Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155472.a.a #22
Gnathostomata	ANCESTRAL SPECIES	651																ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26
Euteleostomi	ANCESTRAL SPECIES	478															ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT01030000234563.a.a.c.a
Sarcopterygii	ANCESTRAL SPECIES	357												ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT01030000234563.a.a.c.a
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Amniota	ANCESTRAL SPECIES	5	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Mammalia	ANCESTRAL SPECIES	36	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000153661	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Theria	ANCESTRAL SPECIES		ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000153661.b	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Primates	ANCESTRAL SPECIES	12	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.d #37
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.d #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.d #37
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.d #37
Human	MODERN SPECIES	19	MDFIC (ENSG00000135272) #7	TFEC (ENSG00000105967) #8	TES (ENSG00000135269) #9	CAV2 (ENSG00000105971) #10	CAV1 (ENSG00000105974) #11	MET (ENSG00000105976) #12	CAPZA2 (ENSG00000198898) #13	ST7 (ENSG00000004866) #14	ENSG00000288635 #15	WNT2 (ENSG00000105989) #16	CFTR (ENSG00000001626) #17	ASZ1 (ENSG00000154438) #18	CTTNBP2 (ENSG00000077063) #19	LSM8 (ENSG00000128534) #20	ANKRD7 (ENSG00000106013) #21	KCND2 (ENSG00000184408) #22	TSPAN12 (ENSG00000106025) #23	ING3 (ENSG00000071243) #24	CPED1 (ENSG00000106034) #25	WNT16 (ENSG00000002745) #26	FAM3C (ENSG00000196937) #27	PTPRZ1 (ENSG00000106278) #28	AASS (ENSG00000008311) #29	FEZF1 (ENSG00000128610) #30	CADPS2 (ENSG00000081803) #31	RNF133 (ENSG00000188050) #32	RNF148 (ENSG00000235631) #33	TAS2R16 (ENSG00000128519) #34	SLC13A1 (ENSG00000081800) #35	IQUB (ENSG00000164675) #36	NDUFA5 (ENSG00000128609) #37
Pan	ANCESTRAL SPECIES	13	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00950000182802.A.a.a.e.b.b	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT01100000263543.a.g.b.b.b.a.c.b.a	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36
Chimpanzee	MODERN SPECIES	20	MDFIC (ENSPTRG00000019609) #7	TFEC (ENSPTRG00000047353) #8	TES (ENSPTRG00000023877) #9	CAV2 (ENSPTRG00000040031) #10	CAV1 (ENSPTRG00000019613) #11	MET (ENSPTRG00000019614) #12	CAPZA2 (ENSPTRG00000019615) #13	ST7 (ENSPTRG00000019616) #14	WNT2 (ENSPTRG00000019617) #16	ASZ1 (ENSPTRG00000019618) #18	CFTR (ENSPTRG00000019619) #17	CTTNBP2 (ENSPTRG00000019620) #19	LSM8 (ENSPTRG00000046596) #20	ANKRD7 (ENSPTRG00000019622) #21	ENSPTRG00000050664	KCND2 (ENSPTRG00000047469) #22	TSPAN12 (ENSPTRG00000019624) #23	ING3 (ENSPTRG00000019625) #24	CPED1 (ENSPTRG00000019626) #25	ENSPTRG00000044943	WNT16 (ENSPTRG00000019627) #26	FAM3C (ENSPTRG00000022727) #27	ENSPTRG00000043912	ENSPTRG00000045463	PTPRZ1 (ENSPTRG00000019629) #28	AASS (ENSPTRG00000023614) #29	ENSPTRG00000044831	FEZF1 (ENSPTRG00000019631) #30	CADPS2 (ENSPTRG00000019632) #31	ENSPTRG00000044019 #33	TAS2R16 (ENSPTRG00000019634) #34
Bonobo	MODERN SPECIES	20	ENSPPAG00000004955 #8	TES (ENSPPAG00000034692) #9	CAV2 (ENSPPAG00000042201) #10	CAV1 (ENSPPAG00000036739) #11	MET (ENSPPAG00000038004) #12	CAPZA2 (ENSPPAG00000043436) #13	ENSPPAG00000042892	ST7 (ENSPPAG00000028019) #14	WNT2 (ENSPPAG00000030407) #16	ASZ1 (ENSPPAG00000041362) #18	CFTR (ENSPPAG00000040492) #17	CTTNBP2 (ENSPPAG00000032264) #19	ENSPPAG00000043228 #20	ANKRD7 (ENSPPAG00000011992) #21	ENSPPAG00000026407	KCND2 (ENSPPAG00000034678) #22	TSPAN12 (ENSPPAG00000033647) #23	ING3 (ENSPPAG00000029024) #24	CPED1 (ENSPPAG00000036887) #25	ENSPPAG00000032331	WNT16 (ENSPPAG00000028372) #26	FAM3C (ENSPPAG00000037694) #27	ENSPPAG00000042900	PTPRZ1 (ENSPPAG00000042542) #28	AASS (ENSPPAG00000041360) #29	FEZF1 (ENSPPAG00000027222) #30	CADPS2 (ENSPPAG00000029988) #31	ENSPPAG00000027242 #33	TAS2R16 (ENSPPAG00000000642) #34	SLC13A1 (ENSPPAG00000040216) #35	IQUB (ENSPPAG00000036104) #36
Gorilla	MODERN SPECIES	20	TFEC (ENSGGOG00000009901) #8	TES (ENSGGOG00000016067) #9	CAV2 (ENSGGOG00000015074) #10	CAV1 (ENSGGOG00000027870) #11	MET (ENSGGOG00000012982) #12	CAPZA2 (ENSGGOG00000012158) #13	ENSGGOG00000027365	ST7 (ENSGGOG00000014410) #14	WNT2 (ENSGGOG00000009721) #16	ASZ1 (ENSGGOG00000002659) #18	CFTR (ENSGGOG00000004019) #17	CTTNBP2 (ENSGGOG00000014941) #19	LSM8 (ENSGGOG00000041883) #20	ANKRD7 (ENSGGOG00000025444) #21	ENSGGOG00000039138	KCND2 (ENSGGOG00000043715) #22	TSPAN12 (ENSGGOG00000034918) #23	ING3 (ENSGGOG00000004349) #24	CPED1 (ENSGGOG00000014223) #25	WNT16 (ENSGGOG00000016506) #26	FAM3C (ENSGGOG00000016446) #27	PTPRZ1 (ENSGGOG00000023127) #28	AASS (ENSGGOG00000027257) #29	CADPS2 (ENSGGOG00000034978) #31	ENSGGOG00000042593 #33	TAS2R16 (ENSGGOG00000010354) #34	SLC13A1 (ENSGGOG00000006358) #35	IQUB (ENSGGOG00000015921) #36	NDUFA5 (ENSGGOG00000022922) #37	ASB15 (ENSGGOG00000008574)	LMOD2 (ENSGGOG00000004684)
Orangutan	MODERN SPECIES	20	FOXP2 (ENSPPYG00000017926)	ENSPPYG00000038658 #7	TFEC (ENSPPYG00000031887) #8	TES (ENSPPYG00000017929) #9	CAV2 (ENSPPYG00000017930) #10	CAV1 (ENSPPYG00000017931) #11	MET (ENSPPYG00000017932) #12	CAPZA2 (ENSPPYG00000017933) #13	ST7 (ENSPPYG00000017934) #14	WNT2 (ENSPPYG00000017938) #16	ASZ1 (ENSPPYG00000017939) #18	CFTR (ENSPPYG00000017940) #17	CTTNBP2 (ENSPPYG00000017941) #19	LSM8 (ENSPPYG00000033700) #20	ANKRD7 (ENSPPYG00000018274) #21	KCND2 (ENSPPYG00000017943) #22	TSPAN12 (ENSPPYG00000017944) #23	ING3 (ENSPPYG00000017945) #24	CPED1 (ENSPPYG00000017946) #25	WNT16 (ENSPPYG00000017947) #26	FAM3C (ENSPPYG00000017948) #27	PTPRZ1 (ENSPPYG00000017949) #28	AASS (ENSPPYG00000017950) #29	FEZF1 (ENSPPYG00000017951) #30	CADPS2 (ENSPPYG00000017952) #31	ENSPPYG00000038373 #33	TAS2R16 (ENSPPYG00000017953) #34	SLC13A1 (ENSPPYG00000017954) #35	IQUB (ENSPPYG00000017955) #36	NDUFA5 (ENSPPYG00000017956) #37	ASB15 (ENSPPYG00000017957)
Gibbon	MODERN SPECIES	3	TFEC (ENSNLEG00000011480) #8	TES (ENSNLEG00000011494) #9	ENSNLEG00000011523 #10	CAV1 (ENSNLEG00000028023) #11	MET (ENSNLEG00000011530) #12	ENSNLEG00000011604 #13	ENSNLEG00000032514	ST7 (ENSNLEG00000011617) #14	ENSNLEG00000036065	WNT2 (ENSNLEG00000011635) #16	ASZ1 (ENSNLEG00000011649) #18	CFTR (ENSNLEG00000011680) #17	CTTNBP2 (ENSNLEG00000011717) #19	LSM8 (ENSNLEG00000011768) #20	ANKRD7 (ENSNLEG00000011773) #21	KCND2 (ENSNLEG00000035189) #22	TSPAN12 (ENSNLEG00000011786) #23	ING3 (ENSNLEG00000033180) #24	CPED1 (ENSNLEG00000011852) #25	WNT16 (ENSNLEG00000011905) #26	FAM3C (ENSNLEG00000011915) #27	PTPRZ1 (ENSNLEG00000011934) #28	AASS (ENSNLEG00000011978) #29	ENSNLEG00000012020 #30	CADPS2 (ENSNLEG00000012024) #31	ENSNLEG00000030675 #33	SLC13A1 (ENSNLEG00000012101) #35	IQUB (ENSNLEG00000012115) #36	NDUFA5 (ENSNLEG00000030214) #37	ASB15 (ENSNLEG00000012140)	LMOD2 (ENSNLEG00000012153)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37	ENSGT00940000157073
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37	ENSGT00940000157073	ENSGT00940000156567
Olive baboon	MODERN SPECIES	14	MDFIC (ENSPANG00000015175) #7	TFEC (ENSPANG00000022367) #8	TES (ENSPANG00000008934) #9	CAV2 (ENSPANG00000045499) #10	CAV1 (ENSPANG00000015174) #11	MET (ENSPANG00000024383) #12	CAPZA2 (ENSPANG00000024714) #13	ST7 (ENSPANG00000020407) #14	WNT2 (ENSPANG00000048086) #16	ASZ1 (ENSPANG00000016260) #18	CFTR (ENSPANG00000015987) #17	CTTNBP2 (ENSPANG00000007108) #19	ENSPANG00000039754 #20	ANKRD7 (ENSPANG00000016259) #21	ENSPANG00000045599	KCND2 (ENSPANG00000032534) #22	TSPAN12 (ENSPANG00000032965) #23	ING3 (ENSPANG00000018195) #24	CPED1 (ENSPANG00000016466) #25	WNT16 (ENSPANG00000025364) #26	FAM3C (ENSPANG00000006062) #27	ENSPANG00000044216	ENSPANG00000038082	ENSPANG00000045443	ENSPANG00000040908	PTPRZ1 (ENSPANG00000019044) #28	AASS (ENSPANG00000015986) #29	FEZF1 (ENSPANG00000013797) #30	ENSPANG00000030233 #33	CADPS2 (ENSPANG00000016310) #31	ENSPANG00000040239
Cercopithecinae_d	ANCESTRAL SPECIES	24	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37	ENSGT00940000157073	ENSGT00940000156567
Drill	MODERN SPECIES	1191														ENSMLEG00000025917	ENSMLEG00000043878	KCND2 (ENSMLEG00000031627) #22	TSPAN12 (ENSMLEG00000036367) #23	ING3 (ENSMLEG00000041000) #24	CPED1 (ENSMLEG00000034961) #25	WNT16 (ENSMLEG00000040367) #26	FAM3C (ENSMLEG00000040302) #27	PTPRZ1 (ENSMLEG00000032043) #28	AASS (ENSMLEG00000027988) #29	FEZF1 (ENSMLEG00000034221) #30	ENSMLEG00000040871 #33	CADPS2 (ENSMLEG00000043425) #31	SLC13A1 (ENSMLEG00000031772) #35	IQUB (ENSMLEG00000005762) #36	NDUFA5 (ENSMLEG00000034267) #37	ASB15 (ENSMLEG00000030309)	LMOD2 (ENSMLEG00000032109)
Sooty mangabey	MODERN SPECIES	283	TFEC (ENSCATG00000035757) #8	TES (ENSCATG00000018148) #9	CAV2 (ENSCATG00000031761) #10	CAV1 (ENSCATG00000030906) #11	MET (ENSCATG00000043244) #12	CAPZA2 (ENSCATG00000040117) #13	ST7 (ENSCATG00000044990) #14	ENSCATG00000034007	WNT2 (ENSCATG00000040118) #16	ASZ1 (ENSCATG00000034312) #18	CFTR (ENSCATG00000045275) #17	CTTNBP2 (ENSCATG00000043370) #19	LSM8 (ENSCATG00000045302) #20	ANKRD7 (ENSCATG00000005822) #21	ENSCATG00000014280	KCND2 (ENSCATG00000034255) #22	ENSCATG00000013909	TSPAN12 (ENSCATG00000032384) #23	ING3 (ENSCATG00000037947) #24	CPED1 (ENSCATG00000034268) #25	WNT16 (ENSCATG00000042098) #26	FAM3C (ENSCATG00000033663) #27	PTPRZ1 (ENSCATG00000042812) #28	AASS (ENSCATG00000024168) #29	FEZF1 (ENSCATG00000037503) #30	CADPS2 (ENSCATG00000017941) #31	ENSCATG00000041130 #33	SLC13A1 (ENSCATG00000044783) #35	IQUB (ENSCATG00000042016) #36	NDUFA5 (ENSCATG00000034799) #37	ASB15 (ENSCATG00000040240)
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT01030000234542.b.a.a.a.b.a.a.a.a	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT01010000223358	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37	ENSGT00940000157073
Pig-tailed macaque	MODERN SPECIES	95	TES (ENSMNEG00000039367) #9	CAV2 (ENSMNEG00000042279) #10	CAV1 (ENSMNEG00000044995) #11	MET (ENSMNEG00000038573) #12	CAPZA2 (ENSMNEG00000044342) #13	ENSMNEG00000042576	ST7 (ENSMNEG00000043047) #14	WNT2 (ENSMNEG00000035850) #16	ASZ1 (ENSMNEG00000042319) #18	CFTR (ENSMNEG00000042569) #17	CTTNBP2 (ENSMNEG00000039935) #19	ENSMNEG00000036764 #20	ANKRD7 (ENSMNEG00000029642) #21	ENSMNEG00000007384	ENSMNEG00000038870	KCND2 (ENSMNEG00000001242) #22	TSPAN12 (ENSMNEG00000034729) #23	ING3 (ENSMNEG00000038183) #24	CPED1 (ENSMNEG00000037782) #25	WNT16 (ENSMNEG00000037874) #26	FAM3C (ENSMNEG00000006860) #27	PTPRZ1 (ENSMNEG00000038637) #28	AASS (ENSMNEG00000031610) #29	FEZF1 (ENSMNEG00000017416) #30	ENSMNEG00000037281 #33	CADPS2 (ENSMNEG00000009908) #31	SLC13A1 (ENSMNEG00000035147) #35	IQUB (ENSMNEG00000032100) #36	NDUFA5 (ENSMNEG00000039718) #37	ASB15 (ENSMNEG00000041583)	LMOD2 (ENSMNEG00000031393)
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b.n.a #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.`b #20	ENSGT00940000164704 #21	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b #37	ENSGT00940000157073
Crab-eating macaque	MODERN SPECIES	13	TES (ENSMFAG00000005909) #9	ENSMFAG00000064881	CAV2 (ENSMFAG00000048330) #10	CAV1 (ENSMFAG00000046330) #11	MET (ENSMFAG00000028602) #12	CAPZA2 (ENSMFAG00000041237) #13	ST7 (ENSMFAG00000008568) #14	WNT2 (ENSMFAG00000044147) #16	ASZ1 (ENSMFAG00000033937) #18	CFTR (ENSMFAG00000000170) #17	ENSMFAG00000053020	CTTNBP2 (ENSMFAG00000039255) #19	ENSMFAG00000056701	LSM8 (ENSMFAG00000047892) #20	ANKRD7 (ENSMFAG00000039109) #21	KCND2 (ENSMFAG00000046158) #22	TSPAN12 (ENSMFAG00000002377) #23	ING3 (ENSMFAG00000044425) #24	CPED1 (ENSMFAG00000031588) #25	WNT16 (ENSMFAG00000031359) #26	FAM3C (ENSMFAG00000043181) #27	PTPRZ1 (ENSMFAG00000032576) #28	AASS (ENSMFAG00000038411) #29	FEZF1 (ENSMFAG00000034053) #30	CADPS2 (ENSMFAG00000040292) #31	ENSMFAG00000041426 #33	TAS2R16 (ENSMFAG00000064959) #34	SLC13A1 (ENSMFAG00000030904) #35	IQUB (ENSMFAG00000038536) #36	NDUFA5 (ENSMFAG00000047182) #37	ASB15 (ENSMFAG00000042819)
Rhesus	MODERN SPECIES	13	CAV2 (ENSMMUG00000061706) #10	CAV1 (ENSMMUG00000014122) #11	MET (ENSMMUG00000006779) #12	CAPZA2 (ENSMMUG00000006784) #13	ENSMMUG00000052234	ST7 (ENSMMUG00000021722) #14	WNT2 (ENSMMUG00000055123) #16	ENSMMUG00000064285	ASZ1 (ENSMMUG00000021726) #18	CFTR (ENSMMUG00000011269) #17	ENSMMUG00000060895	CTTNBP2 (ENSMMUG00000010297) #19	LSM8 (ENSMMUG00000060460) #20	ANKRD7 (ENSMMUG00000050524) #21	ENSMMUG00000052979	KCND2 (ENSMMUG00000023308) #22	TSPAN12 (ENSMMUG00000023310) #23	ING3 (ENSMMUG00000002434) #24	CPED1 (ENSMMUG00000002435) #25	WNT16 (ENSMMUG00000002439) #26	FAM3C (ENSMMUG00000002440) #27	PTPRZ1 (ENSMMUG00000012418) #28	AASS (ENSMMUG00000044304) #29	FEZF1 (ENSMMUG00000021542) #30	CADPS2 (ENSMMUG00000021543) #31	TAS2R16 (ENSMMUG00000064934) #34	SLC13A1 (ENSMMUG00000016770) #35	IQUB (ENSMMUG00000011536) #36	NDUFA5 (ENSMMUG00000017321) #37	ENSMMUG00000063547	ASB15 (ENSMMUG00000011541)
Vervet Monkey	MODERN SPECIES	13	MDFIC (ENSCSAG00000010952) #7	TFEC (ENSCSAG00000010942) #8	TES (ENSCSAG00000010935) #9	CAV2 (ENSCSAG00000010925) #10	CAV1 (ENSCSAG00000010920) #11	MET (ENSCSAG00000010912) #12	CAPZA2 (ENSCSAG00000010902) #13	ST7 (ENSCSAG00000010897) #14	ENSCSAG00000010890	WNT2 (ENSCSAG00000010887) #16	ASZ1 (ENSCSAG00000010871) #18	ENSCSAG00000010820 #17	CTTNBP2 (ENSCSAG00000010811) #19	ENSCSAG00000010802 #20	ANKRD7 (ENSCSAG00000010796) #21	KCND2 (ENSCSAG00000010780) #22	TSPAN12 (ENSCSAG00000010773) #23	ING3 (ENSCSAG00000010764) #24	CPED1 (ENSCSAG00000010728) #25	WNT16 (ENSCSAG00000010637) #26	FAM3C (ENSCSAG00000010624) #27	PTPRZ1 (ENSCSAG00000010610) #28	AASS (ENSCSAG00000010587) #29	FEZF1 (ENSCSAG00000010570) #30	CADPS2 (ENSCSAG00000010492) #31	RNF133 (ENSCSAG00000019132) #32	RNF148 (ENSCSAG00000019133) #33	TAS2R16 (ENSCSAG00000019134) #34	SLC13A1 (ENSCSAG00000010311) #35	IQUB (ENSCSAG00000010294) #36	NDUFA5 (ENSCSAG00000010289) #37
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.a.a #37	ENSGT00940000157073
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.a.a.b.b #37	ENSGT00940000157073
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000164704 #21	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.w.b.a.a.a #37	ENSGT00940000157073	ENSGT00940000156567
Bolivian squirrel monkey	MODERN SPECIES	44	TFEC (ENSSBOG00000024242) #8	TES (ENSSBOG00000031613) #9	CAV2 (ENSSBOG00000023114) #10	CAV1 (ENSSBOG00000029819) #11	MET (ENSSBOG00000018494) #12	ENSSBOG00000033214	CAPZA2 (ENSSBOG00000026180) #13	ST7 (ENSSBOG00000031136) #14	WNT2 (ENSSBOG00000026115) #16	ASZ1 (ENSSBOG00000014420) #18	CFTR (ENSSBOG00000034493) #17	CTTNBP2 (ENSSBOG00000032674) #19	LSM8 (ENSSBOG00000023223) #20	ANKRD7 (ENSSBOG00000021785) #21	ENSSBOG00000018270	KCND2 (ENSSBOG00000020186) #22	TSPAN12 (ENSSBOG00000018467) #23	ING3 (ENSSBOG00000032892) #24	CPED1 (ENSSBOG00000030761) #25	WNT16 (ENSSBOG00000028903) #26	FAM3C (ENSSBOG00000035343) #27	ENSSBOG00000023808	PTPRZ1 (ENSSBOG00000031204) #28	AASS (ENSSBOG00000023976) #29	FEZF1 (ENSSBOG00000024490) #30	ENSSBOG00000030358 #33	CADPS2 (ENSSBOG00000027008) #31	SLC13A1 (ENSSBOG00000023645) #35	IQUB (ENSSBOG00000035531) #36	ENSSBOG00000035298	ENSSBOG00000021818 #37
Marmoset	MODERN SPECIES	20											ENSCJAG00000087352	ENSCJAG00000073402	ENSCJAG00000082231	ENSCJAG00000085674	ENSCJAG00000073110	KCND2 (ENSCJAG00000022123) #22	TSPAN12 (ENSCJAG00000017120) #23	ENSCJAG00000046997	ING3 (ENSCJAG00000017145) #24	CPED1 (ENSCJAG00000017180) #25	WNT16 (ENSCJAG00000039822) #26	FAM3C (ENSCJAG00000017203) #27	ENSCJAG00000074556	PTPRZ1 (ENSCJAG00000017225) #28	AASS (ENSCJAG00000017282) #29	FEZF1 (ENSCJAG00000017326) #30	CADPS2 (ENSCJAG00000017339) #31	TAS2R16 (ENSCJAG00000021941) #34	SLC13A1 (ENSCJAG00000044845) #35	ENSCJAG00000080491	IQUB (ENSCJAG00000017429) #36
Mas night monkey	MODERN SPECIES	299															ENSANAG00000018557	KCND2 (ENSANAG00000019515) #22	TSPAN12 (ENSANAG00000026533) #23	ING3 (ENSANAG00000026555) #24	CPED1 (ENSANAG00000037145) #25	WNT16 (ENSANAG00000032514) #26	FAM3C (ENSANAG00000027693) #27	ENSANAG00000017679	PTPRZ1 (ENSANAG00000032819) #28	ENSANAG00000027824	AASS (ENSANAG00000037715) #29	FEZF1 (ENSANAG00000036057) #30	CADPS2 (ENSANAG00000033191) #31	ENSANAG00000032957 #33	SLC13A1 (ENSANAG00000023737) #35	IQUB (ENSANAG00000031863) #36	ENSANAG00000033278 #37
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.bb #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.u.a #37	ENSGT00940000157073
Lemuriformes_a	ANCESTRAL SPECIES	103	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.bb #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.u.a #37	ENSGT00940000157073
Coquerels sifaka	MODERN SPECIES	544	MDFIC (ENSPCOG00000002097) #7	TFEC (ENSPCOG00000026787) #8	ENSPCOG00000014908	TES (ENSPCOG00000009261) #9	CAV2 (ENSPCOG00000025837) #10	CAV1 (ENSPCOG00000024742) #11	MET (ENSPCOG00000022991) #12	CAPZA2 (ENSPCOG00000021478) #13	ST7 (ENSPCOG00000008893) #14	WNT2 (ENSPCOG00000027908) #16	ASZ1 (ENSPCOG00000018076) #18	CFTR (ENSPCOG00000014929) #17	CTTNBP2 (ENSPCOG00000000372) #19	ENSPCOG00000003309 #20	ENSPCOG00000017095	KCND2 (ENSPCOG00000015891) #22	TSPAN12 (ENSPCOG00000021720) #23	ENSPCOG00000028787	CPED1 (ENSPCOG00000016564) #25	WNT16 (ENSPCOG00000015467) #26	FAM3C (ENSPCOG00000019661) #27	ENSPCOG00000025054	PTPRZ1 (ENSPCOG00000025981) #28	AASS (ENSPCOG00000027625) #29	FEZF1 (ENSPCOG00000021658) #30	ENSPCOG00000007052 #33	CADPS2 (ENSPCOG00000028725) #31	ENSPCOG00000013869 #35	IQUB (ENSPCOG00000016916) #36	ENSPCOG00000016990 #37	ASB15 (ENSPCOG00000011820)
Greater bamboo lemur	MODERN SPECIES	654					ENSPSMG00000015643	CAPZA2 (ENSPSMG00000015591) #13	ST7 (ENSPSMG00000015388) #14	WNT2 (ENSPSMG00000015124) #16	ASZ1 (ENSPSMG00000015104) #18	CFTR (ENSPSMG00000015055) #17	ENSPSMG00000014944	CTTNBP2 (ENSPSMG00000014929) #19	ENSPSMG00000014842 #20	ENSPSMG00000014837	ENSPSMG00000014820	KCND2 (ENSPSMG00000014803) #22	TSPAN12 (ENSPSMG00000014789) #23	ING3 (ENSPSMG00000014755) #24	CPED1 (ENSPSMG00000014697) #25	WNT16 (ENSPSMG00000014604) #26	FAM3C (ENSPSMG00000014578) #27	PTPRZ1 (ENSPSMG00000014542) #28	AASS (ENSPSMG00000014416) #29	FEZF1 (ENSPSMG00000014374) #30	CADPS2 (ENSPSMG00000014152) #31	TAS2R16 (ENSPSMG00000013871) #34	SLC13A1 (ENSPSMG00000013858) #35	IQUB (ENSPSMG00000013811) #36	ENSPSMG00000013790 #37	ASB15 (ENSPSMG00000013726)	ENSPSMG00000013679
Mouse lemur	MODERN SPECIES	2	ENSMICG00000003662 #7	TFEC (ENSMICG00000006995) #8	TES (ENSMICG00000007002) #9	CAV2 (ENSMICG00000045272) #10	CAV1 (ENSMICG00000026847) #11	MET (ENSMICG00000000697) #12	CAPZA2 (ENSMICG00000032607) #13	ST7 (ENSMICG00000005741) #14	WNT2 (ENSMICG00000005749) #16	ASZ1 (ENSMICG00000005752) #18	CFTR (ENSMICG00000046039) #17	CTTNBP2 (ENSMICG00000005787) #19	LSM8 (ENSMICG00000042730) #20	ENSMICG00000036567	ENSMICG00000048064	KCND2 (ENSMICG00000043428) #22	TSPAN12 (ENSMICG00000000958) #23	ENSMICG00000013934 #24	CPED1 (ENSMICG00000036835) #25	WNT16 (ENSMICG00000013963) #26	FAM3C (ENSMICG00000034347) #27	ENSMICG00000026612	ENSMICG00000030043	PTPRZ1 (ENSMICG00000000608) #28	AASS (ENSMICG00000000617) #29	FEZF1 (ENSMICG00000033586) #30	ENSMICG00000034262 #33	CADPS2 (ENSMICG00000001954) #31	SLC13A1 (ENSMICG00000030478) #35	IQUB (ENSMICG00000008091) #36	NDUFA5 (ENSMICG00000032578) #37
Bushbaby	MODERN SPECIES	152	TFEC (ENSOGAG00000010066) #8	TES (ENSOGAG00000010070) #9	CAV2 (ENSOGAG00000025779) #10	CAV1 (ENSOGAG00000014265) #11	MET (ENSOGAG00000003961) #12	CAPZA2 (ENSOGAG00000012540) #13	ST7 (ENSOGAG00000013563) #14	WNT2 (ENSOGAG00000013574) #16	ASZ1 (ENSOGAG00000003040) #18	CFTR (ENSOGAG00000001756) #17	CTTNBP2 (ENSOGAG00000001760) #19	LSM8 (ENSOGAG00000013377) #20	ENSOGAG00000006943	ENSOGAG00000025182	ENSOGAG00000027459	KCND2 (ENSOGAG00000031295) #22	TSPAN12 (ENSOGAG00000004209) #23	ING3 (ENSOGAG00000004212) #24	CPED1 (ENSOGAG00000004213) #25	WNT16 (ENSOGAG00000004218) #26	FAM3C (ENSOGAG00000004219) #27	PTPRZ1 (ENSOGAG00000016074) #28	AASS (ENSOGAG00000016086) #29	FEZF1 (ENSOGAG00000002663) #30	CADPS2 (ENSOGAG00000002665) #31	RNF133 (ENSOGAG00000002671) #32	RNF148 (ENSOGAG00000032042) #33	SLC13A1 (ENSOGAG00000011883) #35	IQUB (ENSOGAG00000001073) #36	NDUFA5 (ENSOGAG00000033137) #37	ASB15 (ENSOGAG00000007610)
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Tree shrew	MODERN SPECIES	4508																KCND2 (ENSTBEG00000012839) #22	TSPAN12 (ENSTBEG00000013114) #23
Glires	ANCESTRAL SPECIES	18	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Lagomorpha	ANCESTRAL SPECIES	24	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Rabbit	MODERN SPECIES	18	TES (ENSOCUG00000008491) #9	CAV2 (ENSOCUG00000014515) #10	CAV1 (ENSOCUG00000014520) #11	MET (ENSOCUG00000013060) #12	ST7 (ENSOCUG00000016156) #14	WNT2 (ENSOCUG00000016173) #16	ASZ1 (ENSOCUG00000015962) #18	CFTR (ENSOCUG00000010733) #17	ENSOCUG00000038182	CTTNBP2 (ENSOCUG00000001386) #19	LSM8 (ENSOCUG00000017359) #20	ENSOCUG00000021922	ENSOCUG00000032257	ENSOCUG00000023965	ENSOCUG00000037642	KCND2 (ENSOCUG00000004149) #22	TSPAN12 (ENSOCUG00000001875) #23	ENSOCUG00000034467	ING3 (ENSOCUG00000001881) #24	CPED1 (ENSOCUG00000005778) #25	WNT16 (ENSOCUG00000014744) #26	FAM3C (ENSOCUG00000003351) #27	PTPRZ1 (ENSOCUG00000013209) #28	AASS (ENSOCUG00000013237) #29	FEZF1 (ENSOCUG00000021285) #30	ENSOCUG00000039223	ENSOCUG00000033009	CADPS2 (ENSOCUG00000007425) #31	TAS2R16 (ENSOCUG00000017889) #34	SLC13A1 (ENSOCUG00000001022) #35	ENSOCUG00000034895
Pika	MODERN SPECIES	4003																KCND2 (ENSOPRG00000016904) #22	TSPAN12 (ENSOPRG00000016911) #23	ING3 (ENSOPRG00000016917) #24	CPED1 (ENSOPRG00000016928) #25	WNT16 (ENSOPRG00000016946) #26	FAM3C (ENSOPRG00000016951) #27
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Chinese hamster chok1gshd	MODERN SPECIES	54	Tfec (ENSCGRG00001017234) #8	ENSCGRG00001023123 #9	Cav2 (ENSCGRG00001020610) #10	Cav1 (ENSCGRG00001019680) #11	Met (ENSCGRG00001011551) #12	Capza2 (ENSCGRG00001022803) #13	St7 (ENSCGRG00001018752) #14	Wnt2 (ENSCGRG00001005484) #16	Asz1 (ENSCGRG00001020481) #18	Cftr (ENSCGRG00001006106) #17	Cttnbp2 (ENSCGRG00001010648) #19	Lsm8 (ENSCGRG00001000450) #20	Ankrd7 (ENSCGRG00001022051)	ENSCGRG00001021813	ENSCGRG00001021329	Kcnd2 (ENSCGRG00001013210) #22	Tspan12 (ENSCGRG00001012145) #23	Ing3 (ENSCGRG00001012381) #24	Cped1 (ENSCGRG00001009705) #25	Wnt16 (ENSCGRG00001022981) #26	Fam3c (ENSCGRG00001019403) #27	Ptprz1 (ENSCGRG00001020740) #28	Aass (ENSCGRG00001014114) #29	Fezf1 (ENSCGRG00001018145) #30	Cadps2 (ENSCGRG00001009309) #31	Rnf133 (ENSCGRG00001011407) #32	ENSCGRG00001014291	ENSCGRG00001004003	Tas2r118 (ENSCGRG00001006107) #34	Slc13a1 (ENSCGRG00001009482) #35	Iqub (ENSCGRG00001019481) #36
Golden Hamster	MODERN SPECIES	696															Lsm8 (ENSMAUG00000020287) #20	Kcnd2 (ENSMAUG00000014403) #22	Tspan12 (ENSMAUG00000013716) #23	Ing3 (ENSMAUG00000001366) #24	Cped1 (ENSMAUG00000012676) #25	Wnt16 (ENSMAUG00000015173) #26	Fam3c (ENSMAUG00000018611) #27	ENSMAUG00000002182	Ptprz1 (ENSMAUG00000013366) #28	Aass (ENSMAUG00000021228) #29	Fezf1 (ENSMAUG00000014725) #30	Cadps2 (ENSMAUG00000014481) #31	Rnf148 (ENSMAUG00000002390) #33	Slc13a1 (ENSMAUG00000021116) #35	Iqub (ENSMAUG00000010910) #36	ENSMAUG00000008323 #37	Asb15 (ENSMAUG00000019338)
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Prairie vole	MODERN SPECIES	350	ENSMOCG00000018404	ENSMOCG00000002194	Tfec (ENSMOCG00000021582) #8	ENSMOCG00000011236 #9	Cav2 (ENSMOCG00000015582) #10	Cav1 (ENSMOCG00000019224) #11	Met (ENSMOCG00000006344) #12	Capza2 (ENSMOCG00000017352) #13	St7 (ENSMOCG00000016312) #14	Wnt2 (ENSMOCG00000022808) #16	Asz1 (ENSMOCG00000001767) #18	Cftr (ENSMOCG00000007371) #17	Cttnbp2 (ENSMOCG00000010478) #19	ENSMOCG00000018450	Lsm8 (ENSMOCG00000001688) #20	Kcnd2 (ENSMOCG00000022409) #22	Tspan12 (ENSMOCG00000018964) #23	Ing3 (ENSMOCG00000015011) #24	Cped1 (ENSMOCG00000013716) #25	Wnt16 (ENSMOCG00000021643) #26	Fam3c (ENSMOCG00000005307) #27	Ptprz1 (ENSMOCG00000007634) #28	Aass (ENSMOCG00000015947) #29	Usp26 (ENSMOCG00000011350)	Hs6st2 (ENSMOCG00000014810)	Mbnl3 (ENSMOCG00000011470)	Rap2c (ENSMOCG00000007198)	Frmd7 (ENSMOCG00000017123)	Stk26 (ENSMOCG00000012674)
Northern American deer mouse	MODERN SPECIES	16	Cav2 (ENSPEMG00000024329) #10	Cav1 (ENSPEMG00000024904) #11	Met (ENSPEMG00000021204) #12	Capza2 (ENSPEMG00000023836) #13	St7 (ENSPEMG00000006510) #14	Wnt2 (ENSPEMG00000024059) #16	Asz1 (ENSPEMG00000005011) #18	Cftr (ENSPEMG00000008730) #17	Cttnbp2 (ENSPEMG00000006365) #19	Lsm8 (ENSPEMG00000009153) #20	Ankrd7 (ENSPEMG00000015569)	ENSPEMG00000026145	ENSPEMG00000025502	ENSPEMG00000025522	ENSPEMG00000027299	Kcnd2 (ENSPEMG00000012871) #22	Tspan12 (ENSPEMG00000016235) #23	Ing3 (ENSPEMG00000021561) #24	Cped1 (ENSPEMG00000024278) #25	Wnt16 (ENSPEMG00000024607) #26	ENSPEMG00000022248 #27	Ptprz1 (ENSPEMG00000014955) #28	Aass (ENSPEMG00000008591) #29	Fezf1 (ENSPEMG00000010541) #30	Cadps2 (ENSPEMG00000018807) #31	Rnf133 (ENSPEMG00000016095) #32	Tas2r118 (ENSPEMG00000016153) #34	Slc13a1 (ENSPEMG00000018404) #35	Iqub (ENSPEMG00000016127) #36	Ndufa5 (ENSPEMG00000009370) #37	Asb15 (ENSPEMG00000019026)
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.c #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Mus	ANCESTRAL SPECIES	20	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.c #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.c #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.i #37
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.c #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.i #37
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.c #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.i #37
spretus	MODERN SPECIES	15	Foxp2 (MGP_SPRETEiJ_G0029112)	MGP_SPRETEiJ_G0029113 #7	Tfec (MGP_SPRETEiJ_G0029114) #8	Tes (MGP_SPRETEiJ_G0029115) #9	Cav2 (MGP_SPRETEiJ_G0029116) #10	Cav1 (MGP_SPRETEiJ_G0029117) #11	Met (MGP_SPRETEiJ_G0029118) #12	Capza2 (MGP_SPRETEiJ_G0029119) #13	St7 (MGP_SPRETEiJ_G0029120) #14	Wnt2 (MGP_SPRETEiJ_G0029121) #16	Asz1 (MGP_SPRETEiJ_G0029122) #18	Cftr (MGP_SPRETEiJ_G0029123) #17	Cttnbp2 (MGP_SPRETEiJ_G0029124) #19	Lsm8 (MGP_SPRETEiJ_G0029125) #20	Ankrd7 (MGP_SPRETEiJ_G0029126)	Kcnd2 (MGP_SPRETEiJ_G0029127) #22	Tspan12 (MGP_SPRETEiJ_G0029128) #23	Ing3 (MGP_SPRETEiJ_G0029129) #24	Cped1 (MGP_SPRETEiJ_G0029130) #25	Wnt16 (MGP_SPRETEiJ_G0029131) #26	Fam3c (MGP_SPRETEiJ_G0029132) #27	Ptprz1 (MGP_SPRETEiJ_G0029133) #28	Aass (MGP_SPRETEiJ_G0029134) #29	Fezf1 (MGP_SPRETEiJ_G0029135) #30	Cadps2 (MGP_SPRETEiJ_G0029136) #31	Rnf133 (MGP_SPRETEiJ_G0029137) #32	Rnf148 (MGP_SPRETEiJ_G0029138) #33	Tas2r118 (MGP_SPRETEiJ_G0029139) #34	Slc13a1 (MGP_SPRETEiJ_G0029140) #35	Iqub (MGP_SPRETEiJ_G0029141) #36	Ndufa5 (MGP_SPRETEiJ_G0029142) #37
Steppe mouse	MODERN SPECIES	3300								Cttnbp2 (ENSMSIG00000019587) #19	ENSMSIG00000019569	ENSMSIG00000019550 #20	Ankrd7 (ENSMSIG00000019528)	ENSMSIG00000019517	ENSMSIG00000019508	ENSMSIG00000019486	ENSMSIG00000019470	Kcnd2 (ENSMSIG00000019456) #22	Tspan12 (ENSMSIG00000019433) #23	Ing3 (ENSMSIG00000019386) #24	Cped1 (ENSMSIG00000019364) #25	Wnt16 (ENSMSIG00000019307) #26	Fam3c (ENSMSIG00000019205) #27	ENSMSIG00000019192	Ptprz1 (ENSMSIG00000018983) #28
Mouse	MODERN SPECIES	15	Foxp2 (ENSMUSG00000029563)	Mdfic (ENSMUSG00000041390) #7	Tfec (ENSMUSG00000029553) #8	Tes (ENSMUSG00000029552) #9	Cav2 (ENSMUSG00000000058) #10	Cav1 (ENSMUSG00000007655) #11	Met (ENSMUSG00000009376) #12	Capza2 (ENSMUSG00000015733) #13	St7 (ENSMUSG00000029534) #14	Wnt2 (ENSMUSG00000010797) #16	Asz1 (ENSMUSG00000010796) #18	Cftr (ENSMUSG00000041301) #17	Cttnbp2 (ENSMUSG00000000416) #19	Lsm8 (ENSMUSG00000044155) #20	Ankrd7 (ENSMUSG00000029517)	Kcnd2 (ENSMUSG00000060882) #22	Tspan12 (ENSMUSG00000029669) #23	Ing3 (ENSMUSG00000029670) #24	Cped1 (ENSMUSG00000062980) #25	Wnt16 (ENSMUSG00000029671) #26	Fam3c (ENSMUSG00000029672) #27	Ptprz1 (ENSMUSG00000068748) #28	Aass (ENSMUSG00000029695) #29	Fezf1 (ENSMUSG00000029697) #30	Cadps2 (ENSMUSG00000017978) #31	Rnf133 (ENSMUSG00000051956) #32	Rnf148 (ENSMUSG00000078179) #33	Tas2r118 (ENSMUSG00000043865) #34	Slc13a1 (ENSMUSG00000029700) #35	Iqub (ENSMUSG00000046192) #36	Ndufa5 (ENSMUSG00000023089) #37
Ryukyu mouse	MODERN SPECIES	15	Foxp2 (MGP_CAROLIEiJ_G0028112)	MGP_CAROLIEiJ_G0028113 #7	Tfec (MGP_CAROLIEiJ_G0028114) #8	Tes (MGP_CAROLIEiJ_G0028115) #9	Cav2 (MGP_CAROLIEiJ_G0028116) #10	Cav1 (MGP_CAROLIEiJ_G0028117) #11	Met (MGP_CAROLIEiJ_G0028118) #12	Capza2 (MGP_CAROLIEiJ_G0028119) #13	St7 (MGP_CAROLIEiJ_G0028120) #14	Wnt2 (MGP_CAROLIEiJ_G0028121) #16	Asz1 (MGP_CAROLIEiJ_G0028122) #18	Cftr (MGP_CAROLIEiJ_G0028123) #17	Cttnbp2 (MGP_CAROLIEiJ_G0028124) #19	Lsm8 (MGP_CAROLIEiJ_G0028125) #20	Ankrd7 (MGP_CAROLIEiJ_G0028126)	Kcnd2 (MGP_CAROLIEiJ_G0028127) #22	Tspan12 (MGP_CAROLIEiJ_G0028128) #23	Ing3 (MGP_CAROLIEiJ_G0028129) #24	Cped1 (MGP_CAROLIEiJ_G0028130) #25	Wnt16 (MGP_CAROLIEiJ_G0028131) #26	Fam3c (MGP_CAROLIEiJ_G0028132) #27	Ptprz1 (MGP_CAROLIEiJ_G0028133) #28	Aass (MGP_CAROLIEiJ_G0028134) #29	Fezf1 (MGP_CAROLIEiJ_G0028135) #30	Cadps2 (MGP_CAROLIEiJ_G0028136) #31	Rnf133 (MGP_CAROLIEiJ_G0028137) #32	Rnf148 (MGP_CAROLIEiJ_G0028138) #33	Tas2r118 (MGP_CAROLIEiJ_G0028139) #34	Slc13a1 (MGP_CAROLIEiJ_G0028140) #35	Iqub (MGP_CAROLIEiJ_G0028141) #36	Ndufa5 (MGP_CAROLIEiJ_G0028142) #37
Shrew mouse	MODERN SPECIES	11	Foxp2 (MGP_PahariEiJ_G0021868)	MGP_PahariEiJ_G0021869 #7	Tfec (MGP_PahariEiJ_G0021870) #8	Tes (MGP_PahariEiJ_G0021871) #9	Cav2 (MGP_PahariEiJ_G0021872) #10	Cav1 (MGP_PahariEiJ_G0021873) #11	Met (MGP_PahariEiJ_G0021874) #12	Capza2 (MGP_PahariEiJ_G0021875) #13	St7 (MGP_PahariEiJ_G0021876) #14	Wnt2 (MGP_PahariEiJ_G0021877) #16	Asz1 (MGP_PahariEiJ_G0021878) #18	Cftr (MGP_PahariEiJ_G0021879) #17	Cttnbp2 (MGP_PahariEiJ_G0021880) #19	MGP_PahariEiJ_G0021881 #20	Ankrd7 (MGP_PahariEiJ_G0021882)	Kcnd2 (MGP_PahariEiJ_G0021883) #22	Tspan12 (MGP_PahariEiJ_G0021884) #23	Ing3 (MGP_PahariEiJ_G0021885) #24	Cped1 (MGP_PahariEiJ_G0021886) #25	Wnt16 (MGP_PahariEiJ_G0021887) #26	Fam3c (MGP_PahariEiJ_G0021888) #27	Ptprz1 (MGP_PahariEiJ_G0021889) #28	Aass (MGP_PahariEiJ_G0021890) #29	Fezf1 (MGP_PahariEiJ_G0021891) #30	Cadps2 (MGP_PahariEiJ_G0021892) #31	Rnf133 (MGP_PahariEiJ_G0021893) #32	Rnf148 (MGP_PahariEiJ_G0021894) #33	Tas2r118 (MGP_PahariEiJ_G0021895) #34	Slc13a1 (MGP_PahariEiJ_G0021896) #35	Iqub (MGP_PahariEiJ_G0021897) #36	Ndufa5 (MGP_PahariEiJ_G0021898) #37
Rat	MODERN SPECIES	14	Tes (ENSRNOG00000051952) #9	Cav2 (ENSRNOG00000057713) #10	Cav1 (ENSRNOG00000056836) #11	Met (ENSRNOG00000052745) #12	Capza2 (ENSRNOG00000056207) #13	ST7 (ENSRNOG00000056243) #14	AC123138.1 (ENSRNOG00000012822)	Wnt2 (ENSRNOG00000051905) #16	Asz1 (ENSRNOG00000060343) #18	ENSRNOG00000067965	Cftr (ENSRNOG00000055103) #17	Cttnbp2 (ENSRNOG00000061845) #19	Lsm8 (ENSRNOG00000070946) #20	Ankrd7 (ENSRNOG00000055481)	LOC685171 (ENSRNOG00000058543)	Kcnd2 (ENSRNOG00000067416) #22	Tspan12 (ENSRNOG00000059016) #23	ENSRNOG00000064820	Ing3 (ENSRNOG00000005496) #24	Cped1 (ENSRNOG00000021840) #25	Wnt16 (ENSRNOG00000005781) #26	Fam3c (ENSRNOG00000060349) #27	ENSRNOG00000063098	Ptprz1 (ENSRNOG00000006030) #28	Aass (ENSRNOG00000039494) #29	AABR07025928.1 (ENSRNOG00000056660)	ENSRNOG00000068406	Fezf1 (ENSRNOG00000007608) #30	Cadps2 (ENSRNOG00000007636) #31	Rnf133 (ENSRNOG00000065130) #32	Tas2r118 (ENSRNOG00000021799) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	621																Kcnd2 (ENSNGAG00000011359) #22	Tspan12 (ENSNGAG00000004886) #23	Ing3 (ENSNGAG00000004143) #24	Cped1 (ENSNGAG00000020573) #25	Wnt16 (ENSNGAG00000016047) #26	Fam3c (ENSNGAG00000015577) #27	Ptprz1 (ENSNGAG00000013149) #28	Aass (ENSNGAG00000016795) #29	Fezf1 (ENSNGAG00000014433) #30	Cadps2 (ENSNGAG00000015257) #31	Tas2r118 (ENSNGAG00000017996) #34	Slc13a1 (ENSNGAG00000005881) #35
Lesser Egyptian jerboa	MODERN SPECIES	67	Cav2 (ENSJJAG00000020789) #10	Cav1 (ENSJJAG00000021423) #11	ENSJJAG00000000187	Met (ENSJJAG00000012125) #12	ENSJJAG00000021128 #13	St7 (ENSJJAG00000004440) #14	Wnt2 (ENSJJAG00000017203) #16	Asz1 (ENSJJAG00000022495) #18	ENSJJAG00000022583 #17	Cttnbp2 (ENSJJAG00000013148) #19	ENSJJAG00000003447	Lsm8 (ENSJJAG00000009031) #20	ENSJJAG00000011628	ENSJJAG00000016745	ENSJJAG00000019540	Kcnd2 (ENSJJAG00000000160) #22	Tspan12 (ENSJJAG00000006214) #23	Ing3 (ENSJJAG00000007662) #24	Cped1 (ENSJJAG00000023207) #25	ENSJJAG00000013375	Wnt16 (ENSJJAG00000016207) #26	Fam3c (ENSJJAG00000019764) #27	ENSJJAG00000020378	ENSJJAG00000018547	Ptprz1 (ENSJJAG00000014324) #28	Aass (ENSJJAG00000003015) #29	Fezf1 (ENSJJAG00000014803) #30	Cadps2 (ENSJJAG00000016732) #31	Rnf133 (ENSJJAG00000005201) #32	Rnf148 (ENSJJAG00000020410) #33	ENSJJAG00000021889
Kangaroo rat	MODERN SPECIES	367	ENSDORG00000029823	ENSDORG00000016725 #9	Cav2 (ENSDORG00000023298) #10	Cav1 (ENSDORG00000026258) #11	Met (ENSDORG00000002178) #12	Capza2 (ENSDORG00000016226) #13	St7 (ENSDORG00000016230) #14	Wnt2 (ENSDORG00000016233) #16	Asz1 (ENSDORG00000007590) #18	Cftr (ENSDORG00000005421) #17	ENSDORG00000023544	Cttnbp2 (ENSDORG00000005026) #19	Lsm8 (ENSDORG00000027868) #20	Ankrd7 (ENSDORG00000002700)	ENSDORG00000028967	Kcnd2 (ENSDORG00000003100) #22	Tspan12 (ENSDORG00000003102) #23	Ing3 (ENSDORG00000014497) #24	Cped1 (ENSDORG00000014498) #25	Wnt16 (ENSDORG00000014501) #26	Fam3c (ENSDORG00000014503) #27	Ptprz1 (ENSDORG00000010123) #28	Aass (ENSDORG00000010129) #29	Fezf1 (ENSDORG00000027250) #30	Rnf133 (ENSDORG00000025983) #32	Cadps2 (ENSDORG00000016250) #31	Slc13a1 (ENSDORG00000000630) #35	ENSDORG00000030217	Iqub (ENSDORG00000014986) #36	Ndufa5 (ENSDORG00000027239) #37	Asb15 (ENSDORG00000011790)
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00940000182222	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.y #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Marmotini_b	ANCESTRAL SPECIES	175															ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Squirrel	MODERN SPECIES	205																KCND2 (ENSSTOG00000030945) #22	TSPAN12 (ENSSTOG00000000209) #23	ING3 (ENSSTOG00000004039) #24	CPED1 (ENSSTOG00000006527) #25	WNT16 (ENSSTOG00000006593) #26	FAM3C (ENSSTOG00000006608) #27	PTPRZ1 (ENSSTOG00000025909) #28	AASS (ENSSTOG00000015486) #29	FEZF1 (ENSSTOG00000022201) #30	CADPS2 (ENSSTOG00000008633) #31	SLC13A1 (ENSSTOG00000012086) #35	IQUB (ENSSTOG00000008080) #36	NDUFA5 (ENSSTOG00000027404) #37	ASB15 (ENSSTOG00000001877)	LMOD2 (ENSSTOG00000026603)	WASL (ENSSTOG00000001892)
Arctic ground squirrel	MODERN SPECIES	62															ENSUPAG00010015665	KCND2 (ENSUPAG00010015672) #22	TSPAN12 (ENSUPAG00010015684) #23	ING3 (ENSUPAG00010015709) #24	CPED1 (ENSUPAG00010015735) #25	WNT16 (ENSUPAG00010015755) #26	FAM3C (ENSUPAG00010015781) #27	PTPRZ1 (ENSUPAG00010015800) #28	AASS (ENSUPAG00010015951) #29	FEZF1 (ENSUPAG00010015995) #30	CADPS2 (ENSUPAG00010016014) #31	TAS2R16 (ENSUPAG00010017195) #34	SLC13A1 (ENSUPAG00010017198) #35	IQUB (ENSUPAG00010017217) #36	ENSUPAG00010017244 #37	ASB15 (ENSUPAG00010017255)	LMOD2 (ENSUPAG00010017292)
Alpin marmot	MODERN SPECIES	22	ENSMMMG00000014306	TFEC (ENSMMMG00000014310) #8	TES (ENSMMMG00000014318) #9	ENSMMMG00000014340	CAV1 (ENSMMMG00000014351) #11	MET (ENSMMMG00000014368) #12	CAPZA2 (ENSMMMG00000014429) #13	ST7 (ENSMMMG00000014467) #14	WNT2 (ENSMMMG00000014617) #16	ASZ1 (ENSMMMG00000014625) #18	ENSMMMG00000014643 #17	CTTNBP2 (ENSMMMG00000014680) #19	ENSMMMG00000014734	ENSMMMG00000014735	ENSMMMG00000014759	KCND2 (ENSMMMG00000014763) #22	TSPAN12 (ENSMMMG00000014770) #23	ING3 (ENSMMMG00000014787) #24	CPED1 (ENSMMMG00000014806) #25	WNT16 (ENSMMMG00000014850) #26	FAM3C (ENSMMMG00000014872) #27	PTPRZ1 (ENSMMMG00000014884) #28	AASS (ENSMMMG00000014988) #29	FEZF1 (ENSMMMG00000015014) #30	CADPS2 (ENSMMMG00000015032) #31	RNF148 (ENSMMMG00000015069) #33	TAS2R16 (ENSMMMG00000015086) #34	SLC13A1 (ENSMMMG00000015090) #35	IQUB (ENSMMMG00000015110) #36	NDUFA5 (ENSMMMG00000015124) #37	ASB15 (ENSMMMG00000015148)
Eurasian red squirrel	MODERN SPECIES	17	TES (ENSSVLG00005018372) #9	ENSSVLG00005018352	CAV2 (ENSSVLG00005018312) #10	CAV1 (ENSSVLG00005018241) #11	ENSSVLG00005018138	ENSSVLG00005018122	CAPZA2 (ENSSVLG00005017995) #13	ST7 (ENSSVLG00005015943) #14	WNT2 (ENSSVLG00005015494) #16	ENSSVLG00005015363 #18	CFTR (ENSSVLG00005014470) #17	CTTNBP2 (ENSSVLG00005014155) #19	LSM8 (ENSSVLG00005014022) #20	ENSSVLG00005013879	ENSSVLG00005013739	KCND2 (ENSSVLG00005013713) #22	TSPAN12 (ENSSVLG00005013639) #23	ING3 (ENSSVLG00005013543) #24	CPED1 (ENSSVLG00005013406) #25	WNT16 (ENSSVLG00005013269) #26	FAM3C (ENSSVLG00005013224) #27	ENSSVLG00005013132	PTPRZ1 (ENSSVLG00005010362) #28	AASS (ENSSVLG00005009890) #29	FEZF1 (ENSSVLG00005009793) #30	CADPS2 (ENSSVLG00005008973) #31	TAS2R16 (ENSSVLG00005008847) #34	SLC13A1 (ENSSVLG00005008725) #35	ENSSVLG00005008606 #36	ENSSVLG00005008480 #37	ASB15 (ENSSVLG00005008414)
