Chordata	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Sarcopterygii	ANCESTRAL SPECIES	729															ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00510000046803.b.b #24
Tetrapoda	ANCESTRAL SPECIES	107									ENSGT00940000159540 #33	ENSGT00940000160952 #32	ENSGT00940000162178 #31	ENSGT00940000160453 #29	ENSGT00390000018821 #27	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000159033 #19	ENSGT00940000156904 #18	ENSGT00510000049460 #17	ENSGT00390000005023.a #15	ENSGT00940000168928	ENSGT00390000017213.A #11	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a #9	ENSGT00390000017343 #8	ENSGT00940000168539	ENSGT00940000156036 #7
Amniota	ANCESTRAL SPECIES	53	ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000180930	ENSGT00390000018821 #27	ENSGT00940000161390 #28
Mammalia	ANCESTRAL SPECIES	20	ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37	ENSGT00390000007725.A.a
Theria	ANCESTRAL SPECIES		ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Glires	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Marmotini	ANCESTRAL SPECIES	43	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b.k #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Alpin marmot	MODERN SPECIES	69	USP5 (ENSMMMG00000016921) #7	CDCA3 (ENSMMMG00000016946) #8	GNB3 (ENSMMMG00000016949) #9	P3H3 (ENSMMMG00000016960) #10	GPR162 (ENSMMMG00000016980) #11	CD4 (ENSMMMG00000016990) #12	LAG3 (ENSMMMG00000017001) #13	ENSMMMG00000017097 #14	MLF2 (ENSMMMG00000017103) #15	COPS7A (ENSMMMG00000017113) #16	PIANP (ENSMMMG00000017119) #17	ZNF384 (ENSMMMG00000017132) #18	ING4 (ENSMMMG00000017397) #19	ACRBP (ENSMMMG00000017414) #20	LPAR5 (ENSMMMG00000017458) #21	CHD4 (ENSMMMG00000017466) #22	NOP2 (ENSMMMG00000017537) #23	IFFO1 (ENSMMMG00000017549) #24	ENSMMMG00000017572 #25	NCAPD2 (ENSMMMG00000017813) #26	MRPL51 (ENSMMMG00000017860) #27	VAMP1 (ENSMMMG00000017864) #28	TAPBPL (ENSMMMG00000017876) #29	CD27 (ENSMMMG00000017884) #30	LTBR (ENSMMMG00000017889) #31	SCNN1A (ENSMMMG00000017899) #32	TNFRSF1A (ENSMMMG00000017946) #33	PLEKHG6 (ENSMMMG00000017961) #34	CD9 (ENSMMMG00000017985) #35	VWF (ENSMMMG00000017987) #36	ANO2 (ENSMMMG00000018106) #37
Marmotini_b	ANCESTRAL SPECIES	111	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b.k #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Arctic ground squirrel	MODERN SPECIES	287	CDCA3 (ENSUPAG00010012251) #8	GNB3 (ENSUPAG00010012262) #9	P3H3 (ENSUPAG00010012273) #10	GPR162 (ENSUPAG00010012307) #11	CD4 (ENSUPAG00010012311) #12	LAG3 (ENSUPAG00010012322) #13	ENSUPAG00010012331 #14	MLF2 (ENSUPAG00010012341) #15	ENSUPAG00010012348	COPS7A (ENSUPAG00010012353) #16	PIANP (ENSUPAG00010012361) #17	ZNF384 (ENSUPAG00010012380) #18	ING4 (ENSUPAG00010012637) #19	ACRBP (ENSUPAG00010012647) #20	LPAR5 (ENSUPAG00010012680) #21	CHD4 (ENSUPAG00010012693) #22	NOP2 (ENSUPAG00010012834) #23	IFFO1 (ENSUPAG00010012871) #24	ENSUPAG00010012916 ##25	NCAPD2 (ENSUPAG00010012965) #26	MRPL51 (ENSUPAG00010013007) #27	VAMP1 (ENSUPAG00010013015) #28	TAPBPL (ENSUPAG00010013043) #29	CD27 (ENSUPAG00010013052) #30	LTBR (ENSUPAG00010013063) #31	SCNN1A (ENSUPAG00010013073) #32	TNFRSF1A (ENSUPAG00010013146) #33	PLEKHG6 (ENSUPAG00010013161) #34	CD9 (ENSUPAG00010013184) #35	VWF (ENSUPAG00010013201) #36	ANO2 (ENSUPAG00010013264) #37
Squirrel	MODERN SPECIES	309	USP5 (ENSSTOG00000015589) #7	CDCA3 (ENSSTOG00000023573) #8	GNB3 (ENSSTOG00000015586) #9	P3H3 (ENSSTOG00000015582) #10	GPR162 (ENSSTOG00000020091) #11	CD4 (ENSSTOG00000027178) #12	LAG3 (ENSSTOG00000015581) #13	PTMS (ENSSTOG00000034819) #14	ENSSTOG00000009908 #15	COPS7A (ENSSTOG00000027250) #16	PIANP (ENSSTOG00000028660) #17	ZNF384 (ENSSTOG00000009902) #18	ING4 (ENSSTOG00000009890) #19	ENSSTOG00000009882 #20	LPAR5 (ENSSTOG00000026737) #21	CHD4 (ENSSTOG00000007601) #22	ENSSTOG00000033133	IFFO1 (ENSSTOG00000007566) #24	ENSSTOG00000007538 #25	NCAPD2 (ENSSTOG00000007493) #26	MRPL51 (ENSSTOG00000007484) #27	VAMP1 (ENSSTOG00000007482) #28	TAPBPL (ENSSTOG00000007459) #29	CD27 (ENSSTOG00000007440) #30	LTBR (ENSSTOG00000013322) #31	SCNN1A (ENSSTOG00000013304) #32	TNFRSF1A (ENSSTOG00000010063) #33	PLEKHG6 (ENSSTOG00000010044) #34	ENSSTOG00000001348 #35	VWF (ENSSTOG00000015861) #36	ANO2 (ENSSTOG00000015852) #37
Eurasian red squirrel	MODERN SPECIES	14	USP5 (ENSSVLG00005019715) #7	ENSSVLG00005019585 #8	GNB3 (ENSSVLG00005019432) #9	P3H3 (ENSSVLG00005019312) #10	GPR162 (ENSSVLG00005019129) #11	CD4 (ENSSVLG00005018976) #12	LAG3 (ENSSVLG00005018831) #13	ENSSVLG00005018711	MLF2 (ENSSVLG00005018671) #15	ENSSVLG00005018640 #16	PIANP (ENSSVLG00005018592) #17	ENSSVLG00005018564 #18	ING4 (ENSSVLG00005018357) #19	ACRBP (ENSSVLG00005018087) #20	LPAR5 (ENSSVLG00005018041) #21	CHD4 (ENSSVLG00005015376) #22	NOP2 (ENSSVLG00005014954) #23	ENSSVLG00005014899 #24	ENSSVLG00005014703 #25	ENSSVLG00005014610	MRPL51 (ENSSVLG00005014541) #27	VAMP1 (ENSSVLG00005014405) #28	TAPBPL (ENSSVLG00005014372) #29	CD27 (ENSSVLG00005014318) #30	LTBR (ENSSVLG00005014074) #31	ENSSVLG00005013962	SCNN1A (ENSSVLG00005013781) #32	TNFRSF1A (ENSSVLG00005013664) #33	PLEKHG6 (ENSSVLG00005013449) #34	CD9 (ENSSVLG00005013052) #35	VWF (ENSSVLG00005012648) #36
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Naked mole-rat female	MODERN SPECIES	24	GNB3 (ENSHGLG00000005327) #9	P3H3 (ENSHGLG00000004948) #10	GPR162 (ENSHGLG00000004580) #11	CD4 (ENSHGLG00000004194) #12	LAG3 (ENSHGLG00000004095) #13	PTMS (ENSHGLG00000038669) #14	MLF2 (ENSHGLG00000003883) #15	COPS7A (ENSHGLG00000032684) #16	PIANP (ENSHGLG00000003689) #17	ZNF384 (ENSHGLG00000003572) #18	ENSHGLG00000039857	Ing4 (ENSHGLG00000003447) #19	ACRBP (ENSHGLG00000003358) #20	ENSHGLG00000047116	LPAR5 (ENSHGLG00000033434) #21	CHD4 (ENSHGLG00000003093) #22	NOP2 (ENSHGLG00000042932) #23	IFFO1 (ENSHGLG00000002934) #24	GAPDH (ENSHGLG00000002856) #25	ENSHGLG00000036344	NCAPD2 (ENSHGLG00000001934) #26	MRPL51 (ENSHGLG00000050005) #27	ENSHGLG00000001867 #28	TAPBPL (ENSHGLG00000001831) #29	CD27 (ENSHGLG00000046681) #30	LTBR (ENSHGLG00000032405) #31	SCNN1A (ENSHGLG00000001735) #32	TNFRSF1A (ENSHGLG00000001689) #33	PLEKHG6 (ENSHGLG00000001657) #34	CD9 (ENSHGLG00000001625) #35	VWF (ENSHGLG00000001451) #36
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Guinea pig	MODERN SPECIES	107	TPI1 (ENSCPOG00000012344)	USP5 (ENSCPOG00000012336) #7	CDCA3 (ENSCPOG00000012334) #8	GNB3 (ENSCPOG00000025068) #9	P3H3 (ENSCPOG00000012330) #10	GPR162 (ENSCPOG00000038691) #11	ENSCPOG00000012324 #12	LAG3 (ENSCPOG00000012321) #13	PTMS (ENSCPOG00000021676) #14	MLF2 (ENSCPOG00000035372) #15	COPS7A (ENSCPOG00000000315) #16	PIANP (ENSCPOG00000000349) #17	ZNF384 (ENSCPOG00000012313) #18	ING4 (ENSCPOG00000012311) #19	ACRBP (ENSCPOG00000012300) #20	CHD4 (ENSCPOG00000008504) #22	NOP2 (ENSCPOG00000020690) #23	IFFO1 (ENSCPOG00000001041) #24	Gapdh (ENSCPOG00000026350) #25	NCAPD2 (ENSCPOG00000008480) #26	MRPL51 (ENSCPOG00000008478) #27	VAMP1 (ENSCPOG00000008473) #28	TAPBPL (ENSCPOG00000008460) #29	CD27 (ENSCPOG00000008449) #30	LTBR (ENSCPOG00000035613) #31	SCNN1A (ENSCPOG00000006185) #32	TNFRSF1A (ENSCPOG00000031352) #33	PLEKHG6 (ENSCPOG00000000576) #34	TEX52 (ENSCPOG00000008276)	FOXM1 (ENSCPOG00000015373)	RHNO1 (ENSCPOG00000035546)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Degu	MODERN SPECIES	219	CDCA3 (ENSODEG00000003383) #8	GNB3 (ENSODEG00000003424) #9	P3H3 (ENSODEG00000003441) #10	GPR162 (ENSODEG00000003518) #11	ENSODEG00000018791	ENSODEG00000002251	LAG3 (ENSODEG00000002278) #13	ENSODEG00000002310 #14	MLF2 (ENSODEG00000002383) #15	COPS7A (ENSODEG00000002432) #16	ENSODEG00000002475	PIANP (ENSODEG00000002502) #17	ZNF384 (ENSODEG00000002585) #18	ING4 (ENSODEG00000002865) #19	ACRBP (ENSODEG00000002969) #20	CHD4 (ENSODEG00000003114) #22	ENSODEG00000003567	ENSODEG00000003579 #24	ENSODEG00000004114 #25	NCAPD2 (ENSODEG00000004156) #26	MRPL51 (ENSODEG00000004435) #27	VAMP1 (ENSODEG00000004453) #28	TAPBPL (ENSODEG00000004477) #29	CD27 (ENSODEG00000004529) #30	LTBR (ENSODEG00000004616) #31	SCNN1A (ENSODEG00000004767) #32	TNFRSF1A (ENSODEG00000004861) #33	PLEKHG6 (ENSODEG00000005186) #34	CD9 (ENSODEG00000005241) #35	VWF (ENSODEG00000002617) #36	ANO2 (ENSODEG00000002927) #37
Long-tailed chinchilla	MODERN SPECIES	120	USP5 (ENSCLAG00000015551) #7	CDCA3 (ENSCLAG00000013619) #8	GNB3 (ENSCLAG00000014669) #9	P3H3 (ENSCLAG00000012569) #10	GPR162 (ENSCLAG00000015020) #11	CD4 (ENSCLAG00000016197) #12	LAG3 (ENSCLAG00000014680) #13	PTMS (ENSCLAG00000016337) #14	MLF2 (ENSCLAG00000013739) #15	COPS7A (ENSCLAG00000014244) #16	PIANP (ENSCLAG00000016394) #17	ZNF384 (ENSCLAG00000015550) #18	ING4 (ENSCLAG00000014519) #19	ENSCLAG00000014500 #20	LPAR5 (ENSCLAG00000014166) #21	CHD4 (ENSCLAG00000012244) #22	NOP2 (ENSCLAG00000014440) #23	IFFO1 (ENSCLAG00000014944) #24	GAPDH (ENSCLAG00000013783) #25	NCAPD2 (ENSCLAG00000013118) #26	MRPL51 (ENSCLAG00000011881) #27	VAMP1 (ENSCLAG00000012860) #28	TAPBPL (ENSCLAG00000016184) #29	CD27 (ENSCLAG00000016154) #30	LTBR (ENSCLAG00000013106) #31	SCNN1A (ENSCLAG00000015244) #32	TNFRSF1A (ENSCLAG00000016084) #33	PLEKHG6 (ENSCLAG00000015229) #34	CD9 (ENSCLAG00000013477) #35	VWF (ENSCLAG00000014671) #36	ANO2 (ENSCLAG00000015450) #37
Rodentia_B	ANCESTRAL SPECIES	35	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Kangaroo rat	MODERN SPECIES	388	Lrrc23 (ENSDORG00000008956)	Tpi1 (ENSDORG00000013175)	Usp5 (ENSDORG00000013174) #7	Cdca3 (ENSDORG00000013173) #8	Gnb3 (ENSDORG00000016512) #9	P3h3 (ENSDORG00000011727) #10	Gpr162 (ENSDORG00000019800) #11	Lag3 (ENSDORG00000001547) #13	ENSDORG00000024725	ENSDORG00000015958	ENSDORG00000025741 #16	Pianp (ENSDORG00000024889) #17	Zfp384 (ENSDORG00000015720) #18	Ing4 (ENSDORG00000015718) #19	Lpar5 (ENSDORG00000026918) #21	Chd4 (ENSDORG00000001847) #22	ENSDORG00000027336 ##25	Ncapd2 (ENSDORG00000015992) #26	Mrpl51 (ENSDORG00000028160) #27	Vamp1 (ENSDORG00000015989) #28	Scnn1a (ENSDORG00000003134) #32	Plekhg6 (ENSDORG00000006748) #34	Cd9 (ENSDORG00000013724) #35	Vwf (ENSDORG00000026775) #36	Ano2 (ENSDORG00000025195) #37	Ntf3 (ENSDORG00000029285)	Kcna1 (ENSDORG00000012602)	Kcna6 (ENSDORG00000005125)	Ndufa9 (ENSDORG00000001278)	Akap3 (ENSDORG00000015855)	ENSDORG00000030145
