Amniota	ANCESTRAL SPECIES	107														ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32
Mammalia	ANCESTRAL SPECIES	95							ENSGT01100000263479.A ##7	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00960000189159	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00530000063351 #35	ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000159046.C
Theria	ANCESTRAL SPECIES	27							ENSGT01100000263479.A ##7	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00960000189159	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a #35	ENSGT00530000063351.b ##35
Eutheria	ANCESTRAL SPECIES	29					ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.b ##35
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a #7
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.d ##7	ENSGT01100000263479.F ##7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b ##7
Primates	ANCESTRAL SPECIES	15	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a #7
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a #7
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b #7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a #11
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.c ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b #7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a #11
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a #8	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b #36
Hominidae	ANCESTRAL SPECIES		ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b #7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a #9	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.e ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b.a ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.c #7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a #9	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.e ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00910000148701 #18	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b.a #36
Homo/Pan group	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.c #7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.b.a #8	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a.a.a #9	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.e ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00910000148701 #18	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b.a #36
Pan	ANCESTRAL SPECIES	9	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.b.a.a ##7	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a.a.a #9	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.a #11	ENSGT00940000156165.`b.b ##12	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00910000148701 #18	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b.a #36	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.b.b.a.b #37
Bonobo	MODERN SPECIES	10	ENSPPAG00000036685 #7	ENSPPAG00000000864 #8	PSG3 (ENSPPAG00000028128) #9	CEACAM8 (ENSPPAG00000038978) #10	ENSPPAG00000034140 #11	ENSPPAG00000026064 #12	CXCL17 (ENSPPAG00000000614) #13	LIPE (ENSPPAG00000042254) #14	CNFN (ENSPPAG00000037166) #15	MEGF8 (ENSPPAG00000026919) #16	TMEM145 (ENSPPAG00000038297) #17	ENSPPAG00000018447 #18	PRR19 (ENSPPAG00000022293) #19	ENSPPAG00000026311 #20	CIC (ENSPPAG00000034281) #21	ERF (ENSPPAG00000027990) #22	GSK3A (ENSPPAG00000036611) #23	DEDD2 (ENSPPAG00000042718) #24	POU2F2 (ENSPPAG00000038336) #25	ZNF574 (ENSPPAG00000005476) #26	GRIK5 (ENSPPAG00000035623) #27	ATP1A3 (ENSPPAG00000039434) #28	RABAC1 (ENSPPAG00000038053) #29	ERFL (ENSPPAG00000032217) #30	ARHGEF1 (ENSPPAG00000039794) #31	CD79A (ENSPPAG00000038624) #32	RPS19 (ENSPPAG00000041030) #33	ENSPPAG00000042029 #34	LYPD4 (ENSPPAG00000008791) #35	CEACAM3 (ENSPPAG00000038264) #36	CEACAM6 (ENSPPAG00000035405) #37
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000050518 ##7	ENSPTRG00000045330 ##7	ENSPTRG00000048170 #9	CEACAM8 (ENSPTRG00000011032) #10	CEACAM1 (ENSPTRG00000011061) ##7	ENSPTRG00000038866 ##12	CXCL17 (ENSPTRG00000011060) #13	LIPE (ENSPTRG00000011058) #14	CNFN (ENSPTRG00000011057) #15	MEGF8 (ENSPTRG00000011055) #16	TMEM145 (ENSPTRG00000011054) #17	ENSPTRG00000052388 #18	PRR19 (ENSPTRG00000011053) #19	PAFAH1B3 (ENSPTRG00000011052) #20	CIC (ENSPTRG00000011051) #21	ERF (ENSPTRG00000028999) #22	GSK3A (ENSPTRG00000011049) #23	DEDD2 (ENSPTRG00000011046) #24	POU2F2 (ENSPTRG00000011045) #25	ZNF574 (ENSPTRG00000011044) #26	GRIK5 (ENSPTRG00000011042) #27	ATP1A3 (ENSPTRG00000011041) #28	RABAC1 (ENSPTRG00000011040) #29	ERFL (ENSPTRG00000045867) #30	ARHGEF1 (ENSPTRG00000011039) #31	CD79A (ENSPTRG00000011038) #32	RPS19 (ENSPTRG00000011037) ##33	DMRTC2 (ENSPTRG00000011036) #34	LYPD4 (ENSPTRG00000011035) #35	CEACAM3 (ENSPTRG00000011033) #36	CEACAM6 (ENSPTRG00000011063) ##7
Human	MODERN SPECIES	10	PSG7 (ENSG00000221878) ##7	PSG6 (ENSG00000170848) ##7	PSG1 (ENSG00000231924) ##7	PSG8 (ENSG00000124467) #8	PSG3 (ENSG00000221826) #9	CEACAM8 (ENSG00000124469) #10	CEACAM1 (ENSG00000079385) ##7	CXCL17 (ENSG00000189377) #13	LIPE (ENSG00000079435) #14	CNFN (ENSG00000105427) #15	MEGF8 (ENSG00000105429) #16	TMEM145 (ENSG00000167619) #17	PRR19 (ENSG00000188368) #19	PAFAH1B3 (ENSG00000079462) #20	CIC (ENSG00000079432) #21	ERF (ENSG00000105722) #22	ENSG00000268643	GSK3A (ENSG00000105723) #23	ZNF526 (ENSG00000167625)	ENSG00000288671	DEDD2 (ENSG00000160570) #24	POU2F2 (ENSG00000028277) #25	ZNF574 (ENSG00000105732) #26	GRIK5 (ENSG00000105737) #27	ATP1A3 (ENSG00000105409) #28	RABAC1 (ENSG00000105404) #29	ERFL (ENSG00000268041) #30	ARHGEF1 (ENSG00000076928) #31	CD79A (ENSG00000105369) #32	RPS19 (ENSG00000105372) #33	DMRTC2 (ENSG00000142025) #34
Gorilla	MODERN SPECIES	10	PSG4 (ENSGGOG00000006433) ##7	ENSGGOG00000012005 #7	ENSGGOG00000010966 ##7	CEACAM8 (ENSGGOG00000012684) #10	ENSGGOG00000005936 #36	ENSGGOG00000039327 ##12	CXCL17 (ENSGGOG00000000763) #13	LIPE (ENSGGOG00000000761) #14	CNFN (ENSGGOG00000000760) #15	MEGF8 (ENSGGOG00000000758) #16	TMEM145 (ENSGGOG00000024254) #17	ENSGGOG00000037328 #18	PRR19 (ENSGGOG00000013249) #19	PAFAH1B3 (ENSGGOG00000013243) #20	CIC (ENSGGOG00000000192) #21	ERF (ENSGGOG00000004656) #22	GSK3A (ENSGGOG00000004649) #23	DEDD2 (ENSGGOG00000009107) #24	POU2F2 (ENSGGOG00000011088) #25	ZNF574 (ENSGGOG00000027095) #26	GRIK5 (ENSGGOG00000013654) #27	ATP1A3 (ENSGGOG00000005963) #28	RABAC1 (ENSGGOG00000003948) #29	ERFL (ENSGGOG00000022280) #30	ARHGEF1 (ENSGGOG00000015282) #31	CD79A (ENSGGOG00000015280) #32	RPS19 (ENSGGOG00000015279) #33	DMRTC2 (ENSGGOG00000015274) #34	LYPD4 (ENSGGOG00000010514) #35	ENSGGOG00000012591 ##7	ENSGGOG00000026338 #37
Orangutan	MODERN SPECIES	10	ENSPPYG00000010053 ##7	ENSPPYG00000032845 #7	PSG8 (ENSPPYG00000035850) #8	ENSPPYG00000041166 ##7	ENSPPYG00000036327 #7	ENSPPYG00000010537 ##7	CEACAM8 (ENSPPYG00000010023) #10	CEACAM1 (ENSPPYG00000010050) ##7	CXCL17 (ENSPPYG00000031148) #13	LIPE (ENSPPYG00000010048) #14	ENSPPYG00000041577 #15	MEGF8 (ENSPPYG00000031085) #16	TMEM145 (ENSPPYG00000010044) #17	PRR19 (ENSPPYG00000010043) #19	ENSPPYG00000010042 #20	ERF (ENSPPYG00000010040) #22	GSK3A (ENSPPYG00000010039) #23	ZNF526 (ENSPPYG00000010038)	DEDD2 (ENSPPYG00000010037) #24	POU2F2 (ENSPPYG00000010036) #25	ZNF574 (ENSPPYG00000010035) #26	GRIK5 (ENSPPYG00000010034) #27	ATP1A3 (ENSPPYG00000010033) #28	RABAC1 (ENSPPYG00000033290) #29	ERFL (ENSPPYG00000030541) #30	ARHGEF1 (ENSPPYG00000010031) #31	CD79A (ENSPPYG00000010030) #32	RPS19 (ENSPPYG00000010029) ##33	DMRTC2 (ENSPPYG00000010028) #34	LYPD4 (ENSPPYG00000010027) #35	CEACAM3 (ENSPPYG00000010026) #36
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a ##7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Vervet Monkey	MODERN SPECIES	25	ETHE1 (ENSCSAG00000003404)	ENSCSAG00000003408	LYPD3 (ENSCSAG00000003412)	TEX101 (ENSCSAG00000003415) ##35	CD177 (ENSCSAG00000003420) ##35	CEACAM8 (ENSCSAG00000003425) #10	ENSCSAG00000003432 #11	CXCL17 (ENSCSAG00000003434) #13	LIPE (ENSCSAG00000003440) #14	CNFN (ENSCSAG00000003441) #15	MEGF8 (ENSCSAG00000003447) #16	TMEM145 (ENSCSAG00000003454) #17	PRR19 (ENSCSAG00000003457) #19	PAFAH1B3 (ENSCSAG00000003459) #20	ENSCSAG00000003462 #21	ERF (ENSCSAG00000003467) #22	GSK3A (ENSCSAG00000003471) #23	ZNF526 (ENSCSAG00000019619)	DEDD2 (ENSCSAG00000003475) #24	POU2F2 (ENSCSAG00000003479) #25	ZNF574 (ENSCSAG00000019618) #26	GRIK5 (ENSCSAG00000003483) #27	ATP1A3 (ENSCSAG00000003487) #28	RABAC1 (ENSCSAG00000003491) #29	ARHGEF1 (ENSCSAG00000003495) #31	CD79A (ENSCSAG00000003499) #32	RPS19 (ENSCSAG00000003501) ##33	DMRTC2 (ENSCSAG00000003507) #34	ENSCSAG00000003511	ENSCSAG00000003513 #11	ENSCSAG00000003514 #11
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.c.a.b.b.b ##7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a #11	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00510000048142.i.b	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00390000013102.e.b #33
Cercopithecinae_b	ANCESTRAL SPECIES	24	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00510000048142.i.b	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34
Olive baboon	MODERN SPECIES	12	LYPD3 (ENSPANG00000026276)	TEX101 (ENSPANG00000007650) ##35	CD177 (ENSPANG00000002968) ##35	ENSPANG00000003143 #10	ENSPANG00000001269 ##7	ENSPANG00000040562	ENSPANG00000005738 #11	CXCL17 (ENSPANG00000011863) #13	LIPE (ENSPANG00000008662) #14	CNFN (ENSPANG00000009950) #15	MEGF8 (ENSPANG00000013862) #16	TMEM145 (ENSPANG00000007222) #17	PRR19 (ENSPANG00000010671) #19	PAFAH1B3 (ENSPANG00000012468) #20	CIC (ENSPANG00000009039) #21	ERF (ENSPANG00000003832) #22	GSK3A (ENSPANG00000012948) #23	ZNF526 (ENSPANG00000023873)	DEDD2 (ENSPANG00000031170) #24	POU2F2 (ENSPANG00000008094) #25	ZNF574 (ENSPANG00000018272) #26	GRIK5 (ENSPANG00000021116) #27	ATP1A3 (ENSPANG00000002667) #28	RABAC1 (ENSPANG00000003146) #29	ERFL (ENSPANG00000025406) #30	ARHGEF1 (ENSPANG00000011864) #31	CD79A (ENSPANG00000013982) #32	ENSPANG00000008041 ##33	DMRTC2 (ENSPANG00000015477) #34	LYPD4 (ENSPANG00000005404) #35	ENSPANG00000024739 #11
Cercopithecinae_d	ANCESTRAL SPECIES	84					ENSGT01100000263479.D.a.c.a.b.c.b ##7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00510000048142.i.b	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Sooty mangabey	MODERN SPECIES	274			ENSCATG00000034767 ##7	ENSCATG00000035421 ##7	ENSCATG00000038844 ##7	CEACAM8 (ENSCATG00000036104) #10	ENSCATG00000036965 #11	CXCL17 (ENSCATG00000040602) #13	LIPE (ENSCATG00000040670) #14	CNFN (ENSCATG00000038745) #15	MEGF8 (ENSCATG00000004269) #16	TMEM145 (ENSCATG00000037682) #17	PRR19 (ENSCATG00000040460) #19	PAFAH1B3 (ENSCATG00000040291) #20	CIC (ENSCATG00000039935) #21	ERF (ENSCATG00000031239) #22	GSK3A (ENSCATG00000045265) #23	DEDD2 (ENSCATG00000040748) #24	POU2F2 (ENSCATG00000037147) #25	ENSCATG00000043188	ZNF574 (ENSCATG00000037432) #26	ENSCATG00000034830	GRIK5 (ENSCATG00000030312) #27	ATP1A3 (ENSCATG00000040558) #28	RABAC1 (ENSCATG00000041833) #29	ERFL (ENSCATG00000030550) #30	ARHGEF1 (ENSCATG00000031490) #31	CD79A (ENSCATG00000012116) #32	RPS19 (ENSCATG00000033159) #33	DMRTC2 (ENSCATG00000037958) #34	LYPD4 (ENSCATG00000034011) #35
Drill	MODERN SPECIES	126	ENSMLEG00000031160 ##7	ENSMLEG00000035352	ENSMLEG00000012311 ##7	ENSMLEG00000013245 ##7	ENSMLEG00000034726 ##7	CEACAM8 (ENSMLEG00000043769) #10	ENSMLEG00000007493 #11	CXCL17 (ENSMLEG00000031431) #13	LIPE (ENSMLEG00000037329) #14	CNFN (ENSMLEG00000027949) #15	MEGF8 (ENSMLEG00000038649) #16	TMEM145 (ENSMLEG00000034677) #17	PRR19 (ENSMLEG00000040738) #19	PAFAH1B3 (ENSMLEG00000016205) #20	CIC (ENSMLEG00000040615) #21	ERF (ENSMLEG00000031231) #22	DEDD2 (ENSMLEG00000030121) #24	POU2F2 (ENSMLEG00000037537) #25	ENSMLEG00000006945	ZNF574 (ENSMLEG00000039366) #26	GRIK5 (ENSMLEG00000036222) #27	ENSMLEG00000030091	ATP1A3 (ENSMLEG00000008811) #28	RABAC1 (ENSMLEG00000036383) #29	ERFL (ENSMLEG00000041558) #30	ARHGEF1 (ENSMLEG00000028557) #31	CD79A (ENSMLEG00000044014) #32	RPS19 (ENSMLEG00000031613) #33	DMRTC2 (ENSMLEG00000024359) #34	LYPD4 (ENSMLEG00000033535) #35	ENSMLEG00000023558 #11
Macaca	ANCESTRAL SPECIES	12	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.a ##7	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.b.b ##7	ENSGT01100000263479.D.a.c.a.b.c.b ##7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.z #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00510000048142.i.b	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34
Pig-tailed macaque	MODERN SPECIES	218				ENSMNEG00000028622	ENSMNEG00000034629 ##7	CEACAM8 (ENSMNEG00000040447) #10	ENSMNEG00000043260 #11	CXCL17 (ENSMNEG00000034675) #13	LIPE (ENSMNEG00000040343) #14	CNFN (ENSMNEG00000033488) #15	MEGF8 (ENSMNEG00000029250) #16	TMEM145 (ENSMNEG00000035718) #17	PRR19 (ENSMNEG00000036706) #19	PAFAH1B3 (ENSMNEG00000038654) #20	CIC (ENSMNEG00000032857) #21	ERF (ENSMNEG00000035901) #22	GSK3A (ENSMNEG00000038536) #23	DEDD2 (ENSMNEG00000030378) #24	POU2F2 (ENSMNEG00000029149) #25	ENSMNEG00000020419	ZNF574 (ENSMNEG00000034279) #26	GRIK5 (ENSMNEG00000041919) #27	ENSMNEG00000033887	ATP1A3 (ENSMNEG00000032260) #28	RABAC1 (ENSMNEG00000041557) #29	ERFL (ENSMNEG00000033425) #30	ARHGEF1 (ENSMNEG00000028757) #31	CD79A (ENSMNEG00000043118) #32	RPS19 (ENSMNEG00000012619) #33	DMRTC2 (ENSMNEG00000030925) #34	LYPD4 (ENSMNEG00000030179) #35
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.a ##7	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.b.b ##7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.b.b.b.a	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.z #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.c.a.a #11
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000046378 ##7	ENSMFAG00000047658	ENSMFAG00000065464	ENSMFAG00000001177	CEACAM8 (ENSMFAG00000000741) #10	ENSMFAG00000046367 #11	CXCL17 (ENSMFAG00000050563) #13	LIPE (ENSMFAG00000030784) #14	CNFN (ENSMFAG00000035661) #15	ENSMFAG00000059804	MEGF8 (ENSMFAG00000043792) #16	TMEM145 (ENSMFAG00000037390) #17	PRR19 (ENSMFAG00000036917) #19	ENSMFAG00000031090 #20	CIC (ENSMFAG00000042927) #21	ERF (ENSMFAG00000035885) #22	ZNF526 (ENSMFAG00000044402)	GSK3A (ENSMFAG00000001497) #23	POU2F2 (ENSMFAG00000030322) #25	ENSMFAG00000049974	ENSMFAG00000049208	GRIK5 (ENSMFAG00000039157) #27	ATP1A3 (ENSMFAG00000000209) #28	RABAC1 (ENSMFAG00000030347) #29	ARHGEF1 (ENSMFAG00000032261) #31	CD79A (ENSMFAG00000001013) #32	ENSMFAG00000045611 ##33	ENSMFAG00000049391	DMRTC2 (ENSMFAG00000045593) #34	ENSMFAG00000049321	LYPD4 (ENSMFAG00000039631) #35
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	10	ENSMMUG00000050799 ##7	ENSMMUG00000063977	ENSMMUG00000039210 ##7	ENSMMUG00000056518	CEACAM8 (ENSMMUG00000044353) #10	ENSMMUG00000038920 #11	CXCL17 (ENSMMUG00000058656) #13	LIPE (ENSMMUG00000017916) #14	CNFN (ENSMMUG00000052163) #15	ENSMMUG00000053094	MEGF8 (ENSMMUG00000014932) #16	TMEM145 (ENSMMUG00000012170) #17	PRR19 (ENSMMUG00000012171) #19	PAFAH1B3 (ENSMMUG00000012172) #20	CIC (ENSMMUG00000012174) #21	ERF (ENSMMUG00000014599) #22	ZNF526 (ENSMMUG00000045335)	DEDD2 (ENSMMUG00000041041) #24	POU2F2 (ENSMMUG00000013376) #25	ENSMMUG00000060814	ZNF574 (ENSMMUG00000013374) #26	GRIK5 (ENSMMUG00000017431) #27	ATP1A3 (ENSMMUG00000017427) #28	RABAC1 (ENSMMUG00000017426) #29	ENSMMUG00000022309 #22	ARHGEF1 (ENSMMUG00000022305) #31	CD79A (ENSMMUG00000047772) #32	RPS19 (ENSMMUG00000013429) ##33	DMRTC2 (ENSMMUG00000013426) #34	LYPD4 (ENSMMUG00000013425) #35	CEACAM5 (ENSMMUG00000018103) #11
