Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00940000164857	ENSGT00940000157232	ENSGT00940000165617	ENSGT00550000074800.a.a.a	ENSGT00940000163195.B.b	ENSGT01090000260278	ENSGT00390000002753	ENSGT00940000158859.e	ENSGT01030000234607.B ##13	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063 #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000159309	ENSGT00940000160673	ENSGT00390000017846	ENSGT00940000155526.j	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f	ENSGT00940000178351	ENSGT00940000155526.i.a	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	124																ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c	ENSGT00390000019377.b.e	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000160749.b	ENSGT00940000158655.e	ENSGT00940000160898	ENSGT00950000183071.a.a.a.e.b	ENSGT01030000234621.F.c
Acanthomorphata	ANCESTRAL SPECIES	85																ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b	ENSGT00390000012496.a.c	ENSGT00390000019377.b.e	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000153931.b.b.d	ENSGT00940000153931.b.b.c	ENSGT00940000155232.t.b.a	ENSGT00940000166422	ENSGT00940000155232.t.a.b.b
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00530000063873.A	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00940000165996	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000157358 #35	ENSGT00940000154633.id.b #36	ENSGT00940000156916 #37
Climbing perch	MODERN SPECIES	11	ENSATEG00000003091 #7	abcb6a (ENSATEG00000003125) #8	cnppd1 (ENSATEG00000027513) #9	ENSATEG00000003266 #10	retreg2 (ENSATEG00000003440) #11	mdh1b (ENSATEG00000003523) #12	ENSATEG00000003650 #13	ENSATEG00000003664 #14	raph1b (ENSATEG00000003709) #15	spp2 (ENSATEG00000003777) #16	alg11 (ENSATEG00000003821) #17	cpb2 (ENSATEG00000003852) #18	zc3h13 (ENSATEG00000003937) #19	ENSATEG00000003942 #20	ENSATEG00000029382 #21	ENSATEG00000003973 #22	ENSATEG00000004134 #23	ENSATEG00000004149 #24	ENSATEG00000004221 #25	cab39l (ENSATEG00000004327) #26	cdadc1 (ENSATEG00000026372) #27	rcbtb1 (ENSATEG00000004379) #28	ENSATEG00000004442 #29	tubgcp3 (ENSATEG00000004470) #30	ENSATEG00000004602 #31	ENSATEG00000004770 #32	arhgef7b (ENSATEG00000004776) #33	ENSATEG00000004855 #34	ENSATEG00000004878 #35	ENSATEG00000004989 #36	ENSATEG00000005000 #37
Siamese fighting fish	MODERN SPECIES	10	cnppd1 (ENSBSLG00000003184) #9	ENSBSLG00000003198 #10	retreg2 (ENSBSLG00000003229) #11	mdh1b (ENSBSLG00000003231) #12	ENSBSLG00000003233 #13	ENSBSLG00000003239 #14	mdh1b (ENSBSLG00000003242) #12	ENSBSLG00000003247 #13	ENSBSLG00000003260	spp2 (ENSBSLG00000003287) #16	alg11 (ENSBSLG00000003291) #17	zc3h13 (ENSBSLG00000003293) #19	rpl31 (ENSBSLG00000003300) #20	chst10 (ENSBSLG00000003307) #21	chst10 (ENSBSLG00000003312) #21	MAP4K4 (ENSBSLG00000003402) #22	ENSBSLG00000003461 #23	RDX (ENSBSLG00000003472) #24	ENSBSLG00000003476	ENSBSLG00000003477	MCF2L (ENSBSLG00000003479) #25	cab39l (ENSBSLG00000003481) #26	cdadc1 (ENSBSLG00000003482) #27	rcbtb1 (ENSBSLG00000003483) #28	FGF14 (ENSBSLG00000003484) #29	tubgcp3 (ENSBSLG00000003486) #30	ENSBSLG00000003490 #31	SOX1 (ENSBSLG00000003504) #32	arhgef7b (ENSBSLG00000003511) #33	ENSBSLG00000003518 #34	pspc1 (ENSBSLG00000003519) #35
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021930	ENSMAMG00000021928	ENSMAMG00000021916	ENSMAMG00000021912	ENSMAMG00000021910	ENSMAMG00000021908	ENSMAMG00000021907	ENSMAMG00000021906	ENSMAMG00000021899	ENSMAMG00000021893	ENSMAMG00000021892	ENSMAMG00000021889 #24	ENSMAMG00000021794 #23	ENSMAMG00000021790 #20	ENSMAMG00000021787 #21	ENSMAMG00000021762 #22	ENSMAMG00000021735 #25	cab39l (ENSMAMG00000021730) #26	cdadc1 (ENSMAMG00000021707) #27	rcbtb1 (ENSMAMG00000021704) #28	ENSMAMG00000021696 #29	tubgcp3 (ENSMAMG00000021681) #30	ENSMAMG00000021662 #31	ENSMAMG00000021660 #32	arhgef7b (ENSMAMG00000021649) #33	ENSMAMG00000021642 #34	ENSMAMG00000021635	ENSMAMG00000021632	ENSMAMG00000021618	ENSMAMG00000021611	ENSMAMG00000021607
Carangaria	ANCESTRAL SPECIES	23	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT01030000235083	ENSGT00940000165996	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT01030000235083	ENSGT00940000165996	ENSGT00950000183030.j #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Seriola	ANCESTRAL SPECIES	126	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT01030000235083	ENSGT00940000165996	ENSGT00950000183030.j #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23
Greater amberjack	MODERN SPECIES	246	nrp2a (ENSSDUG00000021601) #7	abcb6a (ENSSDUG00000021632) #8	cnppd1 (ENSSDUG00000021656) #9	ENSSDUG00000021661 #10	retreg2 (ENSSDUG00000021672) #11	mdh1b (ENSSDUG00000021689) #12	ENSSDUG00000021702 #13	ENSSDUG00000021713 #14	raph1b (ENSSDUG00000021717) #15	ENSSDUG00000021755	alg11 (ENSSDUG00000021786) #17	cpb2 (ENSSDUG00000021792) #18	zc3h13 (ENSSDUG00000021808) #19	rpl31 (ENSSDUG00000021821) #20	chst10 (ENSSDUG00000021826) #21	MAP4K4 (ENSSDUG00000021842) #22	ENSSDUG00000021864 #23
Yellowtail amberjack	MODERN SPECIES	3221	abcb6a (ENSSLDG00000012975) #8	cnppd1 (ENSSLDG00000012942) #9	ENSSLDG00000012921 #10	retreg2 (ENSSLDG00000012892) #11	mdh1b (ENSSLDG00000012802) #12	ENSSLDG00000012753 #13	ENSSLDG00000012772 #14	raph1b (ENSSLDG00000012713) #15	spp2 (ENSSLDG00000012693) #16	alg11 (ENSSLDG00000012678) #17	cpb2 (ENSSLDG00000012664) #18	ENSSLDG00000012646	ENSSLDG00000012610	chst10 (ENSSLDG00000012582) #21	rpl31 (ENSSLDG00000012384) #20	MAP4K4 (ENSSLDG00000012306) #22	ENSSLDG00000012268 #23	ENSSLDG00000012252	hyi (ENSSLDG00000012220)	ENSSLDG00000012201	SZT2 (ENSSLDG00000012083)	ENSSLDG00000012059	DDX10 (ENSSLDG00000012041)	ENSSLDG00000012017	ENSSLDG00000011998	ENSSLDG00000011964	pcdh18b (ENSSLDG00000011936)	ENSSLDG00000011918	pcdh10b (ENSSLDG00000011899)	hspa9 (ENSSLDG00000011830)	ENSSLDG00000011811
Barramundi perch	MODERN SPECIES	157	nrp2a (ENSLCAG00010027064) #7	ENSLCAG00010027080	abcb6a (ENSLCAG00010027087) #8	cnppd1 (ENSLCAG00010027105) #9	ENSLCAG00010027107 #10	retreg2 (ENSLCAG00010027109) #11	mdh1b (ENSLCAG00010027110) #12	ENSLCAG00010027111 #13	ENSLCAG00010027112 #14	raph1b (ENSLCAG00010027114) #15	spp2 (ENSLCAG00010027126) #16	alg11 (ENSLCAG00010027128) #17	cpb2 (ENSLCAG00010027135) #18	rpl31 (ENSLCAG00010027148) #20	chst10 (ENSLCAG00010027159) #21	MAP4K4 (ENSLCAG00010027240) #22
Pleuronectoidei	ANCESTRAL SPECIES	42	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.c
Turbot	MODERN SPECIES		ENSSMAG00000006232 #7	abcb6a (ENSSMAG00000006353) #8	cnppd1 (ENSSMAG00000036984) #9	ENSSMAG00000006464 #10	retreg2 (ENSSMAG00000006969) #11	mdh1b (ENSSMAG00000006973) #12	ENSSMAG00000006986 #13	ENSSMAG00000006998 #14	raph1b (ENSSMAG00000007021) #15	spp2 (ENSSMAG00000028508) #16	alg11 (ENSSMAG00000007070) #17	cpb2 (ENSSMAG00000007082) #18	zc3h13 (ENSSMAG00000007110) #19	ENSSMAG00000007130 #20	ENSSMAG00000025555 #21	ENSSMAG00000007176 #22	ENSSMAG00000031623 #23	ENSSMAG00000005339 #24	ENSSMAG00000005108 #25	cab39l (ENSSMAG00000005071) #26	cdadc1 (ENSSMAG00000005048) #27	rcbtb1 (ENSSMAG00000004983) #28	ENSSMAG00000004940 #29	tubgcp3 (ENSSMAG00000004863) #30	ENSSMAG00000004696 #31	ENSSMAG00000004680 #32	arhgef7b (ENSSMAG00000004589) #33	ENSSMAG00000004428	ENSSMAG00000004318 #34	ENSSMAG00000004291	ENSSMAG00000004288
Tongue sole	MODERN SPECIES	5	pard3ba (ENSCSEG00000010523)	abcb6a (ENSCSEG00000010487) #8	cnppd1 (ENSCSEG00000010476) #9	ENSCSEG00000010452 #10	retreg2 (ENSCSEG00000010438) #11	mdh1b (ENSCSEG00000010427) #12	ENSCSEG00000010396 #13	cd28 (ENSCSEG00000010375) #14	raph1b (ENSCSEG00000010358) #15	raph1b (ENSCSEG00000010351) #15	alg11 (ENSCSEG00000010341) #17	cpb2 (ENSCSEG00000010303) #18	zc3h13 (ENSCSEG00000010275) #19	rpl31 (ENSCSEG00000010181) #20	chst10 (ENSCSEG00000010162) #21	MAP4K4 (ENSCSEG00000010125) #22	ENSCSEG00000010073 #23	abcc4 (ENSCSEG00000010028)	lrsam1 (ENSCSEG00000009942)	actr1b (ENSCSEG00000009917)	cdk9 (ENSCSEG00000009903)	fpgs (ENSCSEG00000009878)	reep5 (ENSCSEG00000009866)	sptlc1 (ENSCSEG00000009841)	auh (ENSCSEG00000009830)	nfil3 (ENSCSEG00000009825)	ROR2 (ENSCSEG00000009796)	syk (ENSCSEG00000009733)	chd1 (ENSCSEG00000009553)	megf10 (ENSCSEG00000009495)	pmpcb (ENSCSEG00000009485)
Ballan wrasse	MODERN SPECIES	914																MAP4K4 (ENSLBEG00000003636) #22	ENSLBEG00000003547 #23	ENSLBEG00000003510
Eupecaria_C	ANCESTRAL SPECIES	27	ENSGT00970000198177	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	31	ENSGT00970000198177	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553	ENSGT00940000153514.b.m.b
European seabass	MODERN SPECIES	15	ENSDLAG00005015590 #7	ENSDLAG00005017020	abcb6a (ENSDLAG00005017043) #8	cnppd1 (ENSDLAG00005017316) #9	ENSDLAG00005017447 #10	retreg2 (ENSDLAG00005026804) #11	mdh1b (ENSDLAG00005017625) #12	ENSDLAG00005017672 #14	raph1b (ENSDLAG00005017704) #15	spp2 (ENSDLAG00005026585) #16	alg11 (ENSDLAG00005018603) #17	cpb2 (ENSDLAG00005018614) #18	zc3h13 (ENSDLAG00005018626) #19	ENSDLAG00005018637 #20	ENSDLAG00005032912 #21	ENSDLAG00005018949 #22	ENSDLAG00005029785 #23	ENSDLAG00005024982 #24	ENSDLAG00005025157 #25	ENSDLAG00005025502 #26	rcbtb1 (ENSDLAG00005025521) #28	ENSDLAG00005025543 #29	tubgcp3 (ENSDLAG00005025561) #30	ENSDLAG00005025632 #31	ENSDLAG00005025656 #32	arhgef7b (ENSDLAG00005025674) #33	ENSDLAG00005025778 #34	ENSDLAG00005025847	ENSDLAG00005025856 #34	ENSDLAG00005025657	ENSDLAG00005025864
Large yellow croaker	MODERN SPECIES	486	nrp2a (ENSLCRG00005010619) #7	abcb6a (ENSLCRG00005012185) #8	cnppd1 (ENSLCRG00005012371) #9	ENSLCRG00005012462 #10	retreg2 (ENSLCRG00005013249) #11	mdh1b (ENSLCRG00005013252) #12	ENSLCRG00005013256 #13	ENSLCRG00005013258 #14	raph1b (ENSLCRG00005013261) #15	spp2 (ENSLCRG00005013265) #16	alg11 (ENSLCRG00005013267) #17	cpb2 (ENSLCRG00005013268) #18	zc3h13 (ENSLCRG00005013271) #19	rpl31 (ENSLCRG00005013274) #20	chst10 (ENSLCRG00005013277) #21	MAP4K4 (ENSLCRG00005013293) #22	ENSLCRG00005014340	sh3bp4a (ENSLCRG00005014341)	s100b (ENSLCRG00005014342)	ENSLCRG00005014345	ahr1b (ENSLCRG00005014375)	ENSLCRG00005014383	mfsd6a (ENSLCRG00005014384)	nab1a (ENSLCRG00005014385)	glsa (ENSLCRG00005014400)	stat1a (ENSLCRG00005016792)	mstna (ENSLCRG00005016812)	ALS2 (ENSLCRG00005016821)	MPP4 (ENSLCRG00005016829)	tmem237b (ENSLCRG00005016841)	cyp20a1 (ENSLCRG00005016846)
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010017193	nrp2a (ENSSAUG00010016327) #7	abcb6a (ENSSAUG00010016287) #8	cnppd1 (ENSSAUG00010016285) #9	ENSSAUG00010015871 #10	retreg2 (ENSSAUG00010015858) #11	mdh1b (ENSSAUG00010015856) #12	ENSSAUG00010015853 #13	ENSSAUG00010015850 #14	raph1b (ENSSAUG00010015668) #15	spp2 (ENSSAUG00010015659) #16	alg11 (ENSSAUG00010015656) #17	cpb2 (ENSSAUG00010015649) #18	zc3h13 (ENSSAUG00010015648) #19	rpl31 (ENSSAUG00010015646) #20	MAP4K4 (ENSSAUG00010013987) #22	ENSSAUG00010013896 #23	ENSSAUG00010010686 #24	MCF2L (ENSSAUG00010010458) #25	cab39l (ENSSAUG00010010440) #26	cdadc1 (ENSSAUG00010010438) #27	rcbtb1 (ENSSAUG00010010146) #28	FGF14 (ENSSAUG00010010139) #29	tubgcp3 (ENSSAUG00010010123) #30	ATP11A (ENSSAUG00010007402) #31	SOX1 (ENSSAUG00010007362) #32	arhgef7b (ENSSAUG00010005047) #33	ENSSAUG00010005038	ENSSAUG00010002968 #34	SATB2 (ENSSAUG00010002841)	crygm6 (ENSSAUG00010002812)
Perciformes	ANCESTRAL SPECIES	24	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00940000165996	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT01030000235083	ENSGT00940000165996	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Lumpfish	MODERN SPECIES	11	ENSCLMG00005006260	cnppd1 (ENSCLMG00005006258) #9	ENSCLMG00005004978 #10	retreg2 (ENSCLMG00005004966) #11	mdh1b (ENSCLMG00005004965) #12	ENSCLMG00005004962 #13	ENSCLMG00005004959 #14	raph1b (ENSCLMG00005004947) #15	spp2 (ENSCLMG00005004942) #16	alg11 (ENSCLMG00005004939) #17	cpb2 (ENSCLMG00005004907) #18	ENSCLMG00005004904	ENSCLMG00005004902	rpl31 (ENSCLMG00005004896) #20	chst10 (ENSCLMG00005004894) #21	MAP4K4 (ENSCLMG00005002739) #22	ENSCLMG00005002730	ENSCLMG00005002728 #23	RDX (ENSCLMG00005000795) #24	ENSCLMG00005000777	MCF2L (ENSCLMG00005000628) #25	cab39l (ENSCLMG00005000599) #26	cdadc1 (ENSCLMG00005000549) #27	rcbtb1 (ENSCLMG00005000540) #28	ENSCLMG00005000536 #29	tubgcp3 (ENSCLMG00005000524) #30	ATP11A (ENSCLMG00005000052) #31	SOX1 (ENSCLMG00005019072) #32	arhgef7b (ENSCLMG00005017440) #33	ENSCLMG00005017235 #34	ENSCLMG00005017219
Stickleback	MODERN SPECIES		nrp2a (ENSGACG00000015122) #7	abcb6a (ENSGACG00000015126) #8	cnppd1 (ENSGACG00000015132) #9	ENSGACG00000015135 #10	retreg2 (ENSGACG00000015143) #11	mdh1b (ENSGACG00000015146) #12	ENSGACG00000015149	ENSGACG00000015151	raph1b (ENSGACG00000015152) #15	spp2 (ENSGACG00000015156) #16	alg11 (ENSGACG00000015159) #17	cpb2 (ENSGACG00000015162) #18	zc3h13 (ENSGACG00000015166) #19	rpl31 (ENSGACG00000015169) #20	chst10 (ENSGACG00000015172) #21	MAP4K4 (ENSGACG00000015177) #22	tmem47 (ENSGACG00000015180)	DMD (ENSGACG00000015181)	ENSGACG00000015186	gtf3c3 (ENSGACG00000015188)	HECW2 (ENSGACG00000015192)	STS (ENSGACG00000015197)	pnpla4 (ENSGACG00000015198)	pudp (ENSGACG00000015201)	nlgn4 (ENSGACG00000015207)	PRKX (ENSGACG00000015210)	MXRA5 (ENSGACG00000015213)	gyg2 (ENSGACG00000015217)	cd99 (ENSGACG00000015223)	cep70 (ENSGACG00000015229)	sowahcb (ENSGACG00000015234)
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Pike perch	MODERN SPECIES	9	abcb6a (ENSSLUG00000005199) #8	cnppd1 (ENSSLUG00000005142) #9	ENSSLUG00000005088 #10	retreg2 (ENSSLUG00000023431) #11	mdh1b (ENSSLUG00000023427) #12	ENSSLUG00000023420 #13	ENSSLUG00000023416	ENSSLUG00000023414 #14	raph1b (ENSSLUG00000023307) #15	spp2 (ENSSLUG00000023287) #16	alg11 (ENSSLUG00000023283) #17	cpb2 (ENSSLUG00000023268) #18	ENSSLUG00000023259	rpl31 (ENSSLUG00000023256) #20	chst10 (ENSSLUG00000023251) #21	MAP4K4 (ENSSLUG00000021448) #22	ENSSLUG00000021298 #23	ENSSLUG00000020701 #24	MCF2L (ENSSLUG00000019427) #25	cab39l (ENSSLUG00000019371) #26	cdadc1 (ENSSLUG00000019365) #27	rcbtb1 (ENSSLUG00000019117) #28	ENSSLUG00000019105 #29	tubgcp3 (ENSSLUG00000019071) #30	ATP11A (ENSSLUG00000018831) #31	ENSSLUG00000018752	SOX1 (ENSSLUG00000018748) #32	ENSSLUG00000018742	arhgef7b (ENSSLUG00000018682) #33	ENSSLUG00000018666 #34	ENSSLUG00000018647
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000023549	nrp2a (ENSCGOG00000023135) #7	abcb6a (ENSCGOG00000022961) #8	cnppd1 (ENSCGOG00000022956) #9	ENSCGOG00000022953 #10	retreg2 (ENSCGOG00000022949) #11	mdh1b (ENSCGOG00000022940) #12	ENSCGOG00000022938 #13	ENSCGOG00000022937 #14	raph1b (ENSCGOG00000022764) #15	spp2 (ENSCGOG00000022749) #16	alg11 (ENSCGOG00000022747) #17	cpb2 (ENSCGOG00000022743) #18	rpl31 (ENSCGOG00000022725) #20	chst10 (ENSCGOG00000022724) #21	ENSCGOG00000017296 #22	ENSCGOG00000017118 #23	RDX (ENSCGOG00000013573) #24	MCF2L (ENSCGOG00000012370) #25	cab39l (ENSCGOG00000012336) #26	cdadc1 (ENSCGOG00000012332) #27	rcbtb1 (ENSCGOG00000012009) #28	FGF14 (ENSCGOG00000011997) #29	tubgcp3 (ENSCGOG00000011368) #30	ATP11A (ENSCGOG00000011033) #31	SOX1 (ENSCGOG00000011013) #32	arhgef7b (ENSCGOG00000009531) #33	ENSCGOG00000009396 #34	ENSCGOG00000009350	ENSCGOG00000009342	ENSCGOG00000009326
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00530000063873.A	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b #34
Fugu	MODERN SPECIES	20	abcb6a (ENSTRUG00000009019) #8	cnppd1 (ENSTRUG00000008996) #9	ENSTRUG00000008850 #10	retreg2 (ENSTRUG00000020062) #11	ENSTRUG00000027970	ENSTRUG00000021914	mdh1b (ENSTRUG00000008621) #12	ENSTRUG00000019725 #13	cd28 (ENSTRUG00000008513)	raph1b (ENSTRUG00000008306) #15	alg11 (ENSTRUG00000008200) #17	cpb2 (ENSTRUG00000007671) #18	ENSTRUG00000030462	rpl31 (ENSTRUG00000007359) #20	chst10 (ENSTRUG00000007251) #21	MAP4K4 (ENSTRUG00000006376) #22	ENSTRUG00000022519 #23	RDX (ENSTRUG00000005857) #24	MCF2L (ENSTRUG00000005283) #25	cab39l (ENSTRUG00000005008) #26	cdadc1 (ENSTRUG00000004808) #27	ENSTRUG00000021682	ENSTRUG00000003862	ENSTRUG00000003573	ENSTRUG00000028934	ENSTRUG00000021847	fam184aa (ENSTRUG00000017364)	ENSTRUG00000017359	ENSTRUG00000017357	ENSTRUG00000028094	ENSTRUG00000017337 #34
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00940000165996	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00940000164275.f.c	ENSGT00390000018553
Cichlidae	ANCESTRAL SPECIES	30	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000160560.b.f.a.b.a.b	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	25	ENSGT00940000156160.b.a.b #8	ENSGT00940000156160.b.a.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	29	ENSGT00940000156160.b.a.b #8	ENSGT00940000156160.b.a.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d
