Glires ANCESTRAL SPECIES 9 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT00940000164013 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Rodentia ANCESTRAL SPECIES 9 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Sciuridae ANCESTRAL SPECIES 6 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00900000143153 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Eurasian red squirrel MODERN SPECIES 6 ENTREP1 (ENSSVLG00005022461) #7 TJP2 (ENSSVLG00005022528) #8 ENSSVLG00005022798 #9 PIP5K1B (ENSSVLG00005022876) #10 PABIR1 (ENSSVLG00005023031) #11 TMEM252 (ENSSVLG00005023049) #12 PGM5 (ENSSVLG00005023081) #13 ENSSVLG00005023212 #14 ENSSVLG00005023230 #15 ENSSVLG00005023280 #16 DOCK8 (ENSSVLG00005023344) #17 KANK1 (ENSSVLG00005023807) #18 DMRT1 (ENSSVLG00005023845) #19 DMRT3 (ENSSVLG00005023888) #20 DMRT2 (ENSSVLG00005023918) #21 SMARCA2 (ENSSVLG00005024009) #22 ENSSVLG00005024201 #23 VLDLR (ENSSVLG00005024232) #24 KCNV2 (ENSSVLG00005024318) #25 PUM3 (ENSSVLG00005024338) #26 ENSSVLG00005024401 #27 RFX3 (ENSSVLG00005024420) #28 GLIS3 (ENSSVLG00005024543) #29 SLC1A1 (ENSSVLG00005024569) #30 SPATA6L (ENSSVLG00005024615) #31 PLPP6 (ENSSVLG00005024689) #32 CDC37L1 (ENSSVLG00005024699) #33 ENSSVLG00005024721 #34 RCL1 (ENSSVLG00005024752) #35 JAK2 (ENSSVLG00005024808) #36 INSL6 (ENSSVLG00005024849) #37 Marmotini ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00900000143153 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Marmotini_b ANCESTRAL SPECIES 88 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00900000143153 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Squirrel MODERN SPECIES 103 TJP2 (ENSSTOG00000011181) #8 ENSSTOG00000033140 #9 PIP5K1B (ENSSTOG00000023540) #10 PABIR1 (ENSSTOG00000022211) #11 TMEM252 (ENSSTOG00000008860) #12 PGM5 (ENSSTOG00000008834) #13 ENSSTOG00000029964 #14 ENSSTOG00000028764 #15 ENSSTOG00000031824 DOCK8 (ENSSTOG00000016411) #17 ENSSTOG00000030036 KANK1 (ENSSTOG00000010218) #18 DMRT1 (ENSSTOG00000010235) #19 DMRT3 (ENSSTOG00000023574) #20 DMRT2 (ENSSTOG00000026909) #21 SMARCA2 (ENSSTOG00000006812) #22 ENSSTOG00000031987 #23 VLDLR (ENSSTOG00000006880) #24 KCNV2 (ENSSTOG00000020003) #25 PUM3 (ENSSTOG00000009586) #26 RFX3 (ENSSTOG00000006974) #28 GLIS3 (ENSSTOG00000000302) #29 ENSSTOG00000031708 SLC1A1 (ENSSTOG00000023583) #30 PLPP6 (ENSSTOG00000025831) #32 SPATA6L (ENSSTOG00000000018) #31 CDC37L1 (ENSSTOG00000000020) #33 AK3 (ENSSTOG00000000021) #34 RCL1 (ENSSTOG00000000023) #35 JAK2 (ENSSTOG00000006679) #36 ENSSTOG00000016298 #37 Arctic ground squirrel MODERN SPECIES 335 DMRT2 (ENSUPAG00010017350) #21 SMARCA2 (ENSUPAG00010016919) #22 ENSUPAG00010016900 #23 VLDLR (ENSUPAG00010016811) #24 KCNV2 (ENSUPAG00010016794) #25 PUM3 (ENSUPAG00010016775) #26 Alpin marmot MODERN SPECIES 32 FXN (ENSMMMG00000003605) #9 PIP5K1B (ENSMMMG00000003495) #10 PABIR1 (ENSMMMG00000003490) #11 TMEM252 (ENSMMMG00000003476) #12 PGM5 (ENSMMMG00000003460) #13 ENSMMMG00000003446 #14 ENSMMMG00000003411 #15 DOCK8 (ENSMMMG00000003328) #17 ENSMMMG00000003304 ENSMMMG00000003301 KANK1 (ENSMMMG00000003281) #18 DMRT1 (ENSMMMG00000003270) #19 DMRT3 (ENSMMMG00000003239) #20 DMRT2 (ENSMMMG00000003238) #21 ENSMMMG00000003212 SMARCA2 (ENSMMMG00000002811) #22 ENSMMMG00000002785 ENSMMMG00000002765 #23 VLDLR (ENSMMMG00000002594) #24 ENSMMMG00000002572 KCNV2 (ENSMMMG00000002550) #25 PUM3 (ENSMMMG00000002513) #26 ENSMMMG00000002504 GLIS3 (ENSMMMG00000002430) #29 ENSMMMG00000002416 ENSMMMG00000002405 SLC1A1 (ENSMMMG00000002380) #30 SPATA6L (ENSMMMG00000002361) #31 PLPP6 (ENSMMMG00000002356) #32 CDC37L1 (ENSMMMG00000002322) #33 AK3 (ENSMMMG00000002286) #34 Hystricomorpha ANCESTRAL SPECIES 46 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Naked mole-rat female MODERN SPECIES 3 TMEM252 (ENSHGLG00000033131) #12 PGM5 (ENSHGLG00000013086) #13 ENSHGLG00000046909 #14 CBWD3 (ENSHGLG00000015962) #15 ENSHGLG00000020779 DOCK8 (ENSHGLG00000016578) #17 ENSHGLG00000050403 ENSHGLG00000045832 KANK1 (ENSHGLG00000012000) #18 DMRT1 (ENSHGLG00000043033) #19 DMRT3 (ENSHGLG00000012858) #20 ENSHGLG00000033430 #21 ENSHGLG00000036415 ENSHGLG00000035319 ENSHGLG00000013697 ENSHGLG00000005215 #22 ENSHGLG00000035043 ENSHGLG00000016566 VLDLR (ENSHGLG00000016113) #24 KCNV2 (ENSHGLG00000015810) #25 ENSHGLG00000015868 #26 ENSHGLG00000016314 ENSHGLG00000042585 ENSHGLG00000019207 ENSHGLG00000018913 #28 ENSHGLG00000015091 #29 ENSHGLG00000032696 ENSHGLG00000017534 SLC1A1 (ENSHGLG00000015155) #30 PLPP6 (ENSHGLG00000038858) #32 SPATA6L (ENSHGLG00000018477) #31 Hystricomorpha_a DUPLICATION Hystricomorpha_a DUPLICATION Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154821.b.c.a #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154821.b.c.a #22 Degu MODERN SPECIES 257 NEK3 (ENSODEG00000001087) CKAP2 (ENSODEG00000001025) VPS36 (ENSODEG00000000909) THSD1 (ENSODEG00000000849) ENSODEG00000000791 ENSODEG00000000772 ENSODEG00000000759 ENSODEG00000000752 FOXO1 (ENSODEG00000000747) ENSODEG00000000728 ENSODEG00000000717 #22 COG6 (ENSODEG00000003859) LHFPL6 (ENSODEG00000003836) ENSODEG00000003473 PROSER1 (ENSODEG00000003365) ENSODEG00000003312 ENSODEG00000003298 ENSODEG00000003236 TWSG1 (ENSODEG00000003220) RALBP1 (ENSODEG00000001763) PPP4R1 (ENSODEG00000001319) RAB31 (ENSODEG00000001085) VAPA (ENSODEG00000001065) APCDD1 (ENSODEG00000001023) ENSODEG00000000963 PIEZO2 (ENSODEG00000000546) Guinea pig MODERN SPECIES 13 ENSCPOG00000031141 ENSCPOG00000034500 TRDC (ENSCPOG00000000844) ENSCPOG00000033000 ENSCPOG00000040263 OR4E2 (ENSCPOG00000026054) OR10G2 (ENSCPOG00000039240) SALL2 (ENSCPOG00000040220) METTL3 (ENSCPOG00000002545) TOX4 (ENSCPOG00000025504) RAB2B (ENSCPOG00000026575) CHD8 (ENSCPOG00000002538) SUPT16H (ENSCPOG00000002534) RPGRIP1 (ENSCPOG00000002526) ENSCPOG00000001474 ENSCPOG00000035385 #22 TMEM253 (ENSCPOG00000031716) ZNF219 (ENSCPOG00000022085) ARHGEF40 (ENSCPOG00000012862) ENSCPOG00000034881 RNASE13 (ENSCPOG00000019970) TPPP2 (ENSCPOG00000023279) NDRG2 (ENSCPOG00000002625) ENSCPOG00000031550 ENSCPOG00000027335 ENSCPOG00000035683 ENSCPOG00000031798 ENSCPOG00000038384 ENSCPOG00000026584 ENSCPOG00000036707 OR6S1 (ENSCPOG00000011915) Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154821.b.c.b #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154821.b.c.b #22 Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 76 ENSODEG00000015493 UPK3B (ENSODEG00000015729) DTX2 (ENSODEG00000015332) ENSODEG00000016251 SSC4D (ENSODEG00000015613) YWHAG (ENSODEG00000016579) HSPB1 (ENSODEG00000015698) ENSODEG00000016162 SRRM3 (ENSODEG00000015988) ENSODEG00000015859 ENSODEG00000020351 STYXL1 (ENSODEG00000015904) TMEM120A (ENSODEG00000015559) POR (ENSODEG00000015517) RHBDD2 (ENSODEG00000016225) ENSODEG00000015918 #22 ENSODEG00000015707 ENSODEG00000020305 CCL24 (ENSODEG00000015142) HIP1 (ENSODEG00000016265) ENSODEG00000015346 NSUN5 (ENSODEG00000015132) TRIM50 (ENSODEG00000015712) FKBP6 (ENSODEG00000016257) FZD9 (ENSODEG00000020544) BAZ1B (ENSODEG00000015361) BCL7B (ENSODEG00000015813) TBL2 (ENSODEG00000016440) MLXIPL (ENSODEG00000015218) ENSODEG00000015421 DNAJC30 (ENSODEG00000015782) Degu MODERN SPECIES 53 CDKN1B (ENSODEG00000012537) GPR19 (ENSODEG00000013191) CREBL2 (ENSODEG00000009860) ENSODEG00000019647 DUSP16 (ENSODEG00000009500) ENSODEG00000008969 MANSC1 (ENSODEG00000009259) LRP6 (ENSODEG00000008930) BCL2L14 (ENSODEG00000008991) ETV6 (ENSODEG00000009759) ENSODEG00000009522 ENSODEG00000008835 ENSODEG00000010368 ENSODEG00000009595 ENSODEG00000010351 ENSODEG00000009496 #22 ENSODEG00000009605 ENSODEG00000009202 CLEC12B (ENSODEG00000009413) CLEC1B (ENSODEG00000009886) CLEC1A (ENSODEG00000009200) CLEC7A (ENSODEG00000008833) TMEM52B (ENSODEG00000010426) GABARAPL1 (ENSODEG00000010037) ENSODEG00000009587 KLRD1 (ENSODEG00000010635) Degu MODERN SPECIES 47 ENSODEG00000007912 CC2D2A (ENSODEG00000008363) FBXL5 (ENSODEG00000009798) BST1 (ENSODEG00000008525) CD38 (ENSODEG00000008127) PROM1 (ENSODEG00000011756) TAPT1 (ENSODEG00000007601) LDB2 (ENSODEG00000010335) QDPR (ENSODEG00000009810) CLRN2 (ENSODEG00000009531) ENSODEG00000008724 MED28 (ENSODEG00000010235) FAM184B (ENSODEG00000008017) NCAPG (ENSODEG00000007988) ENSODEG00000007625 ENSODEG00000007550 #22 SLIT2 (ENSODEG00000011554) ENSODEG00000009142 KCNIP4 (ENSODEG00000009132) ADGRA3 (ENSODEG00000008912) GBA3 (ENSODEG00000007983) ENSODEG00000008409 ENSODEG00000008891 ENSODEG00000008421 LGI2 (ENSODEG00000009206) SEPSECS (ENSODEG00000010607) PI4K2B (ENSODEG00000008999) ENSODEG00000007449 ENSODEG00000006972 ENSODEG00000019525 SLC34A2 (ENSODEG00000010839) Degu MODERN SPECIES 48 ENSODEG00000013469 SLC10A1 (ENSODEG00000013278) ENSODEG00000014061 SMOC1 (ENSODEG00000012836) ENSODEG00000014278 SLC8A3 (ENSODEG00000013865) SYNJ2BP (ENSODEG00000014092) FLVCR2 (ENSODEG00000013854) ERG28 (ENSODEG00000013861) ENSODEG00000012504 ENSODEG00000013591 TGFB3 (ENSODEG00000013103) IFT43 (ENSODEG00000013768) ENSODEG00000012743 GPATCH2L (ENSODEG00000013474) ENSODEG00000013347 #22 ESRRB (ENSODEG00000013419) VASH1 (ENSODEG00000012506) ENSODEG00000019977 ANGEL1 (ENSODEG00000012416) LRRC74A (ENSODEG00000013756) CIPC (ENSODEG00000012302) ZDHHC22 (ENSODEG00000016163) TMEM63C (ENSODEG00000013078) ENSODEG00000011875 ENSODEG00000014820 POMT2 (ENSODEG00000012188) GSTZ1 (ENSODEG00000012019) TMED8 (ENSODEG00000012850) NOXRED1 (ENSODEG00000013652) VIPAS39 (ENSODEG00000013197) Degu MODERN SPECIES 173 ENSODEG00000019887 PRXL2A (ENSODEG00000012446) TSPAN14 (ENSODEG00000010478) SH2D4B (ENSODEG00000013141) NRG3 (ENSODEG00000011562) ENSODEG00000012959 ENSODEG00000011340 ENSODEG00000012481 CDHR1 (ENSODEG00000010766) LRIT2 (ENSODEG00000011609) LRIT1 (ENSODEG00000012611) RGR (ENSODEG00000011393) CCSER2 (ENSODEG00000010793) GRID1 (ENSODEG00000011958) ENSODEG00000011516 ENSODEG00000019892 #22 ENSODEG00000011721 OPN4 (ENSODEG00000011887) ENSODEG00000011383 ENSODEG00000019882 BMPR1A (ENSODEG00000011436) ENSODEG00000012425 SNCG (ENSODEG00000012548) ENSODEG00000012123 ENSODEG00000011593 SHLD2 (ENSODEG00000012114) ENSODEG00000020251 ENSODEG00000011514 ZNF488 (ENSODEG00000011943) RBP3 (ENSODEG00000012586) GDF2 (ENSODEG00000012030) Hystricomorpha_a ANCESTRAL SPECIES 53 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b.d #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00900000143153 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Hystricomorpha_b ANCESTRAL SPECIES 71 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b.d #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Long-tailed chinchilla MODERN SPECIES 141 PTAR1 (ENSCLAG00000008830) APBA1 (ENSCLAG00000006043) ENTREP1 (ENSCLAG00000007506) #7 TJP2 (ENSCLAG00000012841) #8 FXN (ENSCLAG00000009225) #9 PIP5K1B (ENSCLAG00000011292) #10 TMEM252 (ENSCLAG00000005523) #12 PGM5 (ENSCLAG00000005854) #13 