Euarchontoglires_A ANCESTRAL SPECIES 10 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT00940000164013 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00900000143153 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Glires ANCESTRAL SPECIES 9 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT00940000164013 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Rodentia ANCESTRAL SPECIES 9 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Rodentia_B ANCESTRAL SPECIES 6 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Myomorpha ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Muroidea ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Upper Galilee mountains blind mole rat MODERN SPECIES 1166 Dmrt1 (ENSNGAG00000001295) #18 Dmrt3 (ENSNGAG00000020423) #19 Dmrt2 (ENSNGAG00000020041) #20 ENSNGAG00000013866 #21 Smarca2 (ENSNGAG00000000108) #22 ENSNGAG00000012912 #23 Vldlr (ENSNGAG00000003966) #24 Kcnv2 (ENSNGAG00000020439) #25 Pum3 (ENSNGAG00000019468) #26 Rfx3 (ENSNGAG00000016470) #27 Glis3 (ENSNGAG00000006111) #28 ENSNGAG00000018137 #29 Slc1a1 (ENSNGAG00000014723) #30 Plpp6 (ENSNGAG00000014756) #31 Spata6l (ENSNGAG00000017948) #32 Cdc37l1 (ENSNGAG00000018155) #33 Ak3 (ENSNGAG00000016647) #34 Rcl1 (ENSNGAG00000015327) #35 Jak2 (ENSNGAG00000000096) #36 Muroidea_A ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Murinae ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Mus ANCESTRAL SPECIES ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_A ANCESTRAL SPECIES 16 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_B ANCESTRAL SPECIES 16 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Mus_C ANCESTRAL SPECIES 24 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00900000143396 ENSGT00940000155460 #24 ENSGT00520000061590 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 Steppe mouse MODERN SPECIES 3106 Smarca2 (ENSMSIG00000022131) #22 Gm815 (ENSMSIG00000023064) Vldlr (ENSMSIG00000023084) #24 ENSMSIG00000023160 Kcnv2 (ENSMSIG00000023184) #25 Pum3 (ENSMSIG00000023194) #26 Rfx3 (ENSMSIG00000023245) #27 ENSMSIG00000023373 Glis3 (ENSMSIG00000023382) #28 spretus MODERN SPECIES 10 MGP_SPRETEiJ_G0023744 Apba1 (MGP_SPRETEiJ_G0023745) Entrep1 (MGP_SPRETEiJ_G0023746) Tjp2 (MGP_SPRETEiJ_G0023747) Fxn (MGP_SPRETEiJ_G0023748) Pip5k1b (MGP_SPRETEiJ_G0023749) Fam122a (MGP_SPRETEiJ_G0023750) Tmem252 (MGP_SPRETEiJ_G0023751) Pgm5 (MGP_SPRETEiJ_G0023752) Foxd4 (MGP_SPRETEiJ_G0023753) Cbwd1 (MGP_SPRETEiJ_G0023754) Dock8 (MGP_SPRETEiJ_G0023755) Kank1 (MGP_SPRETEiJ_G0023756) Dmrt3 (MGP_SPRETEiJ_G0023757) #19 Dmrt2 (MGP_SPRETEiJ_G0023758) #20 Smarca2 (MGP_SPRETEiJ_G0023759) #22 MGP_SPRETEiJ_G0023760 Vldlr (MGP_SPRETEiJ_G0023761) #24 Kcnv2 (MGP_SPRETEiJ_G0023762) #25 Pum3 (MGP_SPRETEiJ_G0023763) #26 Rfx3 (MGP_SPRETEiJ_G0023764) #27 Glis3 (MGP_SPRETEiJ_G0023765) #28 Slc1a1 (MGP_SPRETEiJ_G0023766) #30 Spata6l (MGP_SPRETEiJ_G0023767) #32 Plpp6 (MGP_SPRETEiJ_G0023768) #31 Cdc37l1 (MGP_SPRETEiJ_G0023769) #33 Ak3 (MGP_SPRETEiJ_G0023770) #34 Rcl1 (MGP_SPRETEiJ_G0023771) #35 Jak2 (MGP_SPRETEiJ_G0023772) #36 Insl6 (MGP_SPRETEiJ_G0023773) Rln1 (MGP_SPRETEiJ_G0023774) Mouse MODERN SPECIES 10 Entrep1 (ENSMUSG00000071604) Tjp2 (ENSMUSG00000024812) Fxn (ENSMUSG00000059363) Pip5k1b (ENSMUSG00000024867) Fam122a (ENSMUSG00000074922) Tmem252 (ENSMUSG00000048572) Pgm5 (ENSMUSG00000041731) Gm10053 (ENSMUSG00000058927) Foxd4 (ENSMUSG00000051490) Cbwd1 (ENSMUSG00000024878) Dock8 (ENSMUSG00000052085) Kank1 (ENSMUSG00000032702) Dmrt1 (ENSMUSG00000024837) #18 