Haplochromini	ANCESTRAL SPECIES	26	ENSGT00940000156160.b.a.b #8	ENSGT00940000156160.b.a.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d.e.a
Burton s mouthbrooder	MODERN SPECIES	303	abcb6a (ENSHBUG00000007448) #8	abcb6a (ENSHBUG00000007414) #8	cnppd1 (ENSHBUG00000007382) #9	ENSHBUG00000007370 #10	retreg2 (ENSHBUG00000007360) #11	mdh1b (ENSHBUG00000007343) #12	ENSHBUG00000007258 #13	ENSHBUG00000007244 #14	raph1b (ENSHBUG00000007232) #15	spp2 (ENSHBUG00000007129) #16	ENSHBUG00000007121 #17	cpb2 (ENSHBUG00000007107) #18	zc3h13 (ENSHBUG00000007100) #19	rpl31 (ENSHBUG00000007089) #20	chst10 (ENSHBUG00000007072) #21	MAP4K4 (ENSHBUG00000007019) #22	ENSHBUG00000006831 #23	ENSHBUG00000006815 #24	MCF2L (ENSHBUG00000006771) #25	cab39l (ENSHBUG00000006743) #26	cdadc1 (ENSHBUG00000006723) #27	rcbtb1 (ENSHBUG00000006708) #28	ENSHBUG00000006660 #29	tubgcp3 (ENSHBUG00000006619) #30	ATP11A (ENSHBUG00000006502) #31
Haplochromini_A	ANCESTRAL SPECIES	29	ENSGT00940000156160.b.a.b #8	ENSGT00940000156160.b.a.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000160560.b.f.a.b.a.b.g.b	ENSGT00940000160560.b.f.a.b.a.b.h	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d.e.a
Haplochromini_B	ANCESTRAL SPECIES	38	ENSGT00940000156160.b.a.b #8	ENSGT00940000156160.b.a.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00390000009001 #16	ENSGT00550000075118.k #17	ENSGT00940000159160.e #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d.e.a	ENSGT00940000164275.f.d.e.b	ENSGT00950000182837.b.b.c.b
Zebra mbuna	MODERN SPECIES	1105	abcb6a (ENSMZEG00005005732) #8	cnppd1 (ENSMZEG00005005755) #9	ENSMZEG00005005775 #10	retreg2 (ENSMZEG00005005803) #11	mdh1b (ENSMZEG00005005818) #12	ENSMZEG00005005856 #13	ENSMZEG00005005871 #14	raph1b (ENSMZEG00005005956) #15	spp2 (ENSMZEG00005007388) #16	raph1b (ENSMZEG00005007411) #15	ENSMZEG00005007444	cpb2 (ENSMZEG00005007453) #18	zc3h13 (ENSMZEG00005007473) #19	rpl31 (ENSMZEG00005007495) #20	chst10 (ENSMZEG00005007508) #21	MAP4K4 (ENSMZEG00005007556) #22	ENSMZEG00005007718 #23	ENSMZEG00005007733 #24	MCF2L (ENSMZEG00005007790) #25	cab39l (ENSMZEG00005007925) #26	cdadc1 (ENSMZEG00005007951) #27	rcbtb1 (ENSMZEG00005007967) #28	ENSMZEG00005007986 #29	ENSMZEG00005008003 ##29	tubgcp3 (ENSMZEG00005008024) #30	ATP11A (ENSMZEG00005008109) #31	SOX1 (ENSMZEG00005008255) #32	ENSMZEG00005008263	ENSMZEG00005008283	ENSMZEG00005008301	ENSMZEG00005008329
Eastern happy	MODERN SPECIES	14	abcb6a (ENSACLG00000027863) #8	abcb6a (ENSACLG00000027885) #8	cnppd1 (ENSACLG00000027887) #9	ENSACLG00000027888 #10	retreg2 (ENSACLG00000027890) #11	mdh1b (ENSACLG00000027891) #12	ENSACLG00000027894 #13	ENSACLG00000027896 #14	raph1b (ENSACLG00000027897) #15	spp2 (ENSACLG00000027900) #16	alg11 (ENSACLG00000027899) #17	cpb2 (ENSACLG00000027901) #18	zc3h13 (ENSACLG00000027909) #19	rpl31 (ENSACLG00000027911) #20	chst10 (ENSACLG00000027912) #21	MAP4K4 (ENSACLG00000027913) #22	ENSACLG00000027924 #23	ENSACLG00000001047 #24	MCF2L (ENSACLG00000001155) #25	cab39l (ENSACLG00000001540) #26	cdadc1 (ENSACLG00000001587) #27	ENSACLG00000001609	ENSACLG00000001652	arhgef7b (ENSACLG00000001666) #33	ENSACLG00000001793 #34	ENSACLG00000001817	ENSACLG00000001848	CACNB4 (ENSACLG00000001924)	SEMA5B (ENSACLG00000001991)	kpnb3 (ENSACLG00000002083)	atg13 (ENSACLG00000002212)
P. nyererei	MODERN SPECIES	335	nrp2a (ENSPNYG00000016558) #7	abcb6a (ENSPNYG00000016502) #8	cnppd1 (ENSPNYG00000016487) #9	ENSPNYG00000016453 #10	retreg2 (ENSPNYG00000016414) #11	mdh1b (ENSPNYG00000016342) #12	ENSPNYG00000016302 #13	ENSPNYG00000016292 #14	raph1b (ENSPNYG00000016134) #15	spp2 (ENSPNYG00000016100) #16	alg11 (ENSPNYG00000016075) #17	cpb2 (ENSPNYG00000016049) #18	zc3h13 (ENSPNYG00000016000) #19	rpl31 (ENSPNYG00000015985) #20	chst10 (ENSPNYG00000015962) #21	MAP4K4 (ENSPNYG00000015893) #22	ENSPNYG00000015874	ENSPNYG00000015828 #24	MCF2L (ENSPNYG00000015707) #25	cab39l (ENSPNYG00000015625) #26	cdadc1 (ENSPNYG00000015610) #27	rcbtb1 (ENSPNYG00000015578) #28	ENSPNYG00000015558 #29	tubgcp3 (ENSPNYG00000015478) #30	ATP11A (ENSPNYG00000015407) #31
Lyretail cichlid	MODERN SPECIES	422	abcb6a (ENSNBRG00000007882) #8	cnppd1 (ENSNBRG00000007866) #9	ENSNBRG00000007411 #10	retreg2 (ENSNBRG00000007319) #11	mdh1b (ENSNBRG00000007258) #12	ENSNBRG00000007232 #14	ENSNBRG00000007222 #13	raph1b (ENSNBRG00000007182) #15	ENSNBRG00000007138 #16	alg11 (ENSNBRG00000007121) #17	cpb2 (ENSNBRG00000007109) #18	ENSNBRG00000007093	rpl31 (ENSNBRG00000007076) #20	chst10 (ENSNBRG00000007049) #21	ENSNBRG00000007007	ENSNBRG00000006985 #22	ENSNBRG00000006978 #23	RDX (ENSNBRG00000006927) #24	MCF2L (ENSNBRG00000006866) #25	cab39l (ENSNBRG00000006797) #26	cdadc1 (ENSNBRG00000006723) #27	rcbtb1 (ENSNBRG00000006687) #28	ENSNBRG00000006660 #29	tubgcp3 (ENSNBRG00000006602) #30	ATP11A (ENSNBRG00000006492) #31	ENSNBRG00000006414	ENSNBRG00000006386
Nile tilapia	MODERN SPECIES	14	nrp2a (ENSONIG00000012186) #7	abcb6a (ENSONIG00000012196) #8	cnppd1 (ENSONIG00000040328) #9	ENSONIG00000012200 #10	retreg2 (ENSONIG00000038099) #11	mdh1b (ENSONIG00000012210) #12	ENSONIG00000012215 #13	ENSONIG00000037064 #14	raph1b (ENSONIG00000012220) #15	spp2 (ENSONIG00000039515) #16	alg11 (ENSONIG00000012226) #17	cpb2 (ENSONIG00000012227) #18	zc3h13 (ENSONIG00000012236) #19	rpl31 (ENSONIG00000033747) #20	chst10 (ENSONIG00000012254) #21	MAP4K4 (ENSONIG00000012256) #22	ENSONIG00000012268 #23	ENSONIG00000012273 #24	MCF2L (ENSONIG00000012277) #25	cab39l (ENSONIG00000012288) #26	cdadc1 (ENSONIG00000012296) #27	rcbtb1 (ENSONIG00000012298) #28	ENSONIG00000012303 #29	tubgcp3 (ENSONIG00000012305) #30	ATP11A (ENSONIG00000012309) #31	SOX1 (ENSONIG00000021020) #32	ENSONIG00000013227	arhgef7b (ENSONIG00000015169) #33	ENSONIG00000015175 #34	ENSONIG00000031938	CACNB4 (ENSONIG00000015177)
Midas cichlid	MODERN SPECIES	353	nrp2a (ENSACIG00000000266) #7	abcb6a (ENSACIG00000000321) #8	cnppd1 (ENSACIG00000000528) #9	ENSACIG00000000557 #10	retreg2 (ENSACIG00000000674) #11	ENSACIG00000000704 #13	mdh1b (ENSACIG00000000744) #12	ENSACIG00000000837 #14	raph1b (ENSACIG00000000865) #15	spp2 (ENSACIG00000001105) #16	alg11 (ENSACIG00000001151) #17	cpb2 (ENSACIG00000001169) #18	zc3h13 (ENSACIG00000001200) #19	rpl31 (ENSACIG00000001260) #20	chst10 (ENSACIG00000001277) #21	MAP4K4 (ENSACIG00000001297) #22	ENSACIG00000001362 #23	ENSACIG00000001412 #24	MCF2L (ENSACIG00000001448) #25	cab39l (ENSACIG00000001525) #26	cdadc1 (ENSACIG00000001563) #27
Pomacentridae	ANCESTRAL SPECIES	71	ENSGT00940000155972.A	ENSGT00940000176946.a	ENSGT00940000156449.b.a	ENSGT00950000183046.a.a.gb	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C.re	ENSGT00940000154342.C.qe	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a.b #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00390000018553	ENSGT00940000153514.b.m.b	ENSGT00940000166946
Pomacentridae_A	ANCESTRAL SPECIES	98	ENSGT00940000155972.A	ENSGT00940000176946.a	ENSGT00940000156449.b.a	ENSGT00950000183046.a.a.gb	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C.re	ENSGT00940000154342.C.qe	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22
Amphiprion	ANCESTRAL SPECIES	192	ENSGT00940000155995.e.a	ENSGT00940000155972.A	ENSGT00940000176946.a	ENSGT00940000156449.b.a	ENSGT00950000183046.a.a.gb	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00940000153534.A	ENSGT00390000003758	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C.qe	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22
Clown anemonefish	MODERN SPECIES	731	ap1s2 (ENSAOCG00000024111)	PHKA2 (ENSAOCG00000024162)	ppef1 (ENSAOCG00000024194)	RS1 (ENSAOCG00000024210)	cdkl5 (ENSAOCG00000024243)	SCML2 (ENSAOCG00000024259)	NHS (ENSAOCG00000024274)	ace2 (ENSAOCG00000001769)	ENSAOCG00000024302	zgc:113276 (ENSAOCG00000024316)	dmd (ENSAOCG00000024530)	gtf3c3 (ENSAOCG00000024580)	HECW2 (ENSAOCG00000024590)	rpl31 (ENSAOCG00000024591) #20	chst10 (ENSAOCG00000024594) #21	MAP4K4 (ENSAOCG00000024616) #22	GAPDH (ENSAOCG00000024626)
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000009702	ENSAPEG00000009906	bmpr2a (ENSAPEG00000009919)	FAM117B (ENSAPEG00000009980)	ical1 (ENSAPEG00000010018)	wdr12 (ENSAPEG00000010107)	nop58 (ENSAPEG00000010178)	ENSAPEG00000010243	tmem47 (ENSAPEG00000010252)	ENSAPEG00000010270	dmd (ENSAPEG00000010447)	gtf3c3 (ENSAPEG00000011007)	HECW2 (ENSAPEG00000011093)	rpl31 (ENSAPEG00000011120) #20	chst10 (ENSAPEG00000011160) #21	MAP4K4 (ENSAPEG00000011232) #22	ENSAPEG00000011443	GAPDH (ENSAPEG00000011459)	ENSAPEG00000011488	sowahcb (ENSAPEG00000011503)	cep70 (ENSAPEG00000011536)	adarb1a (ENSAPEG00000011629)	slx9 (ENSAPEG00000011677)	ENSAPEG00000011685	cnot9 (ENSAPEG00000011704)	ENSAPEG00000011757	DONSON (ENSAPEG00000011848)	runx1 (ENSAPEG00000011997)	ENSAPEG00000012078	ENSAPEG00000012095	ENSAPEG00000012131
Spiny chromis	MODERN SPECIES	844											dmd (ENSAPOG00000013339)	gtf3c3 (ENSAPOG00000012620)	HECW2 (ENSAPOG00000012515)	rpl31 (ENSAPOG00000012374) #20	chst10 (ENSAPOG00000012348) #21	ENSAPOG00000012315 #22
Bicolor damselfish	MODERN SPECIES	456														rpl31 (ENSSPAG00000009164) #20	chst10 (ENSSPAG00000009171) #21	MAP4K4 (ENSSPAG00000009217) #22	ENSSPAG00000009485 #23	RDX (ENSSPAG00000009513) #24	MCF2L (ENSSPAG00000009584) #25	cab39l (ENSSPAG00000009771) #26	cdadc1 (ENSSPAG00000009801) #27	rcbtb1 (ENSSPAG00000009819) #28	FGF14 (ENSSPAG00000009847) #29	tubgcp3 (ENSSPAG00000009874) #30	ATP11A (ENSSPAG00000009986) #31	SOX1 (ENSSPAG00000010125) #32	arhgef7b (ENSSPAG00000010140) #33	ENSSPAG00000010212 #34	unc50 (ENSSPAG00000010252)	ndufs1 (ENSSPAG00000010291)	ENSSPAG00000010352
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00940000165996	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Oryzias	ANCESTRAL SPECIES	26	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT01030000235083	ENSGT00940000165996	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT00390000008033	ENSGT00390000013073	ENSGT00940000165208.a	ENSGT00390000008902.jb	ENSGT00530000063252.a.b.a.a	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00940000166518	ENSGT00940000154517.nb	ENSGT00390000013877	ENSGT01060000248589.C.g.b	ENSGT00940000155600.a.a.h
Oryzias_b	ANCESTRAL SPECIES	76	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT00390000008033	ENSGT00390000013073	ENSGT00940000165208.a	ENSGT00390000008902.jb	ENSGT00530000063252.a.b.a.a	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b
Indian medaka	MODERN SPECIES	24	ENSOMEG00000007428	nrp2a (ENSOMEG00000007409) #7	abcb6a (ENSOMEG00000007360) #8	cnppd1 (ENSOMEG00000007313) #9	ENSOMEG00000007283 #10	retreg2 (ENSOMEG00000007242) #11	mdh1b (ENSOMEG00000007226) #12	ENSOMEG00000007199 #13	ENSOMEG00000007170 #14	raph1b (ENSOMEG00000007149) #15	alg11 (ENSOMEG00000007110) #17	cpb2 (ENSOMEG00000007089) #18	zc3h13 (ENSOMEG00000007044) #19	rpl31 (ENSOMEG00000006975) #20	chst10 (ENSOMEG00000006938) #21	MAP4K4 (ENSOMEG00000006878) #22	ENSOMEG00000006666 #23	KYNU (ENSOMEG00000006650)	n6amt1 (ENSOMEG00000006621)	jam2a (ENSOMEG00000006601)	atp5pf (ENSOMEG00000006555)	ENSOMEG00000006540	ENSOMEG00000006531	APP (ENSOMEG00000006503)	cyyr1 (ENSOMEG00000006402)	ADAMTS1 (ENSOMEG00000006388)	ADAMTS5 (ENSOMEG00000006372)	ENSOMEG00000006332	ENSOMEG00000006145	ENSOMEG00000006135	ENSOMEG00000006121
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000008098	ENSOJAG00000008044	ENSOJAG00000008014	nrp2a (ENSOJAG00000005308) #7	cnppd1 (ENSOJAG00000004998) #9	ENSOJAG00000004832 #10	retreg2 (ENSOJAG00000004813) #11	mdh1b (ENSOJAG00000004804) #12	ENSOJAG00000004773 #13	ENSOJAG00000004700 #14	cpb2 (ENSOJAG00000004393) #18	ENSOJAG00000004385	rpl31 (ENSOJAG00000004333) #20	alg11 (ENSOJAG00000004306) #17	chst10 (ENSOJAG00000004285) #21	ENSOJAG00000003415 #22	ENSOJAG00000003322 #23	KYNU (ENSOJAG00000003284)	n6amt1 (ENSOJAG00000003275)	jam2a (ENSOJAG00000003256)	atp5pf (ENSOJAG00000003243)	APP (ENSOJAG00000002973)	cyyr1 (ENSOJAG00000002897)	ADAMTS1 (ENSOJAG00000002887)	ADAMTS5 (ENSOJAG00000002877)	ENSOJAG00000002806	ENSOJAG00000002786	ENSOJAG00000002781	ENSOJAG00000002757	ENSOJAG00000002750	ENSOJAG00000002655
Oryzias_a	ANCESTRAL SPECIES	28	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT01030000235083	ENSGT00940000165996	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT00390000008033	ENSGT00390000013073	ENSGT00940000165208.a	ENSGT00390000008902.jb	ENSGT00530000063252.a.b.a.a	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00940000166518	ENSGT00940000154517.nb	ENSGT00390000013877	ENSGT01060000248589.C.g.b	ENSGT00940000155600.a.a.h
Chinese medaka	MODERN SPECIES	23	mbnl2 (ENSOSIG00000013683)	ENSOSIG00000013793	nrp2a (ENSOSIG00000013827) #7	abcb6a (ENSOSIG00000000003) #8	cnppd1 (ENSOSIG00000000013) #9	retreg2 (ENSOSIG00000000032) #11	ENSOSIG00000000045 #13	ENSOSIG00000000052 #14	raph1b (ENSOSIG00000000169) #15	alg11 (ENSOSIG00000000590) #17	cpb2 (ENSOSIG00000000591) #18	ENSOSIG00000000592	ENSOSIG00000000594	rpl31 (ENSOSIG00000000598) #20	chst10 (ENSOSIG00000000602) #21	ENSOSIG00000000647 #22	ENSOSIG00000010322 #23	KYNU (ENSOSIG00000010327)	n6amt1 (ENSOSIG00000010348)	jam2a (ENSOSIG00000010350)	atp5pf (ENSOSIG00000010352)	APP (ENSOSIG00000010421)	cyyr1 (ENSOSIG00000017882)	ADAMTS1 (ENSOSIG00000017885)	ADAMTS5 (ENSOSIG00000017888)	ENSOSIG00000017893	FUNDC1 (ENSOSIG00000017905)	kdm6al (ENSOSIG00000018130)	cenpl (ENSOSIG00000020818)	caskb (ENSOSIG00000020825)	il1rapl1b (ENSOSIG00000020922)
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000025601	nrp2a (ENSORLG00000005395) #7	abcb6a (ENSORLG00000005333) #8	cnppd1 (ENSORLG00000005312) #9	ENSORLG00000005307 #10	retreg2 (ENSORLG00000005285) #11	mdh1b (ENSORLG00000005272) #12	ENSORLG00000005262 #13	ENSORLG00000005254 #14	raph1b (ENSORLG00000005250) #15	alg11 (ENSORLG00000005232) #17	cpb2 (ENSORLG00000005225) #18	zc3h13 (ENSORLG00000005201) #19	rpl31 (ENSORLG00000005178) #20	chst10 (ENSORLG00000005171) #21	MAP4K4 (ENSORLG00000005156) #22	ENSORLG00000029243 #23	KYNU (ENSORLG00000005074)	n6amt1 (ENSORLG00000005038)	jam2a (ENSORLG00000029786)	atp5pf (ENSORLG00000028251)	APP (ENSORLG00000005026)	cyyr1 (ENSORLG00000029132)	adamts1 (ENSORLG00000004990)	ADAMTS5 (ENSORLG00000004966)	ENSORLG00000023243	ENSORLG00000004948	kdm6al (ENSORLG00000004864)	FUNDC1 (ENSORLG00000030458)	cenpl (ENSORLG00000004817)	ENSORLG00000004812
Cyprinodontiformes	ANCESTRAL SPECIES	25	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Aplocheiloidei	ANCESTRAL SPECIES	37	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00950000183030 #20	ENSGT00730000111163 #19	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Mangrove rivulus	MODERN SPECIES	132	ENSKMAG00000012633	ENSKMAG00000012577	GPR180 (ENSKMAG00000012532)	SMIM11 (ENSKMAG00000012511)	ENSKMAG00000012423	SEMA5B (ENSKMAG00000012302)	kpnb3 (ENSKMAG00000012235)	atg13 (ENSKMAG00000012194)	HARBI1 (ENSKMAG00000012173)	creb3l1 (ENSKMAG00000012148)	ndufs1 (ENSKMAG00000012091)	unc50 (ENSKMAG00000012064)	rpl31 (ENSKMAG00000011989) #20	ENSKMAG00000011945	chst10 (ENSKMAG00000011926) #21	MAP4K4 (ENSKMAG00000011765) #22	ENSKMAG00000011694 #23	ENSKMAG00000011652 #24	ENSKMAG00000011510	cab39l (ENSKMAG00000011414) #26	cdadc1 (ENSKMAG00000011381) #27	rcbtb1 (ENSKMAG00000011318) #28	FGF14 (ENSKMAG00000011283) #29	tubgcp3 (ENSKMAG00000011185) #30	ENSKMAG00000011159	ATP11A (ENSKMAG00000011106) #31	SOX1 (ENSKMAG00000011088) #32	arhgef7b (ENSKMAG00000010994) #33	ENSKMAG00000010829 #34	ENSKMAG00000010754	zc3h13 (ENSKMAG00000010701) #19
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015022718	NRP2 (ENSNFUG00015022587) #7	ENSNFUG00015022569	abcb6a (ENSNFUG00015021916) #8	cnppd1 (ENSNFUG00015021868) #9	ENSNFUG00015021844 #10	FAM134A (ENSNFUG00015021837) #11	mdh1b (ENSNFUG00015021836) #12	FASTKD2 (ENSNFUG00015021833) #13	ENSNFUG00015021828 #14	raph1b (ENSNFUG00015021263) #15	ALG11 (ENSNFUG00015021241) #17	cpb2 (ENSNFUG00015021229) #18	ZC3H13 (ENSNFUG00015021222) #19	chst10 (ENSNFUG00015021219) #21	MAP4K4 (ENSNFUG00015020909) #22	ZC3H12C (ENSNFUG00015020892) #23	ENSNFUG00015020544 #24	ENSNFUG00015020539	MCF2L (ENSNFUG00015020529) #25	cab39l (ENSNFUG00015020524) #26	CDADC1 (ENSNFUG00015020521) #27	rcbtb1 (ENSNFUG00015020504) #28	ENSNFUG00015020497	Nfu_g_1_008660 (ENSNFUG00015020483) #29	tubgcp3 (ENSNFUG00015020355) #30	ATP11A (ENSNFUG00015017359) #31	Nfu_g_1_008684 (ENSNFUG00015017237) #32	LINGO1A (ENSNFUG00015017235)	ENSNFUG00015017227	ENSNFUG00015017224
