Tetrapoda	ANCESTRAL SPECIES		ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030 #16	ENSGT00960000186941 #15	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Amniota	ANCESTRAL SPECIES		ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT01020000230360.c.b.b	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Mammalia	ANCESTRAL SPECIES		ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT01020000230360.c.b.b	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Theria	ANCESTRAL SPECIES	1	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Eutheria	ANCESTRAL SPECIES	17	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Primates	ANCESTRAL SPECIES	14	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Haplorrhini	ANCESTRAL SPECIES	37	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Hominoidea	ANCESTRAL SPECIES	30	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00910000148121 #24	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Gibbon	MODERN SPECIES	4	REV1 (ENSNLEG00000014240) #7	AFF3 (ENSNLEG00000014317) #8	LONRF2 (ENSNLEG00000014343) #9	CHST10 (ENSNLEG00000014368) #10	ENSNLEG00000034460 #11	NMS (ENSNLEG00000014380) #12	ENSNLEG00000014393 #13	NPAS2 (ENSNLEG00000014404) #14	ENSNLEG00000028663 #15	ENSNLEG00000014444 #16	TBC1D8 (ENSNLEG00000014456) #17	CNOT11 (ENSNLEG00000014472) #18	RNF149 (ENSNLEG00000014483) #19	ENSNLEG00000030602 #20	RFX8 (ENSNLEG00000014506) #21	MAP4K4 (ENSNLEG00000014520) #22	IL1R2 (ENSNLEG00000014582) #23	ENSNLEG00000031543 #24	IL1R1 (ENSNLEG00000014597) #25	IL1RL2 (ENSNLEG00000014624) #26	ENSNLEG00000014642 #27	IL18R1 (ENSNLEG00000014646) #28	IL18RAP (ENSNLEG00000014668) #29	SLC9A4 (ENSNLEG00000014687) #30	SLC9A2 (ENSNLEG00000014699) #31	MFSD9 (ENSNLEG00000014709) #32	TMEM182 (ENSNLEG00000014717) #33	ENSNLEG00000029090 #34	MRPS9 (ENSNLEG00000032880) #35	GPR45 (ENSNLEG00000019198) #36	TGFBRAP1 (ENSNLEG00000010552) #37
Hominidae	ANCESTRAL SPECIES	28	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00910000148121 #24	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	29	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00910000148121 #24	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Gorilla	MODERN SPECIES	14	REV1 (ENSGGOG00000001728) #7	AFF3 (ENSGGOG00000034914) #8	LONRF2 (ENSGGOG00000004914) #9	CHST10 (ENSGGOG00000011750) #10	ENSGGOG00000026122 #11	NMS (ENSGGOG00000022806) #12	ENSGGOG00000022048	PDCL3 (ENSGGOG00000036387) #13	NPAS2 (ENSGGOG00000006420) #14	RPL31 (ENSGGOG00000006432) #16	TBC1D8 (ENSGGOG00000005459) #17	CNOT11 (ENSGGOG00000005070) #18	RNF149 (ENSGGOG00000016958) #19	ENSGGOG00000041750	RFX8 (ENSGGOG00000011918) #21	MAP4K4 (ENSGGOG00000010831) #22	IL1R2 (ENSGGOG00000011488) #23	IL1R1 (ENSGGOG00000003344) #25	IL1RL2 (ENSGGOG00000003351) #26	IL1RL1 (ENSGGOG00000016653) #27	IL18R1 (ENSGGOG00000012879) #28	IL18RAP (ENSGGOG00000005842) #29	SLC9A4 (ENSGGOG00000014583) #30	SLC9A2 (ENSGGOG00000016491) #31	MFSD9 (ENSGGOG00000037798) #32	TMEM182 (ENSGGOG00000037042) #33	ENSGGOG00000043897	MRPS9 (ENSGGOG00000007751) #35	GPR45 (ENSGGOG00000012122) #36	TGFBRAP1 (ENSGGOG00000008221) #37	C2orf49 (ENSGGOG00000023363)
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00390000015645.q	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00910000148121 #24	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Pan	ANCESTRAL SPECIES	33	ENSGT00390000015645.q	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.e #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00910000148121 #24	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000153469.a.b.h	ENSGT00940000153299.c.a.a.a.b.d #34	ENSGT00940000163665	ENSGT00900000143808
Bonobo	MODERN SPECIES	14	REV1 (ENSPPAG00000031053) #7	AFF3 (ENSPPAG00000032057) #8	ENSPPAG00000039170 #9	CHST10 (ENSPPAG00000039194) #10	NMS (ENSPPAG00000037891) #12	ENSPPAG00000028037	ENSPPAG00000039690 #13	ENSPPAG00000028745	NPAS2 (ENSPPAG00000032228) #14	ENSPPAG00000026810 #16	TBC1D8 (ENSPPAG00000031495) #17	CNOT11 (ENSPPAG00000033121) #18	ENSPPAG00000043974 #19	CREG2 (ENSPPAG00000044090)	RFX8 (ENSPPAG00000041329) #21	MAP4K4 (ENSPPAG00000036630) #22	IL1R2 (ENSPPAG00000028877) #23	ENSPPAG00000011663 #24	IL1R1 (ENSPPAG00000039338) #25	IL1RL2 (ENSPPAG00000031254) #26	ENSPPAG00000036065 #28	IL18RAP (ENSPPAG00000029352) #29	SLC9A4 (ENSPPAG00000033960) #30	SLC9A2 (ENSPPAG00000035825) #31	MFSD9 (ENSPPAG00000038884) #32	TMEM182 (ENSPPAG00000038490) #33	ENSPPAG00000008281	ENSPPAG00000035137 #34	MRPS9 (ENSPPAG00000037429) #35	ENSPPAG00000043229	GPR45 (ENSPPAG00000006372) #36
Chimpanzee	MODERN SPECIES	14	EIF5B (ENSPTRG00000012279)	REV1 (ENSPTRG00000012280) #7	AFF3 (ENSPTRG00000012281) #8	LONRF2 (ENSPTRG00000012282) #9	CHST10 (ENSPTRG00000012284) #10	NMS (ENSPTRG00000030401) #12	ENSPTRG00000044029	ENSPTRG00000047153 #13	NPAS2 (ENSPTRG00000012287) #14	ENSPTRG00000050218 #16	TBC1D8 (ENSPTRG00000030399) #17	CNOT11 (ENSPTRG00000012290) #18	RNF149 (ENSPTRG00000012291) #19	CREG2 (ENSPTRG00000012292)	RFX8 (ENSPTRG00000012293) #21	MAP4K4 (ENSPTRG00000012294) #22	IL1R2 (ENSPTRG00000012297) #23	ENSPTRG00000050348 #24	IL1R1 (ENSPTRG00000012299) #25	IL1RL2 (ENSPTRG00000012300) #26	ENSPTRG00000044716 #27	IL18R1 (ENSPTRG00000012302) #28	IL18RAP (ENSPTRG00000012303) #29	SLC9A4 (ENSPTRG00000012304) #30	SLC9A2 (ENSPTRG00000012305) #31	MFSD9 (ENSPTRG00000012307) #32	TMEM182 (ENSPTRG00000012308) #33	ENSPTRG00000046259	ENSPTRG00000052656 #34	POU3F3 (ENSPTRG00000030398)	ENSPTRG00000052249
Human	MODERN SPECIES	11	TXNDC9 (ENSG00000115514)	EIF5B (ENSG00000158417)	REV1 (ENSG00000135945) #7	AFF3 (ENSG00000144218) #8	LONRF2 (ENSG00000170500) #9	CHST10 (ENSG00000115526) #10	NMS (ENSG00000204640) #12	PDCL3 (ENSG00000115539) #13	NPAS2 (ENSG00000170485) #14	RPL31 (ENSG00000071082) ##16	TBC1D8 (ENSG00000204634) #17	CNOT11 (ENSG00000158435) #18	RNF149 (ENSG00000163162) #19	CREG2 (ENSG00000175874)	RFX8 (ENSG00000196460) #21	MAP4K4 (ENSG00000071054) #22	IL1R2 (ENSG00000115590) #23	IL1R1 (ENSG00000115594) #25	IL1RL2 (ENSG00000115598) #26	IL1RL1 (ENSG00000115602) #27	IL18R1 (ENSG00000115604) #28	IL18RAP (ENSG00000115607) #29	SLC9A4 (ENSG00000180251) #30	SLC9A2 (ENSG00000115616) #31	MFSD9 (ENSG00000135953) #32	TMEM182 (ENSG00000170417) #33	POU3F3 (ENSG00000198914)	MRPS9 (ENSG00000135972) #35	GPR45 (ENSG00000135973) #36	TGFBRAP1 (ENSG00000135966) #37	C2orf49 (ENSG00000135974)
Orangutan	MODERN SPECIES	14	ENSPPYG00000035486	TXNDC9 (ENSPPYG00000036699)	EIF5B (ENSPPYG00000012094)	REV1 (ENSPPYG00000012095) #7	AFF3 (ENSPPYG00000012096) #8	LONRF2 (ENSPPYG00000012097) #9	CHST10 (ENSPPYG00000012098) #10	NMS (ENSPPYG00000012099) #12	ENSPPYG00000006487	PDCL3 (ENSPPYG00000012100) #13	NPAS2 (ENSPPYG00000012101) #14	RPL31 (ENSPPYG00000025870) #16	TBC1D8 (ENSPPYG00000012102) #17	CNOT11 (ENSPPYG00000012103) #18	ENSPPYG00000012104 #19	MAP4K4 (ENSPPYG00000012107) #22	IL1R2 (ENSPPYG00000012108) #23	IL1R1 (ENSPPYG00000012109) #25	IL1RL2 (ENSPPYG00000012110) #26	IL1RL1 (ENSPPYG00000012111) #27	IL18R1 (ENSPPYG00000012112) #28	IL18RAP (ENSPPYG00000012113) #29	SLC9A4 (ENSPPYG00000012114) #30	SLC9A2 (ENSPPYG00000012115) #31	MFSD9 (ENSPPYG00000038484) #32	ENSPPYG00000034423	TMEM182 (ENSPPYG00000032935) #33	ENSPPYG00000039806	POU3F3 (ENSPPYG00000012118)	MRPS9 (ENSPPYG00000012119) #35	GPR45 (ENSPPYG00000012120) #36
Cercopithecidae	ANCESTRAL SPECIES	32	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT00940000154172.gb.b.a.d	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00390000018085.a.a.b.f.b.b	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000154172.gb.b.a.d	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000153112.D.n.a.a.b.b	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Macaca	ANCESTRAL SPECIES	28	ENSGT00390000018085.a.a.b.f.b.b	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b.c #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000154172.gb.b.a.d	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000153112.D.n.a.a.b.b	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b.c #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00980000202165.D	ENSGT00940000155063 #22	ENSGT00940000154172.gb.b.a.d	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Crab-eating macaque	MODERN SPECIES	4	ENSMFAG00000030155	AFF3 (ENSMFAG00000031640) #8	ENSMFAG00000057183	LONRF2 (ENSMFAG00000041273) #9	CHST10 (ENSMFAG00000043113) #10	NMS (ENSMFAG00000035510) #12	ENSMFAG00000002115 #13	NPAS2 (ENSMFAG00000001513) #14	ENSMFAG00000044593 #16	TBC1D8 (ENSMFAG00000004006) #17	CNOT11 (ENSMFAG00000044449) #18	RNF149 (ENSMFAG00000038019) #19	CREG2 (ENSMFAG00000043737)	RFX8 (ENSMFAG00000034469) #21	ENSMFAG00000052713	MAP4K4 (ENSMFAG00000030642) #22	ENSMFAG00000015955	IL1R2 (ENSMFAG00000046196) #23	IL1R1 (ENSMFAG00000034258) #25	IL1RL2 (ENSMFAG00000046248) #26	IL1RL1 (ENSMFAG00000007059) #27	IL18R1 (ENSMFAG00000032671) #28	IL18RAP (ENSMFAG00000043038) #29	SLC9A4 (ENSMFAG00000044816) #30	SLC9A2 (ENSMFAG00000045336) #31	MFSD9 (ENSMFAG00000042016) #32	TMEM182 (ENSMFAG00000036897) #33	ENSMFAG00000060850	ENSMFAG00000057295	ENSMFAG00000048377	ENSMFAG00000055851
Rhesus	MODERN SPECIES	4	LONRF2 (ENSMMUG00000017455) #9	CHST10 (ENSMMUG00000021645) #10	NMS (ENSMMUG00000030707) #12	ENSMMUG00000040135 #13	ENSMMUG00000056832	ENSMMUG00000063225	ENSMMUG00000052525	NPAS2 (ENSMMUG00000009871) #14	RPL31 (ENSMMUG00000009873) #16	TBC1D8 (ENSMMUG00000009874) #17	CNOT11 (ENSMMUG00000001147) #18	RNF149 (ENSMMUG00000057257) #19	CREG2 (ENSMMUG00000017356)	RFX8 (ENSMMUG00000030702) #21	ENSMMUG00000059197	MAP4K4 (ENSMMUG00000010811) #22	IL1R2 (ENSMMUG00000020739) #23	IL1R1 (ENSMMUG00000020737) #25	IL1RL2 (ENSMMUG00000016533) #26	IL1RL1 (ENSMMUG00000009238) #27	IL18R1 (ENSMMUG00000009244) #28	IL18RAP (ENSMMUG00000009246) #29	SLC9A4 (ENSMMUG00000004164) #30	SLC9A2 (ENSMMUG00000004165) #31	MFSD9 (ENSMMUG00000043149) #32	TMEM182 (ENSMMUG00000004169) #33	ENSMMUG00000050800	ENSMMUG00000064102	ENSMMUG00000062978	MRPS9 (ENSMMUG00000019682) #35	TGFBRAP1 (ENSMMUG00000015789) #37
Pig-tailed macaque	MODERN SPECIES	165	REV1 (ENSMNEG00000033432) #7	ENSMNEG00000026095	AFF3 (ENSMNEG00000031770) #8	LONRF2 (ENSMNEG00000039849) #9	CHST10 (ENSMNEG00000043033) #10	ENSMNEG00000036571 #11	NMS (ENSMNEG00000038064) #12	ENSMNEG00000035390 #13	NPAS2 (ENSMNEG00000034450) #14	ENSMNEG00000042370 #16	TBC1D8 (ENSMNEG00000006766) #17	CNOT11 (ENSMNEG00000044355) #18	RNF149 (ENSMNEG00000044718) #19	CREG2 (ENSMNEG00000032081)	RFX8 (ENSMNEG00000035104) #21	MAP4K4 (ENSMNEG00000033335) #22	ENSMNEG00000018515	IL1R2 (ENSMNEG00000035660) #23	IL1R1 (ENSMNEG00000029507) #25	IL1RL2 (ENSMNEG00000031150) #26	ENSMNEG00000033211 #27	IL18R1 (ENSMNEG00000042412) #28	IL18RAP (ENSMNEG00000037581) #29	SLC9A4 (ENSMNEG00000043901) #30	SLC9A2 (ENSMNEG00000044315) #31	MFSD9 (ENSMNEG00000029233) #32	TMEM182 (ENSMNEG00000000448) #33	ENSMNEG00000043182	ENSMNEG00000013615	MRPS9 (ENSMNEG00000034038) #35	GPR45 (ENSMNEG00000008661) #36
Cercopithecinae_b	ANCESTRAL SPECIES	40	ENSGT00390000018085.a.a.b.f.b.b	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000154172.gb.b.a.d	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000153112.D.n.a.a.b.b	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Olive baboon	MODERN SPECIES	5	NMS (ENSPANG00000024717) #12	ENSPANG00000049213	ENSPANG00000007110 #13	NPAS2 (ENSPANG00000000546) #14	ENSPANG00000031625 #16	TBC1D8 (ENSPANG00000022369) #17	ENSPANG00000050706	CNOT11 (ENSPANG00000023665) #18	RNF149 (ENSPANG00000024716) #19	CREG2 (ENSPANG00000008057)	RFX8 (ENSPANG00000008935) #21	ENSPANG00000019556	ENSPANG00000041623	ENSPANG00000046709	ENSPANG00000033346	MAP4K4 (ENSPANG00000016468) #22	IL1R2 (ENSPANG00000008628) #23	IL1R1 (ENSPANG00000008056) #25	IL1RL2 (ENSPANG00000016467) #26	IL1RL1 (ENSPANG00000008055) #27	IL18R1 (ENSPANG00000025952) #28	IL18RAP (ENSPANG00000007109) #29	SLC9A4 (ENSPANG00000019901) #30	SLC9A2 (ENSPANG00000024442) #31	MFSD9 (ENSPANG00000022366) #32	TMEM182 (ENSPANG00000040836) #33	ENSPANG00000051105	ENSPANG00000041304	POU3F3 (ENSPANG00000048187)	MRPS9 (ENSPANG00000012691) #35	GPR45 (ENSPANG00000048238) #36
Cercopithecinae_d	ANCESTRAL SPECIES	74	ENSGT00390000018085.a.a.b.f.b.b	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000154639.n.b #11	ENSGT00510000049213 #12	ENSGT00940000154295.y.b.a.b #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000154172.gb.b.a.d	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000153112.D.n.a.a.b.b	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36
Sooty mangabey	MODERN SPECIES	622	ENSCATG00000040341	AFF3 (ENSCATG00000045196) #8	LONRF2 (ENSCATG00000030877) #9	CHST10 (ENSCATG00000036687) #10	ENSCATG00000045280 #11	NMS (ENSCATG00000029654) #12	ENSCATG00000030865 #13	NPAS2 (ENSCATG00000031061) #14	ENSCATG00000032919 #16	TBC1D8 (ENSCATG00000040426) #17	CNOT11 (ENSCATG00000040259) #18	RNF149 (ENSCATG00000032784) #19	CREG2 (ENSCATG00000042933)	RFX8 (ENSCATG00000034271) #21	ENSCATG00000014556	MAP4K4 (ENSCATG00000043377) #22	IL1R2 (ENSCATG00000045357) #23	IL1R1 (ENSCATG00000044046) #25	IL1RL2 (ENSCATG00000044212) #26	IL1RL1 (ENSCATG00000033298) #27	IL18R1 (ENSCATG00000032165) #28	IL18RAP (ENSCATG00000041182) #29	SLC9A4 (ENSCATG00000034216) #30	SLC9A2 (ENSCATG00000037196) #31	MFSD9 (ENSCATG00000031408) #32	TMEM182 (ENSCATG00000034912) #33	ENSCATG00000042784	POU3F3 (ENSCATG00000043149)	ENSCATG00000005418	MRPS9 (ENSCATG00000036678) #35	TGFBRAP1 (ENSCATG00000031570) #37
Drill	MODERN SPECIES	1637	EIF5B (ENSMLEG00000031596)	REV1 (ENSMLEG00000037720) #7	ENSMLEG00000015560	AFF3 (ENSMLEG00000041792) #8	LONRF2 (ENSMLEG00000042790) #9	CHST10 (ENSMLEG00000043847) #10	ENSMLEG00000031002 #11	NMS (ENSMLEG00000043331) #12	ENSMLEG00000026784 #13	NPAS2 (ENSMLEG00000029966) #14	ENSMLEG00000037903 #16	TBC1D8 (ENSMLEG00000031021) #17	CNOT11 (ENSMLEG00000024913) #18	ENSMLEG00000043708 #19	RFX8 (ENSMLEG00000035011) #21	MAP4K4 (ENSMLEG00000042100) #22	IL1R2 (ENSMLEG00000041212) #23	IL1R1 (ENSMLEG00000032449) #25	IL1RL2 (ENSMLEG00000044151) #26	IL1RL1 (ENSMLEG00000025624) #27	IL18R1 (ENSMLEG00000028670) #28	IL18RAP (ENSMLEG00000032358) #29	SLC9A4 (ENSMLEG00000014766) #30	SLC9A2 (ENSMLEG00000042952) #31	MFSD9 (ENSMLEG00000009199) #32	TMEM182 (ENSMLEG00000039255) #33	ENSMLEG00000029682	ENSMLEG00000034061 ##34	ENSMLEG00000027413	MRPS9 (ENSMLEG00000042789) #35	GPR45 (ENSMLEG00000026836) #36
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	28	BMI1 (ENSCSAG00000012472)	SPAG6 (ENSCSAG00000012459)	PIP4K2A (ENSCSAG00000012448)	ARMC3 (ENSCSAG00000012440)	MSRB2 (ENSCSAG00000012427)	PTF1A (ENSCSAG00000012422)	ENSCSAG00000012415	ENSCSAG00000012408	OTUD1 (ENSCSAG00000019058)	KIAA1217 (ENSCSAG00000012397)	ARHGAP21 (ENSCSAG00000012325)	PRTFDC1 (ENSCSAG00000012165)	ENKUR (ENSCSAG00000012159)	THNSL1 (ENSCSAG00000019059)	GPR158 (ENSCSAG00000012152)	ENSCSAG00000012143 #22	GAD2 (ENSCSAG00000012130)	APBB1IP (ENSCSAG00000012106)	PDSS1 (ENSCSAG00000012067)	ABI1 (ENSCSAG00000011992)	ANKRD26 (ENSCSAG00000011974)	YME1L1 (ENSCSAG00000011924)	MASTL (ENSCSAG00000011793)	ACBD5 (ENSCSAG00000011784)	ENSCSAG00000011771	PTCHD3 (ENSCSAG00000011759)	RAB18 (ENSCSAG00000011749)	MKX (ENSCSAG00000011743)	ODAD2 (ENSCSAG00000011739)	MPP7 (ENSCSAG00000011728)	ENSCSAG00000019060
Vervet Monkey	MODERN SPECIES	5	LYG2 (ENSCSAG00000017216)	LYG1 (ENSCSAG00000017213)	TXNDC9 (ENSCSAG00000017212)	EIF5B (ENSCSAG00000017209)	REV1 (ENSCSAG00000017200) #7	AFF3 (ENSCSAG00000017193) #8	LONRF2 (ENSCSAG00000017190) #9	CHST10 (ENSCSAG00000017188) #10	ENSCSAG00000017183 #13	NPAS2 (ENSCSAG00000017176) #14	TBC1D8 (ENSCSAG00000017170) #17	CNOT11 (ENSCSAG00000017167) #18	RNF149 (ENSCSAG00000017163) #19	CREG2 (ENSCSAG00000017159)	RFX8 (ENSCSAG00000017155) #21	MAP4K4 (ENSCSAG00000017152) #22	ENSCSAG00000019428	IL1R2 (ENSCSAG00000017148) #23	ENSCSAG00000017144	IL1R1 (ENSCSAG00000017139) #25	IL1RL2 (ENSCSAG00000017133) #26	IL1RL1 (ENSCSAG00000017123) #27	IL18R1 (ENSCSAG00000017115) #28	IL18RAP (ENSCSAG00000017102) #29	SLC9A4 (ENSCSAG00000017094) #30	SLC9A2 (ENSCSAG00000017090) #31	MFSD9 (ENSCSAG00000017085) #32	TMEM182 (ENSCSAG00000017082) #33	POU3F3 (ENSCSAG00000019429)	MRPS9 (ENSCSAG00000017079) #35	GPR45 (ENSCSAG00000019430) #36
Rhinopithecus	ANCESTRAL SPECIES	411														ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33
Black snub-nosed monkey	MODERN SPECIES	2646														CREG2 (ENSRBIG00000032744)	RFX8 (ENSRBIG00000007111) #21	MAP4K4 (ENSRBIG00000044779) #22	IL1R2 (ENSRBIG00000042181) #23	IL1R1 (ENSRBIG00000028664) #25	IL1RL2 (ENSRBIG00000027663) #26	IL1RL1 (ENSRBIG00000038752) #27	IL18R1 (ENSRBIG00000043441) #28	IL18RAP (ENSRBIG00000031699) #29	SLC9A4 (ENSRBIG00000038959) #30	SLC9A2 (ENSRBIG00000040297) #31	MFSD9 (ENSRBIG00000033002) #32	ENSRBIG00000044903	TMEM182 (ENSRBIG00000010759) #33
