIS3 (ENSPLOG00000018479) #32	SLC1A1 (ENSPLOG00000018538) #33	SPATA6L (ENSPLOG00000018652) #34	PLPP6 (ENSPLOG00000018812) #35	CDC37L1 (ENSPLOG00000018840) #36	AK3 (ENSPLOG00000018913) #37	RCL1 (ENSPLOG00000019004)	JAK2 (ENSPLOG00000019062)	INSL6 (ENSPLOG00000019128)
Tiger	DUPLICATION
Tiger	MODERN SPECIES	463																ENSPTIG00000015817 #22	ENSPTIG00000010794 #22	ENSPTIG00000009737 #24	VLDLR (ENSPTIG00000005593) #25	PUM3 (ENSPTIG00000021934) #27	ENSPTIG00000021167	RFX3 (ENSPTIG00000017617) #29	GLIS3 (ENSPTIG00000015969) #32	ENSPTIG00000014983	SLC1A1 (ENSPTIG00000013599) #33	SPATA6L (ENSPTIG00000011794) #34	CDC37L1 (ENSPTIG00000008469) #36	AK3 (ENSPTIG00000000703) #37	RCL1 (ENSPTIG00000019031)	JAK2 (ENSPTIG00000016939)	INSL6 (ENSPTIG00000016722)
Tiger	MODERN SPECIES	463															ENSPTIG00000015817 #22	ENSPTIG00000010794 #22	ENSPTIG00000009737 #24	VLDLR (ENSPTIG00000005593) #25	PUM3 (ENSPTIG00000021934) #27	ENSPTIG00000021167	RFX3 (ENSPTIG00000017617) #29	GLIS3 (ENSPTIG00000015969) #32	ENSPTIG00000014983	SLC1A1 (ENSPTIG00000013599) #33	SPATA6L (ENSPTIG00000011794) #34	CDC37L1 (ENSPTIG00000008469) #36	AK3 (ENSPTIG00000000703) #37	RCL1 (ENSPTIG00000019031)	JAK2 (ENSPTIG00000016939)	INSL6 (ENSPTIG00000016722)	ENSPTIG00000016439
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Equus	ANCESTRAL SPECIES	37	ENSGT00940000158634	ENSGT00390000005811.m	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00410000028750 #15	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00520000061590 #24	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Horse	DUPLICATION
Horse	MODERN SPECIES	15	TJP2 (ENSECAG00000016742)	FXN (ENSECAG00000019174)	PIP5K1B (ENSECAG00000019992) #7	PABIR1 (ENSECAG00000003116) #8	ENSECAG00000044520	PGM5 (ENSECAG00000010805) #11	TMEM252 (ENSECAG00000010049) #10	ENSECAG00000003227 #13	ENSECAG00000014036 #14	ENSECAG00000041352 #15	DOCK8 (ENSECAG00000011917) #16	KANK1 (ENSECAG00000016219) #17	DMRT1 (ENSECAG00000060160) #19	DMRT3 (ENSECAG00000023412) #20	DMRT2 (ENSECAG00000035701) #21	ENSECAG00000047891 #22	ENSECAG00000045647 #22	VLDLR (ENSECAG00000021859) #25	ENSECAG00000037169 #24	KCNV2 (ENSECAG00000016602) #26	PUM3 (ENSECAG00000017193) #27	ENSECAG00000009736	RFX3 (ENSECAG00000011075) #29	GLIS3 (ENSECAG00000020544) #32	SLC1A1 (ENSECAG00000010935) #33	SPATA6L (ENSECAG00000021902) #34	PLPP6 (ENSECAG00000023969) #35	CDC37L1 (ENSECAG00000000269) #36	AK3 (ENSECAG00000011235) #37	ENSECAG00000058759	RCL1 (ENSECAG00000015973)
Horse	MODERN SPECIES	15	FXN (ENSECAG00000019174)	PIP5K1B (ENSECAG00000019992) #7	PABIR1 (ENSECAG00000003116) #8	ENSECAG00000044520	PGM5 (ENSECAG00000010805) #11	TMEM252 (ENSECAG00000010049) #10	ENSECAG00000003227 #13	ENSECAG00000014036 #14	ENSECAG00000041352 #15	DOCK8 (ENSECAG00000011917) #16	KANK1 (ENSECAG00000016219) #17	DMRT1 (ENSECAG00000060160) #19	DMRT3 (ENSECAG00000023412) #20	DMRT2 (ENSECAG00000035701) #21	ENSECAG00000047891 #22	ENSECAG00000045647 #22	VLDLR (ENSECAG00000021859) #25	ENSECAG00000037169 #24	KCNV2 (ENSECAG00000016602) #26	PUM3 (ENSECAG00000017193) #27	ENSECAG00000009736	RFX3 (ENSECAG00000011075) #29	GLIS3 (ENSECAG00000020544) #32	SLC1A1 (ENSECAG00000010935) #33	SPATA6L (ENSECAG00000021902) #34	PLPP6 (ENSECAG00000023969) #35	CDC37L1 (ENSECAG00000000269) #36	AK3 (ENSECAG00000011235) #37	ENSECAG00000058759	RCL1 (ENSECAG00000015973)	JAK2 (ENSECAG00000009119)
Donkey	DUPLICATION
Donkey	MODERN SPECIES	15	APBA1 (ENSEASG00005009603)	ENTREP1 (ENSEASG00005009605)	TJP2 (ENSEASG00005009607)	FXN (ENSEASG00005025449)	PIP5K1B (ENSEASG00005009622) #7	TMEM252 (ENSEASG00005032638) #10	PGM5 (ENSEASG00005009626) #11	ENSEASG00005009631 #13	ENSEASG00005009634 #14	DOCK8 (ENSEASG00005009734) #16	KANK1 (ENSEASG00005010292) #17	DMRT1 (ENSEASG00005010297) #19	DMRT3 (ENSEASG00005010303) #20	DMRT2 (ENSEASG00005010307) #21	ENSEASG00005032228 #22	ENSEASG00005033232 #22	ENSEASG00005010323 #24	VLDLR (ENSEASG00005010330) #25	KCNV2 (ENSEASG00005010348) #26	PUM3 (ENSEASG00005010350) #27	ENSEASG00005010361	ENSEASG00005010358	RFX3 (ENSEASG00005010402) #29	GLIS3 (ENSEASG00005010634) #32	SLC1A1 (ENSEASG00005010637) #33	PLPP6 (ENSEASG00005010645) #35	SPATA6L (ENSEASG00005010642) #34	CDC37L1 (ENSEASG00005010646) #36	AK3 (ENSEASG00005010651) #37	RCL1 (ENSEASG00005010653)	JAK2 (ENSEASG00005010656)
Donkey	MODERN SPECIES	15	ENSEASG00005024635	APBA1 (ENSEASG00005009603)	ENTREP1 (ENSEASG00005009605)	TJP2 (ENSEASG00005009607)	FXN (ENSEASG00005025449)	PIP5K1B (ENSEASG00005009622) #7	TMEM252 (ENSEASG00005032638) #10	PGM5 (ENSEASG00005009626) #11	ENSEASG00005009631 #13	ENSEASG00005009634 #14	DOCK8 (ENSEASG00005009734) #16	KANK1 (ENSEASG00005010292) #17	DMRT1 (ENSEASG00005010297) #19	DMRT3 (ENSEASG00005010303) #20	DMRT2 (ENSEASG00005010307) #21	ENSEASG00005032228 #22	ENSEASG00005033232 #22	ENSEASG00005010323 #24	VLDLR (ENSEASG00005010330) #25	KCNV2 (ENSEASG00005010348) #26	PUM3 (ENSEASG00005010350) #27	ENSEASG00005010361	ENSEASG00005010358	RFX3 (ENSEASG00005010402) #29	GLIS3 (ENSEASG00005010634) #32	SLC1A1 (ENSEASG00005010637) #33	PLPP6 (ENSEASG00005010645) #35	SPATA6L (ENSEASG00005010642) #34	CDC37L1 (ENSEASG00005010646) #36	AK3 (ENSEASG00005010651) #37	RCL1 (ENSEASG00005010653)