Rhesus	MODERN SPECIES	10	ENSMMUG00000053094	MEGF8 (ENSMMUG00000014932) #16	TMEM145 (ENSMMUG00000012170) #17	PRR19 (ENSMMUG00000012171) #19	PAFAH1B3 (ENSMMUG00000012172) #20	CIC (ENSMMUG00000012174) #21	ERF (ENSMMUG00000014599) #22	ZNF526 (ENSMMUG00000045335)	DEDD2 (ENSMMUG00000041041) #24	POU2F2 (ENSMMUG00000013376) #25	ENSMMUG00000060814	ZNF574 (ENSMMUG00000013374) #26	GRIK5 (ENSMMUG00000017431) #27	ATP1A3 (ENSMMUG00000017427) #28	RABAC1 (ENSMMUG00000017426) #29	ENSMMUG00000022309 #22	ARHGEF1 (ENSMMUG00000022305) #31	CD79A (ENSMMUG00000047772) #32	RPS19 (ENSMMUG00000013429) ##33	DMRTC2 (ENSMMUG00000013426) #34	LYPD4 (ENSMMUG00000013425) #35	CEACAM5 (ENSMMUG00000018103) #11	CEACAM7 (ENSMMUG00000059229) ##7	CEACAM4 (ENSMMUG00000013422) ##7	ENSMMUG00000014348	B3GNT8 (ENSMMUG00000014347)	EXOSC5 (ENSMMUG00000014345)	TMEM91 (ENSMMUG00000014346)	B9D2 (ENSMMUG00000064979)	TGFB1 (ENSMMUG00000008142)	CCDC97 (ENSMMUG00000008143)
Rhinopithecus	ANCESTRAL SPECIES	7						ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.c.b #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.w #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00900000143631	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.c.a.a #11
Black snub-nosed monkey	MODERN SPECIES	1480							ENSRBIG00000038958	CEACAM8 (ENSRBIG00000036569) #10	ENSRBIG00000029372 #11	CXCL17 (ENSRBIG00000034024) #13	LIPE (ENSRBIG00000026032) #14	MEGF8 (ENSRBIG00000030430) #16	TMEM145 (ENSRBIG00000027953) #17	ENSRBIG00000036695 #20	CIC (ENSRBIG00000037882) #21	ERF (ENSRBIG00000044831) #22	GSK3A (ENSRBIG00000026755) #23	DEDD2 (ENSRBIG00000036819) #24	POU2F2 (ENSRBIG00000033424) #25	ENSRBIG00000002228	ZNF574 (ENSRBIG00000039444) #26	GRIK5 (ENSRBIG00000039241) #27	ATP1A3 (ENSRBIG00000040005) #28	RABAC1 (ENSRBIG00000043920) #29	ERFL (ENSRBIG00000027943) #30	ARHGEF1 (ENSRBIG00000037210) #31	OLFM3 (ENSRBIG00000035890)
Golden snub-nosed monkey	MODERN SPECIES	826						CEACAM8 (ENSRROG00000030909) #10	ENSRROG00000031807 #11	CXCL17 (ENSRROG00000032330) #13	LIPE (ENSRROG00000031425) #14	CNFN (ENSRROG00000034326) #15	MEGF8 (ENSRROG00000029639) #16	TMEM145 (ENSRROG00000030044) #17	PRR19 (ENSRROG00000045744) #19	PAFAH1B3 (ENSRROG00000039439) #20	CIC (ENSRROG00000031194) #21	ERF (ENSRROG00000030775) #22	GSK3A (ENSRROG00000018920) #23	DEDD2 (ENSRROG00000036764) #24	POU2F2 (ENSRROG00000039207) #25	ENSRROG00000043003	ZNF574 (ENSRROG00000039347) #26	GRIK5 (ENSRROG00000023216) #27	ATP1A3 (ENSRROG00000030951) #28	RABAC1 (ENSRROG00000038065) #29
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.a #7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.b.b #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799.b #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549.b #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.b.a #11
Mas night monkey	MODERN SPECIES	472					CEACAM8 (ENSANAG00000030725) #10	ENSANAG00000024195 #11	ENSANAG00000013269	CXCL17 (ENSANAG00000034293) #13	LIPE (ENSANAG00000019026) #14	CNFN (ENSANAG00000028219) #15	MEGF8 (ENSANAG00000028714) #16	TMEM145 (ENSANAG00000022076) #17	PRR19 (ENSANAG00000035399) #19	ENSANAG00000000178 #20	CIC (ENSANAG00000025026) #21	ERF (ENSANAG00000029577) #22	GSK3A (ENSANAG00000035264) #23	ZNF526 (ENSANAG00000035364)	DEDD2 (ENSANAG00000028365) #24	POU2F2 (ENSANAG00000035824) #25	ZNF574 (ENSANAG00000034608) #26	GRIK5 (ENSANAG00000038058) #27	ATP1A3 (ENSANAG00000023145) #28	ENSANAG00000019937 #29	ERFL (ENSANAG00000027041) #30	ARHGEF1 (ENSANAG00000020006) #31	CD79A (ENSANAG00000034787) #32	RPS19 (ENSANAG00000036544) #33	DMRTC2 (ENSANAG00000033057) #34	LYPD4 (ENSANAG00000029410) #35	ENSANAG00000020658 #11
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.c.a.b.a #7	ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.b.b #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799.b #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549.b #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.a #11
Marmoset	MODERN SPECIES	14	ENSCJAG00000054047 ##35	ENSCJAG00000080826	ENSCJAG00000017073 #7	ENSCJAG00000047070 #7	CEACAM8 (ENSCJAG00000046660) #10	ENSCJAG00000079965	ENSCJAG00000012987 #11	CXCL17 (ENSCJAG00000012985) #13	LIPE (ENSCJAG00000012963) #14	CNFN (ENSCJAG00000012952) #15	ENSCJAG00000012930 #16	TMEM145 (ENSCJAG00000012919) #17	PRR19 (ENSCJAG00000012914) #19	PAFAH1B3 (ENSCJAG00000012900) #20	CIC (ENSCJAG00000012847) #21	ERF (ENSCJAG00000058052) #22	GSK3A (ENSCJAG00000012791) #23	ZNF526 (ENSCJAG00000012788)	DEDD2 (ENSCJAG00000012770) #24	POU2F2 (ENSCJAG00000012753) #25	ZNF574 (ENSCJAG00000043982) #26	GRIK5 (ENSCJAG00000012725) #27	ATP1A3 (ENSCJAG00000012623) #28	RABAC1 (ENSCJAG00000012607) #29	ERFL (ENSCJAG00000020277) #30	ARHGEF1 (ENSCJAG00000020252) #31	CD79A (ENSCJAG00000020247) #32	ENSCJAG00000020243 #33	DMRTC2 (ENSCJAG00000020238) #34	LYPD4 (ENSCJAG00000020234) #35	ENSCJAG00000037018 #11
Cebidae_a	ANCESTRAL SPECIES	55						ENSGT01100000263479.D.a.c.a.a.a.b #10	ENSGT01100000263479.D.a.c.a.a.a.a.b.b #11	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799.b #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549.b #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a.a.a.a.a #11
Capuchin	MODERN SPECIES	306						CEACAM8 (ENSCCAG00000022335) #10	ENSCCAG00000022166 #11	CXCL17 (ENSCCAG00000027291) #13	LIPE (ENSCCAG00000031538) #14	CNFN (ENSCCAG00000030183) #15	MEGF8 (ENSCCAG00000021324) #16	TMEM145 (ENSCCAG00000033785) #17	PRR19 (ENSCCAG00000028670) #19	PAFAH1B3 (ENSCCAG00000002974) #20	CIC (ENSCCAG00000035181) #21	ERF (ENSCCAG00000027152) #22	GSK3A (ENSCCAG00000038124) #23	ZNF526 (ENSCCAG00000019875)	DEDD2 (ENSCCAG00000034550) #24	POU2F2 (ENSCCAG00000035483) #25	ZNF574 (ENSCCAG00000032818) #26	GRIK5 (ENSCCAG00000037408) #27	ATP1A3 (ENSCCAG00000034309) #28	RABAC1 (ENSCCAG00000031894) #29	ERFL (ENSCCAG00000030582) #30	ARHGEF1 (ENSCCAG00000036552) #31	CD79A (ENSCCAG00000037944) #32	RPS19 (ENSCCAG00000033416) #33	DMRTC2 (ENSCCAG00000019056) #34	LYPD4 (ENSCCAG00000030413) #35	ENSCCAG00000038050 #11
Bolivian squirrel monkey	MODERN SPECIES	218					ENSSBOG00000030354 ##7	CEACAM8 (ENSSBOG00000025143) #10	ENSSBOG00000021420 #11	CXCL17 (ENSSBOG00000027519) #13	LIPE (ENSSBOG00000019446) #14	CNFN (ENSSBOG00000028577) #15	MEGF8 (ENSSBOG00000028003) #16	TMEM145 (ENSSBOG00000035029) #17	PRR19 (ENSSBOG00000019280) #19	PAFAH1B3 (ENSSBOG00000030086) #20	CIC (ENSSBOG00000013569) #21	ERF (ENSSBOG00000020853) #22	GSK3A (ENSSBOG00000022542) #23	ZNF526 (ENSSBOG00000019562)	DEDD2 (ENSSBOG00000030981) #24	POU2F2 (ENSSBOG00000024365) #25	ZNF574 (ENSSBOG00000027597) #26	GRIK5 (ENSSBOG00000022110) #27	ATP1A3 (ENSSBOG00000026931) #28	RABAC1 (ENSSBOG00000018697) #29	ERFL (ENSSBOG00000028753) #30	ARHGEF1 (ENSSBOG00000034166) #31	CD79A (ENSSBOG00000026660) #32	RPS19 (ENSSBOG00000026946) #33	DMRTC2 (ENSSBOG00000016003) #34	LYPD4 (ENSSBOG00000033436) #35	ENSSBOG00000031490 #11
Tarsier	MODERN SPECIES	1791																ERF (ENSTSYG00000006095) #22	GSK3A (ENSTSYG00000030603) #23	DEDD2 (ENSTSYG00000036999) #24
Strepsirrhini	ANCESTRAL SPECIES	16								ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b ##7
Bushbaby	MODERN SPECIES	267	XRCC1 (ENSOGAG00000009506)	ZNF575 (ENSOGAG00000027522)	ETHE1 (ENSOGAG00000009504)	PHLDB3 (ENSOGAG00000031884)	LYPD3 (ENSOGAG00000009282)	TEX101 (ENSOGAG00000009279) ##35	CD177 (ENSOGAG00000010373) ##35	ENSOGAG00000002909 ##7	LIPE (ENSOGAG00000013637) #14	CNFN (ENSOGAG00000032095) #15	MEGF8 (ENSOGAG00000013619) #16	TMEM145 (ENSOGAG00000027203) #17	PRR19 (ENSOGAG00000032028) #19	PAFAH1B3 (ENSOGAG00000030084) #20	CIC (ENSOGAG00000003964) #21	ERF (ENSOGAG00000033523) #22	GSK3A (ENSOGAG00000008509) #23	ZNF526 (ENSOGAG00000031877)	DEDD2 (ENSOGAG00000027751) #24	POU2F2 (ENSOGAG00000007840) #25	ZNF574 (ENSOGAG00000030944) #26	GRIK5 (ENSOGAG00000015433) #27	ATP1A3 (ENSOGAG00000004731) #28	RABAC1 (ENSOGAG00000001786) #29	ARHGEF1 (ENSOGAG00000005684) #31	CD79A (ENSOGAG00000012001) #32	RPS19 (ENSOGAG00000026255) #33	DMRTC2 (ENSOGAG00000011998) #34	LYPD4 (ENSOGAG00000025037) #35	ENSOGAG00000032743 ##7	ENSOGAG00000012575 ##7
Lemuriformes	ANCESTRAL SPECIES	15								ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a #7
Mouse lemur	MODERN SPECIES	14	CCDC106 (ENSMICG00000030139)	U2AF2 (ENSMICG00000027681)	EPN1 (ENSMICG00000030667)	ENSMICG00000031661	ENSMICG00000042403	ENSMICG00000045244 ##7	ENSMICG00000036846 ##7	CXCL17 (ENSMICG00000047306) #13	LIPE (ENSMICG00000015308) #14	CNFN (ENSMICG00000041430) #15	MEGF8 (ENSMICG00000015225) #16	TMEM145 (ENSMICG00000015206) #17	PRR19 (ENSMICG00000015202) #19	CIC (ENSMICG00000030301) #21	PAFAH1B3 (ENSMICG00000015196) #20	ERF (ENSMICG00000004694) #22	GSK3A (ENSMICG00000046754) #23	DEDD2 (ENSMICG00000015165) #24	POU2F2 (ENSMICG00000015156) #25	ZNF574 (ENSMICG00000014468) #26	GRIK5 (ENSMICG00000015136) #27	ATP1A3 (ENSMICG00000008581) #28	RABAC1 (ENSMICG00000008574) #29	ERFL (ENSMICG00000009519) #30	ARHGEF1 (ENSMICG00000009512) #31	CD79A (ENSMICG00000004558) #32	ENSMICG00000004554 #33	DMRTC2 (ENSMICG00000004546) #34	LYPD4 (ENSMICG00000004542) #35	ENSMICG00000009289	ENSMICG00000003336 ##7
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a.w ##35	ENSGT01100000263479.D.a.c.b.j.a ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.a #7
Coquerels sifaka	MODERN SPECIES	568	XRCC1 (ENSPCOG00000024704)	ZNF575 (ENSPCOG00000019955)	ETHE1 (ENSPCOG00000023403)	PHLDB3 (ENSPCOG00000026283)	LYPD3 (ENSPCOG00000013646)	TEX101 (ENSPCOG00000024580) ##35	CD177 (ENSPCOG00000005033) ##35	ENSPCOG00000018850 ##7	CXCL17 (ENSPCOG00000012786) #13	LIPE (ENSPCOG00000023640) #14	MEGF8 (ENSPCOG00000011104) #16	TMEM145 (ENSPCOG00000014640) #17	PRR19 (ENSPCOG00000013235) #19	ENSPCOG00000024389 #20	CIC (ENSPCOG00000000853) #21	ERF (ENSPCOG00000021324) #22	GSK3A (ENSPCOG00000018246) #23	DEDD2 (ENSPCOG00000016557) #24	POU2F2 (ENSPCOG00000014028) #25	ZNF574 (ENSPCOG00000026282) #26	GRIK5 (ENSPCOG00000024041) #27	ATP1A3 (ENSPCOG00000021213) #28	RABAC1 (ENSPCOG00000002815) #29	ERFL (ENSPCOG00000020979) #30	ARHGEF1 (ENSPCOG00000016706) #31	CD79A (ENSPCOG00000022258) #32	RPS19 (ENSPCOG00000009850) #33	DMRTC2 (ENSPCOG00000008626) #34	LYPD4 (ENSPCOG00000022609) #35	ENSPCOG00000017032 ##7	ENSPCOG00000007574 ##7
Greater bamboo lemur	MODERN SPECIES	426									LIPE (ENSPSMG00000017461) #14	CNFN (ENSPSMG00000017424) #15	MEGF8 (ENSPSMG00000017417) #16	TMEM145 (ENSPSMG00000017408) #17	PRR19 (ENSPSMG00000017364) #19	PAFAH1B3 (ENSPSMG00000017360) #20	CIC (ENSPSMG00000017260) #21	ERF (ENSPSMG00000017164) #22	GSK3A (ENSPSMG00000017100) #23	ZNF526 (ENSPSMG00000017031)	DEDD2 (ENSPSMG00000017024) #24	POU2F2 (ENSPSMG00000016965) #25	ZNF574 (ENSPSMG00000016813) #26	GRIK5 (ENSPSMG00000016806) #27	ATP1A3 (ENSPSMG00000016692) #28	ERFL (ENSPSMG00000016248) #30	ARHGEF1 (ENSPSMG00000016214) #31	CD79A (ENSPSMG00000016063) #32	RPS19 (ENSPSMG00000016049) #33	DMRTC2 (ENSPSMG00000016031) #34	LYPD4 (ENSPSMG00000016018) #35	ENSPSMG00000015967 #7
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Tree shrew	MODERN SPECIES	3510																ERF (ENSTBEG00000000114) #22	GSK3A (ENSTBEG00000000101) #23	ZNF526 (ENSTBEG00000000084)
Glires	ANCESTRAL SPECIES	6	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Lagomorpha	ANCESTRAL SPECIES	152	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00390000006319	ENSGT00940000160500	ENSGT01100000263479.D.a.c.a #7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26
Rabbit	MODERN SPECIES	522	EXOSC5 (ENSOCUG00000011497)	BCKDHA (ENSOCUG00000023789)	B3GNT8 (ENSOCUG00000027388)	ERICH4 (ENSOCUG00000029714)	DMAC2 (ENSOCUG00000029322)	ENSOCUG00000008689 #7	CXCL17 (ENSOCUG00000021666) #13	ENSOCUG00000035805	LIPE (ENSOCUG00000000017) #14	CNFN (ENSOCUG00000006494) #15	ENSOCUG00000006479 #16	TMEM145 (ENSOCUG00000004380) #17	PRR19 (ENSOCUG00000023652) #19	PAFAH1B3 (ENSOCUG00000006470) #20	CIC (ENSOCUG00000006458) #21	ERF (ENSOCUG00000039541) #22	GSK3A (ENSOCUG00000006441) #23	ZNF526 (ENSOCUG00000029615)	DEDD2 (ENSOCUG00000006435) #24	POU2F2 (ENSOCUG00000021776) #25	ZNF574 (ENSOCUG00000037409) #26
Rodentia	ANCESTRAL SPECIES	8	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.b ##7
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Kangaroo rat	MODERN SPECIES	475	Cadm4 (ENSDORG00000001271)	Zfp428 (ENSDORG00000028524)	Pinlyp (ENSDORG00000006113)	Xrcc1 (ENSDORG00000006108)	Ethe1 (ENSDORG00000002169)	Phldb3 (ENSDORG00000002164)	Lypd3 (ENSDORG00000010164)	ENSDORG00000006243 ##7	Lipe (ENSDORG00000007951) #14	Cnfn (ENSDORG00000007950) #15	Megf8 (ENSDORG00000007946) #16	Tmem145 (ENSDORG00000007941) #17	Prr19 (ENSDORG00000007940) #19	Pafah1b3 (ENSDORG00000008817) #20	Cic (ENSDORG00000008822) #21	Erf (ENSDORG00000008823) #22	Gsk3a (ENSDORG00000008826) #23	Zfp526 (ENSDORG00000024798)	Dedd2 (ENSDORG00000026250) #24	Pou2f2 (ENSDORG00000025719) #25	Zfp574 (ENSDORG00000009702) #26	Grik5 (ENSDORG00000013438) #27	Atp1a3 (ENSDORG00000006771) #28	Rabac1 (ENSDORG00000006773) #29	Erfl (ENSDORG00000024424) #30	Arhgef1 (ENSDORG00000010815) #31	Cd79a (ENSDORG00000010814) #32	ENSDORG00000010812 #33	Dmrtc2 (ENSDORG00000010810) #34	ENSDORG00000026563	Ttc9b (ENSDORG00000023658)
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.a.a ##7
Lesser Egyptian jerboa	MODERN SPECIES	186	ENSJJAG00000010772	Cyp2g1 (ENSJJAG00000009018)	ENSJJAG00000015776	Ethe1 (ENSJJAG00000013800)	ENSJJAG00000013197	Lypd3 (ENSJJAG00000012768)	ENSJJAG00000016385 ##7	ENSJJAG00000015232	ENSJJAG00000014623 #14	Cnfn (ENSJJAG00000013769) #15	ENSJJAG00000013061 #16	Tmem145 (ENSJJAG00000012149) #17	Prr19 (ENSJJAG00000011188) #19	Pafah1b3 (ENSJJAG00000010925) #20	Cic (ENSJJAG00000004156) #21	Erf (ENSJJAG00000000412) #22	Gsk3a (ENSJJAG00000000137) #23	Zfp526 (ENSJJAG00000014793)	ENSJJAG00000022418 #24	Pou2f2 (ENSJJAG00000022155) #25	Zfp574 (ENSJJAG00000021785) #26	Grik5 (ENSJJAG00000015626) #27	Atp1a3 (ENSJJAG00000012190) #28	Erfl (ENSJJAG00000003327) #30	Arhgef1 (ENSJJAG00000019422) #31	Cd79a (ENSJJAG00000016983) #32	ENSJJAG00000016317 ##33	Dmrtc2 (ENSJJAG00000016059) #34	Lypd4 (ENSJJAG00000015698) #35	Erich4 (ENSJJAG00000015588)	Dmac2 (ENSJJAG00000015253)
Muroidea	ANCESTRAL SPECIES	18	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.a.a ##7
Upper Galilee mountains blind mole rat	MODERN SPECIES	1327							ENSNGAG00000024225 #7	Lipe (ENSNGAG00000023105) #14	Cnfn (ENSNGAG00000005377) #15	Megf8 (ENSNGAG00000014330) #16	Tmem145 (ENSNGAG00000007684) #17	Prr19 (ENSNGAG00000012197) #19	Pafah1b3 (ENSNGAG00000017511) #20	ENSNGAG00000020734	ENSNGAG00000014614 #21	Erf (ENSNGAG00000005013) #22	Gsk3a (ENSNGAG00000018555) #23	Zfp526 (ENSNGAG00000018114)	Dedd2 (ENSNGAG00000021900) #24	Pou2f2 (ENSNGAG00000021598) #25	Zfp574 (ENSNGAG00000001555) #26	Grik5 (ENSNGAG00000024062) #27	Atp1a3 (ENSNGAG00000012235) #28	Rabac1 (ENSNGAG00000024184) #29	Erfl (ENSNGAG00000024008) #30	Arhgef1 (ENSNGAG00000004918) #31	Cd79a (ENSNGAG00000016621) #32	ENSNGAG00000023087	ENSNGAG00000015795 ##33	ENSNGAG00000015634 #35	Dmrtc2 (ENSNGAG00000006066) #34