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Lesser Egyptian jerboa	MODERN SPECIES	158	Usp5 (ENSJJAG00000022609) #7	Cdca3 (ENSJJAG00000000372) #8	Gnb3 (ENSJJAG00000000612) #9	P3h3 (ENSJJAG00000002354) #10	Gpr162 (ENSJJAG00000004130) #11	Cd4 (ENSJJAG00000006130) #12	Lag3 (ENSJJAG00000007735) #13	ENSJJAG00000008935 #14	Mlf2 (ENSJJAG00000009196) #15	Cops7a (ENSJJAG00000010387) #16	Pianp (ENSJJAG00000000549) #17	Zfp384 (ENSJJAG00000003875) #18	Ing4 (ENSJJAG00000009788) #19	ENSJJAG00000010370 #20	Lpar5 (ENSJJAG00000010456) #21	Chd4 (ENSJJAG00000012394) #22	ENSJJAG00000015505	Iffo1 (ENSJJAG00000015968) #24	ENSJJAG00000017186 #25	Ncapd2 (ENSJJAG00000017993) #26	Mrpl51 (ENSJJAG00000018962) #27	ENSJJAG00000019185	Tapbpl (ENSJJAG00000019548) #29	Cd27 (ENSJJAG00000019993) #30	Ltbr (ENSJJAG00000020376) #31	Scnn1a (ENSJJAG00000021122) #32	Plekhg6 (ENSJJAG00000022183) #34	Cd9 (ENSJJAG00000022710) #35	Vwf (ENSJJAG00000023254) #36	Ano2 (ENSJJAG00000004730) #37	Ntf3 (ENSJJAG00000004637)
Muroidea	ANCESTRAL SPECIES	24	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1885	Tpi1 (ENSNGAG00000017109)	Usp5 (ENSNGAG00000011453) #7	Cdca3 (ENSNGAG00000016633) #8	Gnb3 (ENSNGAG00000023501) #9	P3h3 (ENSNGAG00000015076) #10	Gpr162 (ENSNGAG00000002840) #11	ENSNGAG00000022963 #12	Lag3 (ENSNGAG00000009790) #13	ENSNGAG00000021065 #14	Mlf2 (ENSNGAG00000016666) #15	Cops7a (ENSNGAG00000022873) #16	Pianp (ENSNGAG00000013944) #17	Zfp384 (ENSNGAG00000011316) #18	Ing4 (ENSNGAG00000016704) #19	Acrbp (ENSNGAG00000022774) #20	Chd4 (ENSNGAG00000016920) #22	Nop2 (ENSNGAG00000019010) #23	Iffo1 (ENSNGAG00000013363) #24	ENSNGAG00000013476 #25	Ncapd2 (ENSNGAG00000021912) #26	Mrpl51 (ENSNGAG00000022754) #27	Vamp1 (ENSNGAG00000011610) #28	Tapbpl (ENSNGAG00000023020) #29	Cd27 (ENSNGAG00000019654) #30	Ltbr (ENSNGAG00000022402) #31	Scnn1a (ENSNGAG00000019351) #32	Tnfrsf1a (ENSNGAG00000019085) #33	Plekhg6 (ENSNGAG00000011808) #34	ENSNGAG00000022639	Cd9 (ENSNGAG00000014189) #35	Vwf (ENSNGAG00000022403) #36
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Rat	MODERN SPECIES	14	Gnb3 (ENSRNOG00000015541) #9	P3h3 (ENSRNOG00000071218) #10	Gpr162 (ENSRNOG00000016143) #11	ENSRNOG00000071219 #12	Lag3 (ENSRNOG00000021334) #13	Ptms (ENSRNOG00000060098)	AC115420.4 (ENSRNOG00000060308)	Mlf2 (ENSRNOG00000016589) #15	Cops7a (ENSRNOG00000016778) #16	Pianp (ENSRNOG00000017052) #17	Zfp384 (ENSRNOG00000017066) #18	ENSRNOG00000066393	Acrbp (ENSRNOG00000017399) #20	Ing4 (ENSRNOG00000023363) #19	Lpar5 (ENSRNOG00000021401) #21	Chd4 (ENSRNOG00000018309) #22	Nop2 (ENSRNOG00000018453) #23	Iffo1 (ENSRNOG00000018533) #24	LOC108351137 (ENSRNOG00000018630) ##25	Ncapd2 (ENSRNOG00000055300) #26	Mrpl51 (ENSRNOG00000019165) #27	Vamp1 (ENSRNOG00000019219) #28	Cd27 (ENSRNOG00000027466) #30	Tuba3b (ENSRNOG00000031707)	Ltbr (ENSRNOG00000019264) #31	Scnn1a (ENSRNOG00000019368) #32	Tnfrsf1a (ENSRNOG00000031312) #33	Plekhg6 (ENSRNOG00000019528) #34	ENSRNOG00000064217	Cd9 (ENSRNOG00000019556) #35	Vwf (ENSRNOG00000019689) #36
Mus	ANCESTRAL SPECIES	12	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Shrew mouse	MODERN SPECIES	11	Usp5 (MGP_PahariEiJ_G0022614) #7	Cdca3 (MGP_PahariEiJ_G0022615) #8	Gnb3 (MGP_PahariEiJ_G0022616) #9	P3h3 (MGP_PahariEiJ_G0022617) #10	Gpr162 (MGP_PahariEiJ_G0022618) #11	MGP_PahariEiJ_G0022619 #12	Lag3 (MGP_PahariEiJ_G0022620) #13	MGP_PahariEiJ_G0022621	MGP_PahariEiJ_G0022622	Cops7a (MGP_PahariEiJ_G0022623) #16	Pianp (MGP_PahariEiJ_G0022624) #17	Zfp384 (MGP_PahariEiJ_G0022625) #18	Ing4 (MGP_PahariEiJ_G0022626) #19	Acrbp (MGP_PahariEiJ_G0022627) #20	Lpar5 (MGP_PahariEiJ_G0022628) #21	Chd4 (MGP_PahariEiJ_G0022629) #22	MGP_PahariEiJ_G0022630	Iffo1 (MGP_PahariEiJ_G0022631) #24	MGP_PahariEiJ_G0022632 ##25	Ncapd2 (MGP_PahariEiJ_G0022633) #26	Mrpl51 (MGP_PahariEiJ_G0022634) #27	Vamp1 (MGP_PahariEiJ_G0022635) #28	Tapbpl (MGP_PahariEiJ_G0022636) #29	Cd27 (MGP_PahariEiJ_G0022637) #30	Ltbr (MGP_PahariEiJ_G0022638) #31	Scnn1a (MGP_PahariEiJ_G0022639) #32	Tnfrsf1a (MGP_PahariEiJ_G0022640) #33	Plekhg6 (MGP_PahariEiJ_G0022641) #34	Cd9 (MGP_PahariEiJ_G0022642) #35	Vwf (MGP_PahariEiJ_G0022643) #36	Ano2 (MGP_PahariEiJ_G0022644) #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Ryukyu mouse	MODERN SPECIES	15	Tpi1 (MGP_CAROLIEiJ_G0028853)	Usp5 (MGP_CAROLIEiJ_G0028854) #7	Cdca3 (MGP_CAROLIEiJ_G0028855) #8	Gnb3 (MGP_CAROLIEiJ_G0028856) #9	Gpr162 (MGP_CAROLIEiJ_G0028858) #11	Cd4 (MGP_CAROLIEiJ_G0028859) #12	MGP_CAROLIEiJ_G0028860 #13	MGP_CAROLIEiJ_G0028861	MGP_CAROLIEiJ_G0028862	Cops7a (MGP_CAROLIEiJ_G0028863) #16	Pianp (MGP_CAROLIEiJ_G0028864) #17	Zfp384 (MGP_CAROLIEiJ_G0028865) #18	Ing4 (MGP_CAROLIEiJ_G0028866) #19	MGP_CAROLIEiJ_G0028867 #20	Lpar5 (MGP_CAROLIEiJ_G0028868) #21	MGP_CAROLIEiJ_G0028869 #22	Iffo1 (MGP_CAROLIEiJ_G0028870) #24	MGP_CAROLIEiJ_G0028872	MGP_CAROLIEiJ_G0028874 #28	Tapbpl (MGP_CAROLIEiJ_G0028875) #29	Cd27 (MGP_CAROLIEiJ_G0028876) #30	MGP_CAROLIEiJ_G0028877	MGP_CAROLIEiJ_G0028878 #31	Scnn1a (MGP_CAROLIEiJ_G0028879) #32	Tnfrsf1a (MGP_CAROLIEiJ_G0028880) #33	MGP_CAROLIEiJ_G0028881 #35	MGP_CAROLIEiJ_G0028882 #36	MGP_CAROLIEiJ_G0028883 #37	Ntf3 (MGP_CAROLIEiJ_G0028884)	Kcna5 (MGP_CAROLIEiJ_G0028885)	Kcna1 (MGP_CAROLIEiJ_G0028886)
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000156036 #7	ENSGT00390000017343.g #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904.e.a #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a.b.a.b ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00950000182825.B	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000156036 #7	ENSGT00390000017343.g #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00940000168330	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904.e.a #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a.b.a.b ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00950000182825.B	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
spretus	MODERN SPECIES	15	Usp5 (MGP_SPRETEiJ_G0029896) #7	Cdca3 (MGP_SPRETEiJ_G0029897) #8	Gnb3 (MGP_SPRETEiJ_G0029898) #9	P3h3 (MGP_SPRETEiJ_G0029899) #10	Gpr162 (MGP_SPRETEiJ_G0029900) #11	Cd4 (MGP_SPRETEiJ_G0029901) #12	Lag3 (MGP_SPRETEiJ_G0029902) #13	MGP_SPRETEiJ_G0029903	MGP_SPRETEiJ_G0029904	Cops7a (MGP_SPRETEiJ_G0029905) #16	Pianp (MGP_SPRETEiJ_G0029906) #17	MGP_SPRETEiJ_G0029907 #18	Ing4 (MGP_SPRETEiJ_G0029908) #19	Acrbp (MGP_SPRETEiJ_G0029909) #20	Lpar5 (MGP_SPRETEiJ_G0029910) #21	Chd4 (MGP_SPRETEiJ_G0029911) #22	MGP_SPRETEiJ_G0029912	Iffo1 (MGP_SPRETEiJ_G0029913) #24	Ncapd2 (MGP_SPRETEiJ_G0029915) #26	Mrpl51 (MGP_SPRETEiJ_G0029916) #27	Vamp1 (MGP_SPRETEiJ_G0029917) #28	Tapbpl (MGP_SPRETEiJ_G0029918) #29	Cd27 (MGP_SPRETEiJ_G0029919) #30	MGP_SPRETEiJ_G0029920	Ltbr (MGP_SPRETEiJ_G0029921) #31	Scnn1a (MGP_SPRETEiJ_G0029922) #32	Tnfrsf1a (MGP_SPRETEiJ_G0029923) #33	Plekhg6 (MGP_SPRETEiJ_G0029924) #34	Cd9 (MGP_SPRETEiJ_G0029925) #35	Vwf (MGP_SPRETEiJ_G0029926) #36	Ano2 (MGP_SPRETEiJ_G0029927) #37
Steppe mouse	MODERN SPECIES	2453										Cops7a (ENSMSIG00000005376) #16	Pianp (ENSMSIG00000005454) #17	Zfp384 (ENSMSIG00000005490) #18	Ing4 (ENSMSIG00000005976) #19	Acrbp (ENSMSIG00000006066) #20	Lpar5 (ENSMSIG00000006314) #21	Chd4 (ENSMSIG00000006341) #22	Nop2 (ENSMSIG00000006620) #23	Iffo1 (ENSMSIG00000006668) #24	ENSMSIG00000006759 ##25	Ncapd2 (ENSMSIG00000006811) #26	Mrpl51 (ENSMSIG00000006876) #27	Vamp1 (ENSMSIG00000006906) #28	Tapbpl (ENSMSIG00000006978) #29	Cd27 (ENSMSIG00000007002) #30	ENSMSIG00000007122	Ltbr (ENSMSIG00000007137) #31	Scnn1a (ENSMSIG00000007175) #32	Tnfrsf1a (ENSMSIG00000007222) #33	Plekhg6 (ENSMSIG00000007258) #34
Mouse	MODERN SPECIES	15	Usp5 (ENSMUSG00000038429) #7	Cdca3 (ENSMUSG00000023505) #8	Gnb3 (ENSMUSG00000023439) #9	P3h3 (ENSMUSG00000023191) #10	Gpr162 (ENSMUSG00000038390) #11	Cd4 (ENSMUSG00000023274) #12	Lag3 (ENSMUSG00000030124) #13	Ptms (ENSMUSG00000030122)	Mlf2 (ENSMUSG00000030120) #15	Cops7a (ENSMUSG00000030127) #16	Pianp (ENSMUSG00000030329) #17	Zfp384 (ENSMUSG00000038346) #18	Ing4 (ENSMUSG00000030330) #19	Acrbp (ENSMUSG00000072770) #20	Lpar5 (ENSMUSG00000067714) #21	Chd4 (ENSMUSG00000063870) #22	Nop2 (ENSMUSG00000038279) #23	Iffo1 (ENSMUSG00000038271) #24	Gapdh (ENSMUSG00000057666) ##25	Ncapd2 (ENSMUSG00000038252) #26	Mrpl51 (ENSMUSG00000030335) #27	Vamp1 (ENSMUSG00000030337) #28	Tapbpl (ENSMUSG00000038213) #29	Cd27 (ENSMUSG00000030336) #30	Tuba3a (ENSMUSG00000067702)	Ltbr (ENSMUSG00000030339) #31	Scnn1a (ENSMUSG00000030340) #32	Tnfrsf1a (ENSMUSG00000030341) #33	Plekhg6 (ENSMUSG00000038167) #34	Cd9 (ENSMUSG00000030342) #35	Vwf (ENSMUSG00000001930) #36
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00950000182825.B	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Golden Hamster	MODERN SPECIES	511																ENSMAUG00000000892 #22
Chinese hamster chok1gshd	MODERN SPECIES	289	ENSCGRG00001003405 #7	Cdca3 (ENSCGRG00001013882) #8	Gnb3 (ENSCGRG00001016439) #9	P3h3 (ENSCGRG00001000528) #10	Gpr162 (ENSCGRG00001003162) #11	Cd4 (ENSCGRG00001013261) #12	Lag3 (ENSCGRG00001022458) #13	Ptms (ENSCGRG00001001584)	Mlf2 (ENSCGRG00001010430) #15	Cops7a (ENSCGRG00001014256) #16	Pianp (ENSCGRG00001015100) #17	Zfp384 (ENSCGRG00001013065) #18	Ing4 (ENSCGRG00001016033) #19	Acrbp (ENSCGRG00001017982) #20	Lpar5 (ENSCGRG00001014775) #21	Chd4 (ENSCGRG00001020662) #22	Nop2 (ENSCGRG00001020970) #23	Iffo1 (ENSCGRG00001000162) #24	ENSCGRG00001006857 ##25	Ncapd2 (ENSCGRG00001002247) #26	ENSCGRG00001010566 #27	Vamp1 (ENSCGRG00001014055) #28	ENSCGRG00001020124 #29	Cd27 (ENSCGRG00001009970) #30	ENSCGRG00001013937	Ltbr (ENSCGRG00001015407) #31	Scnn1a (ENSCGRG00001020304) #32	Tnfrsf1a (ENSCGRG00001021062) #33	Plekhg6 (ENSCGRG00001021507) #34	ENSCGRG00001015575	Cd9 (ENSCGRG00001022703) #35
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Northern American deer mouse	MODERN SPECIES	16	Usp5 (ENSPEMG00000015362) #7	Cdca3 (ENSPEMG00000016358) #8	Gnb3 (ENSPEMG00000016368) #9	P3h3 (ENSPEMG00000011450) #10	Gpr162 (ENSPEMG00000017095) #11	ENSPEMG00000024347 #12	Lag3 (ENSPEMG00000018743) #13	ENSPEMG00000016593	Mlf2 (ENSPEMG00000013094) #15	Cops7a (ENSPEMG00000002860) #16	Pianp (ENSPEMG00000013120) #17	Zfp384 (ENSPEMG00000016282) #18	Ing4 (ENSPEMG00000018496) #19	Acrbp (ENSPEMG00000010165) #20	Lpar5 (ENSPEMG00000019056) #21	Chd4 (ENSPEMG00000010290) #22	Nop2 (ENSPEMG00000013138) #23	Iffo1 (ENSPEMG00000008539) #24	ENSPEMG00000001195 ##25	Ncapd2 (ENSPEMG00000016112) #26	Mrpl51 (ENSPEMG00000008667) #27	Vamp1 (ENSPEMG00000006934) #28	Tapbpl (ENSPEMG00000003668) #29	ENSPEMG00000028083	Cd27 (ENSPEMG00000012177) #30	ENSPEMG00000025965	Ltbr (ENSPEMG00000014957) #31	Scnn1a (ENSPEMG00000012010) #32	Tnfrsf1a (ENSPEMG00000009612) #33	Plekhg6 (ENSPEMG00000013888) #34	Cd9 (ENSPEMG00000008270) #35