Dmrt3 (ENSMUSG00000042372) #19 Dmrt2 (ENSMUSG00000048138) #20 Smarca2 (ENSMUSG00000024921) #22 Gm815 (ENSMUSG00000074913) Vldlr (ENSMUSG00000024924) #24 Kcnv2 (ENSMUSG00000047298) #25 Pum3 (ENSMUSG00000041360) #26 Rfx3 (ENSMUSG00000040929) #27 Glis3 (ENSMUSG00000052942) #28 Slc1a1 (ENSMUSG00000024935) #30 Spata6l (ENSMUSG00000064202) #32 Plpp6 (ENSMUSG00000040105) #31 Cdc37l1 (ENSMUSG00000024780) #33 Ak3 (ENSMUSG00000024782) #34 Rcl1 (ENSMUSG00000024785) #35 Jak2 (ENSMUSG00000024789) #36 Insl6 (ENSMUSG00000050957) Rln1 (ENSMUSG00000039097) Ryukyu mouse MODERN SPECIES 10 Apba1 (MGP_CAROLIEiJ_G0022826) Entrep1 (MGP_CAROLIEiJ_G0022827) Tjp2 (MGP_CAROLIEiJ_G0022828) Fxn (MGP_CAROLIEiJ_G0022829) Pip5k1b (MGP_CAROLIEiJ_G0022830) Fam122a (MGP_CAROLIEiJ_G0022831) Tmem252 (MGP_CAROLIEiJ_G0022832) Pgm5 (MGP_CAROLIEiJ_G0022833) Foxd4 (MGP_CAROLIEiJ_G0022834) Cbwd1 (MGP_CAROLIEiJ_G0022835) Dock8 (MGP_CAROLIEiJ_G0022836) Kank1 (MGP_CAROLIEiJ_G0022837) Dmrt1 (MGP_CAROLIEiJ_G0022838) #18 Dmrt3 (MGP_CAROLIEiJ_G0022839) #19 Dmrt2 (MGP_CAROLIEiJ_G0022840) #20 Smarca2 (MGP_CAROLIEiJ_G0022841) #22 MGP_CAROLIEiJ_G0022842 Vldlr (MGP_CAROLIEiJ_G0022843) #24 Kcnv2 (MGP_CAROLIEiJ_G0022844) #25 Pum3 (MGP_CAROLIEiJ_G0022845) #26 Rfx3 (MGP_CAROLIEiJ_G0022846) #27 Glis3 (MGP_CAROLIEiJ_G0022847) #28 Slc1a1 (MGP_CAROLIEiJ_G0022848) #30 Spata6l (MGP_CAROLIEiJ_G0022849) #32 Plpp6 (MGP_CAROLIEiJ_G0022850) #31 Cdc37l1 (MGP_CAROLIEiJ_G0022851) #33 Ak3 (MGP_CAROLIEiJ_G0022852) #34 Rcl1 (MGP_CAROLIEiJ_G0022853) #35 Jak2 (MGP_CAROLIEiJ_G0022854) #36 Insl6 (MGP_CAROLIEiJ_G0022855) Rln1 (MGP_CAROLIEiJ_G0022856) Shrew mouse MODERN SPECIES Ptar1 (MGP_PahariEiJ_G0014318) Apba1 (MGP_PahariEiJ_G0014319) Entrep1 (MGP_PahariEiJ_G0014320) Tjp2 (MGP_PahariEiJ_G0014321) MGP_PahariEiJ_G0014322 Fam122a (MGP_PahariEiJ_G0014324) Tmem252 (MGP_PahariEiJ_G0014325) Pgm5 (MGP_PahariEiJ_G0014326) Foxd4 (MGP_PahariEiJ_G0014327) Cbwd1 (MGP_PahariEiJ_G0014328) Dock8 (MGP_PahariEiJ_G0014329) Kank1 (MGP_PahariEiJ_G0014330) Dmrt1 (MGP_PahariEiJ_G0014331) #18 Dmrt3 (MGP_PahariEiJ_G0014332) #19 Dmrt2 (MGP_PahariEiJ_G0014333) #20 Smarca2 (MGP_PahariEiJ_G0014334) #22 MGP_PahariEiJ_G0014335 Vldlr (MGP_PahariEiJ_G0014336) #24 Kcnv2 (MGP_PahariEiJ_G0014337) #25 Pum3 (MGP_PahariEiJ_G0014338) #26 Rfx3 (MGP_PahariEiJ_G0014339) #27 Glis3 (MGP_PahariEiJ_G0014340) #28 Slc1a1 (MGP_PahariEiJ_G0014341) #30 Spata6l (MGP_PahariEiJ_G0014342) #32 Plpp6 (MGP_PahariEiJ_G0014343) #31 Cdc37l1 (MGP_PahariEiJ_G0014344) #33 Ak3 (MGP_PahariEiJ_G0014345) #34 Rcl1 (MGP_PahariEiJ_G0014346) #35 Jak2 (MGP_PahariEiJ_G0014347) #36 Insl6 (MGP_PahariEiJ_G0014348) Rln1 (MGP_PahariEiJ_G0014349) Rat MODERN SPECIES Tjp2 (ENSRNOG00000015030) Fxn (ENSRNOG00000015213) Pip5k1b (ENSRNOG00000015232) Pabir1 (ENSRNOG00000051051) Tmem252 (ENSRNOG00000025476) Pgm5 (ENSRNOG00000015406) Foxd4 (ENSRNOG00000050486) Zng1a (ENSRNOG00000015516) Dock8 (ENSRNOG00000015894) Hmgb1-ps4 (ENSRNOG00000065098) Kank1 (ENSRNOG00000016023) Dmrt1 (ENSRNOG00000016075) #18 Dmrt3 (ENSRNOG00000016284) #19 Dmrt2 (ENSRNOG00000016301) #20 ENSRNOG00000062555 Smarca2 (ENSRNOG00000011931) #22 ENSRNOG00000069446 Vldlr (ENSRNOG00000027491) #24 ENSRNOG00000062591 Kcnv2 (ENSRNOG00000012566) #25 Pum3 (ENSRNOG00000012574) #26 Rfx3 (ENSRNOG00000014486) #27 ENSRNOG00000066761 Glis3 (ENSRNOG00000014768) #28 Slc1a1 (ENSRNOG00000014816) #30 ENSRNOG00000065811 #29 Spata6l (ENSRNOG00000015137) #32 Plpp6 (ENSRNOG00000015268) #31 RGD1565057 (ENSRNOG00000069618) Cdc37l1 (ENSRNOG00000010967) #33 Ak3 (ENSRNOG00000052506) #34 