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Mus	ANCESTRAL SPECIES		ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Mus_B	ANCESTRAL SPECIES		ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Mus_C	ANCESTRAL SPECIES	15	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
spretus	MODERN SPECIES	16	Tmem91 (MGP_SPRETEiJ_G0030473)	Exosc5 (MGP_SPRETEiJ_G0030472)	Bckdha (MGP_SPRETEiJ_G0030471)	B3gnt8 (MGP_SPRETEiJ_G0030470)	Dmac2 (MGP_SPRETEiJ_G0030469)	Erich4 (MGP_SPRETEiJ_G0030468)	MGP_SPRETEiJ_G0030467	Cxcl17 (MGP_SPRETEiJ_G0030466) #13	Lipe (MGP_SPRETEiJ_G0030465) #14	Cnfn (MGP_SPRETEiJ_G0030464) #15	Megf8 (MGP_SPRETEiJ_G0030463) #16	Tmem145 (MGP_SPRETEiJ_G0030462) #17	Prr19 (MGP_SPRETEiJ_G0030461) #19	Pafah1b3 (MGP_SPRETEiJ_G0030460) #20	Cic (MGP_SPRETEiJ_G0030459) #21	Erf (MGP_SPRETEiJ_G0030458) #22	Gsk3a (MGP_SPRETEiJ_G0030457) #23	Zfp526 (MGP_SPRETEiJ_G0030456)	Dedd2 (MGP_SPRETEiJ_G0030455) #24	Pou2f2 (MGP_SPRETEiJ_G0030454) #25	Zfp574 (MGP_SPRETEiJ_G0030453) #26	Grik5 (MGP_SPRETEiJ_G0030452) #27	Atp1a3 (MGP_SPRETEiJ_G0030451) #28	Rabac1 (MGP_SPRETEiJ_G0030450) #29	Arhgef1 (MGP_SPRETEiJ_G0030448) #31	Cd79a (MGP_SPRETEiJ_G0030447) #32	MGP_SPRETEiJ_G0030446 ##33	Dmrtc2 (MGP_SPRETEiJ_G0030445) #34	Lypd4 (MGP_SPRETEiJ_G0030444) #35	MGP_SPRETEiJ_G0030443 ##7	Cd177 (MGP_SPRETEiJ_G0030442) ##35
Steppe mouse	MODERN SPECIES	2675							ENSMSIG00000012187 #13	ENSMSIG00000012175	Lipe (ENSMSIG00000012081) #14	Cnfn (ENSMSIG00000012052) #15	Megf8 (ENSMSIG00000012015) #16	Tmem145 (ENSMSIG00000011940) #17	ENSMSIG00000011932 #19	Pafah1b3 (ENSMSIG00000011919) #20	Cic (ENSMSIG00000011872) #21	Erf (ENSMSIG00000011854) #22	ENSMSIG00000011846	Gsk3a (ENSMSIG00000011808) #23	Zfp526 (ENSMSIG00000011798)	Dedd2 (ENSMSIG00000011774) #24	ENSMSIG00000011759	Pou2f2 (ENSMSIG00000010661) #25	Zfp574 (ENSMSIG00000010639) #26	ENSMSIG00000010626	Grik5 (ENSMSIG00000010580) #27	Atp1a3 (ENSMSIG00000010376) #28	ENSMSIG00000010352 #29	Erfl (ENSMSIG00000010340) #30	Arhgef1 (ENSMSIG00000009574) #31	Cd79a (ENSMSIG00000009558) #32	ENSMSIG00000009499 ##33
Mouse	MODERN SPECIES	16	Exosc5 (ENSMUSG00000061286)	Bckdha (ENSMUSG00000060376)	B3gnt8 (ENSMUSG00000059479)	Dmac2 (ENSMUSG00000057229)	Erich4 (ENSMUSG00000074261)	Ceacam2 (ENSMUSG00000054385) ##7	Ceacam1 (ENSMUSG00000074272) ##7	Cxcl17 (ENSMUSG00000060188) #13	Lipe (ENSMUSG00000003123) #14	Cnfn (ENSMUSG00000063651) #15	Megf8 (ENSMUSG00000045039) #16	Tmem145 (ENSMUSG00000043843) #17	Prr19 (ENSMUSG00000058741) #19	Pafah1b3 (ENSMUSG00000005447) #20	Cic (ENSMUSG00000005442) #21	Erf (ENSMUSG00000040857) #22	Gsk3a (ENSMUSG00000057177) #23	Zfp526 (ENSMUSG00000046541)	Dedd2 (ENSMUSG00000054499) #24	Pou2f2 (ENSMUSG00000008496) #25	Zfp574 (ENSMUSG00000045252) #26	Grik5 (ENSMUSG00000003378) #27	Atp1a3 (ENSMUSG00000040907) #28	Rabac1 (ENSMUSG00000003380) #29	Erfl (ENSMUSG00000108367) #30	Arhgef1 (ENSMUSG00000040940) #31	Cd79a (ENSMUSG00000003379) #32	Rps19 (ENSMUSG00000040952) ##33	Dmrtc2 (ENSMUSG00000011349) #34	Lypd4 (ENSMUSG00000062732) #35	Tmsb10b (ENSMUSG00000091955)
Ryukyu mouse	MODERN SPECIES	16	Exosc5 (MGP_CAROLIEiJ_G0029376)	Bckdha (MGP_CAROLIEiJ_G0029375)	B3gnt8 (MGP_CAROLIEiJ_G0029374)	Dmac2 (MGP_CAROLIEiJ_G0029373)	Erich4 (MGP_CAROLIEiJ_G0029372)	MGP_CAROLIEiJ_G0029371 ##7	MGP_CAROLIEiJ_G0029370 ##7	Cxcl17 (MGP_CAROLIEiJ_G0029369) #13	Lipe (MGP_CAROLIEiJ_G0029368) #14	Cnfn (MGP_CAROLIEiJ_G0029367) #15	Megf8 (MGP_CAROLIEiJ_G0029366) #16	Tmem145 (MGP_CAROLIEiJ_G0029365) #17	Prr19 (MGP_CAROLIEiJ_G0029364) #19	Pafah1b3 (MGP_CAROLIEiJ_G0029363) #20	Cic (MGP_CAROLIEiJ_G0029362) #21	Erf (MGP_CAROLIEiJ_G0029361) #22	Gsk3a (MGP_CAROLIEiJ_G0029360) #23	Zfp526 (MGP_CAROLIEiJ_G0029359)	Dedd2 (MGP_CAROLIEiJ_G0029358) #24	Pou2f2 (MGP_CAROLIEiJ_G0029357) #25	Zfp574 (MGP_CAROLIEiJ_G0029356) #26	Grik5 (MGP_CAROLIEiJ_G0029355) #27	Atp1a3 (MGP_CAROLIEiJ_G0029354) #28	Rabac1 (MGP_CAROLIEiJ_G0029353) #29	Arhgef1 (MGP_CAROLIEiJ_G0029351) #31	Cd79a (MGP_CAROLIEiJ_G0029350) #32	MGP_CAROLIEiJ_G0029349 ##33	Dmrtc2 (MGP_CAROLIEiJ_G0029348) #34	Lypd4 (MGP_CAROLIEiJ_G0029347) #35	Ceacam10 (MGP_CAROLIEiJ_G0029346) ##7	Tex101 (MGP_CAROLIEiJ_G0029345) ##35
Shrew mouse	MODERN SPECIES	10	Exosc5 (MGP_PahariEiJ_G0021229)	Bckdha (MGP_PahariEiJ_G0021228)	B3gnt8 (MGP_PahariEiJ_G0021227)	Dmac2 (MGP_PahariEiJ_G0021226)	Erich4 (MGP_PahariEiJ_G0021225)	MGP_PahariEiJ_G0021224 ##7	MGP_PahariEiJ_G0021223 ##7	Cxcl17 (MGP_PahariEiJ_G0021222) #13	Lipe (MGP_PahariEiJ_G0021221) #14	Cnfn (MGP_PahariEiJ_G0021220) #15	Megf8 (MGP_PahariEiJ_G0021219) #16	Tmem145 (MGP_PahariEiJ_G0021218) #17	Prr19 (MGP_PahariEiJ_G0021217) #19	Pafah1b3 (MGP_PahariEiJ_G0021216) #20	Cic (MGP_PahariEiJ_G0021215) #21	Erf (MGP_PahariEiJ_G0021214) #22	Gsk3a (MGP_PahariEiJ_G0021213) #23	Zfp526 (MGP_PahariEiJ_G0021212)	Dedd2 (MGP_PahariEiJ_G0021211) #24	Pou2f2 (MGP_PahariEiJ_G0021210) #25	Zfp574 (MGP_PahariEiJ_G0021209) #26	Grik5 (MGP_PahariEiJ_G0021208) #27	Atp1a3 (MGP_PahariEiJ_G0021207) #28	MGP_PahariEiJ_G0021206 #29	Arhgef1 (MGP_PahariEiJ_G0021204) #31	Cd79a (MGP_PahariEiJ_G0021203) #32	MGP_PahariEiJ_G0021202 ##33	Dmrtc2 (MGP_PahariEiJ_G0021201) #34	Lypd4 (MGP_PahariEiJ_G0021200) #35	Ceacam10 (MGP_PahariEiJ_G0021199) ##7	Cd177 (MGP_PahariEiJ_G0021198) ##35
Rat	MODERN SPECIES		Exosc5 (ENSRNOG00000020635)	Bckdha (ENSRNOG00000020607)	B3gnt8 (ENSRNOG00000068024)	Dmac2 (ENSRNOG00000020596)	Erich4 (ENSRNOG00000037798)	Ceacam1 (ENSRNOG00000020578) ##7	Cxcl17 (ENSRNOG00000037814) #13	AC121639.1 (ENSRNOG00000020538)	Lipe (ENSRNOG00000020546) #14	Cnfn (ENSRNOG00000020530) #15	Megf8 (ENSRNOG00000052687) #16	Tmem145 (ENSRNOG00000020489) #17	Prr19 (ENSRNOG00000043154) #19	Pafah1b3 (ENSRNOG00000020481) #20	Cic (ENSRNOG00000056118) #21	Erf (ENSRNOG00000020426) #22	Gsk3a (ENSRNOG00000020417) #23	Zfp526 (ENSRNOG00000047526)	Dedd2 (ENSRNOG00000046112) #24	Pou2f2 (ENSRNOG00000055650) #25	Zfp574 (ENSRNOG00000055761) #26	Grik5 (ENSRNOG00000020310) #27	Atp1a3 (ENSRNOG00000020263) #28	Rabac1 (ENSRNOG00000020233) #29	Erfl (ENSRNOG00000068986) #30	Arhgef1 (ENSRNOG00000020130) #31	Cd79a (ENSRNOG00000020125) #32	Rps19 (ENSRNOG00000037897) ##33	Dmrtc2 (ENSRNOG00000020109) #34	Lypd4 (ENSRNOG00000020098) #35	Ceacam6 (ENSRNOG00000030331) ##7
Cricetidae	ANCESTRAL SPECIES	26							ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.o.b ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35
Cricetidae_B	ANCESTRAL SPECIES	41	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a.z ##35	ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00960000192716	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.o.b ##33	ENSGT00390000013102.f.p ##33	ENSGT00940000161904 #34
Northern American deer mouse	MODERN SPECIES		Bckdha (ENSPEMG00000018189)	B3gnt8 (ENSPEMG00000005745)	Dmac2 (ENSPEMG00000010806)	Erich4 (ENSPEMG00000029662)	ENSPEMG00000031064 ##7	ENSPEMG00000017731	ENSPEMG00000012395 ##7	Cxcl17 (ENSPEMG00000013212) #13	Lipe (ENSPEMG00000018430) #14	Cnfn (ENSPEMG00000008799) #15	Megf8 (ENSPEMG00000015992) #16	Tmem145 (ENSPEMG00000008836) #17	Prr19 (ENSPEMG00000017854) #19	Pafah1b3 (ENSPEMG00000009631) #20	Cic (ENSPEMG00000009522) #21	Erf (ENSPEMG00000015322) #22	Gsk3a (ENSPEMG00000009695) #23	Zfp526 (ENSPEMG00000000499)	Dedd2 (ENSPEMG00000029729) #24	ENSPEMG00000024366	Pou2f2 (ENSPEMG00000019227) #25	Zfp574 (ENSPEMG00000016061) #26	Grik5 (ENSPEMG00000017219) #27	Atp1a3 (ENSPEMG00000011099) #28	Rabac1 (ENSPEMG00000002744) #29	Erfl (ENSPEMG00000018034) #30	Arhgef1 (ENSPEMG00000012222) #31	Cd79a (ENSPEMG00000015673) #32	Rps19 (ENSPEMG00000015926) ##33	Dmrtc2 (ENSPEMG00000002536) #34	Lypd4 (ENSPEMG00000007549) #35
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	354	Ccdc97 (ENSMOCG00000000596)	Hnrnpul1 (ENSMOCG00000008200)	Axl (ENSMOCG00000014019)	Cyp2s1 (ENSMOCG00000019209)	ENSMOCG00000002001	ENSMOCG00000017362 ##7	ENSMOCG00000002667 ##7	Cxcl17 (ENSMOCG00000013452) #13	Lipe (ENSMOCG00000004098) #14	Cnfn (ENSMOCG00000010534) #15	Megf8 (ENSMOCG00000009971) #16	Tmem145 (ENSMOCG00000011577) #17	Prr19 (ENSMOCG00000022197) #19	Pafah1b3 (ENSMOCG00000011582) #20	Cic (ENSMOCG00000012897) #21	Erf (ENSMOCG00000009581) #22	Gsk3a (ENSMOCG00000013617) #23	Zfp526 (ENSMOCG00000022993)	Dedd2 (ENSMOCG00000017087) #24	Pou2f2 (ENSMOCG00000015602) #25	Zfp574 (ENSMOCG00000016268) #26	Grik5 (ENSMOCG00000001917) #27	Atp1a3 (ENSMOCG00000015750) #28	Rabac1 (ENSMOCG00000002729) #29	ENSMOCG00000011140 #22	Arhgef1 (ENSMOCG00000009746) #31	Rps19 (ENSMOCG00000022408) ##33	Dmrtc2 (ENSMOCG00000018292) #34	Lypd4 (ENSMOCG00000008530) #35	ENSMOCG00000015518	Ethe1 (ENSMOCG00000006120)
Prairie vole	MODERN SPECIES	354	Cnfn (ENSMOCG00000010534) #15	Megf8 (ENSMOCG00000009971) #16	Tmem145 (ENSMOCG00000011577) #17	Prr19 (ENSMOCG00000022197) #19	Pafah1b3 (ENSMOCG00000011582) #20	Cic (ENSMOCG00000012897) #21	Erf (ENSMOCG00000009581) #22	Gsk3a (ENSMOCG00000013617) #23	Zfp526 (ENSMOCG00000022993)	Dedd2 (ENSMOCG00000017087) #24	Pou2f2 (ENSMOCG00000015602) #25	Zfp574 (ENSMOCG00000016268) #26	Grik5 (ENSMOCG00000001917) #27	Atp1a3 (ENSMOCG00000015750) #28	Rabac1 (ENSMOCG00000002729) #29	ENSMOCG00000011140 #22	Arhgef1 (ENSMOCG00000009746) #31	Rps19 (ENSMOCG00000022408) ##33	Dmrtc2 (ENSMOCG00000018292) #34	Lypd4 (ENSMOCG00000008530) #35	ENSMOCG00000015518	Ethe1 (ENSMOCG00000006120)	Zfp575 (ENSMOCG00000017783)	Xrcc1 (ENSMOCG00000022521)	Pinlyp (ENSMOCG00000013333)	Irgq (ENSMOCG00000013018)	ENSMOCG00000012553	Cadm4 (ENSMOCG00000016755)	Irgc1 (ENSMOCG00000012592)	Smg9 (ENSMOCG00000014343)	Kcnn4 (ENSMOCG00000004304)
Cricetinae	ANCESTRAL SPECIES	34						ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT00390000002861 #13	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.o.b ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Golden Hamster	MODERN SPECIES	863						ENSMAUG00000000868 ##7	Cxcl17 (ENSMAUG00000016706) #13	ENSMAUG00000004744	Lipe (ENSMAUG00000004660) #14	Cnfn (ENSMAUG00000021910) #15	Megf8 (ENSMAUG00000017117) #16	Tmem145 (ENSMAUG00000012415) #17	Prr19 (ENSMAUG00000005563) #19	Pafah1b3 (ENSMAUG00000009456) #20	Cic (ENSMAUG00000001079) #21	Erf (ENSMAUG00000008527) #22	Gsk3a (ENSMAUG00000014364) #23	Zfp526 (ENSMAUG00000016121)	Dedd2 (ENSMAUG00000014233) #24	Pou2f2 (ENSMAUG00000010807) #25	Zfp574 (ENSMAUG00000018252) #26	Grik5 (ENSMAUG00000004340) #27	Erfl (ENSMAUG00000020529) #30	Arhgef1 (ENSMAUG00000013887) #31	ENSMAUG00000011201 ##33	Dmrtc2 (ENSMAUG00000016876) #34	Lypd4 (ENSMAUG00000012812) #35	Cd177 (ENSMAUG00000013142) ##35
Chinese hamster chok1gshd	MODERN SPECIES	295							Cxcl17 (ENSCGRG00001017481) #13	ENSCGRG00001023649	Lipe (ENSCGRG00001001445) #14	Cnfn (ENSCGRG00001021600) #15	Megf8 (ENSCGRG00001015887) #16	Tmem145 (ENSCGRG00001023312) #17	Prr19 (ENSCGRG00001013680) #19	Pafah1b3 (ENSCGRG00001008696) #20	Cic (ENSCGRG00001017203) #21	Erf (ENSCGRG00001022509) #22	Gsk3a (ENSCGRG00001015543) #23	Zfp526 (ENSCGRG00001008967)	Dedd2 (ENSCGRG00001011876) #24	Pou2f2 (ENSCGRG00001013142) #25	Zfp574 (ENSCGRG00001001429) #26	Grik5 (ENSCGRG00001001142) #27	Atp1a3 (ENSCGRG00001010759) #28	Rabac1 (ENSCGRG00001021463) #29	Erfl (ENSCGRG00001017704) #30	Arhgef1 (ENSCGRG00001000673) #31	Cd79a (ENSCGRG00001018881) #32	ENSCGRG00001017202 ##33	Dmrtc2 (ENSCGRG00001016626) #34	Lypd4 (ENSCGRG00001023965) #35	Erich4 (ENSCGRG00001023074)
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.b ##7
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.b.a ##7
Eurasian red squirrel	MODERN SPECIES	8	B3GNT8 (ENSSVLG00005023527)	DMAC2 (ENSSVLG00005023559)	ERICH4 (ENSSVLG00005023663)	ENSSVLG00005023751 ##7	ENSSVLG00005024022	ENSSVLG00005024078 ##7	CXCL17 (ENSSVLG00005024192) #13	ENSSVLG00005024214	LIPE (ENSSVLG00005024237) #14	CNFN (ENSSVLG00005024319) #15	MEGF8 (ENSSVLG00005024356) #16	TMEM145 (ENSSVLG00005024411) #17	PRR19 (ENSSVLG00005024445) #19	PAFAH1B3 (ENSSVLG00005024469) #20	CIC (ENSSVLG00005024515) #21	ERF (ENSSVLG00005024686) #22	GSK3A (ENSSVLG00005024717) #23	ZNF526 (ENSSVLG00005024751)	DEDD2 (ENSSVLG00005024774) #24	POU2F2 (ENSSVLG00005024957) #25	ZNF574 (ENSSVLG00005025008) #26	GRIK5 (ENSSVLG00005025036) #27	ATP1A3 (ENSSVLG00005025087) #28	RABAC1 (ENSSVLG00005025214) #29	ERFL (ENSSVLG00005025238) #30	ARHGEF1 (ENSSVLG00005025285) #31	CD79A (ENSSVLG00005025331) #32	RPS19 (ENSSVLG00005025346) #33	DMRTC2 (ENSSVLG00005025370) #34	LYPD4 (ENSSVLG00005025397) #35	ENSSVLG00005025430 ##7
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.b.b ##7	ENSGT01100000263479.D.a.c.b.a.b ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.b.a ##7
Alpin marmot	MODERN SPECIES	45	DMAC2 (ENSMMMG00000019632)	ERICH4 (ENSMMMG00000019627)	ENSMMMG00000019076 ##7	ENSMMMG00000018966 ##7	CXCL17 (ENSMMMG00000018960) #13	ENSMMMG00000018958	ENSMMMG00000018948	LIPE (ENSMMMG00000018935) #14	CNFN (ENSMMMG00000018928) #15	MEGF8 (ENSMMMG00000018897) #16	TMEM145 (ENSMMMG00000018870) #17	ENSMMMG00000018865	PRR19 (ENSMMMG00000018862) #19	PAFAH1B3 (ENSMMMG00000018822) #20	CIC (ENSMMMG00000018746) #21	ERF (ENSMMMG00000018735) #22	GSK3A (ENSMMMG00000018714) #23	ZNF526 (ENSMMMG00000018710)	DEDD2 (ENSMMMG00000018702) #24	POU2F2 (ENSMMMG00000018186) #25	ZNF574 (ENSMMMG00000018163) #26	GRIK5 (ENSMMMG00000018145) #27	ATP1A3 (ENSMMMG00000018094) #28	RABAC1 (ENSMMMG00000018088) #29	ERFL (ENSMMMG00000018083) #30	ARHGEF1 (ENSMMMG00000016411) #31	CD79A (ENSMMMG00000016388) #32	RPS19 (ENSMMMG00000016380) #33	DMRTC2 (ENSMMMG00000016375) #34	LYPD4 (ENSMMMG00000016374) #35	ENSMMMG00000016289 ##7
Marmotini_b	ANCESTRAL SPECIES	49					ENSGT01100000263479.D.a.c.b.a.a ##7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.c.b.b.a ##7
Arctic ground squirrel	MODERN SPECIES	297					ENSUPAG00010001516 ##7	CXCL17 (ENSUPAG00010001506) #13	ENSUPAG00010001502	ENSUPAG00010001487	LIPE (ENSUPAG00010001422) #14	CNFN (ENSUPAG00010001399) #15	MEGF8 (ENSUPAG00010001326) #16	TMEM145 (ENSUPAG00010001258) #17	PRR19 (ENSUPAG00010001251) #19	PAFAH1B3 (ENSUPAG00010001213) #20	CIC (ENSUPAG00010000939) #21	ERF (ENSUPAG00010000918) #22	GSK3A (ENSUPAG00010000883) #23	ZNF526 (ENSUPAG00010000881)	DEDD2 (ENSUPAG00010000870) #24	POU2F2 (ENSUPAG00010000238) #25	ZNF574 (ENSUPAG00010000222) #26	GRIK5 (ENSUPAG00010000202) #27	ATP1A3 (ENSUPAG00010000095) #28	RABAC1 (ENSUPAG00010000053) #29	ERFL (ENSUPAG00010021971) #30	ARHGEF1 (ENSUPAG00010021957) #31	CD79A (ENSUPAG00010021954) #32	RPS19 (ENSUPAG00010021947) ##33	DMRTC2 (ENSUPAG00010021944) #34	LYPD4 (ENSUPAG00010021943) #35	ENSUPAG00010021938 ##7
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	306								CXCL17 (ENSSTOG00000011599) #13	Lipe (ENSSTOG00000011564) #14	CNFN (ENSSTOG00000020414) #15	MEGF8 (ENSSTOG00000000868) #16	TMEM145 (ENSSTOG00000022861) #17	PRR19 (ENSSTOG00000024823) #19	PAFAH1B3 (ENSSTOG00000000864) #20	CIC (ENSSTOG00000000852) #21	ERF (ENSSTOG00000000849) #22	GSK3A (ENSSTOG00000000841) #23	ZNF526 (ENSSTOG00000019390)	DEDD2 (ENSSTOG00000020972) #24	POU2F2 (ENSSTOG00000021390) #25	ZNF574 (ENSSTOG00000028612) #26	GRIK5 (ENSSTOG00000011995) #27	ATP1A3 (ENSSTOG00000004030) #28	RABAC1 (ENSSTOG00000022795) #29	ENSSTOG00000032462 #22	ARHGEF1 (ENSSTOG00000003526) #31	CD79A (ENSSTOG00000003518) #32	ENSSTOG00000003502 ##33	DMRTC2 (ENSSTOG00000003484) #34	LYPD3 (ENSSTOG00000003599)	ENSSTOG00000028708