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00840000131243	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619.l #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Naked mole-rat female	MODERN SPECIES	5	MET (ENSHGLG00000002836) #12	ENSHGLG00000031932	ENSHGLG00000042742 #13	ENSHGLG00000002784 #13	ST7 (ENSHGLG00000002466) #14	ENSHGLG00000003310	WNT2 (ENSHGLG00000036817) #16	ASZ1 (ENSHGLG00000002226) #18	ENSHGLG00000041588	ENSHGLG00000002151 #17	ENSHGLG00000037153	NAA38 (ENSHGLG00000043821) #20	ENSHGLG00000038825	ENSHGLG00000006757	ENSHGLG00000010919	ENSHGLG00000010555 #22	TSPAN12 (ENSHGLG00000009931) #23	ING3 (ENSHGLG00000008632) #24	CPED1 (ENSHGLG00000007984) #25	WNT16 (ENSHGLG00000040512) #26	ENSHGLG00000019063 #27	PTPRZ1 (ENSHGLG00000007675) #28	AASS (ENSHGLG00000006193) #29	FEZF1 (ENSHGLG00000006102) #30	CADPS2 (ENSHGLG00000017751) #31	RNF148 (ENSHGLG00000033439) #33	TAS2R16 (ENSHGLG00000044095) #34	ENSHGLG00000048989	SLC13A1 (ENSHGLG00000019390) #35	IQUB (ENSHGLG00000007200) #36	NDUFA5 (ENSHGLG00000042692) #37
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00940000157682.B	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00840000131243	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619.l #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Hystricomorpha_b	ANCESTRAL SPECIES	85																ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619.l #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Degu	MODERN SPECIES	211														ENSODEG00000019823	ENSODEG00000010823	KCND2 (ENSODEG00000011671) #22	TSPAN12 (ENSODEG00000012176) #23	ING3 (ENSODEG00000012244) #24	CPED1 (ENSODEG00000011686) #25	WNT16 (ENSODEG00000010930) #26	FAM3C (ENSODEG00000010369) #27	ENSODEG00000013194	ENSODEG00000011725	PTPRZ1 (ENSODEG00000015174) #28	AASS (ENSODEG00000011908) #29	FEZF1 (ENSODEG00000011539) #30	CADPS2 (ENSODEG00000011793) #31	RNF133 (ENSODEG00000011427) #32	ENSODEG00000011569	SLC13A1 (ENSODEG00000012195) #35	IQUB (ENSODEG00000012185) #36
Long-tailed chinchilla	MODERN SPECIES	186															ENSCLAG00000004090	KCND2 (ENSCLAG00000004173) #22	TSPAN12 (ENSCLAG00000004712) #23	ING3 (ENSCLAG00000004878) #24	CPED1 (ENSCLAG00000005090) #25	WNT16 (ENSCLAG00000006294) #26	FAM3C (ENSCLAG00000006898) #27	PTPRZ1 (ENSCLAG00000007614) #28	AASS (ENSCLAG00000008604) #29	FEZF1 (ENSCLAG00000007477) #30	CADPS2 (ENSCLAG00000008518) #31	RNF133 (ENSCLAG00000016991) #32	SLC13A1 (ENSCLAG00000011173) #35	IQUB (ENSCLAG00000006424) #36	NDUFA5 (ENSCLAG00000006860) #37	ASB15 (ENSCLAG00000007102)	LMOD2 (ENSCLAG00000003580)
Guinea pig	MODERN SPECIES	11	PPP1R3A (ENSCPOG00000012124)	FOXP2 (ENSCPOG00000000938)	MDFIC (ENSCPOG00000034814) #7	TFEC (ENSCPOG00000012369) #8	TES (ENSCPOG00000008823) #9	ENSCPOG00000031628	CAV1 (ENSCPOG00000002524) #11	MET (ENSCPOG00000013525) #12	CAPZA2 (ENSCPOG00000007677) #13	ST7 (ENSCPOG00000015621) #14	WNT2 (ENSCPOG00000033615) #16	ASZ1 (ENSCPOG00000009750) #18	CFTR (ENSCPOG00000012767) #17	CTTNBP2 (ENSCPOG00000004194) #19	LSM8 (ENSCPOG00000035673) #20	KCND2 (ENSCPOG00000011847) #22	TSPAN12 (ENSCPOG00000011851) #23	ING3 (ENSCPOG00000023225) #24	CPED1 (ENSCPOG00000007693) #25	WNT16 (ENSCPOG00000005635) #26	FAM3C (ENSCPOG00000005639) #27	PTPRZ1 (ENSCPOG00000039416) #28	AASS (ENSCPOG00000007522) #29	FEZF1 (ENSCPOG00000013096) #30	CADPS2 (ENSCPOG00000005875) #31	RNF133 (ENSCPOG00000035136) #32	TAS2R16 (ENSCPOG00000007419) #34	SLC13A1 (ENSCPOG00000006440) #35	IQUB (ENSCPOG00000006286) #36	NDUFA5 (ENSCPOG00000030629) #37	ASB15 (ENSCPOG00000025748)
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Eulipotyphla	ANCESTRAL SPECIES	1842																ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23
Common shrew	MODERN SPECIES	5979																KCND2 (ENSSARG00000010020) #22	TSPAN12 (ENSSARG00000010024) #23
Hedgehog	MODERN SPECIES	599																ENSEEUG00000008184 #22
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Suina	ANCESTRAL SPECIES	19	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Pig	MODERN SPECIES	9	CAV2 (ENSSSCG00000016635) #10	CAV1 (ENSSSCG00000016634) #11	MET (ENSSSCG00000024351) #12	CAPZA2 (ENSSSCG00000028113) #13	ST7 (ENSSSCG00000016629) #14	WNT2 (ENSSSCG00000016628) #16	ASZ1 (ENSSSCG00000016627) #18	CFTR (ENSSSCG00000016626) #17	CTTNBP2 (ENSSSCG00000016625) #19	ENSSSCG00000050786	LSM8 (ENSSSCG00000021652) #20	ENSSSCG00000016623	ENSSSCG00000048258	ENSSSCG00000063110	ENSSSCG00000062673	KCND2 (ENSSSCG00000016621) #22	TSPAN12 (ENSSSCG00000016620) #23	ING3 (ENSSSCG00000016619) #24	CPED1 (ENSSSCG00000016618) #25	WNT16 (ENSSSCG00000016617) #26	FAM3C (ENSSSCG00000016616) #27	PTPRZ1 (ENSSSCG00000016614) #28	AASS (ENSSSCG00000016613) #29	FEZF1 (ENSSSCG00000031221) #30	CADPS2 (ENSSSCG00000016611) #31	TAS2R16 (ENSSSCG00000037368) #34	ENSSSCG00000035710	SLC13A1 (ENSSSCG00000016609) #35	IQUB (ENSSSCG00000016608) #36	NDUFA5 (ENSSSCG00000037869) #37	ASB15 (ENSSSCG00000016606)
Chacoan peccary	MODERN SPECIES	72														LSM8 (ENSCWAG00000000714) #20	ENSCWAG00000000745	KCND2 (ENSCWAG00000000757) #22	TSPAN12 (ENSCWAG00000000779) #23	ING3 (ENSCWAG00000000811) #24	CPED1 (ENSCWAG00000000900) #25	WNT16 (ENSCWAG00000001054) #26	FAM3C (ENSCWAG00000001074) #27	ENSCWAG00000001100	PTPRZ1 (ENSCWAG00000001255) #28	AASS (ENSCWAG00000002749) #29	ENSCWAG00000002779	FEZF1 (ENSCWAG00000002791) #30	CADPS2 (ENSCWAG00000002856) #31	TAS2R16 (ENSCWAG00000003208) #34	SLC13A1 (ENSCWAG00000003215) #35	IQUB (ENSCWAG00000003237) #36	NDUFA5 (ENSCWAG00000003275) #37
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a.c.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099.hb.b #37	ENSGT00940000157073	ENSGT00940000156567
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00390000018696.ab.b	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a.c.a #27	ENSGT01010000229619	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099.hb.b #37
Sperm whale	MODERN SPECIES	16	ENSPCTG00005000563	TFEC (ENSPCTG00005000435) #8	TES (ENSPCTG00005000357) #9	CAV2 (ENSPCTG00005000335) #10	ENSPCTG00005000318	CAV1 (ENSPCTG00005000307) #11	MET (ENSPCTG00005000258) #12	CAPZA2 (ENSPCTG00005003893) #13	ST7 (ENSPCTG00005003837) #14	WNT2 (ENSPCTG00005003803) #16	ASZ1 (ENSPCTG00005003795) #18	CFTR (ENSPCTG00005003550) #17	CTTNBP2 (ENSPCTG00005003446) #19	LSM8 (ENSPCTG00005003422) #20	ENSPCTG00005003384	ENSPCTG00005003369 #22	ENSPCTG00005003353	TSPAN12 (ENSPCTG00005003339) #23	ING3 (ENSPCTG00005003320) #24	CPED1 (ENSPCTG00005003296) #25	WNT16 (ENSPCTG00005003279) #26	FAM3C (ENSPCTG00005003260) #27	ENSPCTG00005003246	PTPRZ1 (ENSPCTG00005003179) #28	AASS (ENSPCTG00005003140) #29	FEZF1 (ENSPCTG00005003111) #30	CADPS2 (ENSPCTG00005002800) #31	SLC13A1 (ENSPCTG00005002663) #35	ENSPCTG00005002648	IQUB (ENSPCTG00005002620) #36	NDUFA5 (ENSPCTG00005002601) #37
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00390000018696.ab.b	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a.c.a #27	ENSGT01010000229619	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099.hb.b #37
Dolphin	MODERN SPECIES	2342																KCND2 (ENSTTRG00000016224) #22	TSPAN12 (ENSTTRG00000016225) #23	ING3 (ENSTTRG00000016226) #24	CPED1 (ENSTTRG00000016227) #25	WNT16 (ENSTTRG00000016228) #26	FAM3C (ENSTTRG00000016229) #27
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00390000018696.ab.b	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a.c.a #27	ENSGT01010000229619	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000162417.B	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36
Vaquita	MODERN SPECIES	20	TFEC (ENSPSNG00000008020) #8	TES (ENSPSNG00000007868) #9	CAV2 (ENSPSNG00000007812) #10	CAV1 (ENSPSNG00000007757) #11	MET (ENSPSNG00000007686) #12	CAPZA2 (ENSPSNG00000007567) #13	ST7 (ENSPSNG00000007232) #14	WNT2 (ENSPSNG00000007074) #16	ASZ1 (ENSPSNG00000006996) #18	CFTR (ENSPSNG00000006540) #17	ENSPSNG00000006366	CTTNBP2 (ENSPSNG00000006336) #19	LSM8 (ENSPSNG00000006282) #20	ENSPSNG00000006207	ENSPSNG00000006167	KCND2 (ENSPSNG00000006128) #22	TSPAN12 (ENSPSNG00000006100) #23	ING3 (ENSPSNG00000006054) #24	CPED1 (ENSPSNG00000006017) #25	WNT16 (ENSPSNG00000005981) #26	FAM3C (ENSPSNG00000005949) #27	ENSPSNG00000005910	PTPRZ1 (ENSPSNG00000005040) #28	AASS (ENSPSNG00000004701) #29	FEZF1 (ENSPSNG00000004653) #30	CADPS2 (ENSPSNG00000004337) #31	ENSPSNG00000004162	ENSPSNG00000020858	IQUB (ENSPSNG00000020805) #36	SLC13A1 (ENSPSNG00000020626) #35	ENSPSNG00000020559 #37
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00390000018696.ab.b	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a.c.a #27	ENSGT00390000002517.a.b.b.c.b.b	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000162417.B	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36
Narwhal	MODERN SPECIES	306	ENSMMNG00015007012	TFEC (ENSMMNG00015007059) #8	TES (ENSMMNG00015007124) #9	CAV2 (ENSMMNG00015007157) #10	CAV1 (ENSMMNG00015007169) #11	MET (ENSMMNG00015007208) #12	CAPZA2 (ENSMMNG00015007277) #13	ST7 (ENSMMNG00015007638) #14	ENSMMNG00015008101	WNT2 (ENSMMNG00015008114) #16	ASZ1 (ENSMMNG00015008132) #18	CFTR (ENSMMNG00015008191) #17	CTTNBP2 (ENSMMNG00015008242) #19	LSM8 (ENSMMNG00015008300) #20	ENSMMNG00015008326	KCND2 (ENSMMNG00015008351) #22	ENSMMNG00015008364	TSPAN12 (ENSMMNG00015008372) #23	ING3 (ENSMMNG00015008385) #24	CPED1 (ENSMMNG00015008430) #25	WNT16 (ENSMMNG00015008481) #26	ENSMMNG00015008492 #27	ENSMMNG00015008511	PTPRZ1 (ENSMMNG00015008685) #28	AASS (ENSMMNG00015008962) #29	ENSMMNG00015008989	FEZF1 (ENSMMNG00015009003) #30	CADPS2 (ENSMMNG00015009046) #31	ENSMMNG00015009100	SLC13A1 (ENSMMNG00015009128) #35	IQUB (ENSMMNG00015009140) #36
Beluga whale	MODERN SPECIES	72	ENSDLEG00000010692	TFEC (ENSDLEG00000010641) #8	TES (ENSDLEG00000010623) #9	CAV2 (ENSDLEG00000010616) #10	CAV1 (ENSDLEG00000010596) #11	MET (ENSDLEG00000010515) #12	CAPZA2 (ENSDLEG00000010489) #13	ST7 (ENSDLEG00000010402) #14	WNT2 (ENSDLEG00000010382) #16	ENSDLEG00000010374	ASZ1 (ENSDLEG00000010228) #18	CFTR (ENSDLEG00000009386) #17	CTTNBP2 (ENSDLEG00000009204) #19	LSM8 (ENSDLEG00000009162) #20	ENSDLEG00000009082	ENSDLEG00000009057 #22	ENSDLEG00000009040	TSPAN12 (ENSDLEG00000009002) #23	ING3 (ENSDLEG00000008957) #24	CPED1 (ENSDLEG00000008806) #25	WNT16 (ENSDLEG00000008763) #26	ENSDLEG00000008725 #27	ENSDLEG00000008697	PTPRZ1 (ENSDLEG00000008502) #28	ENSDLEG00000008472	AASS (ENSDLEG00000008185) #29	FEZF1 (ENSDLEG00000008135) #30	CADPS2 (ENSDLEG00000007974) #31	SLC13A1 (ENSDLEG00000013207) #35	ENSDLEG00000013176	IQUB (ENSDLEG00000013127) #36
Blue whale	MODERN SPECIES	20	TFEC (ENSBMSG00010007456) #8	ENSBMSG00010007423	TES (ENSBMSG00010007413) #9	CAV2 (ENSBMSG00010007399) #10	CAV1 (ENSBMSG00010007383) #11	MET (ENSBMSG00010007360) #12	CAPZA2 (ENSBMSG00010007309) #13	ST7 (ENSBMSG00010007217) #14	WNT2 (ENSBMSG00010007149) #16	ASZ1 (ENSBMSG00010007122) #18	CFTR (ENSBMSG00010007097) #17	CTTNBP2 (ENSBMSG00010007046) #19	LSM8 (ENSBMSG00010007016) #20	ENSBMSG00010006964	ENSBMSG00010006935	KCND2 (ENSBMSG00010006920) #22	TSPAN12 (ENSBMSG00010006907) #23	ING3 (ENSBMSG00010006892) #24	CPED1 (ENSBMSG00010006795) #25	WNT16 (ENSBMSG00010006732) #26	ENSBMSG00010006715 #27	PTPRZ1 (ENSBMSG00010006646) #28	AASS (ENSBMSG00010006576) #29	CADPS2 (ENSBMSG00010006309) #31	ENSBMSG00010006242	TAS2R16 (ENSBMSG00010006234) #34	SLC13A1 (ENSBMSG00010006206) #35	ENSBMSG00010006184	IQUB (ENSBMSG00010006156) #36	NDUFA5 (ENSBMSG00010006141) #37	ASB15 (ENSBMSG00010006126)
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Bovidae	ANCESTRAL SPECIES	12	ENSGT01100000263600	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Caprinae	ANCESTRAL SPECIES	10	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00950000185265	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.b #20	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Rambouillet Sheep	MODERN SPECIES	20	RALA (ENSOARG00020000572)	ENSOARG00020000581	POU6F2 (ENSOARG00020000606)	VPS41 (ENSOARG00020000815)	AMPH (ENSOARG00020001336)	ENSOARG00020001937	ENSOARG00020001954	ENSOARG00020001968	ENSOARG00020001983	ENSOARG00020002001	ENSOARG00020002006	ENSOARG00020002009	LSM8 (ENSOARG00020002018) #20	ENSOARG00020002076	ENSOARG00020002086	KCND2 (ENSOARG00020002102) #22	TSPAN12 (ENSOARG00020002120) #23	ING3 (ENSOARG00020002148) #24	CPED1 (ENSOARG00020002197) #25	WNT16 (ENSOARG00020002230) #26	FAM3C (ENSOARG00020002246) #27	PTPRZ1 (ENSOARG00020002274) #28	AASS (ENSOARG00020002396) #29	FEZF1 (ENSOARG00020002443) #30	CADPS2 (ENSOARG00020002550) #31	ENSOARG00020003299 #33	TAS2R16 (ENSOARG00020003346) #34	SLC13A1 (ENSOARG00020003399) #35	ENSOARG00020003808	ENSOARG00020003833 #37	ASB15 (ENSOARG00020003915)
Goat	MODERN SPECIES	23	MPLKIP (ENSCHIG00000021871)	ENSCHIG00000022322	CDK13 (ENSCHIG00000022113)	RALA (ENSCHIG00000013549)	YAE1 (ENSCHIG00000016002)	ENSCHIG00000016882	ENSCHIG00000020600	VPS41 (ENSCHIG00000005959)	ENSCHIG00000011903	AMPH (ENSCHIG00000020495)	ENSCHIG00000013794	ENSCHIG00000018076	ENSCHIG00000007301	LSM8 (ENSCHIG00000014201) #20	ENSCHIG00000022010	KCND2 (ENSCHIG00000017913) #22	ENSCHIG00000025503	TSPAN12 (ENSCHIG00000012755) #23	ING3 (ENSCHIG00000009707) #24	CPED1 (ENSCHIG00000007761) #25	WNT16 (ENSCHIG00000016384) #26	FAM3C (ENSCHIG00000026717) #27	PTPRZ1 (ENSCHIG00000017298) #28	AASS (ENSCHIG00000009703) #29	FEZF1 (ENSCHIG00000012204) #30	CADPS2 (ENSCHIG00000022820) #31	SLC13A1 (ENSCHIG00000014530) #35	IQUB (ENSCHIG00000021401) #36	NDUFA5 (ENSCHIG00000014906) #37	ASB15 (ENSCHIG00000018758)	LMOD2 (ENSCHIG00000023924)
Bovinae	ANCESTRAL SPECIES	8	ENSGT00390000014996	ENSGT00550000074870.b	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000159695.h	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000153305.d.`b.b	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481
Bos	ANCESTRAL SPECIES	8	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00940000153143.a.a.f.e.b.b	ENSGT00950000185265.d	ENSGT00950000185265.c	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #20	ENSGT00940000161777.b	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000153305.d.`b.b	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000159695.h	ENSGT00940000155142	ENSGT00390000011176	ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #20	ENSGT00550000074794.k.b.a	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000153305.d.`b.b	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099.nb #37
Cow	MODERN SPECIES	23	CDK13 (ENSBTAG00000001528)	ENSBTAG00000054825	RALA (ENSBTAG00000006661)	YAE1 (ENSBTAG00000001892)	POU6F2 (ENSBTAG00000013648)	VPS41 (ENSBTAG00000007305)	AMPH (ENSBTAG00000031967)	ENSBTAG00000000144	ENSBTAG00000053474	ENSBTAG00000055254	ENSBTAG00000002859	ENSBTAG00000049399	LSM8 (ENSBTAG00000012649) #20	ENSBTAG00000006152	ENSBTAG00000031464	KCND2 (ENSBTAG00000032077) #22	TSPAN12 (ENSBTAG00000015337) #23	ING3 (ENSBTAG00000016332) #24	CPED1 (ENSBTAG00000002938) #25	WNT16 (ENSBTAG00000002940) #26	FAM3C (ENSBTAG00000007976) #27	PTPRZ1 (ENSBTAG00000012119) #28	AASS (ENSBTAG00000012128) #29	FEZF1 (ENSBTAG00000005103) #30	CADPS2 (ENSBTAG00000005110) #31	TAS2R16 (ENSBTAG00000032049) #34	SLC13A1 (ENSBTAG00000006674) #35	IQUB (ENSBTAG00000004405) #36	NDUFA5 (ENSBTAG00000009334) #37	ASB15 (ENSBTAG00000002151)	LMOD2 (ENSBTAG00000002157)
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005020654	ENSBIXG00005020661	ENSBIXG00005020677	ENSBIXG00005020685	ENSBIXG00005020688	ENSBIXG00005020710	ENSBIXG00005020722	ENSBIXG00005020732	ENSBIXG00005020739	ENSBIXG00005003508	ENSBIXG00005020753	LSM8 (ENSBIXG00005007213) #20	ENSBIXG00005020819	ENSBIXG00005020842	ENSBIXG00005020857	KCND2 (ENSBIXG00005020893) #22	TSPAN12 (ENSBIXG00005020981) #23	ENSBIXG00005021009	ING3 (ENSBIXG00005021098) #24	CPED1 (ENSBIXG00005021186) #25	WNT16 (ENSBIXG00005021232) #26	FAM3C (ENSBIXG00005021252) #27	PTPRZ1 (ENSBIXG00005021416) #28	AASS (ENSBIXG00005021503) #29	ENSBIXG00005003630	FEZF1 (ENSBIXG00005000004) #30	CADPS2 (ENSBIXG00005007840) #31	TAS2R16 (ENSBIXG00005021920) #34	SLC13A1 (ENSBIXG00005003706) #35	ENSBIXG00005022025	IQUB (ENSBIXG00005003742) #36
Bos_a	ANCESTRAL SPECIES	12	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.a.a	ENSGT00940000156821.p.b	ENSGT00940000153143.a.b.b.a.b.d.b.a.b.b	ENSGT00940000153143.a.a.f.e.a.b	ENSGT00940000153143.a.a.f.e.a.a.a	ENSGT00940000153143.a.a.f.e.a.a.b.b	ENSGT00940000153143.a.a.f.e.a.a.b.a	ENSGT00940000153143.a.b.b.a.b.d.b.b.f.b.b	ENSGT00950000185265.c	ENSGT00940000153143.a.b.b.a.b.d.a	ENSGT00730000111212.i.a #20	ENSGT00940000161777.b	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.a.b.b.a.a.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Domestic yak	MODERN SPECIES	23	ENSBGRG00000007791	ENSBGRG00000007724	ENSBGRG00000007684	ENSBGRG00000007662	ENSBGRG00000007638	ENSBGRG00000007614	ENSBGRG00000007552	ENSBGRG00000007497	ENSBGRG00000007474	ENSBGRG00000007452	ENSBGRG00000007313 #20	ENSBGRG00000026231	ENSBGRG00000026227	ENSBGRG00000026222	ENSBGRG00000026214	KCND2 (ENSBGRG00000026206) #22	TSPAN12 (ENSBGRG00000026203) #23	ENSBGRG00000026200	ING3 (ENSBGRG00000026186) #24	ENSBGRG00000026183	CPED1 (ENSBGRG00000026179) #25	WNT16 (ENSBGRG00000026173) #26	FAM3C (ENSBGRG00000026163) #27	PTPRZ1 (ENSBGRG00000025791) #28	AASS (ENSBGRG00000025745) #29	FEZF1 (ENSBGRG00000025722) #30	CADPS2 (ENSBGRG00000025072) #31	TAS2R16 (ENSBGRG00000025023) #34	SLC13A1 (ENSBGRG00000024917) #35	ENSBGRG00000024906	ENSBGRG00000024901
Wild yak	MODERN SPECIES	2021															ENSBMUG00000008371	ENSBMUG00000008363 #22
Yarkand deer	MODERN SPECIES	9	CDK13 (ENSCHYG00000022509)	RALA (ENSCHYG00000022661)	YAE1 (ENSCHYG00000022705)	POU6F2 (ENSCHYG00000022756)	VPS41 (ENSCHYG00000023031)	AMPH (ENSCHYG00000023423)	ENSCHYG00000023515	TRGV9 (ENSCHYG00000023546)	ENSCHYG00000023578	ENSCHYG00000023641	ENSCHYG00000023676	ENSCHYG00000023709	ENSCHYG00000023745	ENSCHYG00000023772 #20	ENSCHYG00000023821	KCND2 (ENSCHYG00000023858) #22	TSPAN12 (ENSCHYG00000023924) #23	ING3 (ENSCHYG00000023988) #24	CPED1 (ENSCHYG00000024149) #25	WNT16 (ENSCHYG00000024300) #26	FAM3C (ENSCHYG00000024340) #27	ENSCHYG00000024383	AASS (ENSCHYG00000026446) #29	FEZF1 (ENSCHYG00000026487) #30	CADPS2 (ENSCHYG00000026611) #31	ENSCHYG00000026909	TAS2R16 (ENSCHYG00000026914) #34	SLC13A1 (ENSCHYG00000026920) #35	IQUB (ENSCHYG00000026931) #36	ENSCHYG00000026937 #37	ASB15 (ENSCHYG00000026941)
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00990000210481	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Alpaca	MODERN SPECIES	5753																KCND2 (ENSVPAG00000000991) #22	TSPAN12 (ENSVPAG00000000992) #23
Arabian camel	MODERN SPECIES	33	TFEC (ENSCDRG00005001818) #8	TES (ENSCDRG00005001915) #9	ENSCDRG00005001925	CAV2 (ENSCDRG00005001940) #10	CAV1 (ENSCDRG00005001956) #11	MET (ENSCDRG00005001975) #12	CAPZA2 (ENSCDRG00005002005) #13	ST7 (ENSCDRG00005002055) #14	WNT2 (ENSCDRG00005002127) #16	ASZ1 (ENSCDRG00005002142) #18	CFTR (ENSCDRG00005002205) #17	CTTNBP2 (ENSCDRG00005002863) #19	LSM8 (ENSCDRG00005003356) #20	ENSCDRG00005003389	ENSCDRG00005003449	KCND2 (ENSCDRG00005003477) #22	TSPAN12 (ENSCDRG00005003541) #23	ING3 (ENSCDRG00005003592) #24	CPED1 (ENSCDRG00005003698) #25	WNT16 (ENSCDRG00005003896) #26	FAM3C (ENSCDRG00005003932) #27	PTPRZ1 (ENSCDRG00005004019) #28	AASS (ENSCDRG00005004255) #29	FEZF1 (ENSCDRG00005004315) #30	CADPS2 (ENSCDRG00005004422) #31	SLC13A1 (ENSCDRG00005004922) #35	ENSCDRG00005004974	IQUB (ENSCDRG00005004987) #36	NDUFA5 (ENSCDRG00005005014) #37	ASB15 (ENSCDRG00005005043)	LMOD2 (ENSCDRG00005005071)
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Equus	ANCESTRAL SPECIES	13	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Donkey	MODERN SPECIES		FOXP2 (ENSEASG00005008813)	MDFIC (ENSEASG00005025429) #7	TFEC (ENSEASG00005036487) #8	TES (ENSEASG00005008832) #9	ENSEASG00005034179 #10	CAV1 (ENSEASG00005030696) #11	MET (ENSEASG00005008840) #12	CAPZA2 (ENSEASG00005008845) #13	ST7 (ENSEASG00005008859) #14	WNT2 (ENSEASG00005008889) #16	ASZ1 (ENSEASG00005008894) #18	CFTR (ENSEASG00005008909) #17	CTTNBP2 (ENSEASG00005008929) #19	LSM8 (ENSEASG00005027658) #20	ENSEASG00005008937	KCND2 (ENSEASG00005008938) #22	TSPAN12 (ENSEASG00005008941) #23	ING3 (ENSEASG00005008942) #24	ENSEASG00005028595 #25	ENSEASG00005008958 #25	WNT16 (ENSEASG00005008977) #26	FAM3C (ENSEASG00005008980) #27	PTPRZ1 (ENSEASG00005008993) #28	AASS (ENSEASG00005009016) #29	FEZF1 (ENSEASG00005009026) #30	CADPS2 (ENSEASG00005009041) #31	TAS2R16 (ENSEASG00005009304) #34	SLC13A1 (ENSEASG00005009316) #35	IQUB (ENSEASG00005009328) #36	NDUFA5 (ENSEASG00005009337) #37	ASB15 (ENSEASG00005009342)
Horse	MODERN SPECIES	25	MDFIC (ENSECAG00000013772) #7	TFEC (ENSECAG00000013937) #8	TES (ENSECAG00000016917) #9	CAV2 (ENSECAG00000037857) #10	CAV1 (ENSECAG00000009134) #11	MET (ENSECAG00000010385) #12	CAPZA2 (ENSECAG00000021693) #13	ST7 (ENSECAG00000008375) #14	ENSECAG00000059035	WNT2 (ENSECAG00000024641) #16	ENSECAG00000043879	ASZ1 (ENSECAG00000011002) #18	CFTR (ENSECAG00000009139) #17	CTTNBP2 (ENSECAG00000025076) #19	LSM8 (ENSECAG00000024025) #20	KCND2 (ENSECAG00000002703) #22	TSPAN12 (ENSECAG00000001545) #23	ING3 (ENSECAG00000008147) #24	CPED1 (ENSECAG00000017094) #25	FAM3C (ENSECAG00000008527) #27	WNT16 (ENSECAG00000006880) #26	PTPRZ1 (ENSECAG00000011293) #28	AASS (ENSECAG00000021479) #29	FEZF1 (ENSECAG00000022989) #30	CADPS2 (ENSECAG00000024021) #31	SLC13A1 (ENSECAG00000020615) #35	IQUB (ENSECAG00000005249) #36	ASB15 (ENSECAG00000011379)	LMOD2 (ENSECAG00000057098)	WASL (ENSECAG00000015578)	ENSECAG00000023576
Chiroptera	ANCESTRAL SPECIES	41	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Megabat	MODERN SPECIES	2758																KCND2 (ENSPVAG00000010108) #22	TSPAN12 (ENSPVAG00000010110) #23	ING3 (ENSPVAG00000010112) #24	CPED1 (ENSPVAG00000010115) #25
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01100000263477.B.d.b #34	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Microbat	MODERN SPECIES	1182														ENSMLUG00000025422	ENSMLUG00000029655	KCND2 (ENSMLUG00000010696) #22	TSPAN12 (ENSMLUG00000010727) #23	ENSMLUG00000024124	ING3 (ENSMLUG00000016322) #24	CPED1 (ENSMLUG00000016002) #25	WNT16 (ENSMLUG00000016018) #26	FAM3C (ENSMLUG00000016022) #27
Greater horseshoe bat	MODERN SPECIES	18	TES (ENSRFEG00010019300) #9	CAV2 (ENSRFEG00010019273) #10	CAV1 (ENSRFEG00010019224) #11	MET (ENSRFEG00010019152) #12	CAPZA2 (ENSRFEG00010019032) #13	ST7 (ENSRFEG00010018747) #14	WNT2 (ENSRFEG00010018681) #16	ASZ1 (ENSRFEG00010018560) #18	ENSRFEG00010018517	CFTR (ENSRFEG00010017672) #17	CTTNBP2 (ENSRFEG00010017601) #19	ENSRFEG00010017515 #20	ENSRFEG00010017376	ENSRFEG00010017356	ENSRFEG00010017340	KCND2 (ENSRFEG00010017250) #22	TSPAN12 (ENSRFEG00010017208) #23	ING3 (ENSRFEG00010017054) #24	CPED1 (ENSRFEG00010016992) #25	WNT16 (ENSRFEG00010016926) #26	FAM3C (ENSRFEG00010016879) #27	PTPRZ1 (ENSRFEG00010016626) #28	AASS (ENSRFEG00010016545) #29	FEZF1 (ENSRFEG00010016383) #30	RNF133 (ENSRFEG00010016316) #32	CADPS2 (ENSRFEG00010015967) #31	TAS2R16 (ENSRFEG00010015907) #34	SLC13A1 (ENSRFEG00010015742) #35	IQUB (ENSRFEG00010015538) #36	ENSRFEG00010015311 #37	ASB15 (ENSRFEG00010015245)
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00390000007479.y.b	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00390000007479.y.b	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.gb.a #37	ENSGT00940000157073	ENSGT00940000156567
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00900000143058	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.gb.a #37	ENSGT00940000157073	ENSGT00940000156567
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00900000143058	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00390000015224.c.b.b.a.b.a	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.gb.a #37	ENSGT00940000157073	ENSGT00940000156567
lion	MODERN SPECIES	2	TFEC (ENSPLOG00000003253) #8	TES (ENSPLOG00000003361) #9	CAV2 (ENSPLOG00000003376) #10	CAV1 (ENSPLOG00000003388) #11	ENSPLOG00000003404	CAPZA2 (ENSPLOG00000003487) #13	ST7 (ENSPLOG00000003747) #14	WNT2 (ENSPLOG00000004225) #16	ASZ1 (ENSPLOG00000004231) #18	CFTR (ENSPLOG00000004296) #17	CTTNBP2 (ENSPLOG00000004483) #19	LSM8 (ENSPLOG00000004510) #20	ENSPLOG00000004527	ENSPLOG00000004535	ENSPLOG00000004539	KCND2 (ENSPLOG00000004548) #22	TSPAN12 (ENSPLOG00000004557) #23	ING3 (ENSPLOG00000004574) #24	CPED1 (ENSPLOG00000004600) #25	WNT16 (ENSPLOG00000004662) #26	FAM3C (ENSPLOG00000004694) #27	PTPRZ1 (ENSPLOG00000004914) #28	AASS (ENSPLOG00000005333) #29	FEZF1 (ENSPLOG00000005395) #30	CADPS2 (ENSPLOG00000005636) #31	SLC13A1 (ENSPLOG00000006227) #35	ENSPLOG00000006309 #36	NDUFA5 (ENSPLOG00000006357) #37	ASB15 (ENSPLOG00000006438)	ENSPLOG00000006488	WASL (ENSPLOG00000006519)
leopard	MODERN SPECIES	23														ENSPPRG00000019972	ENSPPRG00000019953	KCND2 (ENSPPRG00000008572) #22	TSPAN12 (ENSPPRG00000008555) #23	ING3 (ENSPPRG00000008514) #24	CPED1 (ENSPPRG00000008429) #25	WNT16 (ENSPPRG00000008351) #26	FAM3C (ENSPPRG00000008287) #27	PTPRZ1 (ENSPPRG00000007906) #28	ENSPPRG00000019933	AASS (ENSPPRG00000007468) #29	FEZF1 (ENSPPRG00000006922) #30	CADPS2 (ENSPPRG00000006851) #31	ENSPPRG00000006309 #33	SLC13A1 (ENSPPRG00000006256) #35	IQUB (ENSPPRG00000006201) #36	ENSPPRG00000006159 #37	ASB15 (ENSPPRG00000005862)
Tiger	MODERN SPECIES	296	TFEC (ENSPTIG00000018257) #8	TES (ENSPTIG00000021347) #9	CAV2 (ENSPTIG00000021626) #10	CAV1 (ENSPTIG00000021784) #11	ENSPTIG00000021973	ENSPTIG00000002142 #12	CAPZA2 (ENSPTIG00000022058) #13	ST7 (ENSPTIG00000022098) #14	WNT2 (ENSPTIG00000014444) #16	ASZ1 (ENSPTIG00000014931) #18	CFTR (ENSPTIG00000017030) #17	ENSPTIG00000017786	CTTNBP2 (ENSPTIG00000019650) #19	LSM8 (ENSPTIG00000004722) #20	ENSPTIG00000005580	KCND2 (ENSPTIG00000006572) #22	TSPAN12 (ENSPTIG00000007270) #23	ING3 (ENSPTIG00000008202) #24	CPED1 (ENSPTIG00000010438) #25	WNT16 (ENSPTIG00000013116) #26	FAM3C (ENSPTIG00000014410) #27	PTPRZ1 (ENSPTIG00000014785) #28	AASS (ENSPTIG00000020365) #29	FEZF1 (ENSPTIG00000006097) #30	CADPS2 (ENSPTIG00000008072) #31	ENSPTIG00000019227 #33	SLC13A1 (ENSPTIG00000019436) #35	IQUB (ENSPTIG00000020106) #36	NDUFA5 (ENSPTIG00000021225) #37	ASB15 (ENSPTIG00000021697)	LMOD2 (ENSPTIG00000021981)
Cat	MODERN SPECIES	1	TES (ENSFCAG00000029911) #9	CAV2 (ENSFCAG00000023324) #10	CAV1 (ENSFCAG00000034785) #11	MET (ENSFCAG00000009534) #12	CAPZA2 (ENSFCAG00000027103) #13	ST7 (ENSFCAG00000013253) #14	WNT2 (ENSFCAG00000036421) #16	ASZ1 (ENSFCAG00000023842) #18	CFTR (ENSFCAG00000014955) #17	CTTNBP2 (ENSFCAG00000014956) #19	ENSFCAG00000032304	LSM8 (ENSFCAG00000036620) #20	ENSFCAG00000031973	ENSFCAG00000047748	ENSFCAG00000038564	KCND2 (ENSFCAG00000007877) #22	TSPAN12 (ENSFCAG00000023943) #23	ING3 (ENSFCAG00000029472) #24	CPED1 (ENSFCAG00000023648) #25	FAM3C (ENSFCAG00000023087) #27	WNT16 (ENSFCAG00000029148) #26	ENSFCAG00000030800	PTPRZ1 (ENSFCAG00000015760) #28	AASS (ENSFCAG00000029895) #29	FEZF1 (ENSFCAG00000013521) #30	CADPS2 (ENSFCAG00000000574) #31	SLC13A1 (ENSFCAG00000013589) #35	IQUB (ENSFCAG00000008476) #36	NDUFA5 (ENSFCAG00000039291) #37	ASB15 (ENSFCAG00000004489)	WASL (ENSFCAG00000010127)
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00390000007479.y.b	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Canidae	ANCESTRAL SPECIES	22	ENSGT00940000157682.B	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022.a #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022.a #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212.q.b #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216.q.a #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36
Dog	DUPLICATION
Dog	MODERN SPECIES	5	PPP1R3A (ENSCAFG00845005952)	FOXP2 (ENSCAFG00845006016)	MDFIC (ENSCAFG00845006114) #7	TFEC (ENSCAFG00845006297) #8	TES (ENSCAFG00845006418) #9	CAV2 (ENSCAFG00845006745) #10	CAV1 (ENSCAFG00845006847) #11	MET (ENSCAFG00845007244) #12	CAPZA2 (ENSCAFG00845007934) #13	ST7 (ENSCAFG00845008329) #14	WNT2 (ENSCAFG00845008849) #16	ASZ1 (ENSCAFG00845008921) #18	CFTR (ENSCAFG00845009171) #17	ENSCAFG00845010283 #20	ENSCAFG00845010332	ENSCAFG00845010446 #22	TSPAN12 (ENSCAFG00845010513) #23	ING3 (ENSCAFG00845010632) #24	CPED1 (ENSCAFG00845010739) #25	WNT16 (ENSCAFG00845010924) #26	FAM3C (ENSCAFG00845010960) #27	PTPRZ1 (ENSCAFG00845012086) #28	AASS (ENSCAFG00845014560) #29	CADPS2 (ENSCAFG00845014715) #31	SLC13A1 (ENSCAFG00845014948) #35	ENSCAFG00845015049 #36
Dog	MODERN SPECIES	5															ENSCAFG00845006817	ENSCAFG00845006842 #22	ENSCAFG00845006866	ENSCAFG00845006907	ENSCAFG00845006991	ENSCAFG00845007077	ENSCAFG00845007128	H2BC26 (ENSCAFG00845007167)	HIST3H2A (ENSCAFG00845007204)	TRIM17 (ENSCAFG00845007329)	ENSCAFG00845007457	ENSCAFG00845007586	ENSCAFG00845007619	ENSCAFG00845007646	IBA57 (ENSCAFG00845007710)	GJC2 (ENSCAFG00845007738)	GUK1 (ENSCAFG00845007785)
Red fox	MODERN SPECIES	89	ENSVVUG00000010747	FOXP2 (ENSVVUG00000010693)	MDFIC (ENSVVUG00000010659) #7	ENSVVUG00000010635	TFEC (ENSVVUG00000010561) #8	TES (ENSVVUG00000010544) #9	CAV1 (ENSVVUG00000010520) #11	MET (ENSVVUG00000010494) #12	CAPZA2 (ENSVVUG00000010465) #13	ST7 (ENSVVUG00000010415) #14	WNT2 (ENSVVUG00000010406) #16	ASZ1 (ENSVVUG00000010394) #18	CFTR (ENSVVUG00000001638) #17	CTTNBP2 (ENSVVUG00000000172) #19	ENSVVUG00000030332	KCND2 (ENSVVUG00000030320) #22	ENSVVUG00000030316
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00390000007479.y.b.a	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000153661.b.b.m	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567	ENSGT00730000110895.b.a
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00390000007479.y.b.a	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000153661.b.b.m	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567	ENSGT00730000110895.b.a
American mink	MODERN SPECIES	3	TFEC (ENSNVIG00000002689) #8	TES (ENSNVIG00000002631) #9	CAV2 (ENSNVIG00000002622) #10	CAV1 (ENSNVIG00000002597) #11	ENSNVIG00000002563	ENSNVIG00000002532 #12	CAPZA2 (ENSNVIG00000002498) #13	ST7 (ENSNVIG00000002263) #14	WNT2 (ENSNVIG00000002216) #16	ASZ1 (ENSNVIG00000002205) #18	CFTR (ENSNVIG00000002052) #17	CTTNBP2 (ENSNVIG00000002011) #19	LSM8 (ENSNVIG00000001976) #20	ENSNVIG00000001960	ENSNVIG00000001954	KCND2 (ENSNVIG00000001932) #22	TSN12 (ENSNVIG00000001909) #23	ING3 (ENSNVIG00000001859) #24	CPED1 (ENSNVIG00000001760) #25	WNT16 (ENSNVIG00000001731) #26	FAM3C (ENSNVIG00000001700) #27	PTPRZ1 (ENSNVIG00000001621) #28	AASS (ENSNVIG00000001583) #29	FEZF1 (ENSNVIG00000001557) #30	ENSNVIG00000001541	CADPS2 (ENSNVIG00000001278) #31	SLC13A1 (ENSNVIG00000001237) #35	IQUB (ENSNVIG00000001202) #36	NDUFA5 (ENSNVIG00000001143) #37	ASB15 (ENSNVIG00000001045)	LMOD2 (ENSNVIG00000001035)
Ferret	MODERN SPECIES	168	ENSMPUG00000007300	TFEC (ENSMPUG00000007248) #8	TES (ENSMPUG00000007238) #9	CAV2 (ENSMPUG00000007232) #10	CAV1 (ENSMPUG00000007224) #11	MET (ENSMPUG00000007199) #12	ST7 (ENSMPUG00000007184) #14	WNT2 (ENSMPUG00000007172) #16	ASZ1 (ENSMPUG00000007155) #18	CFTR (ENSMPUG00000007138) #17	CTTNBP2 (ENSMPUG00000007124) #19	ENSMPUG00000007110	ENSMPUG00000007100 #20	ENSMPUG00000007093	ENSMPUG00000007078	KCND2 (ENSMPUG00000007070) #22	ENSMPUG00000007063	TSPAN12 (ENSMPUG00000007059) #23	ING3 (ENSMPUG00000007054) #24	CPED1 (ENSMPUG00000006988) #25	WNT16 (ENSMPUG00000006909) #26	FAM3C (ENSMPUG00000006897) #27	PTPRZ1 (ENSMPUG00000006874) #28	AASS (ENSMPUG00000006862) #29	FEZF1 (ENSMPUG00000006851) #30	CADPS2 (ENSMPUG00000006834) #31	SLC13A1 (ENSMPUG00000006826) #35	IQUB (ENSMPUG00000006817) #36	NDUFA5 (ENSMPUG00000006811) #37	ENSMPUG00000006805	ASB15 (ENSMPUG00000006795)
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00490000043329.a.a.a.pb.c.b	ENSGT01020000230614	ENSGT00940000155472.a.a #22	ENSGT01010000229956	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Giant Panda	MODERN SPECIES		TFEC (ENSAMEG00000018238) #8	TES (ENSAMEG00000018237) #9	CAV2 (ENSAMEG00000029109) #10	CAV1 (ENSAMEG00000027933) #11	MET (ENSAMEG00000001314) #12	CAPZA2 (ENSAMEG00000001306) #13	ST7 (ENSAMEG00000001267) #14	WNT2 (ENSAMEG00000001256) #16	ASZ1 (ENSAMEG00000001244) #18	CFTR (ENSAMEG00000001184) #17	CTTNBP2 (ENSAMEG00000001163) #19	LSM8 (ENSAMEG00000001162) #20	ENSAMEG00000001159	ENSAMEG00000027977	ENSAMEG00000031336	KCND2 (ENSAMEG00000020256) #22	ENSAMEG00000029289	TSPAN12 (ENSAMEG00000005955) #23	ING3 (ENSAMEG00000005975) #24	CPED1 (ENSAMEG00000006006) #25	WNT16 (ENSAMEG00000006022) #26	FAM3C (ENSAMEG00000006035) #27	PTPRZ1 (ENSAMEG00000004272) #28	AASS (ENSAMEG00000004321) #29	FEZF1 (ENSAMEG00000004386) #30	CADPS2 (ENSAMEG00000004390) #31	SLC13A1 (ENSAMEG00000004466) #35	IQUB (ENSAMEG00000004491) #36	NDUFA5 (ENSAMEG00000004512) #37	ASB15 (ENSAMEG00000004517)	ENSAMEG00000023643
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567	ENSGT00730000110895.b.a
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000155472.a.a #22
Sloth	MODERN SPECIES	6720																KCND2 (ENSCHOG00000006817) #22
Armadillo	MODERN SPECIES	1557																KCND2 (ENSDNOG00000000011) #22	ENSDNOG00000009660	ENSDNOG00000044328	TSPAN12 (ENSDNOG00000033776) #23	ING3 (ENSDNOG00000001495) #24	CPED1 (ENSDNOG00000001500) #25
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567	ENSGT00730000110895.b.a
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567	ENSGT00730000110895.b.a
Elephant	MODERN SPECIES	428	MDFIC (ENSLAFG00000013504) #7	ENSLAFG00000017267 #8	ENSLAFG00000031865 #8	TES (ENSLAFG00000017268) #9	CAV2 (ENSLAFG00000015065) #10	CAV1 (ENSLAFG00000028864) #11	MET (ENSLAFG00000011703) #12	CAPZA2 (ENSLAFG00000007766) #13	ST7 (ENSLAFG00000016129) #14	WNT2 (ENSLAFG00000022699) #16	ASZ1 (ENSLAFG00000005746) #18	CFTR (ENSLAFG00000005753) #17	CTTNBP2 (ENSLAFG00000005761) #19	LSM8 (ENSLAFG00000011242) #20	ENSLAFG00000011244	KCND2 (ENSLAFG00000008593) #22	TSPAN12 (ENSLAFG00000004689) #23	ING3 (ENSLAFG00000030488) #24	ENSLAFG00000032200 #25	ENSLAFG00000005279 #25	WNT16 (ENSLAFG00000010025) #26	FAM3C (ENSLAFG00000010029) #27	PTPRZ1 (ENSLAFG00000004565) #28	AASS (ENSLAFG00000004573) #29	FEZF1 (ENSLAFG00000013550) #30	CADPS2 (ENSLAFG00000013553) #31	SLC13A1 (ENSLAFG00000005670) #35	IQUB (ENSLAFG00000002619) #36	NDUFA5 (ENSLAFG00000030971) #37	ASB15 (ENSLAFG00000011116)	LMOD2 (ENSLAFG00000007192)
Hyrax	MODERN SPECIES	6302																KCND2 (ENSPCAG00000003715) #22
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000161777.a	ENSGT00940000153661.b	ENSGT00940000161777.b	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Opossum	MODERN SPECIES	7	ST7 (ENSMODG00000015806) #14	WNT2 (ENSMODG00000015792) #16	ASZ1 (ENSMODG00000015784) #18	CFTR (ENSMODG00000015771) #17	CTTNBP2 (ENSMODG00000015754) #19	LSM8 (ENSMODG00000015729) #20	ENSMODG00000015735	ENSMODG00000027321	ENSMODG00000015525	ENSMODG00000024541	ENSMODG00000042953	ENSMODG00000015511	ENSMODG00000015504	ENSMODG00000044091	ENSMODG00000043163	KCND2 (ENSMODG00000024535) #22	TSPAN12 (ENSMODG00000015495) #23	ING3 (ENSMODG00000015490) #24	ENSMODG00000015486 #25	ENSMODG00000039477	ENSMODG00000038957 #25	WNT16 (ENSMODG00000015480) #26	FAM3C (ENSMODG00000039929) #27	PTPRZ1 (ENSMODG00000015471) #28	AASS (ENSMODG00000015461) #29	FEZF1 (ENSMODG00000015458) #30	CADPS2 (ENSMODG00000015438) #31	RNF148 (ENSMODG00000029167) #33	SLC13A1 (ENSMODG00000015406) #35	IQUB (ENSMODG00000015389) #36	ENSMODG00000029118
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000159667	ENSGT00940000164196.g	ENSGT00890000139436.A.b	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	4	TFEC (ENSSHAG00000012198) #8	TES (ENSSHAG00000013689) #9	ENSSHAG00000020716 #10	CAV1 (ENSSHAG00000030626) #11	MET (ENSSHAG00000015881) #12	CAPZA2 (ENSSHAG00000022040) #13	ST7 (ENSSHAG00000016896) #14	WNT2 (ENSSHAG00000017186) #16	ASZ1 (ENSSHAG00000017307) #18	CFTR (ENSSHAG00000030052) #17	CTTNBP2 (ENSSHAG00000017847) #19	LSM8 (ENSSHAG00000023318) #20	ENSSHAG00000018617	ENSSHAG00000026856	ENSSHAG00000018547	KCND2 (ENSSHAG00000007231) #22	TSPAN12 (ENSSHAG00000012139) #23	ING3 (ENSSHAG00000013063) #24	CPED1 (ENSSHAG00000013416) #25	WNT16 (ENSSHAG00000027699) #26	ENSSHAG00000015103 #27	PTPRZ1 (ENSSHAG00000016799) #28	AASS (ENSSHAG00000017254) #29	FEZF1 (ENSSHAG00000001391) #30	CADPS2 (ENSSHAG00000002469) #31	RNF133 (ENSSHAG00000008983) #32	RNF148 (ENSSHAG00000009015) #33	SLC13A1 (ENSSHAG00000001720) #35	IQUB (ENSSHAG00000008101) #36	ENSSHAG00000024396 #37	ASB15 (ENSSHAG00000009459)
Tasmanian devil	MODERN SPECIES	21	HSD17B10 (ENSSHAG00000005913)	ENSSHAG00000005899	ENSSHAG00000005098	ENSSHAG00000004827	ENSSHAG00000026834	ENSSHAG00000029754	FOXP3 (ENSSHAG00000002680)	CCDC22 (ENSSHAG00000029776)	CACNA1F (ENSSHAG00000001197)	SYP (ENSSHAG00000025026)	ENSSHAG00000004508	ENSSHAG00000027473	ENSSHAG00000031604	TFE3 (ENSSHAG00000003327)	GRIPAP1 (ENSSHAG00000003080)	ENSSHAG00000002843 #22	PIM2 (ENSSHAG00000022404)	OTUD5 (ENSSHAG00000024529)	ENSSHAG00000021727	ENSSHAG00000001555	ENSSHAG00000021486	ENSSHAG00000021720	ENSSHAG00000001040	ENSSHAG00000001709	ENSSHAG00000032369	ENSSHAG00000000940	ENSSHAG00000002882	ENSSHAG00000022637	ENSSHAG00000000138	ENSSHAG00000001207	ENSSHAG00000028465