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2114																ENSRROG00000037881 #22
Golden snub-nosed monkey	MODERN SPECIES	2565														CREG2 (ENSRROG00000039186)	RFX8 (ENSRROG00000039867) #21	MAP4K4 (ENSRROG00000033881) #22	IL1R2 (ENSRROG00000023010) #23	IL1R1 (ENSRROG00000030047) #25	IL1RL2 (ENSRROG00000042537) #26
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.a.a.a.b ##13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00940000155009.k.a.b	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204.k #35	ENSGT00950000183001.a.b.b #36
Mas night monkey	MODERN SPECIES	965																MAP4K4 (ENSANAG00000029019) #22	IL1R2 (ENSANAG00000026683) #23	IL1R1 (ENSANAG00000025197) #25	IL1RL2 (ENSANAG00000033128) #26	IL1RL1 (ENSANAG00000031316) #27	ENSANAG00000022666	IL18R1 (ENSANAG00000006111) #28	IL18RAP (ENSANAG00000031820) #29	SLC9A4 (ENSANAG00000035161) #30	SLC9A2 (ENSANAG00000028201) #31	MFSD9 (ENSANAG00000026384) #32	TMEM182 (ENSANAG00000025324) #33	POU3F3 (ENSANAG00000030311)	ENSANAG00000032107	ENSANAG00000021821 #35	GPR45 (ENSANAG00000011996) #36
Cebidae	ANCESTRAL SPECIES	15	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.a.a.a.b ##13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00940000155009.k.a.b	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.k #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Marmoset	MODERN SPECIES	5	ENSCJAG00000010160 ##13	NPAS2 (ENSCJAG00000021202) #14	ENSCJAG00000021214 #16	TBC1D8 (ENSCJAG00000021215) #17	ENSCJAG00000074572	ENSCJAG00000070276	ENSCJAG00000074398	ENSCJAG00000075433	ENSCJAG00000042067	CNOT11 (ENSCJAG00000021229) #18	RNF149 (ENSCJAG00000021239) #19	CREG2 (ENSCJAG00000065818)	ENSCJAG00000045393	ENSCJAG00000056655	ENSCJAG00000072007	MAP4K4 (ENSCJAG00000008424) #22	IL1R2 (ENSCJAG00000008399) #23	IL1R1 (ENSCJAG00000008354) #25	IL1RL2 (ENSCJAG00000008327) #26	ENSCJAG00000022737	IL1RL1 (ENSCJAG00000008308) #27	IL18R1 (ENSCJAG00000008271) #28	IL18RAP (ENSCJAG00000008255) #29	ENSCJAG00000085169	SLC9A4 (ENSCJAG00000008163) #30	SLC9A2 (ENSCJAG00000008193) #31	MFSD9 (ENSCJAG00000069979) #32	TMEM182 (ENSCJAG00000043937) #33	POU3F3 (ENSCJAG00000046410)	ENSCJAG00000008156 #35	GPR45 (ENSCJAG00000022736) #36
Cebidae_a	ANCESTRAL SPECIES	56	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.y.a.a.a.b ##13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00940000155009.k.a.b	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.k #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Bolivian squirrel monkey	MODERN SPECIES	137								NPAS2 (ENSSBOG00000032277) #14	ENSSBOG00000022106 #16	TBC1D8 (ENSSBOG00000027309) #17	ENSSBOG00000031710	CNOT11 (ENSSBOG00000030189) #18	RNF149 (ENSSBOG00000030607) #19	CREG2 (ENSSBOG00000022650)	RFX8 (ENSSBOG00000019961) #21	MAP4K4 (ENSSBOG00000028082) #22	ENSSBOG00000026816	HSBP1 (ENSSBOG00000027265)	CDH13 (ENSSBOG00000019920)	ENSSBOG00000031580	HSD17B2 (ENSSBOG00000033511)	SDR42E1 (ENSSBOG00000034896)	PLCG2 (ENSSBOG00000026469)	CMIP (ENSSBOG00000003467)	GAN (ENSSBOG00000024113)	BCO1 (ENSSBOG00000014568)	ENSSBOG00000023334	ENSSBOG00000028280	C16orf46 (ENSSBOG00000029905)	ENSSBOG00000020729	ENSSBOG00000023971
Capuchin	MODERN SPECIES	202				ENSCCAG00000026041	CHST10 (ENSCCAG00000022449) #10	NMS (ENSCCAG00000033337) #12	ENSCCAG00000033398 ##13	NPAS2 (ENSCCAG00000031914) #14	ENSCCAG00000032563 ##16	TBC1D8 (ENSCCAG00000034002) #17	CNOT11 (ENSCCAG00000027582) #18	RNF149 (ENSCCAG00000032377) #19	CREG2 (ENSCCAG00000034118)	RFX8 (ENSCCAG00000029305) #21	ENSCCAG00000031258	MAP4K4 (ENSCCAG00000021331) #22	IL1R2 (ENSCCAG00000033665) #23	IL1R1 (ENSCCAG00000038037) #25	IL1RL2 (ENSCCAG00000023016) #26	ENSCCAG00000026403	IL1RL1 (ENSCCAG00000034801) #27	IL18R1 (ENSCCAG00000022289) #28	ENSCCAG00000030854	IL18RAP (ENSCCAG00000030449) #29	SLC9A4 (ENSCCAG00000020485) #30	SLC9A2 (ENSCCAG00000024071) #31	MFSD9 (ENSCCAG00000035445) #32	TMEM182 (ENSCCAG00000028079) #33
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6466																ENSTSYG00000027366 #22
Tarsier	MODERN SPECIES	3872														SMAD4 (ENSTSYG00000009792)	ELAC1 (ENSTSYG00000005985)	MAP4K4 (ENSTSYG00000005595) #22
Strepsirrhini	ANCESTRAL SPECIES	31	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.a.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Lemuriformes	ANCESTRAL SPECIES	67								ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Lemuriformes_a	ANCESTRAL SPECIES	120								ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Coquerels sifaka	MODERN SPECIES	239	AFF3 (ENSPCOG00000016986) #8	ENSPCOG00000018157	LONRF2 (ENSPCOG00000018384) #9	PDCL3 (ENSPCOG00000003954) #13	NMS (ENSPCOG00000028498) #12	ENSPCOG00000023177	CHST10 (ENSPCOG00000027742) #10	NPAS2 (ENSPCOG00000000049) #14	ENSPCOG00000024743 #16	ENSPCOG00000020653 #15	TBC1D8 (ENSPCOG00000009380) #17	CNOT11 (ENSPCOG00000022088) #18	RNF149 (ENSPCOG00000028249) #19	CREG2 (ENSPCOG00000023419)	RFX8 (ENSPCOG00000022314) #21	MAP4K4 (ENSPCOG00000028151) #22	IL1R2 (ENSPCOG00000014947) #23	IL1R1 (ENSPCOG00000005325) #25	IL1RL2 (ENSPCOG00000028343) #26	ENSPCOG00000027167 #27	IL18R1 (ENSPCOG00000028294) #28	IL18RAP (ENSPCOG00000012338) #29	SLC9A4 (ENSPCOG00000021248) #30	SLC9A2 (ENSPCOG00000026413) #31	MFSD9 (ENSPCOG00000023969) #32	TMEM182 (ENSPCOG00000025137) #33
Greater bamboo lemur	MODERN SPECIES	219								RNF149 (ENSPSMG00000019224) #19	CNOT11 (ENSPSMG00000019228) #18	TBC1D8 (ENSPSMG00000019245) #17	ENSPSMG00000019253 #16	NPAS2 (ENSPSMG00000019292) #14	CREG2 (ENSPSMG00000019322)	RFX8 (ENSPSMG00000019345) #21	ENSPSMG00000019353 ##16	MAP4K4 (ENSPSMG00000020613) #22	ENSPSMG00000021369	IL1R2 (ENSPSMG00000021380) #23	ENSPSMG00000021388	IL1R1 (ENSPSMG00000021470) #25	IL1RL2 (ENSPSMG00000021495) #26	ENSPSMG00000021498 #27	IL18R1 (ENSPSMG00000021512) #28	IL18RAP (ENSPSMG00000021526) #29	SLC9A4 (ENSPSMG00000021533) #30	SLC9A2 (ENSPSMG00000021553) #31	MFSD9 (ENSPSMG00000021569) #32	TMEM182 (ENSPSMG00000021578) #33	TSPYL6 (ENSPSMG00000021607)	POU3F3 (ENSPSMG00000021610)	MRPS9 (ENSPSMG00000021628) #35
Mouse lemur	MODERN SPECIES	26	ENSMICG00000015951	EIF5B (ENSMICG00000015960)	REV1 (ENSMICG00000015977) #7	AFF3 (ENSMICG00000016001) #8	LONRF2 (ENSMICG00000000058) #9	ENSMICG00000000657 #13	NMS (ENSMICG00000000057) #12	CHST10 (ENSMICG00000028158) #10	NPAS2 (ENSMICG00000016027) #14	ENSMICG00000016059 #16	TBC1D8 (ENSMICG00000046616) #17	CNOT11 (ENSMICG00000002973) #18	RNF149 (ENSMICG00000034230) #19	CREG2 (ENSMICG00000037594)	RFX8 (ENSMICG00000035914) #21	MAP4K4 (ENSMICG00000003905) #22	IL1R2 (ENSMICG00000003917) #23	IL1R1 (ENSMICG00000047136) #25	IL1RL2 (ENSMICG00000043351) #26	IL1RL1 (ENSMICG00000008768) #27	IL18R1 (ENSMICG00000008776) #28	IL18RAP (ENSMICG00000047921) #29	SLC9A4 (ENSMICG00000039809) #30	SLC9A2 (ENSMICG00000008821) #31	MFSD9 (ENSMICG00000037979) #32	TMEM182 (ENSMICG00000008841) #33	POU3F3 (ENSMICG00000001214)	MRPS9 (ENSMICG00000000223) #35	TGFBRAP1 (ENSMICG00000000226) #37	C2orf49 (ENSMICG00000000227)	FHL2 (ENSMICG00000000229)
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	302							BBS5 (ENSOGAG00000003717)	FASTKD1 (ENSOGAG00000003722)	PPIG (ENSOGAG00000029611)	CFAP210 (ENSOGAG00000024516)	PHOSPHO2 (ENSOGAG00000029657)	KLHL23 (ENSOGAG00000003732)	SSB (ENSOGAG00000029768)	METTL5 (ENSOGAG00000010084)	UBR3 (ENSOGAG00000028122)	ENSOGAG00000032878 #22	ENSOGAG00000024121	MYO3B (ENSOGAG00000016592)	ENSOGAG00000016611	GAD1 (ENSOGAG00000016613)	GORASP2 (ENSOGAG00000016621)	TLK1 (ENSOGAG00000016628)	ENSOGAG00000027267	METTL8 (ENSOGAG00000010921)	ENSOGAG00000010922	ENSOGAG00000027127	CYBRD1 (ENSOGAG00000000245)	DYNC1I2 (ENSOGAG00000000379)	SLC25A12 (ENSOGAG00000007381)	HAT1 (ENSOGAG00000010423)	METAP1D (ENSOGAG00000003048)
Bushbaby	MODERN SPECIES	194	REV1 (ENSOGAG00000013247) #7	AFF3 (ENSOGAG00000013262) #8	LONRF2 (ENSOGAG00000003794) #9	ENSOGAG00000027230	CHST10 (ENSOGAG00000008178) #10	NMS (ENSOGAG00000015135) #12	PDCL3 (ENSOGAG00000015138) #13	ENSOGAG00000026729	NPAS2 (ENSOGAG00000014490) #14	ENSOGAG00000014494 ##16	TBC1D8 (ENSOGAG00000014498) #17	CNOT11 (ENSOGAG00000014506) #18	RNF149 (ENSOGAG00000034221) #19	CREG2 (ENSOGAG00000003495)	RFX8 (ENSOGAG00000033445) #21	MAP4K4 (ENSOGAG00000012488) #22	IL1R2 (ENSOGAG00000012491) #23	IL1R1 (ENSOGAG00000008049) #25	IL1RL2 (ENSOGAG00000008050) #26	IL1RL1 (ENSOGAG00000025560) #27	IL18R1 (ENSOGAG00000013996) #28	IL18RAP (ENSOGAG00000014003) #29	SLC9A4 (ENSOGAG00000014009) #30	SLC9A2 (ENSOGAG00000015448) #31	MFSD9 (ENSOGAG00000015453) #32	TMEM182 (ENSOGAG00000015455) #33	ENSOGAG00000028858	POU3F3 (ENSOGAG00000028714)	ENSOGAG00000025692	MRPS9 (ENSOGAG00000007255) #35	ENSOGAG00000033950
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Tree shrew	MODERN SPECIES	3557																MAP4K4 (ENSTBEG00000012991) #22
Glires	ANCESTRAL SPECIES	13	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Lagomorpha	ANCESTRAL SPECIES	31	ENSGT00390000010868	ENSGT00390000016769	ENSGT00390000017614.i	ENSGT00390000017614.j	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Rabbit	MODERN SPECIES	11	ENSOCUG00000016129	ENSOCUG00000037238	EIF5B (ENSOCUG00000021154)	REV1 (ENSOCUG00000014576) #7	ENSOCUG00000035054	AFF3 (ENSOCUG00000009532) #8	NMS (ENSOCUG00000001463) #12	CHST10 (ENSOCUG00000012868) #10	PDCL3 (ENSOCUG00000001469) #13	NPAS2 (ENSOCUG00000002384) #14	ENSOCUG00000002392 ##16	TBC1D8 (ENSOCUG00000002398) #17	ENSOCUG00000013058 #19	ENSOCUG00000004448 #18	RFX8 (ENSOCUG00000017895) #21	MAP4K4 (ENSOCUG00000008180) #22	IL1R2 (ENSOCUG00000016746) #23	IL1R1 (ENSOCUG00000006957) #25	IL1RL2 (ENSOCUG00000029557) #26	IL1RL1 (ENSOCUG00000016462) #27	IL18R1 (ENSOCUG00000016476) #28	IL18RAP (ENSOCUG00000006067) #29	SLC9A4 (ENSOCUG00000006075) #30	SLC9A2 (ENSOCUG00000004890) #31	MFSD9 (ENSOCUG00000017011) #32	TMEM182 (ENSOCUG00000017004) #33	POU3F3 (ENSOCUG00000010933)	MRPS9 (ENSOCUG00000015017) #35	TGFBRAP1 (ENSOCUG00000015024) #37	C2orf49 (ENSOCUG00000007963)	FHL2 (ENSOCUG00000007967)
Pika	MODERN SPECIES	2520												CNOT11 (ENSOPRG00000009923) #18	ENSOPRG00000009939 #19	CREG2 (ENSOPRG00000009953)	ENSOPRG00000009966	MAP4K4 (ENSOPRG00000009971) #22
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000017614.j	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Hystricomorpha_a	ANCESTRAL SPECIES	52	ENSGT00390000017614.j	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Hystricomorpha_b	ANCESTRAL SPECIES	59	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.o #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.a.b ##16	ENSGT00950000183030.m.a.a.b.b.a.b.b.b ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Long-tailed chinchilla	MODERN SPECIES	177	LYG2 (ENSCLAG00000006394)	LYG1 (ENSCLAG00000006423)	TXNDC9 (ENSCLAG00000006644)	EIF5B (ENSCLAG00000007674)	REV1 (ENSCLAG00000009243) #7	AFF3 (ENSCLAG00000017100) #8	CHST10 (ENSCLAG00000003206) #10	NMS (ENSCLAG00000004166) #12	ENSCLAG00000004610 #13	NPAS2 (ENSCLAG00000006228) #14	RPL31 (ENSCLAG00000006775) ##16	TBC1D8 (ENSCLAG00000013253) #17	ENSCLAG00000014249 #18	ENSCLAG00000008966 #19	RFX8 (ENSCLAG00000009461) #21	MAP4K4 (ENSCLAG00000008989) #22	IL1R2 (ENSCLAG00000003202) #23	ENSCLAG00000003425 #25	IL1RL2 (ENSCLAG00000003870) #26	ENSCLAG00000004065 #27	IL18R1 (ENSCLAG00000004416) #28	IL18RAP (ENSCLAG00000005267) #29	SLC9A4 (ENSCLAG00000005526) #30	SLC9A2 (ENSCLAG00000004660) #31	MFSD9 (ENSCLAG00000004767) #32	TMEM182 (ENSCLAG00000004968) #33	MRPS9 (ENSCLAG00000005209) #35	GPR45 (ENSCLAG00000017756) #36	TGFBRAP1 (ENSCLAG00000005507) #37	C2orf49 (ENSCLAG00000005595)	FHL2 (ENSCLAG00000008685)
Degu	MODERN SPECIES	93	ENSODEG00000008190	ENSODEG00000008333	REV1 (ENSODEG00000008237) #7	ENSODEG00000007806 #8	ENSODEG00000010897 #8	CHST10 (ENSODEG00000008815) #10	NMS (ENSODEG00000007962) #12	ENSODEG00000007395 #13	ENSODEG00000009555 #14	ENSODEG00000007744 ##16	TBC1D8 (ENSODEG00000010987) #17	ENSODEG00000009367	CNOT11 (ENSODEG00000007133) #18	CREG2 (ENSODEG00000008331)	RFX8 (ENSODEG00000008257) #21	MAP4K4 (ENSODEG00000007726) #22	IL1R1 (ENSODEG00000009505) #25	IL1RL2 (ENSODEG00000008598) #26	IL1RL1 (ENSODEG00000007332) #27	IL18R1 (ENSODEG00000007946) #28	SLC9A4 (ENSODEG00000010039) #30	SLC9A2 (ENSODEG00000011273) #31	MFSD9 (ENSODEG00000008325) #32	TMEM182 (ENSODEG00000009218) #33	POU3F3 (ENSODEG00000008245)	MRPS9 (ENSODEG00000008818) #35	GPR45 (ENSODEG00000019888) #36	ENSODEG00000008779 #37	C2orf49 (ENSODEG00000009180)	FHL2 (ENSODEG00000008211)	NCK2 (ENSODEG00000008391)
Guinea pig	MODERN SPECIES	24	LYG1 (ENSCPOG00000040702)	TXNDC9 (ENSCPOG00000035803)	ENSCPOG00000011967	REV1 (ENSCPOG00000011981) #7	AFF3 (ENSCPOG00000006346) #8	CHST10 (ENSCPOG00000006356) #10	NMS (ENSCPOG00000004100) #12	PDCL3 (ENSCPOG00000033717) #13	ENSCPOG00000034101 #14	ENSCPOG00000021031 #16	TBC1D8 (ENSCPOG00000027502) #17	CNOT11 (ENSCPOG00000012029) #18	RNF149 (ENSCPOG00000022648) #19	CREG2 (ENSCPOG00000010561)	RFX8 (ENSCPOG00000002640) #21	MAP4K4 (ENSCPOG00000011630) #22	IL1R2 (ENSCPOG00000037563) #23	IL1R1 (ENSCPOG00000032016) #25	IL1RL2 (ENSCPOG00000003204) #26	IL1RL1 (ENSCPOG00000013443) #27	IL18R1 (ENSCPOG00000022527) #28	IL18RAP (ENSCPOG00000014120) #29	SLC9A4 (ENSCPOG00000033768) #30	SLC9A2 (ENSCPOG00000007613) #31	MFSD9 (ENSCPOG00000035138) #32	TMEM182 (ENSCPOG00000007626) #33	ENSCPOG00000003373	MRPS9 (ENSCPOG00000013967) #35	GPR45 (ENSCPOG00000035701) #36	TGFBRAP1 (ENSCPOG00000001606) #37	C2orf49 (ENSCPOG00000034878)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000013293	ENSHGLG00000038637	ENSHGLG00000011626	ENSHGLG00000008277	ENSHGLG00000036882	ARHGAP21 (ENSHGLG00000008443)	ENKUR (ENSHGLG00000005349)	ENSHGLG00000004916	ENSHGLG00000045437	ENSHGLG00000044566	ENSHGLG00000047037	ENSHGLG00000044474	ENSHGLG00000034504	ENSHGLG00000040816	ENSHGLG00000004801	ENSHGLG00000048157 #22	MYO3A (ENSHGLG00000008329)	GAD2 (ENSHGLG00000007030)	APBB1IP (ENSHGLG00000006286)	PDSS1 (ENSHGLG00000004870)	ENSHGLG00000009383	ENSHGLG00000049879	ENSHGLG00000038882	ENSHGLG00000009411	ENSHGLG00000008066	ENSHGLG00000048158	ENSHGLG00000050062	ENSHGLG00000047345
Naked mole-rat female	MODERN SPECIES	23	REV1 (ENSHGLG00000016395) #7	ENSHGLG00000005004 #8	ENSHGLG00000034304 #8	ENSHGLG00000047132	ENSHGLG00000006594 #10	ENSHGLG00000046670 #12	PDCL3 (ENSHGLG00000038612) #13	ENSHGLG00000050067	ENSHGLG00000010608	NPAS2 (ENSHGLG00000015275) #14	RPL31 (ENSHGLG00000034864) ##16	TBC1D8 (ENSHGLG00000005052) #17	CNOT11 (ENSHGLG00000005196) #18	CREG2 (ENSHGLG00000045007)	RFX8 (ENSHGLG00000009282) #21	MAP4K4 (ENSHGLG00000010571) #22	ENSHGLG00000041789	IL1R2 (ENSHGLG00000014764) #23	ENSHGLG00000042381	ENSHGLG00000036054	ENSHGLG00000046327	IL1R1 (ENSHGLG00000035160) #25	IL1RL2 (ENSHGLG00000006830) #26	IL1RL1 (ENSHGLG00000009148) #27	IL18R1 (ENSHGLG00000014630) #28	IL18RAP (ENSHGLG00000040342) #29	SLC9A4 (ENSHGLG00000015136) #30	SLC9A2 (ENSHGLG00000016134) #31	ENSHGLG00000036196 #32	TMEM182 (ENSHGLG00000048689) #33	ENSHGLG00000004651
Sciuridae	ANCESTRAL SPECIES	61												ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Marmotini	ANCESTRAL SPECIES	103												ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Marmotini_b	ANCESTRAL SPECIES	214												ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33
Arctic ground squirrel	MODERN SPECIES	389											CNOT11 (ENSUPAG00010008934) #18	RNF149 (ENSUPAG00010008945) #19	ENSUPAG00010008977	CREG2 (ENSUPAG00010008997)	RFX8 (ENSUPAG00010009009) #21	MAP4K4 (ENSUPAG00010009052) #22	IL1R2 (ENSUPAG00010010625) #23	IL1R1 (ENSUPAG00010010814) #25	IL1RL2 (ENSUPAG00010010855) #26	ENSUPAG00010010880 #27	IL18R1 (ENSUPAG00010010899) #28	IL18RAP (ENSUPAG00010010926) #29	SLC9A4 (ENSUPAG00010010967) #30	SLC9A2 (ENSUPAG00010010983) #31	MFSD9 (ENSUPAG00010011005) #32	TMEM182 (ENSUPAG00010011013) #33
Squirrel	MODERN SPECIES	313												CNOT11 (ENSSTOG00000002674) #18	RNF149 (ENSSTOG00000002701) #19	CREG2 (ENSSTOG00000005261)	RFX8 (ENSSTOG00000005252) #21	MAP4K4 (ENSSTOG00000012689) #22	IL1R2 (ENSSTOG00000008491) #23	IL1R1 (ENSSTOG00000022224) #25	IL1RL2 (ENSSTOG00000004136) #26	IL1RL1 (ENSSTOG00000004162) #27	IL18R1 (ENSSTOG00000004181) #28	SLC9A4 (ENSSTOG00000004218) #30	SLC9A2 (ENSSTOG00000004249) #31	MFSD9 (ENSSTOG00000026538) #32	TMEM182 (ENSSTOG00000021121) #33