Prairie vole	MODERN SPECIES	84	Usp5 (ENSMOCG00000002382) #7	Cdca3 (ENSMOCG00000008232) #8	Gnb3 (ENSMOCG00000019447) #9	P3h3 (ENSMOCG00000014085) #10	Gpr162 (ENSMOCG00000018395) #11	Cd4 (ENSMOCG00000007576) #12	Lag3 (ENSMOCG00000016856) #13	Ptms (ENSMOCG00000011411)	ENSMOCG00000000196 #15	Cops7a (ENSMOCG00000018184) #16	Pianp (ENSMOCG00000012046) #17	Zfp384 (ENSMOCG00000022768) #18	Ing4 (ENSMOCG00000010335) #19	Acrbp (ENSMOCG00000017657) #20	Lpar5 (ENSMOCG00000021762) #21	Chd4 (ENSMOCG00000020624) #22	Nop2 (ENSMOCG00000017237) #23	Iffo1 (ENSMOCG00000003850) #24	ENSMOCG00000000471 ##25	ENSMOCG00000000297 #26	Mrpl51 (ENSMOCG00000013685) #27	Vamp1 (ENSMOCG00000019201) #28	Tapbpl (ENSMOCG00000000244) #29	Cd27 (ENSMOCG00000017717) #30	Ltbr (ENSMOCG00000015975) #31	Scnn1a (ENSMOCG00000000794) #32	Tnfrsf1a (ENSMOCG00000013868) #33	Plekhg6 (ENSMOCG00000006971) #34	Cd9 (ENSMOCG00000022019) #35	Vwf (ENSMOCG00000005320) #36	Ano2 (ENSMOCG00000000380) #37
Lagomorpha	ANCESTRAL SPECIES	37	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Rabbit	MODERN SPECIES	19	TPI1 (ENSOCUG00000025649)	USP5 (ENSOCUG00000003582) #7	CDCA3 (ENSOCUG00000022434) #8	GNB3 (ENSOCUG00000012934) #9	P3H3 (ENSOCUG00000012916) #10	GPR162 (ENSOCUG00000030705) #11	ENSOCUG00000012911 #12	LAG3 (ENSOCUG00000011196) #13	ENSOCUG00000003750 #15	COPS7A (ENSOCUG00000011187) #16	PIANP (ENSOCUG00000003749) #17	ZNF384 (ENSOCUG00000003747) #18	ING4 (ENSOCUG00000003742) #19	ACRBP (ENSOCUG00000003737) #20	LPAR5 (ENSOCUG00000026551) #21	CHD4 (ENSOCUG00000008215) #22	NOP2 (ENSOCUG00000008203) #23	ENSOCUG00000008198 #24	ENSOCUG00000029891 #25	NCAPD2 (ENSOCUG00000008176) #26	MRPL51 (ENSOCUG00000008170) #27	VAMP1 (ENSOCUG00000021107) #28	TAPBPL (ENSOCUG00000008163) #29	CD27 (ENSOCUG00000008159) #30	LTBR (ENSOCUG00000001292) #31	SCNN1A (ENSOCUG00000010152) #32	TNFRSF1A (ENSOCUG00000010146) #33	PLEKHG6 (ENSOCUG00000010130) #34	ENSOCUG00000010123 #35	VWF (ENSOCUG00000006783) #36	ENSOCUG00000006775 #37
Pika	MODERN SPECIES	233	ENO2 (ENSOPRG00000003940)	LRRC23 (ENSOPRG00000003927)	SPSB2 (ENSOPRG00000003916)	TPI1 (ENSOPRG00000003895)	USP5 (ENSOPRG00000003849) #7	CDCA3 (ENSOPRG00000003837) #8	GNB3 (ENSOPRG00000003814) #9	P3H3 (ENSOPRG00000003768) #10	CD4 (ENSOPRG00000003747) #12	LAG3 (ENSOPRG00000003706) #13	PTMS (ENSOPRG00000003690) #14	MLF2 (ENSOPRG00000003657) #15	COPS7A (ENSOPRG00000003640) #16	ZNF384 (ENSOPRG00000003626) #18	ACRBP (ENSOPRG00000003592) #20	CHD4 (ENSOPRG00000003477) #22	NOP2 (ENSOPRG00000003412) #23
Tree shrew	MODERN SPECIES	397														ACRBP (ENSTBEG00000011975) #20	LPAR5 (ENSTBEG00000011959) #21	CHD4 (ENSTBEG00000011379) #22	ENSTBEG00000010989 #23
Primates	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a.f #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Bushbaby	MODERN SPECIES	219	ENSOGAG00000031254	USP5 (ENSOGAG00000010847) #7	CDCA3 (ENSOGAG00000032007) #8	GNB3 (ENSOGAG00000027119) #9	P3H3 (ENSOGAG00000003025) #10	GPR162 (ENSOGAG00000024660) #11	CD4 (ENSOGAG00000014692) #12	LAG3 (ENSOGAG00000033914) #13	ACRBP (ENSOGAG00000010040) #20	ENSOGAG00000005976 #15	COPS7A (ENSOGAG00000005973) #16	PIANP (ENSOGAG00000034013) #17	ZNF384 (ENSOGAG00000010052) #18	ING4 (ENSOGAG00000010044) #19	LPAR5 (ENSOGAG00000010037) #21	CHD4 (ENSOGAG00000010031) #22	ENSOGAG00000010028	IFFO1 (ENSOGAG00000010024) #24	NCAPD2 (ENSOGAG00000010019) #26	MRPL51 (ENSOGAG00000031255) #27	VAMP1 (ENSOGAG00000012088) #28	TAPBPL (ENSOGAG00000012086) #29	CD27 (ENSOGAG00000012085) #30	LTBR (ENSOGAG00000025739) #31	SCNN1A (ENSOGAG00000012078) #32	TNFRSF1A (ENSOGAG00000012073) #33	PLEKHG6 (ENSOGAG00000012066) #34	ENSOGAG00000009557 #35	VWF (ENSOGAG00000005948) #36	ANO2 (ENSOGAG00000005943) #37	NTF3 (ENSOGAG00000009496)
Lemuriformes	ANCESTRAL SPECIES	41	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a.f #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.b.f.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Mouse lemur	MODERN SPECIES	29	SPSB2 (ENSMICG00000001765)	USP5 (ENSMICG00000001749) #7	CDCA3 (ENSMICG00000001744) #8	GNB3 (ENSMICG00000015148) #9	P3H3 (ENSMICG00000042131) #10	GPR162 (ENSMICG00000001963) #11	CD4 (ENSMICG00000027649) #12	LAG3 (ENSMICG00000044236) #13	PTMS (ENSMICG00000036709) #14	MLF2 (ENSMICG00000048017) #15	COPS7A (ENSMICG00000013661) #16	PIANP (ENSMICG00000026350) #17	ZNF384 (ENSMICG00000006636) #18	ING4 (ENSMICG00000006626) #19	ACRBP (ENSMICG00000006616) #20	CHD4 (ENSMICG00000006588) #22	NOP2 (ENSMICG00000006570) #23	IFFO1 (ENSMICG00000006558) #24	ENSMICG00000006546 #25	NCAPD2 (ENSMICG00000006519) #26	MRPL51 (ENSMICG00000027914) #27	VAMP1 (ENSMICG00000006507) #28	TAPBPL (ENSMICG00000006498) #29	CD27 (ENSMICG00000043982) #30	ENSMICG00000030640 #31	SCNN1A (ENSMICG00000009254) #32	TNFRSF1A (ENSMICG00000009249) #33	PLEKHG6 (ENSMICG00000009241) #34	CD9 (ENSMICG00000009235) #35	VWF (ENSMICG00000004782) #36	ANO2 (ENSMICG00000004767) #37
Lemuriformes_a	ANCESTRAL SPECIES	33	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a.f #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.b.f.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Greater bamboo lemur	MODERN SPECIES	605	TPI1 (ENSPSMG00000015802)	USP5 (ENSPSMG00000015879) #7	CDCA3 (ENSPSMG00000015938) #8	GNB3 (ENSPSMG00000016055) #9	P3H3 (ENSPSMG00000016162) #10	GPR162 (ENSPSMG00000016191) #11	CD4 (ENSPSMG00000016207) #12	LAG3 (ENSPSMG00000016218) #13	PTMS (ENSPSMG00000016228) #14	MLF2 (ENSPSMG00000016257) #15	COPS7A (ENSPSMG00000016330) #16	PIANP (ENSPSMG00000016352) #17	ZNF384 (ENSPSMG00000016435) #18	ACRBP (ENSPSMG00000016571) #20	LPAR5 (ENSPSMG00000016626) #21	CHD4 (ENSPSMG00000016974) #22	NOP2 (ENSPSMG00000017335) #23	IFFO1 (ENSPSMG00000017410) #24	ENSPSMG00000017469 #26	MRPL51 (ENSPSMG00000017485) #27	VAMP1 (ENSPSMG00000017542) #28	ENSPSMG00000017569 #29	CD27 (ENSPSMG00000017574) #30	LTBR (ENSPSMG00000017627) #31	SCNN1A (ENSPSMG00000017657) #32	TNFRSF1A (ENSPSMG00000017682) #33	PLEKHG6 (ENSPSMG00000017750) #34	CD9 (ENSPSMG00000017856) #35	VWF (ENSPSMG00000018040) #36	ANO2 (ENSPSMG00000018090) #37	NTF3 (ENSPSMG00000018107)
Coquerels sifaka	MODERN SPECIES	128	ENSPCOG00000028236	USP5 (ENSPCOG00000023120) #7	CDCA3 (ENSPCOG00000012783) #8	GNB3 (ENSPCOG00000028837) #9	P3H3 (ENSPCOG00000024751) #10	GPR162 (ENSPCOG00000018277) #11	CD4 (ENSPCOG00000015849) #12	LAG3 (ENSPCOG00000026047) #13	ENSPCOG00000019129	MLF2 (ENSPCOG00000021173) #15	COPS7A (ENSPCOG00000023849) #16	PIANP (ENSPCOG00000015290) #17	ZNF384 (ENSPCOG00000024423) #18	ING4 (ENSPCOG00000011355) #19	ACRBP (ENSPCOG00000018439) #20	CHD4 (ENSPCOG00000018635) #22	ENSPCOG00000002562	IFFO1 (ENSPCOG00000019348) #24	ENSPCOG00000015049 #25	NCAPD2 (ENSPCOG00000022291) #26	ENSPCOG00000024470 #27	VAMP1 (ENSPCOG00000024868) #28	TAPBPL (ENSPCOG00000022121) #29	CD27 (ENSPCOG00000025005) #30	LTBR (ENSPCOG00000003892) #31	SCNN1A (ENSPCOG00000010597) #32	TNFRSF1A (ENSPCOG00000026430) #33	PLEKHG6 (ENSPCOG00000025731) #34	CD9 (ENSPCOG00000018215) #35	VWF (ENSPCOG00000025072) #36	ANO2 (ENSPCOG00000016390) #37
Haplorrhini	ANCESTRAL SPECIES	39	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Tarsier	MODERN SPECIES	2399																CHD4 (ENSTSYG00000006069) #22	NOP2 (ENSTSYG00000006030) #23	ENSTSYG00000031266 #24
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Platyrrhini	ANCESTRAL SPECIES	46	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.d.b.a #25	ENSGT00940000153566.a.g #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Cebidae	ANCESTRAL SPECIES	41	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.d.b.a #25	ENSGT00940000153566.a.g #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Cebidae_a	ANCESTRAL SPECIES	94										ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.d.b.a #25	ENSGT00940000153566.a.g #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Capuchin	MODERN SPECIES	187	PARP11 (ENSCCAG00000033980)	ENSCCAG00000034059	CCND2 (ENSCCAG00000032243)	TIGAR (ENSCCAG00000022810)	FGF23 (ENSCCAG00000022167)	FGF6 (ENSCCAG00000033191)	C12orf4 (ENSCCAG00000020852)	RAD51AP1 (ENSCCAG00000032881)	DYRK4 (ENSCCAG00000030043)	COPS7A (ENSCCAG00000028279) #16	ENSCCAG00000031566	PIANP (ENSCCAG00000029227) #17	ZNF384 (ENSCCAG00000032088) #18	ING4 (ENSCCAG00000027875) #19	ACRBP (ENSCCAG00000019365) #20	CHD4 (ENSCCAG00000009686) #22	ENSCCAG00000037712	IFFO1 (ENSCCAG00000031460) #24	ENSCCAG00000036787 #25	ENSCCAG00000037395 #26	MRPL51 (ENSCCAG00000030846) #27	VAMP1 (ENSCCAG00000030242) #28	ENSCCAG00000030371	TAPBPL (ENSCCAG00000019333) #29	CD27 (ENSCCAG00000032627) #30	LTBR (ENSCCAG00000037636) #31	SCNN1A (ENSCCAG00000024002) #32	TNFRSF1A (ENSCCAG00000036380) #33	PLEKHG6 (ENSCCAG00000024072) #34	CD9 (ENSCCAG00000035576) #35	VWF (ENSCCAG00000029371) #36
Bolivian squirrel monkey	MODERN SPECIES	197								ENSSBOG00000004230	ENSSBOG00000024104	COPS7A (ENSSBOG00000016629) #16	PIANP (ENSSBOG00000022052) #17	ZNF384 (ENSSBOG00000020182) #18	ING4 (ENSSBOG00000016889) #19	ACRBP (ENSSBOG00000020904) #20	LPAR5 (ENSSBOG00000016658) #21	CHD4 (ENSSBOG00000020782) #22	NOP2 (ENSSBOG00000034622) #23	IFFO1 (ENSSBOG00000020913) #24	ENSSBOG00000030439 #25	ENSSBOG00000029006 #26	MRPL51 (ENSSBOG00000028416) #27	VAMP1 (ENSSBOG00000017216) #28	TAPBPL (ENSSBOG00000025031) #29	ENSSBOG00000019610	CD27 (ENSSBOG00000023847) #30	LTBR (ENSSBOG00000031167) #31	SCNN1A (ENSSBOG00000028462) #32	TNFRSF1A (ENSSBOG00000029812) #33	PLEKHG6 (ENSSBOG00000029167) #34	CD9 (ENSSBOG00000021142) #35	VWF (ENSSBOG00000029305) #36
Marmoset	MODERN SPECIES	21	USP5 (ENSCJAG00000007431) #7	CDCA3 (ENSCJAG00000007508) #8	GNB3 (ENSCJAG00000007512) #9	P3H3 (ENSCJAG00000007528) #10	GPR162 (ENSCJAG00000044634) #11	CD4 (ENSCJAG00000007635) #12	LAG3 (ENSCJAG00000007657) #13	ENSCJAG00000038843 #14	MLF2 (ENSCJAG00000007681) #15	COPS7A (ENSCJAG00000007835) #16	PIANP (ENSCJAG00000007910) #17	ZNF384 (ENSCJAG00000007944) #18	ING4 (ENSCJAG00000008004) #19	ACRBP (ENSCJAG00000008090) #20	LPAR5 (ENSCJAG00000083060) #21	CHD4 (ENSCJAG00000008114) #22	NOP2 (ENSCJAG00000008179) #23	IFFO1 (ENSCJAG00000037676) #24	ENSCJAG00000008234 #25	ENSCJAG00000084549 #27	NCAPD2 (ENSCJAG00000007561) #26	ENSCJAG00000065290 #27	ENSCJAG00000046151	VAMP1 (ENSCJAG00000044254) #28	TAPBPL (ENSCJAG00000000722) #29	CD27 (ENSCJAG00000000719) #30	LTBR (ENSCJAG00000000706) #31	SCNN1A (ENSCJAG00000000689) #32	TNFRSF1A (ENSCJAG00000000674) #33	PLEKHG6 (ENSCJAG00000000666) #34	CD9 (ENSCJAG00000000659) #35
Mas night monkey	MODERN SPECIES	274	P3H3 (ENSANAG00000027222) #10	GPR162 (ENSANAG00000035754) #11	CD4 (ENSANAG00000031728) #12	LAG3 (ENSANAG00000027143) #13	PTMS (ENSANAG00000025029) #14	MLF2 (ENSANAG00000023951) #15	ENSANAG00000034921	ENSANAG00000036949	ENSANAG00000035023	ENSANAG00000032919	COPS7A (ENSANAG00000037741) #16	PIANP (ENSANAG00000026580) #17	ZNF384 (ENSANAG00000032088) #18	ING4 (ENSANAG00000018382) #19	ACRBP (ENSANAG00000032730) #20	CHD4 (ENSANAG00000035685) #22	ENSANAG00000026027	IFFO1 (ENSANAG00000016258) #24	ENSANAG00000036575 #25	NCAPD2 (ENSANAG00000036586) #26	ENSANAG00000021671 #27	ENSANAG00000018367	VAMP1 (ENSANAG00000037847) #28	TAPBPL (ENSANAG00000017857) #29	CD27 (ENSANAG00000036800) #30