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b.e #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Poecilia	ANCESTRAL SPECIES	30	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b.e #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
NAME_6	ANCESTRAL SPECIES	58	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b.e #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Amazon molly	MODERN SPECIES	424	ENSPFOG00000003029	nrp2a (ENSPFOG00000003190) #7	abcb6a (ENSPFOG00000003536) #8	cnppd1 (ENSPFOG00000003799) #9	ENSPFOG00000003866 #10	retreg2 (ENSPFOG00000003980) #11	mdh1b (ENSPFOG00000004105) #12	ENSPFOG00000004234 #13	ENSPFOG00000004383 #14	raph1b (ENSPFOG00000004388) #15	alg11 (ENSPFOG00000004511) #17	cpb2 (ENSPFOG00000004589) #18	zc3h13 (ENSPFOG00000005039) #19	rpl31 (ENSPFOG00000005045) #20	chst10 (ENSPFOG00000005122) #21	MAP4K4 (ENSPFOG00000005245) #22	ENSPFOG00000005817 #23	RDX (ENSPFOG00000005891) #24	MCF2L (ENSPFOG00000006017) #25	cab39l (ENSPFOG00000006848) #26	cdadc1 (ENSPFOG00000006959) #27	rcbtb1 (ENSPFOG00000007065) #28	ENSPFOG00000007177 #29	tubgcp3 (ENSPFOG00000007253) #30	ATP11A (ENSPFOG00000007727) #31	SOX1 (ENSPFOG00000008756) #32	arhgef7b (ENSPFOG00000008784) #33	ENSPFOG00000009145 #34	ENSPFOG00000009665	unc50 (ENSPFOG00000009782)	ndufs1 (ENSPFOG00000009828)
Sailfin molly	MODERN SPECIES	431		nrp2a (ENSPLAG00000014628) #7	abcb6a (ENSPLAG00000014606) #8	ENSPLAG00000014551 #10	cnppd1 (ENSPLAG00000014321) #9	retreg2 (ENSPLAG00000014309) #11	mdh1b (ENSPLAG00000014290) #12	ENSPLAG00000014235 #13	ENSPLAG00000014230 #14	raph1b (ENSPLAG00000014205) #15	alg11 (ENSPLAG00000014143) #17	cpb2 (ENSPLAG00000014129) #18	zc3h13 (ENSPLAG00000014095) #19	chst10 (ENSPLAG00000014083) #21	rpl31 (ENSPLAG00000000326) #20	MAP4K4 (ENSPLAG00000013930) #22	ENSPLAG00000009867 #23	RDX (ENSPLAG00000009857) #24	MCF2L (ENSPLAG00000009785) #25	cab39l (ENSPLAG00000009362) #26	cdadc1 (ENSPLAG00000009337) #27	rcbtb1 (ENSPLAG00000009299) #28
Guppy	MODERN SPECIES	450	ENSPREG00000009986	nrp2a (ENSPREG00000010035) #7	abcb6a (ENSPREG00000010083) #8	cnppd1 (ENSPREG00000010133) #9	ENSPREG00000010158 #10	retreg2 (ENSPREG00000010208) #11	mdh1b (ENSPREG00000010234) #12	ENSPREG00000010256 #13	ENSPREG00000010293 #14	raph1b (ENSPREG00000010336) #15	alg11 (ENSPREG00000010439) #17	cpb2 (ENSPREG00000010459) #18	zc3h13 (ENSPREG00000010526) #19	rpl31 (ENSPREG00000010564) #20	chst10 (ENSPREG00000010751) #21	MAP4K4 (ENSPREG00000010791) #22	ENSPREG00000010838 #23	RDX (ENSPREG00000010856) #24	MCF2L (ENSPREG00000010906) #25	cab39l (ENSPREG00000011055) #26	cdadc1 (ENSPREG00000011072) #27	rcbtb1 (ENSPREG00000011094) #28	ENSPREG00000011113	FGF14 (ENSPREG00000011119) #29	tubgcp3 (ENSPREG00000011155) #30	ATP11A (ENSPREG00000011298) #31	SOX1 (ENSPREG00000011495) #32	arhgef7b (ENSPREG00000011503) #33	ENSPREG00000011543 #34	unc50 (ENSPREG00000011559)	ENSPREG00000011576
Platyfish	MODERN SPECIES	16	ENSXMAG00000012604	nrp2a (ENSXMAG00000012521) #7	abcb6a (ENSXMAG00000003010) #8	cnppd1 (ENSXMAG00000003024) #9	ENSXMAG00000003025 #10	retreg2 (ENSXMAG00000025935) #11	mdh1b (ENSXMAG00000012494) #12	ENSXMAG00000012482 #13	ENSXMAG00000024149 #14	raph1b (ENSXMAG00000012467) #15	alg11 (ENSXMAG00000012465) #17	cpb2 (ENSXMAG00000012438) #18	zc3h13 (ENSXMAG00000012423) #19	rpl31 (ENSXMAG00000012419) #20	chst10 (ENSXMAG00000028772) #21	MAP4K4 (ENSXMAG00000012364) #22	ENSXMAG00000027171 #23	RDX (ENSXMAG00000012314) #24	MCF2L (ENSXMAG00000012216) #25	cab39l (ENSXMAG00000017334) #26	cdadc1 (ENSXMAG00000012166) #27	rcbtb1 (ENSXMAG00000013757) #28	ENSXMAG00000026344	ENSXMAG00000021861	ENSXMAG00000021122	ENSXMAG00000012158 #29	tubgcp3 (ENSXMAG00000026366) #30	ATP11A (ENSXMAG00000012027) #31	SOX1 (ENSXMAG00000019447) #32	arhgef7b (ENSXMAG00000004492) #33	ENSXMAG00000004406 #34
NAME_4	ANCESTRAL SPECIES	76	ENSGT00950000183214.a.b.a.b.f.b.b	ENSGT00940000155270.i.b #7	ENSGT00940000156160.b.a #8	ENSGT00390000000862 #9	ENSGT00950000183019.f.b.b.d #10	ENSGT00940000164110 #11	ENSGT00530000063410.b #12	ENSGT01030000234607.A.b #13	ENSGT00990000203779 #14	ENSGT00940000156552.c.b #15	ENSGT00550000075118.k #17	ENSGT00940000159160 #18	ENSGT00730000111163 #19	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.o.a #24	ENSGT00940000157874.q.a #25	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000153676.b #27	ENSGT00940000155814.m #28	ENSGT00940000156984.a.a #29	ENSGT00940000157872 #30	ENSGT00940000157849.n.c #31	ENSGT00940000162479.a #32	ENSGT00940000155360.B.k #33	ENSGT00940000157269.a.b #34	ENSGT00940000164275.f.d	ENSGT00390000018553	ENSGT00940000153514.b.m.b
Sheepshead minnow	MODERN SPECIES	2177																ENSCVAG00000013636 #22
Mummichog	MODERN SPECIES	980	nrp2a (ENSFHEG00000020462) #7	abcb6a (ENSFHEG00000020529) #8	cnppd1 (ENSFHEG00000020537) #9	ENSFHEG00000020542 #10	retreg2 (ENSFHEG00000000729) #11	mdh1b (ENSFHEG00000020591) #12	ENSFHEG00000020606 #13	ENSFHEG00000020630 #14	raph1b (ENSFHEG00000020732) #15	alg11 (ENSFHEG00000020747) #17	cpb2 (ENSFHEG00000020769) #18	ENSFHEG00000020784	ENSFHEG00000020795	rpl31 (ENSFHEG00000020810) #20	chst10 (ENSFHEG00000020855) #21	MAP4K4 (ENSFHEG00000021093) #22	ENSFHEG00000021225 #23	RDX (ENSFHEG00000021311) #24	ENSFHEG00000021320	ENSFHEG00000021973	cab39l (ENSFHEG00000022080) #26	cdadc1 (ENSFHEG00000022087) #27	rcbtb1 (ENSFHEG00000000545) #28	FGF14 (ENSFHEG00000022154) #29	tubgcp3 (ENSFHEG00000022234) #30	ATP11A (ENSFHEG00000022327) #31	SOX1 (ENSFHEG00000022335) #32	arhgef7b (ENSFHEG00000022472) #33	ENSFHEG00000022659 #34	ENSFHEG00000022674	unc50 (ENSFHEG00000022689)
Tiger tail seahorse	MODERN SPECIES	275	abcb6a (ENSHCOG00000010225) #8	cnppd1 (ENSHCOG00000010135) #9	ENSHCOG00000010096 #10	retreg2 (ENSHCOG00000009888) #11	mdh1b (ENSHCOG00000009881) #12	ENSHCOG00000009863 #13	ENSHCOG00000009853	ENSHCOG00000009834	raph1b (ENSHCOG00000009809) #15	alg11 (ENSHCOG00000009773) #17	cpb2 (ENSHCOG00000000303) #18	ENSHCOG00000009742	rpl31 (ENSHCOG00000009739) #20	chst10 (ENSHCOG00000009726) #21	chst10 (ENSHCOG00000009716) #21	MAP4K4 (ENSHCOG00000009697) #22	ENSHCOG00000009568 #34	ARHGEF7 (ENSHCOG00000009454) #33	ENSHCOG00000009403	MCF2L (ENSHCOG00000009356) #25	cab39l (ENSHCOG00000009280) #26	cdadc1 (ENSHCOG00000009258) #27	rcbtb1 (ENSHCOG00000009243) #28	ENSHCOG00000009214	ENSHCOG00000009194 #29	tubgcp3 (ENSHCOG00000009182) #30	ATP11A (ENSHCOG00000009108) #31	SOX1 (ENSHCOG00000008937) #32	ENSHCOG00000008925 #24	ENSHCOG00000008878 #23	ENSHCOG00000008753
Pinecone sodierfish	MODERN SPECIES	11	abcb6a (ENSMMDG00005021717) #8	cnppd1 (ENSMMDG00005021702) #9	ENSMMDG00005021587 #10	retreg2 (ENSMMDG00005021581) #11	mdh1b (ENSMMDG00005021579) #12	ENSMMDG00005021577 #13	ENSMMDG00005021573 #14	raph1b (ENSMMDG00005021460) #15	spp2 (ENSMMDG00005021455) #16	cpb2 (ENSMMDG00005021453) #18	alg11 (ENSMMDG00005021449) #17	cpb2 (ENSMMDG00005021445) #18	zc3h13 (ENSMMDG00005021439) #19	RPL31 (ENSMMDG00005021436) #20	chst10 (ENSMMDG00005021433) #21	MAP4K4 (ENSMMDG00005021003) #22	ENSMMDG00005020982 #23	ENSMMDG00005019773 #24	ENSMMDG00005017978	ENSMMDG00005017933	ENSMMDG00005017931	VANGL1 (ENSMMDG00005017927)	ENSMMDG00005017920	poglut1 (ENSMMDG00005017914)	timmdc1 (ENSMMDG00005017913)	abcc4 (ENSMMDG00005017896)	abcc4 (ENSMMDG00005008910)	cldn10a (ENSMMDG00005008793)	ENSMMDG00005008790	ENSMMDG00005008788	ENSMMDG00005008785
Cod	MODERN SPECIES	17	ENSGMOG00000000567	ENSGMOG00000005580	abcb6a (ENSGMOG00000004283) #8	cnppd1 (ENSGMOG00000004320) #9	ENSGMOG00000004338 #10	ENSGMOG00000034071	retreg2 (ENSGMOG00000004356) #11	mdh1b (ENSGMOG00000031708) #12	ENSGMOG00000026580 #21	ENSGMOG00000034282 #20	ENSGMOG00000000724	cpb2 (ENSGMOG00000000707) #18	alg11 (ENSGMOG00000000693) #17	spp2 (ENSGMOG00000000657) #16	raph1b (ENSGMOG00000024998) #15	ENSGMOG00000001433 #22	ENSGMOG00000031689 #23	ENSGMOG00000036262 #24	ENSGMOG00000015567	ENSGMOG00000024541	ENSGMOG00000034277	ENSGMOG00000035279	ENSGMOG00000026762	ENSGMOG00000030143	ENSGMOG00000034284	ENSGMOG00000024387	ENSGMOG00000029948	ENSGMOG00000025694	ENSGMOG00000023691	ENSGMOG00000030149	ENSGMOG00000031279
Protacanthopterygii	ANCESTRAL SPECIES	27				ENSGT00950000183052.b.c.b.a.e.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00950000183009.db.a	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00950000182895.a.b.v.j.a	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00440000033329.b.a.a.c	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.q.a #24	ENSGT00940000163999.a.c.a.b	ENSGT00940000161095	ENSGT00940000163999.a.c.b.b	ENSGT00390000012496.a.c	ENSGT00390000019377.b.e	ENSGT00940000172275	ENSGT00390000009178	ENSGT00980000198666	ENSGT00940000158283	ENSGT00390000013817	ENSGT00940000156862	ENSGT00940000153931.b.b	ENSGT00940000155232.t.b.a
Salmoninae	ANCESTRAL SPECIES	308														ENSGT00390000014839.b.e	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a #23	ENSGT01090000260082.d.a.b.q.a.a #24	ENSGT00940000163999.a.c.a.b.a.b	ENSGT00940000163999.a.c.a.b.a.a.a	ENSGT00940000159316.yb.b.b	ENSGT01090000260082.d.a.b.q.a.b #24	ENSGT00390000009178	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b	ENSGT00390000019377.b.e.c	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	172													ENSHHUG00000030916	atg9a (ENSHHUG00000030907)	ENSHHUG00000030883	MAP4K4 (ENSHHUG00000029955) #22	ENSHHUG00000029936	ENSHHUG00000029809 #24	tlr22 (ENSHHUG00000029801)	tlr22 (ENSHHUG00000029734)	tlr22 (ENSHHUG00000029731)	tlr22 (ENSHHUG00000029722)	ENSHHUG00000029490	ENSHHUG00000029488	ENSHHUG00000029487	ENSHHUG00000029469	ENSHHUG00000029378	poglut1 (ENSHHUG00000029368)	timmdc1 (ENSHHUG00000029362)	abcc4 (ENSHHUG00000029338)	abcc4 (ENSHHUG00000028932)
Huchen	MODERN SPECIES	186													ENSHHUG00000027254	atg9a (ENSHHUG00000027230)	ENSHHUG00000027223	ENSHHUG00000026493 #22	ENSHHUG00000026476	ENSHHUG00000026247 #24	ENSHHUG00000026235	ENSHHUG00000026233	VANGL1 (ENSHHUG00000026222)	ENSHHUG00000026172	poglut1 (ENSHHUG00000026162)	timmdc1 (ENSHHUG00000026156)	abcc4 (ENSHHUG00000025036)	psen1 (ENSHHUG00000025010)	abcc4 (ENSHHUG00000024486)	ENSHHUG00000024468	ENSHHUG00000024461	ENSHHUG00000024454	dzip1 (ENSHHUG00000024441)
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.b.a	ENSGT00950000183009.db.a.a.a	ENSGT00940000155489.a.d	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b.f.b	ENSGT00940000176997	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b #22	ENSGT00940000155107.b.a.f #23	ENSGT01090000260082.d.a.b.q.a.b #24	ENSGT00390000009178.g	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b	ENSGT00390000019377.b.e.c	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j	ENSGT00940000156862.x
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	41	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.a.b	ENSGT00940000155489.a.c.b	ENSGT00940000157267.b	ENSGT01060000250127	ENSGT00540000073890.q.a	ENSGT00940000164904.a.g.b.a	ENSGT00950000182895.a.a.a.b	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00390000004977.d.b.f	ENSGT00940000164909.e.b.k	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.c #22	ENSGT00940000155107.b.a.f #23	ENSGT01090000260082.d.a.b.q.a.b #24	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164480.a.a.g.a.b	ENSGT00390000012496.a.c.b	ENSGT00390000019377.b.e.d.b	ENSGT00940000172275	ENSGT00390000013817.c	ENSGT00940000153931.b.b.f.a.a	ENSGT00940000153931.b.b.e.b	ENSGT00940000155232.t.b.a.d	ENSGT00940000166422.b	ENSGT00940000155232.t.a.b.b.i	ENSGT00940000156862.w
Atlantic salmon	MODERN SPECIES	8	uggt1 (ENSSSAG00000072953)	ENSSSAG00000072938	ENSSSAG00000072947	ENSSSAG00000119394	ENSSSAG00000121488	ENSSSAG00000101873	ENSSSAG00000072836	ENSSSAG00000072819	ENSSSAG00000072814	ENSSSAG00000072729	ENSSSAG00000072718	ENSSSAG00000072622	ENSSSAG00000072552	ENSSSAG00000072544	ENSSSAG00000078373	ENSSSAG00000008597 #22	ENSSSAG00000007990 #23	ENSSSAG00000006617 #24	ENSSSAG00000006327	ENSSSAG00000006277	ENSSSAG00000088817	ENSSSAG00000066489	ENSSSAG00000006094	ENSSSAG00000006024	ENSSSAG00000005996	ENSSSAG00000091740	ENSSSAG00000081627	abcc4 (ENSSSAG00000081593)	cldn10a (ENSSSAG00000115005)	ENSSSAG00000081545	ENSSSAG00000081544
River trout	MODERN SPECIES	32	uggt1 (ENSSTUG00000042640)	ENSSTUG00000043329	ENSSTUG00000043340	ENSSTUG00000043355	ENSSTUG00000043365	ENSSTUG00000043388	ENSSTUG00000043590	TRA2B (ENSSTUG00000043611)	ENSSTUG00000043721	ENSSTUG00000043758	ENSSTUG00000044153	ENSSTUG00000044174	ENSSTUG00000044215	atg9a (ENSSTUG00000045300)	ENSSTUG00000045341	ENSSTUG00000045384 #22	ENSSTUG00000046182 #23	ENSSTUG00000046228 #24	ENSSTUG00000046743	ENSSTUG00000047113	ENSSTUG00000047116	ENSSTUG00000047123	ENSSTUG00000047139	ENSSTUG00000047226	ENSSTUG00000047234	abcc4 (ENSSTUG00000047308)	ENSSTUG00000048420	abcc4 (ENSSTUG00000048570)	cldn10a (ENSSTUG00000049365)	ENSSTUG00000049380	ENSSTUG00000049381
Salmo	ANCESTRAL SPECIES	48	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.b.a	ENSGT00950000183009.db.a.a.a	ENSGT00940000155489.a.d	ENSGT00730000110871.a.a.a.b	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b.e	ENSGT00940000164909.e.b.l	ENSGT00390000014839.b.f.b.a	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.d #22	ENSGT01090000260082.d.a.b.q.a.a #24	ENSGT00940000163999.a.c.a.b.a.b	ENSGT00940000163999.a.c.a.b.a.a.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164246.C.d.b.a	ENSGT00390000012496.a.c.a.a	ENSGT00390000019377.b.e.c	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.a.b	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.c	ENSGT00940000166422.a
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000092203	ENSSSAG00000078811	ENSSSAG00000078778	ENSSSAG00000078759	ENSSSAG00000078718	ENSSSAG00000083359	ENSSSAG00000072765	ENSSSAG00000078698	ENSSSAG00000078620	ENSSSAG00000078597	ENSSSAG00000078591	ENSSSAG00000111098	ENSSSAG00000078456	ENSSSAG00000078382	ENSSSAG00000114816	ENSSSAG00000067494 #22	ENSSSAG00000066692 #24	ENSSSAG00000066649	ENSSSAG00000088381	ENSSSAG00000066641	ENSSSAG00000094502	ENSSSAG00000017255	ENSSSAG00000066645	ENSSSAG00000066499	ENSSSAG00000066492	ENSSSAG00000114461	ENSSSAG00000006259	casq1 (ENSSSAG00000066333)	poglut1 (ENSSSAG00000066149)	cc001 (ENSSSAG00000066134)	ENSSSAG00000105015
River trout	MODERN SPECIES	36	ENSSTUG00000050395	ENSSTUG00000050394	ENSSTUG00000050390	ENSSTUG00000050379	ENSSTUG00000050370	TRA2B (ENSSTUG00000050364)	ENSSTUG00000050361	zgc:112416 (ENSSTUG00000050353)	ENSSTUG00000050347	TSPEAR (ENSSTUG00000050325)	ENSSTUG00000050311	ENSSTUG00000050304	ENSSTUG00000050258	atg9a (ENSSTUG00000050237)	ENSSTUG00000050230	ENSSTUG00000050054 #22	ENSSTUG00000049993 #24	tlr22 (ENSSTUG00000049985)	tlr22 (ENSSTUG00000049983)	tlr22 (ENSSTUG00000049980)	ENSSTUG00000049977	ENSSTUG00000049974	ENSSTUG00000049972	VANGL1 (ENSSTUG00000049968)	ENSSTUG00000049952	poglut1 (ENSSTUG00000049946)	timmdc1 (ENSSTUG00000049944)	abcc4 (ENSSTUG00000049552)	abcc4 (ENSSTUG00000047816)	abcc4 (ENSSTUG00000044947)	cldn10a (ENSSTUG00000044812)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.b	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155489.a.c.b	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b.i	ENSGT00390000014839.b.f.b	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.e #22	ENSGT00940000155107.b.a.f #23	ENSGT01090000260082.d.a.b.q.a.b #24	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164246.C.d.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00390000012496.a.c.b.b.b	ENSGT00390000019377.b.e.d.a.b	ENSGT00390000019377.b.e.c	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.e	ENSGT00940000166422.a
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000166763.d.b	ENSGT00950000183071.a.a.b.c.a.b.b	ENSGT00390000004600.b.a.g	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT00390000000673.a.b.d	ENSGT00940000155099.k.b.e.b.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155489.a.c.b	ENSGT00730000110871.a.a.a.b	ENSGT00940000157267.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00390000004977.d.b	ENSGT00940000176997	ENSGT00390000014839.b.f.a	ENSGT00440000033329.b.a.a.c.b	ENSGT00940000155063.a.b.e #22	ENSGT00940000155107.b.a.f #23	ENSGT01090000260082.d.a.b.q.a.b #24	ENSGT00390000009178.g	ENSGT00980000198666	ENSGT00940000164480.a.a.g.b	ENSGT00390000012496.a.c.b.b.b	ENSGT00390000019377.b.e.d.a.a	ENSGT00390000019377.b.e.c	ENSGT00940000158283	ENSGT00390000013817.d	ENSGT00940000153931.b.b.f.b	ENSGT00940000153931.b.b.e.a	ENSGT00940000155232.t.b.a.e	ENSGT00940000166422.a	ENSGT00940000155232.t.a.b.b.j