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a
Megabat	MODERN SPECIES	3455																SMARCA2 (ENSPVAG00000000901) #22
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00390000017892	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00940000156639 #7	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a
Microbat	MODERN SPECIES	1067																SMARCA2 (ENSMLUG00000002342) #22	VLDLR (ENSMLUG00000002294) #25	KCNV2 (ENSMLUG00000002304) #26	PUM3 (ENSMLUG00000002309) #27	ENSMLUG00000022735	RFX3 (ENSMLUG00000013765) #29	ENSMLUG00000030513 #32	ENSMLUG00000014482 #32	ENSMLUG00000012988 #33	SPATA6L (ENSMLUG00000012996) #34	PLPP6 (ENSMLUG00000017269) #35	CDC37L1 (ENSMLUG00000017270) #36	AK3 (ENSMLUG00000017272) #37	RCL1 (ENSMLUG00000009654)	JAK2 (ENSMLUG00000012756)	INSL6 (ENSMLUG00000007982)
Greater horseshoe bat	MODERN SPECIES	3	CFAP95 (ENSRFEG00010007629)	PTAR1 (ENSRFEG00010007537)	APBA1 (ENSRFEG00010007458)	ENTREP1 (ENSRFEG00010007317)	TJP2 (ENSRFEG00010007216)	PIP5K1B (ENSRFEG00010006963) #7	TMEM252 (ENSRFEG00010006856) #10	PGM5 (ENSRFEG00010006806) #11	ENSRFEG00010006757 #13	ENSRFEG00010006573 #14	DOCK8 (ENSRFEG00010006288) #16	KANK1 (ENSRFEG00010006153) #17	DMRT1 (ENSRFEG00010006049) #19	DMRT3 (ENSRFEG00010006020) #20	DMRT2 (ENSRFEG00010005950) #21	SMARCA2 (ENSRFEG00010005719) #22	VLDLR (ENSRFEG00010005438) #25	KCNV2 (ENSRFEG00010005355) #26	ENSRFEG00010005315 #27	ENSRFEG00010005258	RFX3 (ENSRFEG00010005210) #29	GLIS3 (ENSRFEG00010005187) #32	SLC1A1 (ENSRFEG00010005159) #33	ENSRFEG00010005145	PLPP6 (ENSRFEG00010005138) #35	SPATA6L (ENSRFEG00010005120) #34	CDC37L1 (ENSRFEG00010015324) #36	AK3 (ENSRFEG00010015150) #37	RCL1 (ENSRFEG00010015039)	JAK2 (ENSRFEG00010014972)	INSL6 (ENSRFEG00010014917)
Atlantogenata	ANCESTRAL SPECIES	68			ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a
Afrotheria	ANCESTRAL SPECIES	145					ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896.n #32	ENSGT00940000156896.m #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Afrotheria_a	ANCESTRAL SPECIES	145					ENSGT00940000156639 #7	ENSGT01050000248464	ENSGT00390000015476.d.b #8	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896.n #32	ENSGT00940000156896.m #32	ENSGT00900000143153	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b
Elephant	MODERN SPECIES	593	ENSLAFG00000030532	ENSLAFG00000031361	PIP5K1B (ENSLAFG00000007792) #7	ENSLAFG00000027844	PABIR1 (ENSLAFG00000016843) #8	ENSLAFG00000029981	TMEM252 (ENSLAFG00000015792) #10	PGM5 (ENSLAFG00000015785) #11	ENSLAFG00000006679 #14	DOCK8 (ENSLAFG00000010626) #16	ENSLAFG00000010633 #17	ENSLAFG00000031278 #17	ENSLAFG00000010638 #19	DMRT3 (ENSLAFG00000028125) #20	DMRT2 (ENSLAFG00000008510) #21	SMARCA2 (ENSLAFG00000014061) #22	VLDLR (ENSLAFG00000015211) #25	KCNV2 (ENSLAFG00000017292) #26	PUM3 (ENSLAFG00000017341) #27	RFX3 (ENSLAFG00000021602) #29	ENSLAFG00000031654 #32	ENSLAFG00000029971 #32	ENSLAFG00000026125	SLC1A1 (ENSLAFG00000001120) #33	PLPP6 (ENSLAFG00000001123) #35	SPATA6L (ENSLAFG00000001121) #34	CDC37L1 (ENSLAFG00000001125) #36	AK3 (ENSLAFG00000001126) #37	RCL1 (ENSLAFG00000017495)	JAK2 (ENSLAFG00000007471)	INSL6 (ENSLAFG00000007479)
Hyrax	MODERN SPECIES	7507																SMARCA2 (ENSPCAG00000016969) #22
Tenrec	MODERN SPECIES	8467																ENSETEG00000003898 #22
Xenarthra	ANCESTRAL SPECIES	76																ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00940000160907 #35	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434.b	ENSGT00940000154434.a	ENSGT00390000000375
Armadillo	MODERN SPECIES	1454														ST8SIA4 (ENSDNOG00000046147)	ENSDNOG00000040306	SMARCA2 (ENSDNOG00000006402) #22	VLDLR (ENSDNOG00000001086) #25	KCNV2 (ENSDNOG00000041737) #26	PUM3 (ENSDNOG00000008157) #27	RFX3 (ENSDNOG00000018668) #29	ENSDNOG00000012636 #32	ENSDNOG00000042655	ENSDNOG00000035748 #32	ENSDNOG00000042157	SLC1A1 (ENSDNOG00000001798) #33	SPATA6L (ENSDNOG00000038916) #34	PLPP6 (ENSDNOG00000015974) #35	CDC37L1 (ENSDNOG00000015975) #36	AK3 (ENSDNOG00000038787) #37	RCL1 (ENSDNOG00000019911)	JAK2 (ENSDNOG00000008173)
Sloth	MODERN SPECIES	7973																SMARCA2 (ENSCHOG00000004316) #22
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00940000154259	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b	ENSGT00390000000111.b.b	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b	ENSGT00390000000111.b.b	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088
Diprotodontia	ANCESTRAL SPECIES	21	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b	ENSGT00390000000111.b.b	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088
Diprotodontia_a	ANCESTRAL SPECIES	17	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811.a	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000163353 #13	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b	ENSGT00390000000111.b.b	ENSGT00390000002393	ENSGT00440000038745.b	ENSGT00730000111088