Diprotodontia	ANCESTRAL SPECIES	28	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000159667	ENSGT00940000164196.g	ENSGT00890000139436.A.b	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Wallaby	MODERN SPECIES	9053																ENSMEUG00000002717 #22
Diprotodontia_a	ANCESTRAL SPECIES	27	ENSGT00940000155170	ENSGT00390000010825.a	ENSGT00940000159667	ENSGT00940000164196.g	ENSGT00890000139436.A.b	ENSGT00390000013859	ENSGT00940000161807	ENSGT00390000003809	ENSGT00940000159855	ENSGT01030000234637.b.c	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163928 #32	ENSGT00940000163382 #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00390000014326 #36	ENSGT00390000008099.yb #37	ENSGT00940000157073
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	685											ENSVURG00010023766	ENSVURG00010023770	ENSVURG00010023774	ENSVURG00010023779	ENSVURG00010023782	KCND2 (ENSVURG00010023786) #22	TSPAN12 (ENSVURG00010023791) #23	ING3 (ENSVURG00010023795) #24	CPED1 (ENSVURG00010023799) #25	WNT16 (ENSVURG00010023806) #26	FAM3C (ENSVURG00010023808) #27	PTPRZ1 (ENSVURG00010023813) #28	AASS (ENSVURG00010023818) #29	FEZF1 (ENSVURG00010023820) #30	CADPS2 (ENSVURG00010023830) #31	RNF133 (ENSVURG00010023853) #32	ENSVURG00010023854 #35	IQUB (ENSVURG00010023856) #36	ENSVURG00010023859 #37	ASB15 (ENSVURG00010023863)	LMOD2 (ENSVURG00010023872)
Common wonbat	MODERN SPECIES	1079		ENSVURG00010021180	ENSVURG00010021171	ENSVURG00010021134	GPR173 (ENSVURG00010021126)	ENSVURG00010021119	FOXP3 (ENSVURG00010021112)	CCDC22 (ENSVURG00010021103)	CACNA1F (ENSVURG00010011168)	SYP (ENSVURG00010010730)	PRICKLE3 (ENSVURG00010010711)	ENSVURG00010010696	CCDC120 (ENSVURG00010010671)	TFE3 (ENSVURG00010010649)	GRIPAP1 (ENSVURG00010010555)	ENSVURG00010010519 #22	ENSVURG00010010507	PIM2 (ENSVURG00010010500)	SLC35A2 (ENSVURG00010010497)	ENSVURG00010010494	TIMM17B (ENSVURG00010010486)	CDK20 (ENSVURG00010010475)	GATA1 (ENSVURG00010010465)	HDAC6 (ENSVURG00010010455)	PORCN (ENSVURG00010010369)	EBP (ENSVURG00010010353)	TBC1D25 (ENSVURG00010010343)	SLC38A5 (ENSVURG00010010329)	WAS (ENSVURG00010010322)	ENSVURG00010010306	ABT1 (ENSVURG00010010299)
koala	DUPLICATION
koala	MODERN SPECIES	166														ENSPCIG00000024458	ENSPCIG00000036499	KCND2 (ENSPCIG00000036542) #22	TSPAN12 (ENSPCIG00000006234) #23	ING3 (ENSPCIG00000024863) #24	CPED1 (ENSPCIG00000011081) #25	WNT16 (ENSPCIG00000011079) #26	FAM3C (ENSPCIG00000011074) #27	PTPRZ1 (ENSPCIG00000013887) #28	AASS (ENSPCIG00000013881) #29	FEZF1 (ENSPCIG00000025669) #30	CADPS2 (ENSPCIG00000025670) #31	RNF133 (ENSPCIG00000024797) #32	RNF148 (ENSPCIG00000024798) #33	SLC13A1 (ENSPCIG00000024800) #35	IQUB (ENSPCIG00000026660) #36	ASB15 (ENSPCIG00000008779)	LMOD2 (ENSPCIG00000008782)
koala	MODERN SPECIES	294	HSD17B10 (ENSPCIG00000013010)	ENSPCIG00000013007	IQSEC2 (ENSPCIG00000014460)	ENSPCIG00000014467	GPR173 (ENSPCIG00000014470)	ENSPCIG00000014472	FOXP3 (ENSPCIG00000014474)	CCDC22 (ENSPCIG00000014475)	CACNA1F (ENSPCIG00000005925)	SYP (ENSPCIG00000027881)	PRICKLE3 (ENSPCIG00000027884)	PLP2 (ENSPCIG00000027886)	CCDC120 (ENSPCIG00000027887)	TFE3 (ENSPCIG00000027889)	GRIPAP1 (ENSPCIG00000027893)	ENSPCIG00000027895 #22	OTUD5 (ENSPCIG00000027896)	PIM2 (ENSPCIG00000027897)	ENSPCIG00000027902	ENSPCIG00000027905	TIMM17B (ENSPCIG00000027908)	CDK20 (ENSPCIG00000027909)	GATA1 (ENSPCIG00000027911)	HDAC6 (ENSPCIG00000027912)	PORCN (ENSPCIG00000027915)	EBP (ENSPCIG00000027919)	TBC1D25 (ENSPCIG00000027924)	SLC38A5 (ENSPCIG00000007378)	ENSPCIG00000007542	SUV39H1 (ENSPCIG00000007547)	WDR13 (ENSPCIG00000007549)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	1	MDFIC (ENSOANG00000044059) #7	TFEC (ENSOANG00000014094) #8	TES (ENSOANG00000014092) #9	ENSOANG00000036116 #10	CAV1 (ENSOANG00000048557) #11	MET (ENSOANG00000015031) #12	CAPZA2 (ENSOANG00000038071) #13	ST7 (ENSOANG00000008765) #14	WNT2 (ENSOANG00000008766) #16	ASZ1 (ENSOANG00000031342) #18	CFTR (ENSOANG00000008767) #17	CTTNBP2 (ENSOANG00000021090) #19	LSM8 (ENSOANG00000049504) #20	ENSOANG00000008771	ENSOANG00000011984	ENSOANG00000039010 #22	TSPAN12 (ENSOANG00000049624) #23	ING3 (ENSOANG00000043175) #24	CPED1 (ENSOANG00000005654) #25	WNT16 (ENSOANG00000005655) #26	FAM3C (ENSOANG00000051321) #27	PTPRZ1 (ENSOANG00000004821) #28	AASS (ENSOANG00000004822) #29	FEZF1 (ENSOANG00000041502) #30	CADPS2 (ENSOANG00000004823) #31	RNF133 (ENSOANG00000015935) #32	ENSOANG00000039363 #33	SLC13A1 (ENSOANG00000004824) #35	ENSOANG00000004825	ENSOANG00000004826 #36	NDUFA5 (ENSOANG00000004827) #37
Platypus	MODERN SPECIES	17	IQSEC2 (ENSOANG00000005666)	ENSOANG00000013587	ENSOANG00000038317	GPR173 (ENSOANG00000038762)	ENSOANG00000013585	FOXP3 (ENSOANG00000013584)	CCDC22 (ENSOANG00000013583)	CACNA1F (ENSOANG00000013580)	SYP (ENSOANG00000047567)	PRICKLE3 (ENSOANG00000013579)	PLP2 (ENSOANG00000013578)	ENSOANG00000013577	WDR45 (ENSOANG00000044470)	TFE3 (ENSOANG00000013574)	GRIPAP1 (ENSOANG00000051019)	ENSOANG00000013573 #22	OTUD5 (ENSOANG00000043640)	ENSOANG00000038972	SLC35A2 (ENSOANG00000048927)	PQBP1 (ENSOANG00000031396)	TIMM17B (ENSOANG00000014281)	CDK20 (ENSOANG00000010766)	GATA1 (ENSOANG00000010765)	HDAC6 (ENSOANG00000002256)	ENSOANG00000047880	PORCN (ENSOANG00000005775)	EBP (ENSOANG00000012972)	TBC1D25 (ENSOANG00000038580)	ENSOANG00000014584	SLC38A5 (ENSOANG00000036935)	WAS (ENSOANG00000015230)
Sauria	ANCESTRAL SPECIES	4	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00940000153629.a.b	ENSGT00940000158528	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382.a #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Lepidosauria	ANCESTRAL SPECIES	31	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382.a #33	ENSGT00990000210432	ENSGT00940000163382.b #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36
tuatara	DUPLICATION
tuatara	MODERN SPECIES	209																KCND2 (ENSSPUG00000006490) #22	TSPAN12 (ENSSPUG00000006520) #23	ING3 (ENSSPUG00000006536) #24	CPED1 (ENSSPUG00000006552) #25	WNT16 (ENSSPUG00000006570) #26	FAM3C (ENSSPUG00000006588) #27	ENSSPUG00000006610 #28	ENSSPUG00000006634 #28	AASS (ENSSPUG00000006687) #29	CADPS2 (ENSSPUG00000006819) #31
tuatara	MODERN SPECIES	1338						PLP2 (ENSSPUG00000005718)	ENSSPUG00000005706	ENSSPUG00000005699	ENSSPUG00000005686	GATA1 (ENSSPUG00000005680)	CDK20 (ENSSPUG00000005620)	TIMM17B (ENSSPUG00000005579)	CCDC120 (ENSSPUG00000005552)	ENSSPUG00000005543	GRIPAP1 (ENSSPUG00000005484)	ENSSPUG00000005449 #22
Episquamata	ANCESTRAL SPECIES	23	ENSGT00940000153634.a	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000161233	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00940000166825	ENSGT00730000111146	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT00940000164755.C	ENSGT00940000158528	ENSGT00940000153629.a.b	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00880000138051.a #18	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216.a #25	ENSGT00390000015216.b #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00940000163382.a #33	ENSGT00940000163382.b #33	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36
Elapidae	ANCESTRAL SPECIES	21	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000161233	ENSGT00940000159173	ENSGT00530000063715.a.s	ENSGT01030000234564.a.a.b.a	ENSGT00530000063715.a.t	ENSGT00940000166825	ENSGT00730000111146	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT00940000164755.C	ENSGT00940000158528	ENSGT00940000153629.a.b	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00940000153634.a	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000161233	ENSGT00940000159173	ENSGT00530000063715.a.s	ENSGT01030000234564.a.a.b.a	ENSGT00530000063715.a.t	ENSGT00730000111146	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT00940000164755.C	ENSGT00940000158528	ENSGT00940000153629.a.b	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	6336																KCND2 (ENSLLTG00000014711) #22
Blue-lipped sea krait	MODERN SPECIES	333														TFE3 (ENSLLTG00000000775)	GRIPAP1 (ENSLLTG00000000703)	ENSLLTG00000000661 #22	OTUD5 (ENSLLTG00000000645)	PIM2 (ENSLLTG00000000630)	SLC35A2 (ENSLLTG00000000619)	PQBP1 (ENSLLTG00000000605)	TIMM17B (ENSLLTG00000000590)	ENSLLTG00000000502
Acanthophiinae	ANCESTRAL SPECIES	57	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT01010000230279	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b.a #14	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00940000153661	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216.a #25	ENSGT01000000221730	ENSGT00390000015216.b #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	26	TFEC (ENSNSUG00000013167) #8	ENSNSUG00000013166	TES (ENSNSUG00000013165) #9	CAV2 (ENSNSUG00000013164) #10	CAV1 (ENSNSUG00000013163) #11	MET (ENSNSUG00000012872) #12	CAPZA2 (ENSNSUG00000012669) #13	ST7 (ENSNSUG00000012058) #14	ENSNSUG00000012057 #18	CFTR (ENSNSUG00000012053) #17	CTTNBP2 (ENSNSUG00000012041) #19	LSM8 (ENSNSUG00000012040) #20	ENSNSUG00000012038	ENSNSUG00000012035	ENSNSUG00000012034	KCND2 (ENSNSUG00000012032) #22	TSPAN12 (ENSNSUG00000012031) #23	ING3 (ENSNSUG00000012030) #24	ENSNSUG00000012029	CPED1 (ENSNSUG00000012028) #25	WNT16 (ENSNSUG00000012027) #26	FAM3C (ENSNSUG00000012026) #27	PTPRZ1 (ENSNSUG00000012025) #28	AASS (ENSNSUG00000011865) #29	FEZF1 (ENSNSUG00000011831) #30	ENSNSUG00000011827 #33	ENSNSUG00000011825 #33	CADPS2 (ENSNSUG00000011811) #31	SLC13A1 (ENSNSUG00000011433) #35	ENSNSUG00000011430	IQUB (ENSNSUG00000011425) #36
Mainland tiger snake	MODERN SPECIES	81	WDR13 (ENSNSUG00000000218)	SUV39H1 (ENSNSUG00000000131)	WAS (ENSNSUG00000000092)	SLC38A5 (ENSNSUG00000000035)	TBC1D25 (ENSNSUG00000000006)	ENSNSUG00000019865	PORCN (ENSNSUG00000019834)	ENSNSUG00000019833	FTSJ1 (ENSNSUG00000019832)	GPKOW (ENSNSUG00000019831)	WDR45 (ENSNSUG00000019830)	PRAF2 (ENSNSUG00000019829)	CCDC120 (ENSNSUG00000019828)	TFE3 (ENSNSUG00000019827)	GRIPAP1 (ENSNSUG00000019826)	ENSNSUG00000019825 #22	OTUD5 (ENSNSUG00000019824)	PIM2 (ENSNSUG00000019823)	SLC35A2 (ENSNSUG00000019797)	PQBP1 (ENSNSUG00000019794)	TIMM17B (ENSNSUG00000019793)	ENSNSUG00000019792	ENSNSUG00000019790	ENSNSUG00000019789	GATA1 (ENSNSUG00000019787)	HDAC6 (ENSNSUG00000019782)	ENSNSUG00000019776	ENSNSUG00000019772	ENSNSUG00000019770	ENSNSUG00000019769	PRICKLE3 (ENSNSUG00000019767)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	58	PPP1R3A (ENSPTXG00000011875)	FOXP2 (ENSPTXG00000011565)	MDFIC (ENSPTXG00000011560) #7	ENSPTXG00000011556	TES (ENSPTXG00000011554) #9	CAV1 (ENSPTXG00000011551) #11	MET (ENSPTXG00000011531) #12	CAPZA2 (ENSPTXG00000011530) #13	ST7 (ENSPTXG00000010536) #14	ASZ1 (ENSPTXG00000010523) #18	CFTR (ENSPTXG00000010072) #17	CTTNBP2 (ENSPTXG00000010062) #19	LSM8 (ENSPTXG00000010061) #20	ENSPTXG00000010059	ENSPTXG00000010051	ENSPTXG00000010050 #22	TSPAN12 (ENSPTXG00000010049) #23	ING3 (ENSPTXG00000010048) #24	ENSPTXG00000010047 #25	ENSPTXG00000010046 #25	WNT16 (ENSPTXG00000010045) #26	FAM3C (ENSPTXG00000010044) #27
Eastern brown snake	MODERN SPECIES	52	SUV39H1 (ENSPTXG00000008273)	WAS (ENSPTXG00000008271)	SLC38A5 (ENSPTXG00000008266)	TBC1D25 (ENSPTXG00000008263)	ENSPTXG00000008261	PORCN (ENSPTXG00000008260)	ENSPTXG00000008259	ENSPTXG00000008258	FTSJ1 (ENSPTXG00000008257)	GPKOW (ENSPTXG00000008255)	WDR45 (ENSPTXG00000008253)	PRAF2 (ENSPTXG00000008251)	CCDC120 (ENSPTXG00000008213)	TFE3 (ENSPTXG00000008211)	GRIPAP1 (ENSPTXG00000008207)	ENSPTXG00000008205 #22	OTUD5 (ENSPTXG00000008201)	PIM2 (ENSPTXG00000008198)	SLC35A2 (ENSPTXG00000008196)	PQBP1 (ENSPTXG00000008194)	TIMM17B (ENSPTXG00000008191)	ENSPTXG00000008189	CDK20 (ENSPTXG00000008188)	GATA1 (ENSPTXG00000008186)	HDAC6 (ENSPTXG00000007959)	ENSPTXG00000007920	ENSPTXG00000007914	PRICKLE3 (ENSPTXG00000007910)	ALAS2 (ENSPTXG00000007906)	APEX2 (ENSPTXG00000007903)	PFKFB1 (ENSPTXG00000007895)
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	10	ENSNNAG00000008019	TES (ENSNNAG00000007976) #9	CAV2 (ENSNNAG00000007961) #10	CAV1 (ENSNNAG00000007947) #11	ENSNNAG00000007381 #12	ENSNNAG00000007335 #12	ENSNNAG00000007327 #12	CAPZA2 (ENSNNAG00000007317) #13	ST7 (ENSNNAG00000006862) #14	ASZ1 (ENSNNAG00000006732) #18	CFTR (ENSNNAG00000006666) #17	CTTNBP2 (ENSNNAG00000006600) #19	LSM8 (ENSNNAG00000006583) #20	ENSNNAG00000006556	ENSNNAG00000006538	KCND2 (ENSNNAG00000006526) #22	TSPAN12 (ENSNNAG00000006500) #23	ING3 (ENSNNAG00000006488) #24	ENSNNAG00000006479	ENSNNAG00000006451 #25	WNT16 (ENSNNAG00000006418) #26	FAM3C (ENSNNAG00000006396) #27	PTPRZ1 (ENSNNAG00000006362) #28	AASS (ENSNNAG00000006311) #29	FEZF1 (ENSNNAG00000006291) #30	ENSNNAG00000006281 #33	ENSNNAG00000006263	ENSNNAG00000006247 #33	CADPS2 (ENSNNAG00000006131) #31	ENSNNAG00000006096 #35	ENSNNAG00000006069
Indian cobra	MODERN SPECIES	1	SUV39H1 (ENSNNAG00000009353)	WAS (ENSNNAG00000009371)	SLC38A5 (ENSNNAG00000009453)	TBC1D25 (ENSNNAG00000010438)	ENSNNAG00000010495	PORCN (ENSNNAG00000010535)	ENSNNAG00000010633	ENSNNAG00000010677	FTSJ1 (ENSNNAG00000010700)	GPKOW (ENSNNAG00000010730)	WDR45 (ENSNNAG00000010759)	PRAF2 (ENSNNAG00000010800)	CCDC120 (ENSNNAG00000010874)	TFE3 (ENSNNAG00000010930)	GRIPAP1 (ENSNNAG00000010983)	ENSNNAG00000011249 #22	OTUD5 (ENSNNAG00000011281)	PIM2 (ENSNNAG00000011316)	SLC35A2 (ENSNNAG00000011331)	PQBP1 (ENSNNAG00000011352)	TIMM17B (ENSNNAG00000011378)	ENSNNAG00000011393	CDK20 (ENSNNAG00000011421)	GATA1 (ENSNNAG00000011453)	HDAC6 (ENSNNAG00000011493)	ENSNNAG00000011607	ENSNNAG00000011654	PRICKLE3 (ENSNNAG00000011671)	ENSNNAG00000011726	APEX2 (ENSNNAG00000011774)	PFKFB1 (ENSNNAG00000011906)
Lizard	DUPLICATION
Lizard	MODERN SPECIES	4	CAPZA2 (ENSACAG00000008196) #13	ST7 (ENSACAG00000008154) #14	ASZ1 (ENSACAG00000008056) #18	CFTR (ENSACAG00000007652) #17	ENSACAG00000039700	ENSACAG00000037242	ENSACAG00000035958	ENSACAG00000037108 #19	ENSACAG00000040576	ENSACAG00000007252 #19	ENSACAG00000039034	ENSACAG00000037922 #20	ENSACAG00000007246	ENSACAG00000041568 #20	ENSACAG00000007208	KCND2 (ENSACAG00000007207) #22	TSPAN12 (ENSACAG00000007124) #23	ENSACAG00000007094	ING3 (ENSACAG00000007047) #24	CPED1 (ENSACAG00000007000) #25	ENSACAG00000044040	MLC1 (ENSACAG00000002373)	MOV10L1 (ENSACAG00000002357)	PANX2 (ENSACAG00000002347)	ENSACAG00000027919	TRABD (ENSACAG00000002304)	SELENOO (ENSACAG00000002256)	ENSACAG00000037139	TUBGCP6 (ENSACAG00000002182)	HDAC10 (ENSACAG00000002041)	ENSACAG00000029666
Lizard	MODERN SPECIES	940	ENSACAG00000016695	ENSACAG00000016668	ENSACAG00000034941	ENSACAG00000043742	ENSACAG00000023138	ENSACAG00000029101	ENSACAG00000016650	ENSACAG00000016615	ENSACAG00000016605	GPKOW (ENSACAG00000016598)	WDR45 (ENSACAG00000016580)	PRAF2 (ENSACAG00000016575)	CCDC120 (ENSACAG00000016561)	TFE3 (ENSACAG00000022140)	GRIPAP1 (ENSACAG00000016477)	ENSACAG00000007541 #22	OTUD5 (ENSACAG00000007596)	PIM2 (ENSACAG00000007632)	SLC35A2 (ENSACAG00000007702)	PQBP1 (ENSACAG00000007728)	ENSACAG00000029157
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000153634.a	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000161233	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00940000166825	ENSGT00730000111146	ENSGT00390000015154	ENSGT00940000155657	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00990000203541.b	ENSGT00940000164755.C	ENSGT00940000158528	ENSGT00940000153629.a.b	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	15	ENSSMRG00000012670	ENSSMRG00000012664	FOXP2 (ENSSMRG00000012648)	MDFIC (ENSSMRG00000012630) #7	TFEC (ENSSMRG00000012616) #8	TES (ENSSMRG00000012594) #9	CAV2 (ENSSMRG00000012573) #10	CAV1 (ENSSMRG00000012572) #11	MET (ENSSMRG00000012570) #12	CAPZA2 (ENSSMRG00000012563) #13	ST7 (ENSSMRG00000012559) #14	ASZ1 (ENSSMRG00000012548) #18	CFTR (ENSSMRG00000012377) #17	CTTNBP2 (ENSSMRG00000012375) #19	ENSSMRG00000012339	KCND2 (ENSSMRG00000012315) #22	TSPAN12 (ENSSMRG00000012286) #23	ING3 (ENSSMRG00000012275) #24	CPED1 (ENSSMRG00000012271) #25	WNT16 (ENSSMRG00000012269) #26	FAM3C (ENSSMRG00000012268) #27	PTPRZ1 (ENSSMRG00000012253) #28	AASS (ENSSMRG00000012237) #29	FEZF1 (ENSSMRG00000012236) #30	RNF148 (ENSSMRG00000012235) #33	CADPS2 (ENSSMRG00000012230) #31	ENSSMRG00000012149 #35	ENSSMRG00000012131	IQUB (ENSSMRG00000012124) #36	NDUFA5 (ENSSMRG00000012122) #37	ASB15 (ENSSMRG00000012120)
Argentine black and white tegu	MODERN SPECIES	12	ENSSMRG00000019264	WDR13 (ENSSMRG00000019261)	SUV39H1 (ENSSMRG00000019258)	SLC38A5 (ENSSMRG00000019251)	TBC1D25 (ENSSMRG00000019248)	EBP (ENSSMRG00000019246)	PORCN (ENSSMRG00000019245)	ENSSMRG00000019244	FTSJ1 (ENSSMRG00000019243)	GPKOW (ENSSMRG00000019242)	WDR45 (ENSSMRG00000019241)	PRAF2 (ENSSMRG00000019240)	CCDC120 (ENSSMRG00000019239)	TFE3 (ENSSMRG00000019237)	GRIPAP1 (ENSSMRG00000019236)	ENSSMRG00000019235 #22	OTUD5 (ENSSMRG00000019233)	PIM2 (ENSSMRG00000019232)	SLC35A2 (ENSSMRG00000019231)	PQBP1 (ENSSMRG00000019230)	TIMM17B (ENSSMRG00000019229)	ENSSMRG00000019228	CDK20 (ENSSMRG00000019227)	ENSSMRG00000019226	HDAC6 (ENSSMRG00000019223)	ENSSMRG00000019221	ENSSMRG00000019220	ENSSMRG00000019219 #7	ENSSMRG00000019211	PFKFB1 (ENSSMRG00000019210)	APEX2 (ENSSMRG00000019209)
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	1	FOXP2 (ENSPMRG00000010845)	MDFIC (ENSPMRG00000010831) #7	TFEC (ENSPMRG00000010811) #8	TES (ENSPMRG00000010792) #9	CAV2 (ENSPMRG00000010787) #10	CAV1 (ENSPMRG00000010783) #11	MET (ENSPMRG00000010518) #12	CAPZA2 (ENSPMRG00000010465) #13	ST7 (ENSPMRG00000010415) #14	ASZ1 (ENSPMRG00000010379) #18	CFTR (ENSPMRG00000010360) #17	CTTNBP2 (ENSPMRG00000010336) #19	ENSPMRG00000010327	ENSPMRG00000010321	ENSPMRG00000010282	KCND2 (ENSPMRG00000010278) #22	ENSPMRG00000010273	TSPAN12 (ENSPMRG00000010270) #23	ING3 (ENSPMRG00000010234) #24	CPED1 (ENSPMRG00000010212) #25	WNT16 (ENSPMRG00000010203) #26	FAM3C (ENSPMRG00000010201) #27	PTPRZ1 (ENSPMRG00000010174) #28	AASS (ENSPMRG00000013742) #29	FEZF1 (ENSPMRG00000013731) #30	RNF148 (ENSPMRG00000013725) #33	ENSPMRG00000013722	CADPS2 (ENSPMRG00000013638) #31	SLC13A1 (ENSPMRG00000013622) #35	ENSPMRG00000013616	IQUB (ENSPMRG00000013610) #36
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000018667	SLC38A5 (ENSPMRG00000018673)	ENSPMRG00000018683	ENSPMRG00000018690	EBP (ENSPMRG00000018698)	PORCN (ENSPMRG00000018707)	ENSPMRG00000018717	FTSJ1 (ENSPMRG00000018723)	GPKOW (ENSPMRG00000018732)	WDR45 (ENSPMRG00000018757)	PRAF2 (ENSPMRG00000018857)	ENSPMRG00000018863	CCDC120 (ENSPMRG00000018879)	TFE3 (ENSPMRG00000018894)	GRIPAP1 (ENSPMRG00000018908)	ENSPMRG00000018926 #22	SLC35A2 (ENSPMRG00000018937)	OTUD5 (ENSPMRG00000018946)	PIM2 (ENSPMRG00000018956)	PQBP1 (ENSPMRG00000018963)	TIMM17B (ENSPMRG00000018977)	ENSPMRG00000018984	CDK20 (ENSPMRG00000018996)	GATA1 (ENSPMRG00000019007)	ENSPMRG00000019014	HDAC6 (ENSPMRG00000019050)	ENSPMRG00000019180	ENSPMRG00000019185 #7	ENSPMRG00000019191	ENSPMRG00000019200	PRICKLE3 (ENSPMRG00000019210)
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382.a #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382.a #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Chinese turtle	MODERN SPECIES	1049	TFEC (ENSPSIG00000015144) #8	TES (ENSPSIG00000015274) #9	CAV2 (ENSPSIG00000015283) #10	MET (ENSPSIG00000015326) #12	CAPZA2 (ENSPSIG00000016176) #13	ST7 (ENSPSIG00000016187) #14	WNT2 (ENSPSIG00000016584) #16	ASZ1 (ENSPSIG00000016815) #18	CFTR (ENSPSIG00000016860) #17	CTTNBP2 (ENSPSIG00000017035) #19	LSM8 (ENSPSIG00000017054) #20	ENSPSIG00000017066	ENSPSIG00000017169	ENSPSIG00000017191	ENSPSIG00000001336	KCND2 (ENSPSIG00000006329) #22	ENSPSIG00000001347	ENSPSIG00000006333	TSPAN12 (ENSPSIG00000006353) #23	ING3 (ENSPSIG00000006786) #24	CPED1 (ENSPSIG00000006819) #25	WNT16 (ENSPSIG00000007055) #26	FAM3C (ENSPSIG00000007088) #27	PTPRZ1 (ENSPSIG00000007851) #28	AASS (ENSPSIG00000008076) #29	FEZF1 (ENSPSIG00000009843) #30	CADPS2 (ENSPSIG00000010156) #31	SLC13A1 (ENSPSIG00000011581) #35	ENSPSIG00000012174	IQUB (ENSPSIG00000012185) #36	NDUFA5 (ENSPSIG00000012270) #37
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382.a #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Emydidae	ANCESTRAL SPECIES	59															ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00940000155657	ENSGT00950000182835.c.c	ENSGT00940000162980	ENSGT00940000155877	ENSGT00940000160145.b.hb	ENSGT00530000063168.a.a.b	ENSGT00940000157847
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	28	FOXP2 (ENSTMTG00000008222)	MDFIC (ENSTMTG00000008157) #7	TFEC (ENSTMTG00000008131) #8	TES (ENSTMTG00000008115) #9	CAV2 (ENSTMTG00000008104) #10	CAV1 (ENSTMTG00000008094) #11	MET (ENSTMTG00000007665) #12	CAPZA2 (ENSTMTG00000007614) #13	ST7 (ENSTMTG00000007597) #14	WNT2 (ENSTMTG00000007579) #16	ASZ1 (ENSTMTG00000007462) #18	CFTR (ENSTMTG00000006673) #17	CTTNBP2 (ENSTMTG00000006565) #19	ENSTMTG00000006508	ENSTMTG00000006488	KCND2 (ENSTMTG00000006474) #22	TSPAN12 (ENSTMTG00000006457) #23	ING3 (ENSTMTG00000006434) #24	CPED1 (ENSTMTG00000006179) #25	WNT16 (ENSTMTG00000006146) #26	FAM3C (ENSTMTG00000006113) #27	PTPRZ1 (ENSTMTG00000006041) #28	AASS (ENSTMTG00000005973) #29	FEZF1 (ENSTMTG00000005956) #30	RNF148 (ENSTMTG00000005937) #33	ENSTMTG00000005924	CADPS2 (ENSTMTG00000005774) #31	ENSTMTG00000005746 #35	ENSTMTG00000005720	IQUB (ENSTMTG00000005679) #36	NDUFA5 (ENSTMTG00000005661) #37
Three-toed box turtle	MODERN SPECIES	290																ENSTMTG00000011612 #22
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	7	TES (ENSCPBG00000007139) #9	CAV2 (ENSCPBG00000007156) #10	CAV1 (ENSCPBG00000007159) #11	MET (ENSCPBG00000007168) #12	CAPZA2 (ENSCPBG00000007179) #13	ST7 (ENSCPBG00000007194) #14	WNT2 (ENSCPBG00000007227) #16	ASZ1 (ENSCPBG00000007263) #18	CFTR (ENSCPBG00000007379) #17	ENSCPBG00000008123 #19	ENSCPBG00000008135 #19	LSM8 (ENSCPBG00000008154) #20	ENSCPBG00000008183	ENSCPBG00000008248	ENSCPBG00000008257	KCND2 (ENSCPBG00000008266) #22	ENSCPBG00000008270	TSPAN12 (ENSCPBG00000008296) #23	ING3 (ENSCPBG00000008307) #24	ENSCPBG00000008316 #25	WNT16 (ENSCPBG00000008323) #26	FAM3C (ENSCPBG00000008326) #27	PTPRZ1 (ENSCPBG00000008360) #28	AASS (ENSCPBG00000008417) #29	FEZF1 (ENSCPBG00000008446) #30	CADPS2 (ENSCPBG00000008933) #31	RNF148 (ENSCPBG00000020629) #33	SLC13A1 (ENSCPBG00000020633) #35	ENSCPBG00000020639	IQUB (ENSCPBG00000020650) #36	NDUFA5 (ENSCPBG00000020662) #37
painted turtle	MODERN SPECIES	1022															GRIPAP1 (ENSCPBG00000017481)	ENSCPBG00000017477 #22	OTUD5 (ENSCPBG00000017475)	PIM2 (ENSCPBG00000017474)	SLC35A2 (ENSCPBG00000017464)	PQBP1 (ENSCPBG00000017461)	TIMM17B (ENSCPBG00000017459)	CDK20 (ENSCPBG00000017458)	GATA1 (ENSCPBG00000017455)	HDAC6 (ENSCPBG00000017452)	WDR45 (ENSCPBG00000017434)	PFKFB1 (ENSCPBG00000017423)	ITIH6 (ENSCPBG00000017418)	GNL3L (ENSCPBG00000017415)	WNK3 (ENSCPBG00000017411)	FAM120C (ENSCPBG00000017405)	ENSCPBG00000017404
Testudinidae	ANCESTRAL SPECIES	46										ENSGT00940000162821	ENSGT00890000139436.A.b	ENSGT00390000013859	ENSGT00390000003809	ENSGT00940000159855	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e	ENSGT00940000159128	ENSGT00940000161156	ENSGT00940000159563	ENSGT00940000155657	ENSGT00950000182835.c.c	ENSGT00940000162980	ENSGT00390000003348	ENSGT00940000155877	ENSGT00940000159438	ENSGT00390000012692
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES		MDFIC (ENSGEVG00005020132) #7	ENSGEVG00005020137	TFEC (ENSGEVG00005020144) #8	TES (ENSGEVG00005020153) #9	CAV2 (ENSGEVG00005020161) #10	CAV1 (ENSGEVG00005020165) #11	MET (ENSGEVG00005020173) #12	CAPZA2 (ENSGEVG00005020187) #13	ENSGEVG00005020193	ST7 (ENSGEVG00005020215) #14	WNT2 (ENSGEVG00005020248) #16	ASZ1 (ENSGEVG00005020255) #18	CFTR (ENSGEVG00005020286) #17	LSM8 (ENSGEVG00005020340) #20	ENSGEVG00005020349	KCND2 (ENSGEVG00005020370) #22	TSPAN12 (ENSGEVG00005020373) #23	ING3 (ENSGEVG00005020379) #24	ENSGEVG00005020382 #25	ENSGEVG00005020385 #25	WNT16 (ENSGEVG00005020388) #26	FAM3C (ENSGEVG00005020393) #27	PTPRZ1 (ENSGEVG00005020397) #28	AASS (ENSGEVG00005020403) #29	FEZF1 (ENSGEVG00005020406) #30	CADPS2 (ENSGEVG00005020416) #31	RNF148 (ENSGEVG00005020434) #33	ENSGEVG00005020438 #35	ENSGEVG00005020458	IQUB (ENSGEVG00005020462) #36	ENSGEVG00005020466 #37
Goode s thornscrub tortoise	MODERN SPECIES	201									ENSGEVG00005017856	GPR173 (ENSGEVG00005017796)	ENSGEVG00005017775	CCDC22 (ENSGEVG00005017725)	ENSGEVG00005017598	ENSGEVG00005017543	GRIPAP1 (ENSGEVG00005017492)	ENSGEVG00005017449 #22	OTUD5 (ENSGEVG00005017433)	PIM2 (ENSGEVG00005017389)	SLC35A2 (ENSGEVG00005017378)	PQBP1 (ENSGEVG00005017360)	TIMM17B (ENSGEVG00005017346)	CDK20 (ENSGEVG00005017330)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1938																KCND2 (ENSCABG00000010268) #22	TSPAN12 (ENSCABG00000010271) #23	ING3 (ENSCABG00000010272) #24	ENSCABG00000010273 #25	ENSCABG00000010274 #25	WNT16 (ENSCABG00000010277) #26	FAM3C (ENSCABG00000010280) #27	UBR2 (ENSCABG00000010309)	PRPH2 (ENSCABG00000012959)	ENSCABG00000012960
Abingdon island giant tortoise	MODERN SPECIES	643													ENSCABG00000015462	ENSCABG00000014703	GRIPAP1 (ENSCABG00000014673)	ENSCABG00000014671 #22	PIM2 (ENSCABG00000014669)	SLC35A2 (ENSCABG00000014529)	PQBP1 (ENSCABG00000014524)	TIMM17B (ENSCABG00000014523)	CDK20 (ENSCABG00000014521)	GATA1 (ENSCABG00000014518)	HDAC6 (ENSCABG00000014483)	ENSCABG00000014472	PFKFB1 (ENSCABG00000014470)	ITIH6 (ENSCABG00000014464)	FGD1 (ENSCABG00000014438)	TSR2 (ENSCABG00000014424)	WNK3 (ENSCABG00000014379)	ENSCABG00000014370
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT00940000163382.a #33	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073
Australian saltwater crocodile	MODERN SPECIES	49	TES (ENSCPRG00005010118) #9	CAV2 (ENSCPRG00005010121) #10	CAV1 (ENSCPRG00005010126) #11	MET (ENSCPRG00005010146) #12	CAPZA2 (ENSCPRG00005010284) #13	ENSCPRG00005010321	ST7 (ENSCPRG00005010327) #14	WNT2 (ENSCPRG00005010348) #16	ASZ1 (ENSCPRG00005010351) #18	CFTR (ENSCPRG00005010391) #17	CTTNBP2 (ENSCPRG00005010434) #19	LSM8 (ENSCPRG00005010480) #20	ENSCPRG00005010484	ENSCPRG00005010524	ENSCPRG00005010585	KCND2 (ENSCPRG00005010626) #22	TSPAN12 (ENSCPRG00005010654) #23	ING3 (ENSCPRG00005010662) #24	CPED1 (ENSCPRG00005010685) #25	WNT16 (ENSCPRG00005010718) #26	FAM3C (ENSCPRG00005010721) #27	ENSCPRG00005010728	PTPRZ1 (ENSCPRG00005010748) #28	AASS (ENSCPRG00005010757) #29	FEZF1 (ENSCPRG00005010783) #30	CADPS2 (ENSCPRG00005010813) #31	ENSCPRG00005010829	RNF148 (ENSCPRG00005010832) #33	ENSCPRG00005010846 #35	ENSCPRG00005010847	ENSCPRG00005010860
Aves	ANCESTRAL SPECIES	1	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT01030000238252	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
African ostrich	MODERN SPECIES	1053																KCND2 (ENSSCUG00000018768) #22	TSPAN12 (ENSSCUG00000018769) #23	ING3 (ENSSCUG00000018774) #24	CPED1 (ENSSCUG00000018779) #25	WNT16 (ENSSCUG00000018784) #26	FAM3C (ENSSCUG00000018786) #27	PTPRZ1 (ENSSCUG00000018788) #28	AASS (ENSSCUG00000018794) #29	FEZF1 (ENSSCUG00000018796) #30	CADPS2 (ENSSCUG00000018805) #31	SLC13A1 (ENSSCUG00000018818) #35	IQUB (ENSSCUG00000018822) #36	NDUFA5 (ENSSCUG00000018828) #37	ASB15 (ENSSCUG00000018829)	LMOD2 (ENSSCUG00000018831)	WASL (ENSSCUG00000018832)
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Japanese quail	MODERN SPECIES		ENSCJPG00005013359	FOXP2 (ENSCJPG00005012184)	MDFIC (ENSCJPG00005012181) #7	TFEC (ENSCJPG00005012178) #8	TES (ENSCJPG00005012177) #9	CAV2 (ENSCJPG00005012172) #10	CAV1 (ENSCJPG00005012171) #11	MET (ENSCJPG00005012168) #12	CAPZA2 (ENSCJPG00005012167) #13	ST7 (ENSCJPG00005012165) #14	WNT2 (ENSCJPG00005012164) #16	ASZ1 (ENSCJPG00005012161) #18	CFTR (ENSCJPG00005012155) #17	CTTNBP2 (ENSCJPG00005012154) #19	LSM8 (ENSCJPG00005012150) #20	KCND2 (ENSCJPG00005012143) #22	TSPAN12 (ENSCJPG00005012142) #23	ING3 (ENSCJPG00005012141) #24	ENSCJPG00005012139 #25	ENSCJPG00005012137 #25	POT1 (ENSCJPG00005012128)	GPR37 (ENSCJPG00005012127)	ENSCJPG00005012120	ENSCJPG00005012118	SPAM1 (ENSCJPG00005012116)	ENSCJPG00005012113	WASL (ENSCJPG00005012112)	LMOD2 (ENSCJPG00005012111)	ASB15 (ENSCJPG00005012110)	NDUFA5 (ENSCJPG00005012109) #37	IQUB (ENSCJPG00005012108) #36
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00960000189792	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Chicken	MODERN SPECIES		TFEC (ENSGALG00010001219) #8	TES (ENSGALG00010001214) #9	CAV2 (ENSGALG00010001517) #10	CAV1 (ENSGALG00010002285) #11	MET (ENSGALG00010001514) #12	CAPZA2 (ENSGALG00010001501) #13	ENSGALG00010001492	ST7 (ENSGALG00010002280) #14	WNT2 (ENSGALG00010001486) #16	ASZ1 (ENSGALG00010001207) #18	CFTR (ENSGALG00010001202) #17	CTTNBP2 (ENSGALG00010001200) #19	LSM8 (ENSGALG00010001456) #20	ANKRD26 (ENSGALG00010001443)	ENSGALG00010001421	KCND2 (ENSGALG00010001419) #22	TSPAN12 (ENSGALG00010001232) #23	ING3 (ENSGALG00010001349) #24	CPED1 (ENSGALG00010001320) #25	WNT16 (ENSGALG00010001305) #26	FAM3C (ENSGALG00010001264) #27	PTPRZ1 (ENSGALG00010001248) #28	AASS (ENSGALG00010001234) #29	ENSGALG00010001236	FEZF1 (ENSGALG00010001917) #30	CADPS2 (ENSGALG00010001745) #31	SLC13A1 (ENSGALG00010001714) #35	ATP6AP1 (ENSGALG00010001712)	IQUB (ENSGALG00010001706) #36	NDUFA5 (ENSGALG00010001701) #37	ASB15 (ENSGALG00010001699)
Turkey	MODERN SPECIES		MDFIC (ENSMGAG00000008984) #7	TFEC (ENSMGAG00000008979) #8	TES (ENSMGAG00000008969) #9	ENSMGAG00000017183	CAV1 (ENSMGAG00000008967) #11	ENSMGAG00000017415	MET (ENSMGAG00000008925) #12	CAPZA2 (ENSMGAG00000008904) #13	ST7 (ENSMGAG00000008883) #14	WNT2 (ENSMGAG00000008863) #16	ASZ1 (ENSMGAG00000008859) #18	CFTR (ENSMGAG00000008826) #17	LSM8 (ENSMGAG00000008808) #20	ENSMGAG00000008756	ENSMGAG00000016570	ENSMGAG00000018388 #22	ENSMGAG00000015683	TSPAN12 (ENSMGAG00000008725) #23	ING3 (ENSMGAG00000008695) #24	ENSMGAG00000021432	CPED1 (ENSMGAG00000008745) #25	WNT16 (ENSMGAG00000008679) #26	FAM3C (ENSMGAG00000008660) #27	PTPRZ1 (ENSMGAG00000008579) #28	AASS (ENSMGAG00000008535) #29	FEZF1 (ENSMGAG00000008529) #30	CADPS2 (ENSMGAG00000008495) #31	SLC13A1 (ENSMGAG00000008451) #35	ENSMGAG00000008443	IQUB (ENSMGAG00000008434) #36	ENSMGAG00000008411 #37
Anatidae	ANCESTRAL SPECIES	28																ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b.e #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Pink-footed goose	MODERN SPECIES	32																KCND2 (ENSABRG00000012789) #22	TSPAN12 (ENSABRG00000012798) #23	ING3 (ENSABRG00000012803) #24	CPED1 (ENSABRG00000012820) #25	WNT16 (ENSABRG00000012855) #26	FAM3C (ENSABRG00000012868) #27	PTPRZ1 (ENSABRG00000012900) #28	AASS (ENSABRG00000012966) #29	FEZF1 (ENSABRG00000012997) #30	CADPS2 (ENSABRG00000013030) #31	ENSABRG00000013133 #35	ENSABRG00000013134	IQUB (ENSABRG00000013138) #36	NDUFA5 (ENSABRG00000013142) #37	ASB15 (ENSABRG00000013148)	LMOD2 (ENSABRG00000013153)
Duck	MODERN SPECIES		TFEC (ENSAPLG00000012143) #8	TES (ENSAPLG00000012062) #9	CAV2 (ENSAPLG00000026342) #10	CAV1 (ENSAPLG00000001978) #11	MET (ENSAPLG00000010894) #12	CAPZA2 (ENSAPLG00000021156) #13	ST7 (ENSAPLG00000010396) #14	WNT2 (ENSAPLG00000003242) #16	ENSAPLG00000029683	CFTR (ENSAPLG00000011156) #17	CTTNBP2 (ENSAPLG00000010400) #19	ENSAPLG00000004753	LSM8 (ENSAPLG00000005115) #20	ENSAPLG00000027810	ENSAPLG00000017686	ENSAPLG00000031003 #22	ENSAPLG00000021328	TSPAN12 (ENSAPLG00000002596) #23	ING3 (ENSAPLG00000002016) #24	CPED1 (ENSAPLG00000000584) #25	WNT16 (ENSAPLG00000030369) #26	FAM3C (ENSAPLG00000016245) #27	PTPRZ1 (ENSAPLG00000015904) #28	AASS (ENSAPLG00000015230) #29	FEZF1 (ENSAPLG00000015055) #30	ENSAPLG00000031194 #31	ENSAPLG00000014404 #31	SLC13A1 (ENSAPLG00000013575) #35	ENSAPLG00000014367	IQUB (ENSAPLG00000014571) #36	NDUFA5 (ENSAPLG00000019976) #37
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216.l #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Kakapo	MODERN SPECIES	20	CAV2 (ENSSHBG00005010753) #10	CAV1 (ENSSHBG00005010735) #11	MET (ENSSHBG00005009888) #12	CAPZA2 (ENSSHBG00005009748) #13	ST7 (ENSSHBG00005009717) #14	WNT2 (ENSSHBG00005009667) #16	ASZ1 (ENSSHBG00005009632) #18	CFTR (ENSSHBG00005009547) #17	ENSSHBG00005009503	ENSSHBG00005009496 #19	ENSSHBG00005009480 #19	LSM8 (ENSSHBG00005009461) #20	ENSSHBG00005009388	ENSSHBG00005009348	ENSSHBG00005009339	KCND2 (ENSSHBG00005009311) #22	TSPAN12 (ENSSHBG00005009282) #23	ING3 (ENSSHBG00005009270) #24	ENSSHBG00005009264 #25	CPED1 (ENSSHBG00005009250) #25	WNT16 (ENSSHBG00005009190) #26	ENSSHBG00005009160	FAM3C (ENSSHBG00005009145) #27	PTPRZ1 (ENSSHBG00005009048) #28	AASS (ENSSHBG00005008699) #29	FEZF1 (ENSSHBG00005008618) #30	CADPS2 (ENSSHBG00005003467) #31	SLC13A1 (ENSSHBG00005002158) #35	ENSSHBG00005002016	IQUB (ENSSHBG00005001979) #36	ASB15 (ENSSHBG00005001937)
Golden eagle	MODERN SPECIES	21	TFEC (ENSACCG00020013475) #8	ENSACCG00020013448	TES (ENSACCG00020013418) #9	CAV2 (ENSACCG00020013411) #10	CAV1 (ENSACCG00020013402) #11	MET (ENSACCG00020013383) #12	CAPZA2 (ENSACCG00020013367) #13	ST7 (ENSACCG00020013343) #14	WNT2 (ENSACCG00020013296) #16	ENSACCG00020013258 #18	CFTR (ENSACCG00020013240) #17	CTTNBP2 (ENSACCG00020013195) #19	LSM8 (ENSACCG00020013148) #20	ENSACCG00020013129	ENSACCG00020013093	KCND2 (ENSACCG00020013078) #22	TSPAN12 (ENSACCG00020013048) #23	ING3 (ENSACCG00020013015) #24	CPED1 (ENSACCG00020012968) #25	WNT16 (ENSACCG00020012907) #26	FAM3C (ENSACCG00020012884) #27	ENSACCG00020012828	PTPRZ1 (ENSACCG00020012691) #28	AASS (ENSACCG00020012632) #29	FEZF1 (ENSACCG00020012596) #30	CADPS2 (ENSACCG00020012430) #31	ENSACCG00020012332 #35	ENSACCG00020012300	ENSACCG00020012259	IQUB (ENSACCG00020012226) #36	NDUFA5 (ENSACCG00020012194) #37
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.a.b #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.a.a #9	ENSGT00940000155993.a.b #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.a.a #9	ENSGT00940000155993.a.b #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000155480	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993.a.b #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982.sd.a	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000166287	ENSGT00390000014326 #36	ENSGT00390000008099 #37	ENSGT00940000157073	ENSGT00940000156567
Zebra finch	MODERN SPECIES	11	MDFIC (ENSTGUG00000005311) #7	TFEC (ENSTGUG00000025154) #8	TES (ENSTGUG00000005272) #9	CAV2 (ENSTGUG00000028946) #10	CAV1 (ENSTGUG00000021482) #11	MET (ENSTGUG00000005136) #12	CAPZA2 (ENSTGUG00000021964) #13	ST7 (ENSTGUG00000005050) #14	ENSTGUG00000024421	WNT2 (ENSTGUG00000005016) #16	ASZ1 (ENSTGUG00000004962) #18	CFTR (ENSTGUG00000004828) #17	CTTNBP2 (ENSTGUG00000004732) #19	LSM8 (ENSTGUG00000028972) #20	ENSTGUG00000019694	KCND2 (ENSTGUG00000004691) #22	TSPAN12 (ENSTGUG00000004668) #23	ING3 (ENSTGUG00000004655) #24	CPED1 (ENSTGUG00000004646) #25	WNT16 (ENSTGUG00000025350) #26	FAM3C (ENSTGUG00000004613) #27	PTPRZ1 (ENSTGUG00000004543) #28	AASS (ENSTGUG00000004496) #29	FEZF1 (ENSTGUG00000004488) #30	CADPS2 (ENSTGUG00000004403) #31	SLC13A1 (ENSTGUG00000004349) #35	ENSTGUG00000004340	ENSTGUG00000004331 #36	LMOD2 (ENSTGUG00000004327)	WASL (ENSTGUG00000004276)	ENSTGUG00000004273
Common canary	MODERN SPECIES	6	MDFIC (ENSSCAG00000009429) #7	TFEC (ENSSCAG00000009440) #8	TES (ENSSCAG00000009450) #9	CAV2 (ENSSCAG00000009464) #10	CAV1 (ENSSCAG00000009469) #11	MET (ENSSCAG00000009475) #12	CAPZA2 (ENSSCAG00000009492) #13	ST7 (ENSSCAG00000009507) #14	WNT2 (ENSSCAG00000009523) #16	ENSSCAG00000009534 #18	CFTR (ENSSCAG00000009670) #17	CTTNBP2 (ENSSCAG00000010165) #19	LSM8 (ENSSCAG00000000112) #20	ENSSCAG00000000121	ENSSCAG00000000133	KCND2 (ENSSCAG00000000182) #22	TSPAN12 (ENSSCAG00000000213) #23	ING3 (ENSSCAG00000000233) #24	CPED1 (ENSSCAG00000000269) #25	WNT16 (ENSSCAG00000000288) #26	FAM3C (ENSSCAG00000000301) #27	PTPRZ1 (ENSSCAG00000000336) #28	AASS (ENSSCAG00000000401) #29	FEZF1 (ENSSCAG00000000429) #30	CADPS2 (ENSSCAG00000001348) #31	SLC13A1 (ENSSCAG00000003643) #35	ENSSCAG00000003656	IQUB (ENSSCAG00000003666) #36	NDUFA5 (ENSSCAG00000003685) #37	ENSSCAG00000003690	LMOD2 (ENSSCAG00000003712)
Flycatcher	MODERN SPECIES	10	TFEC (ENSFALG00000025375) #8	TES (ENSFALG00000010124) #9	CAV2 (ENSFALG00000027178) #10	CAV1 (ENSFALG00000010117) #11	MET (ENSFALG00000010094) #12	CAPZA2 (ENSFALG00000025088) #13	ST7 (ENSFALG00000010057) #14	WNT2 (ENSFALG00000024891) #16	ASZ1 (ENSFALG00000010054) #18	CFTR (ENSFALG00000010051) #17	CTTNBP2 (ENSFALG00000010036) #19	LSM8 (ENSFALG00000023574) #20	ENSFALG00000025919	ENSFALG00000028483	ENSFALG00000026847	KCND2 (ENSFALG00000010001) #22	TSPAN12 (ENSFALG00000009987) #23	ING3 (ENSFALG00000009971) #24	CPED1 (ENSFALG00000009963) #25	WNT16 (ENSFALG00000025164) #26	FAM3C (ENSFALG00000028842) #27	PTPRZ1 (ENSFALG00000009943) #28	AASS (ENSFALG00000009936) #29	FEZF1 (ENSFALG00000009923) #30	CADPS2 (ENSFALG00000009915) #31	SLC13A1 (ENSFALG00000009911) #35	ENSFALG00000009908	IQUB (ENSFALG00000009903) #36	NDUFA5 (ENSFALG00000009900) #37	ENSFALG00000023113	LMOD2 (ENSFALG00000009898)