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005024139	ENSOTSG00005024141	ENSOTSG00005024142	ENSOTSG00005024143	zgc:101744 (ENSOTSG00005024144)	ENSOTSG00005024145	ENSOTSG00005024146	ENSOTSG00005024147	CARTPT (ENSOTSG00005024148)	ENSOTSG00005024150	ENSOTSG00005024151	NRDC (ENSOTSG00005024162)	ENSOTSG00005024736	atg9a (ENSOTSG00005024738)	ENSOTSG00005024787	ENSOTSG00005024793 #22	ENSOTSG00005025912 #23	ENSOTSG00005025917 #24	ENSOTSG00005028925	ENSOTSG00005029401	ENSOTSG00005029402	ENSOTSG00005029403	ENSOTSG00005029410	ENSOTSG00005029895	ENSOTSG00005029896	abcc4 (ENSOTSG00005029906)	abcc4 (ENSOTSG00005032005)	cldn10a (ENSOTSG00005040988)	ENSOTSG00005040990	ENSOTSG00005040991	dzip1 (ENSOTSG00005040992)
Coho salmon	MODERN SPECIES	25	ENSOKIG00005029574	ENSOKIG00005029596	ENSOKIG00005029607	ENSOKIG00005029627	ENSOKIG00005029647	ENSOKIG00005029825	TRA2B (ENSOKIG00005029943)	ENSOKIG00005030068	ENSOKIG00005030481	ENSOKIG00005031012	ENSOKIG00005031101	ENSOKIG00005031163	ENSOKIG00005031464	atg9a (ENSOKIG00005031492)	ENSOKIG00005031604	ENSOKIG00005031728 #22	ENSOKIG00005033595	ENSOKIG00005033685 #24	ENSOKIG00005034452	ENSOKIG00005035334	ENSOKIG00005035364	VANGL1 (ENSOKIG00005035379)	ENSOKIG00005035436	POGLUT1 (ENSOKIG00005035758)	ENSOKIG00005035989	ABCC4 (ENSOKIG00005036027)	abcc4 (ENSOKIG00005036908)	cldn10a (ENSOKIG00005039996)	ENSOKIG00005040006	dzip1 (ENSOKIG00005040046)	ENSOKIG00005040074
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000054008	uggt1 (ENSOMYG00000006857)	ENSOMYG00000007103	ENSOMYG00000056207	OLA1 (ENSOMYG00000007476)	ENSOMYG00000007652	ENSOMYG00000007737	ENSOMYG00000007792	ENSOMYG00000029816	ENSOMYG00000030120	ENSOMYG00000030155	ENSOMYG00000077588	ENSOMYG00000055704	ENSOMYG00000030271	ENSOMYG00000030561	ENSOMYG00000030736 #22	ENSOMYG00000030884 #23	ENSOMYG00000031214 #24	ENSOMYG00000033385	ENSOMYG00000035136	ENSOMYG00000057623	ENSOMYG00000035142	ENSOMYG00000035252	ENSOMYG00000035916	ENSOMYG00000068793	ENSOMYG00000036403	abcc4 (ENSOMYG00000038670)	ENSOMYG00000052190	cldn10a (ENSOMYG00000056385)	ENSOMYG00000039815	ENSOMYG00000039825
Oncorhynchus	ANCESTRAL SPECIES	70	ENSGT00950000183071.a.a.b.c.a.b.a	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.a	ENSGT00950000183009.db.a.b.a	ENSGT00940000155489.a.d	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00940000164909.e.b.j	ENSGT00390000014839.b.e	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.f #22	ENSGT00940000155107.b.a.e #23	ENSGT01090000260082.d.a.b.q.a.a #24	ENSGT00940000163999.a.c.a.b.a.b.e.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b.b.a
Rainbow trout	MODERN SPECIES	9	uggt1 (ENSOMYG00000030624)	ENSOMYG00000031247	ENSOMYG00000031259	ENSOMYG00000031275	ENSOMYG00000031318	ENSOMYG00000031443	ENSOMYG00000031530	ENSOMYG00000031683	ENSOMYG00000031785	ENSOMYG00000031847	ENSOMYG00000031943	ENSOMYG00000031982	ENSOMYG00000032031	ENSOMYG00000032074	ENSOMYG00000032093	ENSOMYG00000032300 #22	ENSOMYG00000015966 #24	ENSOMYG00000016156	ENSOMYG00000049322	ENSOMYG00000075427	ENSOMYG00000054440	ENSOMYG00000057949	ENSOMYG00000016163	ENSOMYG00000016165	ENSOMYG00000016168	ENSOMYG00000016209	ENSOMYG00000016525	ENSOMYG00000016590	ENSOMYG00000016730	abcc4 (ENSOMYG00000020308)	cldn10a (ENSOMYG00000020750)
Oncorhynchus_a	ANCESTRAL SPECIES	86	ENSGT00950000183071.a.a.b.c.a.b.a	ENSGT00390000004600.b.a.h	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000163513.d	ENSGT00390000000673.a.b.c	ENSGT00940000155099.k.b.e.a	ENSGT00950000183009.db.a.b.a	ENSGT00940000155489.a.c.a	ENSGT00390000011514	ENSGT00940000157267.a	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.j.a.a	ENSGT00940000164909.e.b.i	ENSGT00390000014839.b.f.b	ENSGT00440000033329.b.a.a.c.a	ENSGT00940000155063.a.b.f #22	ENSGT00940000155107.b.a.e #23	ENSGT01090000260082.d.a.b.q.a.a #24	ENSGT00940000163999.a.c.a.b.a.b.f	ENSGT00940000163999.a.c.a.b.a.b.e.a	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00390000009178.h	ENSGT00940000164480.a.a.g.a.a.b	ENSGT00390000012496.a.c.b.b.a	ENSGT00390000019377.b.e.d.a.b
Chinook salmon	MODERN SPECIES	5	uggt1 (ENSOTSG00005022205)	ENSOTSG00005022580	ENSOTSG00005022583	ENSOTSG00005022588	ENSOTSG00005022591	ENSOTSG00005022594	ENSOTSG00005022645	TRA2B (ENSOTSG00005022648)	ENSOTSG00005022649	ENSOTSG00005022650	ENSOTSG00005022651	rassf6 (ENSOTSG00005022652)	ENSOTSG00005022654	ENSOTSG00005022655	ENSOTSG00005022691	ENSOTSG00005022693 #22	ENSOTSG00005023916 #23	ENSOTSG00005023952 #24	tlr22 (ENSOTSG00005026606)	ENSOTSG00005026607	ENSOTSG00005026608	ENSOTSG00005026609	VANGL1 (ENSOTSG00005026610)	ENSOTSG00005026612	poglut1 (ENSOTSG00005026614)	timmdc1 (ENSOTSG00005026791)	abcc4 (ENSOTSG00005026793)	abcc4 (ENSOTSG00005027263)	ENSOTSG00005035925	ENSOTSG00005035928	dzip1 (ENSOTSG00005035933)
Coho salmon	MODERN SPECIES	7	ENSOKIG00005017619	ENSOKIG00005017601	ENSOKIG00005017591	ENSOKIG00005017581	ENSOKIG00005017465	ENSOKIG00005017445	TRA2B (ENSOKIG00005017348)	ENSOKIG00005017302	zgc:112416 (ENSOKIG00005017214)	ENSOKIG00005017173	TSPEAR (ENSOKIG00005017150)	SUMO3 (ENSOKIG00005017139)	ENSOKIG00005017083	ATG9A (ENSOKIG00005016974)	ENSOKIG00005016937	ENSOKIG00005016200 #22	ENSOKIG00005016124	ENSOKIG00005016118	ENSOKIG00005013915 #24	ENSOKIG00005013499	ENSOKIG00005013465	ENSOKIG00005013460	ENSOKIG00005013454	ENSOKIG00005013447	tlr22 (ENSOKIG00005013441)	ENSOKIG00005013258	ENSOKIG00005013239	ENSOKIG00005013223	ENSOKIG00005012776	poglut1 (ENSOKIG00005012497)	timmdc1 (ENSOKIG00005012469)
Northern pike	MODERN SPECIES	21	SYAP1 (ENSELUG00000010637)	phospho2 (ENSELUG00000010608)	ENSELUG00000010566	ola1 (ENSELUG00000010548)	ENSELUG00000010520	TRA2B (ENSELUG00000010477)	ENSELUG00000030506	ENSELUG00000010433	ENSELUG00000009974	ENSELUG00000009935	TSPEAR (ENSELUG00000009812)	ENSELUG00000001518	ENSELUG00000009709	atg9a (ENSELUG00000009602)	ENSELUG00000009573	MAP4K4 (ENSELUG00000009520) #22	ENSELUG00000009319 #23	ENSELUG00000009290 #24	tlr22 (ENSELUG00000009256)	ENSELUG00000009243	ENSELUG00000009208	VANGL1 (ENSELUG00000009195)	ENSELUG00000009144	poglut1 (ENSELUG00000009087)	ENSELUG00000009037	ENSELUG00000009064	SSBP4 (ENSELUG00000008998)	keap1a (ENSELUG00000008917)	crlf1a (ENSELUG00000008880)	odf3l2a (ENSELUG00000008837)	ebi3 (ENSELUG00000008819)
Euteleosteomorpha	ANCESTRAL SPECIES	162	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000012063	ENSGT00950000183115.b.a.m.a	ENSGT00940000160136.p	ENSGT00960000191502	ENSGT00550000075118.l ##17	ENSGT00950000183097.a.a.b	ENSGT00390000006356	ENSGT00950000183030 #20	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01000000215431	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b #24	ENSGT00940000163999.a
Acanthomorphata	ANCESTRAL SPECIES	197	ENSGT00390000011864	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000012063	ENSGT00950000183115.b.a.m.a	ENSGT00940000160136.p	ENSGT00960000191502	ENSGT00550000075118.l ##17	ENSGT00950000183097.a.a.b	ENSGT00390000006356	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	53	ENSGT00390000011864	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000012063	ENSGT00950000183115.b.a.m.a	ENSGT00940000160136.p	ENSGT00960000191502	ENSGT00550000075118.l ##17	ENSGT00950000183097.a.a.b	ENSGT00390000006356	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Percomorphaceae	ANCESTRAL SPECIES	38	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.b.b.b	ENSGT00940000154533.a.a.a	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Tiger tail seahorse	MODERN SPECIES	49	pdia5 (ENSHCOG00000016469)	sec22a (ENSHCOG00000016488)	adcy5 (ENSHCOG00000016524)	hacd2 (ENSHCOG00000016555)	stam2 (ENSHCOG00000016562)	CACNB4 (ENSHCOG00000016598)	arl5a (ENSHCOG00000016616)	ENSHCOG00000016733	ENSHCOG00000016753	ENSHCOG00000016772	ENSHCOG00000016784	TBC1D8 (ENSHCOG00000017043)	PDCL3 (ENSHCOG00000017074)	ENSHCOG00000017082	LONRF2 (ENSHCOG00000017093)	ENSHCOG00000017274 ##22	ENSHCOG00000017382	ENSHCOG00000017385	ENSHCOG00000017389	ENSHCOG00000017425	RDX (ENSHCOG00000017470) ##24	ENSHCOG00000017599 ##36	ENSHCOG00000017676	ENSHCOG00000017922	ENSHCOG00000018006	ENSHCOG00000018054	ZMYM2 (ENSHCOG00000018071)	gja3 (ENSHCOG00000018088)	ENSHCOG00000018092	gjb8 (ENSHCOG00000018106)	cryl1 (ENSHCOG00000018125)
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000154533.b.b.b	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01090000262545
Pomacentridae	ANCESTRAL SPECIES	135	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000154533.b.b.b	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000158407
Pomacentridae_A	ANCESTRAL SPECIES	148	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000154533.b.b.b	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000158407
Amphiprion	ANCESTRAL SPECIES	52	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000154533.b.b.b	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT01000000214434.B.a.a	ENSGT00680000100037	ENSGT00940000155065.xb.a	ENSGT00940000154657.A.c	ENSGT00940000154657.B	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b.b	ENSGT00940000156462.B.c.b	ENSGT00940000156462.B.c.a.a	ENSGT00940000156462.A	ENSGT00950000183138.a.b.r.b
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000000506	pdia5 (ENSAPEG00000000645)	ENSAPEG00000000718	sec22a (ENSAPEG00000000731)	adcy5 (ENSAPEG00000000760)	hacd2 (ENSAPEG00000000828)	stam2 (ENSAPEG00000000880)	CACNB4 (ENSAPEG00000000953)	arl5a (ENSAPEG00000000995)	NEB (ENSAPEG00000001049)	ENSAPEG00000001640	TBC1D8 (ENSAPEG00000001672)	PDCL3 (ENSAPEG00000001738)	ENSAPEG00000001752	ENSAPEG00000001771	ENSAPEG00000001809 ##22	ENSAPEG00000002031	ENSAPEG00000002087	nifk (ENSAPEG00000002123)	ENSAPEG00000002198	zgc:172295 (ENSAPEG00000002279)	ddx18 (ENSAPEG00000002348)	actr3 (ENSAPEG00000002368)	ENSAPEG00000002424	ENSAPEG00000002490	ENSAPEG00000002557	cops8 (ENSAPEG00000002579)	COL6A3 (ENSAPEG00000002655)	ENSAPEG00000002754	ENSAPEG00000002799	ENSAPEG00000002834
Bicolor damselfish	MODERN SPECIES	1625															LONRF2 (ENSSPAG00000016989)	ENSSPAG00000016925 ##22	ENSSPAG00000016901
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	40	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Haplochromini	ANCESTRAL SPECIES	43	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c	ENSGT00390000007182
Burton s mouthbrooder	MODERN SPECIES	415															LONRF2 (ENSHBUG00000002886)	ENSHBUG00000003162 ##22	ENSHBUG00000003239	ENSHBUG00000003286	ENSHBUG00000003326	ENSHBUG00000003343	ENSHBUG00000003376	ENSHBUG00000003470 ##24	ENSHBUG00000003513 ##36	ENSHBUG00000003554	ENSHBUG00000001160	ENSHBUG00000003595	ENSHBUG00000003651	ZMYM2 (ENSHBUG00000003684)	gja3 (ENSHBUG00000003697)	gjb8 (ENSHBUG00000003705)	cryl1 (ENSHBUG00000003727)
Haplochromini_A	ANCESTRAL SPECIES	45	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c	ENSGT00390000007182
Haplochromini_B	ANCESTRAL SPECIES	36	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c
Eastern happy	MODERN SPECIES	7	ENSACLG00000020184	sec22a (ENSACLG00000020148)	ENSACLG00000020139	adcy5 (ENSACLG00000020115)	hacd2 (ENSACLG00000020082)	stam2 (ENSACLG00000020034)	CACNB4 (ENSACLG00000019964)	arl5a (ENSACLG00000019945)	ENSACLG00000019939	ENSACLG00000019900	NEB (ENSACLG00000019534)	TBC1D8 (ENSACLG00000019431)	PDCL3 (ENSACLG00000019421)	ENSACLG00000019408	LONRF2 (ENSACLG00000019361)	ENSACLG00000018854 ##22	ENSACLG00000018836	ENSACLG00000018799	ENSACLG00000018582	ENSACLG00000018548	ENSACLG00000018536	ENSACLG00000018493 ##23	ENSACLG00000018405 ##24	ENSACLG00000018386 ##36	ENSACLG00000018338	ENSACLG00000018279	ENSACLG00000018234	ENSACLG00000018148	mphosph8 (ENSACLG00000018073)	ZMYM2 (ENSACLG00000017841)	gja3 (ENSACLG00000017824)
Zebra mbuna	MODERN SPECIES	1098	SEMA5B (ENSMZEG00005018764)	pdia5 (ENSMZEG00005018787)	sec22a (ENSMZEG00005018800)	adcy5 (ENSMZEG00005018813)	hacd2 (ENSMZEG00005018832)	stam2 (ENSMZEG00005018838)	CACNB4 (ENSMZEG00005018844)	arl5a (ENSMZEG00005018866)	NEB (ENSMZEG00005018907)	ENSMZEG00005018943	ENSMZEG00005018946	TBC1D8 (ENSMZEG00005018948)	PDCL3 (ENSMZEG00005018953)	ENSMZEG00005018959	LONRF2 (ENSMZEG00005018961)	ENSMZEG00005018991 ##22	ENSMZEG00005019077	ENSMZEG00005019100	ENSMZEG00005019115	ENSMZEG00005019130	ENSMZEG00005019137 ##23	ENSMZEG00005019148 ##24	ENSMZEG00005019155 ##36	ENSMZEG00005019166	ENSMZEG00005019175	ENSMZEG00005019178	ENSMZEG00005019186	ENSMZEG00005019198	ZMYM2 (ENSMZEG00005019215)	gja3 (ENSMZEG00005019238)	gjb8 (ENSMZEG00005019239)
P. nyererei	MODERN SPECIES	470	SEMA5B (ENSPNYG00000012145)	pdia5 (ENSPNYG00000012103)	sec22a (ENSPNYG00000012069)	adcy5 (ENSPNYG00000012024)	hacd2 (ENSPNYG00000011991)	stam2 (ENSPNYG00000011970)	CACNB4 (ENSPNYG00000011945)	arl5a (ENSPNYG00000011933)	ENSPNYG00000011838	ENSPNYG00000011810	ENSPNYG00000011749	TBC1D8 (ENSPNYG00000011684)	PDCL3 (ENSPNYG00000011629)	ENSPNYG00000011613	ENSPNYG00000011589	ENSPNYG00000011542 ##22	ENSPNYG00000011510
Lyretail cichlid	MODERN SPECIES	319	ENSNBRG00000013009	mnx2a (ENSNBRG00000012980)	MYO1B (ENSNBRG00000012903)	BZW1 (ENSNBRG00000012864)	LRP1B (ENSNBRG00000012652)	RALB (ENSNBRG00000012615)	nepro (ENSNBRG00000012587)	ENSNBRG00000012545	poglut2 (ENSNBRG00000012518)	stxbp5l (ENSNBRG00000012464)	gtf2e1 (ENSNBRG00000012453)	ENSNBRG00000012444	rabl3 (ENSNBRG00000012423)	ENSNBRG00000012410	ENSNBRG00000012375	MAP4K4 (ENSNBRG00000012299) ##22	ENSNBRG00000012278	ENSNBRG00000012268	ENSNBRG00000012245	ENSNBRG00000012215	ENSNBRG00000012175 ##23	ENSNBRG00000012126 ##24	ENSNBRG00000012079 ##36	ENSNBRG00000012006	ENSNBRG00000011983	ENSNBRG00000011969	ENSNBRG00000011955	TTF2 (ENSNBRG00000011914)	mphosph8 (ENSNBRG00000011858)	ZMYM2 (ENSNBRG00000011738)	gja3 (ENSNBRG00000011700)
Nile tilapia	MODERN SPECIES	7	hspbap1 (ENSONIG00000017046)	slc49a4 (ENSONIG00000017043)	SEMA5B (ENSONIG00000017040)	pdia5 (ENSONIG00000017035)	sec22a (ENSONIG00000017033)	adcy5 (ENSONIG00000017027)	hacd2 (ENSONIG00000030290)	stam2 (ENSONIG00000017025)	CACNB4 (ENSONIG00000017022)	arl5a (ENSONIG00000033932)	NEB (ENSONIG00000017020)	TBC1D8 (ENSONIG00000017018)	PDCL3 (ENSONIG00000036855)	ENSONIG00000027335	ENSONIG00000017014	MAP4K4 (ENSONIG00000017004) ##22	ENSONIG00000017002	ENSONIG00000016999	ENSONIG00000016997	ENSONIG00000016996	ENSONIG00000033092 ##23	RDX (ENSONIG00000015749) ##24	ENSONIG00000015748 ##36	ENSONIG00000015746	ENSONIG00000015745	ENSONIG00000015742	mphosph8 (ENSONIG00000015738)	ENSONIG00000036762	ZMYM2 (ENSONIG00000015731)	gja3 (ENSONIG00000032506)	gjb8 (ENSONIG00000020651)
Midas cichlid	MODERN SPECIES	1364														ENSACIG00000008172	ENSACIG00000008185	ENSACIG00000008202 ##22	ENSACIG00000008263
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Mangrove rivulus	MODERN SPECIES	133										ENSKMAG00000012771	ENSKMAG00000012805	TBC1D8 (ENSKMAG00000012865)	PDCL3 (ENSKMAG00000012949)	ENSKMAG00000012990	ENSKMAG00000013008	MAP4K4 (ENSKMAG00000013041) ##22	ENSKMAG00000013117	ENSKMAG00000013164	ENSKMAG00000013204	ENSKMAG00000013264	ENSKMAG00000013285 ##23	RDX (ENSKMAG00000013310) ##24	ENSKMAG00000013356 ##36	ENSKMAG00000013387	ENSKMAG00000013403	ENSKMAG00000013488	ENSKMAG00000013535	ENSKMAG00000013579	ZMYM2 (ENSKMAG00000013612)	gja3 (ENSKMAG00000013644)	gjb8 (ENSKMAG00000013654)
Turquoise killifish	MODERN SPECIES	1623	DIRC2 (ENSNFUG00015008529)	ENSNFUG00015008523	SEMA5B (ENSNFUG00015007995)	PDIA5 (ENSNFUG00015007813)	SEC22A (ENSNFUG00015007779)	adcy5 (ENSNFUG00015006978)	PTPLB (ENSNFUG00015006878)	stam2 (ENSNFUG00015006753)	ENSNFUG00015006204	ARL5A (ENSNFUG00015006092)	TBC1D8 (ENSNFUG00015005072)	NMS (ENSNFUG00015005059)	PDCL3 (ENSNFUG00015005043)	LONRF2 (ENSNFUG00015005022)	ENSNFUG00015024645	ENSNFUG00015010723 ##22	IL18R1 (ENSNFUG00015009023)	CABZ01054962.1 (ENSNFUG00015008926)	ENSNFUG00015008892	ENSNFUG00015008877	ENSNFUG00015008867	ENSNFUG00015008863 ##23	ENSNFUG00015008530 ##24	ENSNFUG00015008413 ##36	ENSNFUG00015008400	ENSNFUG00015008395	CENPJ (ENSNFUG00015008388)	ENSNFUG00015008362	ENSNFUG00015008358	mphosph8 (ENSNFUG00015008349)	ZMYM2 (ENSNFUG00015008324)
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
NAME_4	ANCESTRAL SPECIES	68	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01090000262545	ENSGT01030000234513.B.b.c
Mummichog	MODERN SPECIES	2252	SEMA5B (ENSFHEG00000015846)	pdia5 (ENSFHEG00000015960)	sec22a (ENSFHEG00000015970)	adcy5 (ENSFHEG00000016114)	hacd2 (ENSFHEG00000000574)	stam2 (ENSFHEG00000016210)	CACNB4 (ENSFHEG00000016221)	arl5a (ENSFHEG00000016231)	NEB (ENSFHEG00000016597)	ENSFHEG00000016611	TBC1D8 (ENSFHEG00000016677)	PDCL3 (ENSFHEG00000016702)	ENSFHEG00000016707	ENSFHEG00000016728	LONRF2 (ENSFHEG00000016740)	MAP4K4 (ENSFHEG00000016776) ##22	ENSFHEG00000016817	ENSFHEG00000016823	ENSFHEG00000016885
