Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00940000157771	ENSGT00940000156205	ENSGT00940000160583 #7	ENSGT00940000158773 #8	ENSGT01030000234515.a.b.a.b #9	ENSGT00390000001790 #11	ENSGT00940000158068 #12	ENSGT00940000158815 #13	ENSGT00940000160363 #14	ENSGT01050000244857.C.a.a #16	ENSGT00390000015688 #17	ENSGT00940000153289.b #18	ENSGT00940000159506 #19	ENSGT00940000158389 #20	ENSGT00940000159348 #21	ENSGT00940000155164 #22	ENSGT00530000063335.A #23	ENSGT00940000158943 #24	ENSGT00940000153941.a.a #25	ENSGT00390000011359 #26	ENSGT00390000018637 #27	ENSGT00940000156900 #28	ENSGT00940000155024 #29	ENSGT00940000161911 #32	ENSGT00940000158999 #33	ENSGT00940000154617.B #34	ENSGT00950000183077.a.a.a.b	ENSGT00940000163006 #35	ENSGT00940000163084	ENSGT00390000009320 #36	ENSGT00940000158222 #37
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00940000157771	ENSGT00940000156205	ENSGT00940000160583 #7	ENSGT00940000158773 #8	ENSGT01030000234515.a.b.a.b #9	ENSGT00390000001790 #11	ENSGT00940000158068 #12	ENSGT00940000158815 #13	ENSGT00940000160363 #14	ENSGT01050000244857.C.a.a #16	ENSGT00390000015688 #17	ENSGT00940000153289.b #18	ENSGT00940000159506 #19	ENSGT00940000158389 #20	ENSGT00940000159348 #21	ENSGT00940000155164 #22	ENSGT00530000063335.A #23	ENSGT00940000158943 #24	ENSGT00940000153941.a.a #25	ENSGT00390000011359 #26	ENSGT00390000018637 #27	ENSGT00940000156900 #28	ENSGT00940000155024 #29	ENSGT00940000161911 #32	ENSGT00940000158999 #33	ENSGT00940000154617.B #34	ENSGT00950000183077.a.a.a.b	ENSGT00940000163006 #35	ENSGT00940000163084	ENSGT00390000009320 #36	ENSGT00940000158222 #37
Degu	MODERN SPECIES	43	LYSMD4 (ENSODEG00000014842) #7	ADAMTS17 (ENSODEG00000014089) #8	CERS3 (ENSODEG00000014221) #9	ENSODEG00000014357 #10	LINS1 (ENSODEG00000015320) #11	ASB7 (ENSODEG00000014474) #12	ALDH1A3 (ENSODEG00000015012) #13	LRRK1 (ENSODEG00000014764) #14	ENSODEG00000014373 #15	ENSODEG00000014481 #16	SELENOS (ENSODEG00000014112) #17	SNRPA1 (ENSODEG00000014103) #18	PCSK6 (ENSODEG00000013651) #19	TM2D3 (ENSODEG00000014026) #20	TARS3 (ENSODEG00000014454) #21	TJP1 (ENSODEG00000015556) #22	ENTREP2 (ENSODEG00000013447) #23	APBA2 (ENSODEG00000015323) #24	MCEE (ENSODEG00000014489) #25	ENSODEG00000013751 #26	FAN1 (ENSODEG00000013994) #27	ENSODEG00000013732 #28	ENSODEG00000014974 #29	ENSODEG00000014086 #30	ENSODEG00000013964 #31	ENSODEG00000013811 #32	OTUD7A (ENSODEG00000013975) #33	Chrna7 (ENSODEG00000013998) #34	MAGEL2 (ENSODEG00000014234) #35	ENSODEG00000013159 #36	ENSODEG00000013478 #37
Long-tailed chinchilla	MODERN SPECIES	123	ENSCLAG00000013280	MEF2A (ENSCLAG00000010314)	LYSMD4 (ENSCLAG00000008806) #7	ADAMTS17 (ENSCLAG00000011560) #8	CERS3 (ENSCLAG00000010671) #9	LINS1 (ENSCLAG00000010190) #11	ASB7 (ENSCLAG00000009854) #12	ALDH1A3 (ENSCLAG00000010903) #13	LRRK1 (ENSCLAG00000015781) #14	CHSY1 (ENSCLAG00000010522) #16	SELENOS (ENSCLAG00000014232) #17	SNRPA1 (ENSCLAG00000016402) #18	PCSK6 (ENSCLAG00000013888) #19	TM2D3 (ENSCLAG00000012439) #20	TARS3 (ENSCLAG00000016873) #21	TJP1 (ENSCLAG00000017350) #22	ENTREP2 (ENSCLAG00000012714) #23	APBA2 (ENSCLAG00000009202) #24	MCEE (ENSCLAG00000011216) #25	MPHOSPH10 (ENSCLAG00000012756) #26	FAN1 (ENSCLAG00000011069) #27	MTMR10 (ENSCLAG00000011407) #28	TRPM1 (ENSCLAG00000013295) #29	ENSCLAG00000014699	ENSCLAG00000010350 #32	ENSCLAG00000009342	ENSCLAG00000009898 #33	CHRNA7 (ENSCLAG00000010378) #34	MKRN3 (ENSCLAG00000010927)	MAGEL2 (ENSCLAG00000017742) #35	NDN (ENSCLAG00000017784)
Guinea pig	MODERN SPECIES	10	TTC23 (ENSCPOG00000003733)	LRRC28 (ENSCPOG00000007104)	MEF2A (ENSCPOG00000008716)	LYSMD4 (ENSCPOG00000035578) #7	ADAMTS17 (ENSCPOG00000009337) #8	LINS1 (ENSCPOG00000002249) #11	ASB7 (ENSCPOG00000038812) #12	ENSCPOG00000032250 #13	LRRK1 (ENSCPOG00000008329) #14	CHSY1 (ENSCPOG00000039485) #16	SELENOS (ENSCPOG00000022558) #17	SNRPA1 (ENSCPOG00000005735) #18	PCSK6 (ENSCPOG00000005722) #19	TM2D3 (ENSCPOG00000008845) #20	TARS3 (ENSCPOG00000008850) #21	TJP1 (ENSCPOG00000010928) #22	ENTREP2 (ENSCPOG00000002510) #23	APBA2 (ENSCPOG00000002505) #24	MCEE (ENSCPOG00000035430) #25	MPHOSPH10 (ENSCPOG00000013444) #26	FAN1 (ENSCPOG00000013317) #27	MTMR10 (ENSCPOG00000013322) #28	TRPM1 (ENSCPOG00000013326) #29	ENSCPOG00000030034 #32	OTUD7A (ENSCPOG00000023179) #33	CHRNA7 (ENSCPOG00000040021) #34	MAGEL2 (ENSCPOG00000035142) #35