Squirrel	MODERN SPECIES	306	CNFN (ENSSTOG00000020414) #15	MEGF8 (ENSSTOG00000000868) #16	TMEM145 (ENSSTOG00000022861) #17	PRR19 (ENSSTOG00000024823) #19	PAFAH1B3 (ENSSTOG00000000864) #20	CIC (ENSSTOG00000000852) #21	ERF (ENSSTOG00000000849) #22	GSK3A (ENSSTOG00000000841) #23	ZNF526 (ENSSTOG00000019390)	DEDD2 (ENSSTOG00000020972) #24	POU2F2 (ENSSTOG00000021390) #25	ZNF574 (ENSSTOG00000028612) #26	GRIK5 (ENSSTOG00000011995) #27	ATP1A3 (ENSSTOG00000004030) #28	RABAC1 (ENSSTOG00000022795) #29	ENSSTOG00000032462 #22	ARHGEF1 (ENSSTOG00000003526) #31	CD79A (ENSSTOG00000003518) #32	ENSSTOG00000003502 ##33	DMRTC2 (ENSSTOG00000003484) #34	LYPD3 (ENSSTOG00000003599)	ENSSTOG00000028708	ETHE1 (ENSSTOG00000023958)	XRCC1 (ENSSTOG00000019809)	ZNF575 (ENSSTOG00000011869)	PINLYP (ENSSTOG00000011848)	IRGQ (ENSSTOG00000011844)	ZNF576 (ENSSTOG00000011841)	ZNF428 (ENSSTOG00000028157)	CADM4 (ENSSTOG00000012569)	IRGC (ENSSTOG00000028903)
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.b ##7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Naked mole-rat female	MODERN SPECIES	21	TMEM91 (ENSHGLG00000036227)	EXOSC5 (ENSHGLG00000008975)	BCKDHA (ENSHGLG00000050952)	B3GNT8 (ENSHGLG00000010364)	ERICH4 (ENSHGLG00000048703)	ENSHGLG00000011199 ##7	ENSHGLG00000009638 #13	ATP5SL (ENSHGLG00000039004)	LIPE (ENSHGLG00000002222) #14	CNFN (ENSHGLG00000046457) #15	MEGF8 (ENSHGLG00000010524) #16	TMEM145 (ENSHGLG00000010011) #17	PRR19 (ENSHGLG00000003163) #19	PAFAH1B3 (ENSHGLG00000003652) #20	CIC (ENSHGLG00000019229) #21	ERF (ENSHGLG00000003539) #22	GSK3A (ENSHGLG00000004094) #23	ZNF526 (ENSHGLG00000002054)	DEDD2 (ENSHGLG00000002113) #24	POU2F2 (ENSHGLG00000002691) #25	ZNF574 (ENSHGLG00000003903) #26	GRIK5 (ENSHGLG00000004011) #27	ATP1A3 (ENSHGLG00000004227) #28	RABAC1 (ENSHGLG00000006853) #29	ERFL (ENSHGLG00000002910) #30	ARHGEF1 (ENSHGLG00000003059) #31	CD79A (ENSHGLG00000001725) #32	ENSHGLG00000040845	ENSHGLG00000050295 ##33	ENSHGLG00000002035 #34	LYPD4 (ENSHGLG00000002114) #35
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a.z ##35
Long-tailed chinchilla	MODERN SPECIES	262	TMEM91 (ENSCLAG00000000996)	EXOSC5 (ENSCLAG00000001186)	BCKDHA (ENSCLAG00000000736)	B3GNT8 (ENSCLAG00000001017)	DMAC2 (ENSCLAG00000001090)	ERICH4 (ENSCLAG00000000843)	ENSCLAG00000001267 #7	CXCL17 (ENSCLAG00000001312) #13	LIPE (ENSCLAG00000001355) #14	CNFN (ENSCLAG00000001511) #15	MEGF8 (ENSCLAG00000002648) #16	TMEM145 (ENSCLAG00000003087) #17	PRR19 (ENSCLAG00000000685) #19	PAFAH1B3 (ENSCLAG00000000723) #20	CIC (ENSCLAG00000000862) #21	ERF (ENSCLAG00000002511) #22	GSK3A (ENSCLAG00000002825) #23	ZNF526 (ENSCLAG00000002951)	DEDD2 (ENSCLAG00000002983) #24	POU2F2 (ENSCLAG00000004593) #25	ZNF574 (ENSCLAG00000006252) #26	GRIK5 (ENSCLAG00000006835) #27	ATP1A3 (ENSCLAG00000001351) #28	RABAC1 (ENSCLAG00000001671) #29	ERFL (ENSCLAG00000001752) #30	ENSCLAG00000001895 #31	CD79A (ENSCLAG00000001020) #32	RPS19 (ENSCLAG00000001110) ##33	DMRTC2 (ENSCLAG00000001131) #34	LYPD4 (ENSCLAG00000001144) #35	TEX101 (ENSCLAG00000001178) ##35
Degu	MODERN SPECIES	238					ENSODEG00000010092 ##7	ENSODEG00000010781 ##7	ENSODEG00000019766	CXCL17 (ENSODEG00000010054) #13	LIPE (ENSODEG00000009773) #14	CNFN (ENSODEG00000010917) #15	MEGF8 (ENSODEG00000010413) #16	TMEM145 (ENSODEG00000010150) #17	PRR19 (ENSODEG00000009341) #19	PAFAH1B3 (ENSODEG00000011390) #20	CIC (ENSODEG00000011664) #21	ERF (ENSODEG00000009178) #22	GSK3A (ENSODEG00000014312) #23	ZNF526 (ENSODEG00000019954)	DEDD2 (ENSODEG00000010982) #24	POU2F2 (ENSODEG00000011310) #25	ZNF574 (ENSODEG00000013318) #26	GRIK5 (ENSODEG00000012165) #27	ATP1A3 (ENSODEG00000009220) #28	RABAC1 (ENSODEG00000008871) #29	ERFL (ENSODEG00000009283) #30	ARHGEF1 (ENSODEG00000009700) #31	CD79A (ENSODEG00000009588) #32	RPS19 (ENSODEG00000009249) #33	DMRTC2 (ENSODEG00000009170) #34	LYPD4 (ENSODEG00000009945) #35	ENSODEG00000009641 ##35
Guinea pig	MODERN SPECIES	80	IDO2 (ENSCPOG00000033051)	IDO1 (ENSCPOG00000014771)	ENSCPOG00000015304	ENSCPOG00000008853	ENSCPOG00000030322 ##7	ENSCPOG00000012967	ENSCPOG00000007329 ##7	CXCL17 (ENSCPOG00000039366) #13	LIPE (ENSCPOG00000020887) #14	CNFN (ENSCPOG00000034761) #15	MEGF8 (ENSCPOG00000012979) #16	TMEM145 (ENSCPOG00000012974) #17	PRR19 (ENSCPOG00000024016) #19	PAFAH1B3 (ENSCPOG00000004397) #20	CIC (ENSCPOG00000004391) #21	ENSCPOG00000001808 #22	GSK3A (ENSCPOG00000026896) #23	ZNF526 (ENSCPOG00000034474)	DEDD2 (ENSCPOG00000019827) #24	POU2F2 (ENSCPOG00000000781) #25	ZNF574 (ENSCPOG00000000780) #26	GRIK5 (ENSCPOG00000018909) #27	ATP1A3 (ENSCPOG00000010576) #28	RABAC1 (ENSCPOG00000021982) #29	ENSCPOG00000031488 #31	ENSCPOG00000034092 #31	CD79A (ENSCPOG00000011889) #32	RPS19 (ENSCPOG00000025140) ##33	DMRTC2 (ENSCPOG00000001805) #34	LYPD4 (ENSCPOG00000001804) #35	ENSCPOG00000030020 ##35
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.a.c.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b #7
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157292 #22
Common shrew	MODERN SPECIES	6774																ENSSARG00000002932 #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	914																ERF (ENSEEUG00000009204) #22
Hedgehog	MODERN SPECIES	14942																ENSEEUG00000012991 #22
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01030000237327	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b #7
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b #7
Suina	ANCESTRAL SPECIES	2	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.a.c.a.b.a #7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00390000002861 #13
Pig	MODERN SPECIES	14	TMEM91 (ENSSSCG00000057647)	EXOSC5 (ENSSSCG00000003015)	BCKDHA (ENSSSCG00000028794)	B3GNT8 (ENSSSCG00000032536)	DMAC2 (ENSSSCG00000032711)	ERICH4 (ENSSSCG00000040022)	ENSSSCG00000020837 #7	ENSSSCG00000033133	LIPE (ENSSSCG00000003018) #14	CNFN (ENSSSCG00000027022) #15	ENSSSCG00000059920 #16	PAFAH1B3 (ENSSSCG00000029070) #20	TMEM145 (ENSSSCG00000003022) #17	PRR19 (ENSSSCG00000003024) #19	CIC (ENSSSCG00000003030) #21	ERF (ENSSSCG00000032154) #22	GSK3A (ENSSSCG00000003035) #23	ZNF526 (ENSSSCG00000028054)	DEDD2 (ENSSSCG00000030182) #24	POU2F2 (ENSSSCG00000037132) #25	ZNF574 (ENSSSCG00000003037) #26	GRIK5 (ENSSSCG00000003038) #27	ATP1A3 (ENSSSCG00000003045) #28	ENSSSCG00000049078	RABAC1 (ENSSSCG00000003046) #29	ERFL (ENSSSCG00000003049) #30	ARHGEF1 (ENSSSCG00000003040) #31	CD79A (ENSSSCG00000033684) #32	RPS19 (ENSSSCG00000003042) #33	LYPD4 (ENSSSCG00000003044) #35	DMRTC2 (ENSSSCG00000003043) #34
Chacoan peccary	MODERN SPECIES	800																ERF (ENSCWAG00000007418) #22	GSK3A (ENSCWAG00000007462) #23	ZNF526 (ENSCWAG00000007534)	DEDD2 (ENSCWAG00000007541) #24	POU2F2 (ENSCWAG00000007609) #25	ZNF574 (ENSCWAG00000009443) #26	GRIK5 (ENSCWAG00000009477) #27	ATP1A3 (ENSCWAG00000009866) #28	RABAC1 (ENSCWAG00000010344) #29	ERFL (ENSCWAG00000010386) #30	ARHGEF1 (ENSCWAG00000010430) #31	CD79A (ENSCWAG00000010605) #32	RPS19 (ENSCWAG00000010660) #33	DMRTC2 (ENSCWAG00000010721) #34	LYPD4 (ENSCWAG00000010786) #35	ENSCWAG00000010827 #13
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a ##35
Camelidae	ANCESTRAL SPECIES	15	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b #7
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	35	B3GNT8 (ENSCDRG00005016531)	DMAC2 (ENSCDRG00005016562)	ERICH4 (ENSCDRG00005016660)	ENSCDRG00005016719 #7	ENSCDRG00005017139 #13	ENSCDRG00005017153 ##7	ENSCDRG00005017189	LIPE (ENSCDRG00005017218) #14	ENSCDRG00005017296	CNFN (ENSCDRG00005017339) #15	ENSCDRG00005017359 #16	TMEM145 (ENSCDRG00005017397) #17	PRR19 (ENSCDRG00005017429) #19	PAFAH1B3 (ENSCDRG00005017451) #20	CIC (ENSCDRG00005017516) #21	ERF (ENSCDRG00005017683) #22	GSK3A (ENSCDRG00005017728) #23	ZNF526 (ENSCDRG00005017810)	DEDD2 (ENSCDRG00005017828) #24	POU2F2 (ENSCDRG00005017912) #25	ZNF574 (ENSCDRG00005018127) #26	GRIK5 (ENSCDRG00005018143) #27	ATP1A3 (ENSCDRG00005018181) #28	RABAC1 (ENSCDRG00005018418) #29	ERFL (ENSCDRG00005018480) #30	ARHGEF1 (ENSCDRG00005018539) #31	CD79A (ENSCDRG00005018664) #32	ENSCDRG00005018687 #33	DMRTC2 (ENSCDRG00005018727) #34	LYPD4 (ENSCDRG00005018778) #35	ENSCDRG00005018844 #7
Arabian camel	MODERN SPECIES	3	AQP5 (ENSCDRG00005005200)	AQP2 (ENSCDRG00005005216)	FAIM2 (ENSCDRG00005005232)	BCDIN3D (ENSCDRG00005005337)	NCKAP5L (ENSCDRG00005005281)	TMBIM6 (ENSCDRG00005005361)	FMNL3 (ENSCDRG00005005419)	PRPF40B (ENSCDRG00005005701)	FAM186B (ENSCDRG00005005785)	MCRS1 (ENSCDRG00005005807)	KCNH3 (ENSCDRG00005005950)	SPATS2 (ENSCDRG00005005992)	DNAJC22 (ENSCDRG00005006038)	C1QL4 (ENSCDRG00005006050)	TROAP (ENSCDRG00005006077)	ENSCDRG00005006108 #22	PRPH (ENSCDRG00005006126)	ENSCDRG00005006150	ENSCDRG00005006163	LMBR1L (ENSCDRG00005006301)	DHH (ENSCDRG00005006364)	RHEBL1 (ENSCDRG00005006397)	KMT2D (ENSCDRG00005006455)	PRKAG1 (ENSCDRG00005006815)	DDN (ENSCDRG00005007430)	WNT1 (ENSCDRG00005007459)	WNT10B (ENSCDRG00005007497)	ARF3 (ENSCDRG00005007669)	FKBP11 (ENSCDRG00005007776)	CCDC65 (ENSCDRG00005007938)	RND1 (ENSCDRG00005007992)
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b #7
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Yarkand deer	MODERN SPECIES	27	CCDC97 (ENSCHYG00000027179)	TGFB1 (ENSCHYG00000027180)	B9D2 (ENSCHYG00000027181)	BCKDHA (ENSCHYG00000027182)	ENSCHYG00000027183	B3GNT8 (ENSCHYG00000027184)	DMAC2 (ENSCHYG00000027185)	ERICH4 (ENSCHYG00000000043)	LIPE (ENSCHYG00000000071) #14	CNFN (ENSCHYG00000000115) #15	MEGF8 (ENSCHYG00000000158) #16	TMEM145 (ENSCHYG00000000283) #17	PRR19 (ENSCHYG00000000321) #19	PAFAH1B3 (ENSCHYG00000000329) #20	CIC (ENSCHYG00000000355) #21	ERF (ENSCHYG00000000404) #22	GSK3A (ENSCHYG00000000417) #23	ZNF526 (ENSCHYG00000000435)	DEDD2 (ENSCHYG00000000451) #24	ENSCHYG00000000500 #25	ZNF574 (ENSCHYG00000000579) #26	GRIK5 (ENSCHYG00000000596) #27	ATP1A3 (ENSCHYG00000000627) #28	ENSCHYG00000000702 #29	ERFL (ENSCHYG00000000737) #30	ARHGEF1 (ENSCHYG00000000815) #31	CD79A (ENSCHYG00000001084) #32	ENSCHYG00000001110 ##33	DMRTC2 (ENSCHYG00000001132) #34	LYPD4 (ENSCHYG00000001152) #35	ENSCHYG00000001179 #7
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Siberian musk deer	MODERN SPECIES	124	B9D2 (ENSMMSG00000020537)	TMEM91 (ENSMMSG00000020489)	EXOSC5 (ENSMMSG00000020437)	BCKDHA (ENSMMSG00000020382)	B3GNT8 (ENSMMSG00000020371)	DMAC2 (ENSMMSG00000020294)	ERICH4 (ENSMMSG00000020233)	ENSMMSG00000020209 #7	LIPE (ENSMMSG00000020179) #14	CNFN (ENSMMSG00000020148) #15	ENSMMSG00000020131 #16	TMEM145 (ENSMMSG00000020115) #17	PRR19 (ENSMMSG00000020102) #19	PAFAH1B3 (ENSMMSG00000020080) #20	CIC (ENSMMSG00000020009) #21	ERF (ENSMMSG00000019974) #22	GSK3A (ENSMMSG00000019904) #23	ZNF526 (ENSMMSG00000019889)	DEDD2 (ENSMMSG00000019867) #24	POU2F2 (ENSMMSG00000018771) #25	ZNF574 (ENSMMSG00000018699) #26	GRIK5 (ENSMMSG00000018615) #27	ATP1A3 (ENSMMSG00000018343) #28	RABAC1 (ENSMMSG00000018284) #29	ERFL (ENSMMSG00000018244) #30	ARHGEF1 (ENSMMSG00000017749) #31	CD79A (ENSMMSG00000017672) #32	RPS19 (ENSMMSG00000017625) ##33	DMRTC2 (ENSMMSG00000017583) #34	LYPD4 (ENSMMSG00000017557) #35	ENSMMSG00000016434 #7
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.a.a.a #7
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000157162.c.b.j	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Rambouillet Sheep	MODERN SPECIES	5	B9D2 (ENSOARG00020017895)	TMEM91 (ENSOARG00020017943)	EXOSC5 (ENSOARG00020018062)	BCKDHA (ENSOARG00020018183)	B3GNT8 (ENSOARG00020018420)	DMAC2 (ENSOARG00020018442)	ENSOARG00020018539	ENSOARG00020019378 #7	LIPE (ENSOARG00020019526) #14	CNFN (ENSOARG00020019872) #15	MEGF8 (ENSOARG00020019929) #16	TMEM145 (ENSOARG00020020232) #17	PRR19 (ENSOARG00020020341) #19	PAFAH1B3 (ENSOARG00020020383) #20	CIC (ENSOARG00020020421) #21	ERF (ENSOARG00020020689) #22	GSK3A (ENSOARG00020020722) #23	ZNF526 (ENSOARG00020020823)	DEDD2 (ENSOARG00020020833) #24	POU2F2 (ENSOARG00020020916) #25	ZNF574 (ENSOARG00020021082) #26	GRIK5 (ENSOARG00020021115) #27	ATP1A3 (ENSOARG00020021250) #28	RABAC1 (ENSOARG00020021478) #29	ERFL (ENSOARG00020021537) #30	ARHGEF1 (ENSOARG00020021606) #31	CD79A (ENSOARG00020022164) #32	RPS19 (ENSOARG00020022219) #33	DMRTC2 (ENSOARG00020022282) #34	LYPD4 (ENSOARG00020022339) #35	ENSOARG00020022368 #7
Goat	DUPLICATION
Goat	MODERN SPECIES	9	EXOSC5 (ENSCHIG00000026498)	BCKDHA (ENSCHIG00000025690)	B3GNT8 (ENSCHIG00000011490)	DMAC2 (ENSCHIG00000022889)	CYP2B6 (ENSCHIG00000021270)	ERICH4 (ENSCHIG00000015175)	ENSCHIG00000007384 #7	LIPE (ENSCHIG00000020815) #14	CNFN (ENSCHIG00000014477) #15	MEGF8 (ENSCHIG00000015019) #16	TMEM145 (ENSCHIG00000003376) #17	PRR19 (ENSCHIG00000022284) #19	ENSCHIG00000007871 #18	PAFAH1B3 (ENSCHIG00000019643) #20	CIC (ENSCHIG00000015534) #21	ERF (ENSCHIG00000019624) #22	GSK3A (ENSCHIG00000027180) #23	ZNF526 (ENSCHIG00000018756)	DEDD2 (ENSCHIG00000020747) #24	POU2F2 (ENSCHIG00000025522) #25	ZNF574 (ENSCHIG00000009605) #26	GRIK5 (ENSCHIG00000025382) #27	ATP1A3 (ENSCHIG00000020539) #28	RABAC1 (ENSCHIG00000023419) #29	ENSCHIG00000008355	ENSCHIG00000027270 #22	ARHGEF1 (ENSCHIG00000022244) #31	CD79A (ENSCHIG00000013630) #32	ENSCHIG00000025321 ##33	DMRTC2 (ENSCHIG00000020158) #34	LYPD4 (ENSCHIG00000022395) #35
Goat	MODERN SPECIES	9	TMEM145 (ENSCHIG00000003376) #17	PRR19 (ENSCHIG00000022284) #19	ENSCHIG00000007871 #18	PAFAH1B3 (ENSCHIG00000019643) #20	CIC (ENSCHIG00000015534) #21	ERF (ENSCHIG00000019624) #22	GSK3A (ENSCHIG00000027180) #23	ZNF526 (ENSCHIG00000018756)	DEDD2 (ENSCHIG00000020747) #24	POU2F2 (ENSCHIG00000025522) #25	ZNF574 (ENSCHIG00000009605) #26	GRIK5 (ENSCHIG00000025382) #27	ATP1A3 (ENSCHIG00000020539) #28	RABAC1 (ENSCHIG00000023419) #29	ENSCHIG00000008355	ENSCHIG00000027270 #22	ARHGEF1 (ENSCHIG00000022244) #31	CD79A (ENSCHIG00000013630) #32	ENSCHIG00000025321 ##33	DMRTC2 (ENSCHIG00000020158) #34	LYPD4 (ENSCHIG00000022395) #35	ENSCHIG00000006753 #7	ENSCHIG00000015831 #7	ENSCHIG00000012997 #7	ENSCHIG00000021407 #7	ENSCHIG00000023941 #13	CD177 (ENSCHIG00000018582) ##35	TEX101 (ENSCHIG00000003537) ##35	ENSCHIG00000025874	ENSCHIG00000018879	ENSCHIG00000011653
Bovinae	ANCESTRAL SPECIES	3	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
American bison	MODERN SPECIES	1667																ERF (ENSBBBG00000001148) #22	GSK3A (ENSBBBG00000001091) #23
Bos	ANCESTRAL SPECIES	4	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Bos_a	ANCESTRAL SPECIES	16	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01010000223350	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Wild yak	MODERN SPECIES	2329											MEGF8 (ENSBMUG00000007653) #16	TMEM145 (ENSBMUG00000007684) #17	PRR19 (ENSBMUG00000007690) #19	PAFAH1B3 (ENSBMUG00000007703) #20	CIC (ENSBMUG00000007723) #21	ERF (ENSBMUG00000007734) #22	GSK3A (ENSBMUG00000007760) #23	ZNF526 (ENSBMUG00000007775)	DEDD2 (ENSBMUG00000007781) #24	POU2F2 (ENSBMUG00000007839) #25	ZNF574 (ENSBMUG00000007896) #26	GRIK5 (ENSBMUG00000007983) #27	ATP1A3 (ENSBMUG00000008087) #28	RABAC1 (ENSBMUG00000008116) #29	ERFL (ENSBMUG00000008138) #30	ARHGEF1 (ENSBMUG00000008227) #31	CD79A (ENSBMUG00000008237) #32	RPS19 (ENSBMUG00000008261) ##33	DMRTC2 (ENSBMUG00000008273) #34	LYPD4 (ENSBMUG00000008287) #35	ENSBMUG00000008411 #7