koala	MODERN SPECIES	92	ENTREP1 (ENSPCIG00000030326)	TJP2 (ENSPCIG00000030318)	ENSPCIG00000030316	PIP5K1B (ENSPCIG00000030314) #7	ENSPCIG00000030312 #10	PGM5 (ENSPCIG00000030310) #11	ENSPCIG00000030308 #14	ENSPCIG00000031430	ENSPCIG00000035585 #16	ENSPCIG00000030200 #16	KANK1 (ENSPCIG00000030084) #17	ENSPCIG00000030081	DMRT1 (ENSPCIG00000030080) #19	DMRT3 (ENSPCIG00000030078) #20	DMRT2 (ENSPCIG00000030077) #21	SMARCA2 (ENSPCIG00000015658) #22	ENSPCIG00000015665	VLDLR (ENSPCIG00000010606) #25	KCNV2 (ENSPCIG00000010599) #26	ENSPCIG00000010598	ENSPCIG00000032183	SVEP1 (ENSPCIG00000015236)	MUSK (ENSPCIG00000015083)	LPAR1 (ENSPCIG00000015072)	SMC2 (ENSPCIG00000026558)	ABCC1 (ENSPCIG00000016945)	ENSPCIG00000016944	MYH11 (ENSPCIG00000016933)	NDE1 (ENSPCIG00000016924)	MARF1 (ENSPCIG00000016908)	BMERB1 (ENSPCIG00000016906)
Common wonbat	MODERN SPECIES	1066	APBA1 (ENSVURG00010007265)	ENTREP1 (ENSVURG00010007290)	TJP2 (ENSVURG00010007350)	ENSVURG00010007444	PIP5K1B (ENSVURG00010007456) #7	ENSVURG00010007484 #10	PGM5 (ENSVURG00010007494) #11	ENSVURG00010007501 #13	ENSVURG00010007512 #14	DOCK8 (ENSVURG00010007566) #16	KANK1 (ENSVURG00010007648) #17	DMRT1 (ENSVURG00010007673) #19	DMRT3 (ENSVURG00010007680) #20	ENSVURG00010007684	DMRT2 (ENSVURG00010007688) #21	SMARCA2 (ENSVURG00010007727) #22	VLDLR (ENSVURG00010008117) #25	ENSVURG00010008151 #26	ENSVURG00010008158	ENSVURG00010008167	SVEP1 (ENSVURG00010008182)	MUSK (ENSVURG00010008274)	LPAR1 (ENSVURG00010008572)	SMC2 (ENSVURG00010008589)	ENSVURG00010008619	ENSVURG00010008671	MYH11 (ENSVURG00010008696)	NDE1 (ENSVURG00010008816)	MARF1 (ENSVURG00010008830)	BMERB1 (ENSVURG00010008875)	ENSVURG00010008879
Wallaby	MODERN SPECIES	352																SMARCA2 (ENSMEUG00000009812) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000001209	ENSSHAG00000001019	ENSSHAG00000006135	ENSSHAG00000023898	ENSSHAG00000001482	ENSSHAG00000031308	NFIL3 (ENSSHAG00000030770)	ENSSHAG00000025064	ENSSHAG00000001579	ENSSHAG00000029291 #14	ENSSHAG00000000407 #16	ENSSHAG00000005856 #17	DMRT1 (ENSSHAG00000006920) #19	DMRT3 (ENSSHAG00000008620) #20	DMRT2 (ENSSHAG00000009329) #21	SMARCA2 (ENSSHAG00000007884) #22	VLDLR (ENSSHAG00000001123) #25	ENSSHAG00000025886 #26	ENSSHAG00000006739	ENSSHAG00000023521	SVEP1 (ENSSHAG00000027165)	MUSK (ENSSHAG00000001254)	ENSSHAG00000005546	ENSSHAG00000004265	ENSSHAG00000005536	MYH11 (ENSSHAG00000007381)	NDE1 (ENSSHAG00000008432)	MARF1 (ENSSHAG00000008782)	BMERB1 (ENSSHAG00000029806)	ENSSHAG00000029566	ENSSHAG00000010677
Opossum	MODERN SPECIES	5	PIP5K1B (ENSMODG00000003063) #7	TMEM252 (ENSMODG00000003092) #10	PGM5 (ENSMODG00000003131) #11	ENSMODG00000024854	ENSMODG00000044468 #13	ENSMODG00000039961	ENSMODG00000044962 #16	ENSMODG00000045417 #16	ENSMODG00000003306 #16	KANK1 (ENSMODG00000003387) #17	DMRT1 (ENSMODG00000003401) #19	DMRT3 (ENSMODG00000003407) #20	DMRT2 (ENSMODG00000003430) #21	ENSMODG00000024673	ENSMODG00000024839	SMARCA2 (ENSMODG00000003578) #22	ENSMODG00000041801	VLDLR (ENSMODG00000003620) #25	KCNV2 (ENSMODG00000003631) #26	ENSMODG00000049910	ENSMODG00000003635	SVEP1 (ENSMODG00000003939)	MUSK (ENSMODG00000003983)	LPAR1 (ENSMODG00000003999)	ENSMODG00000048116	SMC2 (ENSMODG00000004036)	ABCC1 (ENSMODG00000004194)	ENSMODG00000040466	ENSMODG00000024730	ENSMODG00000004204	MYH11 (ENSMODG00000004360)
Platypus	MODERN SPECIES	88	PTAR1 (ENSOANG00000005028)	APBA1 (ENSOANG00000002093)	ENTREP1 (ENSOANG00000003151)	TJP2 (ENSOANG00000013266)	PIP5K1B (ENSOANG00000013264) #7	ENSOANG00000028420 #10	PGM5 (ENSOANG00000012517) #11	ENSOANG00000040009 #13	ENSOANG00000012519 #14	DOCK8 (ENSOANG00000044143) #16	KANK1 (ENSOANG00000008293) #17	DMRT1 (ENSOANG00000036834) #19	DMRT3 (ENSOANG00000008295) #20	DMRT2 (ENSOANG00000008296) #21	ENSOANG00000008297	SMARCA2 (ENSOANG00000008299) #22	VLDLR (ENSOANG00000014993) #25	KCNV2 (ENSOANG00000014994) #26	PUM3 (ENSOANG00000014995) #27	ENSOANG00000043031	RFX3 (ENSOANG00000014996) #29	GLIS3 (ENSOANG00000014997) #32	SLC1A1 (ENSOANG00000013192) #33	ENSOANG00000039420 #35	ENSOANG00000036739 #34	CDC37L1 (ENSOANG00000001511) #36	ENSOANG00000049559	AK3 (ENSOANG00000001505) #37	RCL1 (ENSOANG00000013193)	JAK2 (ENSOANG00000010092)	ENSOANG00000031851
Sauria	ANCESTRAL SPECIES	5	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373
Elapidae_a	ANCESTRAL SPECIES	101													ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876.m #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Mainland tiger snake	MODERN SPECIES	1	PTAR1 (ENSNSUG00000017852)	APBA1 (ENSNSUG00000017853)	ENTREP1 (ENSNSUG00000017854)	ENSNSUG00000017855	FXN (ENSNSUG00000018034)	PIP5K1B (ENSNSUG00000018035) #7	TMEM252 (ENSNSUG00000018038) #10	PGM5 (ENSNSUG00000018044) #11	ENSNSUG00000018047	ENSNSUG00000018048	DOCK8 (ENSNSUG00000018049) #16	KANK1 (ENSNSUG00000018050) #17	DMRT1 (ENSNSUG00000018051) #19	DMRT3 (ENSNSUG00000018056) #20	DMRT2 (ENSNSUG00000018057) #21	SMARCA2 (ENSNSUG00000018108) #22	VLDLR (ENSNSUG00000019901) #25	KCNV2 (ENSNSUG00000019916) #26	PUM3 (ENSNSUG00000019917) #27	ENSNSUG00000019918	RFX3 (ENSNSUG00000019919) #29	GLIS3 (ENSNSUG00000019925) #32	SLC1A1 (ENSNSUG00000019926) #33	SPATA6L (ENSNSUG00000019928) #34	CDC37L1 (ENSNSUG00000019929) #36	AK3 (ENSNSUG00000019930) #37	ENSNSUG00000019931	ENSNSUG00000019932	JAK2 (ENSNSUG00000019934)	PLGRKT (ENSNSUG00000019935)	PDCD1LG2 (ENSNSUG00000019936)