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Hominidae	ANCESTRAL SPECIES	4	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00510000046986.n.a.b
Pan	ANCESTRAL SPECIES	31	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00390000008496.eb	ENSGT00950000183030.m.b.b.m.b	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Chimpanzee	MODERN SPECIES	3	USP5 (ENSPTRG00000004594) #7	CDCA3 (ENSPTRG00000004593) #8	GNB3 (ENSPTRG00000004592) #9	P3H3 (ENSPTRG00000004591) #10	GPR162 (ENSPTRG00000038667) #11	CD4 (ENSPTRG00000004590) #12	LAG3 (ENSPTRG00000024384) #13	PTMS (ENSPTRG00000004588)	MLF2 (ENSPTRG00000004587) #15	COPS7A (ENSPTRG00000004586) #16	PIANP (ENSPTRG00000004585) #17	ZNF384 (ENSPTRG00000004584) #18	ING4 (ENSPTRG00000004583) #19	ACRBP (ENSPTRG00000004582) #20	LPAR5 (ENSPTRG00000004581) #21	CHD4 (ENSPTRG00000004580) #22	NOP2 (ENSPTRG00000004579)	IFFO1 (ENSPTRG00000004578) #24	GAPDH (ENSPTRG00000004577) #25	NCAPD2 (ENSPTRG00000004576) #26	MRPL51 (ENSPTRG00000004575) #27	ENSPTRG00000044427	VAMP1 (ENSPTRG00000004574) #28	ENSPTRG00000051882	TAPBPL (ENSPTRG00000004573) #29	CD27 (ENSPTRG00000029823) #30	ENSPTRG00000050411	ENSPTRG00000048966	LTBR (ENSPTRG00000004572) #31	SCNN1A (ENSPTRG00000004571) #32	TNFRSF1A (ENSPTRG00000004570) #33
Bonobo	MODERN SPECIES	3	USP5 (ENSPPAG00000037918) #7	CDCA3 (ENSPPAG00000036023) #8	GNB3 (ENSPPAG00000042920) #9	P3H3 (ENSPPAG00000036812) #10	GPR162 (ENSPPAG00000005842) #11	CD4 (ENSPPAG00000034703) #12	LAG3 (ENSPPAG00000026677) #13	ENSPPAG00000033598	MLF2 (ENSPPAG00000034825) #15	COPS7A (ENSPPAG00000022715) #16	PIANP (ENSPPAG00000028216) #17	ZNF384 (ENSPPAG00000043539) #18	ING4 (ENSPPAG00000035325) #19	ACRBP (ENSPPAG00000042742) #20	LPAR5 (ENSPPAG00000014365) #21	CHD4 (ENSPPAG00000029007) #22	ENSPPAG00000030215	IFFO1 (ENSPPAG00000037226) #24	ENSPPAG00000039909 #25	NCAPD2 (ENSPPAG00000041747) #26	MRPL51 (ENSPPAG00000040001) #27	ENSPPAG00000034755	VAMP1 (ENSPPAG00000034853) #28	ENSPPAG00000040975	TAPBPL (ENSPPAG00000039890) #29	CD27 (ENSPPAG00000036587) #30	ENSPPAG00000034129	ENSPPAG00000028653	LTBR (ENSPPAG00000037185) #31	ENSPPAG00000034540 #32	TNFRSF1A (ENSPPAG00000017841) #33
Human	MODERN SPECIES	3	USP5 (ENSG00000111667) #7	CDCA3 (ENSG00000111665) #8	GNB3 (ENSG00000111664) #9	P3H3 (ENSG00000110811) #10	GPR162 (ENSG00000250510) #11	CD4 (ENSG00000010610) #12	LAG3 (ENSG00000089692) #13	PTMS (ENSG00000159335) #14	MLF2 (ENSG00000089693) #15	COPS7A (ENSG00000111652) #16	PIANP (ENSG00000139200) #17	ZNF384 (ENSG00000126746) #18	ING4 (ENSG00000111653) #19	ACRBP (ENSG00000111644) #20	LPAR5 (ENSG00000184574) #21	CHD4 (ENSG00000111642) #22	NOP2 (ENSG00000111641) #23	IFFO1 (ENSG00000010295) #24	GAPDH (ENSG00000111640) #25	NCAPD2 (ENSG00000010292) #26	MRPL51 (ENSG00000111639) #27	VAMP1 (ENSG00000139190) #28	TAPBPL (ENSG00000139192) #29	CD27 (ENSG00000139193) #30	LTBR (ENSG00000111321) #31	SCNN1A (ENSG00000111319) #32	TNFRSF1A (ENSG00000067182) #33	PLEKHG6 (ENSG00000008323) #34	CD9 (ENSG00000010278) #35	VWF (ENSG00000110799) #36	ANO2 (ENSG00000047617) #37
Gorilla	MODERN SPECIES	3	USP5 (ENSGGOG00000002615) #7	CDCA3 (ENSGGOG00000002613) #8	GNB3 (ENSGGOG00000002609) #9	P3H3 (ENSGGOG00000002603) #10	GPR162 (ENSGGOG00000040285) #11	CD4 (ENSGGOG00000003230) #12	LAG3 (ENSGGOG00000003225) #13	ENSGGOG00000014593	MLF2 (ENSGGOG00000007930) #15	COPS7A (ENSGGOG00000009184) #16	PIANP (ENSGGOG00000016057) #17	ZNF384 (ENSGGOG00000016048) #18	ING4 (ENSGGOG00000016035) #19	ACRBP (ENSGGOG00000025663) #20	LPAR5 (ENSGGOG00000001937) #21	CHD4 (ENSGGOG00000001930) #22	NOP2 (ENSGGOG00000001926) #23	IFFO1 (ENSGGOG00000009558) #24	GAPDH (ENSGGOG00000009553) #25	NCAPD2 (ENSGGOG00000009536) #26	MRPL51 (ENSGGOG00000016199) #27	ENSGGOG00000041204	ENSGGOG00000004659	VAMP1 (ENSGGOG00000036332) #28	ENSGGOG00000041472	TAPBPL (ENSGGOG00000004655) #29	CD27 (ENSGGOG00000004650) #30	ENSGGOG00000022764	ENSGGOG00000024862	LTBR (ENSGGOG00000010848) #31	SCNN1A (ENSGGOG00000010834) #32
Orangutan	MODERN SPECIES	3	USP5 (ENSPPYG00000004206) #7	CDCA3 (ENSPPYG00000004205) #8	GNB3 (ENSPPYG00000004204) #9	P3H3 (ENSPPYG00000004203) #10	GPR162 (ENSPPYG00000038576) #11	CD4 (ENSPPYG00000004202) #12	LAG3 (ENSPPYG00000004201) #13	ENSPPYG00000041549	MLF2 (ENSPPYG00000004199) #15	COPS7A (ENSPPYG00000004198) #16	PIANP (ENSPPYG00000004197) #17	ZNF384 (ENSPPYG00000004196) #18	ING4 (ENSPPYG00000004195) #19	ACRBP (ENSPPYG00000004194) #20	LPAR5 (ENSPPYG00000004193) #21	CHD4 (ENSPPYG00000004192) #22	ENSPPYG00000004191	IFFO1 (ENSPPYG00000004190) #24	GAPDH (ENSPPYG00000004189) #25	NCAPD2 (ENSPPYG00000004188) #26	MRPL51 (ENSPPYG00000025846) #27	VAMP1 (ENSPPYG00000004187) #28	TAPBPL (ENSPPYG00000004186) #29	CD27 (ENSPPYG00000029486) #30	LTBR (ENSPPYG00000039662) #31	SCNN1A (ENSPPYG00000004184) #32	TNFRSF1A (ENSPPYG00000004183) #33	PLEKHG6 (ENSPPYG00000004182) #34	CD9 (ENSPPYG00000004181) #35	VWF (ENSPPYG00000004180) #36	ANO2 (ENSPPYG00000004179) #37
Gibbon	MODERN SPECIES	15	USP5 (ENSNLEG00000004763) #7	CDCA3 (ENSNLEG00000004752) #8	GNB3 (ENSNLEG00000004736) #9	P3H3 (ENSNLEG00000004705) #10	GPR162 (ENSNLEG00000004700) #11	CD4 (ENSNLEG00000004671) #12	ENSNLEG00000004668 #13	ENSNLEG00000004666	MLF2 (ENSNLEG00000004587) #15	COPS7A (ENSNLEG00000004510) #16	PIANP (ENSNLEG00000032075) #17	ZNF384 (ENSNLEG00000004506) #18	ING4 (ENSNLEG00000004431) #19	ACRBP (ENSNLEG00000004414) #20	LPAR5 (ENSNLEG00000004406) #21	CHD4 (ENSNLEG00000004330) #22	NOP2 (ENSNLEG00000004242) #23	IFFO1 (ENSNLEG00000004195) #24	GAPDH (ENSNLEG00000003825) #25	NCAPD2 (ENSNLEG00000003743) #26	MRPL51 (ENSNLEG00000033120) #27	VAMP1 (ENSNLEG00000003714) #28	ENSNLEG00000030784	TAPBPL (ENSNLEG00000003709) #29	ENSNLEG00000032099	CD27 (ENSNLEG00000003696) #30	ENSNLEG00000003663 #31	ENSNLEG00000035453 #32	TNFRSF1A (ENSNLEG00000034897) #33	PLEKHG6 (ENSNLEG00000003548) #34	CD9 (ENSNLEG00000003491) #35
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Rhinopithecus	ANCESTRAL SPECIES	54	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821.n #27	ENSGT00940000161390 #28	ENSGT01030000240266	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35
Golden snub-nosed monkey	MODERN SPECIES	2549	USP5 (ENSRROG00000043893) #7	CDCA3 (ENSRROG00000042250) #8	GNB3 (ENSRROG00000023776) #9	P3H3 (ENSRROG00000030746) #10	GPR162 (ENSRROG00000042378) #11	CD4 (ENSRROG00000028161) #12	LAG3 (ENSRROG00000030083) #13	ENSRROG00000044634	MLF2 (ENSRROG00000038823) #15	COPS7A (ENSRROG00000041726) #16	PIANP (ENSRROG00000034978) #17	ZNF384 (ENSRROG00000034990) #18	ING4 (ENSRROG00000040119) #19	ACRBP (ENSRROG00000036460) #20	LPAR5 (ENSRROG00000018849) #21	CHD4 (ENSRROG00000042446) #22	NOP2 (ENSRROG00000041019) #23	IFFO1 (ENSRROG00000039769) #24	ENSRROG00000030690 #25	NCAPD2 (ENSRROG00000037510) #26	ENSRROG00000033245 #27	VAMP1 (ENSRROG00000035855) #28	TAPBPL (ENSRROG00000045610) #29	ENSRROG00000033196	CD27 (ENSRROG00000030539) #30	LTBR (ENSRROG00000041807) #31	SCNN1A (ENSRROG00000044856) #32	TNFRSF1A (ENSRROG00000029169) #33	PLEKHG6 (ENSRROG00000041873) #34	CD9 (ENSRROG00000013322) #35	VWF (ENSRROG00000042864) #36
Black snub-nosed monkey	MODERN SPECIES	1066	CDCA3 (ENSRBIG00000041965) #8	GNB3 (ENSRBIG00000032871) #9	P3H3 (ENSRBIG00000034982) #10	GPR162 (ENSRBIG00000035479) #11	CD4 (ENSRBIG00000039046) #12	LAG3 (ENSRBIG00000034533) #13	PTMS (ENSRBIG00000042120) #14	MLF2 (ENSRBIG00000012695) #15	COPS7A (ENSRBIG00000034305) #16	ENSRBIG00000037587 #16	PIANP (ENSRBIG00000036733) #17	ZNF384 (ENSRBIG00000034371) #18	ING4 (ENSRBIG00000029015) #19	ACRBP (ENSRBIG00000029614) #20	LPAR5 (ENSRBIG00000015246) #21	CHD4 (ENSRBIG00000041491) #22
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Vervet Monkey	MODERN SPECIES	2	USP5 (ENSCSAG00000010215) #7	CDCA3 (ENSCSAG00000010224) #8	GNB3 (ENSCSAG00000010234) #9	P3H3 (ENSCSAG00000010242) #10	GPR162 (ENSCSAG00000010255) #11	CD4 (ENSCSAG00000010263) #12	LAG3 (ENSCSAG00000010305) #13	ENSCSAG00000010328 #14	MLF2 (ENSCSAG00000010338) #15	COPS7A (ENSCSAG00000010346) #16	PIANP (ENSCSAG00000010351) #17	ZNF384 (ENSCSAG00000010379) #18	ING4 (ENSCSAG00000010403) #19	ACRBP (ENSCSAG00000010413) #20	LPAR5 (ENSCSAG00000019222) #21	CHD4 (ENSCSAG00000010429) #22	NOP2 (ENSCSAG00000010484) #23	IFFO1 (ENSCSAG00000010518) #24	ENSCSAG00000010531 #25	NCAPD2 (ENSCSAG00000010550) #26	MRPL51 (ENSCSAG00000010565) #27	ENSCSAG00000010592 #28	TAPBPL (ENSCSAG00000010603) #29	CD27 (ENSCSAG00000010635) #30	LTBR (ENSCSAG00000010660) #31	SCNN1A (ENSCSAG00000010676) #32	TNFRSF1A (ENSCSAG00000010687) #33	PLEKHG6 (ENSCSAG00000010727) #34	CD9 (ENSCSAG00000010749) #35	VWF (ENSCSAG00000010786) #36	ANO2 (ENSCSAG00000010915) #37
Cercopithecinae_a	ANCESTRAL SPECIES	25	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34
Macaca	ANCESTRAL SPECIES	30	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35
Pig-tailed macaque	MODERN SPECIES	593	USP5 (ENSMNEG00000029869) #7	CDCA3 (ENSMNEG00000037981) #8	GNB3 (ENSMNEG00000036587) #9	P3H3 (ENSMNEG00000028584) #10	GPR162 (ENSMNEG00000041385) #11	CD4 (ENSMNEG00000043009) #12	LAG3 (ENSMNEG00000024032) #13	ENSMNEG00000033214	MLF2 (ENSMNEG00000034081) #15	COPS7A (ENSMNEG00000031298) #16	PIANP (ENSMNEG00000033631) #17	ZNF384 (ENSMNEG00000029452) #18	ING4 (ENSMNEG00000038607) #19	ACRBP (ENSMNEG00000042749) #20	LPAR5 (ENSMNEG00000011351) #21	CHD4 (ENSMNEG00000044776) #22	ENSMNEG00000034027	IFFO1 (ENSMNEG00000039291) #24	GAPDH (ENSMNEG00000040437) #25	NCAPD2 (ENSMNEG00000038279) #26	MRPL51 (ENSMNEG00000032063) #27	ENSMNEG00000040627	VAMP1 (ENSMNEG00000006897) #28	ENSMNEG00000033079	TAPBPL (ENSMNEG00000013053) #29	CD27 (ENSMNEG00000007757) #30	LTBR (ENSMNEG00000030358) #31	SCNN1A (ENSMNEG00000029812) #32	TNFRSF1A (ENSMNEG00000030151) #33	PLEKHG6 (ENSMNEG00000029942) #34	ENSMNEG00000019715
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000237444	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37	ENSGT00390000007725.A.a