Great tit	MODERN SPECIES	10	MDFIC (ENSPMJG00000010365) #7	TFEC (ENSPMJG00000010298) #8	TES (ENSPMJG00000010232) #9	CAV2 (ENSPMJG00000010228) #10	CAV1 (ENSPMJG00000010227) #11	MET (ENSPMJG00000010222) #12	CAPZA2 (ENSPMJG00000010167) #13	ST7 (ENSPMJG00000010160) #14	WNT2 (ENSPMJG00000010142) #16	ASZ1 (ENSPMJG00000010138) #18	CFTR (ENSPMJG00000010133) #17	CTTNBP2 (ENSPMJG00000010132) #19	LSM8 (ENSPMJG00000010122) #20	ENSPMJG00000010120	ENSPMJG00000010089	ENSPMJG00000010076 #22	TSPAN12 (ENSPMJG00000010063) #23	ING3 (ENSPMJG00000010056) #24	CPED1 (ENSPMJG00000010048) #25	WNT16 (ENSPMJG00000010042) #26	FAM3C (ENSPMJG00000010041) #27	PTPRZ1 (ENSPMJG00000010040) #28	AASS (ENSPMJG00000010036) #29	FEZF1 (ENSPMJG00000010035) #30	CADPS2 (ENSPMJG00000010030) #31	SLC13A1 (ENSPMJG00000010001) #35	ENSPMJG00000009956	IQUB (ENSPMJG00000009955) #36	NDUFA5 (ENSPMJG00000009953) #37	ENSPMJG00000009952	LMOD2 (ENSPMJG00000009951)
Anura	ANCESTRAL SPECIES	24	ENSGT00940000158685 #7	ENSGT00940000159404 #8	ENSGT00940000155993 #9	ENSGT00950000183006.A.b #10	ENSGT00950000183006.B.f.b.a #11	ENSGT00940000158022 #12	ENSGT00950000183119.a.e.b #13	ENSGT00390000000873.a.b #14	ENSGT00940000159231 #16	ENSGT00880000138051.a #18	ENSGT00940000158567 #17	ENSGT00940000158293 #19	ENSGT00730000111212 #20	ENSGT00940000163982	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00950000183004.a.b.a.a #27	ENSGT00940000155529.C #28	ENSGT00390000013249 #29	ENSGT00940000159477 #30	ENSGT00590000083094.a.b #31	ENSGT01030000234550.a.a.d.a.a #35	ENSGT00940000158268.a	ENSGT00440000037417.A	ENSGT00950000182976.a.b	ENSGT00940000157402	ENSGT00390000006758.b
Frog	DUPLICATION
Frog	MODERN SPECIES	3	cav2 (ENSXETG00000040190) #10	cav1 (ENSXETG00000011572) #11	met (ENSXETG00000021752) #12	capza2 (ENSXETG00000021760) #13	ENSXETG00000045498	st7 (ENSXETG00000021764) #14	ENSXETG00000035452	wnt2 (ENSXETG00000031217) #16	asz1 (ENSXETG00000021791) #18	cftr (ENSXETG00000021796) #17	cttnbp2 (ENSXETG00000021813) #19	lsm8 (ENSXETG00000021829) #20	ENSXETG00000021831	ENSXETG00000045849	ENSXETG00000047565	kcnd2 (ENSXETG00000033363) #22	tspan12 (ENSXETG00000039927) #23	ing3 (ENSXETG00000022722) #24	germes (ENSXETG00000022726)	cped1 (ENSXETG00000033347) #25	wnt16 (ENSXETG00000022727) #26	fam3c (ENSXETG00000022730) #27	ENSXETG00000045889	ptprz1 (ENSXETG00000022735) #28	aass (ENSXETG00000022747) #29	fezf1 (ENSXETG00000022748) #30	cadps2 (ENSXETG00000022749) #31	slc13a1 (ENSXETG00000022751) #35	atp6ap1.1 (ENSXETG00000038933)	iqub (ENSXETG00000022138) #36	ndufa5 (ENSXETG00000038917) #37
Frog	MODERN SPECIES	8	ENSXETG00000045103	ENSXETG00000042195	syce1 (ENSXETG00000041899)	ENSXETG00000044331	ENSXETG00000043115	sft2d3 (ENSXETG00000045709)	XB5795058 [provisional] (ENSXETG00000036260)	imp4 (ENSXETG00000045525)	arhgef3.1 (ENSXETG00000025462)	ENSXETG00000041659	rhoa.2 (ENSXETG00000009241)	uba1 (ENSXETG00000047879)	CCDC120 (ENSXETG00000043887)	tfe3 (ENSXETG00000047721)	gripap1 (ENSXETG00000048719)	kcnd1 (ENSXETG00000023771) #22	SLC35A2 (ENSXETG00000047186)	plxna3 (ENSXETG00000003370)	fam50a (ENSXETG00000003375)	gdi1 (ENSXETG00000003376)	atp6ap1.2 (ENSXETG00000003377)	tafazzin (ENSXETG00000003378)	slc25a20l (ENSXETG00000049485)	DNASE1L1 (ENSXETG00000048321)	dnase1l1 (ENSXETG00000045715)	rpl10 (ENSXETG00000010878)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000007175	ENSLLEG00000007200	ENSLLEG00000007214	CAV2 (ENSLLEG00000007273) #10	CAV1 (ENSLLEG00000007292) #11	ENSLLEG00000007314	MET (ENSLLEG00000007329) #12	CAPZA2 (ENSLLEG00000007430) #13	ST7 (ENSLLEG00000007521) #14	ASZ1 (ENSLLEG00000008226) #18	CFTR (ENSLLEG00000008811) #17	CTTNBP2 (ENSLLEG00000009120) #19	LSM8 (ENSLLEG00000009457) #20	ENSLLEG00000009520	ENSLLEG00000009794	KCND2 (ENSLLEG00000009861) #22	TSPAN12 (ENSLLEG00000009903) #23	ING3 (ENSLLEG00000010107) #24	CPED1 (ENSLLEG00000010420) #25	ENSLLEG00000010688	WNT16 (ENSLLEG00000010707) #26	FAM3C (ENSLLEG00000010809) #27	PTPRZ1 (ENSLLEG00000010960) #28	AASS (ENSLLEG00000011337) #29	ENSLLEG00000011449	FEZF1 (ENSLLEG00000011472) #30	ENSLLEG00000011550	CADPS2 (ENSLLEG00000011642) #31	ENSLLEG00000013299	ENSLLEG00000013323	SLC13A1 (ENSLLEG00000013350) #35
Leishan spiny toad	MODERN SPECIES	49															ENSLLEG00000017131	ENSLLEG00000017068 #22
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	688																KCND2 (ENSLACG00000015409) #22	ENSLACG00000013287	TSPAN12 (ENSLACG00000012969) #23	ING3 (ENSLACG00000012102) #24	ENSLACG00000011955	ENSLACG00000009239 #25	WNT16 (ENSLACG00000007403) #26	FAM3C (ENSLACG00000006800) #27	ENSLACG00000004449
Coelacanth	MODERN SPECIES	1399																kcnd1 (ENSLACG00000010550) #22	ENSLACG00000009512	WDR45 (ENSLACG00000009130)	ENSLACG00000008809	ENSLACG00000008615	CACNA1F (ENSLACG00000006707)	SYP (ENSLACG00000004259)	PRICKLE3 (ENSLACG00000002314)
Actinopterygii	ANCESTRAL SPECIES	519															ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00390000012715	ENSGT00940000159912	ENSGT00390000004735.C	ENSGT01050000244850.A.a
Neopterygii	ANCESTRAL SPECIES	320													ENSGT00940000164289.a	ENSGT00390000006665.b	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000159912	ENSGT00390000004735.C	ENSGT00390000003282.A	ENSGT00940000165688	ENSGT00940000159633	ENSGT00940000153231.A
Osteoglossocephalai	ANCESTRAL SPECIES	116	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a
Osteoglossiformes	ANCESTRAL SPECIES	147	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000162187	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a
Asian bonytongue	MODERN SPECIES		uxt (ENSSFOG00015002509)	ENSSFOG00015002614	ENSSFOG00015002627	otud5a (ENSSFOG00015030449)	pim2 (ENSSFOG00015002649)	pim2 (ENSSFOG00015002666)	slc35a2 (ENSSFOG00015002690)	bcap31 (ENSSFOG00015002726)	slc6a8 (ENSSFOG00015033035)	slc6a8 (ENSSFOG00015002806)	PNCK (ENSSFOG00015002842)	plxna3 (ENSSFOG00015002896)	ptpn18 (ENSSFOG00015003042)	MON1B (ENSSFOG00015003085)	gripap1 (ENSSFOG00015003095)	kcnd1 (ENSSFOG00015017051) #22	ENSSFOG00015017062	pim1 (ENSSFOG00015017076)	TBC1D22B (ENSSFOG00015017113)	ENSSFOG00015017195	ENSSFOG00015017228	ENSSFOG00015017280	pabpc1l (ENSSFOG00015017304)	ywhaba (ENSSFOG00015017410)	eif2s2 (ENSSFOG00015017437)	chmp4bb (ENSSFOG00015017482)	VAPB (ENSSFOG00015017501)	ENSSFOG00015017564	ENSSFOG00015032545	AURKA (ENSSFOG00015017657)	ENSSFOG00015017669
P. kingsleyae	MODERN SPECIES	225					ENSPKIG00000015557	otud5a (ENSPKIG00000015573)	pim2 (ENSPKIG00000015605)	slc35a2 (ENSPKIG00000015621)	bcap31 (ENSPKIG00000015641)	slc6a8 (ENSPKIG00000015674)	PNCK (ENSPKIG00000015718)	plxna3 (ENSPKIG00000015762)	ptpn18 (ENSPKIG00000015834)	MON1B (ENSPKIG00000015856)	gripap1 (ENSPKIG00000015897)	kcnd1 (ENSPKIG00000015971) #22	ENSPKIG00000015987	ENSPKIG00000016004	ENSPKIG00000016059	ENSPKIG00000016076	nop56 (ENSPKIG00000016095)	pim1 (ENSPKIG00000016119)	TBC1D22B (ENSPKIG00000016166)	ENSPKIG00000016235	prkd4 (ENSPKIG00000016275)	ENSPKIG00000016342	PACS1 (ENSPKIG00000016411)	sf3b2 (ENSPKIG00000016576)	capn1 (ENSPKIG00000016680)	SLC29A2 (ENSPKIG00000016783)
Clupeocephala	ANCESTRAL SPECIES	149	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b	ENSGT00940000155056.b	ENSGT00940000163942.a	ENSGT00940000158374.d	ENSGT00940000166894	ENSGT00390000009278.a	ENSGT00940000154570.a.a	ENSGT00940000159410	ENSGT00940000160362	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472
Otomorpha	ANCESTRAL SPECIES	83	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000161689	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950
Clupeiformes	ANCESTRAL SPECIES	80	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00950000182839.B.a.b
Denticle herring	MODERN SPECIES	1	grm6a (ENSDCDG00000023855)	USP11 (ENSDCDG00000026692)	zgc:86609 (ENSDCDG00000030234)	uxt (ENSDCDG00000030254)	ELK1 (ENSDCDG00000030257)	ENSDCDG00000030264	otud5a (ENSDCDG00000030287)	pim2 (ENSDCDG00000030420)	slc35a2 (ENSDCDG00000030422)	bcap31 (ENSDCDG00000030429)	slc6a8 (ENSDCDG00000030465)	ENSDCDG00000032001	plxna3 (ENSDCDG00000032471)	ptpn18 (ENSDCDG00000033724)	gripap1 (ENSDCDG00000033747)	kcnd1 (ENSDCDG00000033776) #22	ENSDCDG00000033778	ENSDCDG00000033784	pim1 (ENSDCDG00000033790)	TBC1D22B (ENSDCDG00000033801)	ENSDCDG00000033813	ENSDCDG00000033816	MAPK13 (ENSDCDG00000033839)	BRPF3 (ENSDCDG00000034092)	nr1h5 (ENSDCDG00000034128)	slc66a1 (ENSDCDG00000034129)	trim33 (ENSDCDG00000034137)	bcas2 (ENSDCDG00000034162)	DENND2C (ENSDCDG00000034183)	ampd1 (ENSDCDG00000034239)	nras (ENSDCDG00000034521)
Atlantic herring	MODERN SPECIES	20	krt5 (ENSCHAG00000006207)	ENSCHAG00000006678	zgc:171775 (ENSCHAG00000006701)	ENSCHAG00000006888	ENSCHAG00000008802	LHFPL4 (ENSCHAG00000008817)	CPNE9 (ENSCHAG00000008851)	ENSCHAG00000009780	ENSCHAG00000009804	slc6a8 (ENSCHAG00000009838)	ENSCHAG00000010690	plxna3 (ENSCHAG00000010924)	ptpn18 (ENSCHAG00000016444)	ENSCHAG00000016460	gripap1 (ENSCHAG00000016485)	kcnd1 (ENSCHAG00000016901) #22	ENSCHAG00000016925	pim1 (ENSCHAG00000016969)	TBC1D22B (ENSCHAG00000017033)	ENSCHAG00000017578	MAPK13 (ENSCHAG00000017614)	BRPF3 (ENSCHAG00000018370)	nr1h5 (ENSCHAG00000018560)	slc66a1 (ENSCHAG00000018565)	trim33 (ENSCHAG00000018593)	bcas2 (ENSCHAG00000019048)	DENND2C (ENSCHAG00000019082)	ampd1 (ENSCHAG00000019158)	nras (ENSCHAG00000020193)	csde1 (ENSCHAG00000020279)	ENSCHAG00000022130
Otophysi	ANCESTRAL SPECIES	127	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00940000160326.d
Characiphysae	ANCESTRAL SPECIES	41	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000161689	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00940000160326.d
Channel catfish	MODERN SPECIES	24	grm6a (ENSIPUG00000011995)	usp11 (ENSIPUG00000011912)	zgc:86609 (ENSIPUG00000011878)	Uxt (ENSIPUG00000011857)	elk1 (ENSIPUG00000011841)	LRRN1 (ENSIPUG00000011826)	otud5 (ENSIPUG00000011788)	pim2 (ENSIPUG00000011752)	slc35a2 (ENSIPUG00000011733)	bcap31 (ENSIPUG00000011713)	Slc6a8 (ENSIPUG00000011661)	ENSIPUG00000011620	plxna3 (ENSIPUG00000011528)	Ptpn18 (ENSIPUG00000011444)	Gripap1 (ENSIPUG00000011217)	kcnd1 (ENSIPUG00000011155) #22	ENSIPUG00000011105	ENSIPUG00000011089	PIM3 (ENSIPUG00000011062)	tbc1d22b (ENSIPUG00000011021)	ENSIPUG00000011014	ENSIPUG00000010985	BRPF3 (ENSIPUG00000010904)	Nr1h4 (ENSIPUG00000010855)	slc66a1 (ENSIPUG00000010811)	trim33 (ENSIPUG00000010731)	bcas2 (ENSIPUG00000010649)	dennd2c (ENSIPUG00000010599)	ampd1 (ENSIPUG00000010509)	nras (ENSIPUG00000010414)	ASB13 (ENSIPUG00000010393)
Characiphysae_b	ANCESTRAL SPECIES	100												ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00940000160326.d	ENSGT00940000158064
Electric eel	MODERN SPECIES	911													ENSEEEG00000000351	ptpn18 (ENSEEEG00000000380)	gripap1 (ENSEEEG00000000415)	kcnd1 (ENSEEEG00000000431) #22	ENSEEEG00000000461
Characoidei	ANCESTRAL SPECIES	99												ENSGT01050000244850.A.a.o.a.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00940000165059.B.a	ENSGT00940000160326.d
Mexicana tetra	MODERN SPECIES	21	ENSAMXG00000011411	FRMD3 (ENSAMXG00000035309)	gkap1 (ENSAMXG00000011360)	zgc:136564 (ENSAMXG00000011349)	hnrnpk (ENSAMXG00000011326)	rmi1 (ENSAMXG00000037773)	NTRK2 (ENSAMXG00000011319)	agtpbp1 (ENSAMXG00000011291)	naa35 (ENSAMXG00000011259)	sorbs3 (ENSAMXG00000043577)	pdlim2 (ENSAMXG00000032208)	ENSAMXG00000032686	ptpn18 (ENSAMXG00000038427)	MON1B (ENSAMXG00000017621)	gripap1 (ENSAMXG00000017631)	kcnd1 (ENSAMXG00000031121) #22	ENSAMXG00000033942	pim1 (ENSAMXG00000036419)	TBC1D22B (ENSAMXG00000030380)	ENSAMXG00000038067	ENSAMXG00000032708	BRPF3 (ENSAMXG00000012209)	nr1h5 (ENSAMXG00000012228)	slc66a1 (ENSAMXG00000036105)	trim33 (ENSAMXG00000012262)	bcas2 (ENSAMXG00000012276)	DENND2C (ENSAMXG00000012309)	ampd1 (ENSAMXG00000012319)	nras (ENSAMXG00000012327)	ENSAMXG00000038887	plekha2 (ENSAMXG00000012353)
Red-bellied piranha	MODERN SPECIES	1120																kcnd1 (ENSPNAG00000004835) #22
Cyprinoidei	ANCESTRAL SPECIES	32	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00940000175166	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00390000006665.b.h	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00940000157472	ENSGT00940000160682.a	ENSGT00940000159584	ENSGT00940000155056.a	ENSGT00940000166498	ENSGT00390000003344	ENSGT00940000156361.B	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00940000160326.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	134	ENSGT00390000005780.a.b	ENSGT00390000018078.q	ENSGT00940000157571.a.a	ENSGT00940000165528.d	ENSGT00940000158963.b.b.b	ENSGT00940000163427.c.ab.b	ENSGT00940000175166	ENSGT00950000182827.B.c	ENSGT00390000011863.c.o.a	ENSGT00940000155869.c	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.c	ENSGT00940000164289.a.a	ENSGT00390000006665.b.h	ENSGT00720000108868.c	ENSGT00940000155472.a.a.a #22	ENSGT00940000166296.a	ENSGT00940000153394.c.a.b	ENSGT00940000157472.b	ENSGT00940000160682.a.b	ENSGT00940000160682.a.a.a	ENSGT00940000159584.g	ENSGT00940000155056.a.a	ENSGT00940000166498.e	ENSGT00390000003344.a	ENSGT00940000156361.B.b	ENSGT00390000014494.bc	ENSGT00950000182931.B.a.b.c	ENSGT00950000183011.c.a.a.h	ENSGT00940000158947.b	ENSGT00940000160326.d
Cyprininae_a	ANCESTRAL SPECIES	258	ENSGT00390000005780.a.b	ENSGT00390000018078.q	ENSGT00940000157571.a.a	ENSGT00940000165528.d	ENSGT00940000158963.b.b.b	ENSGT00940000163427.c.ab.b	ENSGT00940000175166	ENSGT00950000182827.B.c	ENSGT00390000011863.c.o.a	ENSGT00940000155869.c	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.c	ENSGT00940000164289.a.a	ENSGT00390000006665.b.h	ENSGT00720000108868.c	ENSGT00940000155472.a.a.a #22	ENSGT00940000166296.a	ENSGT00940000153394.c.a.b	ENSGT00940000157472.b	ENSGT00940000160682.a.b	ENSGT00940000160682.a.a.a	ENSGT00940000159584.g	ENSGT00940000155056.a.a	ENSGT00940000166498.e	ENSGT00390000003344.a	ENSGT00940000156361.B.b	ENSGT00390000014494.bc	ENSGT00950000182931.B.a.b.c	ENSGT00950000183011.c.a.a.h	ENSGT00940000158947.b	ENSGT00940000165059.B.a
Common carp reference	MODERN SPECIES	23	uxt (ENSCCRG00000054398)	zgc:86609 (ENSCCRG00000011959)	ENSCCRG00000064227	ENSCCRG00000071159	otud5a (ENSCCRG00000020046)	pim2 (ENSCCRG00000071894)	ENSCCRG00000071095	slc35a2 (ENSCCRG00000035398)	bcap31 (ENSCCRG00000035634)	slc6a8 (ENSCCRG00000035629)	ENSCCRG00000051042	plxna3 (ENSCCRG00000051129)	ptpn18 (ENSCCRG00000059436)	ENSCCRG00000079483	gripap1 (ENSCCRG00000054385)	kcnd1 (ENSCCRG00000082259) #22	ENSCCRG00000077067	pim1 (ENSCCRG00000065822)	ENSCCRG00000061039	ENSCCRG00000014422	ENSCCRG00000033784	ENSCCRG00000033781	ENSCCRG00000080148	nr1h5 (ENSCCRG00000033773)	slc66a1 (ENSCCRG00000039619)	trim33 (ENSCCRG00000039631)	bcas2 (ENSCCRG00000002803)	DENND2C (ENSCCRG00000047745)	ampd1 (ENSCCRG00000047768)	ENSCCRG00000048983	ENSCCRG00000063487
Golden-line barbel	MODERN SPECIES	311	uxt (ENSSGRG00000041488)	ENSSGRG00000041487	ENSSGRG00000041486	otud5a (ENSSGRG00000041484)	pim2 (ENSSGRG00000041480)	ENSSGRG00000041477	ENSSGRG00000041476	slc35a2 (ENSSGRG00000041475)	bcap31 (ENSSGRG00000041454)	slc6a8 (ENSSGRG00000041450)	ENSSGRG00000041426	plxna3 (ENSSGRG00000041403)	ptpn18 (ENSSGRG00000041399)	ENSSGRG00000041385	gripap1 (ENSSGRG00000041381)	kcnd1 (ENSSGRG00000041379) #22	ENSSGRG00000041376
Goldfish	MODERN SPECIES	48	zgc:86609 (ENSCARG00000009187)	uxt (ENSCARG00000009182)	ENSCARG00000009172	ENSCARG00000009168	otud5a (ENSCARG00000009129)	pim2 (ENSCARG00000009106)	ENSCARG00000009101	slc35a2 (ENSCARG00000009092)	bcap31 (ENSCARG00000009086)	slc6a8 (ENSCARG00000007521)	ENSCARG00000007441	plxna3 (ENSCARG00000006861)	ptpn18 (ENSCARG00000006767)	MON1B (ENSCARG00000006753)	gripap1 (ENSCARG00000006684)	kcnd1 (ENSCARG00000006660) #22	ENSCARG00000006650	ENSCARG00000006645	ENSCARG00000006622	pim1 (ENSCARG00000006574)	TBC1D22B (ENSCARG00000006284)	ENSCARG00000006235	MAPK13 (ENSCARG00000006095)	BRPF3 (ENSCARG00000006032)	nr1h5 (ENSCARG00000014410)	slc66a1 (ENSCARG00000014370)	trim33 (ENSCARG00000012635)	bcas2 (ENSCARG00000012570)	DENND2C (ENSCARG00000012559)	ampd1 (ENSCARG00000010146)	nras (ENSCARG00000010067)
Cyprininae	ANCESTRAL SPECIES	111	ENSGT00390000002062.o	ENSGT01030000234648.a.b.a.b.a.a.b	ENSGT00940000160485.v	ENSGT00390000005780.a.a	ENSGT00390000018078.r	ENSGT00940000157571.b	ENSGT00940000165528.c	ENSGT00940000158963.b.b.a	ENSGT00940000163427.c.ab.a	ENSGT00950000182827.B.d	ENSGT00390000011863.c.p	ENSGT00940000155869.d	ENSGT01050000244850.A.a.o.a.d	ENSGT00940000164289.a.b	ENSGT00720000108868.d	ENSGT00940000155472.a.a.b #22	ENSGT00950000183145.A.b.b.b	ENSGT00940000166296.b	ENSGT00940000153394.c.a.a	ENSGT00940000157472.a	ENSGT00940000160682.a.a.b	ENSGT00940000159584.h	ENSGT00940000155056.a.b	ENSGT00940000166498.f	ENSGT00390000003344.b	ENSGT00940000156361.B.a	ENSGT00390000014494.ac	ENSGT00950000182931.B.a.b.d	ENSGT00950000183011.c.a.a.g	ENSGT00940000158947.a	ENSGT00940000158064.i
Cyprininae_a	ANCESTRAL SPECIES	111	ENSGT00940000155317.a.a.i.b	ENSGT00390000002062.p	ENSGT01030000234648.a.b.a.b.a.a.b	ENSGT00940000160485.v	ENSGT00390000005780.a.a	ENSGT00390000018078.r	ENSGT00940000157571.b	ENSGT00940000165528.c	ENSGT00940000158963.b.b.a	ENSGT00950000182827.B.d	ENSGT00390000011863.c.p	ENSGT00940000155869.d	ENSGT01050000244850.A.a.o.a.d	ENSGT00940000164289.a.b	ENSGT00720000108868.d	ENSGT00940000155472.a.a.b #22	ENSGT00950000183145.A.b.b.b	ENSGT00940000166296.b	ENSGT00940000153394.c.a.a	ENSGT00940000157472.a	ENSGT00940000160682.a.a.b	ENSGT00940000159584.h	ENSGT00940000155056.a.b	ENSGT00940000166498.f	ENSGT00940000156361.B.a	ENSGT00390000014494.ac	ENSGT00950000182931.B.a.b.d	ENSGT00950000183011.c.a.a.g	ENSGT00940000158947.a	ENSGT00940000160326.d	ENSGT00940000158064.i
Golden-line barbel	MODERN SPECIES	63	comta (ENSSGRG00000035052)	abt1 (ENSSGRG00000035053)	grm6a (ENSSGRG00000035056)	USP11 (ENSSGRG00000035063)	zgc:86609 (ENSSGRG00000036052)	uxt (ENSSGRG00000036086)	ENSSGRG00000036088	ENSSGRG00000036090	otud5a (ENSSGRG00000036096)	slc35a2 (ENSSGRG00000036136)	bcap31 (ENSSGRG00000036138)	slc6a8 (ENSSGRG00000036141)	plxna3 (ENSSGRG00000036305)	ptpn18 (ENSSGRG00000036417)	gripap1 (ENSSGRG00000036425)	kcnd1 (ENSSGRG00000036535) #22	ENSSGRG00000036537	pim1 (ENSSGRG00000036538)	TBC1D22B (ENSSGRG00000036540)
Common carp reference	MODERN SPECIES	17	abt1 (ENSCCRG00000025767)	grm6a (ENSCCRG00000044676)	ENSCCRG00000042969	zgc:86609 (ENSCCRG00000075696)	uxt (ENSCCRG00000068398)	ENSCCRG00000058800	ENSCCRG00000019150	ENSCCRG00000069233	otud5a (ENSCCRG00000077446)	slc35a2 (ENSCCRG00000081173)	slc6a8 (ENSCCRG00000033069)	ENSCCRG00000033025	plxna3 (ENSCCRG00000066638)	ptpn18 (ENSCCRG00000005561)	gripap1 (ENSCCRG00000005400)	kcnd1 (ENSCCRG00000053667) #22	ENSCCRG00000014243	ENSCCRG00000064380	pim1 (ENSCCRG00000075335)	ENSCCRG00000079299	ENSCCRG00000076474	ENSCCRG00000075014	ENSCCRG00000039605	nr1h5 (ENSCCRG00000039614)	trim33 (ENSCCRG00000029494)	bcas2 (ENSCCRG00000064476)	DENND2C (ENSCCRG00000039666)	ampd1 (ENSCCRG00000039722)	ENSCCRG00000020061	plekha2 (ENSCCRG00000020058)	ENSCCRG00000067607
Goldfish	MODERN SPECIES	1857	grm6a (ENSCARG00000050523)	USP11 (ENSCARG00000049254)	zgc:86609 (ENSCARG00000049008)	uxt (ENSCARG00000048972)	ENSCARG00000048957	ENSCARG00000048949	otud5a (ENSCARG00000047780)	pim2 (ENSCARG00000047698)	slc35a2 (ENSCARG00000047678)	bcap31 (ENSCARG00000047662)	slc6a8 (ENSCARG00000047363)	ENSCARG00000047350	plxna3 (ENSCARG00000046997)	ptpn18 (ENSCARG00000046896)	gripap1 (ENSCARG00000046818)	kcnd1 (ENSCARG00000046801) #22	ENSCARG00000046795	ENSCARG00000046788	pim1 (ENSCARG00000046776)	TBC1D22B (ENSCARG00000044309)	ENSCARG00000044217	ENSCARG00000044137	BRPF3 (ENSCARG00000043076)	nr1h5 (ENSCARG00000042964)	slc66a1 (ENSCARG00000042943)	trim33 (ENSCARG00000040523)	bcas2 (ENSCARG00000040369)	DENND2C (ENSCARG00000040328)
Zebrafish	MODERN SPECIES	23	zgc:86609 (ENSDARG00000029479)	uxt (ENSDARG00000019339)	ELK1 (ENSDARG00000078066)	ENSDARG00000077112	otud5a (ENSDARG00000059006)	pim2 (ENSDARG00000059001)	ENSDARG00000093019	slc35a2 (ENSDARG00000058990)	bcap31 (ENSDARG00000044972)	slc6a8 (ENSDARG00000043646)	ENSDARG00000043648	plxna3 (ENSDARG00000007172)	ptpn18 (ENSDARG00000006308)	MON1B (ENSDARG00000035686)	gripap1 (ENSDARG00000063069)	kcnd1 (ENSDARG00000074746) #22	ENSDARG00000069542	ENSDARG00000058944	pim1 (ENSDARG00000100020)	TBC1D22B (ENSDARG00000026988)	ENSDARG00000068100	ENSDARG00000058470	BRPF3 (ENSDARG00000074238)	nr1h5 (ENSDARG00000031046)	ENSDARG00000117077	slc66a1 (ENSDARG00000043624)	trim33 (ENSDARG00000016181)	bcas2 (ENSDARG00000043631)	DENND2C (ENSDARG00000073738)	ampd1 (ENSDARG00000033832)	nras (ENSDARG00000038225)
Euteleosteomorpha	ANCESTRAL SPECIES	144	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00950000183145.A.b.b	ENSGT00990000204792	ENSGT00940000163299.B.b.b	ENSGT00940000155987.b	ENSGT00940000157963	ENSGT00940000166296	ENSGT00940000153394.c.a
Acanthomorphata	ANCESTRAL SPECIES	177											ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000156477.d.b	ENSGT00950000182872.f.a.a.a.a	ENSGT00550000075050
Euacanthomorphacea	ANCESTRAL SPECIES	61	ENSGT00990000203541.b	ENSGT01030000234637.b.c.g	ENSGT00940000156315.f	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000156477.d.b	ENSGT00950000182872.f.a.a.a.a
Percomorphaceae	ANCESTRAL SPECIES	36	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000166641	ENSGT00940000156477.d.b
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.b.b
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.b.b
Pomacentridae	ANCESTRAL SPECIES	94	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c.m	ENSGT01050000244850.A.a.p	ENSGT00390000011863.c.n	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156963.a.b	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Pomacentridae_A	ANCESTRAL SPECIES	92	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c.m	ENSGT01050000244850.A.a.p	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156963.a.b	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Amphiprion	ANCESTRAL SPECIES	119	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c.m	ENSGT01050000244850.A.a.p	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156963.a.b	ENSGT00390000012692	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000156805	ENSGT00390000002062
Orange clownfish	MODERN SPECIES	22	cdk20 (ENSAPEG00000022552)	uxt (ENSAPEG00000022571)	ENSAPEG00000022596	ENSAPEG00000022700	otud5a (ENSAPEG00000022848)	pim2 (ENSAPEG00000022862)	slc35a2 (ENSAPEG00000022878)	slc6a8 (ENSAPEG00000022897)	bcap31 (ENSAPEG00000022924)	ENSAPEG00000022940	ENSAPEG00000022958	ENSAPEG00000022962	ENSAPEG00000022970	ptpn18 (ENSAPEG00000022989)	gripap1 (ENSAPEG00000023013)	kcnd1 (ENSAPEG00000023041) #22	ENSAPEG00000023050	ENSAPEG00000023142	arl8a (ENSAPEG00000023154)	GPR37L1 (ENSAPEG00000023190)	ENSAPEG00000023201	ENSAPEG00000023263	ENSAPEG00000023270	SULF2 (ENSAPEG00000023292)	mrgbp (ENSAPEG00000023381)	hm13 (ENSAPEG00000023409)	dnase1l1 (ENSAPEG00000023457)	CDK16 (ENSAPEG00000023524)	tsr2 (ENSAPEG00000023549)	GRM6 (ENSAPEG00000023556)	rad51c (ENSAPEG00000023593)
Spiny chromis	MODERN SPECIES	1877																kcnd1 (ENSAPOG00000014950) #22
Bicolor damselfish	MODERN SPECIES	812												bcap31 (ENSSPAG00000017101)	plxna3 (ENSSPAG00000017008)	ptpn18 (ENSSPAG00000016982)	gripap1 (ENSSPAG00000016784)	kcnd1 (ENSSPAG00000016753) #22	st14b (ENSSPAG00000015991)	ENSSPAG00000015899	arl8a (ENSSPAG00000015869)	GPR37L1 (ENSSPAG00000015857)	ENSSPAG00000015834
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000164755.A	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000156473.e	ENSGT00940000159233
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000164755.A	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c.s	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b.a	ENSGT00940000164481.b.b.a.b.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000156473.e
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT00940000164755.A	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.a.a	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c.s	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b.a	ENSGT00940000164481.b.b.a.b.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000156473.e
Haplochromini	ANCESTRAL SPECIES	20	ENSGT01030000234637.b.c.g.e	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c.s	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b.a	ENSGT00940000164481.b.b.a.b.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000154615.i.a.a.d.j	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a.h	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883
Burton s mouthbrooder	MODERN SPECIES	396	cacna1fb (ENSHBUG00000020008)	ENSHBUG00000019603	cdk20 (ENSHBUG00000019590)	uxt (ENSHBUG00000019558)	ENSHBUG00000019545	ENSHBUG00000019517	otud5a (ENSHBUG00000019501)	pim2 (ENSHBUG00000019471)	slc35a2 (ENSHBUG00000019448)	ENSHBUG00000019418	slc6a8 (ENSHBUG00000019411)	bcap31 (ENSHBUG00000019391)	plxna3 (ENSHBUG00000019337)	ENSHBUG00000019204	gripap1 (ENSHBUG00000019186)	kcnd1 (ENSHBUG00000019152) #22	st14b (ENSHBUG00000019118)
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT01030000234637.b.c.g.e	ENSGT00940000159855	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c.s	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b.a	ENSGT00940000164481.b.b.a.b.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000154615.i.a.a.d.j	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a.h	ENSGT00940000180988	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b
P. nyererei	MODERN SPECIES	568	si:ch211-165i18.2 (ENSPNYG00000003385)	ENSPNYG00000003365	ENSPNYG00000003353	cdk20 (ENSPNYG00000003319)	uxt (ENSPNYG00000003294)	ELK1 (ENSPNYG00000003278)	ENSPNYG00000003179	otud5a (ENSPNYG00000003117)	pim2 (ENSPNYG00000003102)	slc35a2 (ENSPNYG00000003069)	slc6a8 (ENSPNYG00000003021)	bcap31 (ENSPNYG00000002984)	plxna3 (ENSPNYG00000002864)	ptpn18 (ENSPNYG00000002789)	gripap1 (ENSPNYG00000002539)	kcnd1 (ENSPNYG00000002461) #22
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT01030000234637.b.c.g.e	ENSGT00940000159855	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c.s	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b.a.b.a	ENSGT00940000164481.b.b.a.b.b	ENSGT00940000164481.b.b.a.a	ENSGT00940000154615.i.a.a.d.j.b.a	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a.h	ENSGT00940000180988	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b
Eastern happy	MODERN SPECIES	12	ENSACLG00000013207	cdk20 (ENSACLG00000013168)	uxt (ENSACLG00000013141)	ENSACLG00000013136	ENSACLG00000013127	ENSACLG00000012995	otud5a (ENSACLG00000012993)	pim2 (ENSACLG00000012986)	slc35a2 (ENSACLG00000012974)	slc6a8 (ENSACLG00000012965)	bcap31 (ENSACLG00000012951)	ENSACLG00000012939	plxna3 (ENSACLG00000012810)	ptpn18 (ENSACLG00000012671)	gripap1 (ENSACLG00000012389)	kcnd1 (ENSACLG00000012341) #22	st14b (ENSACLG00000012206)	ENSACLG00000012163	st14b (ENSACLG00000012144)	ENSACLG00000012089	ENSACLG00000012076	ENSACLG00000012051	ENSACLG00000012010	arl8a (ENSACLG00000011996)	GPR37L1 (ENSACLG00000011978)	ENSACLG00000011962	ENSACLG00000011955	itpr3 (ENSACLG00000011747)	ENSACLG00000011652	ENSACLG00000011636	SULF2 (ENSACLG00000011582)
Zebra mbuna	MODERN SPECIES	1103	ENSMZEG00005026796	lama5 (ENSMZEG00005026795)	adrm1 (ENSMZEG00005026794)	DNAJC5 (ENSMZEG00005026793)	trim101 (ENSMZEG00005026792)	tpd52l2b (ENSMZEG00005026791)	ppdpfb (ENSMZEG00005026790)	ptk6b (ENSMZEG00005026789)	ENSMZEG00005026788	nol4lb (ENSMZEG00005026787)	slc6a8 (ENSMZEG00005026786)	bcap31 (ENSMZEG00005026785)	plxna3 (ENSMZEG00005026783)	ptpn18 (ENSMZEG00005026782)	gripap1 (ENSMZEG00005026781)	kcnd1 (ENSMZEG00005026780) #22	st14b (ENSMZEG00005026779)	ENSMZEG00005026778	ENSMZEG00005026777	ENSMZEG00005026776	ENSMZEG00005026775	ENSMZEG00005026774	ENSMZEG00005026773	ENSMZEG00005026772	cacna1fb (ENSMZEG00005026771)	sypa (ENSMZEG00005026770)	sypa (ENSMZEG00005026769)	ENSMZEG00005026768	HDAC6 (ENSMZEG00005026767)	cxxc1a (ENSMZEG00005026766)	ENSMZEG00005026765 #7
Lyretail cichlid	MODERN SPECIES	397	ENSNBRG00000009856	ENSNBRG00000009878	ENSNBRG00000009922	cdk20 (ENSNBRG00000009932)	ENSNBRG00000009951	ENSNBRG00000009958	ENSNBRG00000009968	otud5a (ENSNBRG00000009988)	pim2 (ENSNBRG00000010000)	slc35a2 (ENSNBRG00000010015)	slc6a8 (ENSNBRG00000010026)	slc6a8 (ENSNBRG00000010042)	bcap31 (ENSNBRG00000010062)	plxna3 (ENSNBRG00000010108)	gripap1 (ENSNBRG00000010193)	kcnd1 (ENSNBRG00000010338) #22	ENSNBRG00000010362	ENSNBRG00000010382	ENSNBRG00000010409	ENSNBRG00000010421	st14b (ENSNBRG00000010439)
Nile tilapia	MODERN SPECIES	12	ENSONIG00000034231	ENSONIG00000030908	ENSONIG00000042149	ENSONIG00000033574	ENSONIG00000039893	ENSONIG00000013605	ENSONIG00000040435	ENSONIG00000037523	ENSONIG00000037535	ENSONIG00000027981	ENSONIG00000038856	ENSONIG00000034665	ENSONIG00000031831	ptpn18 (ENSONIG00000014635)	gripap1 (ENSONIG00000014636)	kcnd1 (ENSONIG00000014643) #22	st14b (ENSONIG00000030483)	st14b (ENSONIG00000014645)	st14b (ENSONIG00000014650)	ENSONIG00000014661	GPR37L1 (ENSONIG00000027203)	arl8a (ENSONIG00000014667)	itpr3 (ENSONIG00000014673)	ENSONIG00000041759	ENSONIG00000014700	SULF2 (ENSONIG00000014704)	mrgbp (ENSONIG00000014710)	hm13 (ENSONIG00000014713)	ENSONIG00000014719	snx21 (ENSONIG00000014724)	ENSONIG00000022678
Midas cichlid	MODERN SPECIES	594											slc6a8 (ENSACIG00000006151)	bcap31 (ENSACIG00000006161)	plxna3 (ENSACIG00000006201)	ptpn18 (ENSACIG00000006295)	gripap1 (ENSACIG00000006325)	kcnd1 (ENSACIG00000006434) #22	ENSACIG00000006459	ENSACIG00000006478	ENSACIG00000006484
Atherinomorphae	ANCESTRAL SPECIES	50								ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000166313.b	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438	ENSGT00390000003348
Oryzias	ANCESTRAL SPECIES	45	ENSGT00950000182945.b.a.a.a.b.b.c.b	ENSGT00390000016016.B	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00390000000020.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00390000013727.c	ENSGT00940000156759.a.a	ENSGT00940000157867.a.b	ENSGT00390000008714.a	ENSGT00940000153541.B	ENSGT00530000065390	ENSGT00940000154513.A	ENSGT00940000153798.A.b.h	ENSGT00390000002421.a	ENSGT00950000183126.a.p.a	ENSGT00950000183126.a.p.b	ENSGT00940000153497.A	ENSGT00610000087015	ENSGT00940000160546
Oryzias_b	ANCESTRAL SPECIES	48	ENSGT00390000009842	ENSGT00950000182945.b.a.a.a.b.b.c.b	ENSGT00390000016016.B	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00390000000020.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00390000013727.c	ENSGT00940000156759.a.a	ENSGT00940000157867.a.b	ENSGT00390000008714.a	ENSGT00940000153541.B	ENSGT00530000065390	ENSGT00940000154513.A	ENSGT00940000153798.A.b.h	ENSGT00390000002421.a	ENSGT00950000183126.a.p.a	ENSGT00950000183126.a.p.b	ENSGT00940000153497.A	ENSGT00610000087015	ENSGT00940000160546
Indian medaka	MODERN SPECIES	532	ENSOMEG00000023017	ENSOMEG00000023031	adrm1 (ENSOMEG00000023045)	ENSOMEG00000023092	MTCH1 (ENSOMEG00000023160)	otud5a (ENSOMEG00000023176)	pim2 (ENSOMEG00000023203)	slc35a2 (ENSOMEG00000023216)	slc6a8 (ENSOMEG00000023246)	bcap31 (ENSOMEG00000000629)	ENSOMEG00000023270	ENSOMEG00000023283	ENSOMEG00000023288	ptpn18 (ENSOMEG00000023301)	gripap1 (ENSOMEG00000023408)	kcnd1 (ENSOMEG00000023437) #22	ENSOMEG00000023443	st14b (ENSOMEG00000023489)	mfn2 (ENSOMEG00000023507)	ENSOMEG00000023520
Javanese ricefish	MODERN SPECIES	21	tpx2 (ENSOJAG00000002327)	ENSOJAG00000002312	tpk2 (ENSOJAG00000002284)	GMEB2 (ENSOJAG00000002234)	pdyn (ENSOJAG00000002219)	stk35 (ENSOJAG00000002214)	MTCH1 (ENSOJAG00000002167)	otud5a (ENSOJAG00000002144)	pim2 (ENSOJAG00000002128)	slc35a2 (ENSOJAG00000002016)	slc6a8 (ENSOJAG00000001431)	bcap31 (ENSOJAG00000001315)	ptpn18 (ENSOJAG00000001129)	gripap1 (ENSOJAG00000001076)	ENSOJAG00000001051	kcnd1 (ENSOJAG00000001037) #22	ENSOJAG00000001016	mfn2 (ENSOJAG00000000960)	PAX7 (ENSOJAG00000000769)	KCNAB2 (ENSOJAG00000000570)	dedd (ENSOJAG00000000541)	tnnc1b (ENSOJAG00000000531)	ENSOJAG00000000525	ENSOJAG00000000516	ARHGEF10L (ENSOJAG00000000455)	igsf21b (ENSOJAG00000000424)	ENSOJAG00000000401	ENSOJAG00000000363	ENSOJAG00000000356	adrm1 (ENSOJAG00000000177)	ENSOJAG00000000161
Oryzias_a	ANCESTRAL SPECIES	54	ENSGT01030000234558.A.a.a.b	ENSGT00390000009842	ENSGT00950000182945.b.a.a.a.b.b.c.b	ENSGT00390000016016.B	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000158963.a	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00390000013727.c	ENSGT00940000156759.a.a	ENSGT00940000157867.a.b	ENSGT00390000008714.a	ENSGT00940000153541.B	ENSGT00530000065390	ENSGT00940000154513.A	ENSGT00940000153798.A.b.h	ENSGT00390000002421.a	ENSGT00950000183126.a.p.a	ENSGT00950000183126.a.p.b	ENSGT00940000153497.A	ENSGT00610000087015	ENSGT00940000160546
Chinese medaka	MODERN SPECIES	533													ENSOSIG00000011191	ptpn18 (ENSOSIG00000011192)	gripap1 (ENSOSIG00000011193)	kcnd1 (ENSOSIG00000011197) #22	st14b (ENSOSIG00000011198)
Japanese Medaka HdrR	MODERN SPECIES	21	pdyn (ENSORLG00000018801)	ENSORLG00000028189	ENSORLG00000022016	stk35 (ENSORLG00000018785)	ENSORLG00000022556	otud5a (ENSORLG00000026537)	pim2 (ENSORLG00000030307)	ENSORLG00000025465	slc35a2 (ENSORLG00000018649)	ENSORLG00000028243	slc6a8 (ENSORLG00000018600)	bcap31 (ENSORLG00000018518)	plxna3 (ENSORLG00000018412)	ptpn18 (ENSORLG00000018365)	gripap1 (ENSORLG00000018356)	kcnd1 (ENSORLG00000018330) #22	ENSORLG00000018299	mfn2 (ENSORLG00000025366)	ENSORLG00000023957	ENSORLG00000026958	dedd (ENSORLG00000024196)	tnnc1b (ENSORLG00000019408)	ENSORLG00000027984	nppal (ENSORLG00000025996)	nppb (ENSORLG00000027335)	ENSORLG00000024366	ENSORLG00000027273	ENSORLG00000009359	igsf21b (ENSORLG00000016826)	ENSORLG00000016829	ENSORLG00000024029
Cyprinodontiformes	ANCESTRAL SPECIES	46								ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000159247.m	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438
Cyprinodontoidei	ANCESTRAL SPECIES	57								ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000159247.m	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j
Poeciliinae	ANCESTRAL SPECIES	45								ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868.g	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000156315.f	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438
Platyfish	MODERN SPECIES						otud5a (ENSXMAG00000013211)	pim2 (ENSXMAG00000013220)	ENSXMAG00000024874	slc35a2 (ENSXMAG00000007115)	slc6a8 (ENSXMAG00000013815)	bcap31 (ENSXMAG00000027837)	ENSXMAG00000024982	ENSXMAG00000022358	ENSXMAG00000018757	ptpn18 (ENSXMAG00000018760)	gripap1 (ENSXMAG00000015220)	kcnd1 (ENSXMAG00000015183) #22	st14b (ENSXMAG00000025664)	ENSXMAG00000024597	ENSXMAG00000001372	cdk20 (ENSXMAG00000001385)	ENSXMAG00000022112	ENSXMAG00000021321	ENSXMAG00000029137	ENSXMAG00000022561	ENSXMAG00000024741	ENSXMAG00000021723	sypa (ENSXMAG00000001545)	ENSXMAG00000006655	ENSXMAG00000013014	cxxc1a (ENSXMAG00000013043)	ENSXMAG00000021186 #7
Poecilia	ANCESTRAL SPECIES	79																ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000156315.f	ENSGT00940000169444	ENSGT00940000164755.A	ENSGT00940000159855	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j	ENSGT00940000159438
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000155472.a.a #22
Amazon molly	MODERN SPECIES	118																kcnd1 (ENSPFOG00000023976) #22
Sailfin molly	MODERN SPECIES	3175																kcnd1 (ENSPLAG00000016559) #22
Guppy	MODERN SPECIES	9																kcnd1 (ENSPREG00000011841) #22	st14b (ENSPREG00000011879)	ENSPREG00000011952	ENSPREG00000011961	uxt (ENSPREG00000011973)	cdk20 (ENSPREG00000012025)	ENSPREG00000012108	ENSPREG00000012119	cacna1fb (ENSPREG00000012143)	ENSPREG00000012233	sypa (ENSPREG00000012259)	ENSPREG00000012354	HDAC6 (ENSPREG00000012414)	cxxc1a (ENSPREG00000012472)	ENSPREG00000012507 #7	ENSPREG00000012514
NAME_4	ANCESTRAL SPECIES	162													ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000159247.m	ENSGT00940000164755.C	ENSGT00940000164755.A	ENSGT00940000164472.a.a.b.b.a.a.a.a	ENSGT00940000159855	ENSGT01030000234637.b.c.g	ENSGT00990000203541.b	ENSGT00940000159563	ENSGT00730000111044	ENSGT00940000157503.j
Mummichog	MODERN SPECIES	785																kcnd1 (ENSFHEG00000012811) #22	st14b (ENSFHEG00000012780)	ENSFHEG00000012760	ELK1 (ENSFHEG00000012750)	uxt (ENSFHEG00000012737)	cdk20 (ENSFHEG00000012599)	ENSFHEG00000012564	ENSFHEG00000012562
Sheepshead minnow	MODERN SPECIES	775											ENSCVAG00000016071	ENSCVAG00000016061	ENSCVAG00000016046	ptpn18 (ENSCVAG00000016024)	gripap1 (ENSCVAG00000015992)	kcnd1 (ENSCVAG00000015849) #22	ENSCVAG00000015833	ENSCVAG00000015814	ENSCVAG00000015706	uxt (ENSCVAG00000015700)
Aplocheiloidei	ANCESTRAL SPECIES	224													ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128	ENSGT00940000159247.m
Mangrove rivulus	MODERN SPECIES	783																kcnd1 (ENSKMAG00000019112) #22