Eastern brown snake	MODERN SPECIES	23	PTAR1 (ENSPTXG00000019202)	APBA1 (ENSPTXG00000019201)	ENTREP1 (ENSPTXG00000019200)	ENSPTXG00000018866	FXN (ENSPTXG00000018865)	PIP5K1B (ENSPTXG00000018864) #7	TMEM252 (ENSPTXG00000018863) #10	PGM5 (ENSPTXG00000018862) #11	ENSPTXG00000018861	ENSPTXG00000018860 #14	DOCK8 (ENSPTXG00000018810) #16	KANK1 (ENSPTXG00000018808) #17	DMRT1 (ENSPTXG00000018807) #19	DMRT3 (ENSPTXG00000018806) #20	DMRT2 (ENSPTXG00000018805) #21	SMARCA2 (ENSPTXG00000018801) #22	VLDLR (ENSPTXG00000018796) #25	KCNV2 (ENSPTXG00000018795) #26	PUM3 (ENSPTXG00000018794) #27	ENSPTXG00000018793	RFX3 (ENSPTXG00000018767) #29	GLIS3 (ENSPTXG00000018766) #32	SLC1A1 (ENSPTXG00000018764) #33	CDC37L1 (ENSPTXG00000018763) #36	AK3 (ENSPTXG00000018762) #37	RCL1 (ENSPTXG00000018760)	JAK2 (ENSPTXG00000018752)	PLGRKT (ENSPTXG00000018751)	PDCD1LG2 (ENSPTXG00000018750)	RIC1 (ENSPTXG00000018749)	ERMP1 (ENSPTXG00000018748)
Blue-lipped sea krait	MODERN SPECIES	2851																SMARCA2 (ENSLLTG00000001135) #22
Indian cobra	MODERN SPECIES	1	ENTREP1 (ENSNNAG00000017925)	TJP2 (ENSNNAG00000017694)	FXN (ENSNNAG00000017581)	PIP5K1B (ENSNNAG00000017571) #7	TMEM252 (ENSNNAG00000017566) #10	PGM5 (ENSNNAG00000017535) #11	ENSNNAG00000017526	ENSNNAG00000017514 #14	ENSNNAG00000017496 #16	ENSNNAG00000017479 #16	ENSNNAG00000017470 #16	KANK1 (ENSNNAG00000017462) #17	DMRT1 (ENSNNAG00000017439) #19	DMRT3 (ENSNNAG00000017425) #20	DMRT2 (ENSNNAG00000017421) #21	SMARCA2 (ENSNNAG00000016662) #22	VLDLR (ENSNNAG00000016101) #25	KCNV2 (ENSNNAG00000016029) #26	ENSNNAG00000015978 #27	ENSNNAG00000015953 #27	ENSNNAG00000015896	RFX3 (ENSNNAG00000015581) #29	GLIS3 (ENSNNAG00000015518) #32	ENSNNAG00000015513	SLC1A1 (ENSNNAG00000015451) #33	CDC37L1 (ENSNNAG00000015380) #36	AK3 (ENSNNAG00000015359) #37	RCL1 (ENSNNAG00000015339)	JAK2 (ENSNNAG00000015311)	PLGRKT (ENSNNAG00000015298)	PDCD1LG2 (ENSNNAG00000015251)
Lizard	MODERN SPECIES	1	APBA1 (ENSACAG00000001040)	ENTREP1 (ENSACAG00000001191)	ENSACAG00000001252	FXN (ENSACAG00000043698)	PIP5K1B (ENSACAG00000001281) #7	TMEM252 (ENSACAG00000029180) #10	PGM5 (ENSACAG00000001410) #11	ENSACAG00000008130	ENSACAG00000001658 #14	DOCK8 (ENSACAG00000001924) #16	ENSACAG00000036574	KANK1 (ENSACAG00000002270) #17	DMRT1 (ENSACAG00000002356) #19	DMRT3 (ENSACAG00000002401) #20	DMRT2 (ENSACAG00000002411) #21	SMARCA2 (ENSACAG00000002423) #22	VLDLR (ENSACAG00000003015) #25	KCNV2 (ENSACAG00000003138) #26	PUM3 (ENSACAG00000003174) #27	ENSACAG00000003227	ENSACAG00000035469	RFX3 (ENSACAG00000003262) #29	GLIS3 (ENSACAG00000003374) #32	ENSACAG00000036408	SLC1A1 (ENSACAG00000003433) #33	ENSACAG00000043625	SPATA6L (ENSACAG00000029209) #34	CDC37L1 (ENSACAG00000003578) #36	AK3 (ENSACAG00000003605) #37	RCL1 (ENSACAG00000003640)	JAK2 (ENSACAG00000003673)
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000017892	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000161645.a.e	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a.i #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32
Argentine black and white tegu	MODERN SPECIES	25	ENTREP1 (ENSSMRG00000016063)	TJP2 (ENSSMRG00000016062)	FXN (ENSSMRG00000016061)	PIP5K1B (ENSSMRG00000016060) #7	TMEM252 (ENSSMRG00000016059) #10	ENSSMRG00000016058	PGM5 (ENSSMRG00000016057) #11	ENSSMRG00000016056	ENSSMRG00000016054 #14	DOCK8 (ENSSMRG00000012483) #16	KANK1 (ENSSMRG00000012463) #17	DMRT1 (ENSSMRG00000012418) #19	DMRT3 (ENSSMRG00000012413) #20	DMRT2 (ENSSMRG00000012412) #21	ENSSMRG00000012401	SMARCA2 (ENSSMRG00000012396) #22	VLDLR (ENSSMRG00000012387) #25	KCNV2 (ENSSMRG00000012381) #26	PUM3 (ENSSMRG00000012380) #27	ENSSMRG00000012379	RFX3 (ENSSMRG00000012376) #29	GLIS3 (ENSSMRG00000012362) #32	ENSSMRG00000012349	KIAA2026 (ENSSMRG00000012326)	MLANA (ENSSMRG00000012325)	ERMP1 (ENSSMRG00000012324)	RIC1 (ENSSMRG00000012320)	PDCD1LG2 (ENSSMRG00000012319)	PLGRKT (ENSSMRG00000012308)	ENSSMRG00000012307	JAK2 (ENSSMRG00000012306)
Common wall lizard	MODERN SPECIES	8	HACD4 (ENSPMRG00000021384)	ENSPMRG00000021394	ENSPMRG00000021401	ENSPMRG00000021420	ENSPMRG00000021428	ENSPMRG00000021432	ENSPMRG00000021439	ENSPMRG00000021447	MTAP (ENSPMRG00000021457)	CDKN2A (ENSPMRG00000021465)	CDKN2B (ENSPMRG00000021467)	KANK1 (ENSPMRG00000021475) #17	DMRT1 (ENSPMRG00000021487) #19	DMRT3 (ENSPMRG00000021491) #20	DMRT2 (ENSPMRG00000021499) #21	SMARCA2 (ENSPMRG00000021519) #22	ENSPMRG00000021578	VLDLR (ENSPMRG00000021598) #25	ENSPMRG00000021621	KCNV2 (ENSPMRG00000021625) #26	PUM3 (ENSPMRG00000021630) #27	ENSPMRG00000021639	RFX3 (ENSPMRG00000021654) #29	GLIS3 (ENSPMRG00000021747) #32	ENSPMRG00000021781	TMEM39A (ENSPMRG00000021818)	ALG5 (ENSPMRG00000021829)	EXOSC8 (ENSPMRG00000021840)	SUPT20H (ENSPMRG00000021871)	POSTN (ENSPMRG00000021938)	ENSPMRG00000022112