Sheepshead minnow	MODERN SPECIES	1247															ENSCVAG00000014710	ENSCVAG00000014691 ##22	ENSCVAG00000014284
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.e	ENSGT01090000259985.b.b.b.a.b.f	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b
Poecilia	ANCESTRAL SPECIES	13	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00940000163342.a.b.a.a.db.a	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.e	ENSGT01090000259985.b.b.b.a.b.f	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604.b	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b
NAME_6	ANCESTRAL SPECIES	46	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a.s	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00940000163342.a.b.a.a.db.a	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.e	ENSGT01090000259985.b.b.b.a.b.f	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a.t
Amazon molly	MODERN SPECIES	271	slc15a2 (ENSPFOG00000016217)	hspbap1 (ENSPFOG00000016443)	slc49a4 (ENSPFOG00000016456)	SEMA5B (ENSPFOG00000016495)	pdia5 (ENSPFOG00000016645)	sec22a (ENSPFOG00000016784)	adcy5 (ENSPFOG00000016833)	hacd2 (ENSPFOG00000017008)	stam2 (ENSPFOG00000017050)	ENSPFOG00000017124	ENSPFOG00000017174	TBC1D8 (ENSPFOG00000017224)	PDCL3 (ENSPFOG00000017314)	ENSPFOG00000017326	LONRF2 (ENSPFOG00000017363)	ENSPFOG00000017421 ##22	ENSPFOG00000017532	ENSPFOG00000017535	ENSPFOG00000017547	ENSPFOG00000017568	ENSPFOG00000024092	ENSPFOG00000017581
Sailfin molly	MODERN SPECIES	455										ENSPLAG00000021673	TBC1D8 (ENSPLAG00000021627)	PDCL3 (ENSPLAG00000021574)	ENSPLAG00000021565	ENSPLAG00000021555	LONRF2 (ENSPLAG00000021535)	ENSPLAG00000021529 ##22	ENSPLAG00000021476
Guppy	MODERN SPECIES	450	SEMA5B (ENSPREG00000003186)	pdia5 (ENSPREG00000003118)	sec22a (ENSPREG00000003109)	adcy5 (ENSPREG00000003040)	hacd2 (ENSPREG00000002994)	stam2 (ENSPREG00000002873)	CACNB4 (ENSPREG00000002834)	arl5a (ENSPREG00000002806)	NEB (ENSPREG00000002445)	TBC1D8 (ENSPREG00000002317)	PDCL3 (ENSPREG00000002284)	ENSPREG00000002245	ENSPREG00000002217	ENSPREG00000002164	LONRF2 (ENSPREG00000002145)	ENSPREG00000002031 ##22	ENSPREG00000002016	ENSPREG00000001958	ENSPREG00000001868	ENSPREG00000001752	ENSPREG00000001663	ENSPREG00000001607 ##23	ENSPREG00000001548 ##24	ENSPREG00000001527 ##36	ENSPREG00000001414	ENSPREG00000001362	ENSPREG00000001280	ENSPREG00000001258	ENSPREG00000001220	ZMYM2 (ENSPREG00000001205)	gja3 (ENSPREG00000001183)
Platyfish	MODERN SPECIES	21	SEMA5B (ENSXMAG00000000810)	pdia5 (ENSXMAG00000000792)	sec22a (ENSXMAG00000000784)	adcy5 (ENSXMAG00000000770)	hacd2 (ENSXMAG00000012243)	stam2 (ENSXMAG00000012271)	CACNB4 (ENSXMAG00000007962)	ENSXMAG00000024250	arl5a (ENSXMAG00000007983)	NEB (ENSXMAG00000019159)	TBC1D8 (ENSXMAG00000019137)	PDCL3 (ENSXMAG00000024770)	ENSXMAG00000028733	ENSXMAG00000019116	LONRF2 (ENSXMAG00000019107)	ENSXMAG00000019084 ##22	ENSXMAG00000019078	ENSXMAG00000024246	ENSXMAG00000025926	ENSXMAG00000002345	ENSXMAG00000021454	ENSXMAG00000026599	ENSXMAG00000026589	ENSXMAG00000014715 ##23	ENSXMAG00000014727 ##24	ENSXMAG00000028200 ##36	ENSXMAG00000014747	ENSXMAG00000014758	ENSXMAG00000014772	ENSXMAG00000014800	ZMYM2 (ENSXMAG00000014819)
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.c	ENSGT01090000259985.b.b.b.a.b.d	ENSGT01090000259985.b.a.a.b	ENSGT00940000178691	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00950000182900.C	ENSGT00940000157829	ENSGT00510000047417	ENSGT00940000159616	ENSGT00940000160302	ENSGT00940000158618	ENSGT00940000155009.a	ENSGT00390000003231.b	ENSGT00530000063186.a
Indian medaka	MODERN SPECIES	18	slc49a4 (ENSOMEG00000016617)	SEMA5B (ENSOMEG00000016740)	pdia5 (ENSOMEG00000016828)	sec22a (ENSOMEG00000016874)	adcy5 (ENSOMEG00000017031)	hacd2 (ENSOMEG00000017075)	stam2 (ENSOMEG00000017132)	CACNB4 (ENSOMEG00000000427)	arl5a (ENSOMEG00000017228)	NEB (ENSOMEG00000017518)	ENSOMEG00000017591	TBC1D8 (ENSOMEG00000017709)	PDCL3 (ENSOMEG00000017760)	ENSOMEG00000017777	LONRF2 (ENSOMEG00000017796)	MAP4K4 (ENSOMEG00000018134) ##22	ENSOMEG00000018288	ENSOMEG00000018317	ENSOMEG00000018459	ENSOMEG00000018561	ENSOMEG00000018595	ENSOMEG00000018642	RDX (ENSOMEG00000018770) ##24	dcaf6 (ENSOMEG00000018956)	gpr161b (ENSOMEG00000019007)	OTC (ENSOMEG00000000500)	ENSOMEG00000019054	srpx (ENSOMEG00000019129)	SYTL5 (ENSOMEG00000019206)	DYNLT3 (ENSOMEG00000019242)	xk (ENSOMEG00000019255)
Oryzias_a	ANCESTRAL SPECIES	46	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.c	ENSGT01090000259985.b.b.b.a.b.d	ENSGT01090000259985.b.a.a.b	ENSGT00940000178691	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00950000182900.C	ENSGT00940000157829	ENSGT00510000047417	ENSGT00940000159616	ENSGT00940000160302	ENSGT00940000158618	ENSGT00940000155009.a	ENSGT00390000003231.b	ENSGT00530000063186.a
Chinese medaka	MODERN SPECIES	893	slc15a2 (ENSOSIG00000012930)	slc49a4 (ENSOSIG00000014203)	SEMA5B (ENSOSIG00000014210)	pdia5 (ENSOSIG00000014796)	sec22a (ENSOSIG00000016096)	adcy5 (ENSOSIG00000016118)	hacd2 (ENSOSIG00000017534)	stam2 (ENSOSIG00000017555)	CACNB4 (ENSOSIG00000017617)	arl5a (ENSOSIG00000018187)	NEB (ENSOSIG00000018414)	TBC1D8 (ENSOSIG00000018987)	PDCL3 (ENSOSIG00000018994)	ENSOSIG00000018996	LONRF2 (ENSOSIG00000019009)	ENSOSIG00000019043 ##22	ENSOSIG00000019292	ENSOSIG00000019299	ENSOSIG00000019304	ENSOSIG00000019305	ENSOSIG00000019306	ENSOSIG00000019314	ENSOSIG00000019371 ##24	dcaf6 (ENSOSIG00000019887)	gpr161b (ENSOSIG00000020335)	OTC (ENSOSIG00000020343)	ENSOSIG00000020454	srpx (ENSOSIG00000020476)	SYTL5 (ENSOSIG00000020479)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000162718	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b
Anabantaria	ANCESTRAL SPECIES	14	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000180504	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c	ENSGT01030000234915
Zig-zag eel	MODERN SPECIES	13	hspbap1 (ENSMAMG00000026001)	slc49a4 (ENSMAMG00000019623)	SEMA5B (ENSMAMG00000019659)	pdia5 (ENSMAMG00000019703)	sec22a (ENSMAMG00000019731)	adcy5 (ENSMAMG00000019746)	hacd2 (ENSMAMG00000019801)	stam2 (ENSMAMG00000019821)	CACNB4 (ENSMAMG00000019860)	ARL5A (ENSMAMG00000027277)	NEB (ENSMAMG00000019894)	ENSMAMG00000020181	ENSMAMG00000020192	ENSMAMG00000024626	ENSMAMG00000020227	ENSMAMG00000020244 ##22	ENSMAMG00000020327	ENSMAMG00000020340	ENSMAMG00000026143	ENSMAMG00000024378	ENSMAMG00000020363	ENSMAMG00000020372 ##23	ENSMAMG00000020376 ##24	ENSMAMG00000020394 ##36	ENSMAMG00000020403	ENSMAMG00000020420	ENSMAMG00000020428	ENSMAMG00000027297	mphosph8 (ENSMAMG00000020440)	gja3 (ENSMAMG00000025088)	gjb8 (ENSMAMG00000020471)
Siamese fighting fish	MODERN SPECIES	11	hspbap1 (ENSBSLG00000026317)	slc49a4 (ENSBSLG00000026314)	SEMA5B (ENSBSLG00000026308)	pdia5 (ENSBSLG00000026268)	sec22a (ENSBSLG00000026258)	ENSBSLG00000026257	adcy5 (ENSBSLG00000026233)	hacd2 (ENSBSLG00000026204)	stam2 (ENSBSLG00000026132)	ENSBSLG00000026022	arl5a (ENSBSLG00000025945)	TBC1D8 (ENSBSLG00000025466)	PDCL3 (ENSBSLG00000025447)	ENSBSLG00000025438	LONRF2 (ENSBSLG00000025406)	ENSBSLG00000025030 ##22	ENSBSLG00000025004	ENSBSLG00000025002	ENSBSLG00000024992	ENSBSLG00000024988	ENSBSLG00000024967	ENSBSLG00000024960 ##23	ENSBSLG00000024274 ##24	ENSBSLG00000024248	ENSBSLG00000024244	ENSBSLG00000024239	ENSBSLG00000024234	ENSBSLG00000024232	ENSBSLG00000024227	ENSBSLG00000024190 ##36	ENSBSLG00000024148
Carangaria	ANCESTRAL SPECIES	12	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a.a.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566	ENSGT01030000234513.B.b.c
Greater amberjack	MODERN SPECIES	21	slc49a4 (ENSSDUG00000011881)	SEMA5B (ENSSDUG00000011942)	pdia5 (ENSSDUG00000012035)	sec22a (ENSSDUG00000012096)	adcy5 (ENSSDUG00000012121)	hacd2 (ENSSDUG00000012187)	stam2 (ENSSDUG00000012211)	CACNB4 (ENSSDUG00000012235)	arl5a (ENSSDUG00000012261)	NEB (ENSSDUG00000012291)	ENSSDUG00000012644	TBC1D8 (ENSSDUG00000012655)	PDCL3 (ENSSDUG00000012715)	ENSSDUG00000012749	LONRF2 (ENSSDUG00000012768)	ENSSDUG00000012823 ##22	ENSSDUG00000013083	ENSSDUG00000013116	ENSSDUG00000013124	ENSSDUG00000013156	ENSSDUG00000013210	ENSSDUG00000013237 ##23	ENSSDUG00000013349 ##24	ENSSDUG00000013413 ##36	ENSSDUG00000013530	ENSSDUG00000013590	TTF2 (ENSSDUG00000013617)	ENSSDUG00000013660	ZMYM2 (ENSSDUG00000013698)	gja3 (ENSSDUG00000013756)	gjb8 (ENSSDUG00000013781)
Barramundi perch	MODERN SPECIES	588															ENSLCAG00010011218	ENSLCAG00010010709 ##22	ENSLCAG00010010581
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a.a.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c	ENSGT01030000234915
Tongue sole	MODERN SPECIES	7	ENSCSEG00000003524	DGKG (ENSCSEG00000003511)	etv5a (ENSCSEG00000003505)	itgb5 (ENSCSEG00000003492)	tnfaip6 (ENSCSEG00000003481)	hacd2 (ENSCSEG00000003470)	stam2 (ENSCSEG00000003459)	ENSCSEG00000003457	cacnb4b (ENSCSEG00000003446)	arl5a (ENSCSEG00000003442)	NEB (ENSCSEG00000003369)	TBC1D8 (ENSCSEG00000003354)	PDCL3 (ENSCSEG00000003347)	ENSCSEG00000003345	ENSCSEG00000003336	ENSCSEG00000003329 ##22	ENSCSEG00000003312	ccnyl1 (ENSCSEG00000003305)	fzd5 (ENSCSEG00000003301)	PLEKHM3 (ENSCSEG00000003299)	LANCL3 (ENSCSEG00000003293)	GRPR (ENSCSEG00000003291)	asb11 (ENSCSEG00000003287)	piga (ENSCSEG00000003284)	appb (ENSCSEG00000003260)	gabpa (ENSCSEG00000003241)	u2af1 (ENSCSEG00000003238)	CBS (ENSCSEG00000003180)	MBNL2 (ENSCSEG00000003163)	RAP2A (ENSCSEG00000003157)	FARP1 (ENSCSEG00000003070)
Turbot	MODERN SPECIES	5	slc15a2 (ENSSMAG00000005904)	hspbap1 (ENSSMAG00000005985)	slc49a4 (ENSSMAG00000006001)	pdia5 (ENSSMAG00000006223)	sec22a (ENSSMAG00000006273)	adcy5 (ENSSMAG00000006314)	hacd2 (ENSSMAG00000029560)	stam2 (ENSSMAG00000006399)	CACNB4 (ENSSMAG00000006462)	ARL5A (ENSSMAG00000031119)	NEB (ENSSMAG00000006578)	ENSSMAG00000006884	ENSSMAG00000007011	ENSSMAG00000007031	ENSSMAG00000007046	ENSSMAG00000007075 ##22	ENSSMAG00000007143	ENSSMAG00000007167	ENSSMAG00000007220	ENSSMAG00000007236	ENSSMAG00000031127 ##23	ENSSMAG00000007284 ##24	ENSSMAG00000007410 ##36	ENSSMAG00000007429	ENSSMAG00000007507	ENSSMAG00000007532	mphosph8 (ENSSMAG00000007565)	ZMYM2 (ENSSMAG00000007592)	gja3 (ENSSMAG00000028052)	gjb8 (ENSSMAG00000007632)	ENSSMAG00000018221
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01000000215431	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01030000234513.B.b.c	ENSGT01030000234915	ENSGT00390000007182
Tetraodon	MODERN SPECIES	13	hspbap1 (ENSTNIG00000015702)	slc49a4 (ENSTNIG00000015701)	SEMA5B (ENSTNIG00000015700)	pdia5 (ENSTNIG00000015699)	sec22a (ENSTNIG00000015698)	adcy5 (ENSTNIG00000015697)	hacd2 (ENSTNIG00000001029)	stam2 (ENSTNIG00000015696)	CACNB4 (ENSTNIG00000015695)	arl5a (ENSTNIG00000000814)	NEB (ENSTNIG00000015694)	ENSTNIG00000015693	TBC1D8 (ENSTNIG00000015692)	PDCL3 (ENSTNIG00000015691)	LONRF2 (ENSTNIG00000015690)	MAP4K4 (ENSTNIG00000015689) ##22	ENSTNIG00000015688	ENSTNIG00000015687	ENSTNIG00000015686	ENSTNIG00000015685	ENSTNIG00000015684	ENSTNIG00000015683 ##24	ENSTNIG00000015682 ##36	ENSTNIG00000015681	ENSTNIG00000015680	ENSTNIG00000015679	mphosph8 (ENSTNIG00000015678)	ZMYM2 (ENSTNIG00000015677)	gja3 (ENSTNIG00000015676)	gjb8 (ENSTNIG00000015675)	gjb8 (ENSTNIG00000015674)
Fugu	MODERN SPECIES		slc15a2 (ENSTRUG00000013965)	hspbap1 (ENSTRUG00000021585)	slc49a4 (ENSTRUG00000014109)	SEMA5B (ENSTRUG00000014169)	pdia5 (ENSTRUG00000014202)	sec22a (ENSTRUG00000014240)	adcy5 (ENSTRUG00000014280)	hacd2 (ENSTRUG00000014469)	stam2 (ENSTRUG00000014510)	CACNB4 (ENSTRUG00000014531)	arl5a (ENSTRUG00000014614)	TBC1D8 (ENSTRUG00000014914)	PDCL3 (ENSTRUG00000015045)	ENSTRUG00000031657	ENSTRUG00000015072	MAP4K4 (ENSTRUG00000015124) ##22	ENSTRUG00000020129	ENSTRUG00000015305	ENSTRUG00000015378	ENSTRUG00000028440	ENSTRUG00000023550	ENSTRUG00000015402	ENSTRUG00000015416 ##24	ENSTRUG00000021536 ##36	ENSTRUG00000015562	ENSTRUG00000015592	mphosph8 (ENSTRUG00000015641)	ZMYM2 (ENSTRUG00000015685)	gja3 (ENSTRUG00000019543)	ENSTRUG00000024433	gjb8 (ENSTRUG00000015746)
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00970000193758	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Ballan wrasse	MODERN SPECIES	324		hacd2 (ENSLBEG00000016611)	stam2 (ENSLBEG00000016583)	CACNB4 (ENSLBEG00000016524)	arl5a (ENSLBEG00000016471)	ENSLBEG00000016103	ENSLBEG00000015808	ENSLBEG00000015671	ENSLBEG00000015633	ENSLBEG00000015613	TBC1D8 (ENSLBEG00000015524)	ENSLBEG00000015426	ENSLBEG00000015394	ENSLBEG00000015379	ENSLBEG00000015344	ENSLBEG00000013709 ##22	ENSLBEG00000012883	ENSLBEG00000012864	ENSLBEG00000012809	ENSLBEG00000012767	ENSLBEG00000012750	ENSLBEG00000012729	ENSLBEG00000012710 ##23	ENSLBEG00000012668 ##24	tsn (ENSLBEG00000012620)
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566	ENSGT01030000234513.B.b.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000155107.b.b ##23	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566	ENSGT01030000234513.B.b.c
European seabass	MODERN SPECIES	5	hspbap1 (ENSDLAG00005014311)	slc49a4 (ENSDLAG00005014330)	SEMA5B (ENSDLAG00005004374)	pdia5 (ENSDLAG00005004909)	sec22a (ENSDLAG00005006152)	adcy5 (ENSDLAG00005006190)	hacd2 (ENSDLAG00005006469)	stam2 (ENSDLAG00005006515)	ENSDLAG00005006755	NEB (ENSDLAG00005007636)	TBC1D8 (ENSDLAG00005012005)	ENSDLAG00005012252	ENSDLAG00005032770	ENSDLAG00005028200	ENSDLAG00005012269	MAP4K4 (ENSDLAG00005012299) ##22	ENSDLAG00005013606	ENSDLAG00005021859	ENSDLAG00005033897	ENSDLAG00005028942	ENSDLAG00005032291 ##23	ENSDLAG00005011805 ##24	ENSDLAG00005011714 ##36	ENSDLAG00005011671	ENSDLAG00005011655	ENSDLAG00005011293	ENSDLAG00005026754	ZMYM2 (ENSDLAG00005011238)	gja3 (ENSDLAG00005028270)	cryl1 (ENSDLAG00005011214)	ift88 (ENSDLAG00005010642)
Large yellow croaker	MODERN SPECIES		asb5a (ENSLCRG00005017272)	spata4 (ENSLCRG00005017271)	gpm6aa (ENSLCRG00005017241)	lrit3a (ENSLCRG00005017237)	egf (ENSLCRG00005017229)	elovl6 (ENSLCRG00005017225)	pitx2 (ENSLCRG00005017213)	zgc:77938 (ENSLCRG00005017209)	gar1 (ENSLCRG00005017208)	ENSLCRG00005017050	eif4ea (ENSLCRG00005017003)	ENSLCRG00005017001	ENSLCRG00005017000	LINGO2 (ENSLCRG00005016999)	ENSLCRG00005016998	ENSLCRG00005000477 ##22	ENSLCRG00005000043	ENSLCRG00005000042	ENSLCRG00005000041	ENSLCRG00005000040	ENSLCRG00005000039
Gilthead seabream	MODERN SPECIES	23	slc49a4 (ENSSAUG00010021301)	SEMA5B (ENSSAUG00010020834)	pdia5 (ENSSAUG00010019555)	sec22a (ENSSAUG00010019528)	adcy5 (ENSSAUG00010019016)	hacd2 (ENSSAUG00010019006)	stam2 (ENSSAUG00010018342)	CACNB4 (ENSSAUG00010014802)	arl5a (ENSSAUG00010014726)	NEB (ENSSAUG00010014596)	TBC1D8 (ENSSAUG00010014571)	PDCL3 (ENSSAUG00010014568)	ENSSAUG00010014564	ENSSAUG00010014561	LONRF2 (ENSSAUG00010014559)	ENSSAUG00010010134 ##22	IL-1RII (ENSSAUG00010010063)	ENSSAUG00010010059	ENSSAUG00010010054	ENSSAUG00010010048	ENSSAUG00010010047 ##23	ENSSAUG00010006712 ##24	ENSSAUG00010006541 ##36	ENSSAUG00010006524	ENSSAUG00010006514	ENSSAUG00010006096	mphosph8 (ENSSAUG00010006024)	ZMYM2 (ENSSAUG00010006018)	gja3 (ENSSAUG00010006014)	gjb8 (ENSSAUG00010006012)	ENSSAUG00010006010
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.c.a	ENSGT00940000154714	ENSGT00940000154533.a.a.a	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT01090000260082.d.a.b.o.b ##24	ENSGT00940000154633.id.a ##36	ENSGT00940000157559	ENSGT00530000063927.a.b	ENSGT00940000165376	ENSGT00940000165604	ENSGT00730000111087	ENSGT00940000157028	ENSGT01050000244864.B.b.a.b	ENSGT01040000240566	ENSGT01030000234513.B.b.c
Pike perch	MODERN SPECIES	1	hspbap1 (ENSSLUG00000013535)	slc49a4 (ENSSLUG00000013529)	SEMA5B (ENSSLUG00000013249)	pdia5 (ENSSLUG00000012869)	sec22a (ENSSLUG00000012812)	adcy5 (ENSSLUG00000012654)	hacd2 (ENSSLUG00000012624)	stam2 (ENSSLUG00000012489)	CACNB4 (ENSSLUG00000012215)	arl5a (ENSSLUG00000012181)	NEB (ENSSLUG00000011637)	TBC1D8 (ENSSLUG00000011558)	PDCL3 (ENSSLUG00000011547)	ENSSLUG00000011540	ENSSLUG00000011528	ENSSLUG00000011001 ##22	ENSSLUG00000010918	ENSSLUG00000010893	ENSSLUG00000010872	ENSSLUG00000010866	ENSSLUG00000010860	RDX (ENSSLUG00000009314) ##24	ENSSLUG00000009173 ##36	ENSSLUG00000009141	ENSSLUG00000009127	ENSSLUG00000008982	mphosph8 (ENSSLUG00000008969)	ZMYM2 (ENSSLUG00000008951)	ENSSLUG00000008938	gja3 (ENSSLUG00000008936)	gjb8 (ENSSLUG00000008932)