Turquoise killifish	MODERN SPECIES	1624	abcd1 (ENSNFUG00015022296)	SRPK3 (ENSNFUG00015022414)	ENSNFUG00015022422	ENSNFUG00015022436	FGD1 (ENSNFUG00015022464)	ZGC (ENSNFUG00015022843) #7	cxxc1a (ENSNFUG00015022848)	HDAC6 (ENSNFUG00015022882)	ENSNFUG00015023118	sypa (ENSNFUG00015023119)	ENSNFUG00015023120	ENSNFUG00015023199	PLXNA3 (ENSNFUG00015023270)	ENSNFUG00015023511	gripap1 (ENSNFUG00015023514)	kcnd1 (ENSNFUG00015023528) #22	st14b (ENSNFUG00015023531)	Nfu_g_1_015622 (ENSNFUG00015023537)	ENSNFUG00015023545	ENSNFUG00015023547	UXT (ENSNFUG00015023549)	cdk20 (ENSNFUG00015023559)	ENSNFUG00015023566	ENSNFUG00015023569	ENSNFUG00015023574	ENSNFUG00015023578	ENSNFUG00015023582	EDEM2 (ENSNFUG00015023587)	Nfu_g_1_015548 (ENSNFUG00015023602)	SNX21 (ENSNFUG00015023603)	ENSNFUG00015023608
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Ballan wrasse	MODERN SPECIES	1256																kcnd1 (ENSLBEG00000019285) #22
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Eupecaria_C	ANCESTRAL SPECIES	31	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	42	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000163911.a.a.b.a.a.b.a.b
European seabass	MODERN SPECIES	14	ENSDLAG00005031568	ENSDLAG00005028442	ENSDLAG00005023471	ENSDLAG00005032699	ENSDLAG00005017906	otud5a (ENSDLAG00005017971)	ENSDLAG00005031156	pim2 (ENSDLAG00005029998)	slc35a2 (ENSDLAG00005026420)	ENSDLAG00005017434	ENSDLAG00005026839	plxna3 (ENSDLAG00005034439)	ptpn18 (ENSDLAG00005027988)	gripap1 (ENSDLAG00005030091)	ENSDLAG00005029977	kcnd1 (ENSDLAG00005031354) #22	ENSDLAG00005004037	ENSDLAG00005013877	ENSDLAG00005012814	ENSDLAG00005029493	ENSDLAG00005027131	ENSDLAG00005016990	ENSDLAG00005033805	ENSDLAG00005017027	ENSDLAG00005017412	ENSDLAG00005023701	ENSDLAG00005023787	ENSDLAG00005033169	ENSDLAG00005023832	ENSDLAG00005034479	ENSDLAG00005027452
Large yellow croaker	MODERN SPECIES	29	ENSLCRG00005021163	ENSLCRG00005021172	cdk20 (ENSLCRG00005021327)	uxt (ENSLCRG00005021348)	ENSLCRG00005021349	ENSLCRG00005021350	ENSLCRG00005021351	otud5a (ENSLCRG00005021366)	pim2 (ENSLCRG00005021369)	slc35a2 (ENSLCRG00005021388)	slc6a8 (ENSLCRG00005021393)	bcap31 (ENSLCRG00005021414)	plxna3 (ENSLCRG00005002156)	ptpn18 (ENSLCRG00005002490)	gripap1 (ENSLCRG00005002643)	kcnd1 (ENSLCRG00005002725) #22	ENSLCRG00005002745	snx21 (ENSLCRG00005002771)	ENSLCRG00005002801	ENSLCRG00005002832	ENSLCRG00005002917	hm13 (ENSLCRG00005003043)	MRGBP (ENSLCRG00005003315)	SULF2 (ENSLCRG00005003400)	ENSLCRG00005003550	itpr3 (ENSLCRG00005004032)	GPR37L1 (ENSLCRG00005006642)	arl8a (ENSLCRG00005006649)	ENSLCRG00005006663	st14b (ENSLCRG00005006715)	ENSLCRG00005006891
Perciformes	ANCESTRAL SPECIES	37	ENSGT00940000164755.A	ENSGT00940000156315.f	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT01100000264948	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233
Perciformes_a	ANCESTRAL SPECIES	69	ENSGT00940000156315.f	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT01100000264948	ENSGT00720000108868	ENSGT00940000155472.a.a #22
Pike perch	MODERN SPECIES	96	uxt (ENSSLUG00000024941)	ENSSLUG00000024940	ENSSLUG00000024936	ENSSLUG00000024933	ENSSLUG00000024928	otud5a (ENSSLUG00000024925)	pim2 (ENSSLUG00000024904)	slc35a2 (ENSSLUG00000024890)	slc6a8 (ENSSLUG00000024862)	bcap31 (ENSSLUG00000024852)	plxna3 (ENSSLUG00000024742)	ENSSLUG00000024685	ptpn18 (ENSSLUG00000024680)	ENSSLUG00000024677	gripap1 (ENSSLUG00000024347)	kcnd1 (ENSSLUG00000024290) #22	ENSSLUG00000024283	hm13 (ENSSLUG00000024242)	ENSSLUG00000024233	mrgbp (ENSSLUG00000024229)	SULF2 (ENSSLUG00000023968)	ENSSLUG00000023948
Cottioidei	ANCESTRAL SPECIES	47	ENSGT00950000182872.f.a.a.a.a.b	ENSGT00940000156477.d.b	ENSGT00940000166641	ENSGT00940000159233	ENSGT00940000163908	ENSGT00650000094883	ENSGT00530000063759.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078	ENSGT01100000264948	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000164289.a	ENSGT01050000244850.A.a.o.a	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00950000182827.B	ENSGT00940000163427.c	ENSGT00940000158963.a	ENSGT00940000165528	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000159128
Lumpfish	MODERN SPECIES	22	ENSCLMG00005001220	snx21 (ENSCLMG00005001219)	ENSCLMG00005001217	ENSCLMG00005001216	ENSCLMG00005001215	hm13 (ENSCLMG00005000900)	mrgbp (ENSCLMG00005000892)	ENSCLMG00005000891	ENSCLMG00005000889	ENSCLMG00005000678	itpr3 (ENSCLMG00005000658)	ENSCLMG00005000622	ENSCLMG00005000619	gripap1 (ENSCLMG00005000617)	ENSCLMG00005000612	ENSCLMG00005000611 #22	ENSCLMG00005000600	ENSCLMG00005000598	arl8a (ENSCLMG00005000596)	GPR37L1 (ENSCLMG00005000595)	ENSCLMG00005000594	ENSCLMG00005000593	ENSCLMG00005000586	plxna3 (ENSCLMG00005000582)	bcap31 (ENSCLMG00005000579)	slc6a8 (ENSCLMG00005000577)	slc35a2 (ENSCLMG00005000574)	pim2 (ENSCLMG00005000570)	otud5a (ENSCLMG00005000565)	ENSCLMG00005000563	ELK1 (ENSCLMG00005000560)
Tetraodontidae	ANCESTRAL SPECIES	118						ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078
Tetraodon	MODERN SPECIES	26	ATP8B1 (ENSTNIG00000002536)	txnl1 (ENSTNIG00000002537)	ENSTNIG00000002208	naif1 (ENSTNIG00000002538)	TECTA (ENSTNIG00000002539)	ENSTNIG00000002545	SYDE1 (ENSTNIG00000002546)	ENSTNIG00000001261	ENSTNIG00000002555	ENSTNIG00000002556	ENSTNIG00000002557	ENSTNIG00000002558	ENSTNIG00000000008	ENSTNIG00000002559	BCL6B (ENSTNIG00000002560)	kcnd1 (ENSTNIG00000002565) #22	st14b (ENSTNIG00000002566)	plcb3 (ENSTNIG00000002568)	HIPK1 (ENSTNIG00000002579)	ube2j2 (ENSTNIG00000002580)	acap3b (ENSTNIG00000002581)	dkc1 (ENSTNIG00000002582)	cinp (ENSTNIG00000002583)	ENSTNIG00000000293	tecpr2 (ENSTNIG00000002584)	ankrd9 (ENSTNIG00000001047)	rcor1 (ENSTNIG00000002585)	traf3 (ENSTNIG00000002586)	mipol1 (ENSTNIG00000000967)	ENSTNIG00000002587	ENSTNIG00000000952
Fugu	MODERN SPECIES	15	CPA1 (ENSTRUG00000024102)	stk38a (ENSTRUG00000011953)	stk35 (ENSTRUG00000012129)	pdyn (ENSTRUG00000012175)	GMEB2 (ENSTRUG00000021438)	uxt (ENSTRUG00000012271)	ENSTRUG00000024128	ENSTRUG00000012407	otud5a (ENSTRUG00000012556)	slc35a2 (ENSTRUG00000012691)	slc6a8 (ENSTRUG00000012777)	bcap31 (ENSTRUG00000012958)	plxna3 (ENSTRUG00000012993)	ptpn18 (ENSTRUG00000013333)	gripap1 (ENSTRUG00000013365)	kcnd1 (ENSTRUG00000013491) #22	st14b (ENSTRUG00000013632)	arl8a (ENSTRUG00000013912)	GPR37L1 (ENSTRUG00000013954)	ENSTRUG00000025060	ENSTRUG00000024741	krt18a.1 (ENSTRUG00000014220)	krt8 (ENSTRUG00000014422)	ENSTRUG00000014605	LHFPL4 (ENSTRUG00000014837)	CPNE9 (ENSTRUG00000014842)	klf15 (ENSTRUG00000014976)	ENSTRUG00000027335	ENSTRUG00000014991	ENSTRUG00000028729	PLXNA1 (ENSTRUG00000012831)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00940000164755.A	ENSGT00940000169444	ENSGT00940000156315.f	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00550000075050	ENSGT00950000182872.f.a.a.a.a.b	ENSGT00940000156477.d.b	ENSGT00940000166641	ENSGT00940000159233	ENSGT00940000163908	ENSGT00650000094883	ENSGT00530000063759.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078
Zig-zag eel	MODERN SPECIES	21	ENSMAMG00000012168	ENSMAMG00000012218	ENSMAMG00000012180	uxt (ENSMAMG00000012227)	ENSMAMG00000012258	ENSMAMG00000012314	otud5a (ENSMAMG00000012329)	pim2 (ENSMAMG00000012351)	slc35a2 (ENSMAMG00000012367)	ENSMAMG00000012404	ENSMAMG00000012430	plxna3 (ENSMAMG00000012453)	ptpn18 (ENSMAMG00000012569)	gripap1 (ENSMAMG00000012610)	ENSMAMG00000027067	kcnd1 (ENSMAMG00000012654) #22	ENSMAMG00000012689	ENSMAMG00000024968	ENSMAMG00000012851	ENSMAMG00000026963	ENSMAMG00000024520	ENSMAMG00000012831	ENSMAMG00000012892	ENSMAMG00000025522	ENSMAMG00000013002	ENSMAMG00000025766	ENSMAMG00000013051	ENSMAMG00000027935	ENSMAMG00000013072	ENSMAMG00000013094	ENSMAMG00000013152
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000170958	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00550000075050	ENSGT00950000182872.f.a.a.a.a.b	ENSGT00940000156477.d.b	ENSGT00940000166641	ENSGT00940000159233	ENSGT00940000163908	ENSGT00650000094883	ENSGT00530000063759.b	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00940000156478	ENSGT00390000007823	ENSGT00940000159151	ENSGT00940000160318.c.a	ENSGT00940000157078
Climbing perch	MODERN SPECIES	20	ENSATEG00000019809	ENSATEG00000019956	ENSATEG00000020005	ENSATEG00000020059	uxt (ENSATEG00000021229)	ENSATEG00000020141	ENSATEG00000020181	otud5a (ENSATEG00000020211)	pim2 (ENSATEG00000020263)	slc35a2 (ENSATEG00000020284)	ENSATEG00000020314	ENSATEG00000026362	plxna3 (ENSATEG00000020417)	ptpn18 (ENSATEG00000028292)	gripap1 (ENSATEG00000020553)	kcnd1 (ENSATEG00000020662) #22	ENSATEG00000020690	ENSATEG00000020714	ENSATEG00000028896	ENSATEG00000020771	ENSATEG00000020788	ENSATEG00000020831	ENSATEG00000020873	ENSATEG00000020891	ENSATEG00000026675	ENSATEG00000026468	ENSATEG00000028919	ENSATEG00000025613	ENSATEG00000020987	ENSATEG00000021014	ENSATEG00000021066
Siamese fighting fish	MODERN SPECIES	18	cdk20 (ENSBSLG00000016954)	uxt (ENSBSLG00000017147)	ENSBSLG00000017172	ENSBSLG00000017217	otud5a (ENSBSLG00000017266)	pim2 (ENSBSLG00000017383)	ENSBSLG00000017395	slc35a2 (ENSBSLG00000017401)	slc35a2 (ENSBSLG00000017421)	slc6a8 (ENSBSLG00000017595)	bcap31 (ENSBSLG00000019373)	plxna3 (ENSBSLG00000019433)	ENSBSLG00000019635	ENSBSLG00000019642	gripap1 (ENSBSLG00000019653)	kcnd1 (ENSBSLG00000019897) #22	st14b (ENSBSLG00000019944)	ENSBSLG00000020295	ENSBSLG00000020319	ENSBSLG00000020355	ENSBSLG00000020363	ENSBSLG00000020366	edem2 (ENSBSLG00000020379)	ENSBSLG00000020401	ENSBSLG00000020408	snx21 (ENSBSLG00000020411)	dnase1l1 (ENSBSLG00000020413)	hm13 (ENSBSLG00000020426)	mrgbp (ENSBSLG00000020459)	SULF2 (ENSBSLG00000021128)	ENSBSLG00000021377
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	24	ENSGT00940000159855	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00940000163908	ENSGT00940000159233	ENSGT00940000166641	ENSGT00940000156477.d.b
Tongue sole	MODERN SPECIES	1	ENSCSEG00000017474	sypa (ENSCSEG00000017580)	cacna1fb (ENSCSEG00000017631)	ENSCSEG00000017884	ENSCSEG00000017899	cdk20 (ENSCSEG00000017909)	uxt (ENSCSEG00000017921)	ENSCSEG00000017931	ENSCSEG00000017939	slc35a2 (ENSCSEG00000017956)	slc6a8 (ENSCSEG00000017972)	ENSCSEG00000017993	bcap31 (ENSCSEG00000018042)	plxna3 (ENSCSEG00000018064)	gripap1 (ENSCSEG00000018111)	kcnd1 (ENSCSEG00000018138) #22	st14b (ENSCSEG00000018148)	LGR6 (ENSCSEG00000018163)	ENSCSEG00000018186	KCNA10 (ENSCSEG00000018205)	capza1b (ENSCSEG00000018213) #13	cttnbp2nlb (ENSCSEG00000018240)	kcnd3 (ENSCSEG00000018248)	ENSCSEG00000018263	ddx20 (ENSCSEG00000018265)	parapinopsina (ENSCSEG00000018278)	ENSCSEG00000018305	ENSCSEG00000018334	tktb (ENSCSEG00000018345)	arhgef3l (ENSCSEG00000018397)	uba1 (ENSCSEG00000018402)
Turbot	MODERN SPECIES	2	sypa (ENSSMAG00000014062)	ENSSMAG00000014100	ENSSMAG00000035771	ENSSMAG00000014343	uxt (ENSSMAG00000014363)	ENSSMAG00000014381	ENSSMAG00000014411	otud5a (ENSSMAG00000014429)	pim2 (ENSSMAG00000014470)	slc35a2 (ENSSMAG00000014490)	ENSSMAG00000014523	ENSSMAG00000014595	plxna3 (ENSSMAG00000014612)	ptpn18 (ENSSMAG00000014799)	gripap1 (ENSSMAG00000014832)	kcnd1 (ENSSMAG00000015015) #22	ENSSMAG00000015050	ENSSMAG00000015062	ENSSMAG00000015087	ENSSMAG00000030204	ENSSMAG00000015214	ENSSMAG00000015330	ENSSMAG00000015550	ENSSMAG00000015723	ENSSMAG00000015756	ENSSMAG00000015805	ENSSMAG00000015854	ENSSMAG00000015874	ENSSMAG00000015895	ENSSMAG00000015905	ENSSMAG00000032540
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT01030000234637.b.c.g	ENSGT00940000156315.f	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a
Seriola	ANCESTRAL SPECIES	75	ENSGT00940000164755.A	ENSGT00940000166313.b	ENSGT00940000159128	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000156038.a.b.b.i.a.a	ENSGT00940000158963.a	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00940000155869	ENSGT00390000011863.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000164481.b.b	ENSGT00940000157212.A	ENSGT00940000159657.d.h	ENSGT01100000263518.B.b.a.a	ENSGT00940000157078	ENSGT00940000160318.c.a	ENSGT00940000159151	ENSGT00390000007823	ENSGT00940000156478	ENSGT00950000182846.a.a.a.a.a.a	ENSGT00530000063759.b	ENSGT00650000094883	ENSGT00940000163908	ENSGT00940000159233	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.b.b
Yellowtail amberjack	MODERN SPECIES	3205												bcap31 (ENSSLDG00000011822)	plxna3 (ENSSLDG00000011734)	ptpn18 (ENSSLDG00000011668)	gripap1 (ENSSLDG00000011599)	kcnd1 (ENSSLDG00000011558) #22	st14b (ENSSLDG00000011378)	ENSSLDG00000011330	ENSSLDG00000011273	arl8a (ENSSLDG00000011226)	GPR37L1 (ENSSLDG00000011204)	itpr3 (ENSSLDG00000011055)	ENSSLDG00000010917	SULF2 (ENSSLDG00000010832)	mrgbp (ENSSLDG00000010798)	hm13 (ENSSLDG00000010714)	ENSSLDG00000010666	snx21 (ENSSLDG00000010645)	ENSSLDG00000010629	ENSSLDG00000010603	edem2 (ENSSLDG00000010538)
Greater amberjack	MODERN SPECIES	150	ENSSDUG00000020447	ENSSDUG00000020469	cdk20 (ENSSDUG00000020480)	uxt (ENSSDUG00000020504)	ENSSDUG00000020521	ENSSDUG00000020547	ENSSDUG00000020584	otud5a (ENSSDUG00000020736)	pim2 (ENSSDUG00000020782)	slc35a2 (ENSSDUG00000020792)	slc6a8 (ENSSDUG00000020817)	bcap31 (ENSSDUG00000000122)	plxna3 (ENSSDUG00000000178)	ptpn18 (ENSSDUG00000000337)	gripap1 (ENSSDUG00000000417)	kcnd1 (ENSSDUG00000000452) #22	st14b (ENSSDUG00000000492)	ENSSDUG00000000506	ENSSDUG00000000521	ENSSDUG00000000532	ENSSDUG00000000547	ENSSDUG00000000576	arl8a (ENSSDUG00000000578)	GPR37L1 (ENSSDUG00000000589)	itpr3 (ENSSDUG00000000624)
Barramundi perch	MODERN SPECIES	348	cdk20 (ENSLCAG00010026198)	ENSLCAG00010026193	ENSLCAG00010026189	ENSLCAG00010026184	uxt (ENSLCAG00010026178)	ENSLCAG00010026173	ENSLCAG00010026170	otud5a (ENSLCAG00010026168)	pim2 (ENSLCAG00010026164)	slc35a2 (ENSLCAG00010026161)	slc6a8 (ENSLCAG00010026159)	bcap31 (ENSLCAG00010026156)	plxna3 (ENSLCAG00010025735)	ptpn18 (ENSLCAG00010025292)	gripap1 (ENSLCAG00010025269)	kcnd1 (ENSLCAG00010025256) #22	st14b (ENSLCAG00010025248)
Tiger tail seahorse	MODERN SPECIES	514	ENSHCOG00000002871	fbxo3 (ENSHCOG00000002881)	f2 (ENSHCOG00000002889)	ENSHCOG00000002898	tspan7b (ENSHCOG00000002917)	XDH (ENSHCOG00000002935)	dnajc27 (ENSHCOG00000002948)	ENSHCOG00000002955	creg1 (ENSHCOG00000002961)	otud5a (ENSHCOG00000002974)	slc35a2 (ENSHCOG00000002991)	slc6a8 (ENSHCOG00000003009)	bcap31 (ENSHCOG00000003029)	plxna3 (ENSHCOG00000003075)	gripap1 (ENSHCOG00000003180)	kcnd1 (ENSHCOG00000003209) #22	rad51c (ENSHCOG00000003223)	ENSHCOG00000003571	abt1 (ENSHCOG00000003610)	CDK16 (ENSHCOG00000003661)	GRM6 (ENSHCOG00000003691)	AMIGO1 (ENSHCOG00000003703)	ENSHCOG00000003711	sort1b (ENSHCOG00000003722)	ngrn (ENSHCOG00000003730)	nfyal (ENSHCOG00000003767)	ahcyl1 (ENSHCOG00000003816)	pgm2l1 (ENSHCOG00000003850)	ENSHCOG00000003912	ZNF335 (ENSHCOG00000003939)	prok1 (ENSHCOG00000003950)
Pinecone sodierfish	MODERN SPECIES	21	uxt (ENSMMDG00005019554)	ENSMMDG00005019555	ENSMMDG00005019557	otud5a (ENSMMDG00005019560)	pim2 (ENSMMDG00005019562)	slc35a2 (ENSMMDG00005019564)	slc6a8 (ENSMMDG00005019566)	bcap31 (ENSMMDG00005019569)	ENSMMDG00005019572	ENSMMDG00005019573	ENSMMDG00005019574	ENSMMDG00005019576	plxna3 (ENSMMDG00005019591)	ptpn18 (ENSMMDG00005019678)	gripap1 (ENSMMDG00005019692)	kcnd1 (ENSMMDG00005004077) #22	ENSMMDG00005004095	ENSMMDG00005004129	arl8a (ENSMMDG00005004149)	ENSMMDG00005004189	ENSMMDG00005004199	ENSMMDG00005004207	ENSMMDG00005004212	ENSMMDG00005004224	ENSMMDG00005004237	ENSMMDG00005004246	ENSMMDG00005004271	ENSMMDG00005004274	ENSMMDG00005004277	ENSMMDG00005004281	ENSMMDG00005004285
Cod	MODERN SPECIES		cxxc1a (ENSGMOG00000019497)	ENSGMOG00000001806	ENSGMOG00000018842	ENSGMOG00000010054	ENSGMOG00000037160	slc35a2 (ENSGMOG00000006626)	otud5a (ENSGMOG00000027301)	ENSGMOG00000006603	ENSGMOG00000035986	uxt (ENSGMOG00000008520)	ENSGMOG00000008512	ENSGMOG00000017533	ENSGMOG00000010087	plxna3 (ENSGMOG00000010058)	ENSGMOG00000010541	kcnd1 (ENSGMOG00000008556) #22	ENSGMOG00000035391	ENSGMOG00000013477	ENSGMOG00000028595	ENSGMOG00000013500	ENSGMOG00000012713	ENSGMOG00000036388	ENSGMOG00000012704	ENSGMOG00000036185	ENSGMOG00000018119	ENSGMOG00000018105	ENSGMOG00000027574	ENSGMOG00000002893	ENSGMOG00000033380	ENSGMOG00000036450	ENSGMOG00000011920
Protacanthopterygii	ANCESTRAL SPECIES	135	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a	ENSGT00940000164289.a	ENSGT00720000108868	ENSGT00940000155472.a.a #22	ENSGT00940000166296	ENSGT00940000153394.c.a	ENSGT00390000013764.ib
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	213	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485.k	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000013764.hb.b	ENSGT00940000160318.d	ENSGT00390000018330.e.a	ENSGT00940000160331.e.b	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d
Salmoninae_a	ANCESTRAL SPECIES	14	ENSGT00950000183084.b.a.b	ENSGT00510000047914.a.b	ENSGT00870000136521	ENSGT00390000015408	ENSGT00940000164703.b	ENSGT00940000165371.b	ENSGT00940000164786.b	ENSGT00940000155617.A	ENSGT00940000159879	ENSGT00940000154543.c	ENSGT00940000161921.e.b	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT00940000166296	ENSGT00940000153394.c.a.e	ENSGT00390000013764.ib.b	ENSGT00390000013764.hb.a	ENSGT00940000163461.b	ENSGT00390000018330.e.b	ENSGT00940000159233	ENSGT00940000160331.e.a	ENSGT00950000182872.f.a.a.a.a.e.b	ENSGT00940000156477.c	ENSGT00940000164502.a.a.c	ENSGT00940000159151.g.a	ENSGT00390000007823.q	ENSGT00940000161109.m.a	ENSGT00940000156478.g.b
Salmo	ANCESTRAL SPECIES	16	ENSGT00950000183084.b.a.b	ENSGT00510000047914.a.b	ENSGT00870000136521	ENSGT00390000015408	ENSGT00940000164703.b	ENSGT00940000165371.b	ENSGT00940000164786.b	ENSGT00940000155617.A	ENSGT00940000159879	ENSGT00940000154543.c	ENSGT00940000161921.e.b	ENSGT00940000156776.c.e	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT00940000166296	ENSGT00940000153394.c.a.e	ENSGT00390000013764.ib.b	ENSGT00390000013764.hb.a	ENSGT00940000163461.b	ENSGT00390000018330.e.b	ENSGT00940000159233	ENSGT00940000160331.e.a	ENSGT00950000182872.f.a.a.a.a.e.b	ENSGT00940000156477.c	ENSGT00940000164502.a.a.c	ENSGT00940000159151.g.a	ENSGT00390000007823.q	ENSGT00940000161109.m.a	ENSGT00940000156478.g.b
Atlantic salmon	MODERN SPECIES	6	dffa (ENSSSAG00000079451)	masp2 (ENSSSAG00000079450)	srm (ENSSSAG00000079446)	EXOSC10 (ENSSSAG00000079395)	ENSSSAG00000077784	ENSSSAG00000075260	ENSSSAG00000074597	ENSSSAG00000074346	ttll9 (ENSSSAG00000074314)	ENSSSAG00000084220	ppp1r3da (ENSSSAG00000095716)	ENSSSAG00000074295	plxna3 (ENSSSAG00000106353)	ptpn18 (ENSSSAG00000067127)	gripap1 (ENSSSAG00000066506)	kcnd1 (ENSSSAG00000066481) #22	ENSSSAG00000066474	ENSSSAG00000103387	pim1 (ENSSSAG00000066472)	GSS (ENSSSAG00000066455)	GSS (ENSSSAG00000066407)	ENSSSAG00000065536	ENSSSAG00000065339	EDEM2 (ENSSSAG00000065314)	ndrg3b (ENSSSAG00000114495)	phf20b (ENSSSAG00000061290)	ENSSSAG00000061265	sulf2b (ENSSSAG00000058279)	ENSSSAG00000082809	mrgbp (ENSSSAG00000058155)	ID1 (ENSSSAG00000058127)
River trout	MODERN SPECIES	20	masp2 (ENSSTUG00000038808)	sst7 (ENSSTUG00000038815)	srm (ENSSTUG00000038819)	exosc10 (ENSSTUG00000038850)	ENSSTUG00000039009	ENSSTUG00000039122	ENSSTUG00000040661	ENSSTUG00000044670	ttll9 (ENSSTUG00000045136)	ENSSTUG00000045175	ppp1r3da (ENSSTUG00000045182)	ENSSTUG00000045186	plxna3 (ENSSTUG00000045258)	ptpn18 (ENSSTUG00000046782)	gripap1 (ENSSTUG00000046870)	kcnd1 (ENSSTUG00000046954) #22	ENSSTUG00000046961	ENSSTUG00000046971	pim1 (ENSSTUG00000046972)	GSS (ENSSTUG00000046981)	gss (ENSSTUG00000046984)	ENSSTUG00000047037	trpc4apb (ENSSTUG00000047136)	edem2 (ENSSTUG00000047498)	sla2b (ENSSTUG00000047525)	ndrg3b (ENSSTUG00000047557)	phf20b (ENSSTUG00000047775)	ENSSTUG00000047819	sulf2b (ENSSTUG00000047883)	mrgbp (ENSSTUG00000048212)	ID1 (ENSSTUG00000048217)
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00870000136521	ENSGT00390000015408.e	ENSGT00940000164703.b.e.b	ENSGT00390000015408.f	ENSGT00940000164703.b.e.a	ENSGT00940000165371.b	ENSGT00940000164786.b	ENSGT00940000155617.A	ENSGT00940000159879	ENSGT00940000154543.c	ENSGT00940000161921.e.b	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT00940000166296	ENSGT00940000153394.c.a.e	ENSGT00390000013764.ib.b	ENSGT00390000013764.hb.a	ENSGT00940000163461.b	ENSGT00390000018330.e.b	ENSGT00940000159233	ENSGT00940000160331.e.a	ENSGT00950000182872.f.a.a.a.a.e.b	ENSGT00940000156477.c	ENSGT00940000164502.a.a.c	ENSGT00940000159151.g.a	ENSGT00390000007823.q	ENSGT00940000161109.m.a	ENSGT00940000156478.g.b
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000050130	ENSOMYG00000018840	ENSOMYG00000018226	ENSOMYG00000011532	ENSOMYG00000010974	ttll9 (ENSOMYG00000010870)	ENSOMYG00000010820	ppp1r3da (ENSOMYG00000048653)	ENSOMYG00000010790	plxna3 (ENSOMYG00000008717)	ENSOMYG00000063783	ENSOMYG00000058312	ptpn18 (ENSOMYG00000007580)	ENSOMYG00000053150	gripap1 (ENSOMYG00000007517)	kcnd1 (ENSOMYG00000007330) #22	ENSOMYG00000057385	ENSOMYG00000007268	pim1 (ENSOMYG00000007231)	GSS (ENSOMYG00000007183)	GSS (ENSOMYG00000007029)	ENSOMYG00000006293	ENSOMYG00000063373	ENSOMYG00000005373	EDEM2 (ENSOMYG00000005232)	sla2b (ENSOMYG00000005092)	ndrg3b (ENSOMYG00000004500)	phf20b (ENSOMYG00000003800)	ENSOMYG00000052872	ENSOMYG00000003762	ENSOMYG00000075085
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00870000136521	ENSGT00390000015408.e	ENSGT00940000164703.b.e.b	ENSGT00390000015408.f	ENSGT00940000164703.b.e.a	ENSGT00940000165371.b	ENSGT00940000164786.b	ENSGT00940000155617.A	ENSGT00940000159879	ENSGT00940000154543.c	ENSGT00940000161921.e.b	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT00940000166296	ENSGT00940000153394.c.a.e	ENSGT00390000013764.ib.b	ENSGT00390000013764.hb.a	ENSGT00940000163461.b	ENSGT00390000018330.e.b	ENSGT00940000159233	ENSGT00940000160331.e.a	ENSGT00950000182872.f.a.a.a.a.e.b	ENSGT00940000156477.c	ENSGT00940000164502.a.a.c	ENSGT00940000159151.g.a	ENSGT00390000007823.q	ENSGT00940000161109.m.a	ENSGT00940000156478.g.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	37	masp2 (ENSOTSG00005036428)	sst7 (ENSOTSG00005036429)	srm (ENSOTSG00005036431)	exosc10 (ENSOTSG00005036433)	ENSOTSG00005036435	ENSOTSG00005036441	ENSOTSG00005037859	ENSOTSG00005042836	ttll9 (ENSOTSG00005042837)	ENSOTSG00005042838	ppp1r3da (ENSOTSG00005042839)	ENSOTSG00005042840	plxna3 (ENSOTSG00005042879)	ptpn18 (ENSOTSG00005045495)	gripap1 (ENSOTSG00005045505)	kcnd1 (ENSOTSG00005045510) #22	ENSOTSG00005045511	pim1 (ENSOTSG00005045512)	gss (ENSOTSG00005045513)	ENSOTSG00005045579	ENSOTSG00005045582	edem2 (ENSOTSG00005045583)	sla2b (ENSOTSG00005045587)	ndrg3b (ENSOTSG00005045590)	phf20b (ENSOTSG00005045593)	ENSOTSG00005045595	sulf2b (ENSOTSG00005045616)	mrgbp (ENSOTSG00005045797)	ID1 (ENSOTSG00005045798)	ENSOTSG00005045799	hm13 (ENSOTSG00005045803)
Chinook salmon	MODERN SPECIES	7	dffa (ENSOTSG00005031893)	masp2 (ENSOTSG00005031891)	sst7 (ENSOTSG00005031887)	srm (ENSOTSG00005031881)	exosc10 (ENSOTSG00005031866)	ENSOTSG00005031859	ENSOTSG00005031512	ENSOTSG00005022550	ENSOTSG00005022539	ttll9 (ENSOTSG00005022516)	ENSOTSG00005022488	ENSOTSG00005022463	plxna3 (ENSOTSG00005013153)	ptpn18 (ENSOTSG00005013131)	gripap1 (ENSOTSG00005013129)	kcnd1 (ENSOTSG00005013125) #22	ENSOTSG00005013124	pim1 (ENSOTSG00005013122)	gss (ENSOTSG00005013121)	gss (ENSOTSG00005012922)	ENSOTSG00005012917	ENSOTSG00005012915	edem2 (ENSOTSG00005012913)	sla2b (ENSOTSG00005012912)	ndrg3b (ENSOTSG00005012869)	phf20b (ENSOTSG00005012865)	ENSOTSG00005012860	sulf2b (ENSOTSG00005011682)	mrgbp (ENSOTSG00005011669)	ID1 (ENSOTSG00005011667)	ENSOTSG00005011604
Coho salmon	MODERN SPECIES	8	srm (ENSOKIG00005012378)	exosc10 (ENSOKIG00005012166)	ENSOKIG00005012033	ENSOKIG00005012014	ENSOKIG00005010918	ENSOKIG00005010822	ENSOKIG00005010564	ENSOKIG00005010519	ENSOKIG00005010442	ttll9 (ENSOKIG00005010410)	ENSOKIG00005010391	ENSOKIG00005010378	plxna3 (ENSOKIG00005006429)	ptpn18 (ENSOKIG00005006088)	gripap1 (ENSOKIG00005005844)	kcnd1 (ENSOKIG00005005800) #22	ENSOKIG00005005785	ENSOKIG00005005765	pim1 (ENSOKIG00005005744)	ENSOKIG00005005733	gss (ENSOKIG00005005675)	ENSOKIG00005005636	ENSOKIG00005005615	edem2 (ENSOKIG00005005537)	ndrg3b (ENSOKIG00005005393)	phf20b (ENSOKIG00005005346)	ENSOKIG00005005334	sulf2b (ENSOKIG00005005167)	mrgbp (ENSOKIG00005005094)	ID1 (ENSOKIG00005005077)	hm13 (ENSOKIG00005004871)
Huchen	MODERN SPECIES	810														ENSHHUG00000047790	ENSHHUG00000047795	kcnd1 (ENSHHUG00000047798) #22	ENSHHUG00000047808	pim1 (ENSHHUG00000047814)	ENSHHUG00000047823	ENSHHUG00000047827	gss (ENSHHUG00000047839)	ENSHHUG00000047862	trpc4apb (ENSHHUG00000047872)	edem2 (ENSHHUG00000047888)	sla2b (ENSHHUG00000047901)	ndrg3b (ENSHHUG00000047918)	phf20b (ENSHHUG00000048675)	ENSHHUG00000048689
Salmoninae	ANCESTRAL SPECIES	213	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c	ENSGT01050000244850.A.a.o.a.e	ENSGT00940000164289.a.d	ENSGT00720000108868.e	ENSGT00940000155472.a.a.c #22	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000013764.hb.b	ENSGT00940000160318.d	ENSGT00390000018330.e.a	ENSGT00940000160331.e.b	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485.k	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000013764.hb.b	ENSGT00390000018330.e.a	ENSGT00940000160331.e.b	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d	ENSGT00940000159151.g.b	ENSGT00390000007823.r	ENSGT00940000161109.m.b	ENSGT00940000156478.g.a	ENSGT00950000182846.a.a.a.a.a.a.b	ENSGT00530000063759.b.a	ENSGT00940000157078.i.a.a.b	ENSGT01100000263518.B.b.a.a.b
Salmo	ANCESTRAL SPECIES	4	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485.k	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT00940000156776.c.f	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000013764.ib.a	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d	ENSGT00940000159151.g.b	ENSGT00390000007823.r	ENSGT00940000161109.m.b	ENSGT00940000156478.g.a	ENSGT00530000063759.b.a	ENSGT00940000157078.i.a.a.b	ENSGT01100000263518.B.b.a.a.b	ENSGT00940000159657.d.g.a.b	ENSGT00940000157212.A.b	ENSGT00940000163908
River trout	MODERN SPECIES	23	zgc:86609 (ENSSTUG00000049556)	uxt (ENSSTUG00000049561)	ENSSTUG00000049564	ENSSTUG00000049565	otud5a (ENSSTUG00000049567)	pim2 (ENSSTUG00000049580)	slc35a2 (ENSSTUG00000049583)	bcap31 (ENSSTUG00000049584)	slc6a8 (ENSSTUG00000049592)	ENSSTUG00000049669	plxna3 (ENSSTUG00000049704)	ENSSTUG00000050050	ENSSTUG00000050053	ptpn18 (ENSSTUG00000050057)	gripap1 (ENSSTUG00000050061)	kcnd1 (ENSSTUG00000050121) #22	ENSSTUG00000050123	pim1 (ENSSTUG00000050128)	gss (ENSSTUG00000050151)	TRPC4AP (ENSSTUG00000050156)	sla2b (ENSSTUG00000050180)	ENSSTUG00000050186	ndrg3b (ENSSTUG00000026829)	ENSSTUG00000026920	ENSSTUG00000026927	sulf2b (ENSSTUG00000026948)	ENSSTUG00000027105	mrgbp (ENSSTUG00000027106)	ID1 (ENSSTUG00000027120)	hm13 (ENSSTUG00000027185)	snx21 (ENSSTUG00000028271)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000074048	POB (ENSSSAG00000074008)	uxt (ENSSSAG00000073999)	ENSSSAG00000073997	ENSSSAG00000073995	otud5a (ENSSSAG00000073981)	pim2 (ENSSSAG00000090531)	slc35a2 (ENSSSAG00000073975)	bcap31 (ENSSSAG00000073971)	slc6a8 (ENSSSAG00000073066)	ENSSSAG00000099811	plxna3 (ENSSSAG00000117654)	ptpn18 (ENSSSAG00000072816)	ENSSSAG00000089679	gripap1 (ENSSSAG00000072624)	kcnd1 (ENSSSAG00000072605) #22	ENSSSAG00000072601	pim1 (ENSSSAG00000072583)	ENSSSAG00000072575	ENSSSAG00000072569	ENSSSAG00000072499	ndrg3b (ENSSSAG00000072473)	ENSSSAG00000072462	ENSSSAG00000072459	sulf2b (ENSSSAG00000070048)	ENSSSAG00000083292	ENSSSAG00000084355	mrgbp (ENSSSAG00000120238)	ENSSSAG00000069972	ENSSSAG00000120279	ENSSSAG00000069900
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485.k	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00940000163427.c	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000018330.e.a	ENSGT00940000160331.e.b	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d	ENSGT00940000159151.g.b	ENSGT00390000007823.r	ENSGT00940000161109.m.b	ENSGT00940000156478.g.a	ENSGT00950000182846.a.a.a.a.a.a.b	ENSGT00530000063759.b.a	ENSGT00940000157078.i.a.a.b	ENSGT01100000263518.B.b.a.a.b	ENSGT00940000159657.d.g.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00990000211545.I	ENSGT00390000002062	ENSGT01030000234648.a.b.a.b.a.a	ENSGT00940000160485.k	ENSGT00390000005780.a	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000165528	ENSGT00940000158963.b.b.d	ENSGT00950000182827.B	ENSGT00390000011863.c	ENSGT00940000155869	ENSGT01050000244850.A.a.o.a.f	ENSGT00940000164289.a.c	ENSGT00720000108868.f	ENSGT00940000155472.a.a.d #22	ENSGT00950000183145.A.b.b	ENSGT00940000153394.c.a.f	ENSGT00390000018330.e.a	ENSGT00940000160331.e.b	ENSGT00950000182872.f.a.a.a.a.f	ENSGT00940000164502.a.a.d	ENSGT00940000159151.g.b	ENSGT00390000007823.r	ENSGT00940000161109.m.b	ENSGT00940000156478.g.a	ENSGT00940000156478.h	ENSGT00950000182846.a.a.a.a.a.a.b	ENSGT00530000063759.b.a	ENSGT00940000157078.i.a.a.b	ENSGT01100000263518.B.b.a.a.b
Chinook salmon	MODERN SPECIES	14	ENSOTSG00005007912	abt1 (ENSOTSG00005007913)	grm6a (ENSOTSG00005007914)	USP11 (ENSOTSG00005007925)	zgc:86609 (ENSOTSG00005011090)	uxt (ENSOTSG00005011091)	ENSOTSG00005011092	ENSOTSG00005011094	otud5a (ENSOTSG00005011095)	slc35a2 (ENSOTSG00005011435)	bcap31 (ENSOTSG00005011436)	slc6a8 (ENSOTSG00005011442)	plxna3 (ENSOTSG00005012512)	ptpn18 (ENSOTSG00005012519)	gripap1 (ENSOTSG00005012537)	kcnd1 (ENSOTSG00005013857) #22	ENSOTSG00005013859	prpf6 (ENSOTSG00005013868)	EMILIN3 (ENSOTSG00005014108)	b4galt5 (ENSOTSG00005014110)	slc9a8 (ENSOTSG00005014181)	ENSOTSG00005016151	tlr9 (ENSOTSG00005016152)	ENSOTSG00005016155	ENSOTSG00005016859	capza1b (ENSOTSG00005016860) #13	cttnbp2nlb (ENSOTSG00005016861)	ENSOTSG00005016862	ENSOTSG00005016864	mrgbp (ENSOTSG00005016867)	ENSOTSG00005016870
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000038424	ENSOMYG00000038448	otud5a (ENSOMYG00000038621)	pim2 (ENSOMYG00000070574)	slc35a2 (ENSOMYG00000039080)	bcap31 (ENSOMYG00000039088)	ENSOMYG00000054617	ENSOMYG00000049752	ENSOMYG00000072926	slc6a8 (ENSOMYG00000039300)	ENSOMYG00000069042	ENSOMYG00000065897	plxna3 (ENSOMYG00000040043)	ptpn18 (ENSOMYG00000040450)	gripap1 (ENSOMYG00000040496)	kcnd1 (ENSOMYG00000040558) #22	ENSOMYG00000040568	ENSOMYG00000040580	pim1 (ENSOMYG00000040587)	ENSOMYG00000040626	ndrg3b (ENSOMYG00000040817)	ENSOMYG00000074130	ENSOMYG00000040882	sulf2b (ENSOMYG00000040949)	mrgbp (ENSOMYG00000041780)	id1 (ENSOMYG00000041786)	ENSOMYG00000059041	ENSOMYG00000041818	ENSOMYG00000041850	ENSOMYG00000041859	ENSOMYG00000069629
Huchen	MODERN SPECIES	2734														ENSHHUG00000052011	ENSHHUG00000052012	kcnd1 (ENSHHUG00000052013) #22
Northern pike	MODERN SPECIES	11	CASZ1 (ENSELUG00000013161)	PEX14 (ENSELUG00000012976)	dffa (ENSELUG00000012940)	masp2 (ENSELUG00000012923)	sst7 (ENSELUG00000012908)	srm (ENSELUG00000012901)	exosc10 (ENSELUG00000012870)	ENSELUG00000012757	ENSELUG00000012625	ttll9 (ENSELUG00000012461)	ENSELUG00000025214	ppp1r3da (ENSELUG00000012399)	plxna3 (ENSELUG00000000458)	ptpn18 (ENSELUG00000012253)	gripap1 (ENSELUG00000012159)	kcnd1 (ENSELUG00000012005) #22	ENSELUG00000011978	ENSELUG00000011953	pim1 (ENSELUG00000011885)	gss (ENSELUG00000011816)	ENSELUG00000011755	trpc4apb (ENSELUG00000011638)	edem2 (ENSELUG00000011569)	sla2b (ENSELUG00000011530)	ndrg3b (ENSELUG00000001260)	ENSELUG00000033112	ENSELUG00000011275	sulf2b (ENSELUG00000011218)	mrgbp (ENSELUG00000011074)	ID1 (ENSELUG00000011039)	hm13 (ENSELUG00000011006)
Spotted gar	MODERN SPECIES	647	ENSLOCG00000014427	sema3ga (ENSLOCG00000014436)	tspy (ENSLOCG00000014443)	wasb (ENSLOCG00000014446)	SLC38A5 (ENSLOCG00000014448)	ccdc22 (ENSLOCG00000014464)	apex2 (ENSLOCG00000014467)	zgc:162200 (ENSLOCG00000014473)	nt5dc2 (ENSLOCG00000014477)	FAM107A (ENSLOCG00000014487)	renbp (ENSLOCG00000014488)	ENSLOCG00000014494	ptpn18 (ENSLOCG00000014499)	MON1B (ENSLOCG00000014503)	gripap1 (ENSLOCG00000014510)	kcnd1 (ENSLOCG00000014523) #22	ENSLOCG00000014533	ENSLOCG00000014538	alas2 (ENSLOCG00000014541)	fam50a (ENSLOCG00000014548)	ENSLOCG00000014554	ENSLOCG00000014555	comtb (ENSLOCG00000014559)	abt1 (ENSLOCG00000014561)	grm6a (ENSLOCG00000014563)	ENSLOCG00000014568	zgc:86609 (ENSLOCG00000014569)	uxt (ENSLOCG00000014570)	ELK1 (ENSLOCG00000014572)	ENSLOCG00000017978	otud5a (ENSLOCG00000014573)
Reedfish	MODERN SPECIES	648																kcnd1 (ENSECRG00000018209) #22	ENSECRG00000018261
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1618													ENSCMIG00000011393	BCL2L13 (ENSCMIG00000011389)	atp6v1e1 (ENSCMIG00000011382)	KCND2 (ENSCMIG00000011371) #22	tspan12 (ENSCMIG00000011355) #23	ing3 (ENSCMIG00000011327) #24	ENSCMIG00000011318 #25	wnt16 (ENSCMIG00000011283) #26	IRAK4 (ENSCMIG00000011257)	twf1b (ENSCMIG00000011251)	slc35e3 (ENSCMIG00000011244)	nup107 (ENSCMIG00000010952)	rap1aa (ENSCMIG00000010855)	MDM1 (ENSCMIG00000010824)	ENSCMIG00000010811	dyrk2 (ENSCMIG00000010808)	cand1 (ENSCMIG00000010792)	grip1 (ENSCMIG00000010749)	HELB (ENSCMIG00000010734)
Elephant shark	MODERN SPECIES	1315																kcnd1 (ENSCMIG00000001933) #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Hagfish	MODERN SPECIES	507									ENSEBUG00000000991	ENSEBUG00000008159	gnmt (ENSEBUG00000011858)	FKBP3 (ENSEBUG00000016256)	ENSEBUG00000014358	ing3 (ENSEBUG00000012860) #24	ENSEBUG00000003640	kcnd2 (ENSEBUG00000007503) ##22	ENSEBUG00000007575	CPLANE2 (ENSEBUG00000001986)	FBXO42 (ENSEBUG00000004133)	ENSEBUG00000006354	ENSEBUG00000010648	adhfe1 (ENSEBUG00000001126)	ENSEBUG00000008521	ENSEBUG00000010776
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b ##22
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	43	ENSGT00940000153655.B	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26
Osteoglossiformes	ANCESTRAL SPECIES	42	ENSGT00940000155016	ENSGT00940000153655.B	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000004323.a	ENSGT00940000159122	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987.n	ENSGT00390000000987.m.a	ENSGT00940000158078	ENSGT00940000164702.a	ENSGT00940000154917.hb.a	ENSGT00940000160180	ENSGT00940000159167
P. kingsleyae	MODERN SPECIES	133	fgd6 (ENSPKIG00000015199)	nr2c1 (ENSPKIG00000015286)	ndufa12 (ENSPKIG00000015374)	TMCC3 (ENSPKIG00000015465)	ENSPKIG00000015518	CEP83 (ENSPKIG00000015577)	ENSPKIG00000015633	ENSPKIG00000015666	ENSPKIG00000015698	cradd (ENSPKIG00000015725)	socs2 (ENSPKIG00000015735)	sco2 (ENSPKIG00000015760)	ENSPKIG00000015779	FLNC (ENSPKIG00000015819)	ENSPKIG00000015884	kcnd2 (ENSPKIG00000015914) ##22	tspan12 (ENSPKIG00000015944) #23	ing3 (ENSPKIG00000015991) #24	CPED1 (ENSPKIG00000016047) #25	wnt16 (ENSPKIG00000016084) #26	stab2 (ENSPKIG00000016129)	NT5DC3 (ENSPKIG00000016250)	hsp90b1 (ENSPKIG00000016326)	uqcc6 (ENSPKIG00000016405)	TDG (ENSPKIG00000016422)	tdg.1 (ENSPKIG00000016444)	glt8d2 (ENSPKIG00000016471)	hcfc2 (ENSPKIG00000016523)	nfyba (ENSPKIG00000016560)	ENSPKIG00000016584	chst11 (ENSPKIG00000016614)
Asian bonytongue	MODERN SPECIES	13	metap2b (ENSSFOG00015021604)	ENSSFOG00015031614	vezt (ENSSFOG00015021632)	fgd6 (ENSSFOG00015021648)	nr2c1 (ENSSFOG00015021667)	ndufa12 (ENSSFOG00015021694)	TMCC3 (ENSSFOG00015026776)	CEP83 (ENSSFOG00015021717)	ENSSFOG00015027546	ENSSFOG00015025797	cradd (ENSSFOG00015032020)	socs2 (ENSSFOG00015021760)	sco2 (ENSSFOG00015030962)	ENSSFOG00015021785	FLNC (ENSSFOG00015021834)	kcnd2 (ENSSFOG00015021886) ##22	tspan12 (ENSSFOG00015021890) #23	ing3 (ENSSFOG00015021903) #24	CPED1 (ENSSFOG00015021926) #25	wnt16 (ENSSFOG00015032697) #26	stab2 (ENSSFOG00015021997)	hspe1 (ENSSFOG00015031351)	NT5DC3 (ENSSFOG00015022121)	hsp90b1 (ENSSFOG00015022148)	uqcc6 (ENSSFOG00015028469)	TDG (ENSSFOG00015022186)	tdg.1 (ENSSFOG00015022194)	glt8d2 (ENSSFOG00015022220)	hcfc2 (ENSSFOG00015022249)	nfyba (ENSSFOG00015022265)	TXNRD1 (ENSSFOG00015024693)
Clupeocephala	ANCESTRAL SPECIES	294			ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566
Euteleosteomorpha	ANCESTRAL SPECIES	30	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566
Acanthomorphata	ANCESTRAL SPECIES	76	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566
Cod	MODERN SPECIES	17	ENSGMOG00000003433	GYS2 (ENSGMOG00000003448)	spx (ENSGMOG00000024578)	golt1ba (ENSGMOG00000003486)	RECQL (ENSGMOG00000010504)	ENSGMOG00000030658	ENSGMOG00000031287	ENSGMOG00000006088 #37	ENSGMOG00000006054	ENSGMOG00000006076	TMTC1 (ENSGMOG00000008576)	ENSGMOG00000008722	caprin2 (ENSGMOG00000023874)	ENSGMOG00000029732	dennd5b (ENSGMOG00000018233)	kcnd2 (ENSGMOG00000035032) ##22	tspan12 (ENSGMOG00000013692) #23	ing3 (ENSGMOG00000017030) #24	wnt16 (ENSGMOG00000017077) #26	stab2 (ENSGMOG00000033505)	ENSGMOG00000001863	ENSGMOG00000001875	ENSGMOG00000030340	ENSGMOG00000007945	ENSGMOG00000024794	apex1 (ENSGMOG00000007943)	ENSGMOG00000007933	si:ch211-214j24.10 (ENSGMOG00000032825)	ENSGMOG00000002402	ENSGMOG00000010129	ENSGMOG00000030510
Euacanthomorphacea	ANCESTRAL SPECIES	45	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT00940000163017