Alpin marmot	MODERN SPECIES	99												CNOT11 (ENSMMMG00000019519) #18	ENSMMMG00000019511 #19	CREG2 (ENSMMMG00000019502)	RFX8 (ENSMMMG00000019489) #21	MAP4K4 (ENSMMMG00000019140) #22	IL1R2 (ENSMMMG00000019123) #23	IL1R1 (ENSMMMG00000019096) #25	IL1RL2 (ENSMMMG00000019064) #26	IL1RL1 (ENSMMMG00000019023) #27	IL18R1 (ENSMMMG00000018982) #28	IL18RAP (ENSMMMG00000018945) #29	SLC9A4 (ENSMMMG00000018936) #30	SLC9A2 (ENSMMMG00000018920) #31	MFSD9 (ENSMMMG00000018912) #32	TMEM182 (ENSMMMG00000018908) #33	MRPS9 (ENSMMMG00000018867) #35	GPR45 (ENSMMMG00000018860) #36	TGFBRAP1 (ENSMMMG00000018810) #37	C2orf49 (ENSMMMG00000018804)	FHL2 (ENSMMMG00000018792)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	3	PIP4K2A (ENSSVLG00005018202)	ARMC3 (ENSSVLG00005017564)	MSRB2 (ENSSVLG00005017505)	PTF1A (ENSSVLG00005017462)	ENSSVLG00005017420	OTUD1 (ENSSVLG00005016919)	KIAA1217 (ENSSVLG00005015769)	ARHGAP21 (ENSSVLG00005014772)	ENSSVLG00005014651	PRTFDC1 (ENSSVLG00005014583)	ENKUR (ENSSVLG00005014473)	THNSL1 (ENSSVLG00005014444)	ENSSVLG00005014402	GPR158 (ENSSVLG00005014159)	ENSSVLG00005014103	ENSSVLG00005014026 #22	GAD2 (ENSSVLG00005013824)	APBB1IP (ENSSVLG00005013617)	ENSSVLG00005013262	PDSS1 (ENSSVLG00005013153)	ABI1 (ENSSVLG00005012684)	ENSSVLG00005012546	ACBD5 (ENSSVLG00005012182)	MASTL (ENSSVLG00005011787)	YME1L1 (ENSSVLG00005011675)	ENSSVLG00005011610	CCDC3 (ENSSVLG00005011541)	ENSSVLG00005011462	CAMK1D (ENSSVLG00005011210)	CDC123 (ENSSVLG00005011124)	NUDT5 (ENSSVLG00005011015)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005017910	ST6GAL2 (ENSSVLG00005017851)	ENSSVLG00005017814	SLC5A7 (ENSSVLG00005017705)	ENSSVLG00005017658	ENSSVLG00005017620	ENSSVLG00005017536	ENSSVLG00005017486	ENSSVLG00005017437	ENSSVLG00005017192	ENSSVLG00005017114	CNOT11 (ENSSVLG00005017020) #18	RNF149 (ENSSVLG00005016973) #19	CREG2 (ENSSVLG00005016917)	RFX8 (ENSSVLG00005016773) #21	MAP4K4 (ENSSVLG00005016510) #22	IL1R2 (ENSSVLG00005016305) #23	IL1R1 (ENSSVLG00005016023) #25	IL1RL2 (ENSSVLG00005015833) #26	ENSSVLG00005015618 #27	IL18R1 (ENSSVLG00005015483) #28	IL18RAP (ENSSVLG00005015196) #29	SLC9A4 (ENSSVLG00005015058) #30	SLC9A2 (ENSSVLG00005014903) #31	MFSD9 (ENSSVLG00005014829) #32	TMEM182 (ENSSVLG00005014677) #33	POU3F3 (ENSSVLG00005014648)	MRPS9 (ENSSVLG00005014535) #35	GPR45 (ENSSVLG00005014512) #36	TGFBRAP1 (ENSSVLG00005014478) #37	C2orf49 (ENSSVLG00005014398)
Rodentia_B	ANCESTRAL SPECIES	36	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Myomorpha	ANCESTRAL SPECIES	40	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Muroidea	ANCESTRAL SPECIES	45	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Cricetinae	ANCESTRAL SPECIES	28	ENSGT00390000015645.g	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Chinese hamster chok1gshd	MODERN SPECIES	165	ENSCGRG00001009957	Eif5b (ENSCGRG00001010937)	Rev1 (ENSCGRG00001019272) #7	Aff3 (ENSCGRG00001014566) #8	Lonrf2 (ENSCGRG00001006964) #9	Chst10 (ENSCGRG00001023533) #10	Nms (ENSCGRG00001019460) #12	Pdcl3 (ENSCGRG00001016908) #13	Npas2 (ENSCGRG00001008921) #14	ENSCGRG00001018894 ##16	Tbc1d8 (ENSCGRG00001020779) #17	Cnot11 (ENSCGRG00001018815) #18	Rnf149 (ENSCGRG00001009277) #19	Creg2 (ENSCGRG00001008591)	Rfx8 (ENSCGRG00001019751) #21	Map4k4 (ENSCGRG00001014594) #22	Il1r2 (ENSCGRG00001012348) #23	Il1r1 (ENSCGRG00001008398) #25	Il1rl2 (ENSCGRG00001015507) #26	Il1rl1 (ENSCGRG00001000922) #27	Il18r1 (ENSCGRG00001003731) #28	Il18rap (ENSCGRG00001020521) #29	Slc9a4 (ENSCGRG00001013202) #30	Slc9a2 (ENSCGRG00001020868) #31	Mfsd9 (ENSCGRG00001020127) #32	Tmem182 (ENSCGRG00001013568) #33	Pou3f3 (ENSCGRG00001001262)	Mrps9 (ENSCGRG00001012228) #35	Gpr45 (ENSCGRG00001001563) #36	Tgfbrap1 (ENSCGRG00001001074) #37	AI597479 (ENSCGRG00001000237)
Golden Hamster	MODERN SPECIES	671	Lyg1 (ENSMAUG00000007748)	Txndc9 (ENSMAUG00000013397)	ENSMAUG00000016089	Rev1 (ENSMAUG00000019944) #7	ENSMAUG00000013003 #8	ENSMAUG00000004398	ENSMAUG00000012235 #9	Chst10 (ENSMAUG00000000525) #10	ENSMAUG00000002348	ENSMAUG00000014729 #13	ENSMAUG00000012976 #14	Tbc1d8 (ENSMAUG00000012769) #17	Cnot11 (ENSMAUG00000008251) #18	Rnf149 (ENSMAUG00000022122) #19	Rfx8 (ENSMAUG00000022016) #21	Map4k4 (ENSMAUG00000009759) #22	Il1r2 (ENSMAUG00000019130) #23	Il1rl2 (ENSMAUG00000015098) #26	Il1rl1 (ENSMAUG00000013794) #27	Il18r1 (ENSMAUG00000018302) #28	Il18rap (ENSMAUG00000015985) #29	Slc9a4 (ENSMAUG00000011978) #30	Slc9a2 (ENSMAUG00000012644) #31	Mfsd9 (ENSMAUG00000019056) #32	Tmem182 (ENSMAUG00000008293) #33	Pou3f3 (ENSMAUG00000006830)	Mrps9 (ENSMAUG00000014517) #35	Gpr45 (ENSMAUG00000020154) #36	Tgfbrap1 (ENSMAUG00000010940) #37	AI597479 (ENSMAUG00000009584)	Fhl2 (ENSMAUG00000007307)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00960000186941 #15	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Prairie vole	MODERN SPECIES	352	ENSMOCG00000005082 #8	ENSMOCG00000005572 #8	Lonrf2 (ENSMOCG00000017896) #9	Chst10 (ENSMOCG00000016355) #10	Nms (ENSMOCG00000008968) #12	ENSMOCG00000007220 #13	ENSMOCG00000015837	ENSMOCG00000003508 #14	Rpl31 (ENSMOCG00000012618) #16	Tbc1d8 (ENSMOCG00000020892) #17	Cnot11 (ENSMOCG00000020059) #18	ENSMOCG00000022614 #19	ENSMOCG00000004327	Creg2 (ENSMOCG00000005255)	Rfx8 (ENSMOCG00000020079) #21	Map4k4 (ENSMOCG00000003196) #22	Il1r2 (ENSMOCG00000014917) #23	Il1r1 (ENSMOCG00000012872) #25	Il1rl2 (ENSMOCG00000021017) #26	Il1rl1 (ENSMOCG00000013141) #27	Il18r1 (ENSMOCG00000018379) #28	Il18rap (ENSMOCG00000000247) #29	Slc9a4 (ENSMOCG00000019168) #30	Slc9a2 (ENSMOCG00000001948) #31	Mfsd9 (ENSMOCG00000018562) #32	Tmem182 (ENSMOCG00000013151) #33	Mrps9 (ENSMOCG00000008753) #35	Gpr45 (ENSMOCG00000006013) #36	Tgfbrap1 (ENSMOCG00000017029) #37	AI597479 (ENSMOCG00000011309)	Fhl2 (ENSMOCG00000008372)
Northern American deer mouse	MODERN SPECIES	13	Txndc9 (ENSPEMG00000014087)	Eif5b (ENSPEMG00000030389)	Rev1 (ENSPEMG00000001449) #7	Aff3 (ENSPEMG00000014802) #8	Lonrf2 (ENSPEMG00000020083) #9	Chst10 (ENSPEMG00000025090) #10	Nms (ENSPEMG00000019828) #12	Pdcl3 (ENSPEMG00000013451) #13	Npas2 (ENSPEMG00000027016) #14	Rpl31 (ENSPEMG00000011336) #16	ENSPEMG00000027601 #15	Tbc1d8 (ENSPEMG00000009663) #17	Rnf149 (ENSPEMG00000012870) #19	Creg2 (ENSPEMG00000004685)	Rfx8 (ENSPEMG00000000748) #21	Map4k4 (ENSPEMG00000011266) #22	Il1r2 (ENSPEMG00000005448) #23	Il1r1 (ENSPEMG00000015111) #25	Il1rl2 (ENSPEMG00000010586) #26	Il1rl1 (ENSPEMG00000000517) #27	Il18r1 (ENSPEMG00000020042) #28	Il18rap (ENSPEMG00000000406) #29	Slc9a4 (ENSPEMG00000017892) #30	Slc9a2 (ENSPEMG00000019513) #31	Mfsd9 (ENSPEMG00000016627) #32	Tmem182 (ENSPEMG00000027682) #33	ENSPEMG00000025331	ENSPEMG00000019460	Mrps9 (ENSPEMG00000020068) #35	ENSPEMG00000030538	Gpr45 (ENSPEMG00000012991) #36
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00860000135990	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00960000191981	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Mus	ANCESTRAL SPECIES	5	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00860000135990	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00960000191981	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00860000135990	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00960000191981	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Mus_B	ANCESTRAL SPECIES	21	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00860000135990	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00960000191981	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00860000135990	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT00960000191981	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Steppe mouse	MODERN SPECIES	3348		Aff3 (ENSMSIG00000021936) #8	Lonrf2 (ENSMSIG00000022046) #9	Chst10 (ENSMSIG00000022069) #10	Nms (ENSMSIG00000022133) #12	Pdcl3 (ENSMSIG00000022157) #13	ENSMSIG00000022177	Npas2 (ENSMSIG00000022192) #14	Rpl31 (ENSMSIG00000022245) #16	Tbc1d8 (ENSMSIG00000022280) #17	Cnot11 (ENSMSIG00000022348) #18	Rnf149 (ENSMSIG00000022375) #19	Creg2 (ENSMSIG00000022406)	Rfx8 (ENSMSIG00000022417) #21	ENSMSIG00000022440	Map4k4 (ENSMSIG00000022455) #22	Il1r2 (ENSMSIG00000025031) #23	Il1r1 (ENSMSIG00000025043) #25	Il1rl2 (ENSMSIG00000025067) #26	ENSMSIG00000025093	Il1rl1 (ENSMSIG00000025096) #27	Il18r1 (ENSMSIG00000025150) #28	Il18rap (ENSMSIG00000025343) #29	Slc9a4 (ENSMSIG00000025357) #30	Slc9a2 (ENSMSIG00000025415) #31	Mfsd9 (ENSMSIG00000025439) #32	Tmem182 (ENSMSIG00000025450) #33	ENSMSIG00000025470	ENSMSIG00000025480	Mrps9 (ENSMSIG00000025504) #35	Gpr45 (ENSMSIG00000025534) #36
spretus	MODERN SPECIES		Eif5b (MGP_SPRETEiJ_G0014865)	Rev1 (MGP_SPRETEiJ_G0014866) #7	Aff3 (MGP_SPRETEiJ_G0014867) #8	Lonrf2 (MGP_SPRETEiJ_G0014868) #9	Chst10 (MGP_SPRETEiJ_G0014869) #10	Nms (MGP_SPRETEiJ_G0014870) #12	Pdcl3 (MGP_SPRETEiJ_G0014871) #13	Npas2 (MGP_SPRETEiJ_G0014872) #14	Rpl31 (MGP_SPRETEiJ_G0014873) #16	Tbc1d8 (MGP_SPRETEiJ_G0014874) #17	Cnot11 (MGP_SPRETEiJ_G0014875) #18	Rnf149 (MGP_SPRETEiJ_G0014876) #19	Creg2 (MGP_SPRETEiJ_G0014877)	Rfx8 (MGP_SPRETEiJ_G0014878) #21	MGP_SPRETEiJ_G0014879	Map4k4 (MGP_SPRETEiJ_G0014880) #22	MGP_SPRETEiJ_G0014881 #23	Il1r1 (MGP_SPRETEiJ_G0014882) #25	Il1rl2 (MGP_SPRETEiJ_G0014883) #26	Il1rl1 (MGP_SPRETEiJ_G0014884) #27	Il18r1 (MGP_SPRETEiJ_G0014885) #28	Il18rap (MGP_SPRETEiJ_G0014886) #29	Slc9a4 (MGP_SPRETEiJ_G0014887) #30	Slc9a2 (MGP_SPRETEiJ_G0014888) #31	Mfsd9 (MGP_SPRETEiJ_G0014889) #32	Tmem182 (MGP_SPRETEiJ_G0014890) #33	Pou3f3 (MGP_SPRETEiJ_G0014891)	Mrps9 (MGP_SPRETEiJ_G0014892) #35	Gpr45 (MGP_SPRETEiJ_G0014893) #36	Tgfbrap1 (MGP_SPRETEiJ_G0014894) #37	AI597479 (MGP_SPRETEiJ_G0014895)
Mouse	MODERN SPECIES		Txndc9 (ENSMUSG00000058407)	Eif5b (ENSMUSG00000026083)	Rev1 (ENSMUSG00000026082) #7	Aff3 (ENSMUSG00000037138) #8	Lonrf2 (ENSMUSG00000048814) #9	Chst10 (ENSMUSG00000026080) #10	Nms (ENSMUSG00000067604) #12	Pdcl3 (ENSMUSG00000026078) #13	Npas2 (ENSMUSG00000026077) #14	Rpl31 (ENSMUSG00000073702) #16	Tbc1d8 (ENSMUSG00000003134) #17	Cnot11 (ENSMUSG00000003135) #18	Rnf149 (ENSMUSG00000048234) #19	Creg2 (ENSMUSG00000050967)	Rfx8 (ENSMUSG00000057173) #21	Map4k4 (ENSMUSG00000026074) #22	Il1r2 (ENSMUSG00000026073) #23	Il1r1 (ENSMUSG00000026072) #25	Il1rl2 (ENSMUSG00000070942) #26	Il1rl1 (ENSMUSG00000026069) #27	Il18r1 (ENSMUSG00000026070) #28	Il18rap (ENSMUSG00000026068) #29	Slc9a4 (ENSMUSG00000026065) #30	Slc9a2 (ENSMUSG00000026062) #31	Mfsd9 (ENSMUSG00000041945) #32	Tmem182 (ENSMUSG00000079588) #33	Pou3f3 (ENSMUSG00000045515)	Mrps9 (ENSMUSG00000060679) #35	Gpr45 (ENSMUSG00000041907) #36	Tgfbrap1 (ENSMUSG00000070939) #37	AI597479 (ENSMUSG00000010290)
Ryukyu mouse	MODERN SPECIES		Eif5b (MGP_CAROLIEiJ_G0014061)	Rev1 (MGP_CAROLIEiJ_G0014062) #7	Aff3 (MGP_CAROLIEiJ_G0014063) #8	MGP_CAROLIEiJ_G0014064 #9	MGP_CAROLIEiJ_G0014065 #10	Nms (MGP_CAROLIEiJ_G0014066) #12	Pdcl3 (MGP_CAROLIEiJ_G0014067) #13	Npas2 (MGP_CAROLIEiJ_G0014068) #14	Rpl31 (MGP_CAROLIEiJ_G0014069) #16	Tbc1d8 (MGP_CAROLIEiJ_G0014070) #17	Cnot11 (MGP_CAROLIEiJ_G0014071) #18	Rnf149 (MGP_CAROLIEiJ_G0014072) #19	Creg2 (MGP_CAROLIEiJ_G0014073)	Rfx8 (MGP_CAROLIEiJ_G0014074) #21	MGP_CAROLIEiJ_G0014075	Map4k4 (MGP_CAROLIEiJ_G0014076) #22	Il1r2 (MGP_CAROLIEiJ_G0014077) #23	Il1r1 (MGP_CAROLIEiJ_G0014078) #25	Il1rl2 (MGP_CAROLIEiJ_G0014079) #26	Il1rl1 (MGP_CAROLIEiJ_G0014080) #27	Il18r1 (MGP_CAROLIEiJ_G0014081) #28	Il18rap (MGP_CAROLIEiJ_G0014082) #29	Slc9a4 (MGP_CAROLIEiJ_G0014083) #30	Slc9a2 (MGP_CAROLIEiJ_G0014084) #31	Mfsd9 (MGP_CAROLIEiJ_G0014085) #32	Tmem182 (MGP_CAROLIEiJ_G0014086) #33	Pou3f3 (MGP_CAROLIEiJ_G0014087)	Mrps9 (MGP_CAROLIEiJ_G0014088) #35	Gpr45 (MGP_CAROLIEiJ_G0014089) #36	Tgfbrap1 (MGP_CAROLIEiJ_G0014090) #37	AI597479 (MGP_CAROLIEiJ_G0014091)
Shrew mouse	MODERN SPECIES	18	Lyg1 (MGP_PahariEiJ_G0027306)	Txndc9 (MGP_PahariEiJ_G0027307)	Eif5b (MGP_PahariEiJ_G0027308)	Rev1 (MGP_PahariEiJ_G0027309) #7	Aff3 (MGP_PahariEiJ_G0027310) #8	Lonrf2 (MGP_PahariEiJ_G0027311) #9	Chst10 (MGP_PahariEiJ_G0027312) #10	Nms (MGP_PahariEiJ_G0027313) #12	Pdcl3 (MGP_PahariEiJ_G0027314) #13	Npas2 (MGP_PahariEiJ_G0027315) #14	MGP_PahariEiJ_G0027316 ##16	Tbc1d8 (MGP_PahariEiJ_G0027317) #17	Cnot11 (MGP_PahariEiJ_G0027318) #18	Rnf149 (MGP_PahariEiJ_G0027319) #19	MGP_PahariEiJ_G0027320	Map4k4 (MGP_PahariEiJ_G0027321) #22	Il1r2 (MGP_PahariEiJ_G0027322) #23	Il1r1 (MGP_PahariEiJ_G0027323) #25	MGP_PahariEiJ_G0027324 ##23	Il1rl1 (MGP_PahariEiJ_G0027325) #27	Il18r1 (MGP_PahariEiJ_G0027326) #28	Il18rap (MGP_PahariEiJ_G0027327) #29	Slc9a4 (MGP_PahariEiJ_G0027328) #30	Slc9a2 (MGP_PahariEiJ_G0027329) #31	Mfsd9 (MGP_PahariEiJ_G0027330) #32	Tmem182 (MGP_PahariEiJ_G0027331) #33	Pou3f3 (MGP_PahariEiJ_G0027332)	Mrps9 (MGP_PahariEiJ_G0027333) #35	Gpr45 (MGP_PahariEiJ_G0027334) #36	Tgfbrap1 (MGP_PahariEiJ_G0027335) #37	AI597479 (MGP_PahariEiJ_G0027336)
Rat	MODERN SPECIES	19	Rev1 (ENSRNOG00000018623) #7	Aff3 (ENSRNOG00000018830) #8	Lonrf2 (ENSRNOG00000023312) #9	Chst10 (ENSRNOG00000012815) #10	NMS (ENSRNOG00000038979) #12	Pdcl3 (ENSRNOG00000013286) #13	AABR07067441.3 (ENSRNOG00000052328)	Npas2 (ENSRNOG00000013408) #14	Rpl31 (ENSRNOG00000013508) #16	Tbc1d8 (ENSRNOG00000013583) #17	Cnot11 (ENSRNOG00000023220) #18	Rnf149 (ENSRNOG00000013946) #19	Creg2 (ENSRNOG00000013991)	Rfx8 (ENSRNOG00000058243) #21	ENSRNOG00000068018	Map4k4 (ENSRNOG00000014013) #22	Il1r2 (ENSRNOG00000014378) #23	RGD1564447 (ENSRNOG00000032108)	Il1r1 (ENSRNOG00000014504) #25	Il1rl2 (ENSRNOG00000014683) #26	AABR07067459.1 (ENSRNOG00000061227)	Il1rl1 (ENSRNOG00000014835) #27	Il18r1 (ENSRNOG00000015027) #28	Il18rap (ENSRNOG00000054218) #29	Slc9a4 (ENSRNOG00000015306) #30	Slc9a2 (ENSRNOG00000015567) #31	Mfsd9 (ENSRNOG00000023129) #32	Tmem182 (ENSRNOG00000028945) #33	Pou3f3 (ENSRNOG00000038909)	Mrps9 (ENSRNOG00000016201) #35	Arpc5l-ps1 (ENSRNOG00000067388)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735																ENSNGAG00000020818 #22	Sp5 (ENSNGAG00000021968)	ENSNGAG00000016065	Gad1 (ENSNGAG00000001182)	Gorasp2 (ENSNGAG00000022582)	ENSNGAG00000002431	ENSNGAG00000023622	Mettl8 (ENSNGAG00000023053)	Dcaf17 (ENSNGAG00000018502)	Cybrd1 (ENSNGAG00000022040)	Dync1i2 (ENSNGAG00000022933)	Slc25a12 (ENSNGAG00000013005)	Hat1 (ENSNGAG00000019860)	ENSNGAG00000004663	Dlx1 (ENSNGAG00000022526)	Dlx2 (ENSNGAG00000022793)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1304	ENSNGAG00000004780	ENSNGAG00000016613	Aff3 (ENSNGAG00000002408) #8	Lonrf2 (ENSNGAG00000003807) #9	Chst10 (ENSNGAG00000010913) #10	Nms (ENSNGAG00000012529) #12	Pdcl3 (ENSNGAG00000015075) #13	ENSNGAG00000016958 #14	ENSNGAG00000017295 #14	ENSNGAG00000000892 ##16	Tbc1d8 (ENSNGAG00000005697) #17	Cnot11 (ENSNGAG00000014276) #18	Rnf149 (ENSNGAG00000020073) #19	Creg2 (ENSNGAG00000020471)	Rfx8 (ENSNGAG00000000946) #21	Map4k4 (ENSNGAG00000002387) #22	Il1r2 (ENSNGAG00000013185) #23	Il1r1 (ENSNGAG00000014404) #25	Il1rl2 (ENSNGAG00000018938) #26	Il1rl1 (ENSNGAG00000020691) #27	Il18r1 (ENSNGAG00000020204) #28
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	72	ENSJJAG00000022119	ENSJJAG00000004790	ENSJJAG00000014995	Gypc (ENSJJAG00000021602)	ENSJJAG00000012725	ENSJJAG00000018286	Otud1 (ENSJJAG00000001123)	ENSJJAG00000018392	ENSJJAG00000010796	Etl4 (ENSJJAG00000019527)	Arhgap21 (ENSJJAG00000011661)	ENSJJAG00000018530	Enkur (ENSJJAG00000017061)	ENSJJAG00000020324	Gpr158 (ENSJJAG00000002089)	ENSJJAG00000020027 #22	ENSJJAG00000018582	Gad2 (ENSJJAG00000018593)	Apbb1ip (ENSJJAG00000012590)	Pdss1 (ENSJJAG00000020874)	Abi1 (ENSJJAG00000019793)	Mastl (ENSJJAG00000017405)	Yme1l1 (ENSJJAG00000021372)	Pard3 (ENSJJAG00000017258)	Nrp1 (ENSJJAG00000022173)	ENSJJAG00000013022	ENSJJAG00000006058	ENSJJAG00000023843	ENSJJAG00000018667
Lesser Egyptian jerboa	MODERN SPECIES	46	ENSJJAG00000017349	Bcl2l11 (ENSJJAG00000021109)	ENSJJAG00000006427	Mertk (ENSJJAG00000013479)	Tmem87b (ENSJJAG00000024136)	Fbln7 (ENSJJAG00000013091)	Chst10 (ENSJJAG00000010292) #10	Nms (ENSJJAG00000004537) #12	ENSJJAG00000010749 #13	ENSJJAG00000015742 #14	Rpl31 (ENSJJAG00000012790) #16	Tbc1d8 (ENSJJAG00000017814) #17	Cnot11 (ENSJJAG00000017976) #18	Rnf149 (ENSJJAG00000007564) #19	Creg2 (ENSJJAG00000016924)	Map4k4 (ENSJJAG00000013973) #22	ENSJJAG00000022692	ENSJJAG00000019399	Il1r2 (ENSJJAG00000013732) #23	Il1r1 (ENSJJAG00000011570) #25	Il1rl2 (ENSJJAG00000023541) #26	Il1rl1 (ENSJJAG00000011833) #27	Il18r1 (ENSJJAG00000019528) #28	Slc9a4 (ENSJJAG00000016032) #30	Slc9a2 (ENSJJAG00000014175) #31	Mfsd9 (ENSJJAG00000016903) #32	Tmem182 (ENSJJAG00000012535) #33	ENSJJAG00000021686	ENSJJAG00000001151 #35	Gpr45 (ENSJJAG00000010952) #36	ENSJJAG00000014937 #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	343	Commd3 (ENSDORG00000027082)	Bmi1 (ENSDORG00000027813)	ENSDORG00000005587	Pip4k2a (ENSDORG00000002100)	Armc3 (ENSDORG00000000892)	Msrb2 (ENSDORG00000007658)	Ptf1a (ENSDORG00000026200)	Otud1 (ENSDORG00000025924)	Etl4 (ENSDORG00000011137)	Arhgap21 (ENSDORG00000006139)	ENSDORG00000000872	Enkur (ENSDORG00000015534)	Thnsl1 (ENSDORG00000028470)	ENSDORG00000024997	Gpr158 (ENSDORG00000000417)	ENSDORG00000028759 #22	ENSDORG00000028584	Gad2 (ENSDORG00000004189)	Apbb1ip (ENSDORG00000009613)	Pdss1 (ENSDORG00000004641)	Abi1 (ENSDORG00000004644)	Acbd5 (ENSDORG00000011034)	ENSDORG00000006106	Mastl (ENSDORG00000023472)	Yme1l1 (ENSDORG00000007653)	ENSDORG00000025588	ENSDORG00000030026	Kif5b (ENSDORG00000009869)	Arhgap12 (ENSDORG00000000084)	Zeb1 (ENSDORG00000007230)	Zfp438 (ENSDORG00000000914)