tuatara	MODERN SPECIES	1196																SMARCA2 (ENSSPUG00000001629) #22	VLDLR (ENSSPUG00000001691) #25	KCNV2 (ENSSPUG00000001702) #26	PUM3 (ENSSPUG00000001707) #27	ENSSPUG00000001722	RFX3 (ENSSPUG00000001791) #29	ENSSPUG00000001944	ENSSPUG00000001966 #32	ENSSPUG00000001985 #32
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Cryptodira	ANCESTRAL SPECIES	48	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00950000185504	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00950000185504	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Emydidae	ANCESTRAL SPECIES	20	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00950000185504	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430
Three-toed box turtle	MODERN SPECIES	50	APBA1 (ENSTMTG00000004858)	ENTREP1 (ENSTMTG00000005867)	TJP2 (ENSTMTG00000005907)	FXN (ENSTMTG00000005998)	PIP5K1B (ENSTMTG00000006026) #7	TMEM252 (ENSTMTG00000006221) #10	PGM5 (ENSTMTG00000006248) #11	ENSTMTG00000006284 #14	DOCK8 (ENSTMTG00000006799) #16	ENSTMTG00000015924	KANK1 (ENSTMTG00000015933) #17	ENSTMTG00000015959	DMRT1 (ENSTMTG00000015977) #19	DMRT3 (ENSTMTG00000015991) #20	DMRT2 (ENSTMTG00000016004) #21	SMARCA2 (ENSTMTG00000016037) #22	VLDLR (ENSTMTG00000016110) #25	KCNV2 (ENSTMTG00000016251) #26	PUM3 (ENSTMTG00000016264) #27	ENSTMTG00000016298	RFX3 (ENSTMTG00000016347) #29	GLIS3 (ENSTMTG00000016537) #32	SLC1A1 (ENSTMTG00000016551) #33	SPATA6L (ENSTMTG00000016584) #34	CDC37L1 (ENSTMTG00000016607) #36	AK3 (ENSTMTG00000016623) #37	RCL1 (ENSTMTG00000016634)	JAK2 (ENSTMTG00000016660)	ENSTMTG00000016706	PLGRKT (ENSTMTG00000016710)	CD274 (ENSTMTG00000016745)
painted turtle	MODERN SPECIES	15	ENSCPBG00000025309	APBA1 (ENSCPBG00000025317)	ENTREP1 (ENSCPBG00000025326)	TJP2 (ENSCPBG00000025332)	FXN (ENSCPBG00000025340)	PIP5K1B (ENSCPBG00000025343) #7	TMEM252 (ENSCPBG00000025354) #10	PGM5 (ENSCPBG00000025365) #11	ENSCPBG00000025429 #14	DOCK8 (ENSCPBG00000025439) #16	ENSCPBG00000025452	KANK1 (ENSCPBG00000025457) #17	DMRT1 (ENSCPBG00000025458) #19	DMRT3 (ENSCPBG00000025461) #20	DMRT2 (ENSCPBG00000025462) #21	SMARCA2 (ENSCPBG00000025463) #22	VLDLR (ENSCPBG00000025468) #25	KCNV2 (ENSCPBG00000025469) #26	PUM3 (ENSCPBG00000025470) #27	ENSCPBG00000025471	RFX3 (ENSCPBG00000025473) #29	GLIS3 (ENSCPBG00000025474) #32	SLC1A1 (ENSCPBG00000025475) #33	SPATA6L (ENSCPBG00000025478) #34	CDC37L1 (ENSCPBG00000025479) #36	AK3 (ENSCPBG00000025480) #37	RCL1 (ENSCPBG00000025481)	JAK2 (ENSCPBG00000025483)	ENSCPBG00000025484	PLGRKT (ENSCPBG00000025485)	CD274 (ENSCPBG00000025486)
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00940000156820.a.a	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000157140.b.b	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a.ib #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757.c #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00950000186013	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005014485	PTAR1 (ENSGEVG00005014516)	APBA1 (ENSGEVG00005014541)	ENTREP1 (ENSGEVG00005014644)	TJP2 (ENSGEVG00005014736)	FXN (ENSGEVG00005014780)	PIP5K1B (ENSGEVG00005014815) #7	TMEM252 (ENSGEVG00005014919) #10	PGM5 (ENSGEVG00005014982) #11	ENSGEVG00005015265 #14	DOCK8 (ENSGEVG00005015343) #16	KANK1 (ENSGEVG00005015437) #17	DMRT1 (ENSGEVG00005015585) #19	DMRT3 (ENSGEVG00005015865) #20	DMRT2 (ENSGEVG00005015890) #21	SMARCA2 (ENSGEVG00005015950) #22	KCNV2 (ENSGEVG00005016696) #26	ENSGEVG00005016771 #27	ENSGEVG00005017017	RFX3 (ENSGEVG00005017166) #29	GLIS3 (ENSGEVG00005017217) #32	ENSGEVG00005017260	SLC1A1 (ENSGEVG00005017274) #33	SPATA6L (ENSGEVG00005017368) #34	CDC37L1 (ENSGEVG00005017405) #36	AK3 (ENSGEVG00005017423) #37	RCL1 (ENSGEVG00005017434)	JAK2 (ENSGEVG00005017459)	ENSGEVG00005017487	PLGRKT (ENSGEVG00005017508)	CD274 (ENSGEVG00005017525)
Abingdon island giant tortoise	MODERN SPECIES	2200	FXN (ENSCABG00000022464)	PIP5K1B (ENSCABG00000022463) #7	TMEM252 (ENSCABG00000022462) #10	PGM5 (ENSCABG00000022451) #11	ENSCABG00000022444	ENSCABG00000022441 #14	ENSCABG00000022438	ENSCABG00000022437 #16	ENSCABG00000022434 #16	ENSCABG00000022433 #17	ENSCABG00000022432 #17	DMRT1 (ENSCABG00000022413) #19	DMRT3 (ENSCABG00000022401) #20	DMRT2 (ENSCABG00000022399) #21	ENSCABG00000022392	SMARCA2 (ENSCABG00000019732) #22	VLDLR (ENSCABG00000019415) #25	KCNV2 (ENSCABG00000019411) #26	ENSCABG00000019410 #27	ENSCABG00000019407	RFX3 (ENSCABG00000019365) #29	GLIS3 (ENSCABG00000019359) #32	ENSCABG00000019358	SLC1A1 (ENSCABG00000019357) #33	ENSCABG00000019356
Chinese turtle	MODERN SPECIES	1589																SMARCA2 (ENSPSIG00000006284) #22	VLDLR (ENSPSIG00000009633) #25	KCNV2 (ENSPSIG00000016104) #26	PUM3 (ENSPSIG00000016272) #27	ENSPSIG00000017939
Archosauria	ANCESTRAL SPECIES	31	ENSGT00530000063335.B.a.b	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430