Pinecone sodierfish	MODERN SPECIES	15	pthlha (ENSMMDG00005013481)	C11orf98 (ENSMMDG00005013483)	ENSMMDG00005013484	lrp6 (ENSMMDG00005013515)	tbk1 (ENSMMDG00005014700)	gpr19 (ENSMMDG00005014825)	crebl2 (ENSMMDG00005014829)	dusp16 (ENSMMDG00005014835)	eps8a (ENSMMDG00005014850)	PTPRO (ENSMMDG00005014901)	cradd (ENSMMDG00005015092)	socs2 (ENSMMDG00005015094)	ncaph2 (ENSMMDG00005015098)	sco2 (ENSMMDG00005015102)	FLNC (ENSMMDG00005015121)	kcnd2 (ENSMMDG00005015324) ##22	tspan12 (ENSMMDG00005015326) #23	ing3 (ENSMMDG00005015329) #24	wnt16 (ENSMMDG00005015331) #26	ENSMMDG00005015334	stab2 (ENSMMDG00005015349)	ENSMMDG00005015593	ovch1 (ENSMMDG00005015598)	ENSMMDG00005015601	kcnj8 (ENSMMDG00005015602)	abcc9 (ENSMMDG00005015623)	plxnb2a.1 (ENSMMDG00005016350)	dclre1c (ENSMMDG00005016641)	meig1 (ENSMMDG00005016642)	tmem243b (ENSMMDG00005016646)	dmtf1 (ENSMMDG00005016652)
Percomorphaceae	ANCESTRAL SPECIES	35	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000159401.c	ENSGT00940000158780.e	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000005529.b
Percomorphaceae_B	ANCESTRAL SPECIES	27	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a
Ovalentaria	ANCESTRAL SPECIES	24	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT01020000230616	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000163529	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A
Atherinomorphae	ANCESTRAL SPECIES	37	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT01020000230616	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365
Cyprinodontiformes	ANCESTRAL SPECIES	19							ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT01020000230616	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b
Cyprinodontoidei	ANCESTRAL SPECIES	74				ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000159122.h	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT01020000230616	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448
Poeciliinae	ANCESTRAL SPECIES	57					ENSGT00940000158632	ENSGT00530000063472.a.e	ENSGT00940000159122.h	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448
Poecilia	ANCESTRAL SPECIES	95					ENSGT00940000158632	ENSGT00530000063472.a.e	ENSGT00940000159122.h	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448
NAME_6	ANCESTRAL SPECIES	447															ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26
Amazon molly	MODERN SPECIES	1069													eps8a (ENSPFOG00000000503)	eps8a (ENSPFOG00000000473)	ENSPFOG00000000385	kcnd2 (ENSPFOG00000000361) ##22	tspan12 (ENSPFOG00000000326) #23	ing3 (ENSPFOG00000022186) #24	CPED1 (ENSPFOG00000000280) #25	wnt16 (ENSPFOG00000000258) #26
Guppy	MODERN SPECIES		ENSPREG00000018451	rtcb (ENSPREG00000018467)	xpot (ENSPREG00000018505)	rpl18a (ENSPREG00000018550)	ENSPREG00000018581	pthlha (ENSPREG00000018590)	C11orf98 (ENSPREG00000018598)	ENSPREG00000018618	LRP6 (ENSPREG00000018627)	lrp6 (ENSPREG00000018643)	tbk1 (ENSPREG00000018704)	gpr19 (ENSPREG00000018866)	crebl2 (ENSPREG00000018876)	dusp16 (ENSPREG00000018898)	eps8a (ENSPREG00000018918)	kcnd2 (ENSPREG00000018943) ##22	tspan12 (ENSPREG00000018966) #23	ing3 (ENSPREG00000018984) #24	wnt16 (ENSPREG00000019014) #26	ENSPREG00000019022	ENSPREG00000019047	parp12b (ENSPREG00000019105)	FLNC (ENSPREG00000019162)	socs2 (ENSPREG00000019251)	cradd (ENSPREG00000019284)	PTPRO (ENSPREG00000019338)	ncaph2 (ENSPREG00000019464)	sco2 (ENSPREG00000019483)	calua (ENSPREG00000019522)	opn1sw (ENSPREG00000019709)	tnpo3 (ENSPREG00000019847)
Platyfish	MODERN SPECIES	8				svopl (ENSXMAG00000013022)	ENSXMAG00000013039	ENSXMAG00000013040	ENSXMAG00000013045	ENSXMAG00000013048	ENSXMAG00000013054	irf5 (ENSXMAG00000013056)	tnpo3 (ENSXMAG00000013062)	calua (ENSXMAG00000013096)	opn1sw1 (ENSXMAG00000013088)	sco2 (ENSXMAG00000019502)	ENSXMAG00000024480	kcnd2 (ENSXMAG00000019504) ##22	tspan12 (ENSXMAG00000000236) #23	ing3 (ENSXMAG00000009535) #24	wnt16 (ENSXMAG00000009523) #26	stab2 (ENSXMAG00000009421)	parp12b (ENSXMAG00000009417)	ENSXMAG00000028847	ENSXMAG00000028977	ENSXMAG00000022597	ENSXMAG00000022945	socs2 (ENSXMAG00000028306)	cradd (ENSXMAG00000009329)	PTPRO (ENSXMAG00000009306)	dclre1c (ENSXMAG00000021657)	tmem243b (ENSXMAG00000024873)	dmtf1 (ENSXMAG00000024559)
NAME_4	ANCESTRAL SPECIES	208				ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000159122.h	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT01020000230616	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448
Mummichog	MODERN SPECIES	2373			svopl (ENSFHEG00000013362)	ENSFHEG00000013346	ENSFHEG00000013050	ENSFHEG00000012930	ENSFHEG00000012888	irf5 (ENSFHEG00000012870)	tnpo3 (ENSFHEG00000012859)	opn1sw1 (ENSFHEG00000012792)	opn1sw1 (ENSFHEG00000012300)	calua (ENSFHEG00000012115)	ncaph2 (ENSFHEG00000012107)	sco2 (ENSFHEG00000012099)	ENSFHEG00000012086	kcnd2 (ENSFHEG00000012076) ##22	ENSFHEG00000012052	tspan12 (ENSFHEG00000012042) #23	ing3 (ENSFHEG00000012033) #24	ENSFHEG00000011962	wnt16 (ENSFHEG00000011958) #26	ENSFHEG00000011953	ENSFHEG00000011925	ovch1 (ENSFHEG00000011871)	ENSFHEG00000011857	FLNC (ENSFHEG00000011850)	socs2 (ENSFHEG00000011710)	cradd (ENSFHEG00000011703)	PTPRO (ENSFHEG00000011691)	C11orf98 (ENSFHEG00000011600)	ENSFHEG00000011576
Aplocheiloidei	ANCESTRAL SPECIES	364																ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24
Turquoise killifish	MODERN SPECIES	245																kcnd2 (ENSNFUG00015021533) ##22	tspan12 (ENSNFUG00015021532) #23	ING3 (ENSNFUG00015021519) #24	ENSNFUG00015021513
Oryzias	ANCESTRAL SPECIES	20	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b	ENSGT00940000156375	ENSGT00940000177211.a.a	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000153588.a.a.a
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000177211.a.a	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000153588.a.a.a
Javanese ricefish	MODERN SPECIES	15	pdzrn4 (ENSOJAG00000018083)	ARHGAP8 (ENSOJAG00000018087)	cradd (ENSOJAG00000018099)	socs2 (ENSOJAG00000018105)	opn1sw1 (ENSOJAG00000018114)	irf5 (ENSOJAG00000019090)	ENSOJAG00000019132	atp6v1f (ENSOJAG00000019162)	lamtor4 (ENSOJAG00000019170)	ARF5 (ENSOJAG00000019186)	gcc1 (ENSOJAG00000019243)	ENSOJAG00000019823	ENSOJAG00000020049	sco2 (ENSOJAG00000020090)	ncaph2 (ENSOJAG00000020095)	kcnd2 (ENSOJAG00000020108) ##22	tspan12 (ENSOJAG00000020118) #23	ing3 (ENSOJAG00000020153) #24	wnt16 (ENSOJAG00000020224) #26	ENSOJAG00000020998	dera (ENSOJAG00000021578)	msrb3 (ENSOJAG00000021696)
Indian medaka	MODERN SPECIES	2	ENSOMEG00000020882	ENSOMEG00000020875	atp6v1f (ENSOMEG00000020862)	lamtor4 (ENSOMEG00000020846)	zgc:77650 (ENSOMEG00000020821)	dennd6b (ENSOMEG00000020800)	gcc1 (ENSOMEG00000020737)	lta4h (ENSOMEG00000020722)	ENSOMEG00000020692	ENSOMEG00000020672	svopl (ENSOMEG00000020637)	ENSOMEG00000020598	ENSOMEG00000020555	ENSOMEG00000020540	sco2 (ENSOMEG00000000538)	kcnd2 (ENSOMEG00000020493) ##22	tspan12 (ENSOMEG00000020480) #23	ing3 (ENSOMEG00000020463) #24	CPED1 (ENSOMEG00000020429) #25	wnt16 (ENSOMEG00000020374) #26	ENSOMEG00000020342	ENSOMEG00000020329	ovch1 (ENSOMEG00000020287)	FLNC (ENSOMEG00000020241)	ENSOMEG00000020166
Oryzias_a	ANCESTRAL SPECIES	96	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b	ENSGT00940000156375	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000159122.h	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000153588.a.a.a
Japanese Medaka HdrR	MODERN SPECIES	15	lamtor4 (ENSORLG00000019289)	arf5 (ENSORLG00000020571)	gcc1 (ENSORLG00000022380)	dennd6b (ENSORLG00000020574)	lta4h (ENSORLG00000020578)	ENSORLG00000026298	ENSORLG00000026478	ENSORLG00000021810	ENSORLG00000023456	svopl (ENSORLG00000019435)	ENSORLG00000029974	ENSORLG00000030249	ENSORLG00000024812	ncaph2 (ENSORLG00000019964)	sco2 (ENSORLG00000019958)	kcnd2 (ENSORLG00000021857) ##22	tspan12 (ENSORLG00000021979) #23	ENSORLG00000022124	ing3 (ENSORLG00000023901) #24	ENSORLG00000023859	CPED1 (ENSORLG00000025107) #25	wnt16 (ENSORLG00000018300) #26	ENSORLG00000029421	ENSORLG00000028346	ENSORLG00000026269	ovch1 (ENSORLG00000018277)	ENSORLG00000019909
Chinese medaka	MODERN SPECIES	4024																kcnd2 (ENSOSIG00000013434) ##22
Ovalentaria_B	ANCESTRAL SPECIES	42					ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.b	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A
Cichlidae	ANCESTRAL SPECIES	63					ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT01100000263483.E.b.b	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b.e.a	ENSGT00940000163529	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000156375	ENSGT00390000005529.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00390000015216 #25	ENSGT00940000156619 #24	ENSGT00510000047764 #23	ENSGT01100000263483.E.b.b.t	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000157480 #26	ENSGT00390000015216 #25	ENSGT00940000156619 #24	ENSGT00510000047764 #23	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00940000179738	ENSGT00950000183089.c.b	ENSGT00940000161860	ENSGT00940000158576.b	ENSGT00940000164299.b.a.d	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000180874	ENSGT00390000015216 #25	ENSGT00940000156619 #24	ENSGT00510000047764 #23	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00940000179738	ENSGT00950000183089.c.b	ENSGT00940000161860	ENSGT00940000158576.b	ENSGT00940000164299.b.a.d	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615
Burton s mouthbrooder	MODERN SPECIES	487	ENSHBUG00000003402	CPED1 (ENSHBUG00000003418) #25	ing3 (ENSHBUG00000003451) #24	tspan12 (ENSHBUG00000003477) #23	gpr19 (ENSHBUG00000003485)	crebl2 (ENSHBUG00000003492)	dusp16 (ENSHBUG00000003506)	eps8a (ENSHBUG00000000077)	ENSHBUG00000003575	ENSHBUG00000000082	socs2 (ENSHBUG00000003594)	FLNC (ENSHBUG00000003663)	ENSHBUG00000003680	sco2 (ENSHBUG00000003685)	ncaph2 (ENSHBUG00000003702)	kcnd2 (ENSHBUG00000003729) ##22	histh1l1 (ENSHBUG00000003743)	ENSHBUG00000003783	H4C15 (ENSHBUG00000003790)	ENSHBUG00000003796	KCNA5 (ENSHBUG00000003804)	KCNA1 (ENSHBUG00000003814)	ADISSP (ENSHBUG00000003829)	vax2 (ENSHBUG00000003841)	ENSHBUG00000003856	tex261 (ENSHBUG00000003871)	ENSHBUG00000003892	ENSHBUG00000003905	f13a1b (ENSHBUG00000003951)
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000180874	ENSGT00390000015216 #25	ENSGT00940000156619 #24	ENSGT00510000047764 #23	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00940000179738	ENSGT00950000183089.c.b	ENSGT00940000161860	ENSGT00940000158576.b	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00940000180874	ENSGT00390000015216 #25	ENSGT00940000156619 #24	ENSGT00510000047764 #23	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00950000183089.c.b	ENSGT01100000263567.a.a.d.b.l	ENSGT01100000263506.a.d.fb	ENSGT01020000230360.d.f	ENSGT00940000156944.a.a	ENSGT00990000203553.c.a.a.b.a.a.b.a.a.b	ENSGT00940000161860	ENSGT00940000158576.b	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890
Eastern happy	MODERN SPECIES	8	stab2 (ENSACLG00000006733)	wnt16 (ENSACLG00000006773) #26	ing3 (ENSACLG00000006777) #24	tspan12 (ENSACLG00000006802) #23	gpr19 (ENSACLG00000006815)	crebl2 (ENSACLG00000006824)	dusp16 (ENSACLG00000006831)	eps8a (ENSACLG00000006856)	PTPRO (ENSACLG00000006942)	ENSACLG00000007016	socs2 (ENSACLG00000007022)	FLNC (ENSACLG00000007030)	ENSACLG00000007078	sco2 (ENSACLG00000007084)	ncaph2 (ENSACLG00000007091)	kcnd2 (ENSACLG00000007563) ##22	si:ch73-368j24.12 (ENSACLG00000007578)	ENSACLG00000007594	ENSACLG00000007642	KCNA5 (ENSACLG00000007649)	ENSACLG00000007661	ARHGAP8 (ENSACLG00000008301)	PHF21B (ENSACLG00000008319)	nup50 (ENSACLG00000008324)	kiaa0930 (ENSACLG00000008334)	fbxo7 (ENSACLG00000008351)	rtcb (ENSACLG00000008367)	xpot (ENSACLG00000008404)	rpl18a (ENSACLG00000008450)	ENSACLG00000008466	pthlha (ENSACLG00000008477)
Zebra mbuna	MODERN SPECIES	1099	CPED1 (ENSMZEG00005018247) #25	ing3 (ENSMZEG00005018257) #24	tspan12 (ENSMZEG00005018266) #23	gpr19 (ENSMZEG00005018269)	crebl2 (ENSMZEG00005018274)	dusp16 (ENSMZEG00005018278)	eps8a (ENSMZEG00005018285)	PTPRO (ENSMZEG00005018303)	ENSMZEG00005018331	socs2 (ENSMZEG00005018335)	FLNC (ENSMZEG00005018342)	ENSMZEG00005018357	sco2 (ENSMZEG00005018361)	ncaph2 (ENSMZEG00005018364)	ENSMZEG00005018368	kcnd2 (ENSMZEG00005018374) ##22	ENSMZEG00005018379	ENSMZEG00005018382	ENSMZEG00005018873	KCNA5 (ENSMZEG00005018878)	ENSMZEG00005018883	ARHGAP8 (ENSMZEG00005018894)	PHF21B (ENSMZEG00005018911)	ENSMZEG00005018921	nup50 (ENSMZEG00005018926)	kiaa0930 (ENSMZEG00005018930)	fbxo7 (ENSMZEG00005018936)	rtcb (ENSMZEG00005018942)	xpot (ENSMZEG00005018955)	rpl18a (ENSMZEG00005018966)	cbln10 (ENSMZEG00005018976)
P. nyererei	MODERN SPECIES	352	wnt16 (ENSPNYG00000000777) #26	ing3 (ENSPNYG00000000731) #24	tspan12 (ENSPNYG00000000698) #23	gpr19 (ENSPNYG00000000688)	crebl2 (ENSPNYG00000023037)	dusp16 (ENSPNYG00000023033)	eps8a (ENSPNYG00000023025)	PTPRO (ENSPNYG00000022994)	ENSPNYG00000022975	socs2 (ENSPNYG00000022965)	FLNC (ENSPNYG00000022934)	ENSPNYG00000022918	sco2 (ENSPNYG00000022911)	ENSPNYG00000022905	ENSPNYG00000022900	kcnd2 (ENSPNYG00000022895) ##22	ENSPNYG00000022885	ENSPNYG00000022875	ENSPNYG00000022857	ENSPNYG00000022850	KCNA5 (ENSPNYG00000022842)	ENSPNYG00000022839	ARHGAP8 (ENSPNYG00000022829)	PHF21B (ENSPNYG00000022819)	nup50 (ENSPNYG00000022806)	kiaa0930 (ENSPNYG00000022791)	fbxo7 (ENSPNYG00000022773)	rtcb (ENSPNYG00000022760)	xpot (ENSPNYG00000022747)	rpl18a (ENSPNYG00000022733)	pthlha (ENSPNYG00000022731)
Lyretail cichlid	MODERN SPECIES	291	stab2 (ENSNBRG00000018108)	wnt16 (ENSNBRG00000018048) #26	ing3 (ENSNBRG00000018008) #24	tspan12 (ENSNBRG00000017980) #23	gpr19 (ENSNBRG00000017972)	crebl2 (ENSNBRG00000017962)	dusp16 (ENSNBRG00000017937)	eps8a (ENSNBRG00000017888)	PTPRO (ENSNBRG00000017713)	ENSNBRG00000017690	socs2 (ENSNBRG00000017619)	FLNC (ENSNBRG00000017551)	ENSNBRG00000017517	sco2 (ENSNBRG00000017498)	ENSNBRG00000017491	kcnd2 (ENSNBRG00000017473) ##22	ENSNBRG00000017463	ENSNBRG00000017451	ENSNBRG00000017433	ENSNBRG00000017422	KCNA5 (ENSNBRG00000017411)	ENSNBRG00000017374	ARHGAP8 (ENSNBRG00000017345)	PHF21B (ENSNBRG00000017322)	nup50 (ENSNBRG00000017297)	kiaa0930 (ENSNBRG00000017274)	fbxo7 (ENSNBRG00000017228)	rtcb (ENSNBRG00000017202)	xpot (ENSNBRG00000017136)	rpl18a (ENSNBRG00000017030)	pthlha (ENSNBRG00000017000)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000018710	ENSONIG00000042373	gpr19 (ENSONIG00000020773)	crebl2 (ENSONIG00000007545)	dusp16 (ENSONIG00000007543)	ENSONIG00000037215	eps8a (ENSONIG00000007534)	PTPRO (ENSONIG00000007528)	cradd (ENSONIG00000007525)	socs2 (ENSONIG00000007523)	FLNC (ENSONIG00000007519)	ENSONIG00000007517	sco2 (ENSONIG00000007516)	ncaph2 (ENSONIG00000007505)	ENSONIG00000039312	kcnd2 (ENSONIG00000040524) ##22	ENSONIG00000007504	ENSONIG00000040068	ENSONIG00000020768	ENSONIG00000031263	KCNA5 (ENSONIG00000020772)	KCNA1 (ENSONIG00000020771)	ENSONIG00000020770	ARHGAP8 (ENSONIG00000007499)	PHF21B (ENSONIG00000041576)	nup50 (ENSONIG00000007489)	kiaa0930 (ENSONIG00000007482)	fbxo7 (ENSONIG00000007479)	rtcb (ENSONIG00000007474)	xpot (ENSONIG00000007471)	rpl18a (ENSONIG00000037928)
Midas cichlid	MODERN SPECIES	1105												ENSACIG00000003946	ENSACIG00000003952	sco2 (ENSACIG00000003963)	ncaph2 (ENSACIG00000003973)	kcnd2 (ENSACIG00000004023) ##22	ENSACIG00000004040	tspan12 (ENSACIG00000004049) #23	ing3 (ENSACIG00000004072) #24	wnt16 (ENSACIG00000004104) #26	stab2 (ENSACIG00000004189)	ovch1 (ENSACIG00000004844)	ENSACIG00000004940
Pomacentridae	ANCESTRAL SPECIES	75									ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.c.a	ENSGT00940000163017	ENSGT00530000063472.a	ENSGT00940000156375	ENSGT00940000177211.a.b	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A
Pomacentridae_A	ANCESTRAL SPECIES	59	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00940000163342.b.a.c.a	ENSGT00730000111360.a	ENSGT00640000091554	ENSGT00550000074972	ENSGT00940000155241.c	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.c.a	ENSGT00940000163017	ENSGT00530000063472.a	ENSGT00940000156375	ENSGT00940000177211.a.b	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A
Amphiprion	ANCESTRAL SPECIES	77	ENSGT00940000159490	ENSGT00940000154256.ac	ENSGT00440000033468	ENSGT00940000163342.b.a.c.a	ENSGT00730000111360.a	ENSGT00640000091554	ENSGT00550000074972	ENSGT00940000155241.c	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157480 #26	ENSGT00940000156566.c.a	ENSGT00940000163017	ENSGT00530000063472.a	ENSGT00940000156375	ENSGT00940000177211.a.b	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A
Clown anemonefish	MODERN SPECIES	3473														sco2 (ENSAOCG00000015595)	ncaph2 (ENSAOCG00000015579)	kcnd2 (ENSAOCG00000015567) ##22	tspan12 (ENSAOCG00000015547) #23	ENSAOCG00000002411	slc22a15 (ENSAOCG00000015503)	ENSAOCG00000015458	ENSAOCG00000015439	ENSAOCG00000015425	kif11 (ENSAOCG00000002030)	EGR2 (ENSAOCG00000015371)	adob (ENSAOCG00000015344)	ZNF365 (ENSAOCG00000015333)	plekha3 (ENSAOCG00000015315)
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000024229	calua (ENSAPEG00000024235)	opn1sw1 (ENSAPEG00000024257)	opn1sw1 (ENSAPEG00000024262)	tnpo3 (ENSAPEG00000024300)	irf5 (ENSAPEG00000024328)	ENSAPEG00000024335	dennd6b (ENSAPEG00000024340)	PTPRO (ENSAPEG00000024366)	ENSAPEG00000024406	socs2 (ENSAPEG00000024410)	FLNC (ENSAPEG00000024425)	ENSAPEG00000024451	sco2 (ENSAPEG00000024462)	ncaph2 (ENSAPEG00000024465)	kcnd2 (ENSAPEG00000024473) ##22	tspan12 (ENSAPEG00000024481) #23	ing3 (ENSAPEG00000024493) #24	ENSAPEG00000024502	wnt16 (ENSAPEG00000024504) #26	ENSAPEG00000024512	ENSAPEG00000024520	ENSAPEG00000024525	ENSAPEG00000024545	lta4h (ENSAPEG00000024559)	ENSAPEG00000024582	ENSAPEG00000024586	ENSAPEG00000024588	svopl (ENSAPEG00000024594)	atp6v1f (ENSAPEG00000024605)	lamtor4 (ENSAPEG00000024609)
Spiny chromis	MODERN SPECIES	784										ENSAPOG00000010705	socs2 (ENSAPOG00000010716)	FLNC (ENSAPOG00000010876)	ENSAPOG00000010920	sco2 (ENSAPOG00000010931)	ncaph2 (ENSAPOG00000010958)	kcnd2 (ENSAPOG00000010980) ##22	tspan12 (ENSAPOG00000011197) #23
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	46	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
European seabass	MODERN SPECIES	12	ENSDLAG00005014893	tbk1 (ENSDLAG00005014011)	gpr19 (ENSDLAG00005027573)	crebl2 (ENSDLAG00005028749)	dusp16 (ENSDLAG00005031476)	ENSDLAG00005019098	ENSDLAG00005032147	ENSDLAG00005023759	ENSDLAG00005023493	cradd (ENSDLAG00005024603)	socs2 (ENSDLAG00005027365)	ncaph2 (ENSDLAG00005014061)	sco2 (ENSDLAG00005003872)	ENSDLAG00005027766	ENSDLAG00005014174	kcnd2 (ENSDLAG00005011187) ##22	tspan12 (ENSDLAG00005031559) #23	ing3 (ENSDLAG00005007310) #24	CPED1 (ENSDLAG00005032049) #25	ENSDLAG00005033048	stab2 (ENSDLAG00005003809)	ENSDLAG00005003686	ENSDLAG00005034901	ENSDLAG00005028118	ENSDLAG00005021542	ssbp1 (ENSDLAG00005033320)	creb3l2 (ENSDLAG00005021521)	ENSDLAG00005019339	RASSF3 (ENSDLAG00005027471)	gnsa (ENSDLAG00005006844)	TBC1D30 (ENSDLAG00005007309)
Large yellow croaker	MODERN SPECIES	482	ENSLCRG00005003533	C14orf132 (ENSLCRG00005003534)	ENSLCRG00005003535	ENSLCRG00005003536	ENSLCRG00005003537	CNIH3 (ENSLCRG00005003538)	ENSLCRG00005003540	rpl7l1 (ENSLCRG00005003541)	slc5a6a (ENSLCRG00005003545)	ENSLCRG00005003547	cradd (ENSLCRG00005003769)	socs2 (ENSLCRG00005003771)	ncaph2 (ENSLCRG00005003772)	sco2 (ENSLCRG00005003774)	ENSLCRG00005003775	kcnd2 (ENSLCRG00005004231) ##22	tspan12 (ENSLCRG00005004235) #23	ing3 (ENSLCRG00005004237) #24	CPED1 (ENSLCRG00005004252) #25	wnt16 (ENSLCRG00005004268) #26	ovch1 (ENSLCRG00005004438)	parp12b (ENSLCRG00005004442)	ENSLCRG00005004448	svopl (ENSLCRG00005004454)	mical3b (ENSLCRG00005004511)	lta4h (ENSLCRG00005004550)	dennd6b (ENSLCRG00005004610)	gcc1 (ENSLCRG00005005115)	ENSLCRG00005005116	lamtor4 (ENSLCRG00005005122)	atp6v1f (ENSLCRG00005005123)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a
Cottioidei	ANCESTRAL SPECIES	55	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529	ENSGT00940000156375	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a
Lumpfish	MODERN SPECIES	15	lrp6 (ENSCLMG00005015932)	tbk1 (ENSCLMG00005018688)	gpr19 (ENSCLMG00005018689)	crebl2 (ENSCLMG00005018690)	dusp16 (ENSCLMG00005018691)	eps8a (ENSCLMG00005018692)	PTPRO (ENSCLMG00005018694)	ENSCLMG00005018697	ENSCLMG00005018698	ENSCLMG00005018699	cradd (ENSCLMG00005018700)	socs2 (ENSCLMG00005018701)	ncaph2 (ENSCLMG00005018702)	sco2 (ENSCLMG00005018704)	FLNC (ENSCLMG00005002811)	kcnd2 (ENSCLMG00005002899) ##22	tspan12 (ENSCLMG00005002973) #23	ing3 (ENSCLMG00005003001) #24	wnt16 (ENSCLMG00005003179) #26	ENSCLMG00005003195	stab2 (ENSCLMG00005003197)	ovch1 (ENSCLMG00005003199)	ENSCLMG00005003238	ENSCLMG00005003242	svopl (ENSCLMG00005003254)	mical3b (ENSCLMG00005003474)	lta4h (ENSCLMG00005003481)	atp6v1f (ENSCLMG00005004143)	lamtor4 (ENSCLMG00005004145)	zgc:77650 (ENSCLMG00005004146)	gcc1 (ENSCLMG00005004147)
Stickleback	MODERN SPECIES	591	pthlha (ENSGACG00000000596)	C11orf98 (ENSGACG00000000597)	lrp6 (ENSGACG00000000598)	tbk1 (ENSGACG00000000607)	gpr19 (ENSGACG00000000611)	crebl2 (ENSGACG00000000613)	dusp16 (ENSGACG00000000616)	eps8a (ENSGACG00000000619)	PTPRO (ENSGACG00000000623)	cradd (ENSGACG00000000634)	socs2 (ENSGACG00000000635)	ncaph2 (ENSGACG00000000636)	sco2 (ENSGACG00000000639)	ENSGACG00000000640	FLNC (ENSGACG00000000642)	kcnd2 (ENSGACG00000000650) ##22	tspan12 (ENSGACG00000000652) #23	ing3 (ENSGACG00000000654) #24	ENSGACG00000000655 #25	wnt16 (ENSGACG00000000657) #26	ovch1 (ENSGACG00000000658)	ENSGACG00000000660	svopl (ENSGACG00000000662)	mical3b (ENSGACG00000000668)	ENSGACG00000000673	lta4h (ENSGACG00000000675)	atp6v1f (ENSGACG00000000683)	lamtor4 (ENSGACG00000000684)	arf5 (ENSGACG00000000686)	gcc1 (ENSGACG00000000688)	dennd6b (ENSGACG00000000689)
Perciformes_a	ANCESTRAL SPECIES	58										ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000159122.h	ENSGT00390000004323.a	ENSGT00390000014443	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b
Pike perch	MODERN SPECIES	253										FLNC (ENSSLUG00000021714)	ENSSLUG00000021665	ENSSLUG00000021660	ENSSLUG00000021657	sco2 (ENSSLUG00000021652)	ENSSLUG00000021647	kcnd2 (ENSSLUG00000021619) ##22	tspan12 (ENSSLUG00000021610) #23	ing3 (ENSSLUG00000021599) #24	ENSSLUG00000021591	ENSSLUG00000021587	ENSSLUG00000021584	CPED1 (ENSSLUG00000021571) #25	wnt16 (ENSSLUG00000021565) #26	ovch1 (ENSSLUG00000021558)	parp12b (ENSSLUG00000021553)	svopl (ENSSLUG00000021536)	ENSSLUG00000021533
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
Anabantaria	ANCESTRAL SPECIES	27	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
Zig-zag eel	MODERN SPECIES	15	C11orf98 (ENSMAMG00000027792)	ENSMAMG00000027690	ENSMAMG00000020748	ENSMAMG00000020771	crebl2 (ENSMAMG00000020787)	ENSMAMG00000020803	ENSMAMG00000020809	ENSMAMG00000020816	ENSMAMG00000020840	cradd (ENSMAMG00000020862)	socs2 (ENSMAMG00000027551)	ncaph2 (ENSMAMG00000020866)	sco2 (ENSMAMG00000020874)	ENSMAMG00000020878	ENSMAMG00000020885	kcnd2 (ENSMAMG00000020906) ##22	tspan12 (ENSMAMG00000026832) #23	ing3 (ENSMAMG00000020912) #24	CPED1 (ENSMAMG00000020919) #25	wnt16 (ENSMAMG00000020921) #26	stab2 (ENSMAMG00000020926)	ENSMAMG00000020966	parp12b (ENSMAMG00000021004)	ENSMAMG00000021019	svopl (ENSMAMG00000021056)	ENSMAMG00000021076	TNPO3 (ENSMAMG00000021096)	ENSMAMG00000021110	ENSMAMG00000021123	ENSMAMG00000025000	ATP6V1F (ENSMAMG00000021154)
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT01030000234601.n.a.a.b.a	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00390000005529.b	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053
Climbing perch	MODERN SPECIES	14	ENSATEG00000000811	ENSATEG00000000814	ENSATEG00000000851	tbk1 (ENSATEG00000000952)	gpr19 (ENSATEG00000001050)	crebl2 (ENSATEG00000025249)	dusp16 (ENSATEG00000001097)	ENSATEG00000001135	ENSATEG00000001206	cradd (ENSATEG00000001460)	socs2 (ENSATEG00000029174)	ncaph2 (ENSATEG00000001488)	sco2 (ENSATEG00000001500)	ENSATEG00000001513	ENSATEG00000001587	kcnd2 (ENSATEG00000001819) ##22	tspan12 (ENSATEG00000029209) #23	ing3 (ENSATEG00000001895) #24	ENSATEG00000026395 #25	wnt16 (ENSATEG00000025535) #26	stab2 (ENSATEG00000001977)	ENSATEG00000026682	parp12b (ENSATEG00000002255)	ENSATEG00000028301	ENSATEG00000028819	ENSATEG00000002301	svopl (ENSATEG00000002451)	ENSATEG00000002609	ENSATEG00000002725	mical3b (ENSATEG00000002867)	ENSATEG00000002930
Siamese fighting fish	MODERN SPECIES	20	pthlha (ENSBSLG00000002140)	C11orf98 (ENSBSLG00000002152)	ENSBSLG00000002168	lrp6 (ENSBSLG00000002259)	tbk1 (ENSBSLG00000002592)	gpr19 (ENSBSLG00000002754)	crebl2 (ENSBSLG00000002762)	dusp16 (ENSBSLG00000002797)	PTPRO (ENSBSLG00000003992)	cradd (ENSBSLG00000004438)	socs2 (ENSBSLG00000004439)	ncaph2 (ENSBSLG00000004443)	sco2 (ENSBSLG00000004451)	ENSBSLG00000004454	FLNC (ENSBSLG00000005062)	kcnd2 (ENSBSLG00000006069) ##22	tspan12 (ENSBSLG00000006073) #23	ing3 (ENSBSLG00000006080) #24	ENSBSLG00000006338 #25	wnt16 (ENSBSLG00000006520) #26	stab2 (ENSBSLG00000006731)	ENSBSLG00000007282	parp12b (ENSBSLG00000007288)	svopl (ENSBSLG00000007322)	ENSBSLG00000007385	lta4h (ENSBSLG00000007403)	dennd6b (ENSBSLG00000007523)	gcc1 (ENSBSLG00000007578)	arf5 (ENSBSLG00000007583)	lamtor4 (ENSBSLG00000007598)	atp6v1f (ENSBSLG00000007601)
Carangaria	ANCESTRAL SPECIES	28	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b	ENSGT00390000016053
Carangaria_A	ANCESTRAL SPECIES	69	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000177211.a.b
Seriola	ANCESTRAL SPECIES	104	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b.lc.a.a	ENSGT01070000256091	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000177211.a.b	ENSGT00940000181598
Greater amberjack	MODERN SPECIES	85	C11orf98 (ENSSDUG00000012443)	ENSSDUG00000012429	lrp6 (ENSSDUG00000012323)	tbk1 (ENSSDUG00000012247)	gpr19 (ENSSDUG00000012227)	crebl2 (ENSSDUG00000012216)	dusp16 (ENSSDUG00000012199)	eps8a (ENSSDUG00000012072)	PTPRO (ENSSDUG00000011991)	cradd (ENSSDUG00000011973)	socs2 (ENSSDUG00000011967)	ncaph2 (ENSSDUG00000011924)	sco2 (ENSSDUG00000011906)	ENSSDUG00000011884	FLNC (ENSSDUG00000011793)	kcnd2 (ENSSDUG00000011772) ##22	tspan12 (ENSSDUG00000011756) #23	ing3 (ENSSDUG00000011731) #24	wnt16 (ENSSDUG00000011687) #26	ENSSDUG00000011626	ENSSDUG00000011596	ovch1 (ENSSDUG00000011566)	parp12b (ENSSDUG00000011543)	ENSSDUG00000011529	svopl (ENSSDUG00000011494)	ENSSDUG00000011475	ENSSDUG00000011467	ENSSDUG00000011460
Pleuronectoidei	ANCESTRAL SPECIES	61	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000181823	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b	ENSGT00390000016053	ENSGT00390000013208
Turbot	MODERN SPECIES	11	gpr19 (ENSSMAG00000010603)	tbk1 (ENSSMAG00000010611)	ENSSMAG00000010656	ENSSMAG00000010708	ENSSMAG00000028724	ENSSMAG00000010736	ENSSMAG00000035764	ENSSMAG00000036104	ENSSMAG00000025364	ENSSMAG00000032303	ENSSMAG00000010858	ENSSMAG00000010921	ENSSMAG00000010937	ENSSMAG00000021578	ENSSMAG00000010959	kcnd2 (ENSSMAG00000011026) ##22	tspan12 (ENSSMAG00000027018) #23	ing3 (ENSSMAG00000011057) #24	ENSSMAG00000030005 #25	ENSSMAG00000031420	wnt16 (ENSSMAG00000011086) #26	ENSSMAG00000011097	ENSSMAG00000024126	ENSSMAG00000011235	mical3b (ENSSMAG00000011272)	ENSSMAG00000011295	ENSSMAG00000011361	ENSSMAG00000013453	ENSSMAG00000013342	ENSSMAG00000027042	ATP6V1F (ENSSMAG00000030672)
Tongue sole	MODERN SPECIES	18	lrp6 (ENSCSEG00000003824)	tbk1 (ENSCSEG00000003810)	gpr19 (ENSCSEG00000003807)	crebl2 (ENSCSEG00000003805)	dusp16 (ENSCSEG00000003784)	ENSCSEG00000003779	eps8a (ENSCSEG00000003771)	PTPRO (ENSCSEG00000003755)	cradd (ENSCSEG00000003750)	cradd (ENSCSEG00000003747)	socs2 (ENSCSEG00000003743)	ENSCSEG00000003739	sco2 (ENSCSEG00000003737)	ENSCSEG00000003728	FLNC (ENSCSEG00000003696)	kcnd2 (ENSCSEG00000003689) ##22	tspan12 (ENSCSEG00000003683) #23	ing3 (ENSCSEG00000003675) #24	wnt16 (ENSCSEG00000003672) #26	stab2 (ENSCSEG00000003642)	ENSCSEG00000003630	ovch1 (ENSCSEG00000003609)	ENSCSEG00000003598	svopl (ENSCSEG00000003571)	ENSCSEG00000003562	ENSCSEG00000003555	ENSCSEG00000003549	rab3ip (ENSCSEG00000003533)	ENSCSEG00000003529	UPF2 (ENSCSEG00000003520)	ENSCSEG00000003517
Tiger tail seahorse	MODERN SPECIES	472	abcc9 (ENSHCOG00000004171)	ENSHCOG00000004184	ECHDC3 (ENSHCOG00000004203)	kcnj8 (ENSHCOG00000004274)	ENSHCOG00000000114	gata3 (ENSHCOG00000004304)	acot15 (ENSHCOG00000004322)	CD9 (ENSHCOG00000004354)	cwf19l1 (ENSHCOG00000004362)	dmtf1 (ENSHCOG00000004386)	tmem243b (ENSHCOG00000004408)	ENSHCOG00000004416	ENSHCOG00000004420	ENSHCOG00000004431	ENSHCOG00000004454	kcnd2 (ENSHCOG00000004507) ##22	tspan12 (ENSHCOG00000004531) #23	cct2 (ENSHCOG00000004567)	nots (ENSHCOG00000004940)	ENSHCOG00000004983	ENSHCOG00000005005	TYMP (ENSHCOG00000005025)	lsm8 (ENSHCOG00000005037) #20	grip1 (ENSHCOG00000005043)	ENSHCOG00000005052	kin (ENSHCOG00000005077)	itih2 (ENSHCOG00000005087)	ITIH5 (ENSHCOG00000005148)	ENSHCOG00000000138	tmem110l (ENSHCOG00000005181)	SFMBT2 (ENSHCOG00000005203)
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.b	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT00530000063702.a.b	ENSGT00940000163017	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c.sc	ENSGT00940000153678.a.a	ENSGT00940000175378	ENSGT00390000006760	ENSGT00940000155662.e.a
Salmoninae	ANCESTRAL SPECIES	378	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000164702.a.i	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT00940000157983.`b.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e	ENSGT00390000004323.a.c.b	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764.d #23	ENSGT00940000156619.d #24	ENSGT00390000015216.`b #25	ENSGT00390000014443.f	ENSGT00390000004323.a.c.a
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	75	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.b	ENSGT00390000014448.q.b	ENSGT00940000157983.`b.b	ENSGT00390000014443.f	ENSGT00390000004323.a.c.b	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a ##22	ENSGT00510000047764.c.b #23	ENSGT00510000047764.c.a.a #23	ENSGT00940000156619.c #24	ENSGT00390000015216.ab #25	ENSGT00940000157480.a #26	ENSGT00940000156566	ENSGT00530000063702.a.b.f	ENSGT00940000163017.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158027	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c	ENSGT00390000006485.c.sc.d	ENSGT00940000153678.a.a.d	ENSGT00940000175378
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01050000244850.A.a.o.b.c	ENSGT00940000157983.`b.b	ENSGT00390000014443.f	ENSGT00390000004323.a.c.b	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a ##22	ENSGT00510000047764.c.a.a #23	ENSGT00940000156619.c #24	ENSGT00390000015216.ab #25	ENSGT00940000157480.a #26	ENSGT00940000156566	ENSGT00530000063702.a.b.f	ENSGT00940000163017.a.b	ENSGT00940000158027.t.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c	ENSGT00390000006485.c.sc.d	ENSGT00940000153678.a.a.d	ENSGT00940000175378	ENSGT00940000155662.e.a.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01050000244850.A.a.o.b.c	ENSGT00390000014448.r	ENSGT00940000157983.`b.b	ENSGT00390000014443.f	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a ##22	ENSGT00510000047764.c.a.a #23	ENSGT00940000156619.c #24	ENSGT00390000015216.ab #25	ENSGT00940000157480.a #26	ENSGT00940000156566	ENSGT00530000063702.a.b.f	ENSGT00940000163017.a.b	ENSGT00940000158027.t.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c	ENSGT00390000006485.c.sc.d	ENSGT00940000153678.a.a.d	ENSGT00940000155662.e.a.d.a	ENSGT00940000158662.k
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005018484	mcm10 (ENSOTSG00005018490)	ucmaa (ENSOTSG00005018519)	phyh (ENSOTSG00005018522)	cdk17 (ENSOTSG00005018538)	ELK3 (ENSOTSG00005019785)	hcfc2 (ENSOTSG00005019786)	CEP83 (ENSOTSG00005019788)	ENSOTSG00005019791	ENSOTSG00005019793	cradd (ENSOTSG00005019795)	socs2 (ENSOTSG00005019796)	ncaph2 (ENSOTSG00005002070)	ENSOTSG00005002075	FLNC (ENSOTSG00005002281)	kcnd2 (ENSOTSG00005012035) ##22	tspan12 (ENSOTSG00005012036) #23	ing3 (ENSOTSG00005012041) #24	CPED1 (ENSOTSG00005012068) #25	wnt16 (ENSOTSG00005012071) #26	stab2 (ENSOTSG00005012081)	lmf2b (ENSOTSG00005012241)	ovch1 (ENSOTSG00005012267)	TMTC1 (ENSOTSG00005012269)	ENSOTSG00005012270	ipo8 (ENSOTSG00005012285)	caprin2 (ENSOTSG00005012459)	sinhcaf (ENSOTSG00005012461)	dennd5b (ENSOTSG00005012467)	pnpla3 (ENSOTSG00005013567)	ENSOTSG00005013571
Coho salmon	MODERN SPECIES	29	ccdc3a (ENSOKIG00005006045)	optn (ENSOKIG00005006057)	ENSOKIG00005006068	mcm10 (ENSOKIG00005006093)	PHYH (ENSOKIG00005006307)	cdk17 (ENSOKIG00005006347)	ELK3 (ENSOKIG00005006569)	hcfc2 (ENSOKIG00005006594)	ENSOKIG00005006634	ENSOKIG00005007138	cradd (ENSOKIG00005007214)	socs2 (ENSOKIG00005007218)	ncaph2 (ENSOKIG00005007230)	ENSOKIG00005007254	FLNC (ENSOKIG00005007362)	kcnd2 (ENSOKIG00005008748) ##22	tspan12 (ENSOKIG00005008768) #23	ing3 (ENSOKIG00005008783) #24	CPED1 (ENSOKIG00005008811) #25	wnt16 (ENSOKIG00005008834) #26	stab2 (ENSOKIG00005008963)	lmf2b (ENSOKIG00005010030)	ovch1 (ENSOKIG00005010064)	TMTC1 (ENSOKIG00005010111)	ENSOKIG00005010525	ipo8 (ENSOKIG00005010552)	caprin2 (ENSOKIG00005010624)	sinhcaf (ENSOKIG00005010636)	dennd5b (ENSOKIG00005010704)	ENSOKIG00005012045	ENSOKIG00005012047
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000038162	PHYH (ENSOMYG00000038226)	cdk17 (ENSOMYG00000038585)	ENSOMYG00000038685	ENSOMYG00000038695	ENSOMYG00000038721	ENSOMYG00000038759	cradd (ENSOMYG00000038792)	SOCS2a2 (ENSOMYG00000058535)	ncaph2 (ENSOMYG00000035152)	sco2 (ENSOMYG00000035171)	ENSOMYG00000064525	ENSOMYG00000035855	ENSOMYG00000074324	ENSOMYG00000040476	kcnd2 (ENSOMYG00000040483) ##22	ENSOMYG00000066878	tspan12 (ENSOMYG00000040497) #23	ing3 (ENSOMYG00000040519) #24	CPED1 (ENSOMYG00000040539) #25	wnt16 (ENSOMYG00000040551) #26	stab2 (ENSOMYG00000040741)	lmf2b (ENSOMYG00000041354)	ovch1 (ENSOMYG00000041382)	TMTC1 (ENSOMYG00000041406)	ENSOMYG00000041417	ipo8 (ENSOMYG00000041523)	caprin2 (ENSOMYG00000042155)	ENSOMYG00000075788	ENSOMYG00000042174	dennd5b (ENSOMYG00000042339)
Salmo	ANCESTRAL SPECIES	25	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.b	ENSGT00390000014448.q.b	ENSGT00940000157983.`b.b	ENSGT00390000014443.f	ENSGT00390000004323.a.c.b	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a ##22	ENSGT00510000047764.c.b #23	ENSGT00940000156619.c #24	ENSGT00390000015216.ab #25	ENSGT00940000157480.a #26	ENSGT00940000156566	ENSGT00530000063702.a.b.f	ENSGT00940000163017.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158027.q	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c	ENSGT00390000006485.c.sc.d	ENSGT00940000153678.a.a.d	ENSGT00940000155662.e.a.d.a	ENSGT00940000158662.l.b
River trout	MODERN SPECIES	38	ucmaa (ENSSTUG00000013237)	phyh (ENSSTUG00000013213)	cdk17 (ENSSTUG00000011668)	ENSSTUG00000011624	ELK3 (ENSSTUG00000011620)	hcfc2 (ENSSTUG00000011609)	hcfc2 (ENSSTUG00000011586)	CEP83 (ENSSTUG00000011502)	ENSSTUG00000011483	cradd (ENSSTUG00000011470)	socs2 (ENSSTUG00000011458)	ncaph2 (ENSSTUG00000011434)	sco2 (ENSSTUG00000011414)	ENSSTUG00000011377	FLNC (ENSSTUG00000010279)	kcnd2 (ENSSTUG00000010222) ##22	tspan12 (ENSSTUG00000010204) #23	ing3 (ENSSTUG00000010176) #24	CPED1 (ENSSTUG00000010156) #25	wnt16 (ENSSTUG00000010146) #26	stab2 (ENSSTUG00000007625)	lmf2b (ENSSTUG00000007454)	ovch1 (ENSSTUG00000007440)	ENSSTUG00000007435	TMTC1 (ENSSTUG00000007098)	ipo8 (ENSSTUG00000006855)	caprin2 (ENSSTUG00000006828)	sinhcaf (ENSSTUG00000006810)	dennd5b (ENSSTUG00000005644)	pnpla3 (ENSSTUG00000005578)	sult4a1 (ENSSTUG00000005543)
Atlantic salmon	MODERN SPECIES	26	optn (ENSSSAG00000121606)	ccdc3a (ENSSSAG00000053999)	mcm10 (ENSSSAG00000053979)	ucmaa (ENSSSAG00000053968)	phyh (ENSSSAG00000053964)	cdk17 (ENSSSAG00000073164)	ENSSSAG00000115537	ENSSSAG00000050756	CEP83 (ENSSSAG00000050654)	ENSSSAG00000098082	socs2 (ENSSSAG00000091709)	sco2 (ENSSSAG00000092263)	ENSSSAG00000050529	ENSSSAG00000050488	ENSSSAG00000046597	kcnd2 (ENSSSAG00000046267) ##22	tspan12 (ENSSSAG00000081986) #23	ing3 (ENSSSAG00000046181) #24	CPED1 (ENSSSAG00000046171) #25	wnt16 (ENSSSAG00000090697) #26	stab2 (ENSSSAG00000045007)	lmf2b (ENSSSAG00000044688)	ovch1 (ENSSSAG00000044656)	ENSSSAG00000102149	TMTC1 (ENSSSAG00000044469)	ipo8 (ENSSSAG00000043974)	caprin2 (ENSSSAG00000043923)	ENSSSAG00000084869	dennd5b (ENSSSAG00000015764)	pnpla3 (ENSSSAG00000077350)	st4a1 (ENSSSAG00000077344)
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e	ENSGT00390000004323.a.c.a	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b ##22	ENSGT00510000047764.d #23	ENSGT00940000156619.d #24	ENSGT00390000015216.`b #25	ENSGT00940000157480.b #26	ENSGT00530000063702.a.b.e	ENSGT00940000163017.a.a	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c	ENSGT00940000153678.a.a.c	ENSGT00390000006760	ENSGT00940000155662.e.a.c	ENSGT00940000158662.k	ENSGT00390000007681.b.a.b.c	ENSGT00940000153185.a.a.a.k.b