ENSCLAG00000006762 #14 ENSCLAG00000005076 #15 DOCK8 (ENSCLAG00000005204) #17 KANK1 (ENSCLAG00000015509) #18 DMRT1 (ENSCLAG00000015238) #19 DMRT3 (ENSCLAG00000015537) #20 DMRT2 (ENSCLAG00000006168) #21 SMARCA2 (ENSCLAG00000014484) #22 VLDLR (ENSCLAG00000007543) #24 KCNV2 (ENSCLAG00000013226) #25 PUM3 (ENSCLAG00000011892) #26 RFX3 (ENSCLAG00000009044) #28 GLIS3 (ENSCLAG00000008116) #29 ENSCLAG00000009238 SLC1A1 (ENSCLAG00000009832) #30 ENSCLAG00000009476 SPATA6L (ENSCLAG00000010497) #31 PLPP6 (ENSCLAG00000017735) #32 CDC37L1 (ENSCLAG00000005805) #33 AK3 (ENSCLAG00000006329) #34 RCL1 (ENSCLAG00000007445) #35 JAK2 (ENSCLAG00000005091) #36 INSL6 (ENSCLAG00000007423) #37 Degu MODERN SPECIES 128 FXN (ENSODEG00000003413) #9 PIP5K1B (ENSODEG00000003585) #10 ENSODEG00000003739 PABIR1 (ENSODEG00000019013) #11 TMEM252 (ENSODEG00000003841) #12 PGM5 (ENSODEG00000003917) #13 ENSODEG00000003983 #15 ENSODEG00000004467 #17 ENSODEG00000004602 #17 ENSODEG00000004711 #17 ENSODEG00000004719 KANK1 (ENSODEG00000004766) #18 DMRT1 (ENSODEG00000004898) #19 DMRT3 (ENSODEG00000004984) #20 DMRT2 (ENSODEG00000004992) #21 SMARCA2 (ENSODEG00000005452) #22 ENSODEG00000006378 #23 ENSODEG00000003492 #24 KCNV2 (ENSODEG00000003536) #25 ENSODEG00000003625 #26 RFX3 (ENSODEG00000003682) #28 GLIS3 (ENSODEG00000003731) #29 SLC1A1 (ENSODEG00000003884) #30 ENSODEG00000003949 SPATA6L (ENSODEG00000004066) #31 PLPP6 (ENSODEG00000019026) #32 CDC37L1 (ENSODEG00000004185) #33 ENSODEG00000004121 #34 RCL1 (ENSODEG00000004151) #35 JAK2 (ENSODEG00000004208) #36 ENSODEG00000004220 Guinea pig MODERN SPECIES 21 PTAR1 (ENSCPOG00000008368) APBA1 (ENSCPOG00000032780) ENTREP1 (ENSCPOG00000003236) #7 TJP2 (ENSCPOG00000021062) #8 FXN (ENSCPOG00000004293) #9 PIP5K1B (ENSCPOG00000004288) #10 PABIR1 (ENSCPOG00000003280) #11 TMEM252 (ENSCPOG00000013771) #12 PGM5 (ENSCPOG00000015031) #13 ENSCPOG00000019718 #15 DOCK8 (ENSCPOG00000008366) #17 KANK1 (ENSCPOG00000008389) #18 DMRT1 (ENSCPOG00000005909) #19 DMRT3 (ENSCPOG00000005912) #20 DMRT2 (ENSCPOG00000008452) #21 SMARCA2 (ENSCPOG00000005475) #22 VLDLR (ENSCPOG00000007685) #24 KCNV2 (ENSCPOG00000032893) #25 ENSCPOG00000008552 #26 RFX3 (ENSCPOG00000000900) #28 GLIS3 (ENSCPOG00000005523) #29 ENSCPOG00000030794 SLC1A1 (ENSCPOG00000011151) #30 PLPP6 (ENSCPOG00000012931) #32 SPATA6L (ENSCPOG00000012925) #31 CDC37L1 (ENSCPOG00000030938) #33 AK3 (ENSCPOG00000011927) #34 RCL1 (ENSCPOG00000015354) #35 JAK2 (ENSCPOG00000014653) #36 INSL6 (ENSCPOG00000002694) #37 ENSCPOG00000001365 ##37 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Kangaroo rat MODERN SPECIES 359 Mamdc2 (ENSDORG00000000884) Ptar1 (ENSDORG00000005855) Apba1 (ENSDORG00000003149) Entrep1 (ENSDORG00000001566) #7 Tjp2 (ENSDORG00000009039) #8 Fxn (ENSDORG00000027975) #9 Pip5k1b (ENSDORG00000001153) #10 Fam122a (ENSDORG00000001152) #11 Tmem252 (ENSDORG00000005477) #12 Pgm5 (ENSDORG00000005476) #13 Cbwd1 (ENSDORG00000004917) #15 Dock8 (ENSDORG00000007203) #17 Kank1 (ENSDORG00000015159) #18 ENSDORG00000006363 #19 Dmrt2 (ENSDORG00000007216) #21 Smarca2 (ENSDORG00000014832) #22 Vldlr (ENSDORG00000012954) #24 Kcnv2 (ENSDORG00000011511) #25 ENSDORG00000003628 #26 Rfx3 (ENSDORG00000013906) #28 ENSDORG00000025494 #29 Slc1a1 (ENSDORG00000010091) #30 Plpp6 (ENSDORG00000003071) #32 Cdc37l1 (ENSDORG00000023648) #33 Ak3 (ENSDORG00000010355) #34 Rcl1 (ENSDORG00000015645) #35 Jak2 (ENSDORG00000011552) #36 ENSDORG00000000109 ENSDORG00000028062 Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Lesser Egyptian jerboa MODERN SPECIES 50 Tjp2 (ENSJJAG00000003581) #8 Fxn (ENSJJAG00000022666) #9 Pip5k1b (ENSJJAG00000018154) #10 Fam122a (ENSJJAG00000009421) #11 Tmem252 (ENSJJAG00000015659) #12 Pgm5 (ENSJJAG00000022690) #13 ENSJJAG00000013817 #15 ENSJJAG00000009646 #17 ENSJJAG00000017231 #17 ENSJJAG00000015498 #17 Kank1 (ENSJJAG00000018774) #18 Dmrt1 (ENSJJAG00000016690) #19 Dmrt3 (ENSJJAG00000022573) #20 Dmrt2 (ENSJJAG00000023959) #21 ENSJJAG00000010719 Smarca2 (ENSJJAG00000010867) #22 Vldlr (ENSJJAG00000016440) #24 ENSJJAG00000000409 #23 Kcnv2 (ENSJJAG00000016782) #25 Pum3 (ENSJJAG00000012563) #26 ENSJJAG00000010263 Rfx3 (ENSJJAG00000010280) #28 ENSJJAG00000024335 Glis3 (ENSJJAG00000011399) #29 Slc1a1 (ENSJJAG00000018507) #30 ENSJJAG00000020462 Spata6l (ENSJJAG00000022941) #31 Plpp6 (ENSJJAG00000011277) #32 Cdc37l1 (ENSJJAG00000024330) #33 Ak3 (ENSJJAG00000023388) #34 ENSJJAG00000022803 #35 Muroidea ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Upper Galilee mountains blind mole rat MODERN SPECIES 1166 Dmrt1 (ENSNGAG00000001295) #19 Dmrt3 (ENSNGAG00000020423) #20 Dmrt2 (ENSNGAG00000020041) #21 ENSNGAG00000013866 Smarca2 (ENSNGAG00000000108) #22 ENSNGAG00000012912 Vldlr (ENSNGAG00000003966) #24 Kcnv2 (ENSNGAG00000020439) #25 Pum3 (ENSNGAG00000019468) #26 Rfx3 (ENSNGAG00000016470) #28 Glis3 (ENSNGAG00000006111) #29 ENSNGAG00000018137 Slc1a1 (ENSNGAG00000014723) #30 Plpp6 (ENSNGAG00000014756) #32 Spata6l (ENSNGAG00000017948) #31 Cdc37l1 (ENSNGAG00000018155) #33 Ak3 (ENSNGAG00000016647) #34 Rcl1 (ENSNGAG00000015327) #35 Jak2 (ENSNGAG00000000096) #36 Muroidea_A ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Murinae ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Mus ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 #23 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_A ANCESTRAL SPECIES 16 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 #23 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_B ANCESTRAL SPECIES 16 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 #23 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_C ANCESTRAL SPECIES 24 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 #23 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Steppe mouse MODERN SPECIES 3106 Smarca2 (ENSMSIG00000022131) #22 Gm815 (ENSMSIG00000023064) Vldlr (ENSMSIG00000023084) #24 ENSMSIG00000023160 #23 Kcnv2 (ENSMSIG00000023184) #25 Pum3 (ENSMSIG00000023194) #26 Rfx3 (ENSMSIG00000023245) #28 ENSMSIG00000023373 Glis3 (ENSMSIG00000023382) #29 spretus MODERN SPECIES 10 MGP_SPRETEiJ_G0023744 Apba1 (MGP_SPRETEiJ_G0023745) Entrep1 (MGP_SPRETEiJ_G0023746) #7 Tjp2 (MGP_SPRETEiJ_G0023747) #8 Fxn (MGP_SPRETEiJ_G0023748) #9 Pip5k1b (MGP_SPRETEiJ_G0023749) #10 Fam122a (MGP_SPRETEiJ_G0023750) #11 Tmem252 (MGP_SPRETEiJ_G0023751) #12 Pgm5 (MGP_SPRETEiJ_G0023752) #13 Foxd4 (MGP_SPRETEiJ_G0023753) #14 Cbwd1 (MGP_SPRETEiJ_G0023754) #15 Dock8 (MGP_SPRETEiJ_G0023755) #17 Kank1 (MGP_SPRETEiJ_G0023756) #18 Dmrt3 (MGP_SPRETEiJ_G0023757) #20 Dmrt2 (MGP_SPRETEiJ_G0023758) #21 Smarca2 (MGP_SPRETEiJ_G0023759) #22 MGP_SPRETEiJ_G0023760 Vldlr (MGP_SPRETEiJ_G0023761) #24 Kcnv2 (MGP_SPRETEiJ_G0023762) #25 Pum3 (MGP_SPRETEiJ_G0023763) #26 Rfx3 (MGP_SPRETEiJ_G0023764) #28 Glis3 (MGP_SPRETEiJ_G0023765) #29 Slc1a1 (MGP_SPRETEiJ_G0023766) #30 Spata6l (MGP_SPRETEiJ_G0023767) #31 Plpp6 (MGP_SPRETEiJ_G0023768) #32 Cdc37l1 (MGP_SPRETEiJ_G0023769) #33 Ak3 (MGP_SPRETEiJ_G0023770) #34 Rcl1 (MGP_SPRETEiJ_G0023771) #35 Jak2 (MGP_SPRETEiJ_G0023772) #36 Insl6 (MGP_SPRETEiJ_G0023773) #37 Rln1 (MGP_SPRETEiJ_G0023774) ##37 Mouse MODERN SPECIES 10 Entrep1 (ENSMUSG00000071604) #7 Tjp2 (ENSMUSG00000024812) #8 