Australian saltwater crocodile	MODERN SPECIES	67	PTAR1 (ENSCPRG00005005647)	ENSCPRG00005005637	APBA1 (ENSCPRG00005005588)	ENTREP1 (ENSCPRG00005005585)	ENSCPRG00005005571	FXN (ENSCPRG00005005552)	PIP5K1B (ENSCPRG00005005542) #7	TMEM252 (ENSCPRG00005005520) #10	PGM5 (ENSCPRG00005005087) #11	ENSCPRG00005005028 #14	DOCK8 (ENSCPRG00005004968) #16	KANK1 (ENSCPRG00005004939) #17	DMRT1 (ENSCPRG00005004893) #19	DMRT3 (ENSCPRG00005004879) #20	DMRT2 (ENSCPRG00005004868) #21	SMARCA2 (ENSCPRG00005004803) #22	ENSCPRG00005004774	VLDLR (ENSCPRG00005004758) #25	KCNV2 (ENSCPRG00005004751) #26	PUM3 (ENSCPRG00005004547) #27	ENSCPRG00005004519	RFX3 (ENSCPRG00005004493) #29	GLIS3 (ENSCPRG00005004466) #32	SLC1A1 (ENSCPRG00005004424) #33	SPATA6L (ENSCPRG00005004407) #34	CDC37L1 (ENSCPRG00005004396) #36	AK3 (ENSCPRG00005004395) #37	RCL1 (ENSCPRG00005004387)	JAK2 (ENSCPRG00005004373)	ENSCPRG00005004371	PLGRKT (ENSCPRG00005004366)
Aves	ANCESTRAL SPECIES	45						ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430
African ostrich	DUPLICATION
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	431														DMRT3 (ENSSCUG00000009435) #20	DMRT2 (ENSSCUG00000009438) #21	ENSSCUG00000009444 #22
African ostrich	MODERN SPECIES	923																ENSSCUG00000016608 #22	VLDLR (ENSSCUG00000016871) #25	PUM3 (ENSSCUG00000016947) #27	ENSSCUG00000016959	RFX3 (ENSSCUG00000016961) #29	GLIS3 (ENSSCUG00000016965) #32
African ostrich	MODERN SPECIES	622																ENSSCUG00000008383 #22
Neognathae	ANCESTRAL SPECIES	12	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000155389.d.a	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161430	ENSGT00940000161373
Great tit	MODERN SPECIES	642	ENSPMJG00000016175	TMEM174 (ENSPMJG00000016176)	TMEM171 (ENSPMJG00000016177)	FCHO2 (ENSPMJG00000016179)	TNPO1 (ENSPMJG00000016180)	ZNF366 (ENSPMJG00000016182)	MRPS27 (ENSPMJG00000016185)	MAP1B (ENSPMJG00000016186)	PGM5 (ENSPMJG00000016187) #11	ENSPMJG00000016188 #10	ENSPMJG00000016189 #14	DOCK8 (ENSPMJG00000016190) #16	KANK1 (ENSPMJG00000016191) #17	DMRT1 (ENSPMJG00000016192) #19	DMRT2 (ENSPMJG00000016193) #21	SMARCA2 (ENSPMJG00000016196) #22	VLDLR (ENSPMJG00000016197) #25	KCNV2 (ENSPMJG00000016198) #26	PUM3 (ENSPMJG00000016199) #27	ENSPMJG00000016200	RFX3 (ENSPMJG00000016201) #29	GLIS3 (ENSPMJG00000016202) #32	SLC1A1 (ENSPMJG00000016203) #33	ENSPMJG00000016204	ENSPMJG00000016205	CDC37L1 (ENSPMJG00000016206) #36	AK3 (ENSPMJG00000016207) #37	RCL1 (ENSPMJG00000016208)	JAK2 (ENSPMJG00000016210)	ENSPMJG00000016211	PLGRKT (ENSPMJG00000016212)
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #29	ENSGT01100000265023	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000169000	ENSGT00390000000375	ENSGT00940000161430
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #29	ENSGT01100000265023	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000154434
Medium ground finch	MODERN SPECIES	165				ZNF366 (ENSGFOG00000011222)	PTCD2 (ENSGFOG00000011214)	MRPS27 (ENSGFOG00000011203)	ENSGFOG00000011197	ENSGFOG00000011192 #10	PGM5 (ENSGFOG00000011183) #11	ENSGFOG00000011177 #14	ENSGFOG00000011169 #16	ENSGFOG00000011163 #16	ENSGFOG00000011159 #16	KANK1 (ENSGFOG00000011149) #17	DMRT2 (ENSGFOG00000011147) #21	SMARCA2 (ENSGFOG00000011122) #22	VLDLR (ENSGFOG00000009041) #25	KCNV2 (ENSGFOG00000008864) #26	PUM3 (ENSGFOG00000008804) #27	ENSGFOG00000008784	ENSGFOG00000008755 #29
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00960000189645	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #29	ENSGT01100000265023	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a.k	ENSGT00940000155640	ENSGT00940000154434
Zebra finch	MODERN SPECIES	104	TMEM171 (ENSTGUG00000005840)	FCHO2 (ENSTGUG00000005780)	TNPO1 (ENSTGUG00000005729)	ZNF366 (ENSTGUG00000005717)	PTCD2 (ENSTGUG00000005705)	MRPS27 (ENSTGUG00000005691)	MAP1B (ENSTGUG00000005669)	TMEM252 (ENSTGUG00000005666) #10	PGM5 (ENSTGUG00000005644) #11	ENSTGUG00000005631 #14	DOCK8 (ENSTGUG00000005550) #16	KANK1 (ENSTGUG00000005531) #17	DMRT1 (ENSTGUG00000005524) #19	DMRT3 (ENSTGUG00000005521) #20	DMRT2 (ENSTGUG00000005515) #21	SMARCA2 (ENSTGUG00000005460) #22	VLDLR (ENSTGUG00000005386) #25	ENSTGUG00000005381	KCNV2 (ENSTGUG00000018853) #26	PUM3 (ENSTGUG00000005339) #27	ENSTGUG00000005327	RFX3 (ENSTGUG00000005287) #29	ENSTGUG00000022949	ENSTGUG00000024012	GLIS3 (ENSTGUG00000005266) #32	SLC1A1 (ENSTGUG00000005214) #33	ENSTGUG00000005203	ENSTGUG00000019342	ENSTGUG00000029693	CDC37L1 (ENSTGUG00000005189) #36	AK3 (ENSTGUG00000005155) #37
Common canary	MODERN SPECIES	25	FCHO2 (ENSSCAG00000004714)	ENSSCAG00000004350	ZNF366 (ENSSCAG00000004281)	PTCD2 (ENSSCAG00000004277)	MRPS27 (ENSSCAG00000004269)	ENSSCAG00000004262	TMEM252 (ENSSCAG00000004252) #10	PGM5 (ENSSCAG00000004248) #11	ENSSCAG00000004163 #14	DOCK8 (ENSSCAG00000003379) #16	KANK1 (ENSSCAG00000003206) #17	ENSSCAG00000003201	DMRT1 (ENSSCAG00000003198) #19	DMRT3 (ENSSCAG00000003195) #20	DMRT2 (ENSSCAG00000003191) #21	SMARCA2 (ENSSCAG00000003181) #22	VLDLR (ENSSCAG00000003171) #25	KCNV2 (ENSSCAG00000003167) #26	PUM3 (ENSSCAG00000003162) #27	ENSSCAG00000003143	ENSSCAG00000003133 #29	ENSSCAG00000003109	PTPRD (ENSSCAG00000002170)	TYRP1 (ENSSCAG00000001949)	MPDZ (ENSSCAG00000001857)	NFIB (ENSSCAG00000001799)	ZDHHC21 (ENSSCAG00000001780)	CER1 (ENSSCAG00000001779)	FREM1 (ENSSCAG00000001715)	TTC39B (ENSSCAG00000001680)	SNAPC3 (ENSSCAG00000001672)