Salmo	ANCESTRAL SPECIES	46	ENSGT00390000010760.e.b.a.b	ENSGT00390000007134.f	ENSGT00390000011492.a.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e	ENSGT00390000004323.a.c.a	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b ##22	ENSGT00510000047764.d #23	ENSGT00940000156619.d #24	ENSGT00390000015216.`b #25	ENSGT00940000157480.b #26	ENSGT00530000063702.a.b.e	ENSGT00940000163017.a.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.b.a	ENSGT00940000158027.r	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c	ENSGT00940000153678.a.a.c	ENSGT00940000175378	ENSGT00390000006760	ENSGT00940000155662.e.a.c
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000117100	ENSSSAG00000103330	ucmaa (ENSSSAG00000114126)	ENSSSAG00000085247	cdk17 (ENSSSAG00000102249)	ENSSSAG00000095103	ENSSSAG00000092031	CEP83 (ENSSSAG00000073067)	ENSSSAG00000050582	cradd (ENSSSAG00000084503)	socs2 (ENSSSAG00000073047)	sco2 (ENSSSAG00000096017)	ncaph2 (ENSSSAG00000073043)	ENSSSAG00000073033	ENSSSAG00000066886	kcnd2 (ENSSSAG00000066605) ##22	tspan12 (ENSSSAG00000066598) #23	ing3 (ENSSSAG00000066577) #24	CPED1 (ENSSSAG00000066561) #25	wnt16 (ENSSSAG00000066553) #26	lmf2b (ENSSSAG00000066543)	ovch1 (ENSSSAG00000066534)	ENSSSAG00000066524	TMTC1 (ENSSSAG00000066480)	ipo8 (ENSSSAG00000066083)	caprin2 (ENSSSAG00000066057)	ENSSSAG00000066045	ENSSSAG00000092352	dennd5b (ENSSSAG00000063199)	ttll12 (ENSSSAG00000057504)	pnpla3 (ENSSSAG00000015503)
River trout	MODERN SPECIES	34	ENSSTUG00000022763	mcm10 (ENSSTUG00000022782)	ucmaa (ENSSTUG00000022822)	phyh (ENSSTUG00000022836)	cdk17 (ENSSTUG00000022959)	ELK3 (ENSSTUG00000026180)	hcfc2 (ENSSTUG00000026210)	ENSSTUG00000026249	ENSSTUG00000026789	cradd (ENSSTUG00000026828)	socs2 (ENSSTUG00000026831)	sco2 (ENSSTUG00000026838)	ENSSTUG00000026845	ENSSTUG00000026851	FLNC (ENSSTUG00000027125)	kcnd2 (ENSSTUG00000045731) ##22	tspan12 (ENSSTUG00000045738) #23	ing3 (ENSSTUG00000045757) #24	CPED1 (ENSSTUG00000045783) #25	wnt16 (ENSSTUG00000045801) #26	lmf2b (ENSSTUG00000045814)	ovch1 (ENSSTUG00000045863)	ENSSTUG00000045877	ENSSTUG00000045892	ipo8 (ENSSTUG00000045924)	caprin2 (ENSSTUG00000046012)	sinhcaf (ENSSTUG00000046052)	dennd5b (ENSSTUG00000046103)	ENSSTUG00000046521	ttll12 (ENSSTUG00000046532)	pnpla3 (ENSSTUG00000046699)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00530000063808.b.n	ENSGT00390000011492.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT00940000157983.`b.a	ENSGT00390000014443.e	ENSGT00390000004323.a.c.a	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b ##22	ENSGT00510000047764.d #23	ENSGT00940000156619.d #24	ENSGT00390000015216.`b #25	ENSGT00940000157480.b #26	ENSGT00530000063702.a.b.e	ENSGT00940000163017.a.a	ENSGT00940000158027.t.a	ENSGT00940000158027.s	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c	ENSGT00940000153678.a.a.c	ENSGT00390000006760	ENSGT00940000155662.e.a.c	ENSGT00940000155662.e.a.d.b.a
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000043622	ENSOMYG00000043414	ENSOMYG00000043401	CEP83 (ENSOMYG00000043396)	ENSOMYG00000043388	ENSOMYG00000043392	ENSOMYG00000043373	cradd (ENSOMYG00000043360)	socs2 (ENSOMYG00000043353)	ENSOMYG00000076235	sco2 (ENSOMYG00000043282)	ENSOMYG00000043278	ENSOMYG00000041180	ENSOMYG00000052003	ENSOMYG00000056851	kcnd2 (ENSOMYG00000040841) ##22	tspan12 (ENSOMYG00000040836) #23	ing3 (ENSOMYG00000040829) #24	CPED1 (ENSOMYG00000057823) #25	wnt16 (ENSOMYG00000040820) #26	lmf2b (ENSOMYG00000040799)	ovch1 (ENSOMYG00000040780)	TMTC1 (ENSOMYG00000040744)	ENSOMYG00000067302	ipo8 (ENSOMYG00000040610)	caprin2 (ENSOMYG00000040526)	ENSOMYG00000040515	dennd5b (ENSOMYG00000039000)	ENSOMYG00000051703	ttll12 (ENSOMYG00000037989)	ENSOMYG00000054040
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00390000014429.b.e	ENSGT00530000063808.b.n	ENSGT00390000011492.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd	ENSGT01050000244850.A.a.o.b.d	ENSGT00940000157983.`b.a	ENSGT00390000014443.e	ENSGT00390000004323.a.c.a	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b ##22	ENSGT00510000047764.d #23	ENSGT00940000156619.d #24	ENSGT00390000015216.`b #25	ENSGT00940000157480.b #26	ENSGT00530000063702.a.b.e	ENSGT00940000163017.a.a	ENSGT00940000158027.t.a	ENSGT00940000158027.s	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c	ENSGT00940000153678.a.a.c	ENSGT00390000006760	ENSGT00940000155662.e.a.c	ENSGT00940000155662.e.a.d.b.a
Coho salmon	MODERN SPECIES	10	camk1da (ENSOKIG00005035555)	ccdc3a (ENSOKIG00005037374)	optn (ENSOKIG00005037385)	ENSOKIG00005037424	phyh (ENSOKIG00005037505)	ENSOKIG00005037702	ELK3 (ENSOKIG00005039451)	ENSOKIG00005039495	CEP83 (ENSOKIG00005039533)	ENSOKIG00005039590	ENSOKIG00005039607	ENSOKIG00005039612	socs2 (ENSOKIG00005039643)	SCO2 (ENSOKIG00005039661)	ENSOKIG00005039676	kcnd2 (ENSOKIG00005039683) ##22	ENSOKIG00005039692	tspan12 (ENSOKIG00005039701) #23	ing3 (ENSOKIG00005039722) #24	CPED1 (ENSOKIG00005039761) #25	wnt16 (ENSOKIG00005016207) #26	lmf2b (ENSOKIG00005016222)	ovch1 (ENSOKIG00005016267)	TMTC1 (ENSOKIG00005016296)	ENSOKIG00005016377	ipo8 (ENSOKIG00005016506)	caprin2 (ENSOKIG00005018098)	ENSOKIG00005018133	dennd5b (ENSOKIG00005018204)	ttll12 (ENSOKIG00005018743)	pnpla3 (ENSOKIG00005019475)
Chinook salmon	MODERN SPECIES	8	phyh (ENSOTSG00005010911)	ENSOTSG00005010910	cdk17 (ENSOTSG00005010849)	ELK3 (ENSOTSG00005010845)	hcfc2 (ENSOTSG00005010843)	CEP83 (ENSOTSG00005010842)	ENSOTSG00005010840	socs2 (ENSOTSG00005010839)	ncaph2 (ENSOTSG00005010837)	sco2 (ENSOTSG00005010836)	ENSOTSG00005010834	FLNC (ENSOTSG00005009161)	ELFN2 (ENSOTSG00005009153)	ELFN2 (ENSOTSG00005009152)	ENSOTSG00005009151	kcnd2 (ENSOTSG00005009150) ##22	tspan12 (ENSOTSG00005009148) #23	ing3 (ENSOTSG00005009142) #24	ENSOTSG00005009135 #25	wnt16 (ENSOTSG00005009134) #26	lmf2b (ENSOTSG00005009132)	ovch1 (ENSOTSG00005009130)	ENSOTSG00005009129	TMTC1 (ENSOTSG00005009127)	ipo8 (ENSOTSG00005003373)	caprin2 (ENSOTSG00005003312)	sinhcaf (ENSOTSG00005003307)	dennd5b (ENSOTSG00005002511)	ttll12 (ENSOTSG00005002164)	pnpla3 (ENSOTSG00005002135)	pnpla3 (ENSOTSG00005002132)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2149																kcnd2 (ENSHHUG00000007662) ##22
Huchen	MODERN SPECIES	2219																kcnd2 (ENSHHUG00000035278) ##22
Northern pike	MODERN SPECIES	22																kcnd2 (ENSELUG00000001707) ##22	tspan12 (ENSELUG00000017895) #23	ing3 (ENSELUG00000017956) #24	CPED1 (ENSELUG00000009615) #25	wnt16 (ENSELUG00000009640) #26	ENSELUG00000009665	stab2 (ENSELUG00000010256)	ENSELUG00000027209	lmf2b (ENSELUG00000019944)	ovch1 (ENSELUG00000019962)	ENSELUG00000019909	TMTC1 (ENSELUG00000028880)	ipo8 (ENSELUG00000001212)	caprin2 (ENSELUG00000019776)	sinhcaf (ENSELUG00000019671)	dennd5b (ENSELUG00000019640)
Otomorpha	ANCESTRAL SPECIES	386							ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566
Otophysi	ANCESTRAL SPECIES	59	ENSGT00390000007160.a.b	ENSGT00940000156380	ENSGT00940000157779	ENSGT00390000013550	ENSGT00390000010221.y	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00390000004697	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT00390000004237.i	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b	ENSGT00530000063554.b	ENSGT00940000157529.i.b	ENSGT00390000016228.a.a	ENSGT00730000111061	ENSGT00390000013995.b.b.k.a	ENSGT00940000156242.c.b	ENSGT00950000183062.a.a.b.b.a
Characiphysae	ANCESTRAL SPECIES	15	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263	ENSGT00940000154380.a.a.b	ENSGT00390000011669	ENSGT00940000158078	ENSGT01020000230401.b.a.b.b	ENSGT00530000064216	ENSGT00390000004697	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT01100000263502.A.b.b.f	ENSGT00940000156566	ENSGT00730000111314	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00940000165059.B.b	ENSGT00940000160326.c.b	ENSGT00950000182994.B.a.b	ENSGT00940000153969.a	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000167336
Characiphysae_b	ANCESTRAL SPECIES	47	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263	ENSGT00940000154380.a.a.b	ENSGT00390000011669	ENSGT00940000158078	ENSGT01020000230401.b.a.b.b	ENSGT00530000064216	ENSGT00390000004697	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT01100000263502.A.b.b.f	ENSGT00940000156566	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00940000165059.B.b	ENSGT00940000160326.c.a	ENSGT00940000160326.c.b	ENSGT00950000182994.B.a.b	ENSGT00940000153969.a	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000167336
Electric eel	MODERN SPECIES	311					ENSEEEG00000014634	parp12b (ENSEEEG00000014638)	sbf1 (ENSEEEG00000014713)	adm2a (ENSEEEG00000018047)	fbxo18 (ENSEEEG00000018051)	glt8d2 (ENSEEEG00000018061)	hsp90b1 (ENSEEEG00000018181)	ENSEEEG00000019518	ENSEEEG00000019521	FLNC (ENSEEEG00000019585)	ENSEEEG00000021098	kcnd2 (ENSEEEG00000021099) ##22	tspan12 (ENSEEEG00000021100) #23	ing3 (ENSEEEG00000021101) #24	CPED1 (ENSEEEG00000021103) #25	wnt16 (ENSEEEG00000021107) #26
Channel catfish	MODERN SPECIES	10	tspan9b (ENSIPUG00000019480)	mical3b (ENSIPUG00000019442)	svopl (ENSIPUG00000019395)	ENSIPUG00000019359	parp12b (ENSIPUG00000019340)	sbf1 (ENSIPUG00000019200)	ADM2 (ENSIPUG00000019189)	fbxo18 (ENSIPUG00000019144)	glt8d2 (ENSIPUG00000019094)	hsp90b1 (ENSIPUG00000019031)	naf1 (ENSIPUG00000019009)	ddx46 (ENSIPUG00000018977)	ENSIPUG00000018943	FLNC (ENSIPUG00000018871)	ENSIPUG00000018841	kcnd2 (ENSIPUG00000018815) ##22	tspan12 (ENSIPUG00000018794) #23	ing3 (ENSIPUG00000018763) #24	cped1 (ENSIPUG00000018748) #25	wnt16 (ENSIPUG00000018744) #26	parietopsin (ENSIPUG00000018718)	stab2 (ENSIPUG00000018534)	ENSIPUG00000018506	ENSIPUG00000018433	MKLN1 (ENSIPUG00000018367)	net1 (ENSIPUG00000018277)	Asb13 (ENSIPUG00000018243)	asb13a.1 (ENSIPUG00000018238)	gdi2 (ENSIPUG00000018222)	ankrd16 (ENSIPUG00000018183)	ENSIPUG00000018139
Cyprinoidei	ANCESTRAL SPECIES	28													ENSGT00390000004697	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT00940000156566	ENSGT01050000244951.a.b.a.b.b	ENSGT00940000158899	ENSGT00940000163299.B.a.b.d.b.a	ENSGT00940000163299.B.a.a	ENSGT00530000063745.b	ENSGT00390000006546	ENSGT00940000164603	ENSGT00940000155867.a.b.e	ENSGT00940000161249	ENSGT00940000167336
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	2	ENSGT00940000156016.h	ENSGT00940000154983.c.b.s.b	ENSGT00940000158225.i.a.n	ENSGT00940000155580.b.a.b.i	ENSGT00940000158632.f	ENSGT00530000063472.a.b	ENSGT00940000164581.A.a.b.a	ENSGT01020000230401.b.a.b.a	ENSGT00940000158078.d	ENSGT00390000011669.f	ENSGT00940000154380.a.a.b.f	ENSGT00940000155263.e	ENSGT00390000004697.a	ENSGT00940000159122.h.a	ENSGT00940000153588.a.a.a.a	ENSGT00940000155472.a.b.a.a.e ##22	ENSGT00510000047764.a #23	ENSGT00940000156619.a #24	ENSGT00390000015216.y #25	ENSGT00940000157480.i #26	ENSGT00940000156566.i	ENSGT01050000244951.a.b.a.b.b.b	ENSGT00940000158899.e	ENSGT00940000163299.B.a.b.d.b.a.b.b.a.b.b	ENSGT00440000033504.B.b	ENSGT00940000155867.a.b.e.a	ENSGT00940000161249.g	ENSGT00940000167336.g	ENSGT00620000087961.a.b.a.b.a.b	ENSGT00940000153969.a.d	ENSGT00950000182994.B.a.b.ib
Goldfish	MODERN SPECIES	33	gas8 (ENSCARG00000063890)	trmu (ENSCARG00000064304)	ENSCARG00000064434	GRAMD4 (ENSCARG00000065454)	cerk (ENSCARG00000065621)	tbc1d22a (ENSCARG00000065691)	parp12b (ENSCARG00000066081)	hsp90b1 (ENSCARG00000066093)	glt8d2 (ENSCARG00000066136)	fbxo18 (ENSCARG00000066165)	adm2a (ENSCARG00000066227)	sbf1 (ENSCARG00000066579)	ENSCARG00000069710	ENSCARG00000069715	FLNC (ENSCARG00000069751)	kcnd2 (ENSCARG00000069770) ##22	tspan12 (ENSCARG00000069771) #23	ing3 (ENSCARG00000069774) #24	CPED1 (ENSCARG00000069783) #25	wnt16 (ENSCARG00000069790) #26	ENSCARG00000000377	syt10 (ENSCARG00000000501)	ENSCARG00000000521	ENSCARG00000000540	ENSCARG00000000545	ENSCARG00000000549	ENSCARG00000000564	tmtc2a (ENSCARG00000000574)	mettl25 (ENSCARG00000000597)	ENSCARG00000000616	ENSCARG00000000630
Cyprininae_a	ANCESTRAL SPECIES	136	ENSGT00940000156016.h	ENSGT00940000154983.c.b.s.b	ENSGT00940000158225.i.a.n	ENSGT00940000155580.b.a.b.i	ENSGT00940000158632.f	ENSGT00530000063472.a.b	ENSGT00940000164581.A.a.b.a	ENSGT01020000230401.b.a.b.a	ENSGT00940000158078.d	ENSGT00390000011669.f	ENSGT00940000154380.a.a.b.f	ENSGT00940000155263.e	ENSGT00390000004697.a	ENSGT00940000159122.h.a	ENSGT00940000153588.a.a.a.a	ENSGT00940000155472.a.b.a.a.e ##22	ENSGT00510000047764.a #23	ENSGT00940000156619.a #24	ENSGT00390000015216.y #25	ENSGT00940000157480.i #26	ENSGT00940000156566.i	ENSGT01050000244951.a.b.a.b.b.b	ENSGT00940000158899.e
Common carp reference	MODERN SPECIES	8	dmtf1 (ENSCCRG00000033735)	elapor2b (ENSCCRG00000028254)	tspan9b (ENSCCRG00000028226)	mical3b (ENSCCRG00000028038)	svopl (ENSCCRG00000043226)	ENSCCRG00000005513	parp12b (ENSCCRG00000005507)	glt8d2 (ENSCCRG00000005500)	hsp90b1 (ENSCCRG00000060067)	fbxo18 (ENSCCRG00000005470)	adm2a (ENSCCRG00000057839)	sbf1 (ENSCCRG00000002431)	ENSCCRG00000003580	ENSCCRG00000071096	ENSCCRG00000012887	kcnd2 (ENSCCRG00000059136) ##22	tspan12 (ENSCCRG00000051650) #23	ing3 (ENSCCRG00000063084) #24	CPED1 (ENSCCRG00000006390) #25	wnt16 (ENSCCRG00000000738) #26	stab2 (ENSCCRG00000063674)	ENSCCRG00000000466	ENSCCRG00000067254	syt10 (ENSCCRG00000055550)	ENSCCRG00000073347	ENSCCRG00000064540	ENSCCRG00000000729	ENSCCRG00000070893	ENSCCRG00000066948	ENSCCRG00000066518	ENSCCRG00000053329
Golden-line barbel	MODERN SPECIES	150	meig1 (ENSSGRG00000027831)	tmem243b (ENSSGRG00000027830)	dmtf1 (ENSSGRG00000027828)	elapor2b (ENSSGRG00000027576)	tspan9b (ENSSGRG00000027555)	mical3b (ENSSGRG00000026682)	svopl (ENSSGRG00000026665)	ENSSGRG00000026663	parp12b (ENSSGRG00000026658)	ENSSGRG00000026573	fbxo18 (ENSSGRG00000026570)	adm2a (ENSSGRG00000026569)	sbf1 (ENSSGRG00000021010)	ENSSGRG00000020939	FLNC (ENSSGRG00000007478)	kcnd2 (ENSSGRG00000007080) ##22	tspan12 (ENSSGRG00000007072) #23	ing3 (ENSSGRG00000006992) #24	ENSSGRG00000006991 #25	wnt16 (ENSSGRG00000006989) #26	stab2 (ENSSGRG00000006866)	ENSSGRG00000005832	ENSSGRG00000005800	syt10 (ENSSGRG00000005799)
Cyprininae	ANCESTRAL SPECIES	193	ENSGT00940000154983.c.b.s.a	ENSGT00940000158225.i.a.m	ENSGT00940000155580.b.a.b.j	ENSGT00940000158632.e	ENSGT00530000063472.a.a	ENSGT00940000164581.A.a.b.b	ENSGT00530000064216	ENSGT01020000230401.b.a.b.b	ENSGT00940000158078.c	ENSGT00390000011669.e	ENSGT00940000154380.a.a.b.e	ENSGT00940000155263.f	ENSGT00390000004697.b	ENSGT00940000159122.h.b	ENSGT00940000153588.a.a.a.b	ENSGT00940000155472.a.b.a.a.f ##22	ENSGT00510000047764.b #23	ENSGT00940000156619.b #24	ENSGT00390000015216.z #25	ENSGT00940000157480.j #26	ENSGT00940000156566.j	ENSGT01050000244951.a.b.a.b.b.a	ENSGT00940000158899.f	ENSGT00940000163299.B.a.b.d.b.a.a.b	ENSGT00940000163299.B.a.a.c.b.b.a.a.a.b	ENSGT00940000163299.B.a.b.d.b.a.a.a.b	ENSGT00940000163299.B.a.a.c.b.b.a.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	21	ENSCARG00000068947	cand1 (ENSCARG00000068988)	dyrk2 (ENSCARG00000069242)	ifng1 (ENSCARG00000069254)	ENSCARG00000069262	ifng1r (ENSCARG00000069265)	ENSCARG00000069268	il26 (ENSCARG00000069271)	ENSCARG00000004039	mdm1 (ENSCARG00000004090)	calua (ENSCARG00000004150)	tnpo3 (ENSCARG00000004191)	irf5 (ENSCARG00000004302)	FLNC (ENSCARG00000004345)	ENSCARG00000004362	kcnd2 (ENSCARG00000004372) ##22	tspan12 (ENSCARG00000004389) #23	ing3 (ENSCARG00000004405) #24	ENSCARG00000004426 #25	wnt16 (ENSCARG00000004433) #26	stab2 (ENSCARG00000004653)	ENSCARG00000005800	si:dkeyp-38g8.5 (ENSCARG00000010014)	epyc (ENSCARG00000010020)	kera (ENSCARG00000010040)	lum (ENSCARG00000010047)	dcn (ENSCARG00000010056)	ENSCARG00000010064	ENSCARG00000010069	dennd5b (ENSCARG00000010098)	pkp2 (ENSCARG00000010196)
Goldfish	MODERN SPECIES	21	nup50 (ENSCARG00000024274)	kiaa0930 (ENSCARG00000024010)	large1 (ENSCARG00000022819)	ENSCARG00000022765	ENSCARG00000022759	cerk (ENSCARG00000022737)	tbc1d22a (ENSCARG00000022148)	epyc (ENSCARG00000022104)	si:dkeyp-38g8.5 (ENSCARG00000022089)	ENSCARG00000022084	ENSCARG00000021805	copg2 (ENSCARG00000021697)	ucn3l (ENSCARG00000021678)	ENSCARG00000021675	ENSCARG00000021670	kcnd2 (ENSCARG00000021661) ##22	tspan12 (ENSCARG00000021645) #23	ing3 (ENSCARG00000021616) #24	CPED1 (ENSCARG00000021598) #25	wnt16 (ENSCARG00000021589) #26	stab2 (ENSCARG00000017453)	ENSCARG00000016547	syt10 (ENSCARG00000016475)	ENSCARG00000016460	ENSCARG00000016443	ENSCARG00000016432	ENSCARG00000016423	ENSCARG00000016417	ENSCARG00000016414	ENSCARG00000016397	ENSCARG00000016358
Cyprininae_a	ANCESTRAL SPECIES	563																ENSGT00940000155472.a.b.a.a.f ##22	ENSGT00510000047764.b #23	ENSGT00940000156619.b #24	ENSGT00390000015216.z #25	ENSGT00940000157480.j #26	ENSGT00940000156566.j	ENSGT01050000244951.a.b.a.b.b.a	ENSGT00940000158899.f	ENSGT00940000163299.B.a.b.d.b.a.a.b	ENSGT00940000163299.B.a.a.c.b.b.a.a.a.b	ENSGT00940000163299.B.a.b.d.b.a.a.a.b	ENSGT00940000163299.B.a.a.c.b.b.a.a.b
Common carp reference	MODERN SPECIES	36	dclre1c (ENSCCRG00000063013)	dmtf1 (ENSCCRG00000024159)	elapor2b (ENSCCRG00000050532)	tspan9b (ENSCCRG00000069667)	mical3b (ENSCCRG00000050452)	svopl (ENSCCRG00000027884)	ENSCCRG00000007807	ENSCCRG00000062217	ENSCCRG00000080790	glt8d2 (ENSCCRG00000016999)	fbxo18 (ENSCCRG00000016980)	adm2a (ENSCCRG00000068459)	sbf1 (ENSCCRG00000013147)	ENSCCRG00000075891	ENSCCRG00000017050	kcnd2 (ENSCCRG00000064443) ##22	tspan12 (ENSCCRG00000017574) #23	ing3 (ENSCCRG00000017591) #24	wnt16 (ENSCCRG00000006386) #26	stab2 (ENSCCRG00000073568)	ENSCCRG00000000777	syt10 (ENSCCRG00000020278)	ENSCCRG00000063573	ENSCCRG00000043244	ENSCCRG00000069394	ENSCCRG00000048328	ENSCCRG00000057943	ENSCCRG00000069177	ENSCCRG00000054096	ENSCCRG00000080056	ENSCCRG00000025018
Zebrafish	MODERN SPECIES	19	tspan9b (ENSDARG00000045706)	mical3b (ENSDARG00000094732)	svopl (ENSDARG00000057983)	ENSDARG00000063008	parp12b (ENSDARG00000057974)	ENSDARG00000086650	hsp90b1 (ENSDARG00000003570)	glt8d2 (ENSDARG00000057942)	fbxo18 (ENSDARG00000062983)	adm2a (ENSDARG00000045708)	ENSDARG00000070126	sbf1 (ENSDARG00000062968)	ENSDARG00000057929	ENSDARG00000057921	FLNC (ENSDARG00000018820)	kcnd2 (ENSDARG00000032799) ##22	tspan12 (ENSDARG00000032389) #23	ing3 (ENSDARG00000034326) #24	CPED1 (ENSDARG00000045747) #25	wnt16 (ENSDARG00000094973) #26	stab2 (ENSDARG00000045748)	ENSDARG00000045749	syt10 (ENSDARG00000045750)	ENSDARG00000095981	ENSDARG00000045752	ENSDARG00000092989	tmtc2a (ENSDARG00000045753)	mettl25 (ENSDARG00000045754)	ccdc59 (ENSDARG00000045755)	ENSDARG00000096083	ENSDARG00000096010
Clupeiformes	ANCESTRAL SPECIES	418										ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26
Denticle herring	MODERN SPECIES	6	cryba2a (ENSDCDG00000029939)	cdk5r2a (ENSDCDG00000029938)	ENSDCDG00000029937	CHPF (ENSDCDG00000029935)	ENSDCDG00000029933	asic4b (ENSDCDG00000029886)	ENSDCDG00000029874	gmppab (ENSDCDG00000029858)	ENSDCDG00000029849	cradd (ENSDCDG00000029847)	socs2 (ENSDCDG00000029846)	ncaph2 (ENSDCDG00000029844)	sco2 (ENSDCDG00000029842)	ENSDCDG00000029840	FLNC (ENSDCDG00000020308)	kcnd2 (ENSDCDG00000020160) ##22	tspan12 (ENSDCDG00000020154) #23	ing3 (ENSDCDG00000020148) #24	ENSDCDG00000020145	wnt16 (ENSDCDG00000020142) #26	ENSDCDG00000020136	ENSDCDG00000020130	CEP83 (ENSDCDG00000020117)	arfgap3 (ENSDCDG00000019300)	pacsin2 (ENSDCDG00000019263)	ttll1 (ENSDCDG00000019243)	ENSDCDG00000019237	mcat (ENSDCDG00000019231)	ENSDCDG00000034814	acot15 (ENSDCDG00000034799)	ENSDCDG00000034794
Atlantic herring	MODERN SPECIES	7	trmu (ENSCHAG00000017690)	ENSCHAG00000016028	ENSCHAG00000015985	ENSCHAG00000015982	phyh (ENSCHAG00000015872)	ucmaa (ENSCHAG00000015857)	ENSCHAG00000015843	ENSCHAG00000015823	slc22a4 (ENSCHAG00000015709)	socs2 (ENSCHAG00000015691)	cradd (ENSCHAG00000015689)	ENSCHAG00000015681	sco2 (ENSCHAG00000015669)	ENSCHAG00000015664	FLNC (ENSCHAG00000003874)	kcnd2 (ENSCHAG00000003420) ##22	tspan12 (ENSCHAG00000003366) #23	ing3 (ENSCHAG00000003187) #24	CPED1 (ENSCHAG00000002923) #25	wnt16 (ENSCHAG00000002894) #26	ENSCHAG00000002642	ENSCHAG00000002442	ENSCHAG00000002425	ENSCHAG00000002361	ENSCHAG00000025003	ENSCHAG00000024982	ENSCHAG00000024970	ENSCHAG00000024957	ENSCHAG00000024946	ENSCHAG00000024940	ENSCHAG00000024928
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES	21	ENSGT00900000143702	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00940000174361	ENSGT00940000153110.B.f	ENSGT00940000164757	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158078	ENSGT00940000153969.a	ENSGT00950000182994.B.a.b	ENSGT00940000160326.c.b	ENSGT00940000165059.B.b	ENSGT00940000160592	ENSGT00940000160326.c.a	ENSGT00940000155849.h	ENSGT00390000001702	ENSGT00730000111314	ENSGT00390000011492.b	ENSGT00940000155834.i.b
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161	ENSGT00580000081623
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	4	NET1 (ENSTNIG00000016006)	ASB13 (ENSTNIG00000016007)	taf3 (ENSTNIG00000016008)	ENSTNIG00000016009	dhtkd1 (ENSTNIG00000016010)	CAMK1D (ENSTNIG00000016011)	CDK17 (ENSTNIG00000016012)	elk3 (ENSTNIG00000016013)	hal (ENSTNIG00000016014)	NTN4 (ENSTNIG00000016015)	ENSTNIG00000016016	ENSTNIG00000016017	nr2c1 (ENSTNIG00000016018)	tmcc3 (ENSTNIG00000016019)	FLNC (ENSTNIG00000016020)	ENSTNIG00000016021 ##22	ENSTNIG00000016022 ##22	parietopsin (ENSTNIG00000016023)	NT5DC3 (ENSTNIG00000016024)	hsp90b1 (ENSTNIG00000016025)	PRKAR2B (ENSTNIG00000016026)	hbp1 (ENSTNIG00000016027)	GPR22 (ENSTNIG00000016028)	BCAP29 (ENSTNIG00000016029)	SLCO1C1 (ENSTNIG00000016030)	PDE3A (ENSTNIG00000016031)	AEBP2 (ENSTNIG00000016032)	PLEKHA5 (ENSTNIG00000016033)	PLCZ1 (ENSTNIG00000016034)	ENSTNIG00000016035	RELN (ENSTNIG00000016036)
Tetraodon	MODERN SPECIES	4	ASB13 (ENSTNIG00000016007)	taf3 (ENSTNIG00000016008)	ENSTNIG00000016009	dhtkd1 (ENSTNIG00000016010)	CAMK1D (ENSTNIG00000016011)	CDK17 (ENSTNIG00000016012)	elk3 (ENSTNIG00000016013)	hal (ENSTNIG00000016014)	NTN4 (ENSTNIG00000016015)	ENSTNIG00000016016	ENSTNIG00000016017	nr2c1 (ENSTNIG00000016018)	tmcc3 (ENSTNIG00000016019)	FLNC (ENSTNIG00000016020)	ENSTNIG00000016021 ##22	ENSTNIG00000016022 ##22	parietopsin (ENSTNIG00000016023)	NT5DC3 (ENSTNIG00000016024)	hsp90b1 (ENSTNIG00000016025)	PRKAR2B (ENSTNIG00000016026)	hbp1 (ENSTNIG00000016027)	GPR22 (ENSTNIG00000016028)	BCAP29 (ENSTNIG00000016029)	SLCO1C1 (ENSTNIG00000016030)	PDE3A (ENSTNIG00000016031)	AEBP2 (ENSTNIG00000016032)	PLEKHA5 (ENSTNIG00000016033)	PLCZ1 (ENSTNIG00000016034)	ENSTNIG00000016035	RELN (ENSTNIG00000016036)	LHFPL3 (ENSTNIG00000000302)
Fugu	MODERN SPECIES	21	taf3 (ENSTRUG00000016902)	CELF2 (ENSTRUG00000016905)	dhtkd1 (ENSTRUG00000016922)	ENSTRUG00000016926	CDK17 (ENSTRUG00000016933)	elk3 (ENSTRUG00000016937)	hal (ENSTRUG00000016943)	ENSTRUG00000016951	ENSTRUG00000016953	ENSTRUG00000029085	FGD6 (ENSTRUG00000016956)	nr2c1 (ENSTRUG00000016957)	tmcc3 (ENSTRUG00000016961)	ENSTRUG00000016962	FLNC (ENSTRUG00000016964)	ENSTRUG00000016975 ##22	parietopsin (ENSTRUG00000016978)	NT5DC3 (ENSTRUG00000016979)	hsp90b1 (ENSTRUG00000016985)	PRKAR2B (ENSTRUG00000016988)	hbp1 (ENSTRUG00000016990)	GPR22 (ENSTRUG00000019790)	ENSTRUG00000016997	SLCO1C1 (ENSTRUG00000016998)	PDE3A (ENSTRUG00000017008)	AEBP2 (ENSTRUG00000017011)	PLEKHA5 (ENSTRUG00000017012)	PLCZ1 (ENSTRUG00000017022)	ENSTRUG00000031845	ENSTRUG00000024283	ENSTRUG00000020406
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Ballan wrasse	MODERN SPECIES	15	taf3 (ENSLBEG00000010517)	CELF2 (ENSLBEG00000010618)	dhtkd1 (ENSLBEG00000010875)	camk1db (ENSLBEG00000010981)	ucmab (ENSLBEG00000011025)	CDK17 (ENSLBEG00000011044)	elk3 (ENSLBEG00000011118)	hal (ENSLBEG00000011172)	NTN4 (ENSLBEG00000011274)	ENSLBEG00000011303	FGD6 (ENSLBEG00000011378)	nr2c1 (ENSLBEG00000011498)	tmcc3 (ENSLBEG00000011530)	ENSLBEG00000011564	FLNC (ENSLBEG00000011618)	ENSLBEG00000011748 ##22	parietopsin (ENSLBEG00000011812)	NT5DC3 (ENSLBEG00000011838)	hsp90b1 (ENSLBEG00000011920)	PRKAR2B (ENSLBEG00000012008)	hbp1 (ENSLBEG00000012078)	ENSLBEG00000012127	GPR22 (ENSLBEG00000012138)	ENSLBEG00000012147	SLCO1C1 (ENSLBEG00000012162)	PDE3A (ENSLBEG00000012223)	AEBP2 (ENSLBEG00000012298)	PLEKHA5 (ENSLBEG00000012448)	PLCZ1 (ENSLBEG00000012696)	PIK3C2G (ENSLBEG00000012724)	ENSLBEG00000012771
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Lumpfish	MODERN SPECIES	21	taf3 (ENSCLMG00005004915)	CELF2 (ENSCLMG00005004921)	dhtkd1 (ENSCLMG00005004932)	camk1db (ENSCLMG00005005775)	ucmab (ENSCLMG00005005918)	CDK17 (ENSCLMG00005005951)	elk3 (ENSCLMG00005009418)	hal (ENSCLMG00005009420)	NTN4 (ENSCLMG00005009421)	ENSCLMG00005009422	FGD6 (ENSCLMG00005009425)	nr2c1 (ENSCLMG00005009426)	TMCC3 (ENSCLMG00005009536)	ENSCLMG00005009538	ENSCLMG00005009541	ENSCLMG00005009544 ##22	parietopsin (ENSCLMG00005009546)	NT5DC3 (ENSCLMG00005009556)	hsp90b1 (ENSCLMG00005010555)	PRKAR2B (ENSCLMG00005010563)	hbp1 (ENSCLMG00005010568)	GPR22 (ENSCLMG00005010677)	ENSCLMG00005010681	SLCO1C1 (ENSCLMG00005010716)	PDE3A (ENSCLMG00005010817)	AEBP2 (ENSCLMG00005010819)	PLEKHA5 (ENSCLMG00005010823)	PLCZ1 (ENSCLMG00005010838)	ENSCLMG00005010839	ENSCLMG00005010841	ENSCLMG00005010842
Stickleback	MODERN SPECIES	14	trpm1b (ENSGACG00000010422)	ENSGACG00000010417	DNAJA4 (ENSGACG00000010346)	IDH3A (ENSGACG00000010244)	lrrc61 (ENSGACG00000010239)	cib2 (ENSGACG00000010230)	TBC1D2B (ENSGACG00000010224)	ENSGACG00000010201	fbxl22 (ENSGACG00000010198)	ENSGACG00000010197	FGD6 (ENSGACG00000010186)	nr2c1 (ENSGACG00000010174)	tmcc3 (ENSGACG00000010168)	ENSGACG00000010163	FLNC (ENSGACG00000010114)	ENSGACG00000010094 ##22	parietopsin (ENSGACG00000010091)	NT5DC3 (ENSGACG00000010077)	hsp90b1 (ENSGACG00000010067)	PRKAR2B (ENSGACG00000010060)	hbp1 (ENSGACG00000010054)	ENSGACG00000010052	GPR22 (ENSGACG00000010047)	ENSGACG00000010042	PDE3A (ENSGACG00000010032)	AEBP2 (ENSGACG00000010024)	PLEKHA5 (ENSGACG00000010014)	PLCZ1 (ENSGACG00000010007)	ENSGACG00000010003	RELN (ENSGACG00000009959)	LHFPL3 (ENSGACG00000009934)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Channel bull blenny	MODERN SPECIES	20	taf3 (ENSCGOG00000014225)	CELF2 (ENSCGOG00000014217)	dhtkd1 (ENSCGOG00000013982)	camk1db (ENSCGOG00000012275)	ucmab (ENSCGOG00000012236)	CDK17 (ENSCGOG00000009431)	elk3 (ENSCGOG00000009292)	hal (ENSCGOG00000009285)	NTN4 (ENSCGOG00000009282)	ENSCGOG00000008971	FGD6 (ENSCGOG00000008784)	nr2c1 (ENSCGOG00000008597)	tmcc3 (ENSCGOG00000008588)	ENSCGOG00000008574	FLNC (ENSCGOG00000004953)	ENSCGOG00000004866 ##22	parietopsin (ENSCGOG00000004828)	NT5DC3 (ENSCGOG00000003723)	hsp90b1 (ENSCGOG00000023930)	PRKAR2B (ENSCGOG00000023884)	hbp1 (ENSCGOG00000023876)	GPR22 (ENSCGOG00000023875)	ENSCGOG00000023873	SLCO1C1 (ENSCGOG00000023859)	PDE3A (ENSCGOG00000023853)	AEBP2 (ENSCGOG00000023845)	PLEKHA5 (ENSCGOG00000023562)	PLCZ1 (ENSCGOG00000023525)	ENSCGOG00000023523	ENSCGOG00000023520	ENSCGOG00000023519
Pike perch	MODERN SPECIES	6	dhtkd1 (ENSSLUG00000016767)	camk1db (ENSSLUG00000014408)	ENSSLUG00000014294	ucmab (ENSSLUG00000014289)	CDK17 (ENSSLUG00000012632)	elk3 (ENSSLUG00000012565)	hal (ENSSLUG00000012245)	NTN4 (ENSSLUG00000012220)	ENSSLUG00000012149	ENSSLUG00000012131	FGD6 (ENSSLUG00000012125)	nr2c1 (ENSSLUG00000011426)	tmcc3 (ENSSLUG00000011383)	ENSSLUG00000011379	FLNC (ENSSLUG00000009012)	ENSSLUG00000008899 ##22	parietopsin (ENSSLUG00000008895)	NT5DC3 (ENSSLUG00000007781)	hsp90b1 (ENSSLUG00000006901)	PRKAR2B (ENSSLUG00000006548)	hbp1 (ENSSLUG00000006164)	GPR22 (ENSSLUG00000006141)	ENSSLUG00000006134	SLCO1C1 (ENSSLUG00000006044)	PDE3A (ENSSLUG00000006003)	AEBP2 (ENSSLUG00000005982)	PLEKHA5 (ENSSLUG00000004878)	PLCZ1 (ENSSLUG00000004801)	ENSSLUG00000004789	ENSSLUG00000004786	ENSSLUG00000004782
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Large yellow croaker	MODERN SPECIES	492	CELF2 (ENSLCRG00005013013)	dhtkd1 (ENSLCRG00005014070)	camk1db (ENSLCRG00005014955)	ucmab (ENSLCRG00005016031)	CDK17 (ENSLCRG00005016060)	elk3 (ENSLCRG00005017457)	hal (ENSLCRG00005017471)	NTN4 (ENSLCRG00005018974)	ENSLCRG00005018978	ENSLCRG00005019046	FGD6 (ENSLCRG00005019056)	nr2c1 (ENSLCRG00005019069)	tmcc3 (ENSLCRG00005019107)	ENSLCRG00005019110	FLNC (ENSLCRG00005019128)	ENSLCRG00005019349 ##22	parietopsin (ENSLCRG00005019350)	NT5DC3 (ENSLCRG00005019354)	hsp90b1 (ENSLCRG00005019706)	PRKAR2B (ENSLCRG00005019723)	hbp1 (ENSLCRG00005019737)	GPR22 (ENSLCRG00005019743)	ENSLCRG00005019745	SLCO1C1 (ENSLCRG00005019746)	PDE3A (ENSLCRG00005019754)	AEBP2 (ENSLCRG00005019758)	PLEKHA5 (ENSLCRG00005019780)	PLCZ1 (ENSLCRG00005019819)	ENSLCRG00005019826	ENSLCRG00005019828	RELN (ENSLCRG00005019832)
European seabass	MODERN SPECIES	19	ENSDLAG00005024663	ENSDLAG00005024582	dhtkd1 (ENSDLAG00005024548)	camk1db (ENSDLAG00005024213)	ucmab (ENSDLAG00005024188)	ENSDLAG00005023500	hal (ENSDLAG00005023289)	ELK3 (ENSDLAG00005033254)	ENSDLAG00005023281	ENSDLAG00005023245	FGD6 (ENSDLAG00005023189)	NR2C1 (ENSDLAG00005023092)	TMCC3 (ENSDLAG00005031421)	ENSDLAG00005023071	ENSDLAG00005020828	ENSDLAG00005020761 ##22	ENSDLAG00005020758	ENSDLAG00005020725	ENSDLAG00005019816	PRKAR2B (ENSDLAG00005019785)	ENSDLAG00005019780	GPR22 (ENSDLAG00005027759)	ENSDLAG00005019764	SLCO1C1 (ENSDLAG00005019596)	PDE3A (ENSDLAG00005019494)	AEBP2 (ENSDLAG00005019472)	PLEKHA5 (ENSDLAG00005018292)	PLCZ1 (ENSDLAG00005018139)	PIK3C2G (ENSDLAG00005018077)	ENSDLAG00005033794	ENSDLAG00005017571
Gilthead seabream	MODERN SPECIES	22	camk1db (ENSSAUG00010005958)	ucmab (ENSSAUG00010005929)	CDK17 (ENSSAUG00010004339)	elk3 (ENSSAUG00010004266)	hal (ENSSAUG00010004129)	NTN4 (ENSSAUG00010023323)	ENSSAUG00010023229	ENSSAUG00010023226	FGD6 (ENSSAUG00010023143)	nr2c1 (ENSSAUG00010023068)	tmcc3 (ENSSAUG00010023062)	ENSSAUG00010023061	ENSSAUG00010023056	FLNC (ENSSAUG00010021900)	ENSSAUG00010021827	ENSSAUG00010021824 ##22	parietopsin (ENSSAUG00010021821)	NT5DC3 (ENSSAUG00010021219)	hsp90b1 (ENSSAUG00010019513)	PRKAR2B (ENSSAUG00010021151)	hbp1 (ENSSAUG00010019470)	GPR22 (ENSSAUG00010019468)	ENSSAUG00010019467	SLCO1C1 (ENSSAUG00010019262)	PDE3A (ENSSAUG00010019255)	AEBP2 (ENSSAUG00010019252)	PLEKHA5 (ENSSAUG00010019177)	PLCZ1 (ENSSAUG00010019153)	ENSSAUG00010019149	ENSSAUG00010019147	ENSSAUG00010019146
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Turbot	MODERN SPECIES	1	ENSSMAG00000008976	ENSSMAG00000008985	dhtkd1 (ENSSMAG00000009022)	camk1db (ENSSMAG00000009106)	ucmab (ENSSMAG00000009152)	CDK17 (ENSSMAG00000009167)	ELK3 (ENSSMAG00000009145)	hal (ENSSMAG00000009206)	ENSSMAG00000009282	ENSSMAG00000009301	FGD6 (ENSSMAG00000009329)	NR2C1 (ENSSMAG00000009370)	TMCC3 (ENSSMAG00000009419)	ENSSMAG00000029429	ENSSMAG00000009476	ENSSMAG00000009730 ##22	ENSSMAG00000009754	ENSSMAG00000009771	ENSSMAG00000009810	PRKAR2B (ENSSMAG00000009847)	ENSSMAG00000009892	GPR22 (ENSSMAG00000009916)	ENSSMAG00000009927	ENSSMAG00000009941	SLCO1C1 (ENSSMAG00000009959)	PDE3A (ENSSMAG00000009999)	AEBP2 (ENSSMAG00000010039)	PLEKHA5 (ENSSMAG00000010079)	PLCZ1 (ENSSMAG00000010232)	ENSSMAG00000010238	ENSSMAG00000029069
Tongue sole	MODERN SPECIES	16	fbln1 (ENSCSEG00000009137)	ENSCSEG00000009109	AKR1D1 (ENSCSEG00000009021)	SLC6A13 (ENSCSEG00000008979)	MON2 (ENSCSEG00000008770)	ppm1h (ENSCSEG00000008731)	ch25hl1.2 (ENSCSEG00000008727)	tspan3a (ENSCSEG00000008705)	pstpip1a (ENSCSEG00000008683)	rcn2 (ENSCSEG00000008671)	scaper (ENSCSEG00000008433)	isl2a (ENSCSEG00000008377)	etfa (ENSCSEG00000008361)	ENSCSEG00000008351	FLNC (ENSCSEG00000008325)	ENSCSEG00000008314 ##22	parietopsin (ENSCSEG00000008310)	NT5DC3 (ENSCSEG00000008287)	hsp90b1 (ENSCSEG00000008269)	avpr1ab (ENSCSEG00000008267)	ENSCSEG00000008260	ENSCSEG00000008065	ENSCSEG00000008029	ENSCSEG00000008016	RAB3IL1 (ENSCSEG00000007993)	BEST1 (ENSCSEG00000007974)	FTH1 (ENSCSEG00000007931)	ENSCSEG00000007882	pgghg (ENSCSEG00000007865)	ENSCSEG00000007858	PNPLA2 (ENSCSEG00000007838)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Barramundi perch	MODERN SPECIES	144	ENSLCAG00010021152	dhtkd1 (ENSLCAG00010021122)	camk1db (ENSLCAG00010021106)	ucmab (ENSLCAG00010021100)	ENSLCAG00010021079	hal (ENSLCAG00010021059)	elk3 (ENSLCAG00010021044)	NTN4 (ENSLCAG00010020988)	ENSLCAG00010020935	ENSLCAG00010020927	FGD6 (ENSLCAG00010020917)	nr2c1 (ENSLCAG00010020899)	tmcc3 (ENSLCAG00010020893)	ENSLCAG00010020890	FLNC (ENSLCAG00010020869)	ENSLCAG00010020863 ##22	parietopsin (ENSLCAG00010020859)	NT5DC3 (ENSLCAG00010020652)	hsp90b1 (ENSLCAG00010020437)	PRKAR2B (ENSLCAG00010020400)	hbp1 (ENSLCAG00010020388)	GPR22 (ENSLCAG00010020383)	ENSLCAG00010020382	SLCO1C1 (ENSLCAG00010020378)
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT00940000157742.a.r.b	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161
Yellowtail amberjack	MODERN SPECIES	3156	taf3 (ENSSLDG00000010968)	ENSSLDG00000010918	dhtkd1 (ENSSLDG00000010823)	camk1db (ENSSLDG00000010767)	ucmab (ENSSLDG00000010754)	CDK17 (ENSSLDG00000010679)	elk3 (ENSSLDG00000010634)	hal (ENSSLDG00000010547)	NTN4 (ENSSLDG00000010492)	ENSSLDG00000010462	FGD6 (ENSSLDG00000010386)	nr2c1 (ENSSLDG00000010306)	tmcc3 (ENSSLDG00000010263)	ENSSLDG00000010225	FLNC (ENSSLDG00000009996)	ENSSLDG00000009905 ##22	parietopsin (ENSSLDG00000009880)	NT5DC3 (ENSSLDG00000009813)	hsp90b1 (ENSSLDG00000009737)	PRKAR2B (ENSSLDG00000009697)	hbp1 (ENSSLDG00000009669)
Greater amberjack	MODERN SPECIES	86	taf3 (ENSSDUG00000022538)	CELF2 (ENSSDUG00000022515)	dhtkd1 (ENSSDUG00000022487)	camk1db (ENSSDUG00000022465)	ucmab (ENSSDUG00000022458)	CDK17 (ENSSDUG00000022449)	elk3 (ENSSDUG00000022442)	hal (ENSSDUG00000022431)	NTN4 (ENSSDUG00000022425)	ENSSDUG00000022414	ENSSDUG00000022404	FGD6 (ENSSDUG00000022384)	nr2c1 (ENSSDUG00000022371)	tmcc3 (ENSSDUG00000022359)	FLNC (ENSSDUG00000022330)	ENSSDUG00000022317 ##22	parietopsin (ENSSDUG00000022310)	NT5DC3 (ENSSDUG00000022304)	hsp90b1 (ENSSDUG00000022291)	PRKAR2B (ENSSDUG00000022282)	hbp1 (ENSSDUG00000022273)	ENSSDUG00000022271	GPR22 (ENSSDUG00000022270)	ENSSDUG00000022247	SLCO1C1 (ENSSDUG00000022234)	AEBP2 (ENSSDUG00000022226)	PLEKHA5 (ENSSDUG00000022152)	PLCZ1 (ENSSDUG00000022135)	PIK3C2G (ENSSDUG00000022087)	ENSSDUG00000022085	ENSSDUG00000022082
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000023207	ENSMAMG00000023208	dhtkd1 (ENSMAMG00000023209)	camk1db (ENSMAMG00000023210)	ucmab (ENSMAMG00000023211)	CDK17 (ENSMAMG00000023212)	ELK3 (ENSMAMG00000023213)	hal (ENSMAMG00000023214)	ENSMAMG00000023215	ENSMAMG00000023216	FGD6 (ENSMAMG00000025780)	NR2C1 (ENSMAMG00000023217)	TMCC3 (ENSMAMG00000023218)	ENSMAMG00000023219	ENSMAMG00000023220	ENSMAMG00000023221 ##22	ENSMAMG00000023223	ENSMAMG00000023224	ENSMAMG00000023225	PRKAR2B (ENSMAMG00000023226)	ENSMAMG00000023227	GPR22 (ENSMAMG00000023228)	ENSMAMG00000023229	SLCO1C1 (ENSMAMG00000023230)	PDE3A (ENSMAMG00000023231)	AEBP2 (ENSMAMG00000023232)	PLEKHA5 (ENSMAMG00000023233)	PLCZ1 (ENSMAMG00000023234)	ENSMAMG00000023235	ENSMAMG00000023236	ENSMAMG00000026454
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000176894	ENSGT00940000177161	ENSGT00580000081623
Climbing perch	MODERN SPECIES	19	ENSATEG00000017169	dhtkd1 (ENSATEG00000017124)	camk1db (ENSATEG00000017083)	ucmab (ENSATEG00000026337)	CDK17 (ENSATEG00000017005)	ELK3 (ENSATEG00000016983)	hal (ENSATEG00000016916)	ENSATEG00000016863	ENSATEG00000016815	ENSATEG00000029319	FGD6 (ENSATEG00000016801)	NR2C1 (ENSATEG00000016756)	TMCC3 (ENSATEG00000016745)	ENSATEG00000016736	ENSATEG00000016620	ENSATEG00000016594 ##22	ENSATEG00000016565	ENSATEG00000016500	ENSATEG00000016467	PRKAR2B (ENSATEG00000025464)	ENSATEG00000016411	GPR22 (ENSATEG00000016391)	ENSATEG00000016372	SLCO1C1 (ENSATEG00000016275)	PDE3A (ENSATEG00000016190)	AEBP2 (ENSATEG00000016137)	PLEKHA5 (ENSATEG00000016051)	PLCZ1 (ENSATEG00000016021)	ENSATEG00000015941	ENSATEG00000029013	ENSATEG00000015839
Siamese fighting fish	MODERN SPECIES	17	taf3 (ENSBSLG00000020218)	ENSBSLG00000019755	dhtkd1 (ENSBSLG00000019355)	camk1db (ENSBSLG00000019196)	ucmab (ENSBSLG00000019179)	CDK17 (ENSBSLG00000018827)	elk3 (ENSBSLG00000018591)	hal (ENSBSLG00000017437)	NTN4 (ENSBSLG00000017361)	ENSBSLG00000017303	FGD6 (ENSBSLG00000017232)	nr2c1 (ENSBSLG00000016765)	tmcc3 (ENSBSLG00000016641)	ENSBSLG00000015981	FLNC (ENSBSLG00000013552)	ENSBSLG00000013050 ##22	ENSBSLG00000012819	parietopsin (ENSBSLG00000012804)	NT5DC3 (ENSBSLG00000012397)	hsp90b1 (ENSBSLG00000009587)	PRKAR2B (ENSBSLG00000009069)	hbp1 (ENSBSLG00000008925)	GPR22 (ENSBSLG00000008605)	ENSBSLG00000008583	SLCO1C1 (ENSBSLG00000008475)	PDE3A (ENSBSLG00000008396)	AEBP2 (ENSBSLG00000008287)	PLEKHA5 (ENSBSLG00000021288)	PLCZ1 (ENSBSLG00000020990)	ENSBSLG00000020349	RELN (ENSBSLG00000019055)
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161
Oryzias	ANCESTRAL SPECIES	16	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT00390000009609	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
Oryzias_b	ANCESTRAL SPECIES		ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00390000009609	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161