Rhesus	MODERN SPECIES	2	CDCA3 (ENSMMUG00000005191) #8	GNB3 (ENSMMUG00000005190) #9	P3H3 (ENSMMUG00000005189) #10	GPR162 (ENSMMUG00000049147) #11	CD4 (ENSMMUG00000013202) #12	LAG3 (ENSMMUG00000056979) #13	ENSMMUG00000039070	ENSMMUG00000050151	MLF2 (ENSMMUG00000012206) #15	COPS7A (ENSMMUG00000009583) #16	PIANP (ENSMMUG00000050979) #17	ZNF384 (ENSMMUG00000016990) #18	ING4 (ENSMMUG00000016985) #19	ACRBP (ENSMMUG00000016983) #20	LPAR5 (ENSMMUG00000017619) #21	CHD4 (ENSMMUG00000018685) #22	NOP2 (ENSMMUG00000018683)	IFFO1 (ENSMMUG00000018681) #24	GAPDH (ENSMMUG00000018679) #25	NCAPD2 (ENSMMUG00000018677) #26	MRPL51 (ENSMMUG00000018676) #27	VAMP1 (ENSMMUG00000053354) #28	TAPBPL (ENSMMUG00000014265) #29	ENSMMUG00000053013	LTBR (ENSMMUG00000020213) #31	SCNN1A (ENSMMUG00000020212) #32	TNFRSF1A (ENSMMUG00000000377) #33	PLEKHG6 (ENSMMUG00000000375) #34	CD9 (ENSMMUG00000004470) #35	ENSMMUG00000061974	VWF (ENSMMUG00000022893) #36
Crab-eating macaque	MODERN SPECIES	2	SPSB2 (ENSMFAG00000036312)	ENSMFAG00000032800	USP5 (ENSMFAG00000000814) #7	CDCA3 (ENSMFAG00000042353) #8	GNB3 (ENSMFAG00000029449) #9	GPR162 (ENSMFAG00000037690) #11	CD4 (ENSMFAG00000041228) #12	ENSMFAG00000033048	MLF2 (ENSMFAG00000060388) #15	COPS7A (ENSMFAG00000038467) #16	PIANP (ENSMFAG00000001518) #17	ZNF384 (ENSMFAG00000037538) #18	ING4 (ENSMFAG00000001174) #19	ACRBP (ENSMFAG00000005997) #20	LPAR5 (ENSMFAG00000064722) #21	CHD4 (ENSMFAG00000003188) #22	NOP2 (ENSMFAG00000004333) #23	IFFO1 (ENSMFAG00000045145) #24	ENSMFAG00000001880 #25	NCAPD2 (ENSMFAG00000036998) #26	ENSMFAG00000051100	ENSMFAG00000051196	TAPBPL (ENSMFAG00000035334) #29	VAMP1 (ENSMFAG00000035441) #28	LTBR (ENSMFAG00000043569) #31	SCNN1A (ENSMFAG00000035743) #32	TNFRSF1A (ENSMFAG00000042238) #33	PLEKHG6 (ENSMFAG00000032181) #34	CD9 (ENSMFAG00000034485) #35	VWF (ENSMFAG00000039466) #36	ENSMFAG00000061332
Cercopithecinae_b	ANCESTRAL SPECIES	43	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35
Olive baboon	MODERN SPECIES	19	USP5 (ENSPANG00000006040) #7	CDCA3 (ENSPANG00000017670) #8	GNB3 (ENSPANG00000020582) #9	P3H3 (ENSPANG00000020167) #10	GPR162 (ENSPANG00000014122) #11	CD4 (ENSPANG00000020297) #12	LAG3 (ENSPANG00000001016) #13	ENSPANG00000001015	MLF2 (ENSPANG00000012265) #15	COPS7A (ENSPANG00000010017) #16	PIANP (ENSPANG00000019209) #17	ZNF384 (ENSPANG00000014845) #18	ING4 (ENSPANG00000008024) #19	ACRBP (ENSPANG00000017796) #20	LPAR5 (ENSPANG00000011288) #21	CHD4 (ENSPANG00000025409) #22	ENSPANG00000024426	IFFO1 (ENSPANG00000006041) #24	ENSPANG00000020757 #25	NCAPD2 (ENSPANG00000017213) #26	MRPL51 (ENSPANG00000044908) #27	VAMP1 (ENSPANG00000024944) #28	TAPBPL (ENSPANG00000017797) #29	CD27 (ENSPANG00000010690) #30	ENSPANG00000047682 #31	ENSPANG00000013116 #31	SCNN1A (ENSPANG00000009143) #32	TNFRSF1A (ENSPANG00000025410) #33	PLEKHG6 (ENSPANG00000010167) #34	ENSPANG00000035005	CD9 (ENSPANG00000019524) #35
Cercopithecinae_d	ANCESTRAL SPECIES	66	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00910000146795	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.a.a.a.a.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00910000148152	ENSGT00940000161390 #28	ENSGT00910000146645	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35
Sooty mangabey	MODERN SPECIES	609	USP5 (ENSCATG00000036103) #7	CDCA3 (ENSCATG00000041241) #8	GNB3 (ENSCATG00000024663) #9	P3H3 (ENSCATG00000040167) #10	GPR162 (ENSCATG00000029723) #11	CD4 (ENSCATG00000038270) #12	LAG3 (ENSCATG00000042803) #13	ENSCATG00000041394	MLF2 (ENSCATG00000040743) #15	COPS7A (ENSCATG00000030189) #16	PIANP (ENSCATG00000035419) #17	ZNF384 (ENSCATG00000008991) #18	ING4 (ENSCATG00000030917) #19	ACRBP (ENSCATG00000034388) #20	LPAR5 (ENSCATG00000006398) #21	CHD4 (ENSCATG00000006345) #22	ENSCATG00000006182	IFFO1 (ENSCATG00000028701) #24	ENSCATG00000044359 #25	NCAPD2 (ENSCATG00000040137) #26	MRPL51 (ENSCATG00000035810) #27	ENSCATG00000035721	ENSCATG00000040777	VAMP1 (ENSCATG00000037454) #28	ENSCATG00000041389	TAPBPL (ENSCATG00000045104) #29	CD27 (ENSCATG00000035274) #30	LTBR (ENSCATG00000033469) #31	SCNN1A (ENSCATG00000044711) #32	TNFRSF1A (ENSCATG00000034361) #33	PLEKHG6 (ENSCATG00000036270) #34
Drill	MODERN SPECIES	866	ENSMLEG00000023085	USP5 (ENSMLEG00000043334) #7	CDCA3 (ENSMLEG00000034056) #8	GNB3 (ENSMLEG00000025857) #9	P3H3 (ENSMLEG00000013218) #10	GPR162 (ENSMLEG00000013920) #11	CD4 (ENSMLEG00000032879) #12	LAG3 (ENSMLEG00000009222) #13	ENSMLEG00000039403	MLF2 (ENSMLEG00000037897) #15	COPS7A (ENSMLEG00000037093) #16	PIANP (ENSMLEG00000041991) #17	ZNF384 (ENSMLEG00000027305) #18	ING4 (ENSMLEG00000028668) #19	ACRBP (ENSMLEG00000040276) #20	CHD4 (ENSMLEG00000024661) #22	ENSMLEG00000043675	IFFO1 (ENSMLEG00000041307) #24	GAPDH (ENSMLEG00000017088) #25	NCAPD2 (ENSMLEG00000029348) #26	MRPL51 (ENSMLEG00000033346) #27	ENSMLEG00000037892	ENSMLEG00000040133	VAMP1 (ENSMLEG00000042043) #28	ENSMLEG00000037220	TAPBPL (ENSMLEG00000029420) #29	CD27 (ENSMLEG00000029295) #30	LTBR (ENSMLEG00000029285) #31	SCNN1A (ENSMLEG00000034622) #32	TNFRSF1A (ENSMLEG00000041673) #33	PLEKHG6 (ENSMLEG00000041883) #34
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Camelidae	ANCESTRAL SPECIES	17	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Arabian camel	MODERN SPECIES	27	USP5 (ENSCDRG00005019114) #7	CDCA3 (ENSCDRG00005019067) #8	GNB3 (ENSCDRG00005019041) #9	P3H3 (ENSCDRG00005018977) #10	GPR162 (ENSCDRG00005018926) #11	CD4 (ENSCDRG00005018894) #12	LAG3 (ENSCDRG00005018858) #13	PTMS (ENSCDRG00005018819) #14	MLF2 (ENSCDRG00005018784) #15	COPS7A (ENSCDRG00005018742) #16	PIANP (ENSCDRG00005018699) #17	ZNF384 (ENSCDRG00005018592) #18	ING4 (ENSCDRG00005018381) #19	ACRBP (ENSCDRG00005018263) #20	LPAR5 (ENSCDRG00005018243) #21	CHD4 (ENSCDRG00005012738) #22	NOP2 (ENSCDRG00005012504) #23	IFFO1 (ENSCDRG00005011863) #24	GAPDH (ENSCDRG00005011757) #25	NCAPD2 (ENSCDRG00005011412) #26	MRPL51 (ENSCDRG00005011359) #27	VAMP1 (ENSCDRG00005011313) #28	TAPBPL (ENSCDRG00005011181) #29	ENSCDRG00005011099 #30	ENSCDRG00005011060 #31	ENSCDRG00005011011 #31	SCNN1A (ENSCDRG00005010881) #32	TNFRSF1A (ENSCDRG00005010816) #33	PLEKHG6 (ENSCDRG00005010653) #34	CD9 (ENSCDRG00005010377) #35	VWF (ENSCDRG00005009803) #36
Alpaca	MODERN SPECIES	3563																ENSVPAG00000008829 #22	ENSVPAG00000008828 #26	MRPL51 (ENSVPAG00000008827) #27
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821.g #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821.g #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821.g #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821.g #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821.g #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Beluga whale	MODERN SPECIES	23	ENSDLEG00000015616 #8	ENSDLEG00000015607 #8	ENSDLEG00000015552 #9	ENSDLEG00000015588 #9	P3H3 (ENSDLEG00000015481) #10	GPR162 (ENSDLEG00000015459) #11	CD4 (ENSDLEG00000015440) #12	LAG3 (ENSDLEG00000015366) #13	MLF2 (ENSDLEG00000015348) #15	COPS7A (ENSDLEG00000015324) #16	PIANP (ENSDLEG00000015302) #17	ZNF384 (ENSDLEG00000015249) #18	ING4 (ENSDLEG00000015223) #19	ENSDLEG00000015216 #20	LPAR5 (ENSDLEG00000015210) #21	CHD4 (ENSDLEG00000015142) #22	NOP2 (ENSDLEG00000015109) #23	IFFO1 (ENSDLEG00000015074) #24	GAPDH (ENSDLEG00000015049) #25	NCAPD2 (ENSDLEG00000014985) #26	MRPL51 (ENSDLEG00000014972) #27	VAMP1 (ENSDLEG00000014958) #28	TAPBPL (ENSDLEG00000014928) #29	CD27 (ENSDLEG00000014916) #30	LTBR (ENSDLEG00000014872) #31	SCNN1A (ENSDLEG00000014848) #32	TNFRSF1A (ENSDLEG00000014826) #33	PLEKHG6 (ENSDLEG00000014777) #34	CD9 (ENSDLEG00000014732) #35	VWF (ENSDLEG00000007022) #36	ENSDLEG00000006754 #37
Narwhal	MODERN SPECIES	313	TPI1 (ENSMMNG00015015764)	USP5 (ENSMMNG00015015510) #7	CDCA3 (ENSMMNG00015015481) #8	GNB3 (ENSMMNG00015015448) #9	P3H3 (ENSMMNG00015015434) #10	GPR162 (ENSMMNG00015015414) #11	CD4 (ENSMMNG00015015391) #12	LAG3 (ENSMMNG00015015366) #13	PTMS (ENSMMNG00015015353) #14	MLF2 (ENSMMNG00015015337) #15	COPS7A (ENSMMNG00015015318) #16	PIANP (ENSMMNG00015015305) #17	ZNF384 (ENSMMNG00015015269) #18	ING4 (ENSMMNG00015015173) #19	ACRBP (ENSMMNG00015015110) #20	CHD4 (ENSMMNG00015015036) #22	NOP2 (ENSMMNG00015014983) #23	IFFO1 (ENSMMNG00015014957) #24	GAPDH (ENSMMNG00015014916) ##25	NCAPD2 (ENSMMNG00015014856) #26	MRPL51 (ENSMMNG00015014780) #27	VAMP1 (ENSMMNG00015014734) #28	TAPBPL (ENSMMNG00015014697) #29	CD27 (ENSMMNG00015014673) #30	LTBR (ENSMMNG00015014642) #31	SCNN1A (ENSMMNG00015014598) #32	TNFRSF1A (ENSMMNG00015014562) #33	PLEKHG6 (ENSMMNG00015014516) #34	CD9 (ENSMMNG00015014479) #35	VWF (ENSMMNG00015014423) #36	ANO2 (ENSMMNG00015014305) #37
Vaquita	MODERN SPECIES	1	USP5 (ENSPSNG00000005317) #7	ENSPSNG00000005389 #8	GNB3 (ENSPSNG00000005442) #9	P3H3 (ENSPSNG00000005493) #10	GPR162 (ENSPSNG00000005573) #11	CD4 (ENSPSNG00000005617) #12	LAG3 (ENSPSNG00000005663) #13	PTMS (ENSPSNG00000005689) #14	MLF2 (ENSPSNG00000005707) #15	COPS7A (ENSPSNG00000005746) #16	PIANP (ENSPSNG00000005778) #17	ZNF384 (ENSPSNG00000005851) #18	ING4 (ENSPSNG00000005989) #19	ACRBP (ENSPSNG00000006101) #20	LPAR5 (ENSPSNG00000006141) #21	CHD4 (ENSPSNG00000006181) #22	NOP2 (ENSPSNG00000006400) #23	IFFO1 (ENSPSNG00000006501) #24	GAPDH (ENSPSNG00000006718) #25	NCAPD2 (ENSPSNG00000006782) #26	MRPL51 (ENSPSNG00000006911) #27	VAMP1 (ENSPSNG00000006961) #28	TAPBPL (ENSPSNG00000007018) #29	CD27 (ENSPSNG00000007050) #30	LTBR (ENSPSNG00000007107) #31	SCNN1A (ENSPSNG00000007201) #32	TNFRSF1A (ENSPSNG00000007444) #33	PLEKHG6 (ENSPSNG00000007509) #34	CD9 (ENSPSNG00000007840) #35	VWF (ENSPSNG00000007898) #36	ANO2 (ENSPSNG00000008259) #37
Dolphin	MODERN SPECIES	3421																CHD4 (ENSTTRG00000016102) #22	NOP2 (ENSTTRG00000016100) #23	IFFO1 (ENSTTRG00000016097) #24	GAPDH (ENSTTRG00000016094) #25	NCAPD2 (ENSTTRG00000016088) #26	MRPL51 (ENSTTRG00000016086) #27
Sperm whale	MODERN SPECIES	151												ENSPCTG00005019803 #18	ING4 (ENSPCTG00005019618) #19	ACRBP (ENSPCTG00005019434) #20	LPAR5 (ENSPCTG00005019413) #21	CHD4 (ENSPCTG00005015922) #22	NOP2 (ENSPCTG00005015086) #23	IFFO1 (ENSPCTG00005014549) #24	GAPDH (ENSPCTG00005014498) #25
Blue whale	MODERN SPECIES	1	USP5 (ENSBMSG00010015257) #7	CDCA3 (ENSBMSG00010015169) #8	GNB3 (ENSBMSG00010015104) #9	P3H3 (ENSBMSG00010015046) #10	GPR162 (ENSBMSG00010014987) #11	CD4 (ENSBMSG00010014905) #12	LAG3 (ENSBMSG00010014753) #13	PTMS (ENSBMSG00010014712) #14	MLF2 (ENSBMSG00010014597) #15	COPS7A (ENSBMSG00010014553) #16	PIANP (ENSBMSG00010014495) #17	ZNF384 (ENSBMSG00010014353) #18	ING4 (ENSBMSG00010014218) #19	ACRBP (ENSBMSG00010014002) #20	LPAR5 (ENSBMSG00010013959) #21	CHD4 (ENSBMSG00010013201) #22	ENSBMSG00010013094	ENSBMSG00010013081 #23	IFFO1 (ENSBMSG00010012925) #24	GAPDH (ENSBMSG00010012883) #25	ENSBMSG00010012842 #27	VAMP1 (ENSBMSG00010012768) #28	TAPBPL (ENSBMSG00010012737) #29	CD27 (ENSBMSG00010012719) #30	LTBR (ENSBMSG00010012695) #31	SCNN1A (ENSBMSG00010012651) #32	TNFRSF1A (ENSBMSG00010012591) #33	PLEKHG6 (ENSBMSG00010012458) #34	CD9 (ENSBMSG00010012380) #35	VWF (ENSBMSG00010012312) #36	ANO2 (ENSBMSG00010012182) #37
