Hystricomorpha	ANCESTRAL SPECIES	49	ENSGT00940000156376	ENSGT00940000162504	ENSGT00390000017528 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00530000064210 #10	ENSGT00390000011724 #11	ENSGT00950000182836.b.a.b #12	ENSGT00940000156989 #13	ENSGT00960000186787	ENSGT00940000156484.b #14	ENSGT00940000157923 #15	ENSGT00950000183059.b.a.b #16	ENSGT00940000155103.a.b #19	ENSGT00730000111198 #20	ENSGT00940000157060.t #21	ENSGT00940000155092.b #22	ENSGT00390000017364 #23	ENSGT00390000015553.a.a.b #24	ENSGT00940000162691	ENSGT00730000111005 #25	ENSGT00390000016158 #26	ENSGT00940000156546 #27	ENSGT00940000160590 #28	ENSGT00940000156992 #29	ENSGT00940000156766 #30	ENSGT00950000183142.a.b.a.b #31	ENSGT00390000005861 #32	ENSGT00390000004799 #33	ENSGT00940000163104 #34	ENSGT00390000018900 #35	ENSGT01030000234517.H.b #36
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000162770	ENSGT00940000156376	ENSGT00940000162504	ENSGT00390000017528 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00530000064210 #10	ENSGT00390000011724 #11	ENSGT00950000182836.b.a.b #12	ENSGT00940000156989 #13	ENSGT00940000156484.b #14	ENSGT00940000157923 #15	ENSGT00950000183059.b.a.b #16	ENSGT00940000155103.a.b #19	ENSGT00730000111198 #20	ENSGT00940000157060.t #21	ENSGT00940000155092.b #22	ENSGT00390000017364 #23	ENSGT00390000015553.a.a.b #24	ENSGT00940000162691	ENSGT00730000111005 #25	ENSGT00390000016158 #26	ENSGT00940000156546 #27	ENSGT00940000160590 #28	ENSGT00940000156992 #29	ENSGT00940000156766 #30	ENSGT00950000183142.a.b.a.b #31	ENSGT00390000005861 #32	ENSGT00390000004799 #33	ENSGT00940000163104 #34	ENSGT00390000018900 #35	ENSGT01030000234517.H.b #36
Guinea pig	MODERN SPECIES	13	ENSCPOG00000033847 #7	PACC1 (ENSCPOG00000009329) #8	PPP2R5A (ENSCPOG00000040049) #9	DTL (ENSCPOG00000014965) #10	INTS7 (ENSCPOG00000014960) #11	LPGAT1 (ENSCPOG00000011269) #12	NEK2 (ENSCPOG00000011264) #13	SLC30A1 (ENSCPOG00000013692) #14	PSEN2 (ENSCPOG00000001827) #15	PLD5 (ENSCPOG00000033411) #16	ENSCPOG00000002221 #17	ENSCPOG00000002683 #18	ENSCPOG00000034860 #19	SDCCAG8 (ENSCPOG00000015503) #20	AKT3 (ENSCPOG00000015504) #21	ZBTB18 (ENSCPOG00000035384) #22	C1orf100 (ENSCPOG00000002339) #23	ADSS2 (ENSCPOG00000002342) #24	DESI2 (ENSCPOG00000002091) #25	COX20 (ENSCPOG00000032295) #26	HNRNPU (ENSCPOG00000011887) #27	EFCAB2 (ENSCPOG00000024335) #28	KIF26B (ENSCPOG00000001048) #29	SMYD3 (ENSCPOG00000002655) #30	ENSCPOG00000013225 #31	CNST (ENSCPOG00000012012) #32	SCCPDH (ENSCPOG00000029999) #33	ENSCPOG00000036159 #34	AHCTF1 (ENSCPOG00000009216) #35	CDC42BPA (ENSCPOG00000011457) #36	COQ8A (ENSCPOG00000011445) #37