Kangaroo rat	MODERN SPECIES	366	Txndc9 (ENSDORG00000013557)	ENSDORG00000027717	Rev1 (ENSDORG00000013563) #7	Aff3 (ENSDORG00000007294) #8	Lonrf2 (ENSDORG00000014508) #9	Chst10 (ENSDORG00000014722) #10	Pdcl3 (ENSDORG00000012397) #13	ENSDORG00000027399 #14	ENSDORG00000029805	ENSDORG00000015728 ##16	Tbc1d8 (ENSDORG00000015729) #17	Cnot11 (ENSDORG00000004481) #18	Rnf149 (ENSDORG00000007032) #19	Creg2 (ENSDORG00000026419)	Rfx8 (ENSDORG00000027680) #21	Map4k4 (ENSDORG00000011322) #22	Il1r2 (ENSDORG00000001386) #23	Il1r1 (ENSDORG00000008123) #25	Il1rl2 (ENSDORG00000008125) #26	Il1rl1 (ENSDORG00000000310) #27	Il18r1 (ENSDORG00000009793) #28	Il18rap (ENSDORG00000009798) #29	Slc9a4 (ENSDORG00000009801) #30	Slc9a2 (ENSDORG00000007378) #31	Mfsd9 (ENSDORG00000007380) #32	Tmem182 (ENSDORG00000001502) #33	Agtr2 (ENSDORG00000029423)	Slc6a14 (ENSDORG00000026053)	Klhl13 (ENSDORG00000008906)	Wdr44 (ENSDORG00000006076)	Dock11 (ENSDORG00000012146)
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00980000202892	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155063 #22
Hedgehog	MODERN SPECIES	6533																MAP4K4 (ENSEEUG00000007476) #22
Common shrew	MODERN SPECIES	1195																ENSSARG00000004675 #22
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Carnivora	ANCESTRAL SPECIES	19	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Felidae	ANCESTRAL SPECIES	3	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Panthera	ANCESTRAL SPECIES	2	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Tiger	MODERN SPECIES	576	LYG1 (ENSPTIG00000021980)	TXNDC9 (ENSPTIG00000021915)	EIF5B (ENSPTIG00000021215)	REV1 (ENSPTIG00000020411) #7	AFF3 (ENSPTIG00000018781) #8	LONRF2 (ENSPTIG00000018241) #9	CHST10 (ENSPTIG00000017989) #10	NMS (ENSPTIG00000017606) #12	PDCL3 (ENSPTIG00000017144) #13	NPAS2 (ENSPTIG00000015745) #14	ENSPTIG00000013580 #16	TBC1D8 (ENSPTIG00000009537) #17	CNOT11 (ENSPTIG00000008532) #18	ENSPTIG00000007888 #19	RFX8 (ENSPTIG00000007179) #21	MAP4K4 (ENSPTIG00000016134) #22	IL1R2 (ENSPTIG00000014240) #23	IL1R1 (ENSPTIG00000011750) #25	IL1RL2 (ENSPTIG00000009750) #26	IL1RL1 (ENSPTIG00000007583) #27	IL18R1 (ENSPTIG00000007269) #28	IL18RAP (ENSPTIG00000022023) #29	SLC9A4 (ENSPTIG00000021921) #30	SLC9A2 (ENSPTIG00000021677) #31	MFSD9 (ENSPTIG00000021276) #32	TMEM182 (ENSPTIG00000020452) #33	MRPS9 (ENSPTIG00000019423) #35	GPR45 (ENSPTIG00000004452) #36	TGFBRAP1 (ENSPTIG00000017194) #37	C2orf49 (ENSPTIG00000016546)	FHL2 (ENSPTIG00000015836)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
leopard	MODERN SPECIES	117																MAP4K4 (ENSPPRG00000007228) #22	IL1R2 (ENSPPRG00000007436) #23	ENSPPRG00000007448	IL1R1 (ENSPPRG00000008326) #25	IL1RL2 (ENSPPRG00000008587) #26	IL1RL1 (ENSPPRG00000008646) #27	IL18R1 (ENSPPRG00000008711) #28	IL18RAP (ENSPPRG00000009076) #29	SLC9A4 (ENSPPRG00000009096) #30	SLC9A2 (ENSPPRG00000009146) #31	MFSD9 (ENSPPRG00000009166) #32	TMEM182 (ENSPPRG00000009285) #33	POU3F3 (ENSPPRG00000009296)	MRPS9 (ENSPPRG00000009311) #35	GPR45 (ENSPPRG00000010772) #36	TGFBRAP1 (ENSPPRG00000009423) #37
lion	MODERN SPECIES	3	TXNDC9 (ENSPLOG00000013686)	EIF5B (ENSPLOG00000013724)	REV1 (ENSPLOG00000013773) #7	AFF3 (ENSPLOG00000013918) #8	LONRF2 (ENSPLOG00000014193) #9	CHST10 (ENSPLOG00000014237) #10	NMS (ENSPLOG00000014275) #12	PDCL3 (ENSPLOG00000014385) #13	NPAS2 (ENSPLOG00000014437) #14	ENSPLOG00000014624 #16	TBC1D8 (ENSPLOG00000014789) #17	CNOT11 (ENSPLOG00000014835) #18	RNF149 (ENSPLOG00000014891) #19	CREG2 (ENSPLOG00000015020)	RFX8 (ENSPLOG00000015081) #21	MAP4K4 (ENSPLOG00000015662) #22	IL1R2 (ENSPLOG00000018067) #23	IL1R1 (ENSPLOG00000018144) #25	ENSPLOG00000018209	IL1RL2 (ENSPLOG00000018229) #26	IL1RL1 (ENSPLOG00000018320) #27	IL18R1 (ENSPLOG00000018547) #28	IL18RAP (ENSPLOG00000018648) #29	SLC9A4 (ENSPLOG00000018712) #30	SLC9A2 (ENSPLOG00000018822) #31	MFSD9 (ENSPLOG00000018911) #32	TMEM182 (ENSPLOG00000018944) #33	POU3F3 (ENSPLOG00000019026)	MRPS9 (ENSPLOG00000019052) #35	GPR45 (ENSPLOG00000019146) #36	TGFBRAP1 (ENSPLOG00000019162) #37
Cat	MODERN SPECIES	2	TXNDC9 (ENSFCAG00000013179)	EIF5B (ENSFCAG00000009782)	REV1 (ENSFCAG00000009785) #7	AFF3 (ENSFCAG00000029975) #8	LONRF2 (ENSFCAG00000022308) #9	CHST10 (ENSFCAG00000023928) #10	ENSFCAG00000042561	PDCL3 (ENSFCAG00000042131) #13	NPAS2 (ENSFCAG00000005306) #14	RPL31 (ENSFCAG00000026430) ##16	TBC1D8 (ENSFCAG00000018372) #17	CNOT11 (ENSFCAG00000006924) #18	RNF149 (ENSFCAG00000041323) #19	CREG2 (ENSFCAG00000040690)	RFX8 (ENSFCAG00000027253) #21	MAP4K4 (ENSFCAG00000012149) #22	IL1R2 (ENSFCAG00000012150) #23	ENSFCAG00000034742	IL1R1 (ENSFCAG00000012152) #25	IL1RL2 (ENSFCAG00000030964) #26	IL1RL1 (ENSFCAG00000030791) #27	IL18R1 (ENSFCAG00000007750) #28	IL18RAP (ENSFCAG00000019058) #29	SLC9A4 (ENSFCAG00000018204) #30	SLC9A2 (ENSFCAG00000023377) #31	MFSD9 (ENSFCAG00000044885) #32	TMEM182 (ENSFCAG00000029731) #33	POU3F3 (ENSFCAG00000046112)	MRPS9 (ENSFCAG00000031722) #35	ENSFCAG00000050474	GPR45 (ENSFCAG00000014875) #36
Caniformia	ANCESTRAL SPECIES	18	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Canidae	ANCESTRAL SPECIES	10	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.f #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT01100000263605.i.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00390000003427.q.a	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Red fox	MODERN SPECIES	10	TXNDC9 (ENSVVUG00000028706)	EIF5B (ENSVVUG00000028702)	REV1 (ENSVVUG00000028698) #7	AFF3 (ENSVVUG00000028696) #8	LONRF2 (ENSVVUG00000028688) #9	CHST10 (ENSVVUG00000028686) #10	PDCL3 (ENSVVUG00000028679) #13	NPAS2 (ENSVVUG00000028672) #14	ENSVVUG00000028669 #16	TBC1D8 (ENSVVUG00000028667) #17	CNOT11 (ENSVVUG00000028664) #18	RNF149 (ENSVVUG00000028660) #19	CREG2 (ENSVVUG00000028654)	ENSVVUG00000028653	RFX8 (ENSVVUG00000028648) #21	MAP4K4 (ENSVVUG00000013589) #22	IL1R2 (ENSVVUG00000012859) #23	IL1R1 (ENSVVUG00000012786) #25	IL1RL2 (ENSVVUG00000012775) #26	IL1RL1 (ENSVVUG00000012760) #27	IL18R1 (ENSVVUG00000012740) #28	IL18RAP (ENSVVUG00000012711) #29	ENSVVUG00000012706	SLC9A4 (ENSVVUG00000012698) #30	SLC9A2 (ENSVVUG00000012609) #31	MFSD9 (ENSVVUG00000012601) #32	TMEM182 (ENSVVUG00000012600) #33	YPEL5 (ENSVVUG00000012570)	ENSVVUG00000012534	MRPS9 (ENSVVUG00000012519) #35	GPR45 (ENSVVUG00000012504) #36
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000163657.e.a	ENSGT00510000049213 #12	ENSGT00940000154295.f #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00540000070023.c.a.b	ENSGT01050000244879.b.a.a #21	ENSGT01100000263605.i.b	ENSGT00940000153112.D.h.a.b.a.b.a.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00390000003427.q.a	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Dog	MODERN SPECIES	1	LONRF2 (ENSCAFG00845016364) #9	CHST10 (ENSCAFG00845016252) #10	ENSCAFG00845016217	NMS (ENSCAFG00845016126) #12	PDCL3 (ENSCAFG00845016073) #13	NPAS2 (ENSCAFG00845013162) #14	RPL31 (ENSCAFG00845013103) #16	TBC1D8 (ENSCAFG00845012925) #17	CNOT11 (ENSCAFG00845012861) #18	RNF149 (ENSCAFG00845012717) #19	CREG2 (ENSCAFG00845012626)	ENSCAFG00845012600	ENSCAFG00845012573	ENSCAFG00845012544	RFX8 (ENSCAFG00845012474) #21	MAP4K4 (ENSCAFG00845011330) #22	IL1R2 (ENSCAFG00845010877) #23	IL1R1 (ENSCAFG00845010716) #25	IL1RL2 (ENSCAFG00845010648) #26	IL1RL1 (ENSCAFG00845010486) #28	IL18RAP (ENSCAFG00845010356) #29	ENSCAFG00845010335	SLC9A4 (ENSCAFG00845010292) #30	SLC9A2 (ENSCAFG00845010132) #31	MFSD9 (ENSCAFG00845010103) #32	TMEM182 (ENSCAFG00845010034) #33	ENSCAFG00845009997	POU3F3 (ENSCAFG00845009979)	MRPS9 (ENSCAFG00845009846) #35	GPR45 (ENSCAFG00845009816) #36	TGFBRAP1 (ENSCAFG00845009768) #37
Dingo	MODERN SPECIES	307	LONRF2 (ENSCAFG00020024592) #9	CHST10 (ENSCAFG00020024588) #10	ENSCAFG00020024586	PDCL3 (ENSCAFG00020024584) #13	ENSCAFG00020024580 #14	ENSCAFG00020024578 #14	ENSCAFG00020024576 #16	TBC1D8 (ENSCAFG00020024570) #17	CNOT11 (ENSCAFG00020024562) #18	RNF149 (ENSCAFG00020024557) #19	CREG2 (ENSCAFG00020024556)	ENSCAFG00020024553	RFX8 (ENSCAFG00020024550) #21	ENSCAFG00020024546	ENSCAFG00020024544	MAP4K4 (ENSCAFG00020011352) #22	IL1R2 (ENSCAFG00020010692) #23	IL1R1 (ENSCAFG00020010642) #25	IL1RL2 (ENSCAFG00020010637) #26	IL1RL1 (ENSCAFG00020010606) #27	IL18R1 (ENSCAFG00020010597) #28	IL18RAP (ENSCAFG00020010569) #29	ENSCAFG00020010566	SLC9A4 (ENSCAFG00020010554) #30	SLC9A2 (ENSCAFG00020010536) #31	MFSD9 (ENSCAFG00020010533) #32	TMEM182 (ENSCAFG00020010526) #33	POU3F3 (ENSCAFG00020010510)	MRPS9 (ENSCAFG00020010507) #35	GPR45 (ENSCAFG00020010496) #36	TGFBRAP1 (ENSCAFG00020010461) #37
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Mustelinae	ANCESTRAL SPECIES	103	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
American mink	MODERN SPECIES	297						LONRF2 (ENSNVIG00000020753) #9	CHST10 (ENSNVIG00000020744) #10	PDCL3 (ENSNVIG00000020724) #13	NPAS2 (ENSNVIG00000020699) #14	ENSNVIG00000020669 ##16	TBC1D8 (ENSNVIG00000020651) #17	CNOT11 (ENSNVIG00000020632) #18	RNF149 (ENSNVIG00000020604) #19	CREG2 (ENSNVIG00000020592)	RFX8 (ENSNVIG00000020529) #21	MAP4K4 (ENSNVIG00000019570) #22	IL1R2 (ENSNVIG00000019502) #23	IL1R1 (ENSNVIG00000019450) #25	IL1RL2 (ENSNVIG00000019402) #26	IL1RL1 (ENSNVIG00000019363) #27	IL18R1 (ENSNVIG00000019312) #28	IL18RAP (ENSNVIG00000019282) #29	SLC9A4 (ENSNVIG00000019260) #30
Ferret	MODERN SPECIES	199	EIF5B (ENSMPUG00000012068)	REV1 (ENSMPUG00000012079) #7	AFF3 (ENSMPUG00000012091) #8	LONRF2 (ENSMPUG00000012102) #9	CHST10 (ENSMPUG00000012105) #10	ENSMPUG00000012108	NMS (ENSMPUG00000012109) #12	PDCL3 (ENSMPUG00000012114) #13	NPAS2 (ENSMPUG00000012117) #14	ENSMPUG00000012197 ##16	TBC1D8 (ENSMPUG00000012202) #17	CNOT11 (ENSMPUG00000012207) #18	RNF149 (ENSMPUG00000012210) #19	CREG2 (ENSMPUG00000012215)	RFX8 (ENSMPUG00000012220) #21	MAP4K4 (ENSMPUG00000012229) #22	IL1R2 (ENSMPUG00000012235) #23	IL1R1 (ENSMPUG00000012240) #25	IL1RL2 (ENSMPUG00000012246) #26	IL1RL1 (ENSMPUG00000012260) #27	IL18R1 (ENSMPUG00000012264) #28	IL18RAP (ENSMPUG00000012268) #29
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.h #8	ENSGT00950000182974.a.a.a.b.g #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Giant Panda	MODERN SPECIES	14	TXNDC9 (ENSAMEG00000013310)	ENSAMEG00000013269	REV1 (ENSAMEG00000013212) #7	AFF3 (ENSAMEG00000013204) #8	LONRF2 (ENSAMEG00000015676) #9	CHST10 (ENSAMEG00000015665) #10	ENSAMEG00000030016 #12	PDCL3 (ENSAMEG00000015651) #13	NPAS2 (ENSAMEG00000027580) #14	RPL31 (ENSAMEG00000015647) ##16	TBC1D8 (ENSAMEG00000015593) #17	CNOT11 (ENSAMEG00000015585) #18	RNF149 (ENSAMEG00000015580) #19	CREG2 (ENSAMEG00000015573)	RFX8 (ENSAMEG00000015570) #21	MAP4K4 (ENSAMEG00000015519) #22	IL1R2 (ENSAMEG00000013088) #23	ENSAMEG00000026113	IL1R1 (ENSAMEG00000013113) #25	IL1RL2 (ENSAMEG00000013150) #26	IL1RL1 (ENSAMEG00000013160) #27	IL18RAP (ENSAMEG00000013197) #29	SLC9A4 (ENSAMEG00000013201) #30	SLC9A2 (ENSAMEG00000013210) #31	MFSD9 (ENSAMEG00000013239) #32	TMEM182 (ENSAMEG00000030392) #33	ENSAMEG00000013253	MRPS9 (ENSAMEG00000013254) #35	GPR45 (ENSAMEG00000020174) #36	C2orf49 (ENSAMEG00000013291)	TGFBRAP1 (ENSAMEG00000013278) #37
Ursus	ANCESTRAL SPECIES	174															ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00950000183375	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Polar bear	MODERN SPECIES	217															RFX8 (ENSUMAG00000021968) #21	MAP4K4 (ENSUMAG00000021065) #22	IL1R2 (ENSUMAG00000020886) #23	ENSUMAG00000020881	IL1R1 (ENSUMAG00000020879) #25	IL1RL2 (ENSUMAG00000020867) #26	IL1RL1 (ENSUMAG00000020858) #27	IL18R1 (ENSUMAG00000020854) #28	IL18RAP (ENSUMAG00000020848) #29	SLC9A4 (ENSUMAG00000020834) #30	SLC9A2 (ENSUMAG00000020812) #31	TMEM182 (ENSUMAG00000020805) #33	MRPS9 (ENSUMAG00000020795) #35	TGFBRAP1 (ENSUMAG00000020783) #37	C2orf49 (ENSUMAG00000020770)	FHL2 (ENSUMAG00000020766)	NCK2 (ENSUMAG00000020756)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	747																ENSUAMG00000026769 #22
American black bear	MODERN SPECIES	746																MAP4K4 (ENSUAMG00000024855) #22
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Chiroptera	ANCESTRAL SPECIES	47	ENSGT00390000017614.j	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Megabat	MODERN SPECIES	2377																MAP4K4 (ENSPVAG00000006909) #22
Microchiroptera	ANCESTRAL SPECIES	49	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Greater horseshoe bat	MODERN SPECIES	4	MRPL30 (ENSRFEG00010021991)	LYG1 (ENSRFEG00010021987)	TXNDC9 (ENSRFEG00010021985)	EIF5B (ENSRFEG00010021979)	REV1 (ENSRFEG00010021974) #7	AFF3 (ENSRFEG00010021968) #8	CHST10 (ENSRFEG00010021958) #10	PDCL3 (ENSRFEG00010021952) #13	NPAS2 (ENSRFEG00010021944) #14	ENSRFEG00010021934 ##16	TBC1D8 (ENSRFEG00010021926) #17	CNOT11 (ENSRFEG00010021917) #18	RNF149 (ENSRFEG00010021913) #19	CREG2 (ENSRFEG00010021909)	RFX8 (ENSRFEG00010021895) #21	MAP4K4 (ENSRFEG00010021830) #22	IL1R2 (ENSRFEG00010021789) #23	IL1R1 (ENSRFEG00010021779) #25	IL1RL1 (ENSRFEG00010021764) #27	ENSRFEG00010021759	IL18RAP (ENSRFEG00010021752) #29	SLC9A4 (ENSRFEG00010021742) #30	SLC9A2 (ENSRFEG00010021729) #31	MFSD9 (ENSRFEG00010021723) #32	TMEM182 (ENSRFEG00010021717) #33	MRPS9 (ENSRFEG00010021700) #35	GPR45 (ENSRFEG00010021695) #36	ENSRFEG00010021688	TGFBRAP1 (ENSRFEG00010021674) #37	C2orf49 (ENSRFEG00010021666)
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1327												ENKUR (ENSMLUG00000007962)	THNSL1 (ENSMLUG00000007989)	ENSMLUG00000026194	GPR158 (ENSMLUG00000004392)	ENSMLUG00000027318 #22
Microbat	MODERN SPECIES	1262												ENSMLUG00000011562	TMEM182 (ENSMLUG00000012672) #33	MFSD9 (ENSMLUG00000012654) #32	RFX8 (ENSMLUG00000017785) #21	MAP4K4 (ENSMLUG00000005727) #22	IL1R2 (ENSMLUG00000008750) #23
Equus	ANCESTRAL SPECIES	7	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Donkey	MODERN SPECIES	26	EIF5B (ENSEASG00005018269)	REV1 (ENSEASG00005018273) #7	AFF3 (ENSEASG00005018275) #8	ENSEASG00005018278	LONRF2 (ENSEASG00005018280) #9	CHST10 (ENSEASG00005018281) #10	ENSEASG00005037836 #12	PDCL3 (ENSEASG00005018283) #13	NPAS2 (ENSEASG00005018286) #14	ENSEASG00005018290 #16	TBC1D8 (ENSEASG00005018292) #17	CNOT11 (ENSEASG00005018296) #18	RNF149 (ENSEASG00005018302) #19	CREG2 (ENSEASG00005018303)	RFX8 (ENSEASG00005018305) #21	MAP4K4 (ENSEASG00005018659) #22	IL1R2 (ENSEASG00005022037) #23	IL1R1 (ENSEASG00005022039) #25	IL1RL2 (ENSEASG00005022043) #26	IL1RL1 (ENSEASG00005022045) #27	IL18R1 (ENSEASG00005022053) #28	IL18RAP (ENSEASG00005022061) #29	SLC9A4 (ENSEASG00005022063) #30	SLC9A2 (ENSEASG00005022066) #31	TMEM182 (ENSEASG00005022068) #33	MFSD9 (ENSEASG00005038665) #32	ENSEASG00005035021	MRPS9 (ENSEASG00005017804) #35	ENSEASG00005024307 #36	TGFBRAP1 (ENSEASG00005017799) #37	C2orf49 (ENSEASG00005017798)
Horse	DUPLICATION
Horse	MODERN SPECIES	286																ENSECAG00000048989 #22
Horse	MODERN SPECIES	6	ENSECAG00000054214	ENSECAG00000044204	LONRF2 (ENSECAG00000020030) #9	CHST10 (ENSECAG00000017766) #10	NMS (ENSECAG00000017654) #12	PDCL3 (ENSECAG00000015752) #13	NPAS2 (ENSECAG00000000171) #14	ENSECAG00000048409 #15	ENSECAG00000050251	RPL31 (ENSECAG00000024079) #16	TBC1D8 (ENSECAG00000012024) #17	CNOT11 (ENSECAG00000011967) #18	RNF149 (ENSECAG00000011545) #19	CREG2 (ENSECAG00000010700)	RFX8 (ENSECAG00000008397) #21	MAP4K4 (ENSECAG00000008730) #22	IL1R2 (ENSECAG00000000288) #23	IL1R1 (ENSECAG00000016394) #25	IL1RL2 (ENSECAG00000011940) #26	IL1RL1 (ENSECAG00000009248) #27	IL18RAP (ENSECAG00000000214) #29	SLC9A4 (ENSECAG00000046965) #30	SLC9A2 (ENSECAG00000020613) #31	MFSD9 (ENSECAG00000019151) #32	TMEM182 (ENSECAG00000028489) #33	POU3F3 (ENSECAG00000015143)	MRPS9 (ENSECAG00000011157) #35	GPR45 (ENSECAG00000006780) #36	TGFBRAP1 (ENSECAG00000007311) #37	C15H2orf49 (ENSECAG00000007267)	FHL2 (ENSECAG00000022203)
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Camelidae	ANCESTRAL SPECIES	56	ENSGT00390000017614.i	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.b.b.a.b.a ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a.b #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Arabian camel	MODERN SPECIES	20	LYG2 (ENSCDRG00005017902)	TXNDC9 (ENSCDRG00005017853)	EIF5B (ENSCDRG00005017819)	REV1 (ENSCDRG00005017730) #7	LONRF2 (ENSCDRG00005017680) #9	CHST10 (ENSCDRG00005017620) #10	PDCL3 (ENSCDRG00005017591) #13	NPAS2 (ENSCDRG00005017274) #14	ENSCDRG00005017146 ##16	TBC1D8 (ENSCDRG00005017001) #17	CNOT11 (ENSCDRG00005016946) #18	RNF149 (ENSCDRG00005016913) #19	ENSCDRG00005016876	CREG2 (ENSCDRG00005016858)	RFX8 (ENSCDRG00005016685) #21	MAP4K4 (ENSCDRG00005005064) #22	IL1R2 (ENSCDRG00005004827) #23	IL1R1 (ENSCDRG00005004754) #25	IL1RL2 (ENSCDRG00005004695) #26	IL1RL1 (ENSCDRG00005004642) #27	ENSCDRG00005004605 #28	IL18R1 (ENSCDRG00005004590) #28	IL18RAP (ENSCDRG00005004542) #29	SLC9A4 (ENSCDRG00005004482) #30	SLC9A2 (ENSCDRG00005004418) #31	MFSD9 (ENSCDRG00005004383) #32	TMEM182 (ENSCDRG00005004295) #33	MRPS9 (ENSCDRG00005004005) #35	TGFBRAP1 (ENSCDRG00005003872) #37	C2orf49 (ENSCDRG00005003782)	FHL2 (ENSCDRG00005003681)