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.a #25	ENSGT00580000082664.a.a	ENSGT00940000153298.n.q.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35
Rambouillet Sheep	MODERN SPECIES	19	USP5 (ENSOARG00020023279) #7	CDCA3 (ENSOARG00020023351) #8	GNB3 (ENSOARG00020023409) #9	P3H3 (ENSOARG00020023431) #10	GPR162 (ENSOARG00020004446) #11	CD4 (ENSOARG00020004460) #12	LAG3 (ENSOARG00020004514) #13	PTMS (ENSOARG00020004551) #14	MLF2 (ENSOARG00020004578) #15	COPS7A (ENSOARG00020004603) #16	PIANP (ENSOARG00020004619) #17	ZNF384 (ENSOARG00020004680) #18	ING4 (ENSOARG00020004785) #19	ACRBP (ENSOARG00020004837) #20	LPAR5 (ENSOARG00020004931) #21	CHD4 (ENSOARG00020004976) #22	NOP2 (ENSOARG00020005339) #23	IFFO1 (ENSOARG00020005394) #24	ENSOARG00020005655 #25	NCAPD2 (ENSOARG00020005706) #26	MRPL51 (ENSOARG00020005788) #27	VAMP1 (ENSOARG00020005818) #28	ENSOARG00020005857 #29	CD27 (ENSOARG00020005885) #30	LTBR (ENSOARG00020005918) #31	SCNN1A (ENSOARG00020006047) #32	TNFRSF1A (ENSOARG00020006166) #33	PLEKHG6 (ENSOARG00020006252) #34	CD9 (ENSOARG00020006407) #35	ENSOARG00020006562	VWF (ENSOARG00020006721) #36
Goat	MODERN SPECIES	24	ENSCHIG00000016031	USP5 (ENSCHIG00000012356) #7	CDCA3 (ENSCHIG00000013074) #8	GNB3 (ENSCHIG00000012696) #9	P3H3 (ENSCHIG00000000989) #10	GPR162 (ENSCHIG00000019485) #11	CD4 (ENSCHIG00000010446) #12	LAG3 (ENSCHIG00000012648) #13	MLF2 (ENSCHIG00000014233) #15	COPS7A (ENSCHIG00000013096) #16	PIANP (ENSCHIG00000017399) #17	ZNF384 (ENSCHIG00000012248) #18	ING4 (ENSCHIG00000025231) #19	ACRBP (ENSCHIG00000011452) #20	LPAR5 (ENSCHIG00000004907) #21	CHD4 (ENSCHIG00000020766) #22	NOP2 (ENSCHIG00000018560) #23	IFFO1 (ENSCHIG00000019031) #24	ENSCHIG00000022516 #25	NCAPD2 (ENSCHIG00000015626) #26	MRPL51 (ENSCHIG00000011385) #27	VAMP1 (ENSCHIG00000014523) #28	TAPBPL (ENSCHIG00000016665) #29	CD27 (ENSCHIG00000021715) #30	LTBR (ENSCHIG00000022975) #31	SCNN1A (ENSCHIG00000009435) #32	TNFRSF1A (ENSCHIG00000012735) #33	PLEKHG6 (ENSCHIG00000013835) #34	CD9 (ENSCHIG00000008887) #35	ENSCHIG00000007426	VWF (ENSCHIG00000012979) #36
Bovinae	ANCESTRAL SPECIES	10	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.c.a #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Bos	ANCESTRAL SPECIES	2	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.c.a #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.c.a #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000154384.h.a
Hybrid Bos Indicus	MODERN SPECIES	24	GNB3 (ENSBIXG00005003143) #9	P3H3 (ENSBIXG00005019389) #10	GPR162 (ENSBIXG00005003161) #11	CD4 (ENSBIXG00005019448) #12	LAG3 (ENSBIXG00005019525) #13	PTMS (ENSBIXG00005019569) #14	MLF2 (ENSBIXG00005019632) #15	ENSBIXG00005019647	COPS7A (ENSBIXG00005019728) #16	ENSBIXG00005003230	PIANP (ENSBIXG00005003237) #17	ZNF384 (ENSBIXG00005019825) #18	ING4 (ENSBIXG00005019901) #19	ACRBP (ENSBIXG00005019947) #20	LPAR5 (ENSBIXG00005019955) #21	CHD4 (ENSBIXG00005020206) #22	NOP2 (ENSBIXG00005020264) #23	IFFO1 (ENSBIXG00005003425) #24	GAPDH (ENSBIXG00005020359) #25	NCAPD2 (ENSBIXG00005020400) #26	MRPL51 (ENSBIXG00005006150) #27	ENSBIXG00005003464 #28	TAPBPL (ENSBIXG00005003468) #29	CD27 (ENSBIXG00005020535) #30	LTBR (ENSBIXG00005005674) #31	SCNN1A (ENSBIXG00005003494) #32	TNFRSF1A (ENSBIXG00005020704) #33	PLEKHG6 (ENSBIXG00005020777) #34	CD9 (ENSBIXG00005003523) #35	VWF (ENSBIXG00005020874) #36	ENSBIXG00005020908
Cow	MODERN SPECIES	24	CDCA3 (ENSBTAG00000019777) #8	GNB3 (ENSBTAG00000016043) #9	P3H3 (ENSBTAG00000003598) #10	GPR162 (ENSBTAG00000034385) #11	CD4 (ENSBTAG00000003255) #12	ENSBTAG00000051680	LAG3 (ENSBTAG00000034295) #13	PTMS (ENSBTAG00000018451)	MLF2 (ENSBTAG00000014931) #15	COPS7A (ENSBTAG00000011111) #16	PIANP (ENSBTAG00000001099) #17	ZNF384 (ENSBTAG00000017072) #18	ING4 (ENSBTAG00000017064) #19	ACRBP (ENSBTAG00000034246) #20	LPAR5 (ENSBTAG00000004541) #21	CHD4 (ENSBTAG00000014734) #22	NOP2 (ENSBTAG00000014733) #23	IFFO1 (ENSBTAG00000030369) #24	GAPDH (ENSBTAG00000014731) ##25	NCAPD2 (ENSBTAG00000014730) #26	MRPL51 (ENSBTAG00000014729) #27	VAMP1 (ENSBTAG00000014603) #28	TAPBPL (ENSBTAG00000014728) #29	CD27 (ENSBTAG00000014725) #30	LTBR (ENSBTAG00000015312) #31	SCNN1A (ENSBTAG00000002631) #32	TNFRSF1A (ENSBTAG00000004211) #33	PLEKHG6 (ENSBTAG00000004208) #34	CD9 (ENSBTAG00000014764) #35	VWF (ENSBTAG00000012265) #36	ENSBTAG00000011758
Bos_a	ANCESTRAL SPECIES	24	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.c.a #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Domestic yak	MODERN SPECIES	24	USP5 (ENSBGRG00000022011) #7	CDCA3 (ENSBGRG00000022253) #8	GNB3 (ENSBGRG00000022348) #9	P3H3 (ENSBGRG00000022465) #10	GPR162 (ENSBGRG00000022613) #11	CD4 (ENSBGRG00000000298) #12	LAG 3 (ENSBGRG00000000330) #13	PTMS (ENSBGRG00000000358) #14	MLF2 (ENSBGRG00000000386) #15	COPS7A (ENSBGRG00000000425) #16	PIANP (ENSBGRG00000000449) #17	ZNF384 (ENSBGRG00000000467) #18	ENSBGRG00000000548 #19	ACRBP (ENSBGRG00000000596) #20	LPAR5 (ENSBGRG00000000647) #21	CHD4 (ENSBGRG00000000684) #22	NOP2 (ENSBGRG00000000846) #23	IFFO1 (ENSBGRG00000000872) #24	ENSBGRG00000001026 #24	ENSBGRG00000001042 #25	MRPL51 (ENSBGRG00000001145) #27	VAMP1 (ENSBGRG00000001169) #28	ENSBGRG00000001236 #29	CD27 (ENSBGRG00000001262) #30	LTBR (ENSBGRG00000001281) #31	ENSBGRG00000001292	SCNN1A (ENSBGRG00000001315) #32	TNFRSF1A (ENSBGRG00000001449) #33	PLEKHG6 (ENSBGRG00000001519) #34	CD9 (ENSBGRG00000001613) #35	VWF (ENSBGRG00000002102) #36
Wild yak	MODERN SPECIES	2103	USP5 (ENSBMUG00000009512) #7	CDCA3 (ENSBMUG00000009485) #8	GNB3 (ENSBMUG00000009430) #9	P3H3 (ENSBMUG00000009413) #10	ENSBMUG00000009392 #11	CD4 (ENSBMUG00000009372) #12	LAG3 (ENSBMUG00000009333) #13	ENSBMUG00000009305	MLF2 (ENSBMUG00000009291) #15	COPS7A (ENSBMUG00000009260) #16	PIANP (ENSBMUG00000009210) #17	ZNF384 (ENSBMUG00000009149) #18	ENSBMUG00000009099 #19	ACRBP (ENSBMUG00000009077) #20	LPAR5 (ENSBMUG00000009068) #21	CHD4 (ENSBMUG00000008731) #22	NOP2 (ENSBMUG00000008536) #23	IFFO1 (ENSBMUG00000008419) #24	ENSBMUG00000007065 #25	NCAPD2 (ENSBMUG00000006625) #26	MRPL51 (ENSBMUG00000006603) #27	ENSBMUG00000006576 #28	TAPBPL (ENSBMUG00000006543) #29	CD27 (ENSBMUG00000006538) #30	LTBR (ENSBMUG00000006531) #31	SCNN1A (ENSBMUG00000006521) #32	TNFRSF1A (ENSBMUG00000006501) #33	PLEKHG6 (ENSBMUG00000006422) #34	CD9 (ENSBMUG00000006345) #35
American bison	MODERN SPECIES	3130	CDCA3 (ENSBBBG00000013314) #8	GNB3 (ENSBBBG00000001619) #9	P3H3 (ENSBBBG00000013282) #10	ENSBBBG00000002685 #11	CD4 (ENSBBBG00000013265) #12	LAG3 (ENSBBBG00000001644) #13	PTMS (ENSBBBG00000013194) #14	MLF2 (ENSBBBG00000013185) #15	ENSBBBG00000013172	ENSBBBG00000013164 #16	PIANP (ENSBBBG00000008904) #17	ZNF384 (ENSBBBG00000013145) #18	ENSBBBG00000013090 #19	ACRBP (ENSBBBG00000013082) #20	LPAR5 (ENSBBBG00000013073) #21	CHD4 (ENSBBBG00000013055) #22	NOP2 (ENSBBBG00000012839) #23	IFFO1 (ENSBBBG00000002480) #24	GAPDH (ENSBBBG00000012745) #25	NCAPD2 (ENSBBBG00000012598) #26	MRPL51 (ENSBBBG00000012567) #27	VAMP1 (ENSBBBG00000012550) #28	ENSBBBG00000002403 #29	CD27 (ENSBBBG00000009087) #30	LTBR (ENSBBBG00000002397) #31	SCNN1A (ENSBBBG00000012488) #32	ENSBBBG00000012468 #33	PLEKHG6 (ENSBBBG00000012442) #34	CD9 (ENSBBBG00000002367) #35	VWF (ENSBBBG00000012369) #36	ANO2 (ENSBBBG00000012336) #37
Siberian musk deer	MODERN SPECIES	1247	USP5 (ENSMMSG00000022009) #7	CDCA3 (ENSMMSG00000021980) #8	GNB3 (ENSMMSG00000021946) #9	P3H3 (ENSMMSG00000021912) #10	GPR162 (ENSMMSG00000021887) #11	CD4 (ENSMMSG00000021846) #12	LAG3 (ENSMMSG00000021775) #13	PTMS (ENSMMSG00000021756) #14	MLF2 (ENSMMSG00000021729) #15	COPS7A (ENSMMSG00000021708) #16	PIANP (ENSMMSG00000021673) #17	ZNF384 (ENSMMSG00000021579) #18	ING4 (ENSMMSG00000021540) #19	ACRBP (ENSMMSG00000021440) #20	LPAR5 (ENSMMSG00000021424) #21	CHD4 (ENSMMSG00000020011) #22	NOP2 (ENSMMSG00000019764) #23	IFFO1 (ENSMMSG00000019638) #24	ENSMMSG00000019587 #25	NCAPD2 (ENSMMSG00000019414) #26	ENSMMSG00000019365 #27	VAMP1 (ENSMMSG00000019324) #28	TAPBPL (ENSMMSG00000019259) #29	CD27 (ENSMMSG00000019226) #30	LTBR (ENSMMSG00000019158) #31	SCNN1A (ENSMMSG00000019053) #32	TNFRSF1A (ENSMMSG00000018960) #33	PLEKHG6 (ENSMMSG00000018872) #34	CD9 (ENSMMSG00000018829) #35	VWF (ENSMMSG00000018577) #36	ANO2 (ENSMMSG00000018256) #37
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	14	USP5 (ENSCHYG00000023817) #7	CDCA3 (ENSCHYG00000024020) #8	GNB3 (ENSCHYG00000024150) #9	P3H3 (ENSCHYG00000024241) #10	GPR162 (ENSCHYG00000024446) #11	CD4 (ENSCHYG00000024477) #12	LAG3 (ENSCHYG00000024522) #13	ENSCHYG00000024584	MLF2 (ENSCHYG00000024596) #15	COPS7A (ENSCHYG00000024633) #16	PIANP (ENSCHYG00000024684) #17	ZNF384 (ENSCHYG00000024746) #18	ING4 (ENSCHYG00000024855) #19	ACRBP (ENSCHYG00000024938) #20	LPAR5 (ENSCHYG00000024995) #21	CHD4 (ENSCHYG00000025019) #22	NOP2 (ENSCHYG00000025184) #23	IFFO1 (ENSCHYG00000025348) #24	ENSCHYG00000025387 #25	NCAPD2 (ENSCHYG00000025563) #26	MRPL51 (ENSCHYG00000025676) #27	ENSCHYG00000025696	ENSCHYG00000025715 #28	TAPBPL (ENSCHYG00000025766) #29	ENSCHYG00000025783	CD27 (ENSCHYG00000025790) #30	LTBR (ENSCHYG00000025819) #31	SCNN1A (ENSCHYG00000025885) #32	TNFRSF1A (ENSCHYG00000025998) #33	PLEKHG6 (ENSCHYG00000026050) #34	CD9 (ENSCHYG00000026113) #35
Yarkand deer	MODERN SPECIES	20	CNR1 (ENSCHYG00000017842)	RNGTT (ENSCHYG00000016761)	SRSF12 (ENSCHYG00000016627)	PM20D2 (ENSCHYG00000016435)	GABRR1 (ENSCHYG00000016366)	GABRR2 (ENSCHYG00000016264)	UBE2J1 (ENSCHYG00000016187)	RRAGD (ENSCHYG00000016025)	ANKRD6 (ENSCHYG00000015728)	ENSCHYG00000015660	MDN1 (ENSCHYG00000015140)	CASP8AP2 (ENSCHYG00000014964)	GJA10 (ENSCHYG00000014902)	BACH2 (ENSCHYG00000014828)	MAP3K7 (ENSCHYG00000014445)	ENSCHYG00000014181 #22	EPHA7 (ENSCHYG00000013949)	ENSCHYG00000013893	MANEA (ENSCHYG00000025768)	FUT9 (ENSCHYG00000025764)	UFL1 (ENSCHYG00000025727)	FHL5 (ENSCHYG00000025707)	NDUFAF4 (ENSCHYG00000025688)	KLHL32 (ENSCHYG00000025369)	MMS22L (ENSCHYG00000025279)	POU3F2 (ENSCHYG00000025261)	FBXL4 (ENSCHYG00000025242)	FAXC (ENSCHYG00000025221)	COQ3 (ENSCHYG00000025175)	PNISR (ENSCHYG00000025150)	USP45 (ENSCHYG00000025122)