Cricetidae ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Northern American deer mouse MODERN SPECIES Ptar1 (ENSPEMG00000018036) Apba1 (ENSPEMG00000010980) Entrep1 (ENSPEMG00000020060) Tjp2 (ENSPEMG00000020250) ENSPEMG00000019884 Pip5k1b (ENSPEMG00000020095) Fam122a (ENSPEMG00000012823) Tmem252 (ENSPEMG00000007137) Pgm5 (ENSPEMG00000020205) Cbwd1 (ENSPEMG00000000396) Dock8 (ENSPEMG00000014001) Kank1 (ENSPEMG00000013916) Dmrt1 (ENSPEMG00000019943) #18 Dmrt3 (ENSPEMG00000019990) #19 Dmrt2 (ENSPEMG00000019767) #20 Smarca2 (ENSPEMG00000019821) #22 ENSPEMG00000021666 Vldlr (ENSPEMG00000022250) #24 Kcnv2 (ENSPEMG00000020138) #25 ENSPEMG00000030423 ENSPEMG00000019340 #26 Rfx3 (ENSPEMG00000019731) #27 Glis3 (ENSPEMG00000020002) #28 ENSPEMG00000004286 Slc1a1 (ENSPEMG00000009611) #30 ENSPEMG00000021571 #29 Spata6l (ENSPEMG00000023122) #32 Plpp6 (ENSPEMG00000007181) #31 Cdc37l1 (ENSPEMG00000000344) #33 Ak3 (ENSPEMG00000022781) #34 Rcl1 (ENSPEMG00000023275) #35 Prairie vole MODERN SPECIES 16 Apba1 (ENSMOCG00000009892) Entrep1 (ENSMOCG00000018310) Tjp2 (ENSMOCG00000012468) Fxn (ENSMOCG00000014625) Pip5k1b (ENSMOCG00000017594) ENSMOCG00000010285 Fam122a (ENSMOCG00000001051) Tmem252 (ENSMOCG00000017938) Pgm5 (ENSMOCG00000011710) Cbwd1 (ENSMOCG00000015974) Dock8 (ENSMOCG00000014249) Kank1 (ENSMOCG00000020725) ENSMOCG00000017971 #18 Dmrt3 (ENSMOCG00000015270) #19 Dmrt2 (ENSMOCG00000016701) #20 Smarca2 (ENSMOCG00000001611) #22 Vldlr (ENSMOCG00000004269) #24 Kcnv2 (ENSMOCG00000014872) #25 ENSMOCG00000019519 #26 Rfx3 (ENSMOCG00000018931) #27 Glis3 (ENSMOCG00000009953) #28 Slc1a1 (ENSMOCG00000017507) #30 ENSMOCG00000018225 #29 Spata6l (ENSMOCG00000022082) #32 Plpp6 (ENSMOCG00000001135) #31 Cdc37l1 (ENSMOCG00000018341) #33 Ak3 (ENSMOCG00000010856) #34 Rcl1 (ENSMOCG00000012145) #35 Jak2 (ENSMOCG00000013580) #36 Insl6 (ENSMOCG00000015208) Rln1 (ENSMOCG00000012108) Cricetinae ANCESTRAL SPECIES 2 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Chinese hamster chok1gshd MODERN SPECIES 401 Entrep1 (ENSCGRG00001002309) Tjp2 (ENSCGRG00001022408) Fxn (ENSCGRG00001003906) ENSCGRG00001013409 Pip5k1b (ENSCGRG00001017408) Fam122a (ENSCGRG00001012685) Tmem252 (ENSCGRG00001019081) Pgm5 (ENSCGRG00001020037) Foxd4 (ENSCGRG00001006276) Cbwd1 (ENSCGRG00001020851) Dock8 (ENSCGRG00001013079) Kank1 (ENSCGRG00001020355) Dmrt1 (ENSCGRG00001000625) #18 Dmrt3 (ENSCGRG00001005036) #19 Dmrt2 (ENSCGRG00001007562) #20 Smarca2 (ENSCGRG00001002323) #22 Vldlr (ENSCGRG00001014399) #24 ENSCGRG00001017895 Kcnv2 (ENSCGRG00001018140) #25 Pum3 (ENSCGRG00001016402) #26 Rfx3 (ENSCGRG00001021745) #27 Glis3 (ENSCGRG00001014233) #28 Slc1a1 (ENSCGRG00001022336) #30 ENSCGRG00001023585 #29 Spata6l (ENSCGRG00001002881) #32 Plpp6 (ENSCGRG00001012981) #31 Cdc37l1 (ENSCGRG00001000264) #33 AK3 (ENSCGRG00001007296) #34 Rcl1 (ENSCGRG00001013748) #35 Jak2 (ENSCGRG00001015840) #36 Insl6 (ENSCGRG00001020673) Golden Hamster DUPLICATION Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 617 Tjp2 (ENSMAUG00000008987) Fxn (ENSMAUG00000009158) Pip5k1b (ENSMAUG00000010912) Fam122a (ENSMAUG00000002386) Tmem252 (ENSMAUG00000008962) Pgm5 (ENSMAUG00000009185) Cbwd1 (ENSMAUG00000009107) ENSMAUG00000009538 ENSMAUG00000009191 Kank1 (ENSMAUG00000009263) ENSMAUG00000008975 #18 Dmrt3 (ENSMAUG00000008904) #19 Dmrt2 (ENSMAUG00000010038) #20 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #27 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #31 Spata6l (ENSMAUG00000010530) #32 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) Rln1 (ENSMAUG00000008598) Plgrkt (ENSMAUG00000007601) Cd274 (ENSMAUG00000008788) Golden Hamster MODERN SPECIES 617 Entrep1 (ENSMAUG00000010196) Tjp2 (ENSMAUG00000008987) Fxn (ENSMAUG00000009158) Pip5k1b (ENSMAUG00000010912) Fam122a (ENSMAUG00000002386) Tmem252 (ENSMAUG00000008962) Pgm5 (ENSMAUG00000009185) Cbwd1 (ENSMAUG00000009107) ENSMAUG00000009538 ENSMAUG00000009191 Kank1 (ENSMAUG00000009263) ENSMAUG00000008975 #18 Dmrt3 (ENSMAUG00000008904) #19 Dmrt2 (ENSMAUG00000010038) #20 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #27 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #31 Spata6l (ENSMAUG00000010530) #32 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) Rln1 (ENSMAUG00000008598) Plgrkt (ENSMAUG00000007601) Golden Hamster MODERN SPECIES 617 Apba1 (ENSMAUG00000009290) Entrep1 (ENSMAUG00000010196) Tjp2 (ENSMAUG00000008987) Fxn (ENSMAUG00000009158) Pip5k1b (ENSMAUG00000010912) Fam122a (ENSMAUG00000002386) Tmem252 (ENSMAUG00000008962) Pgm5 (ENSMAUG00000009185) Cbwd1 (ENSMAUG00000009107) ENSMAUG00000009538 ENSMAUG00000009191 Kank1 (ENSMAUG00000009263) ENSMAUG00000008975 #18 Dmrt3 (ENSMAUG00000008904) #19 Dmrt2 (ENSMAUG00000010038) #20 ENSMAUG00000010070 #22 ENSMAUG00000008807 #22 ENSMAUG00000008613 #22 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #25 Pum3 (ENSMAUG00000009733) #26 Rfx3 (ENSMAUG00000009987) #27 Slc1a1 (ENSMAUG00000009046) #30 Plpp6 (ENSMAUG00000001915) #31 Spata6l (ENSMAUG00000010530) #32 Cdc37l1 (ENSMAUG00000008847) #33 Ak3 (ENSMAUG00000008253) #34 Rcl1 (ENSMAUG00000008922) #35 Jak2 (ENSMAUG00000008571) #36 Insl6 (ENSMAUG00000008553) Rln1 (ENSMAUG00000008598) Lesser Egyptian jerboa MODERN SPECIES 50 Tjp2 (ENSJJAG00000003581) Fxn (ENSJJAG00000022666) Pip5k1b (ENSJJAG00000018154) Fam122a (ENSJJAG00000009421) Tmem252 (ENSJJAG00000015659) Pgm5 (ENSJJAG00000022690) ENSJJAG00000013817 ENSJJAG00000009646 ENSJJAG00000017231 ENSJJAG00000015498 Kank1 (ENSJJAG00000018774) Dmrt1 (ENSJJAG00000016690) #18 Dmrt3 (ENSJJAG00000022573) #19 Dmrt2 (ENSJJAG00000023959) #20 ENSJJAG00000010719 Smarca2 (ENSJJAG00000010867) #22 Vldlr (ENSJJAG00000016440) #24 ENSJJAG00000000409 Kcnv2 (ENSJJAG00000016782) #25 Pum3 (ENSJJAG00000012563) #26 ENSJJAG00000010263 Rfx3 (ENSJJAG00000010280) #27 ENSJJAG00000024335 Glis3 (ENSJJAG00000011399) #28 Slc1a1 (ENSJJAG00000018507) #30 ENSJJAG00000020462 #29 Spata6l (ENSJJAG00000022941) #32 Plpp6 (ENSJJAG00000011277) #31 Cdc37l1 (ENSJJAG00000024330) #33 Ak3 (ENSJJAG00000023388) #34 ENSJJAG00000022803 #35 Kangaroo rat MODERN SPECIES 359 Mamdc2 (ENSDORG00000000884) Ptar1 (ENSDORG00000005855) Apba1 (ENSDORG00000003149) Entrep1 (ENSDORG00000001566) Tjp2 (ENSDORG00000009039) Fxn (ENSDORG00000027975) Pip5k1b (ENSDORG00000001153) Fam122a (ENSDORG00000001152) Tmem252 (ENSDORG00000005477) Pgm5 (ENSDORG00000005476) Cbwd1 (ENSDORG00000004917) Dock8 (ENSDORG00000007203) Kank1 (ENSDORG00000015159) ENSDORG00000006363 #18 Dmrt2 (ENSDORG00000007216) #20 Smarca2 (ENSDORG00000014832) #22 Vldlr (ENSDORG00000012954) #24 Kcnv2 (ENSDORG00000011511) #25 ENSDORG00000003628 #26 Rfx3 (ENSDORG00000013906) #27 ENSDORG00000025494 #28 Slc1a1 (ENSDORG00000010091) #30 Plpp6 (ENSDORG00000003071) #31 Cdc37l1 (ENSDORG00000023648) #33 Ak3 (ENSDORG00000010355) #34 Rcl1 (ENSDORG00000015645) #35 Jak2 (ENSDORG00000011552) #36 ENSDORG00000000109 ENSDORG00000028062 Rodentia_A ANCESTRAL SPECIES 11 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Sciuridae ANCESTRAL SPECIES 6 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00900000143153 