Cod	MODERN SPECIES	12	ENSGMOG00000005340	ENSGMOG00000005328	SUCLA2 (ENSGMOG00000005314)	med4 (ENSGMOG00000005297)	ITM2B (ENSGMOG00000005286)	ENSGMOG00000005254	ENSGMOG00000005241 ##17	lcp1 (ENSGMOG00000005215)	cnot11 (ENSGMOG00000005200)	rpl31 (ENSGMOG00000026515) #20	ENSGMOG00000027052	ENSGMOG00000000757	PDCL3 (ENSGMOG00000000790)	ENSGMOG00000022311	ENSGMOG00000025691	ENSGMOG00000004144 ##22	ENSGMOG00000001478	ENSGMOG00000032866	ENSGMOG00000009640	ENSGMOG00000007170	fundc1 (ENSGMOG00000007162)	ENSGMOG00000007134	ccdc80 (ENSGMOG00000031614)	slc35a5 (ENSGMOG00000007111)	f5 (ENSGMOG00000031050)	f5 (ENSGMOG00000034559)	f5 (ENSGMOG00000031996)	rgcc (ENSGMOG00000003645)	vwa8 (ENSGMOG00000007060)	DGKH (ENSGMOG00000007040)	AKAP11 (ENSGMOG00000032401)
Protacanthopterygii	ANCESTRAL SPECIES	25	ENSGT00390000011864	ENSGT01050000244937.a.a	ENSGT00390000010170.a.b	ENSGT00390000012063	ENSGT00950000183115.b.a.m.a	ENSGT00940000160136.p	ENSGT00960000190972	ENSGT00550000075118.l ##17	ENSGT00950000183097.a.a.b	ENSGT00390000006356	ENSGT00950000183030.c.a #20	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00440000033329.b.a.a.d	ENSGT00940000155063.a.a ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b	ENSGT01090000259985.b.a.a.a	ENSGT00940000165507	ENSGT00390000016619.a.j	ENSGT00940000156472.d	ENSGT00940000157043	ENSGT00940000160192.b	ENSGT00940000158532	ENSGT00940000160478.e	ENSGT00940000157578	ENSGT00940000158443.m	ENSGT00940000155392	ENSGT00940000153458.B
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	16	ENSGT00390000012063.s.a	ENSGT00940000159528.h	ENSGT00390000011864.rb	ENSGT01050000244937.a.a.o	ENSGT00390000010170.a.b.eb	ENSGT00390000012063.s.b	ENSGT00950000183115.b.a.m.a.e	ENSGT00940000160136.p	ENSGT00550000075118.l ##17	ENSGT00950000183097.a.a.b.c	ENSGT00390000006356.f	ENSGT00950000183030.c.b.b.b #20	ENSGT00940000158977.a	ENSGT00940000154295.db	ENSGT00440000033329.b.a.a.d.a	ENSGT00940000155063.a.a.a ##22	ENSGT01090000259985.b.b.b.a.b.a	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000155558.f	ENSGT00940000165507.d
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000154265.kc.a.a	ENSGT00940000159528.h	ENSGT00390000011864.rb	ENSGT01050000244937.a.a.o	ENSGT00390000010170.a.b.eb	ENSGT00390000012063.s.b	ENSGT00950000183115.b.a.m.a.e.b	ENSGT00940000160136.p	ENSGT00950000183097.a.a.b.c	ENSGT00390000006356.f	ENSGT00950000183030.c.a.b.a.b #20	ENSGT00940000158977.a	ENSGT00940000154295.db	ENSGT00940000175639.d	ENSGT00440000033329.b.a.a.d.a	ENSGT00940000155063.a.a.a ##22	ENSGT01090000259985.b.b.b.a.b.a.a	ENSGT01090000259985.b.b.b.a.b.a.b	ENSGT00940000155558.e	ENSGT00940000165507.c	ENSGT00390000016619.a.j.a	ENSGT00940000156472.d.a	ENSGT00940000157043.i.a	ENSGT00940000160192.b.b	ENSGT00940000158532.i	ENSGT00940000160478.e.b	ENSGT00940000157578.ib.a	ENSGT00940000158443.m.a	ENSGT00940000155392.c	ENSGT00940000153458.B.n	ENSGT00940000155611.j.b
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000162297.c.a.e	ENSGT00940000159528.h	ENSGT00390000011864.rb	ENSGT01050000244937.a.a.o	ENSGT00390000010170.a.b.eb	ENSGT00390000012063.t	ENSGT00950000183115.b.a.m.a.e.b	ENSGT00940000160136.p	ENSGT00950000183097.a.a.b.c	ENSGT00390000006356.f	ENSGT00950000183030.c.a.b.a.b #20	ENSGT00940000158977.a	ENSGT00940000154295.db	ENSGT00940000175639.d	ENSGT00440000033329.b.a.a.d.a	ENSGT00940000155063.a.a.a ##22	ENSGT01090000259985.b.b.b.a.b.a.a	ENSGT01090000259985.b.b.b.a.b.a.b	ENSGT00940000155558.e	ENSGT00940000165507.c	ENSGT00390000016619.a.j.a	ENSGT00940000156472.d.a	ENSGT00940000157043.i.a	ENSGT00940000160192.b.b	ENSGT00940000158532.i	ENSGT00940000160478.e.b	ENSGT00940000157578.ib.a	ENSGT00940000158443.m.a	ENSGT00940000155392.c	ENSGT00940000153458.B.n	ENSGT00940000155611.j.b
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000113161	LRCH1 (ENSSSAG00000055653)	ENSSSAG00000084542	estd (ENSSSAG00000055788)	HTR2A (ENSSSAG00000091455)	SUCLA2 (ENSSSAG00000055813)	ENSSSAG00000056404	ENSSSAG00000056416	lcp1 (ENSSSAG00000056451)	cnot11 (ENSSSAG00000056969)	rpl31 (ENSSSAG00000057006) #20	ENSSSAG00000057073	PDCL3 (ENSSSAG00000058071)	ENSSSAG00000116479	ENSSSAG00000106103	ENSSSAG00000059162 ##22	ENSSSAG00000077028	dnajc10 (ENSSSAG00000077054)	ENSSSAG00000085691	frzb (ENSSSAG00000106562)	nckap1 (ENSSSAG00000077458)	dusp19a (ENSSSAG00000078722)	PDE1A (ENSSSAG00000078734)	ENSSSAG00000078786	ITPRID2 (ENSSSAG00000078792)	neurod1 (ENSSSAG00000099263)	cerkl (ENSSSAG00000078804)	ENSSSAG00000119408	ITGA4 (ENSSSAG00000078815)	ube2e3 (ENSSSAG00000078823)	cwc22 (ENSSSAG00000078849)
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000159528.h	ENSGT00390000011864.rb	ENSGT01050000244937.a.a.o	ENSGT00390000010170.a.b.eb	ENSGT00390000012063.s.b	ENSGT00950000183115.b.a.m.a.e.b	ENSGT00940000160136.p	ENSGT00960000190972	ENSGT00950000183097.a.a.b.c	ENSGT00390000006356.f	ENSGT00950000183030.c.a.b.a.a.a #20	ENSGT00940000158977.a	ENSGT00940000154295.db	ENSGT00940000175639.d	ENSGT00440000033329.b.a.a.d.a	ENSGT00940000155063.a.a.a ##22	ENSGT01090000259985.b.b.b.a.b.a.a	ENSGT01090000259985.b.b.b.a.b.a.b	ENSGT00940000155558.e	ENSGT00940000165507.c	ENSGT00390000016619.a.j.a	ENSGT00940000156472.d.a	ENSGT00940000157043.i.a	ENSGT01000000220516	ENSGT00940000158532.i	ENSGT00940000160478.e.b	ENSGT00940000157578.ib.a	ENSGT00940000158443.m.a	ENSGT00940000155392.c	ENSGT00940000153458.B.n	ENSGT00940000155611.j.b
Coho salmon	MODERN SPECIES	18	esd (ENSOKIG00005028857)	HTR2A (ENSOKIG00005028884)	SUCLA2 (ENSOKIG00005028903)	med4 (ENSOKIG00005029093)	itm2bb (ENSOKIG00005029147)	ENSOKIG00005029175	ENSOKIG00005029197	lcp1 (ENSOKIG00005029274)	ENSOKIG00005030096	cnot11 (ENSOKIG00005030107)	rpl31 (ENSOKIG00005030157) #20	TBC1D8 (ENSOKIG00005030257)	PDCL3 (ENSOKIG00005030447)	ENSOKIG00005030460	ENSOKIG00005030487	ENSOKIG00005030663 ##22	ENSOKIG00005031919	ENSOKIG00005031932	dnajc10 (ENSOKIG00005032059)	frzb (ENSOKIG00005033834)	nckap1 (ENSOKIG00005033947)	dusp19a (ENSOKIG00005035612)	PDE1A (ENSOKIG00005035676)	ENSOKIG00005036139	ENSOKIG00005036146	ITPRID2 (ENSOKIG00005036174)	neurod1 (ENSOKIG00005036184)	cerkl (ENSOKIG00005036204)	ITGA4 (ENSOKIG00005036271)	ube2e3 (ENSOKIG00005037048)	cwc22 (ENSOKIG00005037105)
Chinook salmon	MODERN SPECIES	18	esd (ENSOTSG00005010786)	ENSOTSG00005010787	HTR2A (ENSOTSG00005010788)	sucla2 (ENSOTSG00005009829)	med4 (ENSOTSG00005009890)	itm2bb (ENSOTSG00005009891)	ENSOTSG00005009892	ENSOTSG00005009893	lcp1 (ENSOTSG00005009919)	cnot11 (ENSOTSG00005009984)	rpl31 (ENSOTSG00005009985) #20	TBC1D8 (ENSOTSG00005009989)	ENSOTSG00005010062	ENSOTSG00005010063	ENSOTSG00005010065	ENSOTSG00005010066 ##22	ENSOTSG00005010793	dnajc10 (ENSOTSG00005010796)	frzb (ENSOTSG00005011166)	nckap1 (ENSOTSG00005011185)	dusp19a (ENSOTSG00005013212)	ENSOTSG00005013213	PDE1A (ENSOTSG00005013217)	ENSOTSG00005013219	ITPRID2 (ENSOTSG00005013221)	ENSOTSG00005013223	neurod1 (ENSOTSG00005013225)	cerkl (ENSOTSG00005013229)	ITGA4 (ENSOTSG00005013236)	ube2e3 (ENSOTSG00005013252)	cwc22 (ENSOTSG00005013254)
Huchen	MODERN SPECIES	522	ENSHHUG00000031388	LRCH1 (ENSHHUG00000031416)	esd (ENSHHUG00000031465)	HTR2A (ENSHHUG00000031509)	sucla2 (ENSHHUG00000031512)	med4 (ENSHHUG00000031560)	itm2bb (ENSHHUG00000031623)	ENSHHUG00000031628	alg11 (ENSHHUG00000031665) ##17	lcp1 (ENSHHUG00000031671)	cnot11 (ENSHHUG00000031715)	rpl31 (ENSHHUG00000031731) #20	TBC1D8 (ENSHHUG00000031752)	PDCL3 (ENSHHUG00000031762)	ENSHHUG00000031786	ENSHHUG00000031815 ##22	ENSHHUG00000032286	ENSHHUG00000032304	ENSHHUG00000032312	dnajc10 (ENSHHUG00000032322)	frzb (ENSHHUG00000032344)	nckap1 (ENSHHUG00000032350)	dusp19a (ENSHHUG00000032409)	PDE1A (ENSHHUG00000032462)	ppp1r1c (ENSHHUG00000032845)	ITPRID2 (ENSHHUG00000032849)	ENSHHUG00000032863	neurod1 (ENSHHUG00000032866)	cerkl (ENSHHUG00000032869)	ITGA4 (ENSHHUG00000032940)	ube2e3 (ENSHHUG00000032984)
Salmoninae	ANCESTRAL SPECIES	16	ENSGT00390000006356.f	ENSGT00950000183030.c.b.b.b #20	ENSGT00940000158977.a	ENSGT00940000154295.db	ENSGT00440000033329.b.a.a.d.a	ENSGT00940000155063.a.a.a ##22	ENSGT01090000259985.b.b.b.a.b.a	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000155558.f	ENSGT00940000165507.d	ENSGT00390000016619.a.j.b	ENSGT00940000156472.d.b	ENSGT00940000157043.i.b	ENSGT00940000160192.b.a	ENSGT00940000158532.j	ENSGT00940000160478.e.a	ENSGT00940000157578.ib.b	ENSGT00940000158443.m.b	ENSGT00940000155392.d	ENSGT00940000153458.B.m
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000159528.g	ENSGT00390000011864.sb	ENSGT01050000244937.a.a.p	ENSGT00390000010170.a.b.db	ENSGT00390000012063.s.a	ENSGT00950000183115.b.a.m.a.f	ENSGT00550000075118.l ##17	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.a.b.a.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639.c	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000155558.f	ENSGT00940000165507.d	ENSGT00390000016619.a.j.b	ENSGT00940000156472.d.b	ENSGT00940000157043.i.b	ENSGT00940000160192.b.a	ENSGT00940000158532.j	ENSGT00940000160478.e.a	ENSGT00940000157578.ib.b	ENSGT00940000158443.m.b	ENSGT00940000155392.d	ENSGT00940000153458.B.m
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000159528.g	ENSGT00390000011864.sb	ENSGT01050000244937.a.a.p	ENSGT00390000010170.a.b.db	ENSGT00390000012063.s.a	ENSGT00950000183115.b.a.m.a.f	ENSGT00550000075118.l ##17	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.a.b.a.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639.c	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b.c	ENSGT00940000155558.f	ENSGT00940000165507.d	ENSGT00390000016619.a.j.b	ENSGT00940000156472.d.b	ENSGT00940000157043.i.b	ENSGT00940000160192.b.a	ENSGT00940000158532.j	ENSGT00940000160478.e.a	ENSGT00940000157578.ib.b	ENSGT00940000158443.m.b	ENSGT00940000155392.d	ENSGT00940000153458.B.m
Atlantic salmon	MODERN SPECIES	17	RUBCNL (ENSSSAG00000080107)	LRCH1 (ENSSSAG00000080097)	HTR2A (ENSSSAG00000088280)	SUCLA2 (ENSSSAG00000079929)	MED4 (ENSSSAG00000079881)	ITM2B (ENSSSAG00000079874)	ENSSSAG00000079872 ##17	lrrc63 (ENSSSAG00000079870)	lcp1 (ENSSSAG00000079493)	cnot11 (ENSSSAG00000079459)	rpl31 (ENSSSAG00000098459) #20	ENSSSAG00000079412	PDCL3 (ENSSSAG00000079401)	ENSSSAG00000089412	ENSSSAG00000079397	ENSSSAG00000070255 ##22	ENSSSAG00000069905	ENSSSAG00000069897	il-1rl (ENSSSAG00000069876)	dnajc10 (ENSSSAG00000066165)	frzb (ENSSSAG00000105610)	nckap1 (ENSSSAG00000065433)	dusp19a (ENSSSAG00000098453)	PDE1A (ENSSSAG00000064668)	ENSSSAG00000064627	ndf1 (ENSSSAG00000064625)	cerkl (ENSSSAG00000064618)	itga4 (ENSSSAG00000064161)	ube2e3 (ENSSSAG00000064121)	ENSSSAG00000097702	cwc22 (ENSSSAG00000064032)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000159528.g	ENSGT00390000011864.sb	ENSGT01050000244937.a.a.p	ENSGT00390000010170.a.b.db	ENSGT00390000012063.t	ENSGT00950000183115.b.a.m.a.f	ENSGT00550000075118.l ##17	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.b.b.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639.c	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000165507.d	ENSGT00390000016619.a.j.b	ENSGT00940000156472.d.b	ENSGT00940000157043.i.b	ENSGT00940000160192.b.a	ENSGT00940000158532.j	ENSGT00940000160478.e.a	ENSGT00940000157578.ib.b	ENSGT00940000158443.m.b	ENSGT00940000155392.d	ENSGT00940000153458.B.m	ENSGT00940000155611.j.a
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000159528.g	ENSGT00390000011864.sb	ENSGT01050000244937.a.a.p	ENSGT00390000010170.a.b.db	ENSGT00390000012063.s.a	ENSGT00950000183115.b.a.m.a.f	ENSGT00550000075118.l ##17	ENSGT00940000173214	ENSGT00950000183097.a.a.b.d	ENSGT00390000006356.e	ENSGT00950000183030.c.b.b.a #20	ENSGT00940000158977.b	ENSGT00940000154295.eb	ENSGT00940000175639.c	ENSGT00440000033329.b.a.a.d.b	ENSGT00940000155063.a.a.b ##22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b.b	ENSGT01090000259985.b.a.a.b	ENSGT00940000165507.d	ENSGT00390000016619.a.j.b	ENSGT00940000156472.d.b	ENSGT00940000157043.i.b	ENSGT00940000160192.b.a	ENSGT00940000158532.j	ENSGT00940000160478.e.a	ENSGT00940000157578.ib.b	ENSGT00940000158443.m.b	ENSGT00940000155392.d	ENSGT00940000153458.B.m	ENSGT00940000155611.j.a
Rainbow trout	MODERN SPECIES	21	HTR2A (ENSOMYG00000060656)	SUCLA2 (ENSOMYG00000005173)	MED4 (ENSOMYG00000004791)	itm2bb (ENSOMYG00000004688)	ENSOMYG00000004647 ##17	ENSOMYG00000004619	lcp1 (ENSOMYG00000004229)	cnot11 (ENSOMYG00000046273)	rpl31 (ENSOMYG00000046262) #20	ENSOMYG00000065981	ENSOMYG00000046232	ENSOMYG00000053881	ENSOMYG00000046246	ENSOMYG00000046220	ENSOMYG00000048831	ENSOMYG00000040833 ##22	il-1rii (ENSOMYG00000039543)	ENSOMYG00000039521	il-1r1 (ENSOMYG00000039487)	ENSOMYG00000039463	ENSOMYG00000058071	frzb (ENSOMYG00000068149)	nckap1 (ENSOMYG00000037353)	dusp19a (ENSOMYG00000074918)	PDE1A (ENSOMYG00000033454)	PPP1R1C (ENSOMYG00000032985)	ITPRID2 (ENSOMYG00000069667)	neurod1 (ENSOMYG00000032956)	cerkl (ENSOMYG00000032946)	ITGA4 (ENSOMYG00000032923)	ube2e3 (ENSOMYG00000032901)
Huchen	MODERN SPECIES	963													TBC1D8 (ENSHHUG00000030083)	PDCL3 (ENSHHUG00000030069)	ENSHHUG00000030065	ENSHHUG00000029247 ##22	ENSHHUG00000029230	ENSHHUG00000029226	ENSHHUG00000029218	ENSHHUG00000029210	ENSHHUG00000029207	frzb (ENSHHUG00000029202)	nckap1 (ENSHHUG00000029046)	dusp19a (ENSHHUG00000029037)	ENSHHUG00000029032
Northern pike	MODERN SPECIES	15	LRCH1 (ENSELUG00000008769)	esd (ENSELUG00000008859)	sucla2 (ENSELUG00000008886)	med4 (ENSELUG00000008922)	itm2bb (ENSELUG00000008932)	ENSELUG00000008978	alg11 (ENSELUG00000009006) ##17	ENSELUG00000009024	lcp1 (ENSELUG00000009075)	cnot11 (ENSELUG00000009042)	rpl31 (ENSELUG00000009093) #20	TBC1D8 (ENSELUG00000009165)	PDCL3 (ENSELUG00000009203)	ENSELUG00000009235	ENSELUG00000009261	ENSELUG00000000350 ##22	ENSELUG00000029809	ENSELUG00000026731	ENSELUG00000009739	ENSELUG00000009775	dnajc10 (ENSELUG00000009860)	frzb (ENSELUG00000009897)	nckap1 (ENSELUG00000010159)	dusp19a (ENSELUG00000010201)	PDE1A (ENSELUG00000010287)	ENSELUG00000010311	ITPRID2 (ENSELUG00000010347)	neurod1 (ENSELUG00000025582)	cerkl (ENSELUG00000010421)	ITGA4 (ENSELUG00000010469)	ube2e3 (ENSELUG00000010488)
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT00940000157232	ENSGT00940000165617	ENSGT00550000074800.a.a.a	ENSGT00940000163195.B.b	ENSGT00390000002753	ENSGT00940000158859.e	ENSGT01030000234607.B ##13	ENSGT00940000157954	ENSGT00940000165303	ENSGT00940000155863	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063.b ##22	ENSGT00940000159309	ENSGT00940000160673	ENSGT00940000178351	ENSGT00940000155526.i.a	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442.p	ENSGT00940000155963.f	ENSGT00390000007069	ENSGT00940000160029	ENSGT00940000160127	ENSGT00940000155353.a.a.a
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000157232	ENSGT00940000165617	ENSGT00940000163195.B.b	ENSGT00390000002753.g	ENSGT00940000158859.e	ENSGT01030000234607.B ##13	ENSGT00940000157954	ENSGT00940000165303	ENSGT00940000155863	ENSGT00390000007662.d.b	ENSGT00390000007741.b	ENSGT00940000159106.b	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063.b ##22	ENSGT00940000159309	ENSGT00940000160673	ENSGT00940000155526.i.a	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442.p	ENSGT00390000007069	ENSGT00940000160029	ENSGT00940000160127.j	ENSGT00940000155353.a.a.a	ENSGT01030000234646.B.a.a.b	ENSGT00940000164127.a
Salmoninae	ANCESTRAL SPECIES	6	ENSGT00390000002220	ENSGT00940000166545	ENSGT00940000158665.c.l	ENSGT00940000164857	ENSGT00940000157232.s	ENSGT00940000165617	ENSGT00940000163195.B.b.c	ENSGT00390000002753.g	ENSGT00940000158859.e.g	ENSGT01030000234607.B ##13	ENSGT00940000157954.l	ENSGT00940000155863.c.b	ENSGT00830000128380.jb	ENSGT00390000000227	ENSGT00950000183075.a.b.t	ENSGT00940000155063.b ##22	ENSGT00940000159309.d.a	ENSGT00940000160673.e	ENSGT00940000155526.i.a.f	ENSGT00390000008686.d.b.c	ENSGT00950000182984.b.a.b.e.b	ENSGT00940000159683	ENSGT00950000183197.b.b.e	ENSGT00940000155442.p.d	ENSGT00940000155963.e.g.a	ENSGT00390000007069.c	ENSGT00940000160029.c	ENSGT00940000160127.j.b	ENSGT00940000155353.a.a.a.h	ENSGT01030000234646.B.a.a.b.d	ENSGT00940000164127.a.g
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000166545	ENSGT00940000158665.c.l	ENSGT00940000164857	ENSGT00940000157232.s	ENSGT00940000165617	ENSGT00940000163195.B.b.c	ENSGT00390000002753.g	ENSGT00940000158859.e.g	ENSGT01030000234607.B ##13	ENSGT00940000157954.l	ENSGT00940000155863.c.b	ENSGT00940000159106.b.d.a	ENSGT00830000128380.jb	ENSGT00390000000227	ENSGT00950000183075.a.b.t	ENSGT00940000155063.b ##22	ENSGT00940000159309.d.b	ENSGT00940000160673.e	ENSGT00940000155526.i.a.f	ENSGT00390000008686.d.b.c	ENSGT00950000182984.b.a.b.e.b	ENSGT00940000159683	ENSGT00950000183197.b.b.e	ENSGT00940000155442.p.d	ENSGT00940000155963.e.g.a	ENSGT00390000007069.c	ENSGT00940000160029.c	ENSGT00940000160127.j.b	ENSGT00940000155353.a.a.a.h	ENSGT01030000234646.B.a.a.b.d	ENSGT00940000164127.a.g