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Cetacea	ANCESTRAL SPECIES	16	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.a #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00900000143808	ENSGT00390000011204.i #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.a #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00950000183128.B.hb.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.i #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.a #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00950000183128.B.hb.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.i #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00390000017614.j	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.a #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020.a #19	ENSGT00390000005914.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.i #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295.a #13	ENSGT00940000166403.b.b	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020.a #19	ENSGT00390000005914.b	ENSGT00950000183128.B.hb.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204.i #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Beluga whale	MODERN SPECIES	35	EIF5B (ENSDLEG00000001347)	REV1 (ENSDLEG00000001309) #7	AFF3 (ENSDLEG00000001264) #8	LONRF2 (ENSDLEG00000001228) #9	CHST10 (ENSDLEG00000001204) #10	PDCL3 (ENSDLEG00000001180) #13	ENSDLEG00000001171	NPAS2 (ENSDLEG00000001128) #14	RPL31 (ENSDLEG00000001096) #16	TBC1D8 (ENSDLEG00000001036) #17	ENSDLEG00000001007	CNOT11 (ENSDLEG00000000991) #18	RNF149 (ENSDLEG00000000967) #19	CREG2 (ENSDLEG00000000955)	ENSDLEG00000000933	MAP4K4 (ENSDLEG00000000765) #22	IL1R2 (ENSDLEG00000000699) #23	IL1R1 (ENSDLEG00000000603) #25	IL1RL2 (ENSDLEG00000000517) #26	IL1RL1 (ENSDLEG00000000477) #27	IL18R1 (ENSDLEG00000000451) #28	IL18RAP (ENSDLEG00000000416) #29	SLC9A4 (ENSDLEG00000000373) #30	SLC9A2 (ENSDLEG00000000339) #31	TMEM182 (ENSDLEG00000000313) #33	POU3F3 (ENSDLEG00000000279)	MRPS9 (ENSDLEG00000000254) #35	GPR45 (ENSDLEG00000000138) #36	TGFBRAP1 (ENSDLEG00000006808) #37	CUNH2orf49 (ENSDLEG00000006801)	FHL2 (ENSDLEG00000006792)
Narwhal	MODERN SPECIES	305	EIF5B (ENSMMNG00015019188)	REV1 (ENSMMNG00015019156) #7	AFF3 (ENSMMNG00015019041) #8	LONRF2 (ENSMMNG00015018929) #9	CHST10 (ENSMMNG00015018890) #10	NMS (ENSMMNG00015018853) #12	ENSMMNG00015018824 #13	ENSMMNG00015018811	NPAS2 (ENSMMNG00015018743) #14	ENSMMNG00015018686 ##16	TBC1D8 (ENSMMNG00015018656) #17	CNOT11 (ENSMMNG00015018621) #18	ENSMMNG00015018578 #19	CREG2 (ENSMMNG00015018535)	ENSMMNG00015018517	MAP4K4 (ENSMMNG00015018426) #22	IL1R2 (ENSMMNG00015018361) #23	ENSMMNG00015018259 #25	IL1RL2 (ENSMMNG00015018231) #26	IL1RL1 (ENSMMNG00015018134) #27	IL18R1 (ENSMMNG00015018059) #28	IL18RAP (ENSMMNG00015018031) #29	SLC9A4 (ENSMMNG00015017997) #30	SLC9A2 (ENSMMNG00015017927) #31	TMEM182 (ENSMMNG00015017864) #33	MRPS9 (ENSMMNG00015017837) #35	GPR45 (ENSMMNG00015017827) #36	TGFBRAP1 (ENSMMNG00015017793) #37	C2orf49 (ENSMMNG00015017759)	FHL2 (ENSMMNG00015017708)	NCK2 (ENSMMNG00015017679)
Vaquita	MODERN SPECIES	4	ENSPSNG00000007529	EIF5B (ENSPSNG00000007568)	REV1 (ENSPSNG00000007630) #7	AFF3 (ENSPSNG00000007712) #8	LONRF2 (ENSPSNG00000007991) #9	CHST10 (ENSPSNG00000008016) #10	ENSPSNG00000008033 #12	PDCL3 (ENSPSNG00000008086) #13	ENSPSNG00000008121	NPAS2 (ENSPSNG00000008150) #14	TBC1D8 (ENSPSNG00000008508) #17	CNOT11 (ENSPSNG00000008557) #18	ENSPSNG00000008577	ENSPSNG00000008607 #19	CREG2 (ENSPSNG00000008650)	MAP4K4 (ENSPSNG00000008803) #22	IL1R2 (ENSPSNG00000008975) #23	IL1R1 (ENSPSNG00000009010) #25	IL1RL2 (ENSPSNG00000009083) #26	IL1RL1 (ENSPSNG00000009203) #27	IL18R1 (ENSPSNG00000009248) #28	IL18RAP (ENSPSNG00000009292) #29	SLC9A4 (ENSPSNG00000009337) #30	SLC9A2 (ENSPSNG00000009398) #31	TMEM182 (ENSPSNG00000009492) #33	ENSPSNG00000009638	POU3F3 (ENSPSNG00000009683)	MRPS9 (ENSPSNG00000009700) #35	GPR45 (ENSPSNG00000009739) #36	TGFBRAP1 (ENSPSNG00000009765) #37	C2orf49 (ENSPSNG00000009836)
Dolphin	MODERN SPECIES	4836																MAP4K4 (ENSTTRG00000016919) #22
Sperm whale	MODERN SPECIES	3	REV1 (ENSPCTG00005010733) #7	AFF3 (ENSPCTG00005010804) #8	LONRF2 (ENSPCTG00005011056) #9	CHST10 (ENSPCTG00005011201) #10	PDCL3 (ENSPCTG00005011242) #13	ENSPCTG00005011279 #14	ENSPCTG00005011296	TBC1D8 (ENSPCTG00005011332) #17	RPL31 (ENSPCTG00005011533) ##16	CNOT11 (ENSPCTG00005011672) #18	ENSPCTG00005011743	RNF149 (ENSPCTG00005011779) #19	CREG2 (ENSPCTG00005011879)	RFX8 (ENSPCTG00005011936) #21	ENSPCTG00005012101	MAP4K4 (ENSPCTG00005012177) #22	IL1R2 (ENSPCTG00005012415) #23	IL1R1 (ENSPCTG00005012574) #25	IL1RL2 (ENSPCTG00005012665) #26	IL1RL1 (ENSPCTG00005012745) #27	IL18R1 (ENSPCTG00005012823) #28	IL18RAP (ENSPCTG00005012964) #29	SLC9A4 (ENSPCTG00005013259) #30	SLC9A2 (ENSPCTG00005013439) #31	ENSPCTG00005013632	TMEM182 (ENSPCTG00005013706) #33	POU3F3 (ENSPCTG00005013961)	MRPS9 (ENSPCTG00005013984) #35	GPR45 (ENSPCTG00005014038) #36	TGFBRAP1 (ENSPCTG00005014059) #37	C12H2orf49 (ENSPCTG00005014133)
Blue whale	MODERN SPECIES	4	TXNDC9 (ENSBMSG00010013808)	EIF5B (ENSBMSG00010013793)	REV1 (ENSBMSG00010013763) #7	LONRF2 (ENSBMSG00010013677) #9	CHST10 (ENSBMSG00010013659) #10	NMS (ENSBMSG00010013648) #12	ENSBMSG00010013633 #13	NPAS2 (ENSBMSG00010013617) #14	RPL31 (ENSBMSG00010013601) ##16	TBC1D8 (ENSBMSG00010013544) #17	CNOT11 (ENSBMSG00010013479) #18	RNF149 (ENSBMSG00010013456) #19	CREG2 (ENSBMSG00010013438)	RFX8 (ENSBMSG00010013394) #21	ENSBMSG00010013376	MAP4K4 (ENSBMSG00010013309) #22	IL1R2 (ENSBMSG00010013260) #23	ENSBMSG00010013232	ENSBMSG00010013219 #25	IL1RL2 (ENSBMSG00010013205) #26	IL1RL1 (ENSBMSG00010022330) #27	IL18R1 (ENSBMSG00010022320) #28	IL18RAP (ENSBMSG00010022313) #29	SLC9A4 (ENSBMSG00010022308) #30	SLC9A2 (ENSBMSG00010022304) #31	ENSBMSG00010022301	TMEM182 (ENSBMSG00010022296) #33	POU3F3 (ENSBMSG00010022291)	ENSBMSG00010022288	ENSBMSG00010022284 #35	ENSBMSG00010022281 #36
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00960000186941 #15	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Yarkand deer	MODERN SPECIES	2	AFF3 (ENSCHYG00000010762) #8	ENSCHYG00000011108	ENSCHYG00000011143 #9	CHST10 (ENSCHYG00000011261) #10	NMS (ENSCHYG00000011359) #12	PDCL3 (ENSCHYG00000011488) #13	NPAS2 (ENSCHYG00000011537) #14	ENSCHYG00000011833 ##16	TBC1D8 (ENSCHYG00000011938) #17	ENSCHYG00000012198 #15	CNOT11 (ENSCHYG00000012215) #18	RNF149 (ENSCHYG00000012281) #19	CREG2 (ENSCHYG00000012391)	RFX8 (ENSCHYG00000012449) #21	ENSCHYG00000012737	MAP4K4 (ENSCHYG00000012853) #22	IL1R2 (ENSCHYG00000014817) #23	IL1R1 (ENSCHYG00000015042) #25	IL1RL2 (ENSCHYG00000015248) #26	IL1RL1 (ENSCHYG00000015743) #27	IL18R1 (ENSCHYG00000015824) #28	IL18RAP (ENSCHYG00000015955) #29	SLC9A4 (ENSCHYG00000016105) #30	SLC9A2 (ENSCHYG00000016251) #31	MFSD9 (ENSCHYG00000016403) #32	TMEM182 (ENSCHYG00000016473) #33	ENSCHYG00000016649	MRPS9 (ENSCHYG00000016692) #35	GPR45 (ENSCHYG00000016902) #36	TGFBRAP1 (ENSCHYG00000016916) #37	ENSCHYG00000017002
Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00960000186941 #15	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00960000186941 #15	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00960000186941 #15	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Goat	MODERN SPECIES	2	REV1 (ENSCHIG00000012748) #7	AFF3 (ENSCHIG00000026653) #8	LONRF2 (ENSCHIG00000016195) #9	CHST10 (ENSCHIG00000019507) #10	NMS (ENSCHIG00000009642) #12	PDCL3 (ENSCHIG00000013469) #13	NPAS2 (ENSCHIG00000023402) #14	ENSCHIG00000010413	RPL31 (ENSCHIG00000023850) ##16	TBC1D8 (ENSCHIG00000023795) #17	ENSCHIG00000007252 #15	CNOT11 (ENSCHIG00000026686) #18	RNF149 (ENSCHIG00000024069) #19	CREG2 (ENSCHIG00000010213)	RFX8 (ENSCHIG00000011060) #21	MAP4K4 (ENSCHIG00000018604) #22	IL1R2 (ENSCHIG00000024086) #23	IL1R1 (ENSCHIG00000013024) #25	IL1RL2 (ENSCHIG00000025961) #26	IL1RL1 (ENSCHIG00000017390) #27	IL18R1 (ENSCHIG00000009915) #28	IL18RAP (ENSCHIG00000019718) #29	SLC9A4 (ENSCHIG00000003162) #30	SLC9A2 (ENSCHIG00000017048) #31	MFSD9 (ENSCHIG00000024665) #32	TMEM182 (ENSCHIG00000021627) #33	POU3F3 (ENSCHIG00000010081)	MRPS9 (ENSCHIG00000022475) #35	ENSCHIG00000025798	GPR45 (ENSCHIG00000010870) #36	TGFBRAP1 (ENSCHIG00000015202) #37
Rambouillet Sheep	MODERN SPECIES	19	TSGA10 (ENSOARG00020013054)	C2orf15 (ENSOARG00020013004)	MITD1 (ENSOARG00020012845)	MRPL30 (ENSOARG00020012811)	LYG2 (ENSOARG00020012789)	ENSOARG00020012666 #9	CHST10 (ENSOARG00020012569) #10	PDCL3 (ENSOARG00020012507) #13	NPAS2 (ENSOARG00020012376) #14	RPL31 (ENSOARG00020012320) #16	TBC1D8 (ENSOARG00020011910) #17	CNOT11 (ENSOARG00020011860) #18	RNF149 (ENSOARG00020011743) #19	CREG2 (ENSOARG00020011676)	RFX8 (ENSOARG00020011330) #21	MAP4K4 (ENSOARG00020003040) #22	IL1R2 (ENSOARG00020002697) #23	IL1RL2 (ENSOARG00020002664) #26	IL1RL1 (ENSOARG00020002640) #27	IL18R1 (ENSOARG00020002611) #28	IL18RAP (ENSOARG00020002600) #29	SLC9A4 (ENSOARG00020002556) #30	SLC9A2 (ENSOARG00020002529) #31	ENSOARG00020002475	POU3F3 (ENSOARG00020002461)	MRPS9 (ENSOARG00020002447) #35	GPR45 (ENSOARG00020002442) #36	TGFBRAP1 (ENSOARG00020002401) #37	C2orf49 (ENSOARG00020002379)	FHL2 (ENSOARG00020002357)	ENSOARG00020002342
Bovinae	ANCESTRAL SPECIES	4	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
American bison	DUPLICATION
American bison	MODERN SPECIES	3321	DNAJC1 (ENSBBBG00000014621)	ENSBBBG00000014606	COMMD3 (ENSBBBG00000014594)	BMI1 (ENSBBBG00000014582)	SPAG6 (ENSBBBG00000007604)	PIP4K2A (ENSBBBG00000003407)	ARMC3 (ENSBBBG00000003388)	MSRB2 (ENSBBBG00000014479)	PTF1A (ENSBBBG00000014471)	KIAA1217 (ENSBBBG00000014434)	ARHGAP21 (ENSBBBG00000003208)	PRTFDC1 (ENSBBBG00000014140)	ENKUR (ENSBBBG00000014121)	THNSL1 (ENSBBBG00000003174)	GPR158 (ENSBBBG00000008747)	ENSBBBG00000014091 #22	GAD2 (ENSBBBG00000014080)	ENSBBBG00000003133	OPTN (ENSBBBG00000014045)	MCM10 (ENSBBBG00000003086)	UCMA (ENSBBBG00000008745)	ENSBBBG00000013955	ENSBBBG00000003045	SEPHS1 (ENSBBBG00000013939)	ENSBBBG00000003021	PRPF18 (ENSBBBG00000013908)	FRMD4A (ENSBBBG00000013895)	FAM107B (ENSBBBG00000013875)	CDNF (ENSBBBG00000013850)	HSPA14 (ENSBBBG00000002971)	SUV39H2 (ENSBBBG00000013820)
American bison	MODERN SPECIES	3198			DHRS9 (ENSBBBG00000014077)	LRP2 (ENSBBBG00000014043)	BBS5 (ENSBBBG00000003014)	KLHL41 (ENSBBBG00000002995)	FASTKD1 (ENSBBBG00000002990)	PPIG (ENSBBBG00000002973)	CFAP210 (ENSBBBG00000013801)	PHOSPHO2 (ENSBBBG00000002952)	KLHL23 (ENSBBBG00000013780)	SSB (ENSBBBG00000002948)	METTL5 (ENSBBBG00000013751)	UBR3 (ENSBBBG00000013716)	ENSBBBG00000013654	ENSBBBG00000008906 #22
American bison	MODERN SPECIES	3359	TXNDC9 (ENSBBBG00000000341)	EIF5B (ENSBBBG00000000362)	REV1 (ENSBBBG00000000447) #7	AFF3 (ENSBBBG00000023141) #8	ENSBBBG00000023006 #9	CHST10 (ENSBBBG00000022987) #10	NMS (ENSBBBG00000022959) #12	PDCL3 (ENSBBBG00000022953) #13	NPAS2 (ENSBBBG00000022942) #14	ENSBBBG00000022904 #16	TBC1D8 (ENSBBBG00000022871) #17	CNOT11 (ENSBBBG00000022819) #18	RNF149 (ENSBBBG00000022804) #19	CREG2 (ENSBBBG00000006004)	RFX8 (ENSBBBG00000008792) #21	MAP4K4 (ENSBBBG00000022681) #22	IL1R2 (ENSBBBG00000021615) #23	IL1R1 (ENSBBBG00000021590) #25	IL1RL2 (ENSBBBG00000021531) #26	IL1RL1 (ENSBBBG00000021510) #27	IL18R1 (ENSBBBG00000008404) #28	IL18RAP (ENSBBBG00000021455) #29	SLC9A4 (ENSBBBG00000021388) #30	SLC9A2 (ENSBBBG00000021364) #31	ENSBBBG00000008785	TMEM182 (ENSBBBG00000021321) #33	ENSBBBG00000021300	MRPS9 (ENSBBBG00000021295) #35	GPR45 (ENSBBBG00000021287) #36	TGFBRAP1 (ENSBBBG00000007633) #37	C2orf49 (ENSBBBG00000021257)
Bos	ANCESTRAL SPECIES	5	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.b.b.a	ENSGT00940000163243	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000162583	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.b.b.a	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Hybrid Bos Indicus	MODERN SPECIES	2	ENSBIXG00005013235	ENSBIXG00005013227	ENSBIXG00005013219 #9	CHST10 (ENSBIXG00005013201) #10	NMS (ENSBIXG00005013175) #12	PDCL3 (ENSBIXG00005005388) #13	ENSBIXG00005013138	NPAS2 (ENSBIXG00005007752) #14	ENSBIXG00005013079	ENSBIXG00005013066 #16	TBC1D8 (ENSBIXG00005001459) #17	CNOT11 (ENSBIXG00005012899) #18	RNF149 (ENSBIXG00005012860) #19	CREG2 (ENSBIXG00005001420)	RFX8 (ENSBIXG00005001409) #21	MAP4K4 (ENSBIXG00005012631) #22	IL1R2 (ENSBIXG00005012513) #23	IL1R1 (ENSBIXG00005012489) #25	IL1RL2 (ENSBIXG00005006426) #26	IL1RL1 (ENSBIXG00005012422) #27	IL18R1 (ENSBIXG00005012403) #28	IL18RAP (ENSBIXG00005001308) #29	SLC9A4 (ENSBIXG00005001305) #30	SLC9A2 (ENSBIXG00005005827) #31	MFSD9 (ENSBIXG00005012287) #32	TMEM182 (ENSBIXG00005012268) #33	POU3F3 (ENSBIXG00005012117)	MRPS9 (ENSBIXG00005012091) #35	GPR45 (ENSBIXG00005001249) #36	TGFBRAP1 (ENSBIXG00005001243) #37	ENSBIXG00005001221
Cow	MODERN SPECIES	2	MRPL30 (ENSBTAG00000038949)	TXNDC9 (ENSBTAG00000004544)	EIF5B (ENSBTAG00000034255)	REV1 (ENSBTAG00000043999) #7	AFF3 (ENSBTAG00000012449) #8	CHST10 (ENSBTAG00000004328) #10	NMS (ENSBTAG00000034184) #12	PDCL3 (ENSBTAG00000009962) #13	NPAS2 (ENSBTAG00000019697) #14	TBC1D8 (ENSBTAG00000025898) #17	CNOT11 (ENSBTAG00000008267) #18	RNF149 (ENSBTAG00000008269) #19	CREG2 (ENSBTAG00000021161)	RFX8 (ENSBTAG00000033998) #21	ENSBTAG00000054755	MAP4K4 (ENSBTAG00000013023) #22	IL1R2 (ENSBTAG00000006343) #23	IL1R1 (ENSBTAG00000005273) #25	IL1RL2 (ENSBTAG00000005704) #26	IL1RL1 (ENSBTAG00000018571) #27	IL18R1 (ENSBTAG00000001034) #28	IL18RAP (ENSBTAG00000033748) #29	SLC9A4 (ENSBTAG00000024075) #30	SLC9A2 (ENSBTAG00000001706) #31	MFSD9 (ENSBTAG00000001714) #32	TMEM182 (ENSBTAG00000038462) #33	POU3F3 (ENSBTAG00000050523)	MRPS9 (ENSBTAG00000006150) #35	GPR45 (ENSBTAG00000048142) #36	TGFBRAP1 (ENSBTAG00000021731) #37	C11H2orf49 (ENSBTAG00000012332)
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000163243	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT01100000263480.a.b.a.a.b.b.a.a	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2296																ENSBMUG00000002206 #22	GAD2 (ENSBMUG00000002171)	ENSBMUG00000002130	ENSBMUG00000002093
Wild yak	MODERN SPECIES	483															RFX8 (ENSBMUG00000006169) #21	MAP4K4 (ENSBMUG00000006599) #22	IL1R2 (ENSBMUG00000007587) #23	IL1R1 (ENSBMUG00000007612) #25
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	3	ABI1 (ENSBGRG00000014062)	PDSS1 (ENSBGRG00000014215)	CCNY (ENSBGRG00000014486)	CREM (ENSBGRG00000014601)	ENSBGRG00000014932	ENSBGRG00000016604	ENSBGRG00000019555	ENSBGRG00000019928	NEBL (ENSBGRG00000020572)	ENSBGRG00000021543	ENSBGRG00000021697	COMMD3 (ENSBGRG00000022691)	BMI1 (ENSBGRG00000022726)	ENSBGRG00000024687	ENSBGRG00000025471	ENSBGRG00000025641 #22	ENSBGRG00000025653	FZD8 (ENSBGRG00000010581)	ENSBGRG00000011835	ENSBGRG00000012765	PRPF18 (ENSBGRG00000012792)	ENSBGRG00000013679	ENSBGRG00000013757	MEIG1 (ENSBGRG00000015055)	ACBD7 (ENSBGRG00000015230)	ENSBGRG00000016221	ENSBGRG00000016312	ENSBGRG00000016342	ENSBGRG00000018950	VIM (ENSBGRG00000018970)	ENSBGRG00000022775
Domestic yak	MODERN SPECIES	28	ENSBGRG00000026836	REV1 (ENSBGRG00000026837) #7	AFF3 (ENSBGRG00000026841) #8	ENSBGRG00000026843	ENSBGRG00000026846 #10	NMS (ENSBGRG00000026847) #12	PDCL3 (ENSBGRG00000026849) #13	NPAS2 (ENSBGRG00000003623) #14	ENSBGRG00000003883	ENSBGRG00000003902 #16	TBC1D8 (ENSBGRG00000004001) #17	CNOT11 (ENSBGRG00000004100) #18	RNF149 (ENSBGRG00000004146) #19	CREG2 (ENSBGRG00000004222)	RFX8 (ENSBGRG00000004305) #21	MAP4K4 (ENSBGRG00000004440) #22	IL1R2 (ENSBGRG00000004837) #23	IL1R1 (ENSBGRG00000004895) #25	ENSBGRG00000004971	IL1RL2 (ENSBGRG00000004988) #26	IL1RL1 (ENSBGRG00000005024) #27	IL18R1 (ENSBGRG00000005129) #28	IL18RAP (ENSBGRG00000005200) #29	SLC9A4 (ENSBGRG00000005286) #30	SLC9A2 (ENSBGRG00000005356) #31	MFSD9 (ENSBGRG00000005489) #32	TMEM182 (ENSBGRG00000005547) #33	ENSBGRG00000005713	MRPS9 (ENSBGRG00000005733) #35	GPR45 (ENSBGRG00000005783) #36	TGFBRAP1 (ENSBGRG00000005800) #37
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1194	BMI1 (ENSMMSG00000010401)	SPAG6 (ENSMMSG00000009939)	PIP4K2A (ENSMMSG00000009845)	ENSMMSG00000009832	ARMC3 (ENSMMSG00000009602)	MSRB2 (ENSMMSG00000009568)	PTF1A (ENSMMSG00000009546)	OTUD1 (ENSMMSG00000009420)	KIAA1217 (ENSMMSG00000009308)	ARHGAP21 (ENSMMSG00000008987)	PRTFDC1 (ENSMMSG00000008847)	ENSMMSG00000008819	ENKUR (ENSMMSG00000008794)	THNSL1 (ENSMMSG00000008782)	GPR158 (ENSMMSG00000008659)	ENSMMSG00000008632 #22	ENSMMSG00000008510	GAD2 (ENSMMSG00000008371)	FZD8 (ENSMMSG00000008339)	OPTN (ENSMMSG00000008278)	MCM10 (ENSMMSG00000008245)	UCMA (ENSMMSG00000008183)	PHYH (ENSMMSG00000008109)	SEPHS1 (ENSMMSG00000008019)	ENSMMSG00000007973	PRPF18 (ENSMMSG00000007919)	FRMD4A (ENSMMSG00000007794)	ENSMMSG00000007764	FAM107B (ENSMMSG00000007738)	CDNF (ENSMMSG00000007698)	HSPA14 (ENSMMSG00000007632)