Domestic yak	MODERN SPECIES	12	EXOSC5 (ENSBGRG00000019201)	ENSBGRG00000019164	BCKDHA (ENSBGRG00000019059)	B3GNT8 (ENSBGRG00000019050)	DMAC2 (ENSBGRG00000018867)	ERICH4 (ENSBGRG00000018840)	ENSBGRG00000018623	ENSBGRG00000018545 #7	LIPE (ENSBGRG00000018426) #14	CNFN (ENSBGRG00000018386) #15	ENSBGRG00000018363 #16	TMEM145 (ENSBGRG00000018156) #17	PRR19 (ENSBGRG00000018108) #19	PAFAH1B3 (ENSBGRG00000018054) #20	CIC (ENSBGRG00000017444) #21	ENSBGRG00000017376 #22	GSK3A (ENSBGRG00000017191) #23	ZNF526 (ENSBGRG00000017155)	DEDD2 (ENSBGRG00000017057) #24	ENSBGRG00000017018 #25	ENSBGRG00000016760 #25	ZNF574 (ENSBGRG00000016716) #26	GRIK5 (ENSBGRG00000016203) #27	ATP1A3 (ENSBGRG00000015768) #28	RABAC1 (ENSBGRG00000015658) #29	ERFL (ENSBGRG00000015596) #30	ARHGEF1 (ENSBGRG00000014764) #31	CD79A (ENSBGRG00000014607) #32	ENSBGRG00000014536 ##33	DMRTC2 (ENSBGRG00000014389) #34	LYPD4 (ENSBGRG00000014288) #35
Bos_b	ANCESTRAL SPECIES		ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a #7	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.h.a.b.b #7
Hybrid Bos Indicus	MODERN SPECIES	9	B3GNT8 (ENSBIXG00005017509)	BCKDHA (ENSBIXG00005017645)	DMAC2 (ENSBIXG00005017716)	ERICH4 (ENSBIXG00005017740)	ENSBIXG00005017765	ENSBIXG00005002888	ENSBIXG00005017862 #7	ENSBIXG00005017878	LIPE (ENSBIXG00005017907) #14	CNFN (ENSBIXG00005017936) #15	MEGF8 (ENSBIXG00005002929) #16	TMEM145 (ENSBIXG00005018074) #17	PRR19 (ENSBIXG00005018080) #19	ENSBIXG00005018104 #20	CIC (ENSBIXG00005018122) #21	ERF (ENSBIXG00005018139) #22	GSK3A (ENSBIXG00005018197) #23	ZNF526 (ENSBIXG00005018214)	DEDD2 (ENSBIXG00005018238) #24	POU2F2 (ENSBIXG00005018313) #25	ZNF574 (ENSBIXG00005018351) #26	GRIK5 (ENSBIXG00005018372) #27	ATP1A3 (ENSBIXG00005018430) #28	RABAC1 (ENSBIXG00005006141) #29	ERFL (ENSBIXG00005018479) #30	ARHGEF1 (ENSBIXG00005018710) #31	CD79A (ENSBIXG00005018747) #32	ENSBIXG00005018880 ##33	DMRTC2 (ENSBIXG00005003077) #34	LYPD4 (ENSBIXG00005000055) #35	ENSBIXG00005019421 #7
Cow	DUPLICATION
Cow	MODERN SPECIES	9	EXOSC5 (ENSBTAG00000016034)	BCKDHA (ENSBTAG00000016037)	B3GNT8 (ENSBTAG00000016041)	DMAC2 (ENSBTAG00000009449)	ERICH4 (ENSBTAG00000047423)	ENSBTAG00000050227	CEACAM1 (ENSBTAG00000005615) #7	ENSBTAG00000052955	LIPE (ENSBTAG00000038321) #14	CNFN (ENSBTAG00000031004) #15	MEGF8 (ENSBTAG00000031001) #16	TMEM145 (ENSBTAG00000039015) #17	PRR19 (ENSBTAG00000013283) #19	PAFAH1B3 (ENSBTAG00000019787) #20	CIC (ENSBTAG00000019785) #21	ERF (ENSBTAG00000000332) #22	GSK3A (ENSBTAG00000020756) #23	ZNF526 (ENSBTAG00000020754)	DEDD2 (ENSBTAG00000005761) #24	POU2F2 (ENSBTAG00000008556) #25	ZNF574 (ENSBTAG00000021789) #26	ENSBTAG00000054584 #27	GRIK5 (ENSBTAG00000011723) #27	ATP1A3 (ENSBTAG00000018635) #28	RABAC1 (ENSBTAG00000018633) #29	ENSBTAG00000053222 #22	ARHGEF1 (ENSBTAG00000018912) #31	CD79A (ENSBTAG00000001882) #32	RPS19 (ENSBTAG00000011963) ##33	DMRTC2 (ENSBTAG00000019273) #34	LYPD4 (ENSBTAG00000020251) #35
Cow	MODERN SPECIES	9	MEGF8 (ENSBTAG00000031001) #16	TMEM145 (ENSBTAG00000039015) #17	PRR19 (ENSBTAG00000013283) #19	PAFAH1B3 (ENSBTAG00000019787) #20	CIC (ENSBTAG00000019785) #21	ERF (ENSBTAG00000000332) #22	GSK3A (ENSBTAG00000020756) #23	ZNF526 (ENSBTAG00000020754)	DEDD2 (ENSBTAG00000005761) #24	POU2F2 (ENSBTAG00000008556) #25	ZNF574 (ENSBTAG00000021789) #26	ENSBTAG00000054584 #27	GRIK5 (ENSBTAG00000011723) #27	ATP1A3 (ENSBTAG00000018635) #28	RABAC1 (ENSBTAG00000018633) #29	ENSBTAG00000053222 #22	ARHGEF1 (ENSBTAG00000018912) #31	CD79A (ENSBTAG00000001882) #32	RPS19 (ENSBTAG00000011963) ##33	DMRTC2 (ENSBTAG00000019273) #34	LYPD4 (ENSBTAG00000020251) #35	ENSBTAG00000006859 #7	ENSBTAG00000049346 #7	ENSBTAG00000052343	ENSBTAG00000054156 ##7	CXCL17 (ENSBTAG00000018652) #13	CD177 (ENSBTAG00000002976) ##35	TEX101 (ENSBTAG00000016777) ##35	BSP3 (ENSBTAG00000003886)	BSP5 (ENSBTAG00000018882)	ENSBTAG00000049614
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00390000002861 #13
Blue whale	MODERN SPECIES	10	EXOSC5 (ENSBMSG00010017251)	BCKDHA (ENSBMSG00010017121)	B3GNT8 (ENSBMSG00010017104)	DMAC2 (ENSBMSG00010016906)	ERICH4 (ENSBMSG00010016823)	ENSBMSG00010016795	ENSBMSG00010016729 #7	ENSBMSG00010016682	LIPE (ENSBMSG00010016630) #14	CNFN (ENSBMSG00010016586) #15	ENSBMSG00010016564 #16	TMEM145 (ENSBMSG00010016521) #17	PRR19 (ENSBMSG00010016489) #19	PAFAH1B3 (ENSBMSG00010016458) #20	CIC (ENSBMSG00010016308) #21	ERF (ENSBMSG00010016255) #22	GSK3A (ENSBMSG00010016150) #23	ZNF526 (ENSBMSG00010016129)	DEDD2 (ENSBMSG00010016093) #24	POU2F2 (ENSBMSG00010014278) #25	ZNF574 (ENSBMSG00010014041) #26	GRIK5 (ENSBMSG00010020158) #27	ATP1A3 (ENSBMSG00010020043) #28	RABAC1 (ENSBMSG00010020001) #29	ERFL (ENSBMSG00010019977) #30	ARHGEF1 (ENSBMSG00010019827) #31	CD79A (ENSBMSG00010019729) #32	ENSBMSG00010019694 ##33	DMRTC2 (ENSBMSG00010019663) #34	LYPD4 (ENSBMSG00010019644) #35	ENSBMSG00010019623
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00390000002861 #13
Sperm whale	MODERN SPECIES	8	AXL (ENSPCTG00005006693)	ENSPCTG00005006668	ENSPCTG00005006654	B3GNT8 (ENSPCTG00005006644)	BCKDHA (ENSPCTG00005006616)	ENSPCTG00005006591 #7	ENSPCTG00005006569 #7	ENSPCTG00005006540	LIPE (ENSPCTG00005006526) #14	ENSPCTG00005006495 #15	ENSPCTG00005006481 #16	TMEM145 (ENSPCTG00005006442) #17	PRR19 (ENSPCTG00005006423) #19	PAFAH1B3 (ENSPCTG00005006406) #20	CIC (ENSPCTG00005006286) #21	ERF (ENSPCTG00005006251) #22	GSK3A (ENSPCTG00005006203) #23	ZNF526 (ENSPCTG00005006185)	DEDD2 (ENSPCTG00005006152) #24	POU2F2 (ENSPCTG00005005510) #25	ERFL (ENSPCTG00005005455) #30	ARHGEF1 (ENSPCTG00005005237) #31	CD79A (ENSPCTG00005005160) #32	ENSPCTG00005005137 ##33	DMRTC2 (ENSPCTG00005005088) #34	LYPD4 (ENSPCTG00005005055) #35	CXCL17 (ENSPCTG00005005031) #13	ENSPCTG00005005018 ##35	ENSPCTG00005004989 ##35	TEX101 (ENSPCTG00005004954) ##35	ENSPCTG00005004915
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00940000171483	ENSGT00990000204044	ENSGT00530000063351.a.a ##35	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.b ##35
Dolphin	MODERN SPECIES	2278																ERF (ENSTTRG00000008340) #22	GSK3A (ENSTTRG00000008338) #23	ZNF526 (ENSTTRG00000008336)	DEDD2 (ENSTTRG00000008333) #24	POU2F2 (ENSTTRG00000008331) #25	ZNF574 (ENSTTRG00000008326) #26	GRIK5 (ENSTTRG00000008314) #27	ATP1A3 (ENSTTRG00000008308) #28	RABAC1 (ENSTTRG00000008302) #29	ARHGEF1 (ENSTTRG00000008288) #31	CD79A (ENSTTRG00000008284) #32	RPS19 (ENSTTRG00000008278) ##33	DMRTC2 (ENSTTRG00000008270) #34	LYPD4 (ENSTTRG00000008264) #35
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00390000002861 #13
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b #7	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f.r ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00390000002861 #13
Narwhal	MODERN SPECIES	296	EXOSC5 (ENSMMNG00015003426)	BCKDHA (ENSMMNG00015003452)	B3GNT8 (ENSMMNG00015003478)	DMAC2 (ENSMMNG00015003502)	ERICH4 (ENSMMNG00015003517)	ENSMMNG00015003530 #7	ENSMMNG00015003542	LIPE (ENSMMNG00015003560) #14	ENSMMNG00015003571	CNFN (ENSMMNG00015003587) #15	MEGF8 (ENSMMNG00015003617) #16	TMEM145 (ENSMMNG00015003703) #17	PRR19 (ENSMMNG00015003832) #19	PAFAH1B3 (ENSMMNG00015003845) #20	CIC (ENSMMNG00015003888) #21	ERF (ENSMMNG00015003962) #22	GSK3A (ENSMMNG00015003974) #23	ZNF526 (ENSMMNG00015003997)	DEDD2 (ENSMMNG00015004007) #24	ENSMMNG00015004017	POU2F2 (ENSMMNG00015004037) #25	ZNF574 (ENSMMNG00015004072) #26	GRIK5 (ENSMMNG00015004091) #27	ATP1A3 (ENSMMNG00015004136) #28	RABAC1 (ENSMMNG00015004198) #29	ERFL (ENSMMNG00015004212) #30	ARHGEF1 (ENSMMNG00015004283) #31	CD79A (ENSMMNG00015004388) #32	ENSMMNG00015004405 ##33	DMRTC2 (ENSMMNG00015004432) #34	LYPD4 (ENSMMNG00015004446) #35
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	14	B9D2 (ENSDLEG00000004248)	EXOSC5 (ENSDLEG00000004244)	BCKDHA (ENSDLEG00000004236)	B3GNT8 (ENSDLEG00000004233)	DMAC2 (ENSDLEG00000004229)	ERICH4 (ENSDLEG00000004226)	ENSDLEG00000004222 #7	ENSDLEG00000004219	LIPE (ENSDLEG00000002330) #14	CNFN (ENSDLEG00000002318) #15	MEGF8 (ENSDLEG00000002276) #16	TMEM145 (ENSDLEG00000002254) #17	PRR19 (ENSDLEG00000002248) #19	PAFAH1B3 (ENSDLEG00000002240) #20	CIC (ENSDLEG00000002223) #21	ERF (ENSDLEG00000002213) #22	GSK3A (ENSDLEG00000002202) #23	ZNF526 (ENSDLEG00000002191)	DEDD2 (ENSDLEG00000002184) #24	ENSDLEG00000002177	POU2F2 (ENSDLEG00000002157) #25	ZNF574 (ENSDLEG00000002144) #26	GRIK5 (ENSDLEG00000002123) #27	ATP1A3 (ENSDLEG00000002099) #28	RABAC1 (ENSDLEG00000002078) #29	ENSDLEG00000002063 #22	ARHGEF1 (ENSDLEG00000002004) #31	CD79A (ENSDLEG00000001982) #32	RPS19 (ENSDLEG00000001955) ##33	DMRTC2 (ENSDLEG00000001939) #34	LYPD4 (ENSDLEG00000001925) #35
Beluga whale	MODERN SPECIES	14	MEGF8 (ENSDLEG00000002276) #16	TMEM145 (ENSDLEG00000002254) #17	PRR19 (ENSDLEG00000002248) #19	PAFAH1B3 (ENSDLEG00000002240) #20	CIC (ENSDLEG00000002223) #21	ERF (ENSDLEG00000002213) #22	GSK3A (ENSDLEG00000002202) #23	ZNF526 (ENSDLEG00000002191)	DEDD2 (ENSDLEG00000002184) #24	ENSDLEG00000002177	POU2F2 (ENSDLEG00000002157) #25	ZNF574 (ENSDLEG00000002144) #26	GRIK5 (ENSDLEG00000002123) #27	ATP1A3 (ENSDLEG00000002099) #28	RABAC1 (ENSDLEG00000002078) #29	ENSDLEG00000002063 #22	ARHGEF1 (ENSDLEG00000002004) #31	CD79A (ENSDLEG00000001982) #32	RPS19 (ENSDLEG00000001955) ##33	DMRTC2 (ENSDLEG00000001939) #34	LYPD4 (ENSDLEG00000001925) #35	CD177 (ENSDLEG00000001902) ##35	TEX101 (ENSDLEG00000001894) ##35	LYPD3 (ENSDLEG00000001887)	PHLDB3 (ENSDLEG00000001864)	ETHE1 (ENSDLEG00000001847)	ZNF575 (ENSDLEG00000001841)	XRCC1 (ENSDLEG00000001821)	ENSDLEG00000001807	IRGQ (ENSDLEG00000001800)	ZNF576 (ENSDLEG00000001790)
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	10	TMEM91 (ENSPSNG00000017581)	EXOSC5 (ENSPSNG00000017550)	BCKDHA (ENSPSNG00000017396)	ENSPSNG00000017313	ERICH4 (ENSPSNG00000017237)	ENSPSNG00000017162 #7	ENSPSNG00000017125	ENSPSNG00000017088	ENSPSNG00000017051	LIPE (ENSPSNG00000017024) #14	CNFN (ENSPSNG00000016978) #15	ENSPSNG00000016933 #16	TMEM145 (ENSPSNG00000016852) #17	PAFAH1B3 (ENSPSNG00000016663) #20	CIC (ENSPSNG00000016537) #21	ERF (ENSPSNG00000016478) #22	GSK3A (ENSPSNG00000016329) #23	ZNF526 (ENSPSNG00000016306)	DEDD2 (ENSPSNG00000016228) #24	ENSPSNG00000016173	POU2F2 (ENSPSNG00000014981) #25	ZNF574 (ENSPSNG00000014863) #26	GRIK5 (ENSPSNG00000014767) #27	ATP1A3 (ENSPSNG00000013902) #28	ENSPSNG00000013664 #22	ARHGEF1 (ENSPSNG00000013433) #31	CD79A (ENSPSNG00000013274) #32	ENSPSNG00000013157 ##33	DMRTC2 (ENSPSNG00000013013) #34	LYPD4 (ENSPSNG00000012952) #35	CXCL17 (ENSPSNG00000012891) #13
Vaquita	MODERN SPECIES	10	LIPE (ENSPSNG00000017024) #14	CNFN (ENSPSNG00000016978) #15	ENSPSNG00000016933 #16	TMEM145 (ENSPSNG00000016852) #17	PAFAH1B3 (ENSPSNG00000016663) #20	CIC (ENSPSNG00000016537) #21	ERF (ENSPSNG00000016478) #22	GSK3A (ENSPSNG00000016329) #23	ZNF526 (ENSPSNG00000016306)	DEDD2 (ENSPSNG00000016228) #24	ENSPSNG00000016173	POU2F2 (ENSPSNG00000014981) #25	ZNF574 (ENSPSNG00000014863) #26	GRIK5 (ENSPSNG00000014767) #27	ATP1A3 (ENSPSNG00000013902) #28	ENSPSNG00000013664 #22	ARHGEF1 (ENSPSNG00000013433) #31	CD79A (ENSPSNG00000013274) #32	ENSPSNG00000013157 ##33	DMRTC2 (ENSPSNG00000013013) #34	LYPD4 (ENSPSNG00000012952) #35	CXCL17 (ENSPSNG00000012891) #13	CD177 (ENSPSNG00000013918) ##35	TEX101 (ENSPSNG00000013688) ##35	LYPD3 (ENSPSNG00000013639)	PHLDB3 (ENSPSNG00000013304)	ETHE1 (ENSPSNG00000013230)	ZNF575 (ENSPSNG00000013183)	XRCC1 (ENSPSNG00000012900)	ENSPSNG00000012788	IRGQ (ENSPSNG00000012740)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.b.a #7	ENSGT01030000237327	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.b.b.b #7
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.b.b.a #7
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.b.a.b.a.a #7	ENSGT01100000263479.D.a.b.a.b.a.b.a #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.b #7
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.b.a #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.b #7
Ursidae	ANCESTRAL SPECIES	30							ENSGT01100000263479.D.a.b.a.b.b.a.a.a.b #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549.d #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.b.b.b.b #7
Giant Panda	MODERN SPECIES	3	ZNF233 (ENSAMEG00000006122)	ENSAMEG00000006129	ENSAMEG00000026533	ENSAMEG00000027844	ENSAMEG00000006137	ENSAMEG00000006141	ENSAMEG00000026212 #7	ENSAMEG00000005003 #13	LIPE (ENSAMEG00000004975) #14	CNFN (ENSAMEG00000004972) #15	MEGF8 (ENSAMEG00000028618) #16	TMEM145 (ENSAMEG00000004959) #17	PRR19 (ENSAMEG00000004957) #19	PAFAH1B3 (ENSAMEG00000031198) #20	CIC (ENSAMEG00000029555) #21	ERF (ENSAMEG00000004880) #22	GSK3A (ENSAMEG00000026734) #23	ZNF526 (ENSAMEG00000025331)	DEDD2 (ENSAMEG00000026014) #24	POU2F2 (ENSAMEG00000004811) #25	ZNF574 (ENSAMEG00000020255) #26	GRIK5 (ENSAMEG00000004677) #27	ATP1A3 (ENSAMEG00000004573) #28	RABAC1 (ENSAMEG00000029836) #29	ERFL (ENSAMEG00000004554) #30	ARHGEF1 (ENSAMEG00000004495) #31	CD79A (ENSAMEG00000004479) #32	RPS19 (ENSAMEG00000004456) ##33	DMRTC2 (ENSAMEG00000004439) #34	ENSAMEG00000004433 #35	ENSAMEG00000005005 #7
Ursus	ANCESTRAL SPECIES	176							ENSGT01100000263479.D.a.b.a.b.b.a.a.a.b #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549.d #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.b.b.b.b #7	ENSGT01100000263479.D.a.b.a.b.a.b.a #7
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1978																ERF (ENSUAMG00000012226) #22	GSK3A (ENSUAMG00000011821) #23	ZNF526 (ENSUAMG00000011794)	DEDD2 (ENSUAMG00000011790) #24	POU2F2 (ENSUAMG00000011600) #25
American black bear	MODERN SPECIES	4530																ENSUAMG00000005697 #22	ARHGEF1 (ENSUAMG00000005726) #31	CD79A (ENSUAMG00000007114) #32	ENSUAMG00000007118 #33	DMRTC2 (ENSUAMG00000007122) #34	LYPD4 (ENSUAMG00000007126) #35	ENSUAMG00000007138 #7	ENSUAMG00000007189 #7
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	344									ENSUMAG00000001896 #7	ENSUMAG00000001923	CXCL17 (ENSUMAG00000001950) #13	LIPE (ENSUMAG00000001964) #14	PRR19 (ENSUMAG00000002248) #19	PAFAH1B3 (ENSUMAG00000002255) #20	CIC (ENSUMAG00000002268) #21	ENSUMAG00000002396 #22	GSK3A (ENSUMAG00000002409) #23	DEDD2 (ENSUMAG00000002619) #24	POU2F2 (ENSUMAG00000002647) #25	ZNF574 (ENSUMAG00000002662) #26	GRIK5 (ENSUMAG00000002670) #27	ENSUMAG00000002742 #28	ENSUMAG00000002749 #29	ENSUMAG00000002753 #22	ARHGEF1 (ENSUMAG00000002856) #31	CD79A (ENSUMAG00000003839) #32	RPS19 (ENSUMAG00000003843) #33	DMRTC2 (ENSUMAG00000003849) #34	LYPD4 (ENSUMAG00000003866) #35	ENSUMAG00000003880 #7	ENSUMAG00000003897 #7
Polar bear	MODERN SPECIES	344	ENSUMAG00000001896 #7	ENSUMAG00000001923	CXCL17 (ENSUMAG00000001950) #13	LIPE (ENSUMAG00000001964) #14	PRR19 (ENSUMAG00000002248) #19	PAFAH1B3 (ENSUMAG00000002255) #20	CIC (ENSUMAG00000002268) #21	ENSUMAG00000002396 #22	GSK3A (ENSUMAG00000002409) #23	DEDD2 (ENSUMAG00000002619) #24	POU2F2 (ENSUMAG00000002647) #25	ZNF574 (ENSUMAG00000002662) #26	GRIK5 (ENSUMAG00000002670) #27	ENSUMAG00000002742 #28	ENSUMAG00000002749 #29	ENSUMAG00000002753 #22	ARHGEF1 (ENSUMAG00000002856) #31	CD79A (ENSUMAG00000003839) #32	RPS19 (ENSUMAG00000003843) #33	DMRTC2 (ENSUMAG00000003849) #34	LYPD4 (ENSUMAG00000003866) #35	ENSUMAG00000003880 #7	ENSUMAG00000003897 #7	ENSUMAG00000003921 ##7