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000166545	ENSGT00940000158665.c.l	ENSGT00940000164857	ENSGT00940000157232.s	ENSGT00940000165617	ENSGT00940000163195.B.b.c	ENSGT00390000002753.g	ENSGT00940000158859.e.g	ENSGT01030000234607.B ##13	ENSGT00940000157954.l	ENSGT00940000155863.c.b	ENSGT00940000159106.b.d.a	ENSGT00830000128380.jb	ENSGT00390000000227	ENSGT00950000183075.a.b.t	ENSGT00940000155063.b ##22	ENSGT00940000160673.e	ENSGT00940000155526.i.a.f	ENSGT00390000008686.d.b.c	ENSGT00950000182984.b.a.b.e.b	ENSGT00940000159683	ENSGT00950000183197.b.b.e	ENSGT00940000155442.p.d	ENSGT00940000155963.e.g.a	ENSGT00390000007069.c	ENSGT00940000160029.c	ENSGT00940000160127.j.b	ENSGT00940000155353.a.a.a.h	ENSGT01030000234646.B.a.a.b.d	ENSGT00940000164127.a.g	ENSGT00940000156075.a.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000166545	ENSGT00940000158665.c.l	ENSGT00940000164857	ENSGT00940000157232.s	ENSGT00940000165617	ENSGT00940000163195.B.b.c	ENSGT00390000002753.g	ENSGT00940000158859.e.g	ENSGT01030000234607.B ##13	ENSGT00940000157954.l	ENSGT00940000155863.c.b	ENSGT00940000159106.b.d.a	ENSGT00830000128380.jb	ENSGT00390000000227	ENSGT00950000183075.a.b.t	ENSGT00940000155063.b ##22	ENSGT00940000160673.e	ENSGT00940000155526.i.a.f	ENSGT00390000008686.d.b.c	ENSGT00950000182984.b.a.b.e.b	ENSGT00940000159683	ENSGT00950000183197.b.b.e	ENSGT00940000155442.p.d	ENSGT00940000155963.e.g.a	ENSGT00390000007069.c	ENSGT00940000160029.c	ENSGT00940000160127.j.b	ENSGT00940000155353.a.a.a.h	ENSGT01030000234646.B.a.a.b.d	ENSGT00940000164127.a.g	ENSGT00940000156075.a.a.g
Coho salmon	MODERN SPECIES	18	ENSOKIG00005037041	dhrs9 (ENSOKIG00005042873)	rdh1 (ENSOKIG00005042904)	lrp2a (ENSOKIG00005043132)	zgc:172182 (ENSOKIG00005044791)	col28a2a (ENSOKIG00005044808)	bbs5 (ENSOKIG00005044863)	klhl41a (ENSOKIG00005044911)	fastkd1 (ENSOKIG00005045029) ##13	PPIG (ENSOKIG00005045117)	phgdh (ENSOKIG00005045344)	KLHL23 (ENSOKIG00005045748)	SSB (ENSOKIG00005045756)	mettl5 (ENSOKIG00005045850)	ubr3 (ENSOKIG00005045918)	ENSOKIG00005046342 ##22	ENSOKIG00005046355	sp5a (ENSOKIG00005046365)	GAD1 (ENSOKIG00005046478)	GORASP2 (ENSOKIG00005048023)	TLK1 (ENSOKIG00005048065)	mettl8 (ENSOKIG00005048200)	cybrd1 (ENSOKIG00005048211)	ENSOKIG00005048214	DYNC1I2 (ENSOKIG00005048288)	SLC25A12 (ENSOKIG00005048635)	hat1 (ENSOKIG00005048791)	dlx1a (ENSOKIG00005048797)	DLX2 (ENSOKIG00005048804)	ITGA6 (ENSOKIG00005048913)	ENSOKIG00005049161
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005043719	dhrs9 (ENSOTSG00005047659)	rdh1 (ENSOTSG00005047660)	lrp2a (ENSOTSG00005047662)	zgc:172182 (ENSOTSG00005047700)	col28a2a (ENSOTSG00005047701)	bbs5 (ENSOTSG00005047703)	klhl41a (ENSOTSG00005047704)	fastkd1 (ENSOTSG00005047705) ##13	PPIG (ENSOTSG00005047706)	phgdh (ENSOTSG00005047707)	KLHL23 (ENSOTSG00005047708)	ssb (ENSOTSG00005047709)	mettl5 (ENSOTSG00005047710)	ubr3 (ENSOTSG00005047714)	ENSOTSG00005047737 ##22	sp5a (ENSOTSG00005047739)	GAD1 (ENSOTSG00005047745)	GORASP2 (ENSOTSG00005047765)	TLK1 (ENSOTSG00005047766)	mettl8 (ENSOTSG00005047767)	cybrd1 (ENSOTSG00005047768)	DYNC1I2 (ENSOTSG00005047769)	SLC25A12 (ENSOTSG00005047797)	ENSOTSG00005047807	hat1 (ENSOTSG00005047808)	dlx1a (ENSOTSG00005047809)	DLX2 (ENSOTSG00005047810)	ITGA6 (ENSOTSG00005047812)	PDK1 (ENSOTSG00005047817)	ENSOTSG00005047818
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000048252	dhrs9 (ENSOMYG00000027774)	rdh1 (ENSOMYG00000027766)	lrp2a (ENSOMYG00000027259)	zgc:172182 (ENSOMYG00000026895)	col28a2a (ENSOMYG00000026869)	bbs5 (ENSOMYG00000026737)	klhl41a (ENSOMYG00000026640)	fastkd1 (ENSOMYG00000026590) ##13	PPIG (ENSOMYG00000026522)	phgdh (ENSOMYG00000026453)	KLHL23 (ENSOMYG00000026440)	SSB (ENSOMYG00000026055)	mettl5 (ENSOMYG00000025924)	ubr3 (ENSOMYG00000024807)	ENSOMYG00000064928 ##22	ENSOMYG00000061434	sp5a (ENSOMYG00000024143)	ENSOMYG00000071213	GAD1 (ENSOMYG00000023636)	GORASP2 (ENSOMYG00000023381)	TLK1 (ENSOMYG00000021652)	mettl8 (ENSOMYG00000021306)	cybrd1 (ENSOMYG00000021286)	DYNC1I2 (ENSOMYG00000020851)	SLC25A12 (ENSOMYG00000017962)	ENSOMYG00000017687	ENSOMYG00000069260	DLX1 (ENSOMYG00000017667)	DLX2 (ENSOMYG00000017658)	ITGA6 (ENSOMYG00000011949)
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000166545	ENSGT00940000158665.c.l	ENSGT00940000164857	ENSGT00940000157232.s	ENSGT00940000165617	ENSGT00940000163195.B.b.c	ENSGT00390000002753.g	ENSGT00940000158859.e.g	ENSGT01030000234607.B ##13	ENSGT00940000157954.l	ENSGT00940000155863.c.b	ENSGT00940000159106.b.d.a	ENSGT00830000128380.jb	ENSGT00390000000227	ENSGT00950000183075.a.b.t	ENSGT00940000155063.b ##22	ENSGT00940000159309.d.b	ENSGT00940000160673.e	ENSGT00940000155526.i.a.f	ENSGT00390000008686.d.b.c	ENSGT00950000182984.b.a.b.e.b	ENSGT00940000159683.c	ENSGT00950000183197.b.b.e	ENSGT00940000155442.p.d	ENSGT00940000155963.e.g.a	ENSGT00390000007069.c	ENSGT00940000160029.c	ENSGT00940000160127.j.b	ENSGT00940000155353.a.a.a.h	ENSGT01030000234646.B.a.a.b.d	ENSGT00940000164127.a.g
River trout	MODERN SPECIES	12	ENSSTUG00000006302	dhrs9 (ENSSTUG00000006212)	rdh1 (ENSSTUG00000006203)	lrp2a (ENSSTUG00000005733)	zgc:172182 (ENSSTUG00000005706)	col28a2a (ENSSTUG00000005698)	bbs5 (ENSSTUG00000005627)	klhl41a (ENSSTUG00000005587)	ppig (ENSSTUG00000005558)	fastkd1 (ENSSTUG00000005340) ##13	phgdh (ENSSTUG00000005177)	KLHL23 (ENSSTUG00000005157)	ssb (ENSSTUG00000004965)	mettl5 (ENSSTUG00000004792)	ubr3 (ENSSTUG00000002468)	ENSSTUG00000002179 ##22	sp5a (ENSSTUG00000021594)	GAD1 (ENSSTUG00000019499)	GORASP2 (ENSSTUG00000019346)	TLK1 (ENSSTUG00000015931)	mettl8 (ENSSTUG00000015781)	cybrd1 (ENSSTUG00000015765)	DYNC1I2 (ENSSTUG00000014633)	SLC25A12 (ENSSTUG00000014467)	hat1 (ENSSTUG00000014377)	dlx1a (ENSSTUG00000014357)	DLX2 (ENSSTUG00000014349)	ITGA6 (ENSSTUG00000013418)	PDK1 (ENSSTUG00000013250)	ENSSTUG00000013136	RAPGEF4 (ENSSTUG00000012579)
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000047308	dhrs9 (ENSSSAG00000052422)	rdh1 (ENSSSAG00000052431)	lrp2a (ENSSSAG00000052675)	zgc:172182 (ENSSSAG00000054705)	col28a2a (ENSSSAG00000054723)	bbs5 (ENSSSAG00000054778)	ENSSSAG00000118995	fastkd1 (ENSSSAG00000054941) ##13	ppig (ENSSSAG00000055010)	phgdh (ENSSSAG00000100673)	ENSSSAG00000082598	lab (ENSSSAG00000055145)	METTL5 (ENSSSAG00000055322)	ubr3 (ENSSSAG00000055401)	ENSSSAG00000056966 ##22	ENSSSAG00000114497	ENSSSAG00000099806	sp5a (ENSSSAG00000056981)	GAD1 (ENSSSAG00000057067)	GORASP2 (ENSSSAG00000062894)	tlk1 (ENSSSAG00000063010)	mettl8 (ENSSSAG00000068030)	DYNC1I2 (ENSSSAG00000068084)	SLC25A12 (ENSSSAG00000069448)	hat1 (ENSSSAG00000069538)	DLX1 (ENSSSAG00000101402)	DLX2 (ENSSSAG00000110538)	ITGA6 (ENSSSAG00000069787)	ENSSSAG00000096355	PDK1 (ENSSSAG00000070045)
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00940000163195.B.b	ENSGT01090000260278	ENSGT00390000002753	ENSGT00940000158859.e	ENSGT01030000234607.B ##13	ENSGT00940000157954	ENSGT00940000165303	ENSGT00940000155863	ENSGT00390000007662.d.b	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00830000128380	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000159309	ENSGT00940000155063.b ##22	ENSGT00940000160673	ENSGT00940000178351	ENSGT00940000155526.i.a	ENSGT00390000008686.d.b	ENSGT00950000182984.b.a.b.e	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b	ENSGT00940000155442.p	ENSGT00940000155963.f	ENSGT00390000007069	ENSGT00940000160029	ENSGT00940000160127	ENSGT00940000155353.a.a.a	ENSGT00940000161737
Cod	MODERN SPECIES	12	rdh1 (ENSGMOG00000027878)	lrp2a (ENSGMOG00000003139)	zgc:172182 (ENSGMOG00000003120)	ENSGMOG00000003008	ENSGMOG00000002940	bbs5 (ENSGMOG00000002910)	klhl41a (ENSGMOG00000002892)	fastkd1 (ENSGMOG00000002850) ##13	PPIG (ENSGMOG00000002765)	ENSGMOG00000002751	phgdh (ENSGMOG00000002719)	KLHL23 (ENSGMOG00000023721)	SSB (ENSGMOG00000002664)	mettl5 (ENSGMOG00000002643)	ubr3 (ENSGMOG00000002578)	ENSGMOG00000029614 ##22	sp5a (ENSGMOG00000002497)	GAD1 (ENSGMOG00000002464)	GORASP2 (ENSGMOG00000002439)	TLK1 (ENSGMOG00000002397)	mettl8 (ENSGMOG00000002374)	dcaf17 (ENSGMOG00000002358)	cybrd1 (ENSGMOG00000008161)	ENSGMOG00000023386	ENSGMOG00000029758	hat1 (ENSGMOG00000002262)	dlx1a (ENSGMOG00000002250)	DLX2 (ENSGMOG00000037166)	ITGA6 (ENSGMOG00000002164)	ENSGMOG00000031661	PDK1 (ENSGMOG00000002103)
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Yellowtail amberjack	MODERN SPECIES	2270																ENSSLDG00000005065 ##22	ENSSLDG00000005022	ENSSLDG00000004964	ENSSLDG00000004928	ENSSLDG00000004902	ENSSLDG00000004886 ##23	RDX (ENSSLDG00000004822) ##24	ENSSLDG00000004785 ##36
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Perciformes	ANCESTRAL SPECIES	198															ENSGT00390000013183.c	ENSGT00940000155063.b ##22
Perciformes_a	ANCESTRAL SPECIES	292															ENSGT00390000013183.c	ENSGT00940000155063.b ##22
Channel bull blenny	MODERN SPECIES	12	TNK2 (ENSCGOG00000017071)	ENSCGOG00000017026	and1 (ENSCGOG00000017018)	cops9 (ENSCGOG00000017016)	otos (ENSCGOG00000017014)	apodb (ENSCGOG00000017005)	apodb (ENSCGOG00000017001)	ARHGAP21 (ENSCGOG00000016457)	ENSCGOG00000016380	enkur (ENSCGOG00000016376)	THNSL1 (ENSCGOG00000016372)	ENSCGOG00000016370	GPR158 (ENSCGOG00000016366)	anxa13 (ENSCGOG00000016333)	ENSCGOG00000016329	ENSCGOG00000016323 ##22	gad2 (ENSCGOG00000015811)	apbb1ip (ENSCGOG00000015785)	ENSCGOG00000015769	pdss1 (ENSCGOG00000015738)	abi1a (ENSCGOG00000015290)	acbd5a (ENSCGOG00000015251)	mastl (ENSCGOG00000015245)	YME1L1 (ENSCGOG00000014425)	ENSCGOG00000014360	fasn2 (ENSCGOG00000014353)	fasn2 (ENSCGOG00000014346)	rdh12l (ENSCGOG00000014344)	ca2 (ENSCGOG00000014240)	rad51b (ENSCGOG00000014235)	ENSCGOG00000014232
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Chinese medaka	MODERN SPECIES	5244															anxa13 (ENSOSIG00000004331)	ENSOSIG00000004334 ##22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000155063.b ##22
Spiny chromis	MODERN SPECIES	1695					ENSAPOG00000003249	bbs5 (ENSAPOG00000003305)	klhl41a (ENSAPOG00000003344)	fastkd1 (ENSAPOG00000003378) ##13	PPIG (ENSAPOG00000003397)	ENSAPOG00000003410	phgdh (ENSAPOG00000003423)	KLHL23 (ENSAPOG00000003436)	ssb (ENSAPOG00000003448)	mettl5 (ENSAPOG00000003478)	ubr3 (ENSAPOG00000003581)	ENSAPOG00000003605 ##22
Otomorpha	DUPLICATION
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	216	ENSGT00940000159528	ENSGT01040000240539.b	ENSGT00390000011864	ENSGT01050000244937.a.a.r	ENSGT00390000012063	ENSGT00950000183115.b.a.m.a	ENSGT00940000160136.p	ENSGT00960000191502	ENSGT00940000173214	ENSGT00950000183097.a.a.b	ENSGT00390000006356	ENSGT00950000183030 #20	ENSGT00940000158977	ENSGT00940000154295	ENSGT00940000175639	ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b.e	ENSGT01090000259985.b.a.a.a	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	123	ENSGT00940000159160 #18	ENSGT00550000075118 #17	ENSGT00390000009001 #16	ENSGT00940000156552.c.b #15	ENSGT00940000153676.b #27	ENSGT00390000004360.a.b.a.a.b #26	ENSGT00940000157874.q.a #25	ENSGT00940000157872 #30	ENSGT00940000157849.n #31	ENSGT00940000155360.B.k #33	ENSGT00940000163243	ENSGT00390000008846	ENSGT00950000183030 #20	ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.a.a #22
Denticle herring	MODERN SPECIES	6	rbbp9 (ENSDCDG00000016917)	zmynd10 (ENSDCDG00000016923)	gspt1l (ENSDCDG00000016935)	cdadc1 (ENSDCDG00000016937) #27	cab39l (ENSDCDG00000016942) #26	MCF2L (ENSDCDG00000017005) #25	tubgcp3 (ENSDCDG00000020521) #30	ATP11A (ENSDCDG00000020652) #31	arhgef7b (ENSDCDG00000025684) #33	ENSDCDG00000028317	lipt1 (ENSDCDG00000028402)	ITLN1 (ENSDCDG00000028405)	rpl31 (ENSDCDG00000028408) #20	chst10 (ENSDCDG00000028413) #21	LONRF2 (ENSDCDG00000028414)	ENSDCDG00000028443 #22	ugt1b1 (ENSDCDG00000028733)	ugt1b2 (ENSDCDG00000028735)	ENSDCDG00000028742	ENSDCDG00000028747	ENSDCDG00000028750	ENSDCDG00000028754	ENSDCDG00000028756	ENSDCDG00000028757	ENSDCDG00000028759	ENSDCDG00000028762	ENSDCDG00000028768	ENSDCDG00000028770	ENSDCDG00000028771	ENSDCDG00000028774	ENSDCDG00000028776
Atlantic herring	MODERN SPECIES	13	alg11 (ENSCHAG00000015425) #17	spp2 (ENSCHAG00000015538) #16	raph1b (ENSCHAG00000015556) #15	cab39l (ENSCHAG00000015647) #26	MCF2L (ENSCHAG00000015785) #25	ENSCHAG00000016052	tubgcp3 (ENSCHAG00000016064) #30	ATP11A (ENSCHAG00000016236) #31	sox1b (ENSCHAG00000018680) ##32	arhgef7b (ENSCHAG00000018756) #33	ENSCHAG00000020937	lipt1 (ENSCHAG00000021873)	rpl31 (ENSCHAG00000021878) #20	chst10 (ENSCHAG00000021911) #21	ENSCHAG00000021914	MAP4K4 (ENSCHAG00000021943) #22	ugt1b5 (ENSCHAG00000023384)	ENSCHAG00000023392	atp5pf (ENSCHAG00000023416)	jam2a (ENSCHAG00000023428)	mrpl39 (ENSCHAG00000023440)	ENSCHAG00000023503	ENSCHAG00000023522	ENSCHAG00000023527	bcor (ENSCHAG00000023536)	mid1ip1b (ENSCHAG00000023555)	tspan7b (ENSCHAG00000023556)	ENSCHAG00000023573	xk (ENSCHAG00000002432)	GRPR (ENSCHAG00000002488)	noxo1b (ENSCHAG00000002840)
Clupeiformes	ANCESTRAL SPECIES	319										ENSGT00390000006356	ENSGT00960000186941	ENSGT00940000158977	ENSGT00940000167197	ENSGT00940000154295	ENSGT00940000175639	ENSGT00940000155063.c.a.b #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b.e	ENSGT01090000259985.b.a.a.a	ENSGT00970000198121	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000178189	ENSGT00940000158231.l	ENSGT00980000202316
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000007933	ENSCHAG00000007914	ENSCHAG00000007882	ENSCHAG00000007814	ENSCHAG00000007796	ENSCHAG00000007776	GOLT1B (ENSCHAG00000007742)	ENSCHAG00000007735	ENSCHAG00000007728	ENSCHAG00000007716	cnot11 (ENSCHAG00000007676)	ENSCHAG00000007656	TBC1D8 (ENSCHAG00000007575)	ENSCHAG00000007535	PDCL3 (ENSCHAG00000007508)	ENSCHAG00000004621 #22	ENSCHAG00000003969	ENSCHAG00000003871	ENSCHAG00000003840	ENSCHAG00000003813	ENSCHAG00000003744	ENSCHAG00000002146	ENSCHAG00000002107	wdr4 (ENSCHAG00000002048)	ENSCHAG00000001997	ENSCHAG00000001973	ENSCHAG00000001936	ENSCHAG00000001922	pdxka (ENSCHAG00000001811)	ENSCHAG00000001723	ENSCHAG00000001706
Denticle herring	MODERN SPECIES	2	ENSDCDG00000004821	psmb4 (ENSDCDG00000004826)	ENSDCDG00000004835	gatad1 (ENSDCDG00000004843)	lrrc14b (ENSDCDG00000004849)	uqcrb (ENSDCDG00000004855)	mterf3 (ENSDCDG00000004862)	PTDSS1 (ENSDCDG00000004892)	nup153 (ENSDCDG00000005142)	rbm24a (ENSDCDG00000005153)	cap2 (ENSDCDG00000005174)	cnot11 (ENSDCDG00000005383)	ENSDCDG00000005388	PDCL3 (ENSDCDG00000005396)	ENSDCDG00000005400	ENSDCDG00000005455 #22	ENSDCDG00000011029	ENSDCDG00000011058	ENSDCDG00000011090	ENSDCDG00000011121	ENSDCDG00000011137	ENSDCDG00000011150	ENSDCDG00000011163	ENSDCDG00000011170	ENSDCDG00000011340	ENSDCDG00000012799	ENSDCDG00000012806	tpm3 (ENSDCDG00000012884)	arhgef1a (ENSDCDG00000013560)	ENSDCDG00000013663	ggt1a (ENSDCDG00000013683)
Otophysi	ANCESTRAL SPECIES	341																ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b.e	ENSGT01090000259985.b.a.a.a	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978	ENSGT00940000158231.l	ENSGT00390000016499
Cyprinoidei	ANCESTRAL SPECIES	235										ENSGT01030000234859	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000154389.a.r.a.a	ENSGT00940000158406	ENSGT00390000011295.a.l.b	ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	770								ENSGT00950000183092.a.d.b	ENSGT00940000159439.a.c	ENSGT00940000156963.a.a	ENSGT01030000234859.c	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000154389.a.r.a.a	ENSGT00940000158406.y	ENSGT00940000155063.c.a.c #22	ENSGT01090000259985.b.b.b.a.a.a
Goldfish	MODERN SPECIES	27							ENSCARG00000064726	stac3 (ENSCARG00000064704)	kif5aa (ENSCARG00000061667)	map3k12 (ENSCARG00000060481)	ENSCARG00000060430	SLC5A7 (ENSCARG00000060301)	ENSCARG00000060068	ENSCARG00000060039	il10rb (ENSCARG00000059996)	ENSCARG00000048942 #22	ENSCARG00000048362	ENSCARG00000048344	ENSCARG00000048332	ENSCARG00000048318	ihha (ENSCARG00000048285)	mitd1 (ENSCARG00000048258)	ENSCARG00000048229	creg2 (ENSCARG00000048190)	MGAT4A (ENSCARG00000047479)	coa5 (ENSCARG00000047421)	si:dkey-4e7.3 (ENSCARG00000047390)	inpp4aa (ENSCARG00000045636)	ENSCARG00000045515	MFSD9 (ENSCARG00000045502)	tmem182a (ENSCARG00000045483)
Cyprininae_a	ANCESTRAL SPECIES	643										ENSGT00940000156963.a.a	ENSGT01030000234859.c	ENSGT00690000101915.i.a	ENSGT00950000183078.a	ENSGT00940000154389.a.r.a.a	ENSGT00940000158406.y	ENSGT00940000155063.c.a.c #22	ENSGT01090000259985.b.b.b.a.a.a