Suina	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Chacoan peccary	MODERN SPECIES	901	CDCA3 (ENSCWAG00000004557) #8	GNB3 (ENSCWAG00000004448) #9	P3H3 (ENSCWAG00000004391) #10	GPR162 (ENSCWAG00000004328) #11	ENSCWAG00000004287 #12	ENSCWAG00000004259 #12	LAG3 (ENSCWAG00000004203) #13	PTMS (ENSCWAG00000004167) #14	MLF2 (ENSCWAG00000004129) #15	COPS7A (ENSCWAG00000004095) #16	PIANP (ENSCWAG00000004033) #17	ZNF384 (ENSCWAG00000003930) #18	ING4 (ENSCWAG00000020218) #19	ACRBP (ENSCWAG00000020184) #20	LPAR5 (ENSCWAG00000020180) #21	CHD4 (ENSCWAG00000020000) #22	NOP2 (ENSCWAG00000019949) #23	IFFO1 (ENSCWAG00000019666) #24	GAPDH (ENSCWAG00000019631) #25	NCAPD2 (ENSCWAG00000019604) #26	MRPL51 (ENSCWAG00000019574) #27	VAMP1 (ENSCWAG00000019488) #28	TAPBPL (ENSCWAG00000019420) #29	CD27 (ENSCWAG00000019371) #30	LTBR (ENSCWAG00000019319) #31	SCNN1A (ENSCWAG00000019063) #32	TNFRSF1A (ENSCWAG00000019019) #33	PLEKHG6 (ENSCWAG00000018796) #34	CD9 (ENSCWAG00000018715) #35	VWF (ENSCWAG00000018464) #36	ANO2 (ENSCWAG00000018045) #37
Pig	MODERN SPECIES	13	CDCA3 (ENSSSCG00000000683) #8	GNB3 (ENSSSCG00000000682) #9	P3H3 (ENSSSCG00000000681) #10	GPR162 (ENSSSCG00000000680) #11	CD4 (ENSSSCG00000000687) #12	LAG3 (ENSSSCG00000000688) #13	ENSSSCG00000022176 #14	MLF2 (ENSSSCG00000000690) #15	COPS7A (ENSSSCG00000000691) #16	ENSSSCG00000058867	PIANP (ENSSSCG00000000692) #17	ZNF384 (ENSSSCG00000000702) #18	ING4 (ENSSSCG00000044078) #19	ACRBP (ENSSSCG00000000700) #20	LPAR5 (ENSSSCG00000000699) #21	CHD4 (ENSSSCG00000000697) #22	NOP2 (ENSSSCG00000000696) #23	IFFO1 (ENSSSCG00000000695) #24	GAPDH (ENSSSCG00000000694) #25	NCAPD2 (ENSSSCG00000000693) #26	MRPL51 (ENSSSCG00000039662) #27	ENSSSCG00000000703 #28	TAPBPL (ENSSSCG00000000704) #29	CD27 (ENSSSCG00000063084) #30	LTBR (ENSSSCG00000000706) #31	SCNN1A (ENSSSCG00000000707) #32	TNFRSF1A (ENSSSCG00000000708) #33	PLEKHG6 (ENSSSCG00000000709) #34	CD9 (ENSSSCG00000022230) #35	VWF (ENSSSCG00000000712) #36	NTF3 (ENSSSCG00000033544)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Equus	ANCESTRAL SPECIES	28	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.g.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Donkey	MODERN SPECIES	14	USP5 (ENSEASG00005016070) #7	CDCA3 (ENSEASG00005016075) #8	GNB3 (ENSEASG00005016089) #9	P3H3 (ENSEASG00005016118) #10	GPR162 (ENSEASG00005016119) #11	CD4 (ENSEASG00005016122) #12	LAG3 (ENSEASG00005016128) #13	ENSEASG00005016131 #14	MLF2 (ENSEASG00005016135) #15	COPS7A (ENSEASG00005016138) #16	PIANP (ENSEASG00005016141) #17	ZNF384 (ENSEASG00005016142) #18	ING4 (ENSEASG00005016144) #19	ACRBP (ENSEASG00005025354) #20	LPAR5 (ENSEASG00005033413) #21	CHD4 (ENSEASG00005016150) #22	NOP2 (ENSEASG00005016153) #23	IFFO1 (ENSEASG00005016154) #24	ENSEASG00005016156 #25	NCAPD2 (ENSEASG00005016158) #26	MRPL51 (ENSEASG00005035991) #27	ENSEASG00005035678	TAPBPL (ENSEASG00005016162) #29	ENSEASG00005036568 #30	VAMP1 (ENSEASG00005037737) #28	LTBR (ENSEASG00005016171) #31	SCNN1A (ENSEASG00005016173) #32	TNFRSF1A (ENSEASG00005016176) #33	PLEKHG6 (ENSEASG00005016179) #34	CD9 (ENSEASG00005016182) #35	VWF (ENSEASG00005016355) #36
Horse	MODERN SPECIES	27	SPSB2 (ENSECAG00000033679)	USP5 (ENSECAG00000014532) #7	CDCA3 (ENSECAG00000014517) #8	P3H3 (ENSECAG00000021815) #10	ENSECAG00000054174	CD4 (ENSECAG00000009049) #12	LAG3 (ENSECAG00000002971) #13	ENSECAG00000042372 #14	MLF2 (ENSECAG00000022587) #15	COPS7A (ENSECAG00000015911) #16	PIANP (ENSECAG00000015893) #17	ZNF384 (ENSECAG00000009490) #18	ING4 (ENSECAG00000024784) #19	LPAR5 (ENSECAG00000023339) #21	ACRBP (ENSECAG00000023343) #20	CHD4 (ENSECAG00000022005) #22	NOP2 (ENSECAG00000012639) #23	IFFO1 (ENSECAG00000010254) #24	GAPDH (ENSECAG00000022051) #25	NCAPD2 (ENSECAG00000017796) #26	ENSECAG00000040327	TAPBPL (ENSECAG00000012920) #29	CD27 (ENSECAG00000011126) #30	VAMP1 (ENSECAG00000014602) #28	LTBR (ENSECAG00000000458) #31	SCNN1A (ENSECAG00000001443) #32	TNFRSF1A (ENSECAG00000016330) #33	PLEKHG6 (ENSECAG00000012373) #34	CD9 (ENSECAG00000003002) #35	VWF (ENSECAG00000010778) #36	ANO2 (ENSECAG00000024617) #37
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Megabat	MODERN SPECIES	3606																CHD4 (ENSPVAG00000012574) #22	NOP2 (ENSPVAG00000012572) #23	IFFO1 (ENSPVAG00000012571) #24	ENSPVAG00000012570	NCAPD2 (ENSPVAG00000012567) #26	MRPL51 (ENSPVAG00000012566) #27	VAMP1 (ENSPVAG00000012565) #28	TAPBPL (ENSPVAG00000012563) #29	CD27 (ENSPVAG00000012562) #30	LTBR (ENSPVAG00000012560) #31	SCNN1A (ENSPVAG00000012558) #32	TNFRSF1A (ENSPVAG00000012556) #33	PLEKHG6 (ENSPVAG00000012554) #34
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Microbat	MODERN SPECIES	947	USP5 (ENSMLUG00000013790) #7	CDCA3 (ENSMLUG00000006726) #8	GNB3 (ENSMLUG00000006739) #9	P3H3 (ENSMLUG00000006754) #10	GPR162 (ENSMLUG00000022349) #11	CD4 (ENSMLUG00000024020) #12	LAG3 (ENSMLUG00000013787) #13	PTMS (ENSMLUG00000013783) #14	MLF2 (ENSMLUG00000013779) #15	COPS7A (ENSMLUG00000013776) #16	PIANP (ENSMLUG00000004845) #17	ZNF384 (ENSMLUG00000013771) #18	ING4 (ENSMLUG00000029523) #19	ACRBP (ENSMLUG00000025466) #20	LPAR5 (ENSMLUG00000013768) #21	CHD4 (ENSMLUG00000014343) #22	NOP2 (ENSMLUG00000014333) #23	IFFO1 (ENSMLUG00000014327) #24	ENSMLUG00000014320 #25	NCAPD2 (ENSMLUG00000014309) #26	VAMP1 (ENSMLUG00000014307) #28	TAPBPL (ENSMLUG00000014300) #29	CD27 (ENSMLUG00000014298) #30	LTBR (ENSMLUG00000014294) #31	SCNN1A (ENSMLUG00000014284) #32	TNFRSF1A (ENSMLUG00000014278) #33	PLEKHG6 (ENSMLUG00000014270) #34	CD9 (ENSMLUG00000006901) #35	VWF (ENSMLUG00000015993) #36	ANO2 (ENSMLUG00000015973) #37	NTF3 (ENSMLUG00000012482)
Greater horseshoe bat	MODERN SPECIES	1	CDCA3 (ENSRFEG00010003221) #8	GNB3 (ENSRFEG00010003179) #9	P3H3 (ENSRFEG00010003127) #10	GPR162 (ENSRFEG00010003086) #11	CD4 (ENSRFEG00010003064) #12	LAG3 (ENSRFEG00010003036) #13	PTMS (ENSRFEG00010003014) #14	MLF2 (ENSRFEG00010002982) #15	COPS7A (ENSRFEG00010002955) #16	ENSRFEG00010002934	PIANP (ENSRFEG00010002897) #17	ZNF384 (ENSRFEG00010002854) #18	ING4 (ENSRFEG00010002769) #19	ACRBP (ENSRFEG00010002675) #20	LPAR5 (ENSRFEG00010002641) #21	CHD4 (ENSRFEG00010002190) #22	NOP2 (ENSRFEG00010001957) #23	IFFO1 (ENSRFEG00010001885) #24	ENSRFEG00010001850 ##25	NCAPD2 (ENSRFEG00010001784) #26	MRPL51 (ENSRFEG00010001755) #27	TAPBPL (ENSRFEG00010001724) #29	CD27 (ENSRFEG00010001691) #30	LTBR (ENSRFEG00010001600) #31	VAMP1 (ENSRFEG00010001570) #28	SCNN1A (ENSRFEG00010001487) #32	TNFRSF1A (ENSRFEG00010001395) #33	PLEKHG6 (ENSRFEG00010001287) #34	CD9 (ENSRFEG00010001199) #35	VWF (ENSRFEG00010001025) #36	ANO2 (ENSRFEG00010000920) #37
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Cat	MODERN SPECIES	238	USP5 (ENSFCAG00000004276) #7	CDCA3 (ENSFCAG00000004274) #8	GNB3 (ENSFCAG00000012371) #9	P3H3 (ENSFCAG00000004270) #10	GPR162 (ENSFCAG00000024524) #11	CD4 (ENSFCAG00000004269) #12	LAG3 (ENSFCAG00000006886) #13	PTMS (ENSFCAG00000043997) #14	ENSFCAG00000032640	COPS7A (ENSFCAG00000043178) #16	PIANP (ENSFCAG00000024891) #17	ZNF384 (ENSFCAG00000006882) #18	ING4 (ENSFCAG00000006880) #19	ACRBP (ENSFCAG00000006879) #20	LPAR5 (ENSFCAG00000006878) #21	CHD4 (ENSFCAG00000006877) #22	NOP2 (ENSFCAG00000006876) #23	IFFO1 (ENSFCAG00000029815) #24	GAPDH (ENSFCAG00000006874) #25	NCAPD2 (ENSFCAG00000006873) #26	MRPL51 (ENSFCAG00000043270) #27	VAMP1 (ENSFCAG00000036228) #28	TAPBPL (ENSFCAG00000006871) #29	CD27 (ENSFCAG00000006870) #30	LTBR (ENSFCAG00000008592) #31	SCNN1A (ENSFCAG00000006869) #32	TNFRSF1A (ENSFCAG00000006868) #33	PLEKHG6 (ENSFCAG00000006865) #34	CD9 (ENSFCAG00000034944) #35	VWF (ENSFCAG00000006861) #36	ENSFCAG00000034293
Panthera	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Tiger	MODERN SPECIES	306	USP5 (ENSPTIG00000020715) #7	CDCA3 (ENSPTIG00000021746) #8	GNB3 (ENSPTIG00000000824) #9	P3H3 (ENSPTIG00000003404) #10	ENSPTIG00000005722 #11	CD4 (ENSPTIG00000006621) #12	LAG3 (ENSPTIG00000008140) #13	ENSPTIG00000008812	PTMS (ENSPTIG00000009333) #14	MLF2 (ENSPTIG00000010093) #15	COPS7A (ENSPTIG00000011947) #16	PIANP (ENSPTIG00000013952) #17	ZNF384 (ENSPTIG00000014865) #18	ING4 (ENSPTIG00000020118) #19	ACRBP (ENSPTIG00000008221) #20	CHD4 (ENSPTIG00000010979) #22	NOP2 (ENSPTIG00000020543) #23	ENSPTIG00000009245 #24	GAPDH (ENSPTIG00000010777) #25	NCAPD2 (ENSPTIG00000015885) #26	MRPL51 (ENSPTIG00000016877) #27	VAMP1 (ENSPTIG00000018179) #28	ENSPTIG00000018791	TAPBPL (ENSPTIG00000019354) #29	CD27 (ENSPTIG00000004351) #30	ENSPTIG00000006690	LTBR (ENSPTIG00000005394) #31	SCNN1A (ENSPTIG00000005994) #32	ENSPTIG00000009056 #33	PLEKHG6 (ENSPTIG00000010482) #34	CD9 (ENSPTIG00000015011) #35
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00910000146741	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
leopard	MODERN SPECIES	45	TPI1 (ENSPPRG00000023572)	USP5 (ENSPPRG00000020797) #7	CDCA3 (ENSPPRG00000014482) #8	GNB3 (ENSPPRG00000013637) #9	P3H3 (ENSPPRG00000012543) #10	ENSPPRG00000012222 #11	CD4 (ENSPPRG00000011287) #12	LAG3 (ENSPPRG00000010078) #13	PTMS (ENSPPRG00000009564) #14	ENSPPRG00000009219	COPS7A (ENSPPRG00000008884) #16	PIANP (ENSPPRG00000007131) #17	ZNF384 (ENSPPRG00000006494) #18	ING4 (ENSPPRG00000004136) #19	ACRBP (ENSPPRG00000002388) #20	CHD4 (ENSPPRG00000001388) #22	NOP2 (ENSPPRG00000012300) #23	IFFO1 (ENSPPRG00000008354) #24	ENSPPRG00000005020 #25	NCAPD2 (ENSPPRG00000001126) #26	MRPL51 (ENSPPRG00000000742) #27	VAMP1 (ENSPPRG00000000234) #28	TAPBPL (ENSPPRG00000022848) #29	ENSPPRG00000022113	CD27 (ENSPPRG00000020532) #30	LTBR (ENSPPRG00000016051) #31	SCNN1A (ENSPPRG00000012858) #32	TNFRSF1A (ENSPPRG00000009962) #33	PLEKHG6 (ENSPPRG00000008925) #34	CD9 (ENSPPRG00000005804) #35	VWF (ENSPPRG00000004677) #36
lion	MODERN SPECIES	7	USP5 (ENSPLOG00000002867) #7	CDCA3 (ENSPLOG00000002825) #8	GNB3 (ENSPLOG00000002795) #9	P3H3 (ENSPLOG00000002749) #10	GPR162 (ENSPLOG00000002701) #11	CD4 (ENSPLOG00000002666) #12	LAG3 (ENSPLOG00000002630) #13	PTMS (ENSPLOG00000002603) #14	MLF2 (ENSPLOG00000002583) #15	COPS7A (ENSPLOG00000002565) #16	PIANP (ENSPLOG00000002539) #17	ZNF384 (ENSPLOG00000002498) #18	ING4 (ENSPLOG00000002451) #19	ACRBP (ENSPLOG00000002396) #20	LPAR5 (ENSPLOG00000002380) #21	CHD4 (ENSPLOG00000001912) #22	NOP2 (ENSPLOG00000001635) #23	IFFO1 (ENSPLOG00000001507) #24	GAPDH (ENSPLOG00000001339) #25	NCAPD2 (ENSPLOG00000001201) #26	MRPL51 (ENSPLOG00000001173) #27	VAMP1 (ENSPLOG00000001138) #28	TAPBPL (ENSPLOG00000001078) #29	CD27 (ENSPLOG00000001037) #30	LTBR (ENSPLOG00000000954) #31	SCNN1A (ENSPLOG00000000874) #32	TNFRSF1A (ENSPLOG00000000829) #33	PLEKHG6 (ENSPLOG00000000617) #34	CD9 (ENSPLOG00000015832) #35	VWF (ENSPLOG00000015265) #36	ANO2 (ENSPLOG00000014508) #37
Caniformia	ANCESTRAL SPECIES	19	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Mustelinae	ANCESTRAL SPECIES	95	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00910000146741	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36