Siberian musk deer	MODERN SPECIES	245	EIF5B (ENSMMSG00000001949)	REV1 (ENSMMSG00000001921) #7	AFF3 (ENSMMSG00000001853) #8	ENSMMSG00000001804 #9	CHST10 (ENSMMSG00000001776) #10	NMS (ENSMMSG00000001744) #12	ENSMMSG00000001724 #13	ENSMMSG00000001713	NPAS2 (ENSMMSG00000001642) #14	ENSMMSG00000001578 #16	TBC1D8 (ENSMMSG00000001494) #17	CNOT11 (ENSMMSG00000001455) #18	RNF149 (ENSMMSG00000001408) #19	CREG2 (ENSMMSG00000001384)	RFX8 (ENSMMSG00000001356) #21	MAP4K4 (ENSMMSG00000001158) #22	IL1R2 (ENSMMSG00000001036) #23	IL1R1 (ENSMMSG00000000980) #25	IL1RL2 (ENSMMSG00000000923) #26	IL1RL1 (ENSMMSG00000000795) #27	IL18R1 (ENSMMSG00000000733) #28	IL18RAP (ENSMMSG00000000698) #29	SLC9A4 (ENSMMSG00000000659) #30	SLC9A2 (ENSMMSG00000000626) #31	MFSD9 (ENSMMSG00000000598) #32	TMEM182 (ENSMMSG00000000564) #33	ENSMMSG00000000543	POU3F3 (ENSMMSG00000000528)	MRPS9 (ENSMMSG00000000500) #35	GPR45 (ENSMMSG00000000484) #36	TGFBRAP1 (ENSMMSG00000000447) #37
Suina	ANCESTRAL SPECIES	50	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	48	COMMD3 (ENSCWAG00000006540)	BMI1 (ENSCWAG00000006472)	SPAG6 (ENSCWAG00000006200)	PIP4K2A (ENSCWAG00000006142)	ARMC3 (ENSCWAG00000005912)	MSRB2 (ENSCWAG00000005884)	PTF1A (ENSCWAG00000005861)	OTUD1 (ENSCWAG00000005832)	KIAA1217 (ENSCWAG00000004897)	ARHGAP21 (ENSCWAG00000003379)	ENSCWAG00000003369	PRTFDC1 (ENSCWAG00000003354)	ENKUR (ENSCWAG00000003334)	THNSL1 (ENSCWAG00000003329)	GPR158 (ENSCWAG00000003292)	ENSCWAG00000003264 #22	GAD2 (ENSCWAG00000003224)	APBB1IP (ENSCWAG00000003183)	PDSS1 (ENSCWAG00000003156)	ABI1 (ENSCWAG00000002988)	ACBD5 (ENSCWAG00000002902)	MASTL (ENSCWAG00000002823)	YME1L1 (ENSCWAG00000002781)	ENSCWAG00000002741	OPTN (ENSCWAG00000002673)	MCM10 (ENSCWAG00000002570)	UCMA (ENSCWAG00000002531)	PHYH (ENSCWAG00000002511)	SEPHS1 (ENSCWAG00000002484)	BEND7 (ENSCWAG00000002446)	PRPF18 (ENSCWAG00000002422)
Chacoan peccary	MODERN SPECIES	184	TXNDC9 (ENSCWAG00000001148)	EIF5B (ENSCWAG00000001187)	REV1 (ENSCWAG00000001226) #7	AFF3 (ENSCWAG00000001275) #8	LONRF2 (ENSCWAG00000001433) #9	CHST10 (ENSCWAG00000001461) #10	NMS (ENSCWAG00000001481) #12	PDCL3 (ENSCWAG00000001508) #13	NPAS2 (ENSCWAG00000001527) #14	ENSCWAG00000001562 ##16	TBC1D8 (ENSCWAG00000001592) #17	CNOT11 (ENSCWAG00000001646) #18	RNF149 (ENSCWAG00000001666) #19	CREG2 (ENSCWAG00000001676)	RFX8 (ENSCWAG00000001686) #21	MAP4K4 (ENSCWAG00000001762) #22	IL1R2 (ENSCWAG00000001985) #23	IL1R1 (ENSCWAG00000002017) #25	IL1RL2 (ENSCWAG00000002048) #26	IL1RL1 (ENSCWAG00000002096) #27	IL18R1 (ENSCWAG00000002161) #28	IL18RAP (ENSCWAG00000002187) #29	SLC9A4 (ENSCWAG00000002237) #30	SLC9A2 (ENSCWAG00000002265) #31	MFSD9 (ENSCWAG00000002292) #32	TMEM182 (ENSCWAG00000002304) #33	POU3F3 (ENSCWAG00000002326)	MRPS9 (ENSCWAG00000002345) #35	GPR45 (ENSCWAG00000002373) #36	TGFBRAP1 (ENSCWAG00000002382) #37	C2orf49 (ENSCWAG00000002401)
Pig	DUPLICATION
Pig	MODERN SPECIES	1	PIP4K2A (ENSSSCG00000011079)	ENSSSCG00000045344	ARMC3 (ENSSSCG00000011078)	MSRB2 (ENSSSCG00000011077)	PTF1A (ENSSSCG00000030662)	ENSSSCG00000058253	OTUD1 (ENSSSCG00000011076)	KIAA1217 (ENSSSCG00000011075)	ARHGAP21 (ENSSSCG00000011074)	ENSSSCG00000059535	ENSSSCG00000037690	PRTFDC1 (ENSSSCG00000028135)	ENKUR (ENSSSCG00000032929)	THNSL1 (ENSSSCG00000011071)	GPR158 (ENSSSCG00000038536)	ENSSSCG00000011059 #22	GAD2 (ENSSSCG00000011060)	APBB1IP (ENSSSCG00000030156)	PDSS1 (ENSSSCG00000011061)	ABI1 (ENSSSCG00000024127)	ACBD5 (ENSSSCG00000011064)	MASTL (ENSSSCG00000011065)	ENSSSCG00000011068	OPTN (ENSSSCG00000023247)	MCM10 (ENSSSCG00000035059)	UCMA (ENSSSCG00000038864)	PHYH (ENSSSCG00000039244)	SEPHS1 (ENSSSCG00000031659)	BEND7 (ENSSSCG00000032984)	PRPF18 (ENSSSCG00000026354)	FRMD4A (ENSSSCG00000011056)
Pig	MODERN SPECIES	11	TXNDC9 (ENSSSCG00000008181)	EIF5B (ENSSSCG00000008180)	REV1 (ENSSSCG00000008179) #7	ENSSSCG00000041855	AFF3 (ENSSSCG00000055832) #8	LONRF2 (ENSSSCG00000008176) #9	CHST10 (ENSSSCG00000008175) #10	PDCL3 (ENSSSCG00000033885) #13	NPAS2 (ENSSSCG00000008171) #14	ENSSSCG00000008170 #16	TBC1D8 (ENSSSCG00000008169) #17	CNOT11 (ENSSSCG00000008167) #18	RNF149 (ENSSSCG00000008168) #19	CREG2 (ENSSSCG00000008166)	RFX8 (ENSSSCG00000008165) #21	MAP4K4 (ENSSSCG00000008164) #22	IL1R2 (ENSSSCG00000028331) #23	IL1R1 (ENSSSCG00000008162) #25	ENSSSCG00000037359	IL1RL2 (ENSSSCG00000023550) #26	IL1RL1 (ENSSSCG00000032795) #27	IL18R1 (ENSSSCG00000008159) #28	IL18RAP (ENSSSCG00000008157) #29	SLC9A4 (ENSSSCG00000008155) #30	SLC9A2 (ENSSSCG00000008153) #31	MFSD9 (ENSSSCG00000038714) #32	TMEM182 (ENSSSCG00000008150) #33	ENSSSCG00000057831	POU3F3 (ENSSSCG00000022096)	MRPS9 (ENSSSCG00000028020) #35	GPR45 (ENSSSCG00000025772) #36
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00390000002220	ENSGT00950000183150.a.b	ENSGT00940000157564	ENSGT00940000158665	ENSGT00940000157232	ENSGT00390000002753	ENSGT00940000158859	ENSGT01030000234607.B	ENSGT00940000157954	ENSGT00730000111149	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063 #22	ENSGT00940000159309	ENSGT00940000160673	ENSGT00390000017846	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442	ENSGT00940000155963	ENSGT00390000007069	ENSGT00940000157735	ENSGT00940000160029	ENSGT00940000160127
Xenarthra	ANCESTRAL SPECIES	1245																ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26
Armadillo	MODERN SPECIES	3112																MAP4K4 (ENSDNOG00000006844) #22	IL1R2 (ENSDNOG00000048404) #23	IL1R1 (ENSDNOG00000007656) #25	IL1RL2 (ENSDNOG00000009374) #26
Sloth	MODERN SPECIES	6110																MAP4K4 (ENSCHOG00000009479) #22
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000002220	ENSGT00950000183150.a.b	ENSGT00940000157564	ENSGT00940000158665	ENSGT00940000157232	ENSGT00390000002753	ENSGT00940000158859	ENSGT01030000234607.B	ENSGT00940000157954	ENSGT00730000111149	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00940000159309	ENSGT00940000160673	ENSGT00390000017846	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442	ENSGT00940000155963	ENSGT00390000007069	ENSGT00940000157735	ENSGT00940000160029
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000002220	ENSGT00950000183150.a.b	ENSGT00940000157564	ENSGT00940000158665	ENSGT00940000157232	ENSGT00390000002753	ENSGT00940000158859	ENSGT01030000234607.B	ENSGT00940000157954	ENSGT00730000111149	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT00940000159309	ENSGT00940000160673	ENSGT00390000017846	ENSGT00940000155526	ENSGT00390000008686.d	ENSGT00950000182984.b.a.b	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442	ENSGT00940000155963	ENSGT00390000007069	ENSGT00940000157735	ENSGT00940000160029
Hyrax	MODERN SPECIES	5788																MAP4K4 (ENSPCAG00000002276) #22
Elephant	DUPLICATION
Elephant	MODERN SPECIES	301	G6PC2 (ENSLAFG00000006146)	ABCB11 (ENSLAFG00000006147)	DHRS9 (ENSLAFG00000007396)	LRP2 (ENSLAFG00000013646)	BBS5 (ENSLAFG00000009805)	KLHL41 (ENSLAFG00000009811)	FASTKD1 (ENSLAFG00000016410)	PPIG (ENSLAFG00000008181)	ENSLAFG00000027745	CFAP210 (ENSLAFG00000012564)	PHOSPHO2 (ENSLAFG00000020903)	KLHL23 (ENSLAFG00000015157)	ENSLAFG00000000867	METTL5 (ENSLAFG00000018044)	UBR3 (ENSLAFG00000021771)	ENSLAFG00000031946 #22	ENSLAFG00000002713	SP5 (ENSLAFG00000002720)	ENSLAFG00000002692	GAD1 (ENSLAFG00000002694)	GORASP2 (ENSLAFG00000005881)	TLK1 (ENSLAFG00000004201)	METTL8 (ENSLAFG00000003151)	DCAF17 (ENSLAFG00000003558)	CYBRD1 (ENSLAFG00000016525)	DYNC1I2 (ENSLAFG00000018517)	SLC25A12 (ENSLAFG00000018521)	HAT1 (ENSLAFG00000010213)	METAP1D (ENSLAFG00000008879)	DLX1 (ENSLAFG00000003551)	DLX2 (ENSLAFG00000003554)
Elephant	MODERN SPECIES	278	AFF3 (ENSLAFG00000012884) #8	ENSLAFG00000026678	LONRF2 (ENSLAFG00000005456) #9	CHST10 (ENSLAFG00000005461) #10	NMS (ENSLAFG00000029888) #12	PDCL3 (ENSLAFG00000021615) #13	ENSLAFG00000026504 ##16	NPAS2 (ENSLAFG00000016336) #14	ENSLAFG00000027873 ##16	TBC1D8 (ENSLAFG00000016341) #17	CNOT11 (ENSLAFG00000006411) #18	RNF149 (ENSLAFG00000030178) #19	ENSLAFG00000006644	CREG2 (ENSLAFG00000011751)	RFX8 (ENSLAFG00000011754) #21	MAP4K4 (ENSLAFG00000005765) #22	ENSLAFG00000013679 #23	ENSLAFG00000021985 #23	IL1R1 (ENSLAFG00000012677) #25	IL1RL2 (ENSLAFG00000012683) #26	IL1RL1 (ENSLAFG00000007804) #27	IL18R1 (ENSLAFG00000007809) #28	IL18RAP (ENSLAFG00000007815) #29	SLC9A4 (ENSLAFG00000011553) #30	SLC9A2 (ENSLAFG00000011557) #31	MFSD9 (ENSLAFG00000011208) #32	TMEM182 (ENSLAFG00000011215) #33	ENSLAFG00000027526	MRPS9 (ENSLAFG00000008097) #35	GPR45 (ENSLAFG00000010319) #36	TGFBRAP1 (ENSLAFG00000010322) #37
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00390000000367	ENSGT00950000183034.A	ENSGT00390000017898	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000155947	ENSGT00390000017040	ENSGT00940000154477	ENSGT00940000156324	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Diprotodontia	ANCESTRAL SPECIES	49	ENSGT00390000012239	ENSGT00390000000367	ENSGT00950000183034.A	ENSGT00390000017898	ENSGT01010000222287.B.b.a.a.a	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000155947	ENSGT00940000154477	ENSGT00940000156324	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Diprotodontia_a	ANCESTRAL SPECIES	47	ENSGT00390000000367	ENSGT00950000183034.A	ENSGT00390000017898	ENSGT01010000222287.B.b.a.a.a	ENSGT00390000010152.n	ENSGT00940000158913	ENSGT00950000182832.B	ENSGT00530000063353.a.b.b	ENSGT00940000155947	ENSGT00940000154477	ENSGT00940000156324	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.b #25	ENSGT01090000259985.b.a.b.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Common wonbat	MODERN SPECIES	1041	ENSVURG00010014786	ENSVURG00010014793	ENSVURG00010014797	GBE1 (ENSVURG00010014817)	ENSVURG00010014836	ENSVURG00010014848	ENSVURG00010014853	ROBO1 (ENSVURG00010014872)	ENSVURG00010014978	ROBO2 (ENSVURG00010015022)	CNOT11 (ENSVURG00010015327) #18	ENSVURG00010015341 #19	CREG2 (ENSVURG00010015348)	RFX8 (ENSVURG00010015354) #21	ENSVURG00010015368	MAP4K4 (ENSVURG00010015448) #22	ENSVURG00010016987	ENSVURG00010016992 #23
koala	MODERN SPECIES	29	ENSPCIG00000036325	ENSPCIG00000023117	LDLRAD1 (ENSPCIG00000023114)	TMEM59 (ENSPCIG00000023112)	ENSPCIG00000023107	CDCP2 (ENSPCIG00000031096)	ENSPCIG00000023102	MRPL37 (ENSPCIG00000023098)	SSBP3 (ENSPCIG00000023094)	ENSPCIG00000008690	ROBO2 (ENSPCIG00000027463)	CNOT11 (ENSPCIG00000016312) #18	ENSPCIG00000016308 #19	CREG2 (ENSPCIG00000016307)	RFX8 (ENSPCIG00000013097) #21	MAP4K4 (ENSPCIG00000013142) #22	ENSPCIG00000009335 #23	ENSPCIG00000006764	ENSPCIG00000018434 #25	ENSPCIG00000018435 #26	ENSPCIG00000018436 #27	ENSPCIG00000001399 #28	ENSPCIG00000001413 #29	SLC9A4 (ENSPCIG00000001448) #30	SLC9A2 (ENSPCIG00000001485) #31	MFSD9 (ENSPCIG00000034191) #32	TMEM182 (ENSPCIG00000001521) #33	ENSPCIG00000033918	ENSPCIG00000019202	POU3F3 (ENSPCIG00000019192)	MRPS9 (ENSPCIG00000016698) #35
Wallaby	MODERN SPECIES	8258																MAP4K4 (ENSMEUG00000016619) #22
Tasmanian devil	MODERN SPECIES	2	HTR1F (ENSSHAG00000023648)	ENSSHAG00000008747	CHMP2B (ENSSHAG00000023278)	ENSSHAG00000001836	ENSSHAG00000021081	ENSSHAG00000013236	ENSSHAG00000016491	ENSSHAG00000000936	ENSSHAG00000003799	ENSSHAG00000030581	ENSSHAG00000025373	ENSSHAG00000003760	ENSSHAG00000032388	ENSSHAG00000022641 #18	RNF149 (ENSSHAG00000007065) #19	MAP4K4 (ENSSHAG00000002416) #22	ENSSHAG00000002423 #23	IL1R1 (ENSSHAG00000005754) #25	ENSSHAG00000028997 #26	ENSSHAG00000007642 #27	ENSSHAG00000007987 #28	IL18RAP (ENSSHAG00000001935) #29	SLC9A4 (ENSSHAG00000003225) #30	SLC9A2 (ENSSHAG00000006905) #31	MFSD9 (ENSSHAG00000008326) #32	TMEM182 (ENSSHAG00000023226) #33	ENSSHAG00000002774	ENSSHAG00000017944	MRPS9 (ENSSHAG00000026898) #35	GPR45 (ENSSHAG00000018314) #36	ENSSHAG00000022684
Opossum	DUPLICATION
Opossum	MODERN SPECIES	7	ARMC3 (ENSMODG00000008994)	ENSMODG00000029535	MSRB2 (ENSMODG00000045397)	ENSMODG00000037006	PTF1A (ENSMODG00000008946)	ENSMODG00000028850	OTUD1 (ENSMODG00000008914)	ENSMODG00000039733	ENSMODG00000008903	ARHGAP21 (ENSMODG00000008781)	PRTFDC1 (ENSMODG00000008740)	ENKUR (ENSMODG00000008730)	THNSL1 (ENSMODG00000024109)	GPR158 (ENSMODG00000024111)	ENSMODG00000044147	ENSMODG00000008687 #22	ENSMODG00000028716	ENSMODG00000028877	ENSMODG00000027922	GAD2 (ENSMODG00000008626)	APBB1IP (ENSMODG00000008583)	ENSMODG00000036851	PDSS1 (ENSMODG00000008533)	ABI1 (ENSMODG00000008499)	ACBD5 (ENSMODG00000008472)	MASTL (ENSMODG00000008423)	YME1L1 (ENSMODG00000008389)	ENSMODG00000008258	RAB18 (ENSMODG00000008253)	MKX (ENSMODG00000008244)	ENSMODG00000008232
Opossum	MODERN SPECIES	6	RNF149 (ENSMODG00000001750) #19	CREG2 (ENSMODG00000036475)	ENSMODG00000045925	ENSMODG00000029094	ENSMODG00000049022	ENSMODG00000028572	ENSMODG00000042445	ENSMODG00000025181	ENSMODG00000007958	ENSMODG00000050607	ENSMODG00000025216	ENSMODG00000048748	ENSMODG00000002051	ENSMODG00000025200	RFX8 (ENSMODG00000025480) #21	MAP4K4 (ENSMODG00000002250) #22	ENSMODG00000002266	ENSMODG00000002293 #23	ENSMODG00000042076 #25	ENSMODG00000036695 #25	ENSMODG00000002351 #26	ENSMODG00000002368 #27	ENSMODG00000002385 #28	ENSMODG00000002401 #29	SLC9A4 (ENSMODG00000002416) #30	ENSMODG00000041133	SLC9A2 (ENSMODG00000002434) #31	MFSD9 (ENSMODG00000039237) #32	TMEM182 (ENSMODG00000002447) #33	ENSMODG00000042494	ENSMODG00000043109
Platypus	MODERN SPECIES	11	ENSOANG00000016066	ENSOANG00000039527	OLFM4 (ENSOANG00000037547)	ENSOANG00000048430	CNMD (ENSOANG00000010093)	SUGT1 (ENSOANG00000020356)	ELF1 (ENSOANG00000013391)	WBP4 (ENSOANG00000039659)	ENSOANG00000042040	ENSOANG00000050275	MTRF1 (ENSOANG00000003383)	CNOT11 (ENSOANG00000013148) #18	RNF149 (ENSOANG00000003086) #19	ENSOANG00000002853	ENSOANG00000016016	MAP4K4 (ENSOANG00000008236) #22	IL1R2 (ENSOANG00000008234) #23	IL1R1 (ENSOANG00000011165) #25	ENSOANG00000014837 #26	ENSOANG00000011164 #27	ENSOANG00000044038 #28	ENSOANG00000012240 #29	SLC9A4 (ENSOANG00000012242) #30	SLC9A2 (ENSOANG00000012243) #31	MFSD9 (ENSOANG00000012244) #32	TMEM182 (ENSOANG00000012245) #33	ENSOANG00000047201	ENSOANG00000039031	MRPS9 (ENSOANG00000012373) #35	GPR45 (ENSOANG00000047747) #36	TGFBRAP1 (ENSOANG00000010577) #37
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Episquamata	ANCESTRAL SPECIES	2	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000161561.j	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Laterata	ANCESTRAL SPECIES		ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000161561.j.e	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Common wall lizard	MODERN SPECIES	12	PDCL3 (ENSPMRG00000005817) #13	ENSPMRG00000005820	NPAS2 (ENSPMRG00000005837) #14	ENSPMRG00000005864 #16	TBC1D8 (ENSPMRG00000005873) #17	ENSPMRG00000005889	CNOT11 (ENSPMRG00000005895) #18	RNF149 (ENSPMRG00000005903) #19	CREG2 (ENSPMRG00000005921)	RFX8 (ENSPMRG00000005942) #21	ENSPMRG00000005973	ENSPMRG00000005994	ENSPMRG00000006005	ENSPMRG00000006023	ENSPMRG00000006042	MAP4K4 (ENSPMRG00000007014) #22	IL1R2 (ENSPMRG00000011616) #23	ENSPMRG00000011619 #26	ENSPMRG00000011629 #26	ENSPMRG00000011636 #27	IL18R1 (ENSPMRG00000011642) #28	IL18RAP (ENSPMRG00000011659) #29	SLC9A4 (ENSPMRG00000011679) #30	SLC9A2 (ENSPMRG00000011695) #31	MFSD9 (ENSPMRG00000011701) #32	TMEM182 (ENSPMRG00000011708) #33	ENSPMRG00000011710	POU3F3 (ENSPMRG00000011715)	MRPS9 (ENSPMRG00000011720) #35	GPR45 (ENSPMRG00000011728) #36	TGFBRAP1 (ENSPMRG00000011732) #37
Argentine black and white tegu	MODERN SPECIES		AFF3 (ENSSMRG00000021518) #8	LONRF2 (ENSSMRG00000021517) #9	CHST10 (ENSSMRG00000021516) #10	NMS (ENSSMRG00000021515) #12	ENSSMRG00000021514	ENSSMRG00000021513	PDCL3 (ENSSMRG00000021512) #13	NPAS2 (ENSSMRG00000021510) #14	RPL31 (ENSSMRG00000021509) ##16	TBC1D8 (ENSSMRG00000021508) #17	CNOT11 (ENSSMRG00000021506) #18	RNF149 (ENSSMRG00000021505) #19	CREG2 (ENSSMRG00000021504)	ENSSMRG00000021503	ENSSMRG00000021502	MAP4K4 (ENSSMRG00000004397) #22	IL1R2 (ENSSMRG00000004299) #23	IL1RL2 (ENSSMRG00000004295) #26	ENSSMRG00000004286	ENSSMRG00000004284	ENSSMRG00000004281	IL1RL1 (ENSSMRG00000004272) #27	IL18R1 (ENSSMRG00000004265) #28	IL18RAP (ENSSMRG00000004262) #29	SLC9A4 (ENSSMRG00000004192) #30	SLC9A2 (ENSSMRG00000003888) #31	MFSD9 (ENSSMRG00000003875) #32	TMEM182 (ENSSMRG00000003872) #33	ENSSMRG00000003868	ENSSMRG00000003862	POU3F3 (ENSSMRG00000003800)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b #8	ENSGT00440000033329.b.a.a #9	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb.p	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000161561.j	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Lizard	MODERN SPECIES	857											ENSACAG00000041610	ENSACAG00000022216	ENSACAG00000045313	ENSACAG00000005929	ENSACAG00000039278	MAP4K4 (ENSACAG00000007525) #22	IL1R2 (ENSACAG00000007477) #23	ENSACAG00000007454 #26	ENSACAG00000036810 #26	IL1RL1 (ENSACAG00000007434) #27	IL18R1 (ENSACAG00000007402) #28	IL18RAP (ENSACAG00000007382) #29	SLC9A4 (ENSACAG00000044941) #30	SLC9A2 (ENSACAG00000007302) #31	MFSD9 (ENSACAG00000035485) #32	TMEM182 (ENSACAG00000007270) #33	ENSACAG00000008907	MRPS9 (ENSACAG00000011232) #35