Common carp reference	MODERN SPECIES	41	ENSCCRG00000058595	ENSCCRG00000018729	ENSCCRG00000046669	ENSCCRG00000067204	ENSCCRG00000027701	ENSCCRG00000022944	ENSCCRG00000057367	ENSCCRG00000032536	ENSCCRG00000061282	ENSCCRG00000061497	ENSCCRG00000026533	ENSCCRG00000030939	ENSCCRG00000035630	ENSCCRG00000052914	ENSCCRG00000030886	ENSCCRG00000039479 #22	ENSCCRG00000006462	ENSCCRG00000060471
Golden-line barbel	MODERN SPECIES	676									ENSSGRG00000019538	ENSSGRG00000019537	ENSSGRG00000019536	SLC5A7 (ENSSGRG00000019535)	ENSSGRG00000019143	ENSSGRG00000019091	il10rb (ENSSGRG00000019085)	ENSSGRG00000007943 #22	ENSSGRG00000007665	ENSSGRG00000007440	ENSSGRG00000007426	ENSSGRG00000007423
Cyprininae	ANCESTRAL SPECIES	530	ENSGT00940000155773.b.bb	ENSGT00940000161094.i.a	ENSGT01080000258228	ENSGT00940000159439.a.d	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00530000063509.B	ENSGT00940000155232.t.a.b.a	ENSGT00940000166809	ENSGT00940000155232.t.b.b	ENSGT00390000011821	ENSGT01080000257462.a.b.a.b.b.a	ENSGT00940000158406.z.a	ENSGT00390000011295.a.l.b	ENSGT00940000155063.c.a.d #22	ENSGT00940000174098
Cyprininae_a	ANCESTRAL SPECIES	432	ENSGT00940000155773.b.bb	ENSGT00940000161094.i.a	ENSGT01080000258228	ENSGT00940000159439.a.d	ENSGT00940000154129.hd.f	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00530000063509.B	ENSGT00940000155232.t.a.b.a	ENSGT00940000166809	ENSGT00940000155232.t.b.b	ENSGT00390000011821	ENSGT01080000257462.a.b.a.b.b.a	ENSGT00940000158406.z.a	ENSGT00390000011295.a.l.b	ENSGT00940000155063.c.a.d #22	ENSGT00940000174098	ENSGT01090000260030.a.b.a.b.b.a.b.a.a.a.a.a.a.a.a.a.b.b.a.b.a.a.a
Common carp reference	MODERN SPECIES	46	aaas (ENSCCRG00000017006)	plbd2 (ENSCCRG00000001615)	ENSCCRG00000002354	ENSCCRG00000070832	ENSCCRG00000002365	ENSCCRG00000002370	lims2 (ENSCCRG00000002391)	ENSCCRG00000069729	ENSCCRG00000069076	ENSCCRG00000081244	il10rb (ENSCCRG00000064517)	ENSCCRG00000081802	ENSCCRG00000081593	il10rb (ENSCCRG00000052839)	hycc2 (ENSCCRG00000034675)	ENSCCRG00000034783 #22	ENSCCRG00000035781	ENSCCRG00000020302	ENSCCRG00000004223	ENSCCRG00000080594	ENSCCRG00000041836	ENSCCRG00000082350	ENSCCRG00000067736	ENSCCRG00000062566	ENSCCRG00000052930	ENSCCRG00000072119	ENSCCRG00000066098	ENSCCRG00000058148	ENSCCRG00000061468	ENSCCRG00000020500	ENSCCRG00000065076
Golden-line barbel	MODERN SPECIES	1026																ENSSGRG00000024703 #22	ENSSGRG00000024536	ENSSGRG00000024534	ENSSGRG00000024516	ENSSGRG00000024515	ENSSGRG00000024513	ENSSGRG00000024511	ENSSGRG00000024509	ENSSGRG00000024508
Goldfish	MODERN SPECIES	49	ENSCARG00000002440	cldn10b (ENSCARG00000002433)	ENSCARG00000002430	ENSCARG00000002386	ENSCARG00000002365	ENSCARG00000002361	ENSCARG00000002356	lims2 (ENSCARG00000002009)	RANBP2 (ENSCARG00000001830)	ENSCARG00000001784	ENSCARG00000001777	il10rb (ENSCARG00000001744)	ENSCARG00000001732	ENSCARG00000001729	hycc2 (ENSCARG00000066955)	ENSCARG00000064206 #22	sp5a (ENSCARG00000063937)	GAD1 (ENSCARG00000060480)	tlk1a (ENSCARG00000058411)	ITGA6 (ENSCARG00000056600)	dlx2a (ENSCARG00000056463)	dlx1a (ENSCARG00000056451)	hat1 (ENSCARG00000056171)	dync1i2a (ENSCARG00000055508)	ENSCARG00000055334	RAPGEF4 (ENSCARG00000054818)	MAP3K20 (ENSCARG00000054704)	cdca7a (ENSCARG00000054678)	sp3a (ENSCARG00000054660)	sp9 (ENSCARG00000054640)	CIR1 (ENSCARG00000054627)
Zebrafish	MODERN SPECIES	24	map3k12 (ENSDARG00000103651)	aaas (ENSDARG00000102274)	ENSDARG00000114697	plbd2 (ENSDARG00000114245)	ENSDARG00000099598	ENSDARG00000105042	cldn10b (ENSDARG00000104528)	ENSDARG00000103337	ENSDARG00000100150	SLC5A7 (ENSDARG00000102336)	ENSDARG00000110024	lims2 (ENSDARG00000014976)	RANBP2 (ENSDARG00000093125)	il10rb (ENSDARG00000078042)	hycc2 (ENSDARG00000101696)	MAP4K4 (ENSDARG00000098670) #22	ENSDARG00000100461
Characiphysae	ANCESTRAL SPECIES	107														ENSGT00940000155131	ENSGT01000000214434.B.a.a.b	ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b.e	ENSGT01090000259985.b.a.a.a	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00510000048847	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b	ENSGT00940000154014.b.b	ENSGT00390000005550	ENSGT00390000005581.b
Characiphysae_b	ANCESTRAL SPECIES	98														ENSGT00940000155131	ENSGT01000000214434.B.a.a.b	ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT01090000259985.b.a.a.b.e	ENSGT01090000259985.b.a.a.a	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978.i	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Characoidei	ANCESTRAL SPECIES	111																ENSGT00940000155063.c.a #22	ENSGT01090000259985.b.b.b.a.a.a	ENSGT01090000259985.b.b.b.a.b	ENSGT00970000197394	ENSGT01090000259985.b.a.a.a	ENSGT00510000051617	ENSGT00940000158406	ENSGT00940000158231.k	ENSGT00940000157314.B	ENSGT00510000048978.i	ENSGT00940000158231.l	ENSGT00390000016499	ENSGT00940000158493	ENSGT00390000004145.b	ENSGT00390000016484	ENSGT00940000155466.e.b
Red-bellied piranha	MODERN SPECIES	548																ENSPNAG00000024116 #22	ENSPNAG00000003809	ENSPNAG00000005667	ENSPNAG00000024177	ENSPNAG00000024211	ENSPNAG00000024248
Mexicana tetra	MODERN SPECIES	94															ENSAMXG00000035238	ENSAMXG00000017125 #22
Electric eel	MODERN SPECIES	102														TMEM50B (ENSEEEG00000003602)	ENSEEEG00000002000	ENSEEEG00000001771 #22	ENSEEEG00000001739	ENSEEEG00000001737	ENSEEEG00000001736	ENSEEEG00000001735	ENSEEEG00000001734	ENSEEEG00000001733	ENSEEEG00000001731	ENSEEEG00000001730	ENSEEEG00000001729	crfb4 (ENSEEEG00000001728)	ENSEEEG00000001726	ENSEEEG00000001724	ENSEEEG00000001723	ENSEEEG00000001720	tyw5 (ENSEEEG00000001710)
Channel catfish	MODERN SPECIES	25	ppp1r1c (ENSIPUG00000005526)	PDE1A (ENSIPUG00000005500)	ENSIPUG00000005475	dusp19 (ENSIPUG00000005462)	nckap1 (ENSIPUG00000005237)	frzb (ENSIPUG00000005189)	ENSIPUG00000005172	rpl31 (ENSIPUG00000005147) #20	cnot11 (ENSIPUG00000005134)	ENSIPUG00000005115	lcp1 (ENSIPUG00000005013)	itm2b (ENSIPUG00000004947)	ENSIPUG00000004892	Tmem50b (ENSIPUG00000004855)	ENSIPUG00000004808	ENSIPUG00000004742 #22	ENSIPUG00000004713	Il1rl2 (ENSIPUG00000004684)	ENSIPUG00000004672	ENSIPUG00000004631	ifngr2 (ENSIPUG00000004590)	ENSIPUG00000004574	ENSIPUG00000004550	Il10rb (ENSIPUG00000004532)	ENSIPUG00000004517	ENSIPUG00000004478	ENSIPUG00000004454	ENSIPUG00000004449	tyw5 (ENSIPUG00000004423)	c6h2orf47 (ENSIPUG00000004416)	pgap1 (ENSIPUG00000004293)
Otomorpha	ANCESTRAL SPECIES	665														ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22
Otophysi	ANCESTRAL SPECIES	505														ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000175812	ENSGT00390000006290	ENSGT00940000165888.f	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.a	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00950000182803.B.d.b	ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22
Channel catfish	MODERN SPECIES	18	ENSIPUG00000012948	ENSIPUG00000012909	pcdh8 (ENSIPUG00000012901)	pcdh8 (ENSIPUG00000012893)	LECT1 (ENSIPUG00000012864)	sugt1 (ENSIPUG00000012837)	ENSIPUG00000012789	ednrba (ENSIPUG00000012775)	MID1 (ENSIPUG00000012759)	arhgap6 (ENSIPUG00000012678)	msl3 (ENSIPUG00000012531)	ENSIPUG00000012420	prps2 (ENSIPUG00000012248)	chst10 (ENSIPUG00000012220) #21	lonrf2 (ENSIPUG00000012192)	MAP4K4 (ENSIPUG00000011853) #22	ccdc81 (ENSIPUG00000011797)	PRSS23 (ENSIPUG00000011778)	tmem39a-a (ENSIPUG00000011735)	ildr1a (ENSIPUG00000011675)	ildr2 (ENSIPUG00000011641)	ENSIPUG00000011576	ENSIPUG00000011542	ENSIPUG00000011515	ENSIPUG00000011490	dusp27 (ENSIPUG00000011465)	pou2f1 (ENSIPUG00000011393)	cd247 (ENSIPUG00000011307)	creg1 (ENSIPUG00000011270)	ENSIPUG00000011231	ENSIPUG00000011157
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000175812	ENSGT00390000006290	ENSGT00940000165888.f	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.a	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00950000182803.B.d.b	ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22	ENSGT00940000165237.b.b	ENSGT00940000178309	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000161024.d	ENSGT00390000006347.b	ENSGT00940000155401.v	ENSGT00940000155075.a.a.b	ENSGT00940000156564.b	ENSGT00390000008490	ENSGT00940000156445.p	ENSGT00940000160159	ENSGT00510000047027.c.a
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000163871.a.d.c	ENSGT00390000006290	ENSGT00940000165888.f	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.a	ENSGT00940000155821.c.b	ENSGT00940000153904.a.h	ENSGT00950000182965.b	ENSGT00950000183035.a.b.b	ENSGT00950000182803.B.d.b	ENSGT00940000157128 #21	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22	ENSGT00940000165237.b.b	ENSGT00940000178309	ENSGT01100000263563.c.a.b	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000161024.d	ENSGT00390000006347.b	ENSGT00940000155401.v	ENSGT00940000156564.b	ENSGT00390000008490	ENSGT00940000156445.p	ENSGT00940000160159	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a
Red-bellied piranha	MODERN SPECIES	164	ENSPNAG00000016344	retsatl (ENSPNAG00000016329)	CXorf38 (ENSPNAG00000016240)	ENSPNAG00000016231	PCDH8 (ENSPNAG00000016218)	CNMD (ENSPNAG00000016211)	sugt1 (ENSPNAG00000003409)	ENSPNAG00000016161	ednrba (ENSPNAG00000016141)	MID1 (ENSPNAG00000016092)	ARHGAP6 (ENSPNAG00000016069)	MSL3 (ENSPNAG00000016028)	ENSPNAG00000015948	chst10 (ENSPNAG00000015885) #21	ENSPNAG00000015847	MAP4K4 (ENSPNAG00000015824) #22	ENSPNAG00000004815	ENSPNAG00000015423	cckbra (ENSPNAG00000015413)
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000033746	ENSAMXG00000026008	ENSAMXG00000026007	ENSAMXG00000005283	ENSAMXG00000037151	ENSAMXG00000026006	VANGL1 (ENSAMXG00000005275)	CASQ2 (ENSAMXG00000038552)	poglut1 (ENSAMXG00000040520)	timmdc1 (ENSAMXG00000043134)	zgc:172295 (ENSAMXG00000005230)	zgc:64002 (ENSAMXG00000043311)	ENSAMXG00000029524	chst10 (ENSAMXG00000033225) #21	ENSAMXG00000005176	MAP4K4 (ENSAMXG00000005146) #22	ENSAMXG00000030058	ENSAMXG00000035162	ENSAMXG00000031145	cckbra (ENSAMXG00000008203)	ENSAMXG00000038840	NALF1 (ENSAMXG00000039067)	lig4 (ENSAMXG00000008192)	irs2a (ENSAMXG00000025890)	RAB20 (ENSAMXG00000032962)	CARS2 (ENSAMXG00000008172)	ING1 (ENSAMXG00000042640)	UBE2A (ENSAMXG00000033516)	ankrd10a (ENSAMXG00000041639)	ENSAMXG00000032880	ENSAMXG00000036367
Electric eel	MODERN SPECIES	175	zgc:153935 (ENSEEEG00000018939)	ENSEEEG00000018938	pcdh8 (ENSEEEG00000018936)	PCDH8 (ENSEEEG00000018929)	CNMD (ENSEEEG00000018928)	sugt1 (ENSEEEG00000018926)	ENSEEEG00000018924	ednrba (ENSEEEG00000018922)	MID1 (ENSEEEG00000018906)	ARHGAP6 (ENSEEEG00000018903)	MSL3 (ENSEEEG00000018898)	ENSEEEG00000018882	PRPS2 (ENSEEEG00000018863)	chst10 (ENSEEEG00000018858) #21	ENSEEEG00000018857	ENSEEEG00000012258 #22	ENSEEEG00000011956	ENSEEEG00000011955	cckbra (ENSEEEG00000011954)	NALF1 (ENSEEEG00000011952)	lig4 (ENSEEEG00000011951)	irs2a (ENSEEEG00000011950)	RAB20 (ENSEEEG00000011949)	CARS2 (ENSEEEG00000011938)	ING1 (ENSEEEG00000011937)	ENSEEEG00000011932	ankrd10a (ENSEEEG00000011931)	ENSEEEG00000011927	ENSEEEG00000011926	cryaa (ENSEEEG00000011917)	cbsa (ENSEEEG00000011913)
Cyprinoidei	ANCESTRAL SPECIES	147														ENSGT01100000263512.a.a.a.b.a.a	ENSGT00440000033329.b.a.a	ENSGT00940000155063.c.b #22	ENSGT00940000157358 #35	ENSGT00970000198226	ENSGT00940000154706.rb.b	ENSGT00390000005844.a.b	ENSGT00440000034932	ENSGT00940000160529	ENSGT00940000165650.b	ENSGT01060000249224.a	ENSGT00390000004643	ENSGT00940000179752	ENSGT00950000182907.a.b.b.a.c	ENSGT00940000155598.a	ENSGT00390000017018.b	ENSGT00390000011365.b.w.a	ENSGT00390000005218
Cyprininae	ANCESTRAL SPECIES	1185															ENSGT00440000033329.b.a.a.a	ENSGT00940000155063.c.b #22	ENSGT01090000260082.d.a.b.s.b #24
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	796														ENSGT01100000263512.a.a.a.b.a.a	ENSGT00440000033329.b.a.a.b	ENSGT00940000155063.c.b.a #22	ENSGT01090000260082.d.a.b.s.b #24
Golden-line barbel	MODERN SPECIES	1087													pus7 (ENSSGRG00000037284)	ednrba (ENSSGRG00000037273)	ENSSGRG00000037271	MAP4K4 (ENSSGRG00000028837) #22
Common carp reference	MODERN SPECIES	22	rpl24 (ENSCCRG00000082332)	ENSCCRG00000059608	ENSCCRG00000069831	ENSCCRG00000022172	ENSCCRG00000071229	ENSCCRG00000009584	ENSCCRG00000081556	ENSCCRG00000068564	ENSCCRG00000059685 #21	ENSCCRG00000040866	ENSCCRG00000049719	ENSCCRG00000075744	ENSCCRG00000063311	ENSCCRG00000082660	ENSCCRG00000039673	ENSCCRG00000063228 #22	ENSCCRG00000024724 #24	ENSCCRG00000059538	ENSCCRG00000072518	ENSCCRG00000039798	ENSCCRG00000068845	ENSCCRG00000068901	ENSCCRG00000034967	poglut1 (ENSCCRG00000057234)	ENSCCRG00000035914	zgc:172295 (ENSCCRG00000066794)	ENSCCRG00000035945	ENSCCRG00000035917	ENSCCRG00000061673	ENSCCRG00000036582	ENSCCRG00000074214
Cyprininae_a	ANCESTRAL SPECIES	461															ENSGT00440000033329.b.a.a.a	ENSGT00940000155063.c.b.b #22	ENSGT00940000159316.v.a	ENSGT01090000260082.d.a.b.s.a #24	ENSGT00390000009178	ENSGT00940000164246.C.d.b	ENSGT00940000164480.a.b.a	ENSGT00390000012496.a.c	ENSGT00390000019377.b.e.b	ENSGT00940000158283.g	ENSGT00390000013817.a.a	ENSGT01000000214434.B.a.a.a.b	ENSGT00390000011708.a.p	ENSGT00550000074981.f	ENSGT00980000198599.e.a	ENSGT00940000162067.e	ENSGT00390000006915.c.c.a.d
Common carp reference	MODERN SPECIES	27	ENSCCRG00000034956	pwp2h (ENSCCRG00000034888)	ENSCCRG00000032237	zgc:172295 (ENSCCRG00000060184)	ENSCCRG00000035141	poglut1 (ENSCCRG00000034984)	ENSCCRG00000034681	ENSCCRG00000034427	ENSCCRG00000082187	ENSCCRG00000070647	ENSCCRG00000024283	ENSCCRG00000070025 #24	ENSCCRG00000043337	ENSCCRG00000079166	ENSCCRG00000039653	ENSCCRG00000081028 #22	PSIP1 (ENSCCRG00000062862)	bnc2 (ENSCCRG00000056219)	CNTLN (ENSCCRG00000071812)	sh3gl2a (ENSCCRG00000018054)	ENSCCRG00000018048	ENSCCRG00000018046	trmo (ENSCCRG00000018039)	ENSCCRG00000058756	anp32b (ENSCCRG00000065775)	coro2aa (ENSCCRG00000017420)	uso1 (ENSCCRG00000080512)	g3bp2a (ENSCCRG00000077865)	ints12 (ENSCCRG00000060317)	ARHGEF38 (ENSCCRG00000007531)	ppa2 (ENSCCRG00000079658)
Golden-line barbel	MODERN SPECIES	107																ENSSGRG00000051662 #22	ENSSGRG00000051584	ENSSGRG00000050058 #24	ENSSGRG00000049937	ENSSGRG00000049936	ENSSGRG00000049935	ENSSGRG00000049933	ENSSGRG00000049932	poglut1 (ENSSGRG00000049685)	timmdc1 (ENSSGRG00000049684)	zgc:172295 (ENSSGRG00000049683)	pwp2h (ENSSGRG00000049672)	ENSSGRG00000049670	ENSSGRG00000049668	RAB9A (ENSSGRG00000049666)	RAB9A (ENSSGRG00000049664)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Clupeiformes	ANCESTRAL SPECIES	46	ENSGT01030000235214	ENSGT00950000183072.b.b.b	ENSGT00530000063779.A.e.b	ENSGT00940000167474	ENSGT00940000156219.e.b	ENSGT01030000234515.a.a.b.i	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000158859.f	ENSGT00940000157954	ENSGT00390000007741.b	ENSGT00940000159106	ENSGT00390000000227	ENSGT00950000183075.a.b	ENSGT00940000155063.d #22	ENSGT00940000160673.g.b	ENSGT00940000155526.i.a	ENSGT00940000159309	ENSGT00940000159683	ENSGT00390000012728	ENSGT00950000183197.b.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	19								bbs5 (ENSDCDG00000003160)	klhl41a (ENSDCDG00000003385)	fastkd1 (ENSDCDG00000003397) ##13	ENSDCDG00000003427	phgdh (ENSDCDG00000003453)	KLHL23 (ENSDCDG00000003633)	mettl5 (ENSDCDG00000003657)	ubr3 (ENSDCDG00000003663)	ENSDCDG00000003675 #22	sp5a (ENSDCDG00000003689)	GAD1 (ENSDCDG00000003695)	TLK1 (ENSDCDG00000003785)	ENSDCDG00000003795	ENSDCDG00000003799	mettl8 (ENSDCDG00000003813)	dcaf17 (ENSDCDG00000003820)	cybrd1 (ENSDCDG00000003832)	si:dkey-69o16.5 (ENSDCDG00000003834)	ihha (ENSDCDG00000003839)	sp5a (ENSDCDG00000003850)	GAD1 (ENSDCDG00000003857)	TLK1 (ENSDCDG00000003872)	ENSDCDG00000004074	mettl8 (ENSDCDG00000004079)
Denticle herring	MODERN SPECIES	218																ENSDCDG00000007616 #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Electric eel	MODERN SPECIES	770												ENSEEEG00000022535	GALNT11 (ENSEEEG00000022519)	GPR158 (ENSEEEG00000022515)	anxa13 (ENSEEEG00000022512)	ENSEEEG00000022510 #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155063.d #22
Goldfish	MODERN SPECIES	49	ENSCARG00000003503	ACVR1C (ENSCARG00000003603)	CYTIP (ENSCARG00000003615)	GALNT5 (ENSCARG00000003619)	ENSCARG00000003620	nr4a2a (ENSCARG00000003626)	KCNJ3 (ENSCARG00000003633)	GALNT13 (ENSCARG00000003657)	rprma (ENSCARG00000003699)	prpf40a (ENSCARG00000004156)	FMNL2 (ENSCARG00000009251)	MYLK (ENSCARG00000009433)	KALRN (ENSCARG00000010710)	ENSCARG00000011001	ubr3 (ENSCARG00000011047)	ENSCARG00000011686 #22	kif5aa (ENSCARG00000011716)	ENSCARG00000011761	crfb4 (ENSCARG00000011783)	crfb2 (ENSCARG00000011788)	crfb1 (ENSCARG00000011800)	ENSCARG00000011808	ENSCARG00000011812	ENSCARG00000011816