Flycatcher	MODERN SPECIES	561	TNPO1 (ENSFALG00000010292)	ZNF366 (ENSFALG00000010297)	PTCD2 (ENSFALG00000010299)	MRPS27 (ENSFALG00000010306)	ENSFALG00000010312	ENSFALG00000025792	ENSFALG00000023216 #10	ENSFALG00000010321 #11	ENSFALG00000010329 #14	DOCK8 (ENSFALG00000010346) #16	KANK1 (ENSFALG00000010385) #17	DMRT1 (ENSFALG00000010388) #19	DMRT3 (ENSFALG00000010391) #20	DMRT2 (ENSFALG00000010393) #21	ENSFALG00000023612	SMARCA2 (ENSFALG00000010416) #22	VLDLR (ENSFALG00000010477) #25	KCNV2 (ENSFALG00000010508) #26	PUM3 (ENSFALG00000010509) #27	ENSFALG00000010512	RFX3 (ENSFALG00000010515) #29	ENSFALG00000027595	GLIS3 (ENSFALG00000010519) #32	SLC1A1 (ENSFALG00000010522) #33	ENSFALG00000014597	ENSFALG00000010526	ENSFALG00000010531	CDC37L1 (ENSFALG00000023426) #36	AK3 (ENSFALG00000010543) #37	ENSFALG00000025956	ENSFALG00000010553
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155389.c	ENSGT00940000155498.h	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Kakapo	MODERN SPECIES	19	ENSSHBG00005020632	ENSSHBG00005020631	PTCD2 (ENSSHBG00005020628)	MRPS27 (ENSSHBG00005020624)	ENSSHBG00005020612	ENSSHBG00005020611	TMEM252 (ENSSHBG00005020607) #10	PGM5 (ENSSHBG00005020602) #11	ENSSHBG00005020597 #14	DOCK8 (ENSSHBG00005020306) #16	ENSSHBG00005020200 #17	ENSSHBG00005020196 #17	DMRT1 (ENSSHBG00005020193) #19	DMRT3 (ENSSHBG00005020188) #20	DMRT2 (ENSSHBG00005020185) #21	SMARCA2 (ENSSHBG00005017989) #22	VLDLR (ENSSHBG00005017636) #25	KCNV2 (ENSSHBG00005017626) #26	PUM3 (ENSSHBG00005017598) #27	ENSSHBG00005017578	ENSSHBG00005017571 #29	GLIS3 (ENSSHBG00005017563) #32	AK3 (ENSSHBG00005017556) #37	CDC37L1 (ENSSHBG00005017553) #36	SLC1A1 (ENSSHBG00005017548) #33	RCL1 (ENSSHBG00005017541)	JAK2 (ENSSHBG00005017499)	ENSSHBG00005017481	PDCD1LG2 (ENSSHBG00005017476)	RIC1 (ENSSHBG00005017400)	ERMP1 (ENSSHBG00005017385)
Golden eagle	MODERN SPECIES	91	TNPO1 (ENSACCG00020016800)	ZNF366 (ENSACCG00020016792)	PTCD2 (ENSACCG00020016781)	MRPS27 (ENSACCG00020016774)	ENSACCG00020016767	ENSACCG00020016763	TMEM252 (ENSACCG00020016759) #10	PGM5 (ENSACCG00020016754) #11	ENSACCG00020016750 #14	DOCK8 (ENSACCG00020016450) #16	ENSACCG00020014971 #17	ENSACCG00020014951 #17	DMRT1 (ENSACCG00020014930) #19	DMRT3 (ENSACCG00020014910) #20	DMRT2 (ENSACCG00020014901) #21	SMARCA2 (ENSACCG00020014838) #22	VLDLR (ENSACCG00020014749) #25	KCNV2 (ENSACCG00020014716) #26	PUM3 (ENSACCG00020014700) #27	ENSACCG00020014683	RFX3 (ENSACCG00020014653) #29	GLIS3 (ENSACCG00020014613) #32	SLC1A1 (ENSACCG00020014593) #33	CDC37L1 (ENSACCG00020014575) #36	AK3 (ENSACCG00020014563) #37	RCL1 (ENSACCG00020014540)	JAK2 (ENSACCG00020014493)	ENSACCG00020014475	PLGRKT (ENSACCG00020014461)	ENSACCG00020014444	PDCD1LG2 (ENSACCG00020014424)
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876.e.a #16	ENSGT00940000154886.a.a.db.a #17	ENSGT00940000154886.a.a.db.b #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450
Japanese quail	MODERN SPECIES	699	ENSCJPG00005002058	ENSCJPG00005002062	ENSCJPG00005002070	ZNF366 (ENSCJPG00005002079)	PTCD2 (ENSCJPG00005002087)	MRPS27 (ENSCJPG00005002094)	MAP1B (ENSCJPG00005002102)	TMEM252 (ENSCJPG00005002105) #10	PGM5 (ENSCJPG00005002107) #11	ENSCJPG00005002115 #14	DOCK8 (ENSCJPG00005002158) #16	KANK1 (ENSCJPG00005002171) #17	DMRT1 (ENSCJPG00005002189) #19	DMRT3 (ENSCJPG00005002191) #20	DMRT2 (ENSCJPG00005002194) #21	SMARCA2 (ENSCJPG00005002199) #22	VLDLR (ENSCJPG00005002212) #25	KCNV2 (ENSCJPG00005003166) #26	PUM3 (ENSCJPG00005003170) #27	RFX3 (ENSCJPG00005003180) #29	GLIS3 (ENSCJPG00005003188) #32	SLC1A1 (ENSCJPG00005003195) #33	CDC37L1 (ENSCJPG00005003200) #36	AK3 (ENSCJPG00005003204) #37	RCL1 (ENSCJPG00005003205)	JAK2 (ENSCJPG00005003214)	ENSCJPG00005003229	ENSCJPG00005003230	PDCD1LG2 (ENSCJPG00005003231)	RIC1 (ENSCJPG00005003232)	ERMP1 (ENSCJPG00005003237)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00940000155876.e.a #16	ENSGT00940000154886.a.a.db.a #17	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00940000161373	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000164450
Chicken	MODERN SPECIES	131	ENSGALG00010012110	FCHO2 (ENSGALG00010013297)	TNPO1 (ENSGALG00010010186)	ZNF366 (ENSGALG00010012008)	PTCD2 (ENSGALG00010011572)	MRPS27 (ENSGALG00010011649)	MAP1B (ENSGALG00010011681)	TMEM252 (ENSGALG00010011444) #10	PGM5 (ENSGALG00010011887) #11	CBWD1 (ENSGALG00010011287) #14	DOCK8 (ENSGALG00010011311) #16	KANK1 (ENSGALG00010011351) #17	DMRT1 (ENSGALG00010011437) #20	ENSGALG00010011462	DMRT2 (ENSGALG00010011482) #21	SMARCA2 (ENSGALG00010011808) #22	VLDLR (ENSGALG00010011837) #25	KCNV2 (ENSGALG00010010198) #26	PUM3 (ENSGALG00010011384) #27	RFX3 (ENSGALG00010011873) #29	GLIS3 (ENSGALG00010010147) #32	SLC1A1 (ENSGALG00010011937) #33	CDC37L1 (ENSGALG00010011133) #36	AK3 (ENSGALG00010011143) #37	RCL1 (ENSGALG00010011222)	JAK2 (ENSGALG00010012833)	RLN3 (ENSGALG00010012847)	CD274 (ENSGALG00010012871)	PDCD1LG2 (ENSGALG00010013312)	RIC1 (ENSGALG00010012889)	ERMP1 (ENSGALG00010012904)