Mustelinae	ANCESTRAL SPECIES	7											ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.b.c #7
American mink	MODERN SPECIES	385											ENSNVIG00000024583 #16	TMEM145 (ENSNVIG00000024588) #17	PRR19 (ENSNVIG00000024589) #19	ENSNVIG00000024590 #20	CIC (ENSNVIG00000024591) #21	ERF (ENSNVIG00000024592) #22	GSK3A (ENSNVIG00000024594) #23	ZNF526 (ENSNVIG00000024596)	DEDD2 (ENSNVIG00000024597) #24	POU2F2 (ENSNVIG00000024599) #25	ZNF574 (ENSNVIG00000024603) #26	GRIK5 (ENSNVIG00000024604) #27	ATP1A3 (ENSNVIG00000024605) #28	RABAC1 (ENSNVIG00000024607) #29	ERFL (ENSNVIG00000024608) #30	ARHGEF1 (ENSNVIG00000024617) #31	CD79A (ENSNVIG00000024643) #32	RPS19 (ENSNVIG00000024644) ##33	DMRTC2 (ENSNVIG00000024645) #34	LYPD4 (ENSNVIG00000024646) #35	ENSNVIG00000024647 #7
Ferret	MODERN SPECIES	291											MEGF8 (ENSMPUG00000007646) #16	TMEM145 (ENSMPUG00000007588) #17	PRR19 (ENSMPUG00000007582) #19	PAFAH1B3 (ENSMPUG00000007574) #20	CIC (ENSMPUG00000007557) #21	ERF (ENSMPUG00000007551) #22	GSK3A (ENSMPUG00000007543) #23	ZNF526 (ENSMPUG00000019384)	DEDD2 (ENSMPUG00000007534) #24	POU2F2 (ENSMPUG00000007374) #25	ENSMPUG00000019382	ZNF574 (ENSMPUG00000007369) #26	GRIK5 (ENSMPUG00000007345) #27	ATP1A3 (ENSMPUG00000007324) #28	RABAC1 (ENSMPUG00000007273) #29	ERFL (ENSMPUG00000007268) #30	ARHGEF1 (ENSMPUG00000007235) #31	CD79A (ENSMPUG00000007182) #32	RPS19 (ENSMPUG00000007164) ##33	DMRTC2 (ENSMPUG00000007147) #34	LYPD4 (ENSMPUG00000007126) #35
Canidae	ANCESTRAL SPECIES	5	ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.a #7	ENSGT01100000263479.D.a.b.a.b.a.b.a.a #7	ENSGT01100000263479.D.a.b.a.b.a.b.b.a.b #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.o #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.b #7
Red fox	DUPLICATION
Red fox	MODERN SPECIES	101	ENSVVUG00000009071 #7	ENSVVUG00000009078 #7	ENSVVUG00000009089 #7	ENSVVUG00000009099	ENSVVUG00000009101 #7	ENSVVUG00000009105	ENSVVUG00000009110 #7	ENSVVUG00000009145	ENSVVUG00000009150	LIPE (ENSVVUG00000009152) #14	CNFN (ENSVVUG00000009163) #15	MEGF8 (ENSVVUG00000009173) #16	TMEM145 (ENSVVUG00000009304) #17	PAFAH1B3 (ENSVVUG00000009493) #20	CIC (ENSVVUG00000009518) #21	ERF (ENSVVUG00000009590) #22	GSK3A (ENSVVUG00000009613) #23	ZNF526 (ENSVVUG00000009982)	DEDD2 (ENSVVUG00000009984) #24	POU2F2 (ENSVVUG00000010002) #25	ZNF574 (ENSVVUG00000010354) #26	GRIK5 (ENSVVUG00000010369) #27	ATP1A3 (ENSVVUG00000010594) #28	RABAC1 (ENSVVUG00000010606) #29	ENSVVUG00000010610 #22	ARHGEF1 (ENSVVUG00000010615) #31	CD79A (ENSVVUG00000010632) #32	RPS19 (ENSVVUG00000010652) #33	DMRTC2 (ENSVVUG00000010656) #34	LYPD4 (ENSVVUG00000010671) #35	ENSVVUG00000010707 #7
Red fox	MODERN SPECIES	101	LIPE (ENSVVUG00000009152) #14	CNFN (ENSVVUG00000009163) #15	MEGF8 (ENSVVUG00000009173) #16	TMEM145 (ENSVVUG00000009304) #17	PAFAH1B3 (ENSVVUG00000009493) #20	CIC (ENSVVUG00000009518) #21	ERF (ENSVVUG00000009590) #22	GSK3A (ENSVVUG00000009613) #23	ZNF526 (ENSVVUG00000009982)	DEDD2 (ENSVVUG00000009984) #24	POU2F2 (ENSVVUG00000010002) #25	ZNF574 (ENSVVUG00000010354) #26	GRIK5 (ENSVVUG00000010369) #27	ATP1A3 (ENSVVUG00000010594) #28	RABAC1 (ENSVVUG00000010606) #29	ENSVVUG00000010610 #22	ARHGEF1 (ENSVVUG00000010615) #31	CD79A (ENSVVUG00000010632) #32	RPS19 (ENSVVUG00000010652) #33	DMRTC2 (ENSVVUG00000010656) #34	LYPD4 (ENSVVUG00000010671) #35	ENSVVUG00000010707 #7	ENSVVUG00000010980 #7
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000153599.B.a	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.a #7	ENSGT01100000263479.D.a.b.a.b.a.b.a.a #7	ENSGT01100000263479.D.a.b.a.b.a.b.b.a.b #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.o #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.a ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.b #7
Dog	MODERN SPECIES		ZNF575 (ENSCAFG00845000167)	PHLDB3 (ENSCAFG00845000239)	LYPD3 (ENSCAFG00845000436)	TEX101 (ENSCAFG00845000460) ##35	ENSCAFG00845000474 ##35	CEACAM1 (ENSCAFG00845000573) #7	ENSCAFG00845000701 #13	ENSCAFG00845000713	LIPE (ENSCAFG00845000721) #14	CNFN (ENSCAFG00845000749) #15	ENSCAFG00845000769 #16	PAFAH1B3 (ENSCAFG00845000778) #20	TMEM145 (ENSCAFG00845000809) #17	PRR19 (ENSCAFG00845000828) #19	CIC (ENSCAFG00845000846) #21	ERF (ENSCAFG00845000876) #22	GSK3A (ENSCAFG00845000891) #23	ZNF526 (ENSCAFG00845000921)	DEDD2 (ENSCAFG00845000934) #24	POU2F2 (ENSCAFG00845000999) #25	ZNF574 (ENSCAFG00845001108) #26	GRIK5 (ENSCAFG00845001140) #27	ATP1A3 (ENSCAFG00845001235) #28	RABAC1 (ENSCAFG00845001408) #29	ERFL (ENSCAFG00845001434) #30	ARHGEF1 (ENSCAFG00845001568) #31	CD79A (ENSCAFG00845001724) #32	RPS19 (ENSCAFG00845001758) ##33	DMRTC2 (ENSCAFG00845001796) #34	LYPD4 (ENSCAFG00845001833) #35	ENSCAFG00845002010 #7
Dingo	DUPLICATION
Dingo	MODERN SPECIES	125	TEX101 (ENSCAFG00020014049) ##35	CD177 (ENSCAFG00020014056) ##35	ENSCAFG00020014071 #7	ENSCAFG00020014074 #7	ENSCAFG00020014079 #7	ENSCAFG00020014081 #7	ENSCAFG00020014093 #7	ENSCAFG00020014150 #13	LIPE (ENSCAFG00020014155) #14	CNFN (ENSCAFG00020014171) #15	MEGF8 (ENSCAFG00020014183) #16	TMEM145 (ENSCAFG00020014279) #17	PRR19 (ENSCAFG00020014335) #19	ENSCAFG00020014336 #20	CIC (ENSCAFG00020014340) #21	ERF (ENSCAFG00020014347) #22	GSK3A (ENSCAFG00020014351) #23	ZNF526 (ENSCAFG00020014510)	DEDD2 (ENSCAFG00020014511) #24	POU2F2 (ENSCAFG00020014519) #25	ZNF574 (ENSCAFG00020014558) #26	GRIK5 (ENSCAFG00020014562) #27	ATP1A3 (ENSCAFG00020014636) #28	RABAC1 (ENSCAFG00020014693) #29	ENSCAFG00020014701 #22	ARHGEF1 (ENSCAFG00020014703) #31	CD79A (ENSCAFG00020014709) #32	ENSCAFG00020014712 ##33	DMRTC2 (ENSCAFG00020014713) #34	LYPD4 (ENSCAFG00020014716) #35	ENSCAFG00020014727 #7
Dingo	MODERN SPECIES	125	CNFN (ENSCAFG00020014171) #15	MEGF8 (ENSCAFG00020014183) #16	TMEM145 (ENSCAFG00020014279) #17	PRR19 (ENSCAFG00020014335) #19	ENSCAFG00020014336 #20	CIC (ENSCAFG00020014340) #21	ERF (ENSCAFG00020014347) #22	GSK3A (ENSCAFG00020014351) #23	ZNF526 (ENSCAFG00020014510)	DEDD2 (ENSCAFG00020014511) #24	POU2F2 (ENSCAFG00020014519) #25	ZNF574 (ENSCAFG00020014558) #26	GRIK5 (ENSCAFG00020014562) #27	ATP1A3 (ENSCAFG00020014636) #28	RABAC1 (ENSCAFG00020014693) #29	ENSCAFG00020014701 #22	ARHGEF1 (ENSCAFG00020014703) #31	CD79A (ENSCAFG00020014709) #32	ENSCAFG00020014712 ##33	DMRTC2 (ENSCAFG00020014713) #34	LYPD4 (ENSCAFG00020014716) #35	ENSCAFG00020014727 #7	ERICH4 (ENSCAFG00020014765)	DMAC2 (ENSCAFG00020014766)	B3GNT8 (ENSCAFG00020014767)	BCKDHA (ENSCAFG00020014768)	EXOSC5 (ENSCAFG00020014770)	B9D2 (ENSCAFG00020014774)	TGFB1 (ENSCAFG00020014777)	CCDC97 (ENSCAFG00020014778)	HNRNPUL1 (ENSCAFG00020014782)
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.n #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.c #7
Cat	MODERN SPECIES	246	EXOSC5 (ENSFCAG00000033818)	BCKDHA (ENSFCAG00000005438)	B3GNT8 (ENSFCAG00000005440)	DMAC2 (ENSFCAG00000002361)	ERICH4 (ENSFCAG00000009918)	ENSFCAG00000003035 #7	CXCL17 (ENSFCAG00000040968) #13	ENSFCAG00000053328	LIPE (ENSFCAG00000022678) #14	CNFN (ENSFCAG00000012749) #15	MEGF8 (ENSFCAG00000012745) #16	TMEM145 (ENSFCAG00000012742) #17	PRR19 (ENSFCAG00000012741) #19	PAFAH1B3 (ENSFCAG00000003598) #20	CIC (ENSFCAG00000012737) #21	ERF (ENSFCAG00000030101) #22	GSK3A (ENSFCAG00000030846) #23	ZNF526 (ENSFCAG00000022743)	DEDD2 (ENSFCAG00000012732) #24	POU2F2 (ENSFCAG00000012731) #25	ZNF574 (ENSFCAG00000022250) #26	GRIK5 (ENSFCAG00000012730) #27	ATP1A3 (ENSFCAG00000012729) #28	RABAC1 (ENSFCAG00000024180) #29	ERFL (ENSFCAG00000035386) #30	ARHGEF1 (ENSFCAG00000008128) #31	CD79A (ENSFCAG00000008129) #32	DMRTC2 (ENSFCAG00000008126) #34	LYPD4 (ENSFCAG00000004845) #35	ENSFCAG00000042962 #7	CD177 (ENSFCAG00000039801) ##35
Panthera	ANCESTRAL SPECIES	20	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.n #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a.b.c #7
Tiger	MODERN SPECIES	246	B9D2 (ENSPTIG00000014481)	TMEM91 (ENSPTIG00000014938)	EXOSC5 (ENSPTIG00000015884)	BCKDHA (ENSPTIG00000017890)	DMAC2 (ENSPTIG00000019804)	ERICH4 (ENSPTIG00000006672)	ENSPTIG00000007025 #7	CXCL17 (ENSPTIG00000008290) #13	LIPE (ENSPTIG00000008874) #14	ENSPTIG00000011269	MEGF8 (ENSPTIG00000011829) #16	TMEM145 (ENSPTIG00000018901) #17	PRR19 (ENSPTIG00000007221) #19	PAFAH1B3 (ENSPTIG00000008030) #20	CIC (ENSPTIG00000008996) #21	ERF (ENSPTIG00000013584) #22	GSK3A (ENSPTIG00000014636) #23	ZNF526 (ENSPTIG00000016033)	DEDD2 (ENSPTIG00000016247) #24	ZNF574 (ENSPTIG00000006879) #26	GRIK5 (ENSPTIG00000019069) #27	ATP1A3 (ENSPTIG00000004401) #28	ENSPTIG00000014231 #29	ERFL (ENSPTIG00000014623) #30	ARHGEF1 (ENSPTIG00000016034) #31	ENSPTIG00000006521 ##33	DMRTC2 (ENSPTIG00000009674) #34	LYPD4 (ENSPTIG00000011907) #35	ENSPTIG00000012854 #7	ENSPTIG00000015110 #7	CD177 (ENSPTIG00000018687) ##35
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d #7	ENSGT00390000002861 #13	ENSGT00940000171483	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b.n #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT00530000063351.a.a ##35
lion	MODERN SPECIES	15	EXOSC5 (ENSPLOG00000006679)	BCKDHA (ENSPLOG00000006715)	B3GNT8 (ENSPLOG00000006750)	DMAC2 (ENSPLOG00000006789)	ENSPLOG00000006846	ENSPLOG00000006902 #7	CXCL17 (ENSPLOG00000007022) #13	ENSPLOG00000007035	LIPE (ENSPLOG00000007057) #14	CNFN (ENSPLOG00000007085) #15	ENSPLOG00000007105 #16	TMEM145 (ENSPLOG00000007245) #17	PRR19 (ENSPLOG00000007462) #19	PAFAH1B3 (ENSPLOG00000007480) #20	CIC (ENSPLOG00000007521) #21	ERF (ENSPLOG00000007581) #22	GSK3A (ENSPLOG00000007615) #23	ZNF526 (ENSPLOG00000007664)	DEDD2 (ENSPLOG00000007677) #24	POU2F2 (ENSPLOG00000007798) #25	ZNF574 (ENSPLOG00000008426) #26	GRIK5 (ENSPLOG00000008447) #27	ATP1A3 (ENSPLOG00000008601) #28	RABAC1 (ENSPLOG00000009062) #29	ERFL (ENSPLOG00000009162) #30	ARHGEF1 (ENSPLOG00000009304) #31	CD79A (ENSPLOG00000009705) #32	RPS19 (ENSPLOG00000009766) #33	DMRTC2 (ENSPLOG00000009804) #34	LYPD4 (ENSPLOG00000009823) #35	CD177 (ENSPLOG00000009857) ##35
leopard	MODERN SPECIES	165	ENSPPRG00000011743	ENSPPRG00000011744	DMAC2 (ENSPPRG00000003894)	ERICH4 (ENSPPRG00000003928)	ENSPPRG00000004013	ENSPPRG00000004091 #7	CXCL17 (ENSPPRG00000004116) #13	LIPE (ENSPPRG00000004305) #14	CNFN (ENSPPRG00000004339) #15	MEGF8 (ENSPPRG00000004589) #16	TMEM145 (ENSPPRG00000004698) #17	PRR19 (ENSPPRG00000004728) #19	PAFAH1B3 (ENSPPRG00000004745) #20	CIC (ENSPPRG00000004914) #21	GSK3A (ENSPPRG00000005007) #23	ERF (ENSPPRG00000005019) #22	ZNF526 (ENSPPRG00000007308)	DEDD2 (ENSPPRG00000007326) #24	POU2F2 (ENSPPRG00000007803) #25	ZNF574 (ENSPPRG00000011771) #26	GRIK5 (ENSPPRG00000007924) #27	ATP1A3 (ENSPPRG00000008238) #28	RABAC1 (ENSPPRG00000008295) #29	ERFL (ENSPPRG00000008331) #30	ARHGEF1 (ENSPPRG00000008642) #31	CD79A (ENSPPRG00000008704) #32	RPS19 (ENSPPRG00000008756) #33	DMRTC2 (ENSPPRG00000008914) #34	LYPD4 (ENSPPRG00000009032) #35	ENSPPRG00000009499 #7	ENSPPRG00000009734 #7
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00730000111056 #14	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.a.b.a #7
Equus	ANCESTRAL SPECIES	1	ENSGT01100000263479.D.a.b.b.e.a.a.a #7	ENSGT01100000263479.D.a.b.b.e.a.b.a #7	ENSGT00390000002861.f #13	ENSGT01100000263479.D.a.b.b.e.a.b.b #7	ENSGT01030000237327	ENSGT00730000111056 #14	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00910000148701 #18	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.a.b.a.a.a #7
Donkey	MODERN SPECIES	18	ENSEASG00005006309 #7	ENSEASG00005006283 #7	ENSEASG00005038772	ENSEASG00005006278 #13	ENSEASG00005006266 #7	ENSEASG00005032034	LIPE (ENSEASG00005006261) #14	ENSEASG00005006264	CNFN (ENSEASG00005032022) #15	MEGF8 (ENSEASG00005006253) #16	TMEM145 (ENSEASG00005006250) #17	PRR19 (ENSEASG00005006249) #19	ENSEASG00005006247 #18	PAFAH1B3 (ENSEASG00005017155) #20	CIC (ENSEASG00005006234) #21	ERF (ENSEASG00005006230) #22	ZNF526 (ENSEASG00005006227)	GSK3A (ENSEASG00005006229) #23	DEDD2 (ENSEASG00005006226) #24	POU2F2 (ENSEASG00005006218) #25	ZNF574 (ENSEASG00005031171) #26	GRIK5 (ENSEASG00005006176) #27	ATP1A3 (ENSEASG00005004546) #28	RABAC1 (ENSEASG00005004293) #29	ERFL (ENSEASG00005004285) #30	ARHGEF1 (ENSEASG00005003557) #31	ENSEASG00005025039 #32	ENSEASG00005003466 ##33	DMRTC2 (ENSEASG00005003463) #34	ENSEASG00005003460 #35	ENSEASG00005006281 #7
Horse	MODERN SPECIES	1	ENSECAG00000053054 #13	ENSECAG00000020364 #7	LIPE (ENSECAG00000015074) #14	ENSECAG00000031414 #7	ENSECAG00000052245 #7	ENSECAG00000047722	CXCL17 (ENSECAG00000000790) #13	ENSECAG00000009042 #7	ENSECAG00000039720	ENSECAG00000032940	MEGF8 (ENSECAG00000019381) #16	CNFN (ENSECAG00000017130) #15	TMEM145 (ENSECAG00000000962) #17	PRR19 (ENSECAG00000010956) #19	CIC (ENSECAG00000011342) #21	ERF (ENSECAG00000018426) #22	GSK3A (ENSECAG00000019484) #23	ZNF526 (ENSECAG00000003502)	DEDD2 (ENSECAG00000003772) #24	POU2F2 (ENSECAG00000004906) #25	ZNF574 (ENSECAG00000005773) #26	GRIK5 (ENSECAG00000018739) #27	ATP1A3 (ENSECAG00000024155) #28	RABAC1 (ENSECAG00000006670) #29	ARHGEF1 (ENSECAG00000035888) #31	LYPD4 (ENSECAG00000019163) #35	CD79A (ENSECAG00000007198) #32	RPS19 (ENSECAG00000009738) ##33	DMRTC2 (ENSECAG00000018349) #34	ENSECAG00000019324 #7	ENSECAG00000054958 #7
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00940000164580	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.b.b #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.e.b #33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.a.a.b #7
Megabat	MODERN SPECIES	1696												MEGF8 (ENSPVAG00000016809) #16	TMEM145 (ENSPVAG00000016808) #17	PAFAH1B3 (ENSPVAG00000016807) #20	CIC (ENSPVAG00000016806) #21	ERF (ENSPVAG00000016805) #22	GSK3A (ENSPVAG00000016802) #23	DEDD2 (ENSPVAG00000016800) #24
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00940000164580	ENSGT00530000063351.b ##35	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a.b.b #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a.b #35	ENSGT01100000263479.D.a.b.a.b.a #7
Microbat	MODERN SPECIES	1427				ENSMLUG00000028603 #7	ENSMLUG00000024374 #7	ENSMLUG00000022800 ##7	CXCL17 (ENSMLUG00000016757) #13	ENSMLUG00000008187	LIPE (ENSMLUG00000016739) #14	CNFN (ENSMLUG00000016735) #15	MEGF8 (ENSMLUG00000016706) #16	TMEM145 (ENSMLUG00000016682) #17	PRR19 (ENSMLUG00000016675) #19	PAFAH1B3 (ENSMLUG00000016667) #20	CIC (ENSMLUG00000016650) #21	ERF (ENSMLUG00000016639) #22	GSK3A (ENSMLUG00000016622) #23	ZNF526 (ENSMLUG00000016619)	ENSMLUG00000005352	DEDD2 (ENSMLUG00000016612) #24	POU2F2 (ENSMLUG00000014682) #25	ZNF574 (ENSMLUG00000014677) #26	GRIK5 (ENSMLUG00000014661) #27	ATP1A3 (ENSMLUG00000014647) #28	RABAC1 (ENSMLUG00000022885) #29
Greater horseshoe bat	MODERN SPECIES	6	LYPD3 (ENSRFEG00010019417)	ENSRFEG00010019388	TEX101 (ENSRFEG00010019311) ##35	ENSRFEG00010019285 ##35	ENSRFEG00010018708 #7	ENSRFEG00010018459 #7	ENSRFEG00010018437	CXCL17 (ENSRFEG00010018405) #13	LIPE (ENSRFEG00010018364) #14	CNFN (ENSRFEG00010018318) #15	MEGF8 (ENSRFEG00010018262) #16	TMEM145 (ENSRFEG00010018204) #17	PRR19 (ENSRFEG00010018186) #19	PAFAH1B3 (ENSRFEG00010018154) #20	CIC (ENSRFEG00010017983) #21	ERF (ENSRFEG00010017899) #22	GSK3A (ENSRFEG00010017776) #23	ZNF526 (ENSRFEG00010017756)	DEDD2 (ENSRFEG00010017687) #24	POU2F2 (ENSRFEG00010017530) #25	ZNF574 (ENSRFEG00010017506) #26	GRIK5 (ENSRFEG00010017406) #27	ATP1A3 (ENSRFEG00010017150) #28	RABAC1 (ENSRFEG00010017020) #29	ERFL (ENSRFEG00010016938) #30	ARHGEF1 (ENSRFEG00010016400) #31	CD79A (ENSRFEG00010016343) #32	ENSRFEG00010016186 ##33	DMRTC2 (ENSRFEG00010016064) #34	LYPD4 (ENSRFEG00010015914) #35	ENSRFEG00010015843 #7