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Marmotini ANCESTRAL SPECIES 1 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00900000143153 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Marmotini_b ANCESTRAL SPECIES 88 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00900000143153 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Squirrel MODERN SPECIES 103 TJP2 (ENSSTOG00000011181) ENSSTOG00000033140 PIP5K1B (ENSSTOG00000023540) PABIR1 (ENSSTOG00000022211) TMEM252 (ENSSTOG00000008860) PGM5 (ENSSTOG00000008834) ENSSTOG00000029964 ENSSTOG00000028764 ENSSTOG00000031824 DOCK8 (ENSSTOG00000016411) ENSSTOG00000030036 KANK1 (ENSSTOG00000010218) DMRT1 (ENSSTOG00000010235) #18 DMRT3 (ENSSTOG00000023574) #19 DMRT2 (ENSSTOG00000026909) #20 SMARCA2 (ENSSTOG00000006812) #22 ENSSTOG00000031987 VLDLR (ENSSTOG00000006880) #24 KCNV2 (ENSSTOG00000020003) #25 PUM3 (ENSSTOG00000009586) #26 RFX3 (ENSSTOG00000006974) #27 GLIS3 (ENSSTOG00000000302) #28 ENSSTOG00000031708 #29 SLC1A1 (ENSSTOG00000023583) #30 PLPP6 (ENSSTOG00000025831) #31 SPATA6L (ENSSTOG00000000018) #32 CDC37L1 (ENSSTOG00000000020) #33 AK3 (ENSSTOG00000000021) #34 RCL1 (ENSSTOG00000000023) #35 JAK2 (ENSSTOG00000006679) #36 ENSSTOG00000016298 Arctic ground squirrel MODERN SPECIES 335 DMRT2 (ENSUPAG00010017350) #20 SMARCA2 (ENSUPAG00010016919) #22 ENSUPAG00010016900 VLDLR (ENSUPAG00010016811) #24 KCNV2 (ENSUPAG00010016794) #25 PUM3 (ENSUPAG00010016775) #26 Alpin marmot MODERN SPECIES 32 FXN (ENSMMMG00000003605) PIP5K1B (ENSMMMG00000003495) PABIR1 (ENSMMMG00000003490) TMEM252 (ENSMMMG00000003476) PGM5 (ENSMMMG00000003460) ENSMMMG00000003446 ENSMMMG00000003411 DOCK8 (ENSMMMG00000003328) ENSMMMG00000003304 ENSMMMG00000003301 KANK1 (ENSMMMG00000003281) DMRT1 (ENSMMMG00000003270) #18 DMRT3 (ENSMMMG00000003239) #19 DMRT2 (ENSMMMG00000003238) #20 ENSMMMG00000003212 SMARCA2 (ENSMMMG00000002811) #22 ENSMMMG00000002785 ENSMMMG00000002765 VLDLR (ENSMMMG00000002594) #24 ENSMMMG00000002572 KCNV2 (ENSMMMG00000002550) #25 PUM3 (ENSMMMG00000002513) #26 ENSMMMG00000002504 GLIS3 (ENSMMMG00000002430) #28 ENSMMMG00000002416 ENSMMMG00000002405 #29 SLC1A1 (ENSMMMG00000002380) #30 SPATA6L (ENSMMMG00000002361) #32 PLPP6 (ENSMMMG00000002356) #31 CDC37L1 (ENSMMMG00000002322) #33 AK3 (ENSMMMG00000002286) #34 Eurasian red squirrel MODERN SPECIES 6 ENTREP1 (ENSSVLG00005022461) TJP2 (ENSSVLG00005022528) ENSSVLG00005022798 PIP5K1B (ENSSVLG00005022876) PABIR1 (ENSSVLG00005023031) TMEM252 (ENSSVLG00005023049) PGM5 (ENSSVLG00005023081) ENSSVLG00005023212 ENSSVLG00005023230 ENSSVLG00005023280 DOCK8 (ENSSVLG00005023344) KANK1 (ENSSVLG00005023807) DMRT1 (ENSSVLG00005023845) #18 DMRT3 (ENSSVLG00005023888) #19 DMRT2 (ENSSVLG00005023918) #20 SMARCA2 (ENSSVLG00005024009) #22 ENSSVLG00005024201 VLDLR (ENSSVLG00005024232) #24 KCNV2 (ENSSVLG00005024318) #25 PUM3 (ENSSVLG00005024338) #26 ENSSVLG00005024401 RFX3 (ENSSVLG00005024420) #27 GLIS3 (ENSSVLG00005024543) #28 SLC1A1 (ENSSVLG00005024569) #30 SPATA6L (ENSSVLG00005024615) #32 PLPP6 (ENSSVLG00005024689) #31 CDC37L1 (ENSSVLG00005024699) #33 ENSSVLG00005024721 #34 RCL1 (ENSSVLG00005024752) #35 JAK2 (ENSSVLG00005024808) #36 INSL6 (ENSSVLG00005024849) Hystricomorpha ANCESTRAL SPECIES 46 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Naked mole-rat female MODERN SPECIES 3 TMEM252 (ENSHGLG00000033131) PGM5 (ENSHGLG00000013086) ENSHGLG00000046909 CBWD3 (ENSHGLG00000015962) ENSHGLG00000020779 DOCK8 (ENSHGLG00000016578) ENSHGLG00000050403 ENSHGLG00000045832 KANK1 (ENSHGLG00000012000) DMRT1 (ENSHGLG00000043033) #18 DMRT3 (ENSHGLG00000012858) #19 ENSHGLG00000033430 #20 ENSHGLG00000036415 ENSHGLG00000035319 ENSHGLG00000013697 ENSHGLG00000005215 #22 ENSHGLG00000035043 ENSHGLG00000016566 VLDLR (ENSHGLG00000016113) #24 KCNV2 (ENSHGLG00000015810) #25 ENSHGLG00000015868 #26 ENSHGLG00000016314 ENSHGLG00000042585 ENSHGLG00000019207 ENSHGLG00000018913 #27 ENSHGLG00000015091 #28 ENSHGLG00000032696 ENSHGLG00000017534 #29 SLC1A1 (ENSHGLG00000015155) #30 PLPP6 (ENSHGLG00000038858) #31 SPATA6L (ENSHGLG00000018477) #32 Hystricomorpha_a DUPLICATION Hystricomorpha_a DUPLICATION Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154821.b.c.a #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154821.b.c.a #22 Degu MODERN SPECIES 257 NEK3 (ENSODEG00000001087) CKAP2 (ENSODEG00000001025) VPS36 (ENSODEG00000000909) THSD1 (ENSODEG00000000849) ENSODEG00000000791 ENSODEG00000000772 ENSODEG00000000759 ENSODEG00000000752 FOXO1 (ENSODEG00000000747) ENSODEG00000000728 ENSODEG00000000717 #22 COG6 (ENSODEG00000003859) LHFPL6 (ENSODEG00000003836) ENSODEG00000003473 PROSER1 (ENSODEG00000003365) ENSODEG00000003312 ENSODEG00000003298 ENSODEG00000003236 TWSG1 (ENSODEG00000003220) RALBP1 (ENSODEG00000001763) PPP4R1 (ENSODEG00000001319) RAB31 (ENSODEG00000001085) VAPA (ENSODEG00000001065) APCDD1 (ENSODEG00000001023) ENSODEG00000000963 PIEZO2 (ENSODEG00000000546) Guinea pig MODERN SPECIES 13 ENSCPOG00000031141 ENSCPOG00000034500 TRDC (ENSCPOG00000000844) ENSCPOG00000033000 ENSCPOG00000040263 OR4E2 (ENSCPOG00000026054) OR10G2 (ENSCPOG00000039240) SALL2 (ENSCPOG00000040220) METTL3 (ENSCPOG00000002545) TOX4 (ENSCPOG00000025504) RAB2B (ENSCPOG00000026575) CHD8 (ENSCPOG00000002538) SUPT16H (ENSCPOG00000002534) RPGRIP1 (ENSCPOG00000002526) ENSCPOG00000001474 ENSCPOG00000035385 #22 TMEM253 (ENSCPOG00000031716) ZNF219 (ENSCPOG00000022085) ARHGEF40 (ENSCPOG00000012862) ENSCPOG00000034881 RNASE13 (ENSCPOG00000019970) TPPP2 (ENSCPOG00000023279) NDRG2 (ENSCPOG00000002625) ENSCPOG00000031550 ENSCPOG00000027335 ENSCPOG00000035683 ENSCPOG00000031798 ENSCPOG00000038384 ENSCPOG00000026584 ENSCPOG00000036707 OR6S1 (ENSCPOG00000011915) Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154821.b.c.b #22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154821.b.c.b #22 Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 76 ENSODEG00000015493 UPK3B (ENSODEG00000015729) DTX2 (ENSODEG00000015332) ENSODEG00000016251 SSC4D (ENSODEG00000015613) YWHAG (ENSODEG00000016579) HSPB1 (ENSODEG00000015698) ENSODEG00000016162 SRRM3 (ENSODEG00000015988) ENSODEG00000015859 ENSODEG00000020351 STYXL1 (ENSODEG00000015904) TMEM120A (ENSODEG00000015559) POR (ENSODEG00000015517) RHBDD2 (ENSODEG00000016225) ENSODEG00000015918 #22 ENSODEG00000015707 ENSODEG00000020305 CCL24 (ENSODEG00000015142) HIP1 (ENSODEG00000016265) ENSODEG00000015346 NSUN5 (ENSODEG00000015132) TRIM50 (ENSODEG00000015712) FKBP6 (ENSODEG00000016257) FZD9 (ENSODEG00000020544) BAZ1B (ENSODEG00000015361) BCL7B (ENSODEG00000015813) TBL2 (ENSODEG00000016440) MLXIPL (ENSODEG00000015218) ENSODEG00000015421 DNAJC30 (ENSODEG00000015782) Degu MODERN SPECIES 53 CDKN1B (ENSODEG00000012537) GPR19 (ENSODEG00000013191) CREBL2 (ENSODEG00000009860) ENSODEG00000019647 DUSP16 (ENSODEG00000009500) ENSODEG00000008969 MANSC1 (ENSODEG00000009259) LRP6 (ENSODEG00000008930) BCL2L14 (ENSODEG00000008991) ETV6 (ENSODEG00000009759) ENSODEG00000009522 ENSODEG00000008835 ENSODEG00000010368 ENSODEG00000009595 ENSODEG00000010351 ENSODEG00000009496 #22 ENSODEG00000009605 ENSODEG00000009202 CLEC12B (ENSODEG00000009413) CLEC1B (ENSODEG00000009886) CLEC1A (ENSODEG00000009200) CLEC7A (ENSODEG00000008833) TMEM52B (ENSODEG00000010426) GABARAPL1 (ENSODEG00000010037) ENSODEG00000009587 KLRD1 (ENSODEG00000010635) Degu MODERN SPECIES 47 ENSODEG00000007912 CC2D2A (ENSODEG00000008363) FBXL5 (ENSODEG00000009798) BST1 (ENSODEG00000008525) CD38 (ENSODEG00000008127) PROM1 (ENSODEG00000011756) TAPT1 (ENSODEG00000007601) LDB2 (ENSODEG00000010335) QDPR (ENSODEG00000009810) CLRN2 (ENSODEG00000009531) ENSODEG00000008724 MED28 (ENSODEG00000010235) FAM184B (ENSODEG00000008017) NCAPG (ENSODEG00000007988) ENSODEG00000007625 ENSODEG00000007550 #22 SLIT2 (ENSODEG00000011554) ENSODEG00000009142 KCNIP4 (ENSODEG00000009132) ADGRA3 (ENSODEG00000008912) GBA3 (ENSODEG00000007983) ENSODEG00000008409 ENSODEG00000008891 ENSODEG00000008421 LGI2 (ENSODEG00000009206) SEPSECS (ENSODEG00000010607) PI4K2B (ENSODEG00000008999) ENSODEG00000007449 ENSODEG00000006972 ENSODEG00000019525 SLC34A2 (ENSODEG00000010839) Degu MODERN SPECIES 48 ENSODEG00000013469 SLC10A1 (ENSODEG00000013278) ENSODEG00000014061 SMOC1 (ENSODEG00000012836) ENSODEG00000014278 SLC8A3 (ENSODEG00000013865) SYNJ2BP (ENSODEG00000014092) FLVCR2 (ENSODEG00000013854) ERG28 (ENSODEG00000013861) ENSODEG00000012504 ENSODEG00000013591 TGFB3 (ENSODEG00000013103) IFT43 (ENSODEG00000013768) ENSODEG00000012743 GPATCH2L (ENSODEG00000013474) ENSODEG00000013347 #22 ESRRB (ENSODEG00000013419) VASH1 (ENSODEG00000012506) ENSODEG00000019977 ANGEL1 (ENSODEG00000012416) LRRC74A (ENSODEG00000013756) CIPC (ENSODEG00000012302) ZDHHC22 (ENSODEG00000016163) TMEM63C (ENSODEG00000013078) ENSODEG00000011875 ENSODEG00000014820 POMT2 (ENSODEG00000012188) GSTZ1 (ENSODEG00000012019) TMED8 (ENSODEG00000012850) NOXRED1 (ENSODEG00000013652) VIPAS39 (ENSODEG00000013197) Degu MODERN SPECIES 173 ENSODEG00000019887 PRXL2A (ENSODEG00000012446) TSPAN14 (ENSODEG00000010478) SH2D4B (ENSODEG00000013141) NRG3 (ENSODEG00000011562) ENSODEG00000012959 ENSODEG00000011340 ENSODEG00000012481 CDHR1 (ENSODEG00000010766) LRIT2 (ENSODEG00000011609) LRIT1 (ENSODEG00000012611) RGR (ENSODEG00000011393) CCSER2 (ENSODEG00000010793) GRID1 (ENSODEG00000011958) ENSODEG00000011516 ENSODEG00000019892 #22 ENSODEG00000011721 OPN4 (ENSODEG00000011887) ENSODEG00000011383 ENSODEG00000019882 BMPR1A (ENSODEG00000011436) ENSODEG00000012425 SNCG (ENSODEG00000012548) ENSODEG00000012123 ENSODEG00000011593 SHLD2 (ENSODEG00000012114) ENSODEG00000020251 ENSODEG00000011514 ZNF488 (ENSODEG00000011943) RBP3 (ENSODEG00000012586) GDF2 (ENSODEG00000012030) Hystricomorpha_a ANCESTRAL SPECIES 53 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b.d #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00900000143153 #29 ENSGT00940000155397.b #30 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Hystricomorpha_b ANCESTRAL SPECIES 71 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a ENSGT00940000156489.n #18 ENSGT00940000160420 #19 ENSGT00940000156282.a.a #20 ENSGT00940000154821.b.d #22 ENSGT00520000061590 ENSGT00940000155460 #24 ENSGT00940000157438 #25 ENSGT00390000015757 #26 ENSGT01050000244879.a.a.b #27 ENSGT00940000156896 #28 ENSGT00940000155397.b #30 ENSGT00900000143153 #29 ENSGT00530000063821.b.b #32 ENSGT00940000160907 #31 ENSGT00390000013443.d #33 ENSGT00940000155120 #34 ENSGT00530000063404.a.c.a #35 ENSGT00940000155640 #36 ENSGT00940000154434.b Long-tailed chinchilla MODERN SPECIES 141 PTAR1 (ENSCLAG00000008830) APBA1 (ENSCLAG00000006043) ENTREP1 (ENSCLAG00000007506) TJP2 (ENSCLAG00000012841) FXN (ENSCLAG00000009225) PIP5K1B (ENSCLAG00000011292) TMEM252 (ENSCLAG00000005523) PGM5 (ENSCLAG00000005854) ENSCLAG00000006762 ENSCLAG00000005076 DOCK8 (ENSCLAG00000005204) KANK1 (ENSCLAG00000015509) DMRT1 (ENSCLAG00000015238) #18 DMRT3 (ENSCLAG00000015537) #19 DMRT2 (ENSCLAG00000006168) #20 SMARCA2 (ENSCLAG00000014484) #22 VLDLR (ENSCLAG00000007543) #24 KCNV2 (ENSCLAG00000013226) #25 PUM3 (ENSCLAG00000011892) #26 RFX3 (ENSCLAG00000009044) #27 GLIS3 (ENSCLAG00000008116) #28 ENSCLAG00000009238 SLC1A1 (ENSCLAG00000009832) #30 ENSCLAG00000009476 #29 SPATA6L (ENSCLAG00000010497) #32 PLPP6 (ENSCLAG00000017735) #31 CDC37L1 (ENSCLAG00000005805) #33 AK3 (ENSCLAG00000006329) #34 RCL1 (ENSCLAG00000007445) #35 JAK2 (ENSCLAG00000005091) #36 INSL6 (ENSCLAG00000007423) Degu MODERN SPECIES 128 FXN (ENSODEG00000003413) PIP5K1B (ENSODEG00000003585) ENSODEG00000003739 PABIR1 (ENSODEG00000019013) TMEM252 (ENSODEG00000003841) PGM5 (ENSODEG00000003917) ENSODEG00000003983 ENSODEG00000004467 ENSODEG00000004602 ENSODEG00000004711 ENSODEG00000004719 KANK1 (ENSODEG00000004766) DMRT1 (ENSODEG00000004898) #18 DMRT3 (ENSODEG00000004984) #19 DMRT2 (ENSODEG00000004992) #20 SMARCA2 (ENSODEG00000005452) #22 ENSODEG00000006378 ENSODEG00000003492 #24 KCNV2 (ENSODEG00000003536) #25 ENSODEG00000003625 #26 RFX3 (ENSODEG00000003682) #27 GLIS3 (ENSODEG00000003731) #28 SLC1A1 (ENSODEG00000003884) #30 ENSODEG00000003949 #29 SPATA6L (ENSODEG00000004066) #32 PLPP6 (ENSODEG00000019026) #31 CDC37L1 (ENSODEG00000004185) #33 ENSODEG00000004121 #34 RCL1 (ENSODEG00000004151) #35 JAK2 (ENSODEG00000004208) #36 ENSODEG00000004220 Guinea pig MODERN SPECIES 21 PTAR1 (ENSCPOG00000008368) APBA1 (ENSCPOG00000032780) ENTREP1 (ENSCPOG00000003236) TJP2 (ENSCPOG00000021062) FXN (ENSCPOG00000004293) PIP5K1B (ENSCPOG00000004288) PABIR1 (ENSCPOG00000003280) TMEM252 (ENSCPOG00000013771) PGM5 (ENSCPOG00000015031) ENSCPOG00000019718 DOCK8 (ENSCPOG00000008366) KANK1 (ENSCPOG00000008389) DMRT1 (ENSCPOG00000005909) #18 DMRT3 (ENSCPOG00000005912) #19 DMRT2 (ENSCPOG00000008452) #20 SMARCA2 (ENSCPOG00000005475) #22 VLDLR (ENSCPOG00000007685) #24 KCNV2 (ENSCPOG00000032893) #25 ENSCPOG00000008552 #26 RFX3 (ENSCPOG00000000900) #27 GLIS3 (ENSCPOG00000005523) #28 ENSCPOG00000030794 #29 SLC1A1 (ENSCPOG00000011151) #30 PLPP6 (ENSCPOG00000012931) #31 SPATA6L (ENSCPOG00000012925) #32 CDC37L1 (ENSCPOG00000030938) #33 AK3 (ENSCPOG00000011927) #34 RCL1 (ENSCPOG00000015354) #35 JAK2 (ENSCPOG00000014653) #36 INSL6 (ENSCPOG00000002694) ENSCPOG00000001365 Lagomorpha ANCESTRAL SPECIES ENSGT00940000154821.b #22 Pika MODERN SPECIES 4399 SMARCA2 (ENSOPRG00000013474) #22 Rabbit MODERN SPECIES ENSOCUG00000014142 PGM5 (ENSOCUG00000014125) ENSOCUG00000010467 ENSOCUG00000000733 DOCK8 (ENSOCUG00000003208) KANK1 (ENSOCUG00000004753) ENSOCUG00000036685 DMRT3 (ENSOCUG00000004582) #19 ENSOCUG00000027863 DMRT2 (ENSOCUG00000003299) #20 ENSOCUG00000037388 ENSOCUG00000034834 ENSOCUG00000023438 ENSOCUG00000035677 ENSOCUG00000000241 SMARCA2 (ENSOCUG00000006320) #22 ENSOCUG00000022775 VLDLR (ENSOCUG00000002231) #24 KCNV2 (ENSOCUG00000004385) #25 ENSOCUG00000004189 #26 ENSOCUG00000039572 RFX3 (ENSOCUG00000014086) #27 ENSOCUG00000023393 ENSOCUG00000027590 GLIS3 (ENSOCUG00000023004) #28 ENSOCUG00000036407 ENSOCUG00000013264 #30 ENSOCUG00000026987 ENSOCUG00000022202 #30 PLPP6 (ENSOCUG00000003465) #31 SPATA6L (ENSOCUG00000003455) #32 Tree shrew MODERN SPECIES 5134 ENSTBEG00000008665 SMARCA2 (ENSTBEG00000008767) #22