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000156376	ENSGT00940000162504	ENSGT00390000017528 #8	ENSGT01030000234620.a.b.b.b #9	ENSGT00530000064210 #10	ENSGT00390000011724 #11	ENSGT00950000182836.b.a.b #12	ENSGT00940000156989 #13	ENSGT00940000156484.b #14	ENSGT00940000157923 #15	ENSGT00950000183059.b.a.b #16	ENSGT00660000097201 #17	ENSGT00940000155103.a.b #19	ENSGT00730000111198 #20	ENSGT00940000157060.t #21	ENSGT00940000155092.b #22	ENSGT00390000017364 #23	ENSGT00390000015553.a.a.b #24	ENSGT00940000162691	ENSGT00730000111005 #25	ENSGT00390000016158 #26	ENSGT00940000156546 #27	ENSGT00940000160590 #28	ENSGT00940000156992 #29	ENSGT00940000156766 #30	ENSGT00950000183142.a.b.a.b #31	ENSGT00390000005861 #32	ENSGT00390000004799 #33	ENSGT00940000163104 #34	ENSGT00390000018900 #35	ENSGT01030000234517.H.b #36
Long-tailed chinchilla	MODERN SPECIES	113	ATF3 (ENSCLAG00000013767)	ENSCLAG00000007912 #7	PACC1 (ENSCLAG00000009570) #8	PPP2R5A (ENSCLAG00000012816) #9	DTL (ENSCLAG00000014236) #10	INTS7 (ENSCLAG00000011748) #11	LPGAT1 (ENSCLAG00000011509) #12	NEK2 (ENSCLAG00000010880) #13	SLC30A1 (ENSCLAG00000009695) #14	PSEN2 (ENSCLAG00000013788) #15	PLD5 (ENSCLAG00000014400) #16	ENSCLAG00000010377	CEP170 (ENSCLAG00000015564) #19	SDCCAG8 (ENSCLAG00000011676) #20	ENSCLAG00000009649 #21	ZBTB18 (ENSCLAG00000015788) #22	C1orf100 (ENSCLAG00000007599) #23	ADSS2 (ENSCLAG00000008748) #24	CATSPERE (ENSCLAG00000009169)	DESI2 (ENSCLAG00000011829) #25	HNRNPU (ENSCLAG00000007100) #27	ENSCLAG00000007770 #26	EFCAB2 (ENSCLAG00000008343) #28	KIF26B (ENSCLAG00000012108) #29	SMYD3 (ENSCLAG00000010031) #30	TFB2M (ENSCLAG00000008614) #31	CNST (ENSCLAG00000008046) #32	SCCPDH (ENSCLAG00000009869) #33	ENSCLAG00000014434 #34	AHCTF1 (ENSCLAG00000007804) #35	CDC42BPA (ENSCLAG00000012875) #36
Degu	MODERN SPECIES	58	INTS7 (ENSODEG00000013809) #11	LPGAT1 (ENSODEG00000013429) #12	ENSODEG00000014021 #13	ENSODEG00000013939	SLC30A1 (ENSODEG00000014581) #14	PSEN2 (ENSODEG00000013898) #15	PLD5 (ENSODEG00000013817) #16	ENSODEG00000014152 #17	ENSODEG00000014979	ENSODEG00000013620 #19	ENSODEG00000016144 #19	ENSODEG00000014847 #19	SDCCAG8 (ENSODEG00000013437) #20	ENSODEG00000013767	AKT3 (ENSODEG00000013255) #21	ZBTB18 (ENSODEG00000014080) #22	C1orf100 (ENSODEG00000012902) #23	ADSS2 (ENSODEG00000015411) #24	ENSODEG00000013295 #25	ENSODEG00000013410	ENSODEG00000013336 #26	ENSODEG00000014458 #27	ENSODEG00000014016	ENSODEG00000014131	EFCAB2 (ENSODEG00000013516) #28	KIF26B (ENSODEG00000013218) #29	SMYD3 (ENSODEG00000012912) #30	ENSODEG00000013735 #31	ENSODEG00000020123	CNST (ENSODEG00000013290) #32	SCCPDH (ENSODEG00000013300) #33
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000028910	ENSHGLG00000037874 #14	ENSHGLG00000005464 #15	ENSHGLG00000032112	MAP1LC3C (ENSHGLG00000037027)	ENSHGLG00000004656 #16	ENSHGLG00000040176	ENSHGLG00000006833	ENSHGLG00000043505	ENSHGLG00000011191	ENSHGLG00000006465 #19	ENSHGLG00000038674 #19	ENSHGLG00000004271 #20	AKT3 (ENSHGLG00000006424) #21	ENSHGLG00000043051	ZBTB18 (ENSHGLG00000003880) #22	ADSS (ENSHGLG00000007672) #24	ENSHGLG00000009917 #23	ENSHGLG00000041745	ENSHGLG00000035202 #25	ENSHGLG00000015935	ENSHGLG00000043796	COX20 (ENSHGLG00000015836) #26	ENSHGLG00000010594 #27	ENSHGLG00000042794	ENSHGLG00000034325 #28	ENSHGLG00000015928 #29	ENSHGLG00000044814	ENSHGLG00000020542	ENSHGLG00000040776	ENSHGLG00000015190 #30