Atlantogenata	ANCESTRAL SPECIES	142						ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29
Tenrec	MODERN SPECIES	16595																ERF (ENSETEG00000005976) #22
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.a.a ##35	ENSGT01100000263479.D.a #7	ENSGT00390000002861 #13	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00940000153981.B #17	ENSGT00390000010703 #19	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29
Elephant	MODERN SPECIES	375	ENSLAFG00000031988	ENSLAFG00000030722	ENSLAFG00000028809	ENSLAFG00000026795	ENSLAFG00000026510	ENSLAFG00000011795	ENSLAFG00000027437 ##35	ENSLAFG00000017467 #7	CXCL17 (ENSLAFG00000016397) #13	LIPE (ENSLAFG00000028682) #14	CNFN (ENSLAFG00000022262) #15	ENSLAFG00000027309 #16	TMEM145 (ENSLAFG00000023281) #17	PRR19 (ENSLAFG00000029797) #19	PAFAH1B3 (ENSLAFG00000031937) #20	ERF (ENSLAFG00000021591) #22	GSK3A (ENSLAFG00000015460) #23	DEDD2 (ENSLAFG00000030947) #24	POU2F2 (ENSLAFG00000009508) #25	ZNF574 (ENSLAFG00000000308) #26	GRIK5 (ENSLAFG00000007733) #27	ATP1A3 (ENSLAFG00000003415) #28	RABAC1 (ENSLAFG00000011334) #29
Hyrax	MODERN SPECIES	4397								CXCL17 (ENSPCAG00000017044) #13	LIPE (ENSPCAG00000017036) #14	CNFN (ENSPCAG00000017035) #15	MEGF8 (ENSPCAG00000017025) #16	TMEM145 (ENSPCAG00000017017) #17	PRR19 (ENSPCAG00000017015) #19	PAFAH1B3 (ENSPCAG00000017013) #20	CIC (ENSPCAG00000017001) #21	ERF (ENSPCAG00000016986) #22	GSK3A (ENSPCAG00000016967) #23	ZNF526 (ENSPCAG00000016959)	DEDD2 (ENSPCAG00000016955) #24
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00940000161038	ENSGT00940000162336	ENSGT00940000161392	ENSGT01100000263479.C ##7	ENSGT01100000263479.B ##7	ENSGT00940000161167.b.a	ENSGT01100000263479.E.h.b ##7	ENSGT01100000263479.A.g.a.a.a ##7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00390000010703 #19	ENSGT00940000153981.B #17	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a #35	ENSGT00530000063351.b ##35
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000161392	ENSGT01100000263479.C ##7	ENSGT01100000263479.B ##7	ENSGT00940000161167.b.a	ENSGT01100000263479.E.h.b ##7	ENSGT01100000263479.D.b ##7	ENSGT01100000263479.A.g.a.a.a ##7	ENSGT01100000263479.A.g.a.b ##7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00390000010703 #19	ENSGT00940000153981.B #17	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT01040000241026	ENSGT00940000163212.A #30	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a #35
Diprotodontia	ANCESTRAL SPECIES	52	ENSGT00940000161392	ENSGT01100000263479.C ##7	ENSGT01100000263479.B ##7	ENSGT00940000161167.b.a	ENSGT01100000263479.D.b ##7	ENSGT01100000263479.A.g.a.a.a ##7	ENSGT01100000263479.A.g.a.b ##7	ENSGT01100000263479.A.g.a.a.b ##7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00390000010703 #19	ENSGT00940000153981.B #17	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT01040000241026	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a #35	ENSGT01080000257333.D.d.a.a
Wallaby	MODERN SPECIES	12187																ERF (ENSMEUG00000012268) #22
Diprotodontia_a	ANCESTRAL SPECIES	45	ENSGT00940000161392	ENSGT01100000263479.C ##7	ENSGT01100000263479.B ##7	ENSGT00940000161167.b.a	ENSGT01100000263479.D.b ##7	ENSGT01100000263479.A.g.a.a.a ##7	ENSGT01100000263479.A.g.a.b ##7	ENSGT01100000263479.A.g.a.a.b ##7	ENSGT00730000111056 #14	ENSGT00940000161202.b #15	ENSGT00940000160262 #16	ENSGT00390000010703 #19	ENSGT00940000153981.B #17	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476 #28	ENSGT00390000010549 #29	ENSGT01040000241026	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00390000013102.f ##33	ENSGT00940000161904 #34	ENSGT00530000063351.a #35	ENSGT01080000257333.D.d.a.a
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	783											ENSVURG00010009849 ##7	ENSVURG00010009835 #19	TMEM145 (ENSVURG00010009799) #17	PAFAH1B3 (ENSVURG00010009793) #20	ENSVURG00010009779 #21	ERF (ENSVURG00010009762) #22	GSK3A (ENSVURG00010009697) #23	ZNF526 (ENSVURG00010009687)	DEDD2 (ENSVURG00010009683) #24	POU2F2 (ENSVURG00010009672) #25	ZNF574 (ENSVURG00010009667) #26	GRIK5 (ENSVURG00010009647) #27	ATP1A3 (ENSVURG00010009395) #28	RABAC1 (ENSVURG00010009370) #29	ENSVURG00010009363 #22	ARHGEF1 (ENSVURG00010009107) #31	CD79A (ENSVURG00010009070) #32	ENSVURG00010009061 ##33	ENSVURG00010009054 #34	ENSVURG00010009027 #35	ENSVURG00010009015
Common wonbat	MODERN SPECIES	783		ENSVURG00010009849 ##7	ENSVURG00010009835 #19	TMEM145 (ENSVURG00010009799) #17	PAFAH1B3 (ENSVURG00010009793) #20	ENSVURG00010009779 #21	ERF (ENSVURG00010009762) #22	GSK3A (ENSVURG00010009697) #23	ZNF526 (ENSVURG00010009687)	DEDD2 (ENSVURG00010009683) #24	POU2F2 (ENSVURG00010009672) #25	ZNF574 (ENSVURG00010009667) #26	GRIK5 (ENSVURG00010009647) #27	ATP1A3 (ENSVURG00010009395) #28	RABAC1 (ENSVURG00010009370) #29	ENSVURG00010009363 #22	ARHGEF1 (ENSVURG00010009107) #31	CD79A (ENSVURG00010009070) #32	ENSVURG00010009061 ##33	ENSVURG00010009054 #34	ENSVURG00010009027 #35	ENSVURG00010009015	ENSVURG00010009009 ##35	LYPD3 (ENSVURG00010009002)	PHLDB3 (ENSVURG00010008990)	ETHE1 (ENSVURG00010008981)	ZNF575 (ENSVURG00010008965)	XRCC1 (ENSVURG00010008919)	ENSVURG00010008902	IRGQ (ENSVURG00010008891)	ZNF428 (ENSVURG00010008882)
koala	DUPLICATION
koala	MODERN SPECIES	100	BCL3 (ENSPCIG00000001877)	CEACAM16 (ENSPCIG00000001694) ##7	ENSPCIG00000001678 ##7	ENSPCIG00000033074	ENSPCIG00000022892	ENSPCIG00000012522 ##7	ENSPCIG00000033973 ##7	ENSPCIG00000034185 ##7	ENSPCIG00000020891 ##7	LIPE (ENSPCIG00000004879) #14	ENSPCIG00000004873 #15	MEGF8 (ENSPCIG00000037329) #16	ENSPCIG00000020885 #19	TMEM145 (ENSPCIG00000020884) #17	PAFAH1B3 (ENSPCIG00000034607) #20	ERF (ENSPCIG00000020875) #22	GSK3A (ENSPCIG00000020874) #23	ZNF526 (ENSPCIG00000020873)	ENSPCIG00000032925 #24	POU2F2 (ENSPCIG00000005189) #25	ZNF574 (ENSPCIG00000005174) #26	GRIK5 (ENSPCIG00000013763) #27	ATP1A3 (ENSPCIG00000013743) #28	RABAC1 (ENSPCIG00000013738) #29	ENSPCIG00000013735	ENSPCIG00000004723 #22	ARHGEF1 (ENSPCIG00000004739) #31	CD79A (ENSPCIG00000023360) #32	ENSPCIG00000020871 ##33	ENSPCIG00000020868 #34	ENSPCIG00000020865 ##7
koala	MODERN SPECIES	100	ENSPCIG00000004873 #15	MEGF8 (ENSPCIG00000037329) #16	ENSPCIG00000020885 #19	TMEM145 (ENSPCIG00000020884) #17	PAFAH1B3 (ENSPCIG00000034607) #20	ERF (ENSPCIG00000020875) #22	GSK3A (ENSPCIG00000020874) #23	ZNF526 (ENSPCIG00000020873)	ENSPCIG00000032925 #24	POU2F2 (ENSPCIG00000005189) #25	ZNF574 (ENSPCIG00000005174) #26	GRIK5 (ENSPCIG00000013763) #27	ATP1A3 (ENSPCIG00000013743) #28	RABAC1 (ENSPCIG00000013738) #29	ENSPCIG00000013735	ENSPCIG00000004723 #22	ARHGEF1 (ENSPCIG00000004739) #31	CD79A (ENSPCIG00000023360) #32	ENSPCIG00000020871 ##33	ENSPCIG00000020868 #34	ENSPCIG00000020865 ##7	ENSPCIG00000005474 #35	ENSPCIG00000020859	LYPD3 (ENSPCIG00000020854)	PHLDB3 (ENSPCIG00000020852)	ENSPCIG00000020851	ZNF575 (ENSPCIG00000020850)	XRCC1 (ENSPCIG00000020849)	ENSPCIG00000020848	IRGQ (ENSPCIG00000020847)	ZNF428 (ENSPCIG00000020846)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	16	BCL3 (ENSOANG00000046426)	CEACAM16 (ENSOANG00000012180) ##7	ENSOANG00000050885 ##7	ENSOANG00000049127 ##7	ENSOANG00000044640 ##7	ENSOANG00000009705 ##7	ENSOANG00000044064 ##7	LIPE (ENSOANG00000039638) #14	ENSOANG00000041365	CNFN (ENSOANG00000004593) #15	MEGF8 (ENSOANG00000037647) #16	TMEM145 (ENSOANG00000012875) #17	ENSOANG00000037208 #19	PAFAH1B3 (ENSOANG00000021299) #20	CIC (ENSOANG00000036051) #21	ENSOANG00000045058 #22	GSK3A (ENSOANG00000037968) #23	DEDD2 (ENSOANG00000036383) #24	POU2F2 (ENSOANG00000044045) #25	ZNF574 (ENSOANG00000047070) #26	GRIK5 (ENSOANG00000012545) #27	ATP1A3 (ENSOANG00000042242) #28	ENSOANG00000045537 #29	ENSOANG00000013662 #22	ARHGEF1 (ENSOANG00000013661) #31	CD79A (ENSOANG00000039470) #32	RPS19 (ENSOANG00000013660) #33	ENSOANG00000013938 #34	ENSOANG00000013939	ENSOANG00000004056 #35	LYPD3 (ENSOANG00000004055)
Platypus	MODERN SPECIES	16	ENSOANG00000041365	CNFN (ENSOANG00000004593) #15	MEGF8 (ENSOANG00000037647) #16	TMEM145 (ENSOANG00000012875) #17	ENSOANG00000037208 #19	PAFAH1B3 (ENSOANG00000021299) #20	CIC (ENSOANG00000036051) #21	ENSOANG00000045058 #22	GSK3A (ENSOANG00000037968) #23	DEDD2 (ENSOANG00000036383) #24	POU2F2 (ENSOANG00000044045) #25	ZNF574 (ENSOANG00000047070) #26	GRIK5 (ENSOANG00000012545) #27	ATP1A3 (ENSOANG00000042242) #28	ENSOANG00000045537 #29	ENSOANG00000013662 #22	ARHGEF1 (ENSOANG00000013661) #31	CD79A (ENSOANG00000039470) #32	RPS19 (ENSOANG00000013660) #33	ENSOANG00000013938 #34	ENSOANG00000013939	ENSOANG00000004056 #35	LYPD3 (ENSOANG00000004055)	PHLDB3 (ENSOANG00000002789)	ETHE1 (ENSOANG00000049518)	ZNF575 (ENSOANG00000049503)	XRCC1 (ENSOANG00000010767)	IRGQ (ENSOANG00000043420)	ZNF428 (ENSOANG00000041187)	CADM4 (ENSOANG00000011306)	KCNN4 (ENSOANG00000008394)
Sauria	ANCESTRAL SPECIES	43	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT00940000162297.h	ENSGT00390000013102.e.a ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265	ENSGT00940000162297.g	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16
Archelosauria	ANCESTRAL SPECIES	48	ENSGT00940000159046.C	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT00940000162297.h	ENSGT00390000013102.e.a ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a	ENSGT00940000162297.g	ENSGT00940000154265.bc	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576
Cryptodira	ANCESTRAL SPECIES	68	ENSGT00940000159046.C	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b #33	ENSGT00390000013102.e.a ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a	ENSGT00940000162297.g	ENSGT00940000154265.bc	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29
Testudinoidea	ANCESTRAL SPECIES	66				ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b #33	ENSGT00390000013102.e.a ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a.d	ENSGT00940000154265.ac.a.c	ENSGT00940000154265.bc.a.a.b.b	ENSGT00940000162297.g	ENSGT00940000154265.bc.a.b.b	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29
Emydidae	ANCESTRAL SPECIES	106					ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b #33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a.d	ENSGT00940000154265.ac.a.c	ENSGT00940000154265.bc.a.a.b.b	ENSGT00940000162297.g.b	ENSGT00940000154265.bc.a.b.b	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000160115 #25	ENSGT00940000158852 #27	ENSGT00940000160476.b #28
Three-toed box turtle	MODERN SPECIES	1693																ENSTMTG00000016245 #22
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	1096					ENSCPBG00000014567	CADM4 (ENSCPBG00000014564)	RPS19 (ENSCPBG00000014561) #33	ENSCPBG00000014558	ENSCPBG00000014553	ENSCPBG00000014550	ENSCPBG00000014533	ENSCPBG00000013759	ENSCPBG00000013744	PAFAH1B3 (ENSCPBG00000013743) #20	CIC (ENSCPBG00000013740) #21	ENSCPBG00000013738 #22	GSK3A (ENSCPBG00000013663) #23	ENSCPBG00000013652	POU2F2 (ENSCPBG00000013649) #25	GRIK5 (ENSCPBG00000013608) #27	ATP1A3 (ENSCPBG00000003845) #28
painted turtle	MODERN SPECIES	1905																ENSCPBG00000011264 #22
Testudinidae	ANCESTRAL SPECIES	125													ENSGT00940000154265.bc.a.b.a	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24
Goode s thornscrub tortoise	MODERN SPECIES	122	ENSGEVG00005017264	ENSGEVG00005017282	ENSGEVG00005017306	ENSGEVG00005017373	ENSGEVG00005017498	CADM4 (ENSGEVG00005017512)	ENSGEVG00005017527 ##33	ENSGEVG00005017544	ENSGEVG00005017604	ENSGEVG00005012802	ENSGEVG00005012850	ENSGEVG00005012863	ENSGEVG00005012907	ENSGEVG00005013000 #34	PAFAH1B3 (ENSGEVG00005013045) #20	ERF (ENSGEVG00005013248) #22
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	447											ENSCABG00000001132	ENSCABG00000001177	ENSCABG00000001184	PAFAH1B3 (ENSCABG00000001186) #20	CIC (ENSCABG00000001195) #21	ENSCABG00000001734 #22	GSK3A (ENSCABG00000001745) #23	ZNF526 (ENSCABG00000002042)	DEDD2 (ENSCABG00000002045) #24
Abingdon island giant tortoise	MODERN SPECIES	2855													ENSCABG00000002362 #28	ENSCABG00000002360	ENSCABG00000002358	ENSCABG00000002344 #22
Archosauria	DUPLICATION
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000157292.g #22
Aves	ANCESTRAL SPECIES	73														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Neognathae	ANCESTRAL SPECIES	57														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000157292.g #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000157292.g #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000157292.g #22
Chicken	MODERN SPECIES	95																ENSGALG00010000360 #22	ENSGALG00010000381
Neognathae_b	ANCESTRAL SPECIES	55														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Passeriformes	ANCESTRAL SPECIES	62														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Passeriformes_d	ANCESTRAL SPECIES	62														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Passeriformes_g	ANCESTRAL SPECIES	75														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Passeroidea	ANCESTRAL SPECIES	78														ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Zebra finch	MODERN SPECIES	81	ENSTGUG00000029674 #27	ENSTGUG00000024133 #26	ENSTGUG00000022455	ENSTGUG00000022908 #25	ENSTGUG00000026081	ENSTGUG00000023007 #24	ENSTGUG00000026899	ENSTGUG00000028609 #22	ENSTGUG00000026147 ##33	ENSTGUG00000022975	ENSTGUG00000028679	ENSTGUG00000023730	ENSTGUG00000024589	ENSTGUG00000028924	ENSTGUG00000019671 ##33	ENSTGUG00000026794 #22	ENSTGUG00000026671 #24	ENSTGUG00000019607 #25	ENSTGUG00000023561 #26	ENSTGUG00000020987 #27	ENSTGUG00000014779 #28	ENSTGUG00000022090 #22	ENSTGUG00000027419 #31	ENSTGUG00000026665 #31	ENSTGUG00000026222 #32	ENSTGUG00000019661	ENSTGUG00000019773 #17	ENSTGUG00000028523	ENSTGUG00000022819 #14	ENSTGUG00000025362 #14	ENSTGUG00000020741
Neognathae_c	ANCESTRAL SPECIES																	ENSGT00940000157292.g #22
Kakapo	MODERN SPECIES	77																ERF (ENSSHBG00005019409) #22
Archosauria	ANCESTRAL SPECIES	71												ENSGT00730000111407	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT00940000162297.h	ENSGT00940000157292.h #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Australian saltwater crocodile	MODERN SPECIES	45	ENSCPRG00005012351	ENSCPRG00005012346	SMIM1 (ENSCPRG00005012344)	LRRC47 (ENSCPRG00005012342)	CEP104 (ENSCPRG00005012311)	DFFB (ENSCPRG00005012291)	C1orf174 (ENSCPRG00005012263)	ENSCPRG00005012252	ENSCPRG00005012249	ZNF576 (ENSCPRG00005012246)	CADM4 (ENSCPRG00005012239)	ENSCPRG00005012227	ENSCPRG00005012223	ENSCPRG00005012207	ENSCPRG00005012194 #34	ERF (ENSCPRG00005012135) #22	GSK3A (ENSCPRG00005012074) #23	ZNF526 (ENSCPRG00005012067)	DEDD2 (ENSCPRG00005012064) #24	ENSCPRG00005012061	POU2F2 (ENSCPRG00005012043) #25	ZNF574 (ENSCPRG00005012035) #26	GRIK5 (ENSCPRG00005011999) #27	ATP1A3 (ENSCPRG00005011977) #28	AJAP1 (ENSCPRG00005011967)	NPHP4 (ENSCPRG00005011932)	KCNAB2 (ENSCPRG00005011911)	CHD5 (ENSCPRG00005011501)	ENSCPRG00005011425	RNF207 (ENSCPRG00005011387)	ICMT (ENSCPRG00005011372)