Turkey	MODERN SPECIES	1299	ENSMGAG00000005094 #17	ENSMGAG00000022563 #16	ENSMGAG00000005034 #16	ENSMGAG00000022224 #16	ENSMGAG00000005135	ENSMGAG00000018973 #14	ENSMGAG00000017142 #11	ENSMGAG00000020678 #10	ENSMGAG00000019468 #17	ENSMGAG00000005156 #19	ENSMGAG00000021756	ENSMGAG00000016103 #21	ENSMGAG00000002255 #27	KCNV2 (ENSMGAG00000001039) #26	VLDLR (ENSMGAG00000003673) #25	ENSMGAG00000016991 #22	ENSMGAG00000019982	SLC1A1 (ENSMGAG00000005250) #33	CDC37L1 (ENSMGAG00000005316) #36	AK3 (ENSMGAG00000005306) #37	ENSMGAG00000021960	ENSMGAG00000002245	JAK2 (ENSMGAG00000005291)	ENSMGAG00000016647	ENSMGAG00000005340	PDCD1LG2 (ENSMGAG00000020864)	RIC1 (ENSMGAG00000005427)	ERMP1 (ENSMGAG00000005374)	ENSMGAG00000005367	MLANA (ENSMGAG00000005363)	KIAA2026 (ENSMGAG00000021166)
Anatidae	ANCESTRAL SPECIES	20	ENSGT00940000157105	ENSGT00940000155389.d.c	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00640000091523 #14	ENSGT00950000185125	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00390000000375	ENSGT00940000161373	ENSGT00390000002955
Pink-footed goose	MODERN SPECIES	236																SMARCA2 (ENSABRG00000010971) #22	VLDLR (ENSABRG00000009580) #25	KCNV2 (ENSABRG00000009444) #26	PUM3 (ENSABRG00000009367) #27	ENSABRG00000009339	ENSABRG00000009271 #29	GLIS3 (ENSABRG00000009214) #32	SLC1A1 (ENSABRG00000009175) #33
Duck	DUPLICATION
Duck	MODERN SPECIES	94																ENSAPLG00000024781 #22
Duck	MODERN SPECIES	4281	TNPO1 (ENSAPLG00000009619)	ENSAPLG00000022145	ZNF366 (ENSAPLG00000010278)	ENSAPLG00000019695	MRPS27 (ENSAPLG00000010577)	MAP1B (ENSAPLG00000030918)	PGM5 (ENSAPLG00000011043) #11	TMEM252 (ENSAPLG00000010990) #10	ENSAPLG00000012182 #14	ENSAPLG00000025062	ENSAPLG00000017480 #16	ENSAPLG00000012724 #16	KANK1 (ENSAPLG00000020411) #17	DMRT3 (ENSAPLG00000013743) #20	DMRT2 (ENSAPLG00000013872) #21	SMARCA2 (ENSAPLG00000013873) #22	ENSAPLG00000015474 #25	KCNV2 (ENSAPLG00000018126) #26	PUM3 (ENSAPLG00000002920) #27	ENSAPLG00000019362	RFX3 (ENSAPLG00000011096) #29	GLIS3 (ENSAPLG00000014844) #32	SLC1A1 (ENSAPLG00000015022) #33	CDC37L1 (ENSAPLG00000006614) #36	AK3 (ENSAPLG00000006356) #37	RCL1 (ENSAPLG00000006031)	JAK2 (ENSAPLG00000004748)	ENSAPLG00000011419	PLGRKT (ENSAPLG00000018947)	ENSAPLG00000004669	PDCD1LG2 (ENSAPLG00000004593)
Anura	ANCESTRAL SPECIES	29	ENSGT00940000155164	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639 #7	ENSGT00390000005250 #10	ENSGT00940000158126 #11	ENSGT00940000157140.a	ENSGT00940000163497	ENSGT00940000164556	ENSGT00640000091523 #14	ENSGT00940000155876 #16	ENSGT00940000154886.a.a #17	ENSGT00940000156489 #19	ENSGT00940000160420 #20	ENSGT00940000156282.a.a #21	ENSGT00940000154821.b #22	ENSGT00940000155460 #25	ENSGT00940000157438 #26	ENSGT00390000015757 #27	ENSGT00940000164013	ENSGT01050000244879.a.a.b #29	ENSGT00940000156896 #32	ENSGT00940000155397.b #33	ENSGT00530000063821.b.b #34	ENSGT00390000013443.d #36	ENSGT00940000155120 #37	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154434	ENSGT00390000000375	ENSGT00940000161373
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000022171	ENSLLEG00000022237	ENSLLEG00000022271	ENSLLEG00000022376	ENSLLEG00000022440 #14	DOCK8 (ENSLLEG00000000077) #16	KANK1 (ENSLLEG00000000147) #17	ENSLLEG00000000168	DMRT1 (ENSLLEG00000000180) #19	DMRT3 (ENSLLEG00000000195) #20	ENSLLEG00000000201	DMRT2 (ENSLLEG00000000206) #21	ENSLLEG00000000229	ENSLLEG00000000269	ENSLLEG00000000280	SMARCA2 (ENSLLEG00000000350) #22	ENSLLEG00000000580	VLDLR (ENSLLEG00000000597) #25	KCNV2 (ENSLLEG00000000652) #26	PUM3 (ENSLLEG00000000665) #27	RFX3 (ENSLLEG00000000718) #29	ENSLLEG00000000868	ENSLLEG00000000876	GLIS3 (ENSLLEG00000000897) #32	ENSLLEG00000000928	SLC1A1 (ENSLLEG00000001013) #33	SPATA6L (ENSLLEG00000001082) #34	CDC37L1 (ENSLLEG00000001174) #36	AK3 (ENSLLEG00000001204) #37	ENSLLEG00000001238	RCL1 (ENSLLEG00000001251)
Frog	MODERN SPECIES		tjp2 (ENSXETG00000001683)	pip5k1b (ENSXETG00000001678) #7	ENSXETG00000001676	tmem252 (ENSXETG00000035157) #10	pgm5 (ENSXETG00000001670) #11	foxd4l1.2 (ENSXETG00000001668)	foxd4l1.1 (ENSXETG00000001667)	XB5815362 [provisional:cyp2j6] (ENSXETG00000001660)	cbwd1.1 (ENSXETG00000001666)	cbwd2 (ENSXETG00000001656) #14	dock8 (ENSXETG00000001648) #16	kank1 (ENSXETG00000002278) #17	dmrt1 (ENSXETG00000002277) #19	dmrt3 (ENSXETG00000015285) #20	dmrt2 (ENSXETG00000033983) #21	smarca2 (ENSXETG00000015299) #22	vldlr (ENSXETG00000011709) #25	kcnv2 (ENSXETG00000011708) #26	pum3 (ENSXETG00000011707) #27	carm1p1 (ENSXETG00000036672)	crygbl.2 (ENSXETG00000048659)	rfx3 (ENSXETG00000011698) #29	glis3 (ENSXETG00000011692) #32	slc1a1 (ENSXETG00000011685) #33	spata6l (ENSXETG00000030483) #34	cdc37l1 (ENSXETG00000000595) #36	ak3 (ENSXETG00000000588) #37	rcl1 (ENSXETG00000000592)	ENSXETG00000042090	jak2 (ENSXETG00000000586)	plgrkt (ENSXETG00000000587)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	897											KANK1 (ENSLACG00000013685) #17	ENSLACG00000022162	DMRT1 (ENSLACG00000013139) #19	DMRT3 (ENSLACG00000012023) #20	DMRT2 (ENSLACG00000011510) #21	SMARCA2 (ENSLACG00000000270) #22
Coelacanth	MODERN SPECIES	1155																ENSLACG00000000879 #22	VLDLR (ENSLACG00000006989) #25	KCNV2 (ENSLACG00000007982) #26	PUM3 (ENSLACG00000008312) #27	ENSLACG00000009739	RFX3 (ENSLACG00000011846) #29