Fxn (ENSMUSG00000059363) #9 Pip5k1b (ENSMUSG00000024867) #10 Fam122a (ENSMUSG00000074922) #11 Tmem252 (ENSMUSG00000048572) #12 Pgm5 (ENSMUSG00000041731) #13 Gm10053 (ENSMUSG00000058927) Foxd4 (ENSMUSG00000051490) #14 Cbwd1 (ENSMUSG00000024878) #15 Dock8 (ENSMUSG00000052085) #17 Kank1 (ENSMUSG00000032702) #18 Dmrt1 (ENSMUSG00000024837) #19 Dmrt3 (ENSMUSG00000042372) #20 Dmrt2 (ENSMUSG00000048138) #21 Smarca2 (ENSMUSG00000024921) #22 Gm815 (ENSMUSG00000074913) Vldlr (ENSMUSG00000024924) #24 Kcnv2 (ENSMUSG00000047298) #25 Pum3 (ENSMUSG00000041360) #26 Rfx3 (ENSMUSG00000040929) #28 Glis3 (ENSMUSG00000052942) #29 Slc1a1 (ENSMUSG00000024935) #30 Spata6l (ENSMUSG00000064202) #31 Plpp6 (ENSMUSG00000040105) #32 Cdc37l1 (ENSMUSG00000024780) #33 Ak3 (ENSMUSG00000024782) #34 Rcl1 (ENSMUSG00000024785) #35 Jak2 (ENSMUSG00000024789) #36 Insl6 (ENSMUSG00000050957) #37 Rln1 (ENSMUSG00000039097) ##37 Ryukyu mouse MODERN SPECIES 10 Apba1 (MGP_CAROLIEiJ_G0022826) Entrep1 (MGP_CAROLIEiJ_G0022827) #7 Tjp2 (MGP_CAROLIEiJ_G0022828) #8 Fxn (MGP_CAROLIEiJ_G0022829) #9 Pip5k1b (MGP_CAROLIEiJ_G0022830) #10 Fam122a (MGP_CAROLIEiJ_G0022831) #11 Tmem252 (MGP_CAROLIEiJ_G0022832) #12 Pgm5 (MGP_CAROLIEiJ_G0022833) #13 Foxd4 (MGP_CAROLIEiJ_G0022834) #14 Cbwd1 (MGP_CAROLIEiJ_G0022835) #15 Dock8 (MGP_CAROLIEiJ_G0022836) #17 Kank1 (MGP_CAROLIEiJ_G0022837) #18 Dmrt1 (MGP_CAROLIEiJ_G0022838) #19 Dmrt3 (MGP_CAROLIEiJ_G0022839) #20 Dmrt2 (MGP_CAROLIEiJ_G0022840) #21 Smarca2 (MGP_CAROLIEiJ_G0022841) #22 MGP_CAROLIEiJ_G0022842 Vldlr (MGP_CAROLIEiJ_G0022843) #24 Kcnv2 (MGP_CAROLIEiJ_G0022844) #25 Pum3 (MGP_CAROLIEiJ_G0022845) #26 Rfx3 (MGP_CAROLIEiJ_G0022846) #28 Glis3 (MGP_CAROLIEiJ_G0022847) #29 Slc1a1 (MGP_CAROLIEiJ_G0022848) #30 Spata6l (MGP_CAROLIEiJ_G0022849) #31 Plpp6 (MGP_CAROLIEiJ_G0022850) #32 Cdc37l1 (MGP_CAROLIEiJ_G0022851) #33 Ak3 (MGP_CAROLIEiJ_G0022852) #34 Rcl1 (MGP_CAROLIEiJ_G0022853) #35 Jak2 (MGP_CAROLIEiJ_G0022854) #36 Insl6 (MGP_CAROLIEiJ_G0022855) #37 Rln1 (MGP_CAROLIEiJ_G0022856) ##37 Shrew mouse MODERN SPECIES Ptar1 (MGP_PahariEiJ_G0014318) Apba1 (MGP_PahariEiJ_G0014319) Entrep1 (MGP_PahariEiJ_G0014320) #7 Tjp2 (MGP_PahariEiJ_G0014321) #8 MGP_PahariEiJ_G0014322 #9 Fam122a (MGP_PahariEiJ_G0014324) #11 Tmem252 (MGP_PahariEiJ_G0014325) #12 Pgm5 (MGP_PahariEiJ_G0014326) #13 Foxd4 (MGP_PahariEiJ_G0014327) #14 Cbwd1 (MGP_PahariEiJ_G0014328) #15 Dock8 (MGP_PahariEiJ_G0014329) #17 Kank1 (MGP_PahariEiJ_G0014330) #18 Dmrt1 (MGP_PahariEiJ_G0014331) #19 Dmrt3 (MGP_PahariEiJ_G0014332) #20 Dmrt2 (MGP_PahariEiJ_G0014333) #21 Smarca2 (MGP_PahariEiJ_G0014334) #22 MGP_PahariEiJ_G0014335 Vldlr (MGP_PahariEiJ_G0014336) #24 Kcnv2 (MGP_PahariEiJ_G0014337) #25 Pum3 (MGP_PahariEiJ_G0014338) #26 Rfx3 (MGP_PahariEiJ_G0014339) #28 Glis3 (MGP_PahariEiJ_G0014340) #29 Slc1a1 (MGP_PahariEiJ_G0014341) #30 Spata6l (MGP_PahariEiJ_G0014342) #31 Plpp6 (MGP_PahariEiJ_G0014343) #32 Cdc37l1 (MGP_PahariEiJ_G0014344) #33 Ak3 (MGP_PahariEiJ_G0014345) #34 Rcl1 (MGP_PahariEiJ_G0014346) #35 Jak2 (MGP_PahariEiJ_G0014347) #36 Insl6 (MGP_PahariEiJ_G0014348) #37 Rln1 (MGP_PahariEiJ_G0014349) ##37 Rat MODERN SPECIES Tjp2 (ENSRNOG00000015030) #8 Fxn (ENSRNOG00000015213) #9 Pip5k1b (ENSRNOG00000015232) #10 Pabir1 (ENSRNOG00000051051) #11 Tmem252 (ENSRNOG00000025476) #12 Pgm5 (ENSRNOG00000015406) #13 Foxd4 (ENSRNOG00000050486) #14 Zng1a (ENSRNOG00000015516) #15 Dock8 (ENSRNOG00000015894) #17 Hmgb1-ps4 (ENSRNOG00000065098) Kank1 (ENSRNOG00000016023) #18 Dmrt1 (ENSRNOG00000016075) #19 Dmrt3 (ENSRNOG00000016284) #20 Dmrt2 (ENSRNOG00000016301) #21 ENSRNOG00000062555 Smarca2 (ENSRNOG00000011931) #22 ENSRNOG00000069446 #23 Vldlr (ENSRNOG00000027491) #24 ENSRNOG00000062591 Kcnv2 (ENSRNOG00000012566) #25 Pum3 (ENSRNOG00000012574) #26 Rfx3 (ENSRNOG00000014486) #28 ENSRNOG00000066761 Glis3 (ENSRNOG00000014768) #29 Slc1a1 (ENSRNOG00000014816) #30 ENSRNOG00000065811 Spata6l (ENSRNOG00000015137) #31 Plpp6 (ENSRNOG00000015268) #32 RGD1565057 (ENSRNOG00000069618) Cdc37l1 (ENSRNOG00000010967) #33 Ak3 (ENSRNOG00000052506) #34 Cricetidae ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Northern American deer mouse MODERN SPECIES Ptar1 (ENSPEMG00000018036) Apba1 (ENSPEMG00000010980) Entrep1 (ENSPEMG00000020060) #7 Tjp2 (ENSPEMG00000020250) #8 ENSPEMG00000019884 #9 Pip5k1b (ENSPEMG00000020095) #10 Fam122a (ENSPEMG00000012823) #11 Tmem252 (ENSPEMG00000007137) #12 Pgm5 (ENSPEMG00000020205) #13 Cbwd1 (ENSPEMG00000000396) #15 Dock8 (ENSPEMG00000014001) #17 Kank1 (ENSPEMG00000013916) #18 Dmrt1 (ENSPEMG00000019943) #19 Dmrt3 (ENSPEMG00000019990) #20 Dmrt2 (ENSPEMG00000019767) #21 Smarca2 (ENSPEMG00000019821) #22 ENSPEMG00000021666 #23 Vldlr (ENSPEMG00000022250) #24 Kcnv2 (ENSPEMG00000020138) #25 ENSPEMG00000030423 ENSPEMG00000019340 #26 Rfx3 (ENSPEMG00000019731) #28 Glis3 (ENSPEMG00000020002) #29 ENSPEMG00000004286 Slc1a1 (ENSPEMG00000009611) #30 ENSPEMG00000021571 Spata6l (ENSPEMG00000023122) #31 Plpp6 (ENSPEMG00000007181) #32 Cdc37l1 (ENSPEMG00000000344) #33 Ak3 (ENSPEMG00000022781) #34 Rcl1 (ENSPEMG00000023275) #35 Prairie vole MODERN SPECIES 16 Apba1 (ENSMOCG00000009892) Entrep1 (ENSMOCG00000018310) #7 Tjp2 (ENSMOCG00000012468) #8 Fxn (ENSMOCG00000014625) #9 Pip5k1b (ENSMOCG00000017594) #10 ENSMOCG00000010285 Fam122a (ENSMOCG00000001051) #11 Tmem252 (ENSMOCG00000017938) #12 Pgm5 (ENSMOCG00000011710) #13 Cbwd1 (ENSMOCG00000015974) #15 Dock8 (ENSMOCG00000014249) #17 Kank1 (ENSMOCG00000020725) #18 ENSMOCG00000017971 #19 Dmrt3 (ENSMOCG00000015270) #20 Dmrt2 (ENSMOCG00000016701) #21 Smarca2 (ENSMOCG00000001611) #22 Vldlr (ENSMOCG00000004269) #24 Kcnv2 (ENSMOCG00000014872) #25 ENSMOCG00000019519 #26 Rfx3 (ENSMOCG00000018931) #28 Glis3 (ENSMOCG00000009953) #29 Slc1a1 (ENSMOCG00000017507) #30 ENSMOCG00000018225 Spata6l (ENSMOCG00000022082) #31 Plpp6 (ENSMOCG00000001135) #32 Cdc37l1 (ENSMOCG00000018341) #33 Ak3 (ENSMOCG00000010856) #34 Rcl1 (ENSMOCG00000012145) #35 Jak2 (ENSMOCG00000013580) #36 Insl6 (ENSMOCG00000015208) #37 Rln1 (ENSMOCG00000012108) ##37 Cricetinae ANCESTRAL SPECIES 2 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b #7 ENSGT00940000158634 #8 ENSGT00390000005811 #9 ENSGT00940000156639 #10 ENSGT00390000015476.d.b #11 ENSGT00390000005250 #12 ENSGT00940000158126 #13 ENSGT00940000163353 #14 ENSGT00640000091523 #15 ENSGT00940000155876 #17 ENSGT00940000154886.a.a #18 ENSGT00940000156489.n #19 ENSGT00940000160420 #20 ENSGT00940000156282.a.a #21 ENSGT00940000154821.b #22 ENSGT00520000061590 #23 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #28 ENSGT00940000156896 #29 ENSGT00940000155397.b #30 ENSGT00900000143153 ENSGT00530000063821.b.b #31 ENSGT00940000160907 #32 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b #37 Chinese hamster chok1gshd MODERN SPECIES 401 Entrep1 (ENSCGRG00001002309) #7 Tjp2 (ENSCGRG00001022408) #8 Fxn (ENSCGRG00001003906) #9 ENSCGRG00001013409 Pip5k1b (ENSCGRG00001017408) #10 Fam122a (ENSCGRG00001012685) #11 Tmem252 (ENSCGRG00001019081) #12 Pgm5 (ENSCGRG00001020037) #13 Foxd4 (ENSCGRG00001006276) #14 Cbwd1 (ENSCGRG00001020851) #15 Dock8 (ENSCGRG00001013079) #17 Kank1 (ENSCGRG00001020355) #18 Dmrt1 (ENSCGRG00001000625) #19 Dmrt3 (ENSCGRG00001005036) #20 Dmrt2 (ENSCGRG00001007562) #21 Smarca2 (ENSCGRG00001002323) #22 Vldlr (ENSCGRG00001014399) #24 ENSCGRG00001017895 #23 Kcnv2 (ENSCGRG00001018140) #25 Pum3 (ENSCGRG00001016402) #26 Rfx3 (ENSCGRG00001021745) #28 Glis3 (ENSCGRG00001014233) #29 Slc1a1 (ENSCGRG00001022336) #30 ENSCGRG00001023585 Spata6l (ENSCGRG00001002881) #31 Plpp6 (ENSCGRG00001012981) #32 Cdc37l1 (ENSCGRG00001000264) #33 AK3 (ENSCGRG00001007296) #34 Rcl1 (ENSCGRG00001013748) #35 Jak2 (ENSCGRG00001015840) #36 Insl6 (ENSCGRG00001020673) #37 Golden Hamster DUPLICATION Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 617 Tjp2 (ENSMAUG00000008987) #8 Fxn (ENSMAUG00000009158) #9 Pip5k1b (ENSMAUG00000010912) #10 Fam122a (ENSMAUG00000002386) #11 Tmem252 (ENSMAUG00000008962) #12 Pgm5 (ENSMAUG00000009185) #13 Cbwd1 (ENSMAUG00000009107) #15 ENSMAUG00000009538 #17 ENSMAUG00000009191 #17 Kank1 (ENSMAUG00000009263) #18 ENSMAUG00000008975 #19 Dmrt3 (ENSMAUG00000008904) #20 Dmrt2 (ENSMAUG00000010038) #21 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #28 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #32 Spata6l (ENSMAUG00000010530) #31 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) #37 Rln1 (ENSMAUG00000008598) ##37 Plgrkt (ENSMAUG00000007601) Cd274 (ENSMAUG00000008788) Golden Hamster MODERN SPECIES 617 Entrep1 (ENSMAUG00000010196) #7 Tjp2 (ENSMAUG00000008987) #8 Fxn (ENSMAUG00000009158) #9 Pip5k1b (ENSMAUG00000010912) #10 Fam122a (ENSMAUG00000002386) #11 Tmem252 (ENSMAUG00000008962) #12 Pgm5 (ENSMAUG00000009185) #13 Cbwd1 (ENSMAUG00000009107) #15 ENSMAUG00000009538 #17 ENSMAUG00000009191 #17 Kank1 (ENSMAUG00000009263) #18 ENSMAUG00000008975 #19 Dmrt3 (ENSMAUG00000008904) #20 Dmrt2 (ENSMAUG00000010038) #21 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #28 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #32 Spata6l (ENSMAUG00000010530) #31 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) #37 Rln1 (ENSMAUG00000008598) ##37 Plgrkt (ENSMAUG00000007601) Golden Hamster MODERN SPECIES 617 Apba1 (ENSMAUG00000009290) Entrep1 (ENSMAUG00000010196) #7 Tjp2 (ENSMAUG00000008987) #8 Fxn (ENSMAUG00000009158) #9 Pip5k1b (ENSMAUG00000010912) #10 Fam122a (ENSMAUG00000002386) #11 Tmem252 (ENSMAUG00000008962) #12 Pgm5 (ENSMAUG00000009185) #13 Cbwd1 (ENSMAUG00000009107) #15 ENSMAUG00000009538 #17 ENSMAUG00000009191 #17 Kank1 (ENSMAUG00000009263) #18 ENSMAUG00000008975 #19 Dmrt3 (ENSMAUG00000008904) #20 Dmrt2 (ENSMAUG00000010038) #21 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #28 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #32 Spata6l (ENSMAUG00000010530) #31 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) #37 Rln1 (ENSMAUG00000008598) ##37 Lagomorpha ANCESTRAL SPECIES ENSGT00940000154821.b #22 Pika MODERN SPECIES 4399 SMARCA2 (ENSOPRG00000013474) #22 Rabbit MODERN SPECIES ENSOCUG00000014142 #12 PGM5 (ENSOCUG00000014125) #13 ENSOCUG00000010467 #14 ENSOCUG00000000733 #15 DOCK8 (ENSOCUG00000003208) #17 KANK1 (ENSOCUG00000004753) #18 ENSOCUG00000036685 DMRT3 (ENSOCUG00000004582) #20 ENSOCUG00000027863 DMRT2 (ENSOCUG00000003299) #21 ENSOCUG00000037388 ENSOCUG00000034834 ENSOCUG00000023438 ENSOCUG00000035677 ENSOCUG00000000241 SMARCA2 (ENSOCUG00000006320) #22 ENSOCUG00000022775 VLDLR (ENSOCUG00000002231) #24 KCNV2 (ENSOCUG00000004385) #25 ENSOCUG00000004189 #26 ENSOCUG00000039572 RFX3 (ENSOCUG00000014086) #28 ENSOCUG00000023393 ENSOCUG00000027590 GLIS3 (ENSOCUG00000023004) #29 ENSOCUG00000036407 ENSOCUG00000013264 #30 ENSOCUG00000026987 ENSOCUG00000022202 #30 PLPP6 (ENSOCUG00000003465) #32 SPATA6L (ENSOCUG00000003455) #31