Aves	ANCESTRAL SPECIES	73							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Neognathae	ANCESTRAL SPECIES	57							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Neognathae_b	ANCESTRAL SPECIES	55							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Passeriformes	ANCESTRAL SPECIES	62							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32	ENSGT00950000185905
Passeriformes_d	ANCESTRAL SPECIES	62							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Passeriformes_g	ANCESTRAL SPECIES	75							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Passeroidea	ANCESTRAL SPECIES	78							ENSGT00940000153599.B.a	ENSGT00940000160803	ENSGT00940000157292.g #22	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000157292.h #22	ENSGT00940000161180.z #31	ENSGT00940000154363.A #32
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	81	ENSTGUG00000027419 #31	ENSTGUG00000022090 #22	ENSTGUG00000014779 #28	ENSTGUG00000020987 #27	ENSTGUG00000023561 #26	ENSTGUG00000019607 #25	ENSTGUG00000026671 #24	ENSTGUG00000026794 #22	ENSTGUG00000019671 ##33	ENSTGUG00000028924	ENSTGUG00000024589	ENSTGUG00000023730	ENSTGUG00000028679	ENSTGUG00000022975	ENSTGUG00000026147 ##33	ENSTGUG00000028609 #22	ENSTGUG00000026899	ENSTGUG00000023007 #24	ENSTGUG00000026081	ENSTGUG00000022908 #25	ENSTGUG00000022455	ENSTGUG00000024133 #26	ENSTGUG00000029674 #27	ENSTGUG00000020792 #28	RABAC1 (ENSTGUG00000024884) #29	ENSTGUG00000028106 #22	ENSTGUG00000021082 #31	ENSTGUG00000022049 #32	SMG9 (ENSTGUG00000023700)	PPP2R1A (ENSTGUG00000016304)	ETFB (ENSTGUG00000027843)
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	81	ENSTGUG00000024589	ENSTGUG00000023730	ENSTGUG00000028679	ENSTGUG00000022975	ENSTGUG00000026147 ##33	ENSTGUG00000028609 #22	ENSTGUG00000026899	ENSTGUG00000023007 #24	ENSTGUG00000026081	ENSTGUG00000022908 #25	ENSTGUG00000022455	ENSTGUG00000024133 #26	ENSTGUG00000029674 #27	ENSTGUG00000020792 #28	RABAC1 (ENSTGUG00000024884) #29	ENSTGUG00000028106 #22	ENSTGUG00000021082 #31	ENSTGUG00000022049 #32	SMG9 (ENSTGUG00000023700)	PPP2R1A (ENSTGUG00000016304)	ETFB (ENSTGUG00000027843)	ENSTGUG00000028313	ENSTGUG00000022660	TMEM147 (ENSTGUG00000020712)	ENSTGUG00000015854	MAG (ENSTGUG00000026019)	ENSTGUG00000026313	ENSTGUG00000029333 #16	ENSTGUG00000018927	ENSTGUG00000023337	ENSTGUG00000028198 #14
Zebra finch	MODERN SPECIES	81	ENSTGUG00000026899	ENSTGUG00000028609 #22	ENSTGUG00000026147 ##33	ENSTGUG00000022975	ENSTGUG00000028679	ENSTGUG00000023730	ENSTGUG00000024589	ENSTGUG00000028924	ENSTGUG00000019671 ##33	ENSTGUG00000026794 #22	ENSTGUG00000026671 #24	ENSTGUG00000019607 #25	ENSTGUG00000023561 #26	ENSTGUG00000020987 #27	ENSTGUG00000014779 #28	ENSTGUG00000022090 #22	ENSTGUG00000027419 #31	ENSTGUG00000026665 #31	ENSTGUG00000026222 #32	ENSTGUG00000019661	ENSTGUG00000019773 #17	ENSTGUG00000028523	ENSTGUG00000022819 #14	ENSTGUG00000025362 #14	ENSTGUG00000020741	ENSTGUG00000020146	ENSTGUG00000018924	ENSTGUG00000025744	ENSTGUG00000020661	ENSTGUG00000023666	ENSTGUG00000029431
Lepidosauria	ANCESTRAL SPECIES	113			ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000154265.yb	ENSGT00940000162297.g	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16	ENSGT00940000161202.b #15	ENSGT00940000157920.b	ENSGT00730000111056 #14
tuatara	MODERN SPECIES	1580	ENSSPUG00000015920	ENSSPUG00000015934	ZNF576 (ENSSPUG00000015942)	ENSSPUG00000015950	CADM4 (ENSSPUG00000015976)	RPS19 (ENSSPUG00000016051) ##33	ENSSPUG00000016105	ENSSPUG00000016251	ENSSPUG00000016293 #21	ENSSPUG00000016498	ENSSPUG00000016510	ENSSPUG00000016520	PAFAH1B3 (ENSSPUG00000016531) #20	ENSSPUG00000016538 #21	ENSSPUG00000016548 #21	ERF (ENSSPUG00000016555) #22	GSK3A (ENSSPUG00000016559) #23	ZNF526 (ENSSPUG00000016569)	DEDD2 (ENSSPUG00000016572) #24	POU2F2 (ENSSPUG00000016579) #25	GRIK5 (ENSSPUG00000016676) #27	ATP1A3 (ENSSPUG00000016698) #28	RABAC1 (ENSSPUG00000016746) #29	ENSSPUG00000016770 #31	ENSSPUG00000016807 #31	CD79A (ENSSPUG00000016813) #32	PRDM7 (ENSSPUG00000016819)	TMEM145 (ENSSPUG00000016829) #17	ENSSPUG00000016847	ENSSPUG00000016852	LIPE (ENSSPUG00000016872) #14
Episquamata	ANCESTRAL SPECIES	7	ENSGT00950000183007.a.b	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00960000189159	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000154265.yb	ENSGT00940000162297.g	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16	ENSGT00940000161202.b #15	ENSGT00940000157920.b	ENSGT00730000111056 #14	ENSGT01100000263479.D.a #7	ENSGT01100000263479.E ##7	ENSGT00950000185100	ENSGT01000000215536.B	ENSGT01000000215536.A
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00960000189159	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16	ENSGT00940000161202.b #15	ENSGT00940000157920.b	ENSGT00730000111056 #14	ENSGT01100000263479.D.a #7	ENSGT01100000263479.E ##7	ENSGT01050000244883.C	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00960000189159	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16	ENSGT00940000161202.b #15	ENSGT00940000157920.b	ENSGT00730000111056 #14	ENSGT01100000263479.B ##7	ENSGT01100000263479.D.a #7	ENSGT01100000263479.E.d ##7	ENSGT01100000263479.E.c ##7
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT01020000230438.B.a.a.bb.a	ENSGT01020000230438.B.a.a.bb.b	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16	ENSGT00940000161202.b #15	ENSGT00940000157920.b	ENSGT00730000111056 #14	ENSGT01100000263479.B ##7	ENSGT01000000215536.B	ENSGT01000000215536.A.c	ENSGT00940000156631.A
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT01020000230438.B.a.a.bb.b	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00990000208224.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f ##33	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00960000189159	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B #17
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	77	CADM4 (ENSPTXG00000019143)	RPS19 (ENSPTXG00000019142) ##33	ENSPTXG00000019140	PAFAH1B3 (ENSPTXG00000019138) #20	CIC (ENSPTXG00000019136) #21	ENSPTXG00000019134 #22	GSK3A (ENSPTXG00000019133) #23	ZNF526 (ENSPTXG00000019131)	DEDD2 (ENSPTXG00000019130) #24	ZNF574 (ENSPTXG00000019128) #26	GRIK5 (ENSPTXG00000019124) #27	ENSPTXG00000019122	ENSPTXG00000019102 #28	RABAC1 (ENSPTXG00000019099) #29	ENSPTXG00000019098 #15	ENSPTXG00000019097 #22	ARHGEF1 (ENSPTXG00000019095) #31	ENSPTXG00000019093 #32	ENSPTXG00000019092	PRDM7 (ENSPTXG00000019091)	ENSPTXG00000019090	TMEM145 (ENSPTXG00000019089) #17	MEGF8 (ENSPTXG00000019087) #16	ENSPTXG00000019086	LIPE (ENSPTXG00000019085) #14	ENSPTXG00000019082	ENSPTXG00000019081	ENSPTXG00000019080	ENSPTXG00000019070 ##7	ENSPTXG00000019069	ENSPTXG00000019068
Eastern brown snake	MODERN SPECIES	77						ENSPTXG00000013281	ENSPTXG00000013280	ENSPTXG00000013279	ENSPTXG00000013278	ENSPTXG00000013276	CADM4 (ENSPTXG00000019143)	RPS19 (ENSPTXG00000019142) ##33	ENSPTXG00000019140	PAFAH1B3 (ENSPTXG00000019138) #20	CIC (ENSPTXG00000019136) #21	ENSPTXG00000019134 #22	GSK3A (ENSPTXG00000019133) #23	ZNF526 (ENSPTXG00000019131)	DEDD2 (ENSPTXG00000019130) #24	ZNF574 (ENSPTXG00000019128) #26	GRIK5 (ENSPTXG00000019124) #27	ENSPTXG00000019122	ENSPTXG00000019102 #28	RABAC1 (ENSPTXG00000019099) #29	ENSPTXG00000019098 #15	ENSPTXG00000019097 #22	ARHGEF1 (ENSPTXG00000019095) #31	ENSPTXG00000019093 #32	ENSPTXG00000019092	PRDM7 (ENSPTXG00000019091)	ENSPTXG00000019090
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	155	ENSNSUG00000009807	CADM4 (ENSNSUG00000009808)	RPS19 (ENSNSUG00000009809) ##33	ENSNSUG00000009810	GBP6 (ENSNSUG00000009811)	CIC (ENSNSUG00000009812) #21	ENSNSUG00000009813 #22	GSK3A (ENSNSUG00000009814) #23	ZNF526 (ENSNSUG00000009825)	DEDD2 (ENSNSUG00000009826) #24	ZNF574 (ENSNSUG00000009827) #26	GRIK5 (ENSNSUG00000009828) #27	ATP1A3 (ENSNSUG00000009829) #28	ENSNSUG00000009871	ENSNSUG00000009872 #15	ENSNSUG00000009873 #22	ARHGEF1 (ENSNSUG00000009875) #31	ENSNSUG00000009876 #32	PRDM7 (ENSNSUG00000009877)	ENSNSUG00000009878	ENSNSUG00000009879	MEGF8 (ENSNSUG00000009880) #16	ENSNSUG00000009881 #15	ENSNSUG00000009882	LIPE (ENSNSUG00000009883) #14	ENSNSUG00000009885 ##7	ENSNSUG00000009886 ##7	ENSNSUG00000009959 ##7	ENSNSUG00000009960	ENSNSUG00000009962 ##7	ENSNSUG00000009963
Mainland tiger snake	MODERN SPECIES	155	LYPD3 (ENSNSUG00000009796)	ENSNSUG00000009797	ENSNSUG00000009798	ETHE1 (ENSNSUG00000009800)	XRCC1 (ENSNSUG00000009801)	ENSNSUG00000009802	ENSNSUG00000009803	ENSNSUG00000009804	ENSNSUG00000009805	ENSNSUG00000009807	CADM4 (ENSNSUG00000009808)	RPS19 (ENSNSUG00000009809) ##33	ENSNSUG00000009810	GBP6 (ENSNSUG00000009811)	CIC (ENSNSUG00000009812) #21	ENSNSUG00000009813 #22	GSK3A (ENSNSUG00000009814) #23	ZNF526 (ENSNSUG00000009825)	DEDD2 (ENSNSUG00000009826) #24	ZNF574 (ENSNSUG00000009827) #26	GRIK5 (ENSNSUG00000009828) #27	ATP1A3 (ENSNSUG00000009829) #28	ENSNSUG00000009871	ENSNSUG00000009872 #15	ENSNSUG00000009873 #22	ARHGEF1 (ENSNSUG00000009875) #31	ENSNSUG00000009876 #32	PRDM7 (ENSNSUG00000009877)	ENSNSUG00000009878	ENSNSUG00000009879	MEGF8 (ENSNSUG00000009880) #16
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	3083																ENSLLTG00000003108 #22	ARHGEF1 (ENSLLTG00000003133) #31
Blue-lipped sea krait	MODERN SPECIES	3607																ENSLLTG00000001790 #22	GSK3A (ENSLLTG00000001798) #23	ZNF526 (ENSLLTG00000001809)	DEDD2 (ENSLLTG00000001815) #24
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	11	ENSNNAG00000004297 ##33	ENSNNAG00000004342	ENSNNAG00000004375	ENSNNAG00000004452	PAFAH1B3 (ENSNNAG00000004692) #20	CIC (ENSNNAG00000004736) #21	ENSNNAG00000005013 #22	GSK3A (ENSNNAG00000005075) #23	DEDD2 (ENSNNAG00000005193) #24	ENSNNAG00000005224 #25	ENSNNAG00000005281 #25	ZNF574 (ENSNNAG00000005293) #26	GRIK5 (ENSNNAG00000005420) #27	ATP1A3 (ENSNNAG00000006679) #28	ENSNNAG00000013552	ENSNNAG00000013568 #22	ARHGEF1 (ENSNNAG00000013616) #31	ENSNNAG00000013911 #32	ENSNNAG00000013925	PRDM7 (ENSNNAG00000013938)	ENSNNAG00000013959	ENSNNAG00000013984	TMEM145 (ENSNNAG00000014002) #17	MEGF8 (ENSNNAG00000014022) #16	ENSNNAG00000014078	ENSNNAG00000014100	LIPE (ENSNNAG00000014106) #14	ENSNNAG00000014139 ##7	ENSNNAG00000014182 ##7	ENSNNAG00000014215	ENSNNAG00000014265 ##7
Indian cobra	MODERN SPECIES	11	XRCC1 (ENSNNAG00000003829)	ENSNNAG00000004107	ENSNNAG00000004130	ENSNNAG00000004164	ENSNNAG00000004169	ENSNNAG00000004196	ENSNNAG00000004215	ENSNNAG00000004229	CADM4 (ENSNNAG00000004262)	ENSNNAG00000004297 ##33	ENSNNAG00000004342	ENSNNAG00000004375	ENSNNAG00000004452	PAFAH1B3 (ENSNNAG00000004692) #20	CIC (ENSNNAG00000004736) #21	ENSNNAG00000005013 #22	GSK3A (ENSNNAG00000005075) #23	DEDD2 (ENSNNAG00000005193) #24	ENSNNAG00000005224 #25	ENSNNAG00000005281 #25	ZNF574 (ENSNNAG00000005293) #26	GRIK5 (ENSNNAG00000005420) #27	ATP1A3 (ENSNNAG00000006679) #28	ENSNNAG00000013552	ENSNNAG00000013568 #22	ARHGEF1 (ENSNNAG00000013616) #31	ENSNNAG00000013911 #32	ENSNNAG00000013925	PRDM7 (ENSNNAG00000013938)	ENSNNAG00000013959	ENSNNAG00000013984
Laterata	ANCESTRAL SPECIES	17	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00960000190411	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b #33	ENSGT00940000154265.yb	ENSGT00940000162297.g.f	ENSGT00940000154265.`c.d	ENSGT00940000154265.`c.c.a	ENSGT00940000162297.g.e.a	ENSGT00940000154265.`c.c.b	ENSGT00940000162297.g.e.b	ENSGT00950000183199.a.b #20	ENSGT00940000159960 #21	ENSGT00940000157292 #22	ENSGT00520000055635.c.b #23	ENSGT00940000162624	ENSGT00390000008714.b #24	ENSGT00940000160115 #25	ENSGT00940000161799 #26	ENSGT00940000158852 #27	ENSGT00960000189159	ENSGT00940000160476.b #28	ENSGT00390000010549 #29	ENSGT00940000161180 #31	ENSGT00940000154363.A #32	ENSGT00940000158211	ENSGT00940000163576	ENSGT00940000153981.B #17	ENSGT00940000160262 #16
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	59	ENSSMRG00000005808	ENSSMRG00000005822	PAFAH1B3 (ENSSMRG00000005828) #20	CIC (ENSSMRG00000005892) #21	ENSSMRG00000005911 #22	GSK3A (ENSSMRG00000005912) #23	ZNF526 (ENSSMRG00000005914)	DEDD2 (ENSSMRG00000005915) #24	POU2F2 (ENSSMRG00000005916) #25	ZNF574 (ENSSMRG00000005918) #26	GRIK5 (ENSSMRG00000005921) #27	ATP1A3 (ENSSMRG00000005944) #28	ENSSMRG00000005955	RABAC1 (ENSSMRG00000005958) #29	ENSSMRG00000005960 #15	ENSSMRG00000005961 #22	ARHGEF1 (ENSSMRG00000005965) #31	ENSSMRG00000005968 #32	ENSSMRG00000005970	ENSSMRG00000005987	TMEM145 (ENSSMRG00000005989) #17	MEGF8 (ENSSMRG00000006015) #16	CNFN (ENSSMRG00000006024) #15	ENSSMRG00000006026	LIPE (ENSSMRG00000006028) #14	ENSSMRG00000006048 ##7	ENSSMRG00000006064	ENSSMRG00000006077	ENSSMRG00000006081	ENSSMRG00000006099	ENSSMRG00000006100
Argentine black and white tegu	MODERN SPECIES	59	ENSSMRG00000005593	ENSSMRG00000005595	CADM4 (ENSSMRG00000005596)	ENSSMRG00000005627 ##33	ENSSMRG00000005631	ENSSMRG00000005772	ENSSMRG00000005788	ENSSMRG00000005804	ENSSMRG00000005805	ENSSMRG00000005806	ENSSMRG00000005807	ENSSMRG00000005808	ENSSMRG00000005822	PAFAH1B3 (ENSSMRG00000005828) #20	CIC (ENSSMRG00000005892) #21	ENSSMRG00000005911 #22	GSK3A (ENSSMRG00000005912) #23	ZNF526 (ENSSMRG00000005914)	DEDD2 (ENSSMRG00000005915) #24	POU2F2 (ENSSMRG00000005916) #25	ZNF574 (ENSSMRG00000005918) #26	GRIK5 (ENSSMRG00000005921) #27	ATP1A3 (ENSSMRG00000005944) #28	ENSSMRG00000005955	RABAC1 (ENSSMRG00000005958) #29	ENSSMRG00000005960 #15	ENSSMRG00000005961 #22	ARHGEF1 (ENSSMRG00000005965) #31	ENSSMRG00000005968 #32	ENSSMRG00000005970	ENSSMRG00000005987
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	16	PAFAH1B3 (ENSPMRG00000008752) #20	CIC (ENSPMRG00000008732) #21	ENSPMRG00000008723 #22	GSK3A (ENSPMRG00000008717) #23	ZNF526 (ENSPMRG00000008714)	DEDD2 (ENSPMRG00000008710) #24	ENSPMRG00000008701	POU2F2 (ENSPMRG00000008687) #25	ZNF574 (ENSPMRG00000008683) #26	GRIK5 (ENSPMRG00000008664) #27	ENSPMRG00000008651	ATP1A3 (ENSPMRG00000008633) #28	ENSPMRG00000008627 #29	ENSPMRG00000008623 #15	ENSPMRG00000008613	ENSPMRG00000008605 #22	ARHGEF1 (ENSPMRG00000008499) #31	ENSPMRG00000008468 #32	ENSPMRG00000008388	ENSPMRG00000008352	TMEM145 (ENSPMRG00000008338) #17	MEGF8 (ENSPMRG00000008265) #16	ENSPMRG00000008244	ENSPMRG00000008238	LIPE (ENSPMRG00000008202) #14	ENSPMRG00000008182	ENSPMRG00000008175	ENSPMRG00000010183	ENSPMRG00000010177	ENSPMRG00000010168 ##7	ENSPMRG00000010160
Common wall lizard	MODERN SPECIES	16	CADM4 (ENSPMRG00000008941)	RPS19 (ENSPMRG00000008934) #33	ENSPMRG00000008923	ENSPMRG00000008921	ENSPMRG00000008916	ENSPMRG00000008910	ENSPMRG00000008907	ENSPMRG00000008905	ENSPMRG00000008898	ENSPMRG00000008894	ENSPMRG00000008878	ENSPMRG00000008783	ENSPMRG00000008756	PAFAH1B3 (ENSPMRG00000008752) #20	CIC (ENSPMRG00000008732) #21	ENSPMRG00000008723 #22	GSK3A (ENSPMRG00000008717) #23	ZNF526 (ENSPMRG00000008714)	DEDD2 (ENSPMRG00000008710) #24	ENSPMRG00000008701	POU2F2 (ENSPMRG00000008687) #25	ZNF574 (ENSPMRG00000008683) #26	GRIK5 (ENSPMRG00000008664) #27	ENSPMRG00000008651	ATP1A3 (ENSPMRG00000008633) #28	ENSPMRG00000008627 #29	ENSPMRG00000008623 #15	ENSPMRG00000008613	ENSPMRG00000008605 #22	ARHGEF1 (ENSPMRG00000008499) #31	ENSPMRG00000008468 #32