Indian medaka	MODERN SPECIES	15	taf3 (ENSOMEG00000011560)	CELF2 (ENSOMEG00000000277)	dhtkd1 (ENSOMEG00000011851)	camk1db (ENSOMEG00000011942)	ucmab (ENSOMEG00000011956)	CDK17 (ENSOMEG00000012073)	elk3 (ENSOMEG00000000296)	hal (ENSOMEG00000012162)	ENSOMEG00000012191	ENSOMEG00000012223	FGD6 (ENSOMEG00000012279)	nr2c1 (ENSOMEG00000012344)	tmcc3 (ENSOMEG00000012371)	ENSOMEG00000012413	FLNC (ENSOMEG00000012486)	ENSOMEG00000012553 ##22	ENSOMEG00000001004	NT5DC3 (ENSOMEG00000000323)	hsp90b1 (ENSOMEG00000012784)	hbp1 (ENSOMEG00000012837)	GPR22 (ENSOMEG00000012859)	ENSOMEG00000012876	SLCO1C1 (ENSOMEG00000012946)	PDE3A (ENSOMEG00000012987)	AEBP2 (ENSOMEG00000013074)	PLEKHA5 (ENSOMEG00000013136)	PLCZ1 (ENSOMEG00000013168)	ENSOMEG00000013197	ENSOMEG00000013210	ENSOMEG00000013220	RELN (ENSOMEG00000013369)
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000000543	taf3 (ENSOJAG00000000551)	CELF2 (ENSOJAG00000000606)	dhtkd1 (ENSOJAG00000000701)	camk1db (ENSOJAG00000000859)	ucmab (ENSOJAG00000001108)	CDK17 (ENSOJAG00000001260)	elk3 (ENSOJAG00000001712)	hal (ENSOJAG00000001751)	NTN4 (ENSOJAG00000001787)	METAP2 (ENSOJAG00000001805)	FGD6 (ENSOJAG00000001856)	nr2c1 (ENSOJAG00000001906)	tmcc3 (ENSOJAG00000002050)	ENSOJAG00000002076	ENSOJAG00000002396 ##22	NT5DC3 (ENSOJAG00000002638)	hsp90b1 (ENSOJAG00000003367)	PRKAR2B (ENSOJAG00000004869)	hbp1 (ENSOJAG00000004936)	GPR22 (ENSOJAG00000005047)	ENSOJAG00000005073	SLCO1C1 (ENSOJAG00000005089)	PDE3A (ENSOJAG00000005103)	ENSOJAG00000005154	AEBP2 (ENSOJAG00000005175)	PLEKHA5 (ENSOJAG00000005210)	PLCZ1 (ENSOJAG00000005319)	ENSOJAG00000005377	ENSOJAG00000005382	LHFPL3 (ENSOJAG00000005658)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000179681	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161	ENSGT00940000176894
Japanese Medaka HdrR	MODERN SPECIES	20	taf3 (ENSORLG00000003878)	ENSORLG00000003894	dhtkd1 (ENSORLG00000003925)	camk1db (ENSORLG00000003942)	ucmab (ENSORLG00000003954)	CDK17 (ENSORLG00000004015)	elk3 (ENSORLG00000004030)	hal (ENSORLG00000004075)	ENSORLG00000004087	ENSORLG00000027162	FGD6 (ENSORLG00000004093)	nr2c1 (ENSORLG00000004114)	TMCC3 (ENSORLG00000004122)	ENSORLG00000004131	flnc (ENSORLG00000004247)	ENSORLG00000004270 ##22	ENSORLG00000029958	NT5DC3 (ENSORLG00000004304)	hsp90b1 (ENSORLG00000004360)	PRKAR2B (ENSORLG00000004379)	ENSORLG00000024832	hbp1 (ENSORLG00000004396)	GPR22 (ENSORLG00000004399)	ENSORLG00000004415	SLCO1C1 (ENSORLG00000004477)	PDE3A (ENSORLG00000004498)	AEBP2 (ENSORLG00000004512)	PLEKHA5 (ENSORLG00000004545)	PLCZ1 (ENSORLG00000004573)	PIK3C2G (ENSORLG00000029595)	ENSORLG00000022363
Chinese medaka	MODERN SPECIES	766	taf3 (ENSOSIG00000014441)	ENSOSIG00000014185	dhtkd1 (ENSOSIG00000014180)	camk1db (ENSOSIG00000013772)	ucmab (ENSOSIG00000013757)	CDK17 (ENSOSIG00000011158)	elk3 (ENSOSIG00000011142)	hal (ENSOSIG00000011141)	ENSOSIG00000011138	ENSOSIG00000011136	FGD6 (ENSOSIG00000011131)	nr2c1 (ENSOSIG00000011085)	tmcc3 (ENSOSIG00000011081)	ENSOSIG00000011080	FLNC (ENSOSIG00000010344)	ENSOSIG00000010331 ##22	ENSOSIG00000010329	NT5DC3 (ENSOSIG00000009751)	PRKAR2B (ENSOSIG00000009266)	hsp90b1 (ENSOSIG00000009242)	GPR22 (ENSOSIG00000009240)	ENSOSIG00000009239	SLCO1C1 (ENSOSIG00000009209)	PDE3A (ENSOSIG00000009202)	AEBP2 (ENSOSIG00000009199)	PLEKHA5 (ENSOSIG00000009194)	PLCZ1 (ENSOSIG00000009189)	PIK3C2G (ENSOSIG00000009178)	ENSOSIG00000009177	RELN (ENSOSIG00000009145)	LHFPL3 (ENSOSIG00000009129)
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00530000063735.b	ENSGT00710000106806	ENSGT00940000155461.E.o	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01030000234518.A.b	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00580000081623
Mangrove rivulus	MODERN SPECIES	6	taf3 (ENSKMAG00000004067)	ENSKMAG00000004057	ENSKMAG00000004040	dhtkd1 (ENSKMAG00000003952)	camk1db (ENSKMAG00000003892)	ucmab (ENSKMAG00000003879)	CDK17 (ENSKMAG00000003859)	elk3 (ENSKMAG00000003838)	hal (ENSKMAG00000003746)	ENSKMAG00000003722	FGD6 (ENSKMAG00000003695)	nr2c1 (ENSKMAG00000003628)	tmcc3 (ENSKMAG00000003605)	ENSKMAG00000003567	FLNC (ENSKMAG00000003417)	ENSKMAG00000003369 ##22	ENSKMAG00000003338	NT5DC3 (ENSKMAG00000003271)	hsp90b1 (ENSKMAG00000003191)	PRKAR2B (ENSKMAG00000003157)	hbp1 (ENSKMAG00000003132)	ENSKMAG00000003123	ENSKMAG00000003114	SLCO1C1 (ENSKMAG00000002762)	PDE3A (ENSKMAG00000002643)	ENSKMAG00000002601	AEBP2 (ENSKMAG00000002578)	PLEKHA5 (ENSKMAG00000002290)	PLCZ1 (ENSKMAG00000002175)	PIK3C2G (ENSKMAG00000002077)	ENSKMAG00000002043
Turquoise killifish	MODERN SPECIES	1622	NUAK1 (ENSNFUG00015024810)	DBX2 (ENSNFUG00015024814)	szl (ENSNFUG00015024815)	ENSNFUG00015024821	ENSNFUG00015024836	APPL2 (ENSNFUG00015024841)	TUBGCP6 (ENSNFUG00015024926)	PLXNB2B (ENSNFUG00015025007)	caprin1b (ENSNFUG00015025177)	LMO2 (ENSNFUG00015014010)	hal (ENSNFUG00015014085)	TMCC3 (ENSNFUG00015015398)	nr2c1 (ENSNFUG00015015453)	ENSNFUG00015016236	FLNC (ENSNFUG00015016322)	ENSNFUG00015017637 ##22	ENSNFUG00015017645	NT5DC3 (ENSNFUG00015017657)	HSP90B1 (ENSNFUG00015017752)	PRKAR2B (ENSNFUG00015017861)	HBP1 (ENSNFUG00015017914)	ENSNFUG00015017924	GPR22 (ENSNFUG00015017927)	ENSNFUG00015017934	SLCO1C1 (ENSNFUG00015017943)	PDE3A (ENSNFUG00015018176)	AEBP2 (ENSNFUG00015018182)	PLEKHA5 (ENSNFUG00015018210)	PIK3C2G (ENSNFUG00015018316)	ENSNFUG00015018323	ENSNFUG00015018324
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894
NAME_4	ANCESTRAL SPECIES	26	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000176894	ENSGT00940000177161	ENSGT00580000081623
Mummichog	MODERN SPECIES	2447	ENSFHEG00000007086	taf3 (ENSFHEG00000007097)	CELF2 (ENSFHEG00000007136)	dhtkd1 (ENSFHEG00000007200)	camk1db (ENSFHEG00000007245)	ucmab (ENSFHEG00000007248)	CDK17 (ENSFHEG00000007275)	elk3 (ENSFHEG00000007293)	hal (ENSFHEG00000007436)	NTN4 (ENSFHEG00000007555)	metap2a (ENSFHEG00000007589)	nr2c1 (ENSFHEG00000007642)	tmcc3 (ENSFHEG00000007653)	ENSFHEG00000007676	FLNC (ENSFHEG00000007823)	ENSFHEG00000007849 ##22	parietopsin (ENSFHEG00000007890)	NT5DC3 (ENSFHEG00000007940)	hsp90b1 (ENSFHEG00000007987)	PRKAR2B (ENSFHEG00000008199)	hbp1 (ENSFHEG00000008222)	GPR22 (ENSFHEG00000008227)	ENSFHEG00000008242	SLCO1C1 (ENSFHEG00000008278)	PDE3A (ENSFHEG00000008361)	AEBP2 (ENSFHEG00000008393)	PLEKHA5 (ENSFHEG00000008449)	PLCZ1 (ENSFHEG00000008486)	PIK3C2G (ENSFHEG00000008546)	ENSFHEG00000008555	RELN (ENSFHEG00000008776)
Sheepshead minnow	MODERN SPECIES	252						CDK17 (ENSCVAG00000008309)	elk3 (ENSCVAG00000008346)	hal (ENSCVAG00000000237)	NTN4 (ENSCVAG00000008422)	metap2a (ENSCVAG00000008449)	FGD6 (ENSCVAG00000008473)	nr2c1 (ENSCVAG00000008530)	tmcc3 (ENSCVAG00000008549)	ENSCVAG00000008563	FLNC (ENSCVAG00000008703)	ENSCVAG00000008724 ##22	parietopsin (ENSCVAG00000008754)	NT5DC3 (ENSCVAG00000008805)	hsp90b1 (ENSCVAG00000008855)	PRKAR2B (ENSCVAG00000008889)	hbp1 (ENSCVAG00000008930)	GPR22 (ENSCVAG00000008935)	PDE3A (ENSCVAG00000009009)	ENSCVAG00000009029	PLEKHA5 (ENSCVAG00000009122)
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000163423.C.h
Platyfish	MODERN SPECIES	11	taf3 (ENSXMAG00000016881)	CELF2 (ENSXMAG00000016859)	dhtkd1 (ENSXMAG00000016835)	camk1db (ENSXMAG00000026212)	ucmab (ENSXMAG00000016795)	CDK17 (ENSXMAG00000016770)	elk3 (ENSXMAG00000016767)	hal (ENSXMAG00000016734)	NTN4 (ENSXMAG00000016726)	ENSXMAG00000016695	FGD6 (ENSXMAG00000016684)	nr2c1 (ENSXMAG00000016651)	tmcc3 (ENSXMAG00000016644)	ENSXMAG00000016643	FLNC (ENSXMAG00000016525)	ENSXMAG00000016505 ##22	ENSXMAG00000026933	parietopsin (ENSXMAG00000028800)	NT5DC3 (ENSXMAG00000016490)	hsp90b1 (ENSXMAG00000016460)	PRKAR2B (ENSXMAG00000024858)	hbp1 (ENSXMAG00000016455)	GPR22 (ENSXMAG00000019892)	ENSXMAG00000016451	SLCO1C1 (ENSXMAG00000016429)	PDE3A (ENSXMAG00000016416)	AEBP2 (ENSXMAG00000026296)	PTPRB (ENSXMAG00000016365)	frs2b (ENSXMAG00000024401)	nup160 (ENSXMAG00000016320)	ENSXMAG00000016263
Poecilia	ANCESTRAL SPECIES	5	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000163423.C.h
Guppy	MODERN SPECIES	458	ENSPREG00000004753	ENSPREG00000004703	fam107b (ENSPREG00000004692)	elapor2a (ENSPREG00000004639)	ENSPREG00000004457	CDK17 (ENSPREG00000004389)	elk3 (ENSPREG00000004380)	hal (ENSPREG00000004321)	NTN4 (ENSPREG00000004300)	ENSPREG00000004282	FGD6 (ENSPREG00000004265)	nr2c1 (ENSPREG00000004232)	tmcc3 (ENSPREG00000004222)	ENSPREG00000004210	FLNC (ENSPREG00000004187)	ENSPREG00000004160 ##22	ENSPREG00000004148	parietopsin (ENSPREG00000004119)	NT5DC3 (ENSPREG00000004083)	hsp90b1 (ENSPREG00000004049)	PRKAR2B (ENSPREG00000004020)	hbp1 (ENSPREG00000004000)	GPR22 (ENSPREG00000003993)	ENSPREG00000003980	SLCO1C1 (ENSPREG00000003963)	PDE3A (ENSPREG00000003898)	AEBP2 (ENSPREG00000003863)	PTPRB (ENSPREG00000003794)	frs2b (ENSPREG00000003767)	nup160 (ENSPREG00000003674)	ENSPREG00000003628
NAME_6	ANCESTRAL SPECIES	31	ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c
Sailfin molly	MODERN SPECIES	264												nr2c1 (ENSPLAG00000003394)	tmcc3 (ENSPLAG00000003366)	ENSPLAG00000003332	FLNC (ENSPLAG00000003285)	ENSPLAG00000003246 ##22	ENSPLAG00000003236	parietopsin (ENSPLAG00000003219)	NT5DC3 (ENSPLAG00000000837)	hsp90b1 (ENSPLAG00000003170)	PRKAR2B (ENSPLAG00000003155)	hbp1 (ENSPLAG00000003142)	GPR22 (ENSPLAG00000003133)	ENSPLAG00000003096	ENSPLAG00000000043	ENSPLAG00000002923
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	655	taf3 (ENSPFOG00000013168)	CELF2 (ENSPFOG00000013076)	dhtkd1 (ENSPFOG00000012901)	camk1db (ENSPFOG00000012864)	ucmab (ENSPFOG00000012847)	CDK17 (ENSPFOG00000012544)	elk3 (ENSPFOG00000012473)	hal (ENSPFOG00000012377)	NTN4 (ENSPFOG00000012291)	ENSPFOG00000012168	FGD6 (ENSPFOG00000012107)	nr2c1 (ENSPFOG00000012037)	tmcc3 (ENSPFOG00000012011)	ENSPFOG00000012007	FLNC (ENSPFOG00000011440)	ENSPFOG00000021885 ##22
Amazon molly	MODERN SPECIES	883																ENSPFOG00000003308 ##22	ENSPFOG00000022399	parietopsin (ENSPFOG00000003338)	NT5DC3 (ENSPFOG00000003361)	hsp90b1 (ENSPFOG00000003661)	PRKAR2B (ENSPFOG00000003946)	hbp1 (ENSPFOG00000003951)	GPR22 (ENSPFOG00000020695)	ENSPFOG00000003957	SLCO1C1 (ENSPFOG00000004136)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161	ENSGT00940000176894
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000177161	ENSGT00940000176894
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982	ENSGT00940000181238	ENSGT00940000177161
Clown anemonefish	MODERN SPECIES	1435								NTN4 (ENSAOCG00000000642)	ENSAOCG00000002192	ENSAOCG00000010375	FGD6 (ENSAOCG00000010431)	nr2c1 (ENSAOCG00000010489)	tmcc3 (ENSAOCG00000010506)	ENSAOCG00000010532	FLNC (ENSAOCG00000010648)	ENSAOCG00000010692 ##22	parietopsin (ENSAOCG00000010733)	NT5DC3 (ENSAOCG00000010781)	hsp90b1 (ENSAOCG00000010844)	PRKAR2B (ENSAOCG00000010875)	hbp1 (ENSAOCG00000010889)	rsrp1 (ENSAOCG00000001876)	syf2 (ENSAOCG00000010912)	tmem50a (ENSAOCG00000010940)	rhd (ENSAOCG00000000692)	maco1b (ENSAOCG00000011008)	ldlrap1b (ENSAOCG00000011043)	ENSAOCG00000011060	ENSAOCG00000011069	FNDC5 (ENSAOCG00000011085)	ENSAOCG00000011396
Orange clownfish	MODERN SPECIES	18	taf3 (ENSAPEG00000003384)	ENSAPEG00000003362	dhtkd1 (ENSAPEG00000003286)	camk1db (ENSAPEG00000003225)	ucmab (ENSAPEG00000003214)	CDK17 (ENSAPEG00000003139)	elk3 (ENSAPEG00000003108)	hal (ENSAPEG00000003002)	NTN4 (ENSAPEG00000002975)	ENSAPEG00000002926	FGD6 (ENSAPEG00000002847)	nr2c1 (ENSAPEG00000002804)	tmcc3 (ENSAPEG00000002771)	ENSAPEG00000002736	FLNC (ENSAPEG00000002601)	ENSAPEG00000002559 ##22	parietopsin (ENSAPEG00000002525)	NT5DC3 (ENSAPEG00000002463)	hsp90b1 (ENSAPEG00000002389)	PRKAR2B (ENSAPEG00000002341)	hbp1 (ENSAPEG00000002330)	GPR22 (ENSAPEG00000002313)	ENSAPEG00000002297	SLCO1C1 (ENSAPEG00000002192)	PDE3A (ENSAPEG00000002113)	AEBP2 (ENSAPEG00000002039)	PLEKHA5 (ENSAPEG00000001907)	PLCZ1 (ENSAPEG00000001843)	PIK3C2G (ENSAPEG00000001744)	ENSAPEG00000001674	ENSAPEG00000001648
Spiny chromis	MODERN SPECIES	716									ENSAPOG00000016465	ENSAPOG00000016456	FGD6 (ENSAPOG00000016443)	nr2c1 (ENSAPOG00000016420)	tmcc3 (ENSAPOG00000016357)	ENSAPOG00000016345	FLNC (ENSAPOG00000016321)	ENSAPOG00000016138 ##22	parietopsin (ENSAPOG00000016105)	ENSAPOG00000016046	NT5DC3 (ENSAPOG00000016026)	hsp90b1 (ENSAPOG00000015952)	PRKAR2B (ENSAPOG00000015874)	hbp1 (ENSAPOG00000015816)	GPR22 (ENSAPOG00000015804)
Bicolor damselfish	MODERN SPECIES	539	ENSSPAG00000005647	ENSSPAG00000005632	dhtkd1 (ENSSPAG00000005584)	camk1db (ENSSPAG00000005559)	ucmab (ENSSPAG00000005552)	CDK17 (ENSSPAG00000005501)	elk3 (ENSSPAG00000005477)	hal (ENSSPAG00000005437)	NTN4 (ENSSPAG00000005418)	ENSSPAG00000005386	FGD6 (ENSSPAG00000005362)	nr2c1 (ENSSPAG00000005336)	tmcc3 (ENSSPAG00000005308)	ENSSPAG00000005259	FLNC (ENSSPAG00000004974)	ENSSPAG00000004913 ##22	parietopsin (ENSSPAG00000004893)	NT5DC3 (ENSSPAG00000004854)	hsp90b1 (ENSSPAG00000004796)	PRKAR2B (ENSSPAG00000004758)	hbp1 (ENSSPAG00000004739)	GPR22 (ENSSPAG00000004731)	ENSSPAG00000004709	SLCO1C1 (ENSSPAG00000004670)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Midas cichlid	MODERN SPECIES	775	ENSACIG00000019430	taf3 (ENSACIG00000019422)	CELF2 (ENSACIG00000019405)	dhtkd1 (ENSACIG00000019377)	camk1db (ENSACIG00000019344)	ucmab (ENSACIG00000019335)	CDK17 (ENSACIG00000019321)	elk3 (ENSACIG00000019311)	hal (ENSACIG00000019291)	NTN4 (ENSACIG00000019270)	ENSACIG00000019253	FGD6 (ENSACIG00000019200)	nr2c1 (ENSACIG00000019177)	tmcc3 (ENSACIG00000019166)	FLNC (ENSACIG00000019099)	ENSACIG00000019088 ##22	parietopsin (ENSACIG00000019059)	NT5DC3 (ENSACIG00000019036)	hsp90b1 (ENSACIG00000019012)	PRKAR2B (ENSACIG00000018924)	hbp1 (ENSACIG00000018873)	GPR22 (ENSACIG00000018863)	ENSACIG00000018852	SLCO1C1 (ENSACIG00000018812)	PDE3A (ENSACIG00000018767)	AEBP2 (ENSACIG00000018716)	PLEKHA5 (ENSACIG00000018651)	PLCZ1 (ENSACIG00000018596)	ENSACIG00000018579	ENSACIG00000018571	RELN (ENSACIG00000018448)
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Nile tilapia	MODERN SPECIES	19	dhtkd1 (ENSONIG00000008620)	camk1db (ENSONIG00000008609)	ucmab (ENSONIG00000008606)	CDK17 (ENSONIG00000008599)	elk3 (ENSONIG00000008595)	hal (ENSONIG00000008586)	NTN4 (ENSONIG00000008581)	ENSONIG00000042951	ENSONIG00000040874	FGD6 (ENSONIG00000008572)	ENSONIG00000041455	nr2c1 (ENSONIG00000008566)	tmcc3 (ENSONIG00000037000)	ENSONIG00000008561	FLNC (ENSONIG00000008549)	ENSONIG00000008547 ##22	parietopsin (ENSONIG00000008543)	NT5DC3 (ENSONIG00000008537)	hsp90b1 (ENSONIG00000008526)	PRKAR2B (ENSONIG00000041012)	hbp1 (ENSONIG00000008523)	GPR22 (ENSONIG00000021088)	ENSONIG00000008519	SLCO1C1 (ENSONIG00000008514)	PDE3A (ENSONIG00000008508)	AEBP2 (ENSONIG00000008507)	PLEKHA5 (ENSONIG00000008501)	PLCZ1 (ENSONIG00000008494)	ENSONIG00000032459	ENSONIG00000031014	ENSONIG00000028382
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Lyretail cichlid	MODERN SPECIES	293	ENSNBRG00000021416	taf3 (ENSNBRG00000000296)	CELF2 (ENSNBRG00000000322)	dhtkd1 (ENSNBRG00000000369)	camk1db (ENSNBRG00000000417)	ucmab (ENSNBRG00000000463)	CDK17 (ENSNBRG00000000488)	elk3 (ENSNBRG00000000544)	hal (ENSNBRG00000000566)	NTN4 (ENSNBRG00000000644)	ENSNBRG00000000711	nr2c1 (ENSNBRG00000000757)	tmcc3 (ENSNBRG00000000817)	ENSNBRG00000000821	FLNC (ENSNBRG00000000849)	ENSNBRG00000001024 ##22	parietopsin (ENSNBRG00000001046)	NT5DC3 (ENSNBRG00000001091)	hsp90b1 (ENSNBRG00000001148)	PRKAR2B (ENSNBRG00000001214)	hbp1 (ENSNBRG00000001405)	GPR22 (ENSNBRG00000001421)	ENSNBRG00000001434	SLCO1C1 (ENSNBRG00000001456)	PDE3A (ENSNBRG00000001580)	AEBP2 (ENSNBRG00000001648)	PLEKHA5 (ENSNBRG00000001692)	PLCZ1 (ENSNBRG00000001819)	PIK3C2G (ENSNBRG00000001860)	ENSNBRG00000001931	RELN (ENSNBRG00000001958)
Haplochromini	ANCESTRAL SPECIES		ENSGT00710000106806	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Burton s mouthbrooder	MODERN SPECIES	372	taf3 (ENSHBUG00000005738)	CELF2 (ENSHBUG00000005718)	dhtkd1 (ENSHBUG00000005688)	camk1db (ENSHBUG00000005639)	ucmab (ENSHBUG00000005610)	CDK17 (ENSHBUG00000005602)	elk3 (ENSHBUG00000005582)	hal (ENSHBUG00000005550)	NTN4 (ENSHBUG00000005473)	ENSHBUG00000005442	FGD6 (ENSHBUG00000000136)	nr2c1 (ENSHBUG00000005414)	tmcc3 (ENSHBUG00000005351)	ENSHBUG00000005332	FLNC (ENSHBUG00000005296)	ENSHBUG00000005212 ##22	parietopsin (ENSHBUG00000005174)	NT5DC3 (ENSHBUG00000005139)	hsp90b1 (ENSHBUG00000005052)	PRKAR2B (ENSHBUG00000000124)	hbp1 (ENSHBUG00000004967)	GPR22 (ENSHBUG00000004953)	ENSHBUG00000004943	SLCO1C1 (ENSHBUG00000004910)	PDE3A (ENSHBUG00000004804)	AEBP2 (ENSHBUG00000004757)	PLEKHA5 (ENSHBUG00000004667)	PLCZ1 (ENSHBUG00000004211)	PIK3C2G (ENSHBUG00000004187)	ENSHBUG00000004119	RELN (ENSHBUG00000004094)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000179695	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
P. nyererei	MODERN SPECIES	322	ENSPNYG00000002565	dhtkd1 (ENSPNYG00000002505)	camk1db (ENSPNYG00000002468)	ENSPNYG00000002450	CDK17 (ENSPNYG00000002270)	elk3 (ENSPNYG00000002239)	hal (ENSPNYG00000002173)	NTN4 (ENSPNYG00000002094)	ENSPNYG00000001886	ENSPNYG00000001847	FGD6 (ENSPNYG00000001773)	nr2c1 (ENSPNYG00000001713)	tmcc3 (ENSPNYG00000001671)	ENSPNYG00000001647	FLNC (ENSPNYG00000001480)	ENSPNYG00000001455 ##22	ENSPNYG00000001444	parietopsin (ENSPNYG00000001411)	NT5DC3 (ENSPNYG00000001368)	hsp90b1 (ENSPNYG00000001316)	PRKAR2B (ENSPNYG00000001096)	hbp1 (ENSPNYG00000001079)	GPR22 (ENSPNYG00000001055)	ENSPNYG00000001043	SLCO1C1 (ENSPNYG00000000979)	PDE3A (ENSPNYG00000000931)	AEBP2 (ENSPNYG00000000894)	PLEKHA5 (ENSPNYG00000000793)	PLCZ1 (ENSPNYG00000000754)	PIK3C2G (ENSPNYG00000000680)	ENSPNYG00000022075
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00940000155461.E	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000179695	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT00940000164988	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT01030000234874.b	ENSGT00510000048519.b	ENSGT00940000155728.o	ENSGT00940000159950	ENSGT00940000159982
Zebra mbuna	MODERN SPECIES	1110	dhtkd1 (ENSMZEG00005006901)	camk1db (ENSMZEG00005006862)	ucmab (ENSMZEG00005006830)	CDK17 (ENSMZEG00005006744)	elk3 (ENSMZEG00005006726)	hal (ENSMZEG00005006684)	NTN4 (ENSMZEG00005006663)	metap2a (ENSMZEG00005006651)	ENSMZEG00005006598	ENSMZEG00005006551	nr2c1 (ENSMZEG00005006503)	tmcc3 (ENSMZEG00005006496)	ENSMZEG00005006481	FLNC (ENSMZEG00005006267)	ENSMZEG00005006211	ENSMZEG00005006178 ##22	ENSMZEG00005006163	parietopsin (ENSMZEG00005006134)	NT5DC3 (ENSMZEG00005006087)	hsp90b1 (ENSMZEG00005006031)	PRKAR2B (ENSMZEG00005006013)	hbp1 (ENSMZEG00005005999)	GPR22 (ENSMZEG00005005980)	ENSMZEG00005005966	SLCO1C1 (ENSMZEG00005005933)	PDE3A (ENSMZEG00005005894)	ENSMZEG00005005883	AEBP2 (ENSMZEG00005005850)	PLEKHA5 (ENSMZEG00005005745)	PLCZ1 (ENSMZEG00005005713)	PIK3C2G (ENSMZEG00005005692)
Eastern happy	MODERN SPECIES	19	CELF2 (ENSACLG00000003085)	dhtkd1 (ENSACLG00000003133)	camk1db (ENSACLG00000003189)	ucmab (ENSACLG00000003214)	CDK17 (ENSACLG00000003240)	elk3 (ENSACLG00000003309)	hal (ENSACLG00000003338)	NTN4 (ENSACLG00000003434)	ENSACLG00000003520	FGD6 (ENSACLG00000004184)	ENSACLG00000004217	nr2c1 (ENSACLG00000004287)	tmcc3 (ENSACLG00000004348)	ENSACLG00000004372	FLNC (ENSACLG00000004401)	ENSACLG00000004537 ##22	ENSACLG00000004580	parietopsin (ENSACLG00000004601)	NT5DC3 (ENSACLG00000004645)	hsp90b1 (ENSACLG00000004667)	PRKAR2B (ENSACLG00000004727)	hbp1 (ENSACLG00000004758)	GPR22 (ENSACLG00000005034)	ENSACLG00000005037	SLCO1C1 (ENSACLG00000005049)	PDE3A (ENSACLG00000005073)	ENSACLG00000005102	ENSACLG00000005113	LHFPL3 (ENSACLG00000005140)	RELN (ENSACLG00000005494)	ENSACLG00000005591
Tiger tail seahorse	MODERN SPECIES	311	ENSHCOG00000011261	TAF3 (ENSHCOG00000011307)	ENSHCOG00000011353	dhtkd1 (ENSHCOG00000011402)	camk1db (ENSHCOG00000011435)	ucmab (ENSHCOG00000011464)	ENSHCOG00000011468	hal (ENSHCOG00000011530)	FGD6 (ENSHCOG00000011545)	nr2c1 (ENSHCOG00000011584)	tmcc3 (ENSHCOG00000011605)	ENSHCOG00000011620	ENSHCOG00000011631	ENSHCOG00000011649	ENSHCOG00000011678	ENSHCOG00000011706 ##22	parietopsin (ENSHCOG00000011717)	NT5DC3 (ENSHCOG00000011744)	hsp90b1 (ENSHCOG00000011791)	ENSHCOG00000011864	hbp1 (ENSHCOG00000011877)	GPR22 (ENSHCOG00000011890)	idh2 (ENSHCOG00000011933)	znf710a (ENSHCOG00000011956)	sema4ba (ENSHCOG00000011978)	zgc:162879 (ENSHCOG00000012026)	ENSHCOG00000012050	ENSHCOG00000012065	pex11a (ENSHCOG00000012078)	slco3a1a (ENSHCOG00000012097)	kif5c (ENSHCOG00000012129)
Pinecone sodierfish	MODERN SPECIES	20	ENSMMDG00005014409	ENSMMDG00005014412	ENSMMDG00005014415	bmt2 (ENSMMDG00005014417)	TMEM168 (ENSMMDG00005014421)	ptdss2 (ENSMMDG00005014443)	cdkn1ca (ENSMMDG00005015258)	ENSMMDG00005015262	ifitm5 (ENSMMDG00005015267)	NTN4 (ENSMMDG00005015271)	ENSMMDG00005015278	FGD6 (ENSMMDG00005015286)	nr2c1 (ENSMMDG00005015318)	tmcc3 (ENSMMDG00005016963)	FLNC (ENSMMDG00005016986)	ENSMMDG00005017016 ##22	parietopsin (ENSMMDG00005017023)	NT5DC3 (ENSMMDG00005017060)	hsp90b1 (ENSMMDG00005018340)	PRKAR2B (ENSMMDG00005018354)	hbp1 (ENSMMDG00005018366)	ENSMMDG00005018419	ENSMMDG00005018426	SLCO1C1 (ENSMMDG00005018468)	PDE3A (ENSMMDG00005018698)	AEBP2 (ENSMMDG00005018702)	PLEKHA5 (ENSMMDG00005018705)	PLCZ1 (ENSMMDG00005018847)	ENSMMDG00005018855	ENSMMDG00005018860	ENSMMDG00005018863
Cod	MODERN SPECIES	22	cep290 (ENSGMOG00000010306)	TMTC3 (ENSGMOG00000010287)	kitlga (ENSGMOG00000031530)	ENSGMOG00000001936	dusp6 (ENSGMOG00000001929)	poc1b (ENSGMOG00000010639)	cep41 (ENSGMOG00000010629)	ENSGMOG00000037089	ENSGMOG00000030141	ENSGMOG00000016975	ENSGMOG00000028914	ENSGMOG00000017065	ENSGMOG00000018310	ENSGMOG00000018291	ENSGMOG00000031789	ENSGMOG00000013910 ##22	ENSGMOG00000016578	ENSGMOG00000013875	ENSGMOG00000013836	PRKAR2B (ENSGMOG00000013805)	ENSGMOG00000013782	GPR22 (ENSGMOG00000028934)	ENSGMOG00000034754	ENSGMOG00000013758	ENSGMOG00000027385	ENSGMOG00000013759	ENSGMOG00000036205	ENSGMOG00000013832	ENSGMOG00000032868	ENSGMOG00000033132	ENSGMOG00000027108
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00950000183125.a	ENSGT00940000156776.d.b.a	ENSGT00390000011492.b	ENSGT00940000155834.i.b	ENSGT00940000157129.f.a	ENSGT00390000009047.b	ENSGT00940000153110.B.f	ENSGT00940000154818.e.b	ENSGT00940000156615.b	ENSGT00940000167341	ENSGT00940000156334.a.a	ENSGT00940000158165	ENSGT00940000157275.b	ENSGT00940000159122.g	ENSGT00940000153588.a.a.b	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637	ENSGT01020000230401.b.a	ENSGT00940000158078	ENSGT00940000153969.a	ENSGT00950000182994.B.a.b.ob	ENSGT00940000160326.c.b	ENSGT00940000160592	ENSGT00940000160326.c.a	ENSGT00940000155849.h	ENSGT00390000001702	ENSGT00730000111314	ENSGT00940000159167	ENSGT00950000183042.a.b.a	ENSGT00940000157926
Salmoninae	ANCESTRAL SPECIES	171	ENSGT00940000155834.i.b.b	ENSGT00940000155834.i.b.a.b	ENSGT00940000157129.f.a.b	ENSGT00390000009047.b.z	ENSGT01070000255793	ENSGT00940000164757	ENSGT00940000156615.b	ENSGT00940000167341.b	ENSGT00940000153655.B	ENSGT00940000157922.a.b	ENSGT00940000156334.a.a	ENSGT00940000158165.b	ENSGT00940000157275.b.b	ENSGT00940000159122.g.b	ENSGT00940000153588.a.a.b.e	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637.e	ENSGT01020000230401.b.a.e.a
Salmoninae_a	ANCESTRAL SPECIES	65	ENSGT00940000156776.d.b.a.d	ENSGT00940000155834.i.b.b	ENSGT00940000157129.f.a.b	ENSGT00390000009047.b.z	ENSGT00940000153110.B.f	ENSGT00940000154818.e.b	ENSGT00940000156615.b	ENSGT00940000167341.b	ENSGT00940000153655.B	ENSGT00940000157922.a.b	ENSGT00940000156334.a.a	ENSGT00940000158165.b	ENSGT00940000157275.b.b	ENSGT00940000159122.g.b	ENSGT00940000153588.a.a.b.e	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637.e	ENSGT01020000230401.b.a.e.a	ENSGT00940000161245	ENSGT00940000153456.b.a.cb	ENSGT00940000158160.i.a	ENSGT00390000011239.i.f	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b	ENSGT00940000155728.o.a.b	ENSGT00580000081623.y.a.b	ENSGT00990000203541.a.a.a.a.b.c.b
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00950000183125.a.a.b	ENSGT00940000156776.d.b.a.d	ENSGT00940000155834.i.b.b.a	ENSGT00940000157129.f.a.b	ENSGT00390000009047.b.z	ENSGT00940000153110.B.f	ENSGT00940000154818.e.b	ENSGT00940000156615.b	ENSGT00940000167341.b	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165.b	ENSGT00940000157275.b.b	ENSGT00940000159122.g.b	ENSGT00940000153588.a.a.b.e	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637.e	ENSGT01020000230401.b.a.e.a	ENSGT00940000161245	ENSGT00940000153456.b.a.cb	ENSGT00940000158160.i.a	ENSGT00390000011239.i.f	ENSGT01030000234518.A.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00940000167872.d.a	ENSGT00940000155728.o.a.a	ENSGT00940000159950	ENSGT00940000159982
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00950000183125.a.a.b	ENSGT00940000156776.d.b.a.d	ENSGT00940000155834.i.b.b.a	ENSGT00940000157129.f.a.b	ENSGT00390000009047.b.z	ENSGT00940000153110.B.f	ENSGT00940000154818.e.b.d	ENSGT00940000156615.b	ENSGT00940000167341.b	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165.b	ENSGT00940000157275.b.b	ENSGT00940000159122.g.b	ENSGT00940000153588.a.a.b.e	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637.e	ENSGT01020000230401.b.a.e.a	ENSGT00940000161245	ENSGT00940000153456.b.a.cb	ENSGT00940000158160.i.a	ENSGT00390000011239.i.f	ENSGT01030000234518.A.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00940000167872.d.a	ENSGT00940000155728.o.a.a	ENSGT00940000159950	ENSGT00940000159982
Chinook salmon	MODERN SPECIES	10	ENSOTSG00005002727	ENSOTSG00005002735	gdi2 (ENSOTSG00005002748)	ENSOTSG00005002898	taf3 (ENSOTSG00005002901)	ENSOTSG00005002907	ENSOTSG00005002914	dhtkd1 (ENSOTSG00005002971)	CDK17 (ENSOTSG00005004329)	elk3 (ENSOTSG00005004332)	hal (ENSOTSG00005004349)	ENSOTSG00005007091	snrpf (ENSOTSG00005007092)	NTN4 (ENSOTSG00005007093)	FLNC (ENSOTSG00005007130)	ENSOTSG00005008720 ##22	ENSOTSG00005008721	pgghg (ENSOTSG00005008722)	metap2a (ENSOTSG00005008723)	nr2c1 (ENSOTSG00005008727)	ENSOTSG00005008733	ENSOTSG00005008734	SLCO1C1 (ENSOTSG00005008735)	ENSOTSG00005008741	ENSOTSG00005008742	ENSOTSG00005008743	ube2q2 (ENSOTSG00005008745)	SCAMP5 (ENSOTSG00005008747)	parp16 (ENSOTSG00005008749)	parp16 (ENSOTSG00005008750)	ENSOTSG00005008755
Coho salmon	MODERN SPECIES	14	CDK17 (ENSOKIG00005020000)	ELK3 (ENSOKIG00005020245)	hal (ENSOKIG00005020375)	snrpf (ENSOKIG00005022038)	NTN4 (ENSOKIG00005022048)	ENSOKIG00005022068	ENSOKIG00005022229	FGD6 (ENSOKIG00005022245)	nr2c1 (ENSOKIG00005022392)	TMCC3 (ENSOKIG00005023233)	ENSOKIG00005023255	ENSOKIG00005023289	FLNC (ENSOKIG00005023423)	ENSOKIG00005028515	ENSOKIG00005028530	ENSOKIG00005028565 ##22	parietopsin (ENSOKIG00005028620)	ENSOKIG00005028695	HSP90B1 (ENSOKIG00005029459)	ENSOKIG00005029878	NAMPT (ENSOKIG00005029903)	PRKAR2B (ENSOKIG00005030239)	ENSOKIG00005030324	hbp1 (ENSOKIG00005030335)	ENSOKIG00005030425	ENSOKIG00005030452	SLCO1C1 (ENSOKIG00005030491)	ENSOKIG00005030635	PDE3A (ENSOKIG00005030647)	ENSOKIG00005006117	PLEKHA5 (ENSOKIG00005006174)
Rainbow trout	MODERN SPECIES	11	CDK17 (ENSOMYG00000016470)	ENSOMYG00000077575	ELK3 (ENSOMYG00000016504)	HAL (ENSOMYG00000016531)	CCDC38 (ENSOMYG00000017530)	SNRPF (ENSOMYG00000058659)	NTN4 (ENSOMYG00000017610)	ENSOMYG00000017770	ENSOMYG00000017833	FGD6 (ENSOMYG00000017867)	NR2C1 (ENSOMYG00000017998)	TMCC3 (ENSOMYG00000063782)	ENSOMYG00000067619	ENSOMYG00000055317	ENSOMYG00000018863	ENSOMYG00000020041 ##22	ENSOMYG00000011783	ENSOMYG00000020048	ENSOMYG00000020053	grp94 (ENSOMYG00000020122)	NAMPT (ENSOMYG00000020821)	PRKAR2B (ENSOMYG00000048316)	HBP1 (ENSOMYG00000023046)	ENSOMYG00000060034	ENSOMYG00000062515	ENSOMYG00000000115	ENSOMYG00000000134	SLCO1C1 (ENSOMYG00000000148)	PDE3A (ENSOMYG00000000190)	PLEKHA5 (ENSOMYG00000000226)	ENSOMYG00000027948
Salmo	ANCESTRAL SPECIES	60	ENSGT00950000183125.a.a.b	ENSGT00940000156776.d.b.a.d	ENSGT00940000155834.i.b.a.b	ENSGT00940000157129.f.a.b	ENSGT00390000009047.b.z.b	ENSGT00940000153110.B.f	ENSGT00940000164757.a	ENSGT00940000156615.b	ENSGT00940000167341.b	ENSGT00940000153655.B	ENSGT00940000156334.a.a	ENSGT00940000158165.b	ENSGT00940000157275.b.b	ENSGT00940000159122.g.b	ENSGT00940000153588.a.a.b.e	ENSGT00940000155472.a.b.a.b ##22	ENSGT01100000263502.A.b.b	ENSGT00940000158637.e	ENSGT01020000230401.b.a.e.a	ENSGT00940000161245	ENSGT00940000153456.b.a.cb	ENSGT00940000158160.i.a	ENSGT00390000011239.i.f	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011863.d.a.b	ENSGT01080000257336.b.e.b.a.a.c	ENSGT00940000156628.d	ENSGT00510000048519.b.c	ENSGT00940000155728.o.a.a	ENSGT00940000159950	ENSGT00940000159982
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000113798	ELK3 (ENSSSAG00000007647)	hal (ENSSSAG00000007680)	CCDC38 (ENSSSAG00000008350)	ENSSSAG00000008364	ENSSSAG00000008389	ENSSSAG00000009161	FGD6 (ENSSSAG00000009198)	NR2C1 (ENSSSAG00000009262)	TMCC3 (ENSSSAG00000009291)	ENSSSAG00000087913	ENSSSAG00000092545	ENSSSAG00000009590	ENSSSAG00000105369	ENSSSAG00000092273	ENSSSAG00000042589 ##22	ENSSSAG00000042598	ENSSSAG00000042652	ENSSSAG00000043708	NAMPT (ENSSSAG00000044030)	PRKAR2B (ENSSSAG00000045590)	HBP1 (ENSSSAG00000046145)	gpr22 (ENSSSAG00000046177)	ENSSSAG00000115921	SLCO1C1 (ENSSSAG00000046263)	PDE3A (ENSSSAG00000050899)	ENSSSAG00000117046	AEBP2 (ENSSSAG00000056460)	ENSSSAG00000095263	PLEKHA5 (ENSSSAG00000054483)	PLCZ1 (ENSSSAG00000054398)
River trout	MODERN SPECIES	37	dhtkd1 (ENSSTUG00000015357)	camk1db (ENSSTUG00000017654)	CDK17 (ENSSTUG00000018320)	elk3 (ENSSTUG00000019202)	hal (ENSSTUG00000019241)	ENSSTUG00000020018	ENSSTUG00000020029	NTN4 (ENSSTUG00000020034)	metap2a (ENSSTUG00000020059)	ENSSTUG00000020278	FGD6 (ENSSTUG00000020300)	nr2c1 (ENSSTUG00000020574)	tmcc3 (ENSSTUG00000020606)	ENSSTUG00000020629	FLNC (ENSSTUG00000021115)	ENSSTUG00000039368 ##22	parietopsin (ENSSTUG00000039374)	ENSSTUG00000039409	HSP90B1 (ENSSTUG00000040801)	ENSSTUG00000041140	NAMPT (ENSSTUG00000041241)	PRKAR2B (ENSSTUG00000043425)	hbp1 (ENSSTUG00000043477)	GPR22 (ENSSTUG00000043617)	ENSSTUG00000043626	SLCO1C1 (ENSSTUG00000043682)	PDE3A (ENSSTUG00000044435)	AEBP2 (ENSSTUG00000044579)	PLEKHA5 (ENSSTUG00000044584)	ENSSTUG00000044681	ENSSTUG00000044696
Huchen	MODERN SPECIES	8410																ENSHHUG00000006762 ##22
Northern pike	MODERN SPECIES	18	dhtkd1 (ENSELUG00000008213)	camk1db (ENSELUG00000008100)	CDK17 (ENSELUG00000007898)	elk3 (ENSELUG00000007836)	hal (ENSELUG00000007804)	ENSELUG00000007760	snrpf (ENSELUG00000007737)	NTN4 (ENSELUG00000007724)	metap2a (ENSELUG00000007703)	ENSELUG00000033148	FGD6 (ENSELUG00000007670)	nr2c1 (ENSELUG00000007641)	tmcc3 (ENSELUG00000007578)	ENSELUG00000007550	FLNC (ENSELUG00000007451)	ENSELUG00000007275 ##22	parietopsin (ENSELUG00000001367)	NT5DC3 (ENSELUG00000007226)	hsp90b1 (ENSELUG00000007182)	SYPL1 (ENSELUG00000007126)	NAMPT (ENSELUG00000007097)	PRKAR2B (ENSELUG00000000244)	hbp1 (ENSELUG00000006967)	ENSELUG00000006943	BCAP29 (ENSELUG00000000225)	SLCO1C1 (ENSELUG00000006913)	PDE3A (ENSELUG00000006882)	AEBP2 (ENSELUG00000000215)	PLEKHA5 (ENSELUG00000006755)	PLCZ1 (ENSELUG00000006650)	ENSELUG00000026965
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Sailfin molly	MODERN SPECIES	3221																ENSPLAG00000007364 ##22
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Sheepshead minnow	MODERN SPECIES	513	rpl18a (ENSCVAG00000020360)	tnpo3 (ENSCVAG00000020285)	irf5 (ENSCVAG00000020118)	ENSCVAG00000020090	ENSCVAG00000020029	ENSCVAG00000019976	ENSCVAG00000019931	ENSCVAG00000019902	svopl (ENSCVAG00000019866)	opn1sw1 (ENSCVAG00000019796)	opn1sw1 (ENSCVAG00000019774)	calua (ENSCVAG00000019744)	sco2 (ENSCVAG00000019716)	ncaph2 (ENSCVAG00000019673)	ENSCVAG00000019603	ENSCVAG00000019576 ##22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Mangrove rivulus	MODERN SPECIES	1113																ENSKMAG00000001575 ##22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Bicolor damselfish	MODERN SPECIES	1573									PTPRO (ENSSPAG00000000965)	ENSSPAG00000001056	socs2 (ENSSPAG00000001062)	FLNC (ENSSPAG00000001082)	ENSSPAG00000001240	sco2 (ENSSPAG00000001325)	ncaph2 (ENSSPAG00000001337)	ENSSPAG00000001385 ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Channel bull blenny	MODERN SPECIES	38								cradd (ENSCGOG00000014596)	socs2 (ENSCGOG00000014598)	sco2 (ENSCGOG00000014599)	ncaph2 (ENSCGOG00000014600)	ENSCGOG00000014602	FLNC (ENSCGOG00000014683)	ENSCGOG00000017616	ENSCGOG00000017625	ENSCGOG00000017627 ##22
Ballan wrasse	MODERN SPECIES	3006																ENSLBEG00000003021 ##22
Tetraodontidae	ANCESTRAL SPECIES	112				ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443	ENSGT00390000004323.a	ENSGT00940000155472.a.b.b ##22	ENSGT00510000047764 #23	ENSGT00940000156619.f #24	ENSGT00940000157480 #26
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000006197	TAAR1 (ENSTNIG00000001226)	TAAR1 (ENSTNIG00000005193)	TAAR1 (ENSTNIG00000000218)	TAAR1 (ENSTNIG00000001471)	ENSTNIG00000006156	MMP17 (ENSTNIG00000006155)	ULK1 (ENSTNIG00000006154)	crkl (ENSTNIG00000006153)	MMP17 (ENSTNIG00000006152)	ENSTNIG00000000082	pgam2 (ENSTNIG00000006151)	nefma (ENSTNIG00000006150)	ENSTNIG00000006149	FLNC (ENSTNIG00000006148)	ENSTNIG00000000192 ##22	ENSTNIG00000006147 ##22	tspan12 (ENSTNIG00000000260) #23	tspan12 (ENSTNIG00000006146) #23	trnau1apa (ENSTNIG00000006129)	sacm1la (ENSTNIG00000006128)	nfasca (ENSTNIG00000006125)	cntn2 (ENSTNIG00000006124)	chia.3 (ENSTNIG00000006123)	chia.1 (ENSTNIG00000000017)	ENSTNIG00000006120	cldn10a (ENSTNIG00000006119)	ENSTNIG00000006118	ANKRD33B (ENSTNIG00000005744)	ENSTNIG00000006115	ENSTNIG00000006114
Tetraodon	MODERN SPECIES	26	TAAR1 (ENSTNIG00000001226)	TAAR1 (ENSTNIG00000005193)	TAAR1 (ENSTNIG00000000218)	TAAR1 (ENSTNIG00000001471)	ENSTNIG00000006156	MMP17 (ENSTNIG00000006155)	ULK1 (ENSTNIG00000006154)	crkl (ENSTNIG00000006153)	MMP17 (ENSTNIG00000006152)	ENSTNIG00000000082	pgam2 (ENSTNIG00000006151)	nefma (ENSTNIG00000006150)	ENSTNIG00000006149	FLNC (ENSTNIG00000006148)	ENSTNIG00000000192 ##22	ENSTNIG00000006147 ##22	tspan12 (ENSTNIG00000000260) #23	tspan12 (ENSTNIG00000006146) #23	trnau1apa (ENSTNIG00000006129)	sacm1la (ENSTNIG00000006128)	nfasca (ENSTNIG00000006125)	cntn2 (ENSTNIG00000006124)	chia.3 (ENSTNIG00000006123)	chia.1 (ENSTNIG00000000017)	ENSTNIG00000006120	cldn10a (ENSTNIG00000006119)	ENSTNIG00000006118	ANKRD33B (ENSTNIG00000005744)	ENSTNIG00000006115	ENSTNIG00000006114	pcgf5a (ENSTNIG00000006113)
Fugu	MODERN SPECIES	9										cradd (ENSTRUG00000024874)	ENSTRUG00000031404	socs2 (ENSTRUG00000027093)	ENSTRUG00000031324	sco2 (ENSTRUG00000026134)	ENSTRUG00000026406	ENSTRUG00000031645 ##22	tspan12 (ENSTRUG00000020619) #23	ing3 (ENSTRUG00000001599) #24	wnt16 (ENSTRUG00000011840) #26	CNOT2 (ENSTRUG00000002202)	ENSTRUG00000029176	ENSTRUG00000028949	ENSTRUG00000020888	KCNA1 (ENSTRUG00000001616)	ENSTRUG00000002493	ENSTRUG00000021771	nup50 (ENSTRUG00000031740)	kiaa0930 (ENSTRUG00000000520)	ENSTRUG00000031655	irf5 (ENSTRUG00000031494)	tnpo3 (ENSTRUG00000000485)
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Barramundi perch	MODERN SPECIES	60	gpr19 (ENSLCAG00010020504)	crebl2 (ENSLCAG00010020507)	tbk1 (ENSLCAG00010020516)	lrp6 (ENSLCAG00010020570)	ENSLCAG00010020833	C11orf98 (ENSLCAG00010020836)	pthlha (ENSLCAG00010020842)	rpl18a (ENSLCAG00010020846)	xpot (ENSLCAG00010020874)	rtcb (ENSLCAG00010020903)	fbxo7 (ENSLCAG00010020957)	ncaph2 (ENSLCAG00010021066)	sco2 (ENSLCAG00010021071)	ENSLCAG00010021074	FLNC (ENSLCAG00010021189)	ENSLCAG00010021566 ##22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Yellowtail amberjack	MODERN SPECIES	1980																ENSSLDG00000005442 ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Golden-line barbel	MODERN SPECIES	2942																ENSSGRG00000004952 ##22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000155472.a.b.b ##22
Characoidei	ANCESTRAL SPECIES	37	ENSGT00940000154983.c.b	ENSGT00940000158225.i.a	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000155263	ENSGT00940000154380.a.a.b	ENSGT00390000011669	ENSGT00940000158078	ENSGT01020000230401.b.a.b.b	ENSGT00530000064216	ENSGT00390000004697	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.b ##22	ENSGT00510000047764 #23	ENSGT00940000156619 #24	ENSGT00390000015216 #25	ENSGT00940000157480 #26	ENSGT01100000263502.A.b.b.f	ENSGT00940000156566	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00990000209684	ENSGT00940000160326.c.a	ENSGT00940000160326.c.b	ENSGT00950000182994.B.a.b	ENSGT00940000153969.a	ENSGT00620000087961.a.b.a.b.a	ENSGT00940000167336
Mexicana tetra	MODERN SPECIES	22	dmtf1 (ENSAMXG00000009768)	elapor2b (ENSAMXG00000009791)	tspan9b (ENSAMXG00000039271)	mical3b (ENSAMXG00000009859)	svopl (ENSAMXG00000009897)	ENSAMXG00000009908	parp12b (ENSAMXG00000009919)	sbf1 (ENSAMXG00000009954)	adm2a (ENSAMXG00000037970)	fbxo18 (ENSAMXG00000020772)	glt8d2 (ENSAMXG00000010056)	hsp90b1 (ENSAMXG00000010077)	ENSAMXG00000030034	ENSAMXG00000010129	FLNC (ENSAMXG00000010152)	ENSAMXG00000035862 ##22	tspan12 (ENSAMXG00000043991) #23	ing3 (ENSAMXG00000040580) #24	CPED1 (ENSAMXG00000010211) #25	wnt16 (ENSAMXG00000035745) #26	parietopsin (ENSAMXG00000010213)	stab2 (ENSAMXG00000010220)	ENSAMXG00000010242	mkln1 (ENSAMXG00000010259)	net1 (ENSAMXG00000010286)
Red-bellied piranha	MODERN SPECIES	1025																kcnd2 (ENSPNAG00000016611) ##22	ENSPNAG00000016627