Elapidae	ANCESTRAL SPECIES	13	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb.p	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000161561.j.c.a.a.b.a	ENSGT00940000161561.j.c.a.a.a	ENSGT00940000161561.j.d.b	ENSGT00940000176165	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.b.a.a #28	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES		DHRS9 (ENSNNAG00000001151)	LRP2 (ENSNNAG00000000806)	ENSNNAG00000000731	BBS5 (ENSNNAG00000000718)	KLHL41 (ENSNNAG00000000705)	FASTKD1 (ENSNNAG00000000686)	PPIG (ENSNNAG00000000669)	ENSNNAG00000000633	PHOSPHO2 (ENSNNAG00000000607)	ENSNNAG00000000591	ENSNNAG00000000581	SSB (ENSNNAG00000000557)	METTL5 (ENSNNAG00000000537)	UBR3 (ENSNNAG00000000375)	ENSNNAG00000000265	ENSNNAG00000000259 #22	SP5 (ENSNNAG00000000243)	ENSNNAG00000000580	GAD1 (ENSNNAG00000000447)	GORASP2 (ENSNNAG00000000356)	TLK1 (ENSNNAG00000000305)	DCAF17 (ENSNNAG00000000257)	CYBRD1 (ENSNNAG00000000231)	DYNC1I2 (ENSNNAG00000000221)	SLC25A12 (ENSNNAG00000000213)	HAT1 (ENSNNAG00000000204)	METAP1D (ENSNNAG00000000198)	DLX1 (ENSNNAG00000000195)	DLX2 (ENSNNAG00000000192)	ENSNNAG00000000187	ITGA6 (ENSNNAG00000000157)
Indian cobra	MODERN SPECIES	5	AFF3 (ENSNNAG00000017584) #8	LONRF2 (ENSNNAG00000017613) #9	CHST10 (ENSNNAG00000017622) #10	ENSNNAG00000017631	PDCL3 (ENSNNAG00000017634) #13	NPAS2 (ENSNNAG00000017640) #14	ENSNNAG00000017654 #16	TBC1D8 (ENSNNAG00000017661) #17	CNOT11 (ENSNNAG00000017670) #18	RNF149 (ENSNNAG00000017674) #19	CREG2 (ENSNNAG00000017679)	ENSNNAG00000017683	ENSNNAG00000017686	ENSNNAG00000007594	ENSNNAG00000007639	MAP4K4 (ENSNNAG00000007834) #22	IL1R2 (ENSNNAG00000008516) #23	IL1RL2 (ENSNNAG00000008536) #26	IL18R1 (ENSNNAG00000008612) #28	SLC9A4 (ENSNNAG00000008745) #30	SLC9A2 (ENSNNAG00000008769) #31	MFSD9 (ENSNNAG00000008786) #32	TMEM182 (ENSNNAG00000008821) #33	POU3F3 (ENSNNAG00000008862)	MRPS9 (ENSNNAG00000008906) #35	GPR45 (ENSNNAG00000008932) #36	TGFBRAP1 (ENSNNAG00000008976) #37	C2orf49 (ENSNNAG00000009027)	FHL2 (ENSNNAG00000009043)	ENSNNAG00000009065	ENSNNAG00000009080
Elapidae_a	ANCESTRAL SPECIES	16	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb.p	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000161561.j.c.a.a.b.a	ENSGT00940000161561.j.c.a.a.a	ENSGT00940000161561.j.d.b	ENSGT00940000161561.j.d.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.b.a.a #28	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00690000102286.f.a	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	3420																ENSLLTG00000005102 #22
Blue-lipped sea krait	MODERN SPECIES	2100																MAP4K4 (ENSLLTG00000002223) #22
Acanthophiinae	ANCESTRAL SPECIES	21	ENSGT01060000250476	ENSGT00940000157128 #10	ENSGT00940000153118.eb.p	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000161561.j.c.a.a.b.a	ENSGT00940000161561.j.c.b	ENSGT00940000161561.j.c.a.a.a	ENSGT00940000161561.j.d.b	ENSGT00940000161561.j.d.a	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a #26	ENSGT01090000259985.b.b.a.a #28	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a	ENSGT00940000157728.b
Eastern brown snake	MODERN SPECIES	35	CHST10 (ENSPTXG00000002152) #10	ENSPTXG00000002156	PDCL3 (ENSPTXG00000002159) #13	NPAS2 (ENSPTXG00000002163) #14	RPL31 (ENSPTXG00000002170) ##16	TBC1D8 (ENSPTXG00000002176) #17	CNOT11 (ENSPTXG00000002180) #18	RNF149 (ENSPTXG00000002185) #19	CREG2 (ENSPTXG00000002285)	ENSPTXG00000002288	ENSPTXG00000002476	ENSPTXG00000002479	ENSPTXG00000002484	ENSPTXG00000002488	ENSPTXG00000002494	MAP4K4 (ENSPTXG00000002557) #22	IL1R2 (ENSPTXG00000002664) #23	ENSPTXG00000002668 #26	IL18R1 (ENSPTXG00000002671) #28	SLC9A4 (ENSPTXG00000002675) #30	SLC9A2 (ENSPTXG00000002680) #31	MFSD9 (ENSPTXG00000002681) #32	TMEM182 (ENSPTXG00000002683) #33	ENSPTXG00000002686	POU3F3 (ENSPTXG00000002689)	MRPS9 (ENSPTXG00000000120) #35	GPR45 (ENSPTXG00000000147) #36	TGFBRAP1 (ENSPTXG00000000171) #37	C2orf49 (ENSPTXG00000000186)	FHL2 (ENSPTXG00000000197)	NCK2 (ENSPTXG00000000209)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	93														ENSNSUG00000014422	ENSNSUG00000014421	ENSNSUG00000014420 #22	SP5 (ENSNSUG00000014418)	GAD1 (ENSNSUG00000014417)	GORASP2 (ENSNSUG00000014415)	TLK1 (ENSNSUG00000014390)	DCAF17 (ENSNSUG00000014388)	DYNC1I2 (ENSNSUG00000014387)	SLC25A12 (ENSNSUG00000011883)	HAT1 (ENSNSUG00000011801)	METAP1D (ENSNSUG00000011800)	DLX1 (ENSNSUG00000011798)	DLX2 (ENSNSUG00000011797)	ITGA6 (ENSNSUG00000011670)	PDK1 (ENSNSUG00000011584)	ENSNSUG00000011582	RAPGEF4 (ENSNSUG00000011574)
Mainland tiger snake	MODERN SPECIES	17	CHST10 (ENSNSUG00000002292) #10	ENSNSUG00000002291	PDCL3 (ENSNSUG00000002289) #13	NPAS2 (ENSNSUG00000002272) #14	RPL31 (ENSNSUG00000002269) ##16	TBC1D8 (ENSNSUG00000002241) #17	CNOT11 (ENSNSUG00000002227) #18	RNF149 (ENSNSUG00000002223) #19	CREG2 (ENSNSUG00000002222)	ENSNSUG00000002217	ENSNSUG00000002207	ENSNSUG00000002134	ENSNSUG00000002130	ENSNSUG00000002126	ENSNSUG00000002072	MAP4K4 (ENSNSUG00000002063) #22	IL1R2 (ENSNSUG00000002062) #23	ENSNSUG00000002059 #26	ENSNSUG00000002055 #26	ENSNSUG00000002053	SLC9A4 (ENSNSUG00000002050) #30	SLC9A2 (ENSNSUG00000002047) #31	ENSNSUG00000002046	TMEM182 (ENSNSUG00000002039) #33	POU3F3 (ENSNSUG00000002036)	MRPS9 (ENSNSUG00000002032) #35	GPR45 (ENSNSUG00000002021) #36	TGFBRAP1 (ENSNSUG00000001631) #37	C2orf49 (ENSNSUG00000001628)	FHL2 (ENSNSUG00000001622)	NCK2 (ENSNSUG00000001620)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	45															GPR158 (ENSSPUG00000015470)	ENSSPUG00000015455 #22	ENSSPUG00000015445	APBB1IP (ENSSPUG00000015435)	ENSSPUG00000015427	ENSSPUG00000015418	PDSS1 (ENSSPUG00000015388)	ABI1 (ENSSPUG00000015366)
tuatara	MODERN SPECIES	1836										NPAS2 (ENSSPUG00000012100) #14	ENSSPUG00000012136 #16	TBC1D8 (ENSSPUG00000012165) #17	CNOT11 (ENSSPUG00000012189) #18	RNF149 (ENSSPUG00000012226) #19	CREG2 (ENSSPUG00000012239)	MAP4K4 (ENSSPUG00000012368) #22	ENSSPUG00000012638	ENSSPUG00000012643 #26
Archelosauria	ANCESTRAL SPECIES		ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Cryptodira	ANCESTRAL SPECIES		ENSGT00950000182974.a.a.a.b.o.a #8	ENSGT00950000182974.a.a.a.b.o.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00940000153118.eb.k.a	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Chinese turtle	MODERN SPECIES	1861								ENSPSIG00000007564	NPAS2 (ENSPSIG00000007391) #14	ENSPSIG00000007165 #16	TBC1D8 (ENSPSIG00000017478) #17	CNOT11 (ENSPSIG00000017469) #18	ENSPSIG00000017466 #19	CREG2 (ENSPSIG00000017376)	RFX8 (ENSPSIG00000017366) #21	MAP4K4 (ENSPSIG00000017311) #22	IL1R2 (ENSPSIG00000017241) #23	ENSPSIG00000017235 #26	ENSPSIG00000017180 #26	ENSPSIG00000016859 #26
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00950000182974.a.a.a.b.o.a #8	ENSGT00950000182974.a.a.a.b.o.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b.j	ENSGT00940000153118.eb.k.a	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Emydidae	ANCESTRAL SPECIES	30	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.o.a #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b.j	ENSGT00940000153118.eb.k.a	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Three-toed box turtle	MODERN SPECIES	4	EIF5B (ENSTMTG00000006054)	REV1 (ENSTMTG00000005991) #7	AFF3 (ENSTMTG00000005930) #8	ENSTMTG00000005917 #9	CHST10 (ENSTMTG00000005909) #10	ENSTMTG00000005895	ENSTMTG00000005879	PDCL3 (ENSTMTG00000005841) #13	NPAS2 (ENSTMTG00000005764) #14	ENSTMTG00000005751 #16	TBC1D8 (ENSTMTG00000005640) #17	CNOT11 (ENSTMTG00000005602) #18	RNF149 (ENSTMTG00000005583) #19	CREG2 (ENSTMTG00000005561)	RFX8 (ENSTMTG00000005513) #21	MAP4K4 (ENSTMTG00000002893) #22	IL1R2 (ENSTMTG00000002738) #23	ENSTMTG00000002729 #26	ENSTMTG00000002722 #26	ENSTMTG00000002695 #26	IL1RL1 (ENSTMTG00000002654) #27	IL18R1 (ENSTMTG00000002635) #28	IL18RAP (ENSTMTG00000002624) #29	SLC9A2 (ENSTMTG00000002616) #31	SLC9A4 (ENSTMTG00000002595) #30	MFSD9 (ENSTMTG00000002584) #32	TMEM182 (ENSTMTG00000002575) #33	POU3F3 (ENSTMTG00000002570)	MRPS9 (ENSTMTG00000002562) #35	GPR45 (ENSTMTG00000002558) #36	TGFBRAP1 (ENSTMTG00000002552) #37
painted turtle	MODERN SPECIES	790	ENSCPBG00000026752	NCOA3 (ENSCPBG00000026751)	SULF2 (ENSCPBG00000026750)	PREX1 (ENSCPBG00000026747)	ENSCPBG00000026746	ENSCPBG00000026744	CSE1L (ENSCPBG00000026743)	STAU1 (ENSCPBG00000026741)	ENSCPBG00000026736	ENSCPBG00000026728	KCNB1 (ENSCPBG00000026727)	PTGIS (ENSCPBG00000026724)	RNF149 (ENSCPBG00000026717) #19	CREG2 (ENSCPBG00000026715)	RFX8 (ENSCPBG00000026713) #21	MAP4K4 (ENSCPBG00000017157) #22	IL1R2 (ENSCPBG00000016743) #23	ENSCPBG00000016740 #26	ENSCPBG00000016735 #26
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.o.a #8	ENSGT00950000182974.a.a.a.b.o.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT01020000230360.c.b.b.j	ENSGT01020000230360.c.b.b.i	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37
Goode s thornscrub tortoise	MODERN SPECIES		REV1 (ENSGEVG00005019760) #7	ENSGEVG00005019741 #8	ENSGEVG00005019735 #8	LONRF2 (ENSGEVG00005019700) #9	CHST10 (ENSGEVG00005019675) #10	ENSGEVG00005019668	ENSGEVG00005019664	PDCL3 (ENSGEVG00005019657) #13	NPAS2 (ENSGEVG00005019641) #14	ENSGEVG00005019628 ##16	TBC1D8 (ENSGEVG00005019501) #17	CNOT11 (ENSGEVG00005019467) #18	RNF149 (ENSGEVG00005019452) #19	CREG2 (ENSGEVG00005019442)	RFX8 (ENSGEVG00005019435) #21	MAP4K4 (ENSGEVG00005019402) #22	ENSGEVG00005019381	IL1R2 (ENSGEVG00005019373) #23	ENSGEVG00005019358 #26	ENSGEVG00005019337 #26	ENSGEVG00005018984 #26	IL1RL1 (ENSGEVG00005018814) #27	IL18R1 (ENSGEVG00005018782) #28	IL18RAP (ENSGEVG00005018716) #29	SLC9A4 (ENSGEVG00005018665) #30	SLC9A2 (ENSGEVG00005018644) #31	MFSD9 (ENSGEVG00005018630) #32	TMEM182 (ENSGEVG00005018580) #33	POU3F3 (ENSGEVG00005018567)	MRPS9 (ENSGEVG00005018553) #35	GPR45 (ENSGEVG00005018536) #36
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1151																ENSCABG00000013132 #22	ENSCABG00000013128	GAD2 (ENSCABG00000013125)	APBB1IP (ENSCABG00000013118)	PDSS1 (ENSCABG00000013115)	ABI1 (ENSCABG00000013111)	ACBD5 (ENSCABG00000013110)	MASTL (ENSCABG00000013102)	YME1L1 (ENSCABG00000013084)	ENSCABG00000013081	ENSCABG00000013079	ENSCABG00000013077	ENSCABG00000013062
Abingdon island giant tortoise	MODERN SPECIES	1785			LONRF2 (ENSCABG00000005835) #9	CHST10 (ENSCABG00000005837) #10	ENSCABG00000005843	ENSCABG00000005845	PDCL3 (ENSCABG00000005848) #13	NPAS2 (ENSCABG00000005851) #14	ENSCABG00000005859 #16	TBC1D8 (ENSCABG00000005863) #17	CNOT11 (ENSCABG00000005930) #18	ENSCABG00000005936 #19	ENSCABG00000005937 #19	CREG2 (ENSCABG00000005942)	RFX8 (ENSCABG00000005945) #21	MAP4K4 (ENSCABG00000005995) #22	IL1R2 (ENSCABG00000007233) #23	ENSCABG00000007234 #26	ENSCABG00000007238 #26	ENSCABG00000007242 #26	IL1RL1 (ENSCABG00000007264) #27	IL18R1 (ENSCABG00000007283) #28	IL18RAP (ENSCABG00000007284) #29
Archosauria	ANCESTRAL SPECIES	2	ENSGT00950000182974.a.a.a.b.o.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00950000183001.a.b.b #36	ENSGT00530000063596.A #37	ENSGT00390000007488
Australian saltwater crocodile	MODERN SPECIES	27	ENSCPRG00005012170 #8	ENSCPRG00005012217 #8	LONRF2 (ENSCPRG00005012229) #9	CHST10 (ENSCPRG00005012284) #10	NMS (ENSCPRG00005012288) #12	ENSCPRG00005012294	ENSCPRG00005012304	PDCL3 (ENSCPRG00005012308) #13	NPAS2 (ENSCPRG00005012396) #14	ENSCPRG00005012417 ##16	TBC1D8 (ENSCPRG00005012439) #17	CNOT11 (ENSCPRG00005012538) #18	RNF149 (ENSCPRG00005012543) #19	CREG2 (ENSCPRG00005012548)	RFX8 (ENSCPRG00005012592) #21	MAP4K4 (ENSCPRG00005012996) #22	IL1R2 (ENSCPRG00005014328) #23	ENSCPRG00005014332 #26	ENSCPRG00005014345 #26	IL1RL1 (ENSCPRG00005014349) #27	IL18R1 (ENSCPRG00005014360) #28	IL18RAP (ENSCPRG00005014366) #29	SLC9A4 (ENSCPRG00005014401) #30	SLC9A2 (ENSCPRG00005014413) #31	MFSD9 (ENSCPRG00005014422) #32	TMEM182 (ENSCPRG00005014426) #33	POU3F3 (ENSCPRG00005014465)	MRPS9 (ENSCPRG00005014477) #35	GPR45 (ENSCPRG00005014486) #36	TGFBRAP1 (ENSCPRG00005014490) #37	C2orf49 (ENSCPRG00005014517)
Aves	ANCESTRAL SPECIES		ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
African ostrich	MODERN SPECIES	318	AFF3 (ENSSCUG00000003083) #8	ENSSCUG00000003081	LONRF2 (ENSSCUG00000003077) #9	CHST10 (ENSSCUG00000003076) #10	ENSSCUG00000003073	ENSSCUG00000003072	ENSSCUG00000003070	PDCL3 (ENSSCUG00000003067) #13	NPAS2 (ENSSCUG00000003060) #14	ENSSCUG00000003056 #16	TBC1D8 (ENSSCUG00000003052) #17	CNOT11 (ENSSCUG00000003045) #18	RNF149 (ENSSCUG00000003038) #19	CREG2 (ENSSCUG00000003034)	RFX8 (ENSSCUG00000003032) #21	MAP4K4 (ENSSCUG00000002914) #22	IL1R2 (ENSSCUG00000002791) #23	ENSSCUG00000002788 #26	ENSSCUG00000002784 #26	IL1RL1 (ENSSCUG00000002777) #27	IL18R1 (ENSSCUG00000002775) #28	IL18RAP (ENSSCUG00000002774) #29	SLC9A4 (ENSSCUG00000002772) #30	SLC9A2 (ENSSCUG00000002771) #31	MFSD9 (ENSSCUG00000002768) #32	TMEM182 (ENSSCUG00000002767) #33
Neognathae	ANCESTRAL SPECIES	1	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00390000015645	ENSGT00940000162583	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Golden eagle	MODERN SPECIES	15	EIF5B (ENSACCG00020014990)	REV1 (ENSACCG00020014922) #7	AFF3 (ENSACCG00020014878) #8	LONRF2 (ENSACCG00020014815) #9	CHST10 (ENSACCG00020014786) #10	ENSACCG00020014770	ENSACCG00020014759	ENSACCG00020014747	PDCL3 (ENSACCG00020014738) #13	NPAS2 (ENSACCG00020014671) #14	RPL31 (ENSACCG00020014618) ##16	TBC1D8 (ENSACCG00020014602) #17	CNOT11 (ENSACCG00020014589) #18	RNF149 (ENSACCG00020014559) #19	CREG2 (ENSACCG00020014528)	MAP4K4 (ENSACCG00020013968) #22	IL1R2 (ENSACCG00020013070) #23	ENSACCG00020013043 #26	ENSACCG00020012995 #26	IL1RL1 (ENSACCG00020012880) #27	ENSACCG00020012807 #29	SLC9A4 (ENSACCG00020012747) #30	SLC9A2 (ENSACCG00020012679) #31	MFSD9 (ENSACCG00020012636) #32	TMEM182 (ENSACCG00020012614) #33	POU3F3 (ENSACCG00020012571)	MRPS9 (ENSACCG00020012558) #35	TGFBRAP1 (ENSACCG00020012525) #37	C2orf49 (ENSACCG00020012508)	FHL2 (ENSACCG00020012491)	NCK2 (ENSACCG00020012472)
Kakapo	MODERN SPECIES	11	EIF5B (ENSSHBG00005014392)	REV1 (ENSSHBG00005014409) #7	AFF3 (ENSSHBG00005014423) #8	LONRF2 (ENSSHBG00005014441) #9	CHST10 (ENSSHBG00005014448) #10	ENSSHBG00005014454	ENSSHBG00005014462	ENSSHBG00005014470	PDCL3 (ENSSHBG00005014477) #13	NPAS2 (ENSSHBG00005014504) #14	RPL31 (ENSSHBG00005014532) ##16	TBC1D8 (ENSSHBG00005014556) #17	CNOT11 (ENSSHBG00005014577) #18	RNF149 (ENSSHBG00005014582) #19	CREG2 (ENSSHBG00005014596)	MAP4K4 (ENSSHBG00005014609) #22	IL1R2 (ENSSHBG00005014627) #23	ENSSHBG00005014636 #26	ENSSHBG00005014645 #27	ENSSHBG00005000025 #26	IL18R1 (ENSSHBG00005000053) #28	IL18RAP (ENSSHBG00005000071) #29	SLC9A4 (ENSSHBG00005000088) #30	SLC9A2 (ENSSHBG00005000107) #31	MFSD9 (ENSSHBG00005000130) #32	TMEM182 (ENSSHBG00005001916) #33	ENSSHBG00005001965	MRPS9 (ENSSHBG00005002086) #35	TGFBRAP1 (ENSSHBG00005002115) #37	C2orf49 (ENSSHBG00005002142)	FHL2 (ENSSHBG00005002161)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Great tit	DUPLICATION
Great tit	MODERN SPECIES	11	MLLT10 (ENSPMJG00000006467)	DNAJC1 (ENSPMJG00000006417)	COMMD3 (ENSPMJG00000006415)	BMI1 (ENSPMJG00000006411)	SPAG6 (ENSPMJG00000006367)	PIP4K2A (ENSPMJG00000006363)	ARMC3 (ENSPMJG00000006350)	ENSPMJG00000006339	ENSPMJG00000006336	PTF1A (ENSPMJG00000006333)	KIAA1217 (ENSPMJG00000006299)	ARHGAP21 (ENSPMJG00000006247)	PRTFDC1 (ENSPMJG00000006243)	ENKUR (ENSPMJG00000006240)	GPR158 (ENSPMJG00000006235)	ENSPMJG00000006210 #22	ENSPMJG00000006207	ENSPMJG00000006200	GAD2 (ENSPMJG00000006196)	APBB1IP (ENSPMJG00000006178)	ENSPMJG00000006177	PDSS1 (ENSPMJG00000006176)	ABI1 (ENSPMJG00000006173)	ACBD5 (ENSPMJG00000006169)	MASTL (ENSPMJG00000006160)	YME1L1 (ENSPMJG00000006156)	PTCHD3 (ENSPMJG00000006153)	ENSPMJG00000006151	RAB18 (ENSPMJG00000006149)	MKX (ENSPMJG00000006148)	ODAD2 (ENSPMJG00000006117)
Great tit	MODERN SPECIES		EIF5B (ENSPMJG00000015232)	REV1 (ENSPMJG00000015231) #7	AFF3 (ENSPMJG00000015197) #8	LONRF2 (ENSPMJG00000015196) #9	CHST10 (ENSPMJG00000015195) #10	ENSPMJG00000015194	ENSPMJG00000015193	PDCL3 (ENSPMJG00000015192) #13	NPAS2 (ENSPMJG00000015190) #14	ENSPMJG00000015189 ##16	TBC1D8 (ENSPMJG00000015188) #17	CNOT11 (ENSPMJG00000015187) #18	RNF149 (ENSPMJG00000015185) #19	CREG2 (ENSPMJG00000015184)	RFX8 (ENSPMJG00000015183) #21	MAP4K4 (ENSPMJG00000011672) #22	IL1R2 (ENSPMJG00000011670) #23	ENSPMJG00000011669 #26	ENSPMJG00000011668 #26	IL1RL1 (ENSPMJG00000011667) #27	IL18R1 (ENSPMJG00000011666) #28	IL18RAP (ENSPMJG00000011665) #29	SLC9A4 (ENSPMJG00000011664) #30	SLC9A2 (ENSPMJG00000011663) #31	MFSD9 (ENSPMJG00000011662) #32	TMEM182 (ENSPMJG00000011661) #33	POU3F3 (ENSPMJG00000011644)	MRPS9 (ENSPMJG00000011637) #35	TGFBRAP1 (ENSPMJG00000011633) #37	C2orf49 (ENSPMJG00000011632)	FHL2 (ENSPMJG00000011631)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744.c.a #14	ENSGT00940000160744.c.b #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Flycatcher	MODERN SPECIES		ENSFALG00000003920	REV1 (ENSFALG00000003890) #7	AFF3 (ENSFALG00000003878) #8	LONRF2 (ENSFALG00000003868) #9	CHST10 (ENSFALG00000003864) #10	NMS (ENSFALG00000028879) #12	ENSFALG00000014993	PDCL3 (ENSFALG00000025457) #13	NPAS2 (ENSFALG00000003827) #14	RPL31 (ENSFALG00000003814) ##16	TBC1D8 (ENSFALG00000003811) #17	CNOT11 (ENSFALG00000003802) #18	RNF149 (ENSFALG00000003793) #19	CREG2 (ENSFALG00000027514)	RFX8 (ENSFALG00000003782) #21	MAP4K4 (ENSFALG00000003751) #22	IL1R2 (ENSFALG00000003723) #23	ENSFALG00000003716 #26	ENSFALG00000003707 #26	IL1RL1 (ENSFALG00000003700) #27	IL18R1 (ENSFALG00000003692) #28	IL18RAP (ENSFALG00000003687) #29	SLC9A4 (ENSFALG00000003679) #30	SLC9A2 (ENSFALG00000003673) #31	MFSD9 (ENSFALG00000026417) #32	ENSFALG00000022898	TMEM182 (ENSFALG00000003665) #33	POU3F3 (ENSFALG00000022153)	MRPS9 (ENSFALG00000003647) #35	TGFBRAP1 (ENSFALG00000027743) #37	C2orf49 (ENSFALG00000025508)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744.c.a #14	ENSGT00940000160744.c.b #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Medium ground finch	MODERN SPECIES	18	TXNDC9 (ENSGFOG00000008919)	ENSGFOG00000008749	REV1 (ENSGFOG00000008714) #7	AFF3 (ENSGFOG00000008681) #8	LONRF2 (ENSGFOG00000008664) #9	CHST10 (ENSGFOG00000008655) #10	ENSGFOG00000008650	ENSGFOG00000008644	PDCL3 (ENSGFOG00000008641) #13	NPAS2 (ENSGFOG00000008612) #14	RPL31 (ENSGFOG00000008600) ##16	TBC1D8 (ENSGFOG00000008530) #17	CNOT11 (ENSGFOG00000008515) #18	RNF149 (ENSGFOG00000008490) #19	CREG2 (ENSGFOG00000008482)	MAP4K4 (ENSGFOG00000005921) #22	IL1R2 (ENSGFOG00000005829) #23	ENSGFOG00000005824 #26	ENSGFOG00000005818 #26	ENSGFOG00000005814 #27	IL18R1 (ENSGFOG00000005801) #28	IL18RAP (ENSGFOG00000005783) #29	SLC9A4 (ENSGFOG00000005743) #30	SLC9A2 (ENSGFOG00000005732) #31	MFSD9 (ENSGFOG00000005723) #32	TMEM182 (ENSGFOG00000005717) #33	POU3F3 (ENSGFOG00000005711)	MRPS9 (ENSGFOG00000005700) #35	TGFBRAP1 (ENSGFOG00000005692) #37	C2orf49 (ENSGFOG00000005686)	FHL2 (ENSGFOG00000005677)
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744.c.a #14	ENSGT00940000160744.c.b #14	ENSGT00950000183030.n ##16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Zebra finch	MODERN SPECIES		REV1 (ENSTGUG00000010082) #7	AFF3 (ENSTGUG00000010075) #8	LONRF2 (ENSTGUG00000010057) #9	CHST10 (ENSTGUG00000010047) #10	ENSTGUG00000010044	ENSTGUG00000010042	PDCL3 (ENSTGUG00000010036) #13	ENSTGUG00000010003 #14	ENSTGUG00000023169 #14	RPL31 (ENSTGUG00000027560) ##16	TBC1D8 (ENSTGUG00000009966) #17	CNOT11 (ENSTGUG00000009952) #18	RNF149 (ENSTGUG00000009945) #19	CREG2 (ENSTGUG00000020072)	RFX8 (ENSTGUG00000018334) #21	MAP4K4 (ENSTGUG00000009900) #22	IL1R2 (ENSTGUG00000009893) #23	ENSTGUG00000009881 #26	ENSTGUG00000018199 #26	IL1RL1 (ENSTGUG00000009867) #27	IL18R1 (ENSTGUG00000025203) #28	IL18RAP (ENSTGUG00000009856) #29	SLC9A4 (ENSTGUG00000009828) #30	SLC9A2 (ENSTGUG00000009816) #31	MFSD9 (ENSTGUG00000019446) #32	TMEM182 (ENSTGUG00000026318) #33	ENSTGUG00000024352	MRPS9 (ENSTGUG00000009773) #35	TGFBRAP1 (ENSTGUG00000009752) #37	C2orf49 (ENSTGUG00000009750)	FHL2 (ENSTGUG00000009735)
Common canary	DUPLICATION
Common canary	MODERN SPECIES	5	NEBL (ENSSCAG00000010164)	MLLT10 (ENSSCAG00000010116)	DNAJC1 (ENSSCAG00000010104)	COMMD3 (ENSSCAG00000010098)	BMI1 (ENSSCAG00000010095)	SPAG6 (ENSSCAG00000010084)	PIP4K2A (ENSSCAG00000010076)	ARMC3 (ENSSCAG00000010054)	ENSSCAG00000010037	PTF1A (ENSSCAG00000010034)	KIAA1217 (ENSSCAG00000009958)	ARHGAP21 (ENSSCAG00000009927)	PRTFDC1 (ENSSCAG00000009917)	ENKUR (ENSSCAG00000009912)	GPR158 (ENSSCAG00000009867)	ENSSCAG00000009855 #22	ENSSCAG00000009851	GAD2 (ENSSCAG00000009663)	APBB1IP (ENSSCAG00000009623)	ENSSCAG00000009617	PDSS1 (ENSSCAG00000009611)	ABI1 (ENSSCAG00000009593)	ACBD5 (ENSSCAG00000009560)	MASTL (ENSSCAG00000009550)	YME1L1 (ENSSCAG00000009065)	PTCHD3 (ENSSCAG00000008993)	RAB18 (ENSSCAG00000008984)	MKX (ENSSCAG00000008967)	ODAD2 (ENSSCAG00000008955)	MPP7 (ENSSCAG00000008935)	ENSSCAG00000008921
Common canary	MODERN SPECIES	4	TXNDC9 (ENSSCAG00000016791)	EIF5B (ENSSCAG00000016792)	REV1 (ENSSCAG00000016796) #7	AFF3 (ENSSCAG00000016803) #8	LONRF2 (ENSSCAG00000016807) #9	CHST10 (ENSSCAG00000000003) #10	ENSSCAG00000000005	ENSSCAG00000000007	PDCL3 (ENSSCAG00000000010) #13	NPAS2 (ENSSCAG00000000024) #14	RPL31 (ENSSCAG00000000039) ##16	TBC1D8 (ENSSCAG00000000065) #17	CNOT11 (ENSSCAG00000000117) #18	RNF149 (ENSSCAG00000000141) #19	CREG2 (ENSSCAG00000000195)	MAP4K4 (ENSSCAG00000000828) #22	IL1R2 (ENSSCAG00000002842) #23	ENSSCAG00000002854 #26	ENSSCAG00000002870 #26	IL1RL1 (ENSSCAG00000002888) #27	IL18R1 (ENSSCAG00000002905) #28	IL18RAP (ENSSCAG00000002913) #29	SLC9A4 (ENSSCAG00000002935) #30	SLC9A2 (ENSSCAG00000003029) #31	MFSD9 (ENSSCAG00000003073) #32	TMEM182 (ENSSCAG00000003084) #33	ENSSCAG00000003113	MRPS9 (ENSSCAG00000003137) #35	TGFBRAP1 (ENSSCAG00000003147) #37	C2orf49 (ENSSCAG00000003150)	FHL2 (ENSSCAG00000003155)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00510000049213 #12	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Anatidae	ANCESTRAL SPECIES	32	ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00950000182974.a.a.a.b.o.b #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT00940000153118.eb	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	30	DNAJC1 (ENSABRG00000003814)	COMMD3 (ENSABRG00000003796)	BMI1 (ENSABRG00000003771)	SPAG6 (ENSABRG00000003755)	PIP4K2A (ENSABRG00000003650)	ARMC3 (ENSABRG00000003474)	ENSABRG00000003435	PTF1A (ENSABRG00000003424)	OTUD1 (ENSABRG00000003412)	KIAA1217 (ENSABRG00000003179)	ARHGAP21 (ENSABRG00000002966)	PRTFDC1 (ENSABRG00000002915)	ENKUR (ENSABRG00000002896)	THNSL1 (ENSABRG00000002890)	GPR158 (ENSABRG00000002847)	ENSABRG00000002812 #22	MYO3A (ENSABRG00000002738)	GAD2 (ENSABRG00000002721)	APBB1IP (ENSABRG00000002650)	ENSABRG00000002591	PDSS1 (ENSABRG00000002561)	ABI1 (ENSABRG00000002544)	ACBD5 (ENSABRG00000002497)	MASTL (ENSABRG00000002394)	YME1L1 (ENSABRG00000002314)	PTCHD3 (ENSABRG00000002304)	ENSABRG00000002281	ENSABRG00000002254	MKX (ENSABRG00000002222)	ODAD2 (ENSABRG00000002137)	MPP7 (ENSABRG00000001975)
Pink-footed goose	MODERN SPECIES	101		ENSABRG00000011219	CHST10 (ENSABRG00000011225) #10	ENSABRG00000011241	ENSABRG00000011246	ENSABRG00000011249	ENSABRG00000011257	PDCL3 (ENSABRG00000011268) #13	NPAS2 (ENSABRG00000011287) #14	ENSABRG00000011308 #16	TBC1D8 (ENSABRG00000011315) #17	CNOT11 (ENSABRG00000011324) #18	RNF149 (ENSABRG00000011357) #19	CREG2 (ENSABRG00000011364)	RFX8 (ENSABRG00000011370) #21	MAP4K4 (ENSABRG00000011749) #22	IL1R2 (ENSABRG00000017336) #23	ENSABRG00000017341 #26	ENSABRG00000017353 #26	IL1RL1 (ENSABRG00000017359) #27	IL18R1 (ENSABRG00000017363) #28	IL18RAP (ENSABRG00000017366) #29	SLC9A4 (ENSABRG00000017375) #30	SLC9A2 (ENSABRG00000017390) #31	MFSD9 (ENSABRG00000017397) #32	TMEM182 (ENSABRG00000017401) #33	POU3F3 (ENSABRG00000017444)	MRPS9 (ENSABRG00000017449) #35	TGFBRAP1 (ENSABRG00000017455) #37	C2orf49 (ENSABRG00000017459)	FHL2 (ENSABRG00000017461)
Duck	DUPLICATION
Duck	MODERN SPECIES	10	DNAJC1 (ENSAPLG00000016264)	BMI1 (ENSAPLG00000022525)	SPAG6 (ENSAPLG00000013595)	PIP4K2A (ENSAPLG00000004521)	ENSAPLG00000026560	ARMC3 (ENSAPLG00000005071)	PTF1A (ENSAPLG00000022813)	ENSAPLG00000022206	OTUD1 (ENSAPLG00000026401)	KIAA1217 (ENSAPLG00000007810)	ARHGAP21 (ENSAPLG00000008113)	PRTFDC1 (ENSAPLG00000009020)	ENKUR (ENSAPLG00000009270)	THNSL1 (ENSAPLG00000001860)	GPR158 (ENSAPLG00000005836)	ENSAPLG00000030844 #22	MYO3A (ENSAPLG00000005895)	GAD2 (ENSAPLG00000007020)	APBB1IP (ENSAPLG00000011179)	ENSAPLG00000023737	PDSS1 (ENSAPLG00000011581)	ABI1 (ENSAPLG00000011841)	ENSAPLG00000022501	ACBD5 (ENSAPLG00000012250)	MASTL (ENSAPLG00000012632)	YME1L1 (ENSAPLG00000012942)	PTCHD3 (ENSAPLG00000013648)	ENSAPLG00000029634	MKX (ENSAPLG00000010674)	ODAD2 (ENSAPLG00000010322)	MPP7 (ENSAPLG00000009795)
Duck	MODERN SPECIES		TGDS (ENSAPLG00000013769)	GPR180 (ENSAPLG00000013588)	ABCC4 (ENSAPLG00000012227)	CLDN10 (ENSAPLG00000012191)	DZIP1 (ENSAPLG00000011935)	DNAJC3 (ENSAPLG00000011218)	UGGT2 (ENSAPLG00000011310)	ENSAPLG00000018066	NPAS2 (ENSAPLG00000016315) #14	ENSAPLG00000016431 ##16	TBC1D8 (ENSAPLG00000000969) #17	CNOT11 (ENSAPLG00000002957) #18	RNF149 (ENSAPLG00000003131) #19	CREG2 (ENSAPLG00000026852)	RFX8 (ENSAPLG00000022405) #21	MAP4K4 (ENSAPLG00000003218) #22	IL1R2 (ENSAPLG00000004200) #23	ENSAPLG00000004478 #26	ENSAPLG00000004717 #26	IL1RL1 (ENSAPLG00000004919) #27	IL18RAP (ENSAPLG00000005272) #29	SLC9A4 (ENSAPLG00000005368) #30	SLC9A2 (ENSAPLG00000005438) #31	MFSD9 (ENSAPLG00000005908) #32	TMEM182 (ENSAPLG00000028840) #33	MRPS9 (ENSAPLG00000013899) #35	ENSAPLG00000025148 #37	ENSAPLG00000011760 #37	C2orf49 (ENSAPLG00000013546)	FHL2 (ENSAPLG00000013513)	NCK2 (ENSAPLG00000013494)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00510000049213 #12	ENSGT00940000153118.eb.g.b	ENSGT00940000153118.eb.g.a	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Japanese quail	MODERN SPECIES		REV1 (ENSCJPG00005001170) #7	AFF3 (ENSCJPG00005001212) #8	LONRF2 (ENSCJPG00005001247) #9	CHST10 (ENSCJPG00005001255) #10	NMS (ENSCJPG00005001260) #12	ENSCJPG00005001264	ENSCJPG00005001267	PDCL3 (ENSCJPG00005001272) #13	NPAS2 (ENSCJPG00005001288) #14	ENSCJPG00005001293 #16	TBC1D8 (ENSCJPG00005001297) #17	CNOT11 (ENSCJPG00005001306) #18	RNF149 (ENSCJPG00005001315) #19	CREG2 (ENSCJPG00005001319)	RFX8 (ENSCJPG00005001327) #21	MAP4K4 (ENSCJPG00005002274) #22	IL1R2 (ENSCJPG00005013202) #23	ENSCJPG00005013203 #26	ENSCJPG00005013204 #26	IL1RL1 (ENSCJPG00005013205) #27	IL18R1 (ENSCJPG00005013206) #28	ENSCJPG00005013207 #29	SLC9A4 (ENSCJPG00005013209) #30	ENSCJPG00005013210 #31	ENSCJPG00005013211 #31	MFSD9 (ENSCJPG00005013212) #32	TMEM182 (ENSCJPG00005013213) #33	POU3F3 (ENSCJPG00005013222)	MRPS9 (ENSCJPG00005013224) #35	TGFBRAP1 (ENSCJPG00005013225) #37	C2orf49 (ENSCJPG00005013226)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000156374 #7	ENSGT00950000182974.a.a.a.b.p #8	ENSGT00440000033329.b.a.a #9	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT01020000230360.c.b.b	ENSGT00940000153118.eb.g.a	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030.m.a.a.a.b #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT01050000244879.b.a.a #21	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.b #23	ENSGT01090000259985.b.a.b.a.a.b #26	ENSGT01090000259985.b.a.b.a.a.a.a #26	ENSGT01090000259985.b.a.a.a #27	ENSGT01090000259985.b.b.a.a #28	ENSGT01090000259985.b.b.a.b #29	ENSGT00940000160774 #30	ENSGT00940000156807 #31	ENSGT00940000159390 #32	ENSGT00390000017581.b #33	ENSGT00940000163665	ENSGT00390000011204 #35	ENSGT00530000063596.A #37	ENSGT00390000007488	ENSGT00950000183028.a.a.a
Chicken	MODERN SPECIES		REV1 (ENSGALG00010015877) #7	AFF3 (ENSGALG00010015886) #8	LONRF2 (ENSGALG00010015896) #9	CHST10 (ENSGALG00010015913) #10	NMS (ENSGALG00010015933)	ENSGALG00010015949	ENSGALG00010015977	PDCL3 (ENSGALG00010015984) #13	NPAS2 (ENSGALG00010013436) #14	RPL31 (ENSGALG00010013470) #16	TBC1D8 (ENSGALG00010013480) #17	CNOT11 (ENSGALG00010013491) #18	RNF149 (ENSGALG00010013506) #19	CREG2 (ENSGALG00010013520)	RFX8 (ENSGALG00010013525) #21	MAP4K4 (ENSGALG00010013582) #22	IL1R2 (ENSGALG00010013619) #23	IL1R1 (ENSGALG00010013715) #26	ENSGALG00010013744 #26	IL1RL1 (ENSGALG00010013797) #27	IL18R1 (ENSGALG00010013836) #28	IL18RAP (ENSGALG00010013857) #29	SLC9A4 (ENSGALG00010013886) #30	SLC9A2 (ENSGALG00010012976) #31	MFSD9 (ENSGALG00010012991) #32	TMEM182 (ENSGALG00010013012) #33	POU3F3 (ENSGALG00010013125)	MRPS9 (ENSGALG00010013196) #35	TGFBRAP1 (ENSGALG00010013217) #37	C2orf49 (ENSGALG00010013221)	FHL2 (ENSGALG00010013232)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	26	ENSMGAG00000021839	ENSMGAG00000018816	ENSMGAG00000006697	ENSMGAG00000006734	ENSMGAG00000006754	ENSMGAG00000020351	ENSMGAG00000006774	ENSMGAG00000017657	ENSMGAG00000022786	ENSMGAG00000006830	ENSMGAG00000020132	ENSMGAG00000006849	ENSMGAG00000018940	ENSMGAG00000006891	ENSMGAG00000006952	ENSMGAG00000020760 #22	ENSMGAG00000018476	ENSMGAG00000007021	ENSMGAG00000016013	ENSMGAG00000007062	PRTFDC1 (ENSMGAG00000007067)	ENSMGAG00000007174	ENSMGAG00000007092	ADARB2 (ENSMGAG00000005556)	WDR37 (ENSMGAG00000005536)	ENSMGAG00000005526	GTPBP4 (ENSMGAG00000016591)	LARP4B (ENSMGAG00000005472)	DIP2C (ENSMGAG00000005375)	ZMYND11 (ENSMGAG00000005311)	VIPR2 (ENSMGAG00000005280)
Turkey	MODERN SPECIES	27	ENSMGAG00000010053	ENSMGAG00000010060	ENSMGAG00000021955	ENSMGAG00000019846	ENSMGAG00000010108	ENSMGAG00000010120	ENSMGAG00000021808	ENSMGAG00000010229	GORASP2 (ENSMGAG00000010179)	ENSMGAG00000010185	ENSMGAG00000021598	ENSMGAG00000010160	ENSMGAG00000017602	ENSMGAG00000010257	ENSMGAG00000017530	ENSMGAG00000018486 #22	ENSMGAG00000019209	ENSMGAG00000010306	SSB (ENSMGAG00000010328)	METTL5 (ENSMGAG00000010312)	ENSMGAG00000015907	ENSMGAG00000010354	ENSMGAG00000018582	ENSMGAG00000010359	ENSMGAG00000010373	ENSMGAG00000021055	ENSMGAG00000010393	ENSMGAG00000019714	ENSMGAG00000010449	ENSMGAG00000010423	LRP2 (ENSMGAG00000010459)
Turkey	MODERN SPECIES		UNC50 (ENSMGAG00000020765)	MGAT4A (ENSMGAG00000014782)	CRACDL (ENSMGAG00000014783)	PDCL3 (ENSMGAG00000014798) #13	TSGA10 (ENSMGAG00000014784)	ENSMGAG00000021378	ENSMGAG00000015501	ENSMGAG00000015504	NPAS2 (ENSMGAG00000014799) #14	ENSMGAG00000014800 #16	TBC1D8 (ENSMGAG00000014801) #17	CNOT11 (ENSMGAG00000014802) #18	RNF149 (ENSMGAG00000014803) #19	CREG2 (ENSMGAG00000014804)	RFX8 (ENSMGAG00000014805) #21	MAP4K4 (ENSMGAG00000014806) #22	IL1R2 (ENSMGAG00000014807) #23	IL1RL2 (ENSMGAG00000014809) #26	IL1RL1 (ENSMGAG00000014810) #27	IL18R1 (ENSMGAG00000014811) #28	IL18RAP (ENSMGAG00000014812) #29	SLC9A4 (ENSMGAG00000014813) #30	SLC9A2 (ENSMGAG00000016705) #31	MFSD9 (ENSMGAG00000014814) #32	TMEM182 (ENSMGAG00000014815) #33	MRPS9 (ENSMGAG00000014818) #35	TGFBRAP1 (ENSMGAG00000014819) #37	C2orf49 (ENSMGAG00000014820)	FHL2 (ENSMGAG00000014821)	NCK2 (ENSMGAG00000014822)	ECRG4 (ENSMGAG00000014823)
Anura	ANCESTRAL SPECIES	23	ENSGT00940000158714	ENSGT01100000263502.A.a.a.a.b	ENSGT00940000157868	ENSGT00390000000145	ENSGT01100000263996	ENSGT00940000157728.b	ENSGT00940000157128 #10	ENSGT00940000173424	ENSGT00940000154295 #13	ENSGT00940000160744 #14	ENSGT00950000183030 #16	ENSGT00940000158977 #17	ENSGT00390000006356 #18	ENSGT00940000161020 #19	ENSGT00390000005914.b	ENSGT00940000155063 #22
Frog	MODERN SPECIES	2	ecrg4 (ENSXETG00000021670)	ENSXETG00000037291	nck2 (ENSXETG00000021669)	chst10 (ENSXETG00000013820) #10	ENSXETG00000038428	pdcl3 (ENSXETG00000046224) #13	npas2 (ENSXETG00000021769) #14	rpl31 (ENSXETG00000024667) #16	ENSXETG00000041148	ENSXETG00000041170	tbc1d8 (ENSXETG00000004999) #17	cnot11 (ENSXETG00000033799) #18	rnf149 (ENSXETG00000004960) #19	ENSXETG00000047625	creg2 (ENSXETG00000030769)	map4k4 (ENSXETG00000031965) #22	ENSXETG00000043197	il1r1 (ENSXETG00000040858) #26	il1r2 (ENSXETG00000004981) #23	il18r1.1 (ENSXETG00000041012) #28	ENSXETG00000049325 #28	il18rap (ENSXETG00000031567) #29	slc9a4 (ENSXETG00000033166) #30	slc9a2 (ENSXETG00000040616) #31	mfsd9 (ENSXETG00000038450) #32	tmem182 (ENSXETG00000030826) #33	ENSXETG00000045238	mrps9 (ENSXETG00000002583) #35	gpr45 (ENSXETG00000002582) #36	tgfbrap1 (ENSXETG00000002581) #37	c2orf49 (ENSXETG00000002578)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000006858	NCK2 (ENSLLEG00000006868)	ENSLLEG00000006904	CHST10 (ENSLLEG00000006921) #10	ENSLLEG00000006982	PDCL3 (ENSLLEG00000007127) #13	NPAS2 (ENSLLEG00000007230) #14	ENSLLEG00000007552	CREG2 (ENSLLEG00000007562)	RNF149 (ENSLLEG00000007590) #19	CNOT11 (ENSLLEG00000007670) #18	TBC1D8 (ENSLLEG00000007928) #17	ENSLLEG00000008168	ENSLLEG00000008185 #16	ENSLLEG00000008290	MAP4K4 (ENSLLEG00000008454) #22	ENSLLEG00000011044	ENSLLEG00000011071	IL1R2 (ENSLLEG00000011166) #23	ENSLLEG00000011319	IL1RL2 (ENSLLEG00000011375) #26	ENSLLEG00000011566	ENSLLEG00000011587 ##23	ENSLLEG00000011723 #28	ENSLLEG00000011832 #28	IL18RAP (ENSLLEG00000011866) #29	SLC9A4 (ENSLLEG00000011943) #30	ENSLLEG00000012044	SLC9A2 (ENSLLEG00000012057) #31	MFSD9 (ENSLLEG00000012150) #32	TMEM182 (ENSLLEG00000012243) #33