Ferret	MODERN SPECIES	284	CDCA3 (ENSMPUG00000016781) #8	GNB3 (ENSMPUG00000016783) #9	P3H3 (ENSMPUG00000016793) #10	GPR162 (ENSMPUG00000016806) #11	CD4 (ENSMPUG00000016809) #12	LAG3 (ENSMPUG00000016825) #13	ENSMPUG00000016828	PTMS (ENSMPUG00000016830) #14	MLF2 (ENSMPUG00000016834) #15	COPS7A (ENSMPUG00000016835) #16	PIANP (ENSMPUG00000016836) #17	ZNF384 (ENSMPUG00000016838) #18	ING4 (ENSMPUG00000016840) #19	ACRBP (ENSMPUG00000016855) #20	LPAR5 (ENSMPUG00000020129) #21	CHD4 (ENSMPUG00000016859) #22	NOP2 (ENSMPUG00000016865) #23	IFFO1 (ENSMPUG00000016884) #24	GAPDH (ENSMPUG00000016891) #25	NCAPD2 (ENSMPUG00000016901) #26	MRPL51 (ENSMPUG00000016904) #27	VAMP1 (ENSMPUG00000016905) #28	TAPBPL (ENSMPUG00000016907) #29	CD27 (ENSMPUG00000016908) #30	SCNN1A (ENSMPUG00000016912) #32	LTBR (ENSMPUG00000016913) #31	TNFRSF1A (ENSMPUG00000016915) #33	PLEKHG6 (ENSMPUG00000016918) #34	CD9 (ENSMPUG00000016921) #35	VWF (ENSMPUG00000016935) #36	ANO2 (ENSMPUG00000016940) #37
American mink	MODERN SPECIES	333	USP5 (ENSNVIG00000024627) #7	CDCA3 (ENSNVIG00000024628) #8	GNB3 (ENSNVIG00000024629) #9	P3H3 (ENSNVIG00000024630) #10	GPR162 (ENSNVIG00000024631) #11	CD4 (ENSNVIG00000024632) #12	LAG3 (ENSNVIG00000024633) #13	PTMS (ENSNVIG00000024634) #14	MLF2 (ENSNVIG00000024635) #15	CSN7A (ENSNVIG00000024636) #16	PIANP (ENSNVIG00000024637) #17	ZNF384 (ENSNVIG00000024638) #18	ING4 (ENSNVIG00000024639) #19	ACRBP (ENSNVIG00000024640) #20	LPAR5 (ENSNVIG00000024641) #21	CHD4 (ENSNVIG00000024642) #22	NOP2 (ENSNVIG00000024649) #23	ENSNVIG00000024651	IFFO1 (ENSNVIG00000024654) #24	ENSNVIG00000024662 #25	NCAPD2 (ENSNVIG00000024666) #26	RM51 (ENSNVIG00000024669) #27	VAMP1 (ENSNVIG00000024673) #28	ENSNVIG00000024678	TAPBPL (ENSNVIG00000024679) #29	CD27 (ENSNVIG00000024681) #30	LTBR (ENSNVIG00000024684) #31	SCNN1A (ENSNVIG00000024691) #32	TNFRSF1A (ENSNVIG00000024699) #33	PLEKHG6 (ENSNVIG00000024709) #34	CD9 (ENSNVIG00000024720) #35
Ursidae	ANCESTRAL SPECIES	25	ENSGT00390000013354.d.b	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873.b #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b.j #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Ursus	ANCESTRAL SPECIES	103	ENSGT00390000013354.d.b	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873.b #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00940000153298.n.q.k.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b.j #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37	ENSGT00390000007725.A.a
Polar bear	MODERN SPECIES	484	LRRC23 (ENSUMAG00000004125)	SPSB2 (ENSUMAG00000004129)	TPI1 (ENSUMAG00000004130)	USP5 (ENSUMAG00000004200) #7	CDCA3 (ENSUMAG00000004864) #8	GNB3 (ENSUMAG00000004881) #9	P3H3 (ENSUMAG00000004936) #10	CD4 (ENSUMAG00000004996) #12	LAG3 (ENSUMAG00000005008) #13	MLF2 (ENSUMAG00000005049) #15	COPS7A (ENSUMAG00000005057) #16	PIANP (ENSUMAG00000005067) #17	ZNF384 (ENSUMAG00000005073) #18	ING4 (ENSUMAG00000005092) #19	ACRBP (ENSUMAG00000005096) #20	CHD4 (ENSUMAG00000005336) #22	NOP2 (ENSUMAG00000007220) #23	GAPDH (ENSUMAG00000007239) #25	NCAPD2 (ENSUMAG00000007255) #26	MRPL51 (ENSUMAG00000007393) #27	ENSUMAG00000007395 #28	TAPBPL (ENSUMAG00000007397) #29	CD27 (ENSUMAG00000007399) #30	LTBR (ENSUMAG00000007402) #31	SCNN1A (ENSUMAG00000007429) #32	ENSUMAG00000007495 #33	PLEKHG6 (ENSUMAG00000007501) #34	CD9 (ENSUMAG00000007507) #35	VWF (ENSUMAG00000007512) #36	ANO2 (ENSUMAG00000007545) #37	NTF3 (ENSUMAG00000007725)
American black bear	MODERN SPECIES	2013									MLF2 (ENSUAMG00000022896) #15	COPS7A (ENSUAMG00000022895) #16	PIANP (ENSUAMG00000022893) #17	ZNF384 (ENSUAMG00000022892) #18	ING4 (ENSUAMG00000022890) #19	ACRBP (ENSUAMG00000022888) #20	LPAR5 (ENSUAMG00000022887) #21	CHD4 (ENSUAMG00000016452) #22	NOP2 (ENSUAMG00000016105) #23
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	7	USP5 (ENSAMEG00000013920) #7	CDCA3 (ENSAMEG00000013985) #8	GNB3 (ENSAMEG00000013993) #9	P3H3 (ENSAMEG00000014022) #10	GPR162 (ENSAMEG00000014035) #11	CD4 (ENSAMEG00000014043) #12	LAG3 (ENSAMEG00000014063) #13	ENSAMEG00000014074	MLF2 (ENSAMEG00000014077) #15	COPS7A (ENSAMEG00000014096) #16	PIANP (ENSAMEG00000014112) #17	ZNF384 (ENSAMEG00000014121) #18	ING4 (ENSAMEG00000014135) #19	ACRBP (ENSAMEG00000014163) #20	LPAR5 (ENSAMEG00000031134) #21	CHD4 (ENSAMEG00000014179) #22	NOP2 (ENSAMEG00000014268) #23	IFFO1 (ENSAMEG00000014300) #24	GAPDH (ENSAMEG00000014329) #25	NCAPD2 (ENSAMEG00000014358) #26	MRPL51 (ENSAMEG00000014426) #27	VAMP1 (ENSAMEG00000014438) #28	TAPBPL (ENSAMEG00000014448) #29	CD27 (ENSAMEG00000014466) #30	LTBR (ENSAMEG00000014476) #31	SCNN1A (ENSAMEG00000014498) #32	TNFRSF1A (ENSAMEG00000014569) #33	ENSAMEG00000014597 #34	CD9 (ENSAMEG00000014604) #35	ENSAMEG00000006889	VWF (ENSAMEG00000011272) #36
Giant Panda	MODERN SPECIES	842																ENSAMEG00000026206 #22
Canidae	ANCESTRAL SPECIES	8	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l.h.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Red fox	MODERN SPECIES	18	ENSVVUG00000011024	USP5 (ENSVVUG00000011044) #7	CDCA3 (ENSVVUG00000011065) #8	GNB3 (ENSVVUG00000011081) #9	P3H3 (ENSVVUG00000011231) #10	GPR162 (ENSVVUG00000011261) #11	CD4 (ENSVVUG00000011267) #12	LAG3 (ENSVVUG00000011272) #13	MLF2 (ENSVVUG00000011279) #15	COPS7A (ENSVVUG00000011285) #16	PIANP (ENSVVUG00000011301) #17	ZNF384 (ENSVVUG00000011329) #18	ING4 (ENSVVUG00000011352) #19	ACRBP (ENSVVUG00000011379) #20	LPAR5 (ENSVVUG00000011401) #21	CHD4 (ENSVVUG00000011414) #22	NOP2 (ENSVVUG00000011466) #23	IFFO1 (ENSVVUG00000011850) #24	NCAPD2 (ENSVVUG00000011972) #26	MRPL51 (ENSVVUG00000012022) #27	ENSVVUG00000012024 #28	TAPBPL (ENSVVUG00000012035) #29	CD27 (ENSVVUG00000012048) #30	LTBR (ENSVVUG00000012052) #31	SCNN1A (ENSVVUG00000012062) #32	ENSVVUG00000012070 #33	PLEKHG6 (ENSVVUG00000012077) #34	CD9 (ENSVVUG00000012181) #35	VWF (ENSVVUG00000012603) #36	ANO2 (ENSVVUG00000017708) #37	NTF3 (ENSVVUG00000017711)
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n.q.l.h.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Dingo	MODERN SPECIES	56	USP5 (ENSCAFG00020003066) #7	CDCA3 (ENSCAFG00020003055) #8	GNB3 (ENSCAFG00020003050) #9	P3H3 (ENSCAFG00020003004) #10	GPR162 (ENSCAFG00020002990) #11	CD4 (ENSCAFG00020002986) #12	LAG3 (ENSCAFG00020002976) #13	ENSCAFG00020002965 #14	MLF2 (ENSCAFG00020002950) #15	COPS7A (ENSCAFG00020002947) #16	PIANP (ENSCAFG00020002942) #17	ZNF384 (ENSCAFG00020002932) #18	ING4 (ENSCAFG00020002927) #19	ACRBP (ENSCAFG00020002916) #20	LPAR5 (ENSCAFG00020002907) #21	CHD4 (ENSCAFG00020002892) #22	NOP2 (ENSCAFG00020002884) #23	IFFO1 (ENSCAFG00020002877) #24	NCAPD2 (ENSCAFG00020002859) #26	MRPL51 (ENSCAFG00020002857) #27	VAMP1 (ENSCAFG00020002856) #28	TAPBPL (ENSCAFG00020002854) #29	CD27 (ENSCAFG00020002851) #30	ENSCAFG00020002845 #31
Dog	MODERN SPECIES	19	USP5 (ENSCAFG00845027217) #7	CDCA3 (ENSCAFG00845027345) #8	GNB3 (ENSCAFG00845027447) #9	P3H3 (ENSCAFG00845027539) #10	GPR162 (ENSCAFG00845027631) #11	CD4 (ENSCAFG00845027739) #12	LAG3 (ENSCAFG00845027788) #13	PTMS (ENSCAFG00845027847) #14	MLF2 (ENSCAFG00845027898) #15	COPS7A (ENSCAFG00845027958) #16	PIANP (ENSCAFG00845028055) #17	ZNF384 (ENSCAFG00845028247) #18	ENSCAFG00845028378	ACRBP (ENSCAFG00845028419) #20	LPAR5 (ENSCAFG00845028579) #21	CHD4 (ENSCAFG00845028632) #22	NOP2 (ENSCAFG00845028743) #23	IFFO1 (ENSCAFG00845028853) #24	GAPDH (ENSCAFG00845028918) #25	NCAPD2 (ENSCAFG00845028959) #26	MRPL51 (ENSCAFG00845029018) #27	VAMP1 (ENSCAFG00845029081) #28	TAPBPL (ENSCAFG00845029155) #29	CD27 (ENSCAFG00845029234) #30	LTBR (ENSCAFG00845029256) #31	SCNN1A (ENSCAFG00845029331) #32	ENSCAFG00845029433 #33	PLEKHG6 (ENSCAFG00845029568) #34	CD9 (ENSCAFG00845029613) #35	VWF (ENSCAFG00845029798) #36	ANO2 (ENSCAFG00845030210) #37
Eulipotyphla	ANCESTRAL SPECIES	186																ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.b ##25	ENSGT00940000153566.a #26
Common shrew	MODERN SPECIES	885																ENSSARG00000012988 #22
Hedgehog	MODERN SPECIES	490																ENSEEUG00000011777 #22	NOP2 (ENSEEUG00000011692) #23	IFFO1 (ENSEEUG00000011508) #24	GAPDH (ENSEEUG00000011444) ##25	ENSEEUG00000011280 #26
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Xenarthra	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01030000234816 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00390000007725.A.a
Armadillo	MODERN SPECIES	508	USP5 (ENSDNOG00000002211) #7	CDCA3 (ENSDNOG00000044971) #8	GNB3 (ENSDNOG00000036546) #9	P3H3 (ENSDNOG00000036097) #10	GPR162 (ENSDNOG00000039746) #11	CD4 (ENSDNOG00000002205) #12	LAG3 (ENSDNOG00000002426) #13	PTMS (ENSDNOG00000024120) #14	ENSDNOG00000000758 #15	COPS7A (ENSDNOG00000001998) #16	PIANP (ENSDNOG00000037888) #17	ZNF384 (ENSDNOG00000003936) #18	ING4 (ENSDNOG00000041413) #19	ACRBP (ENSDNOG00000042457) #20	LPAR5 (ENSDNOG00000045302) #21	CHD4 (ENSDNOG00000001134) #22	NOP2 (ENSDNOG00000001133) #23	IFFO1 (ENSDNOG00000036248) #24	ENSDNOG00000038191 ##25	NCAPD2 (ENSDNOG00000001128) #26	MRPL51 (ENSDNOG00000001127) #27	VAMP1 (ENSDNOG00000001131) #28	TAPBPL (ENSDNOG00000035668) #29	CD27 (ENSDNOG00000035400) #30	LTBR (ENSDNOG00000047421) #31	SCNN1A (ENSDNOG00000036126) #32	TNFRSF1A (ENSDNOG00000006656) #33	PLEKHG6 (ENSDNOG00000006637) #34	CD9 (ENSDNOG00000006191) #35	ENSDNOG00000035788 #36
Sloth	MODERN SPECIES	1105																CHD4 (ENSCHOG00000000277) #22
Afrotheria	ANCESTRAL SPECIES	11	ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343.a #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Tenrec	MODERN SPECIES	1332															LPAR5 (ENSETEG00000005915) #21	CHD4 (ENSETEG00000005912) #22	NOP2 (ENSETEG00000005909) #23
Afrotheria_a	ANCESTRAL SPECIES	11	ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343.a #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.n #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Hyrax	MODERN SPECIES	212																CHD4 (ENSPCAG00000007120) #22	NOP2 (ENSPCAG00000007033) #23	IFFO1 (ENSPCAG00000006972) #24	GAPDH (ENSPCAG00000006928) #25	NCAPD2 (ENSPCAG00000006779) #26
Elephant	MODERN SPECIES	108	TPI1 (ENSLAFG00000032143)	USP5 (ENSLAFG00000006569) #7	ENSLAFG00000006567 #8	GNB3 (ENSLAFG00000006559) #9	P3H3 (ENSLAFG00000006551) #10	GPR162 (ENSLAFG00000022632) #11	CD4 (ENSLAFG00000029166) #12	LAG3 (ENSLAFG00000032271) #13	MLF2 (ENSLAFG00000013649) #15	COPS7A (ENSLAFG00000004634) #16	PIANP (ENSLAFG00000025728) #17	ZNF384 (ENSLAFG00000008381) #18	ING4 (ENSLAFG00000008379) #19	ACRBP (ENSLAFG00000008377) #20	LPAR5 (ENSLAFG00000022468) #21	CHD4 (ENSLAFG00000022842) #22	NOP2 (ENSLAFG00000002784) #23	IFFO1 (ENSLAFG00000002782) #24	ENSLAFG00000002780 #25	NCAPD2 (ENSLAFG00000016117) #26	MRPL51 (ENSLAFG00000002106) #27	VAMP1 (ENSLAFG00000002104) #28	TAPBPL (ENSLAFG00000016109) #29	CD27 (ENSLAFG00000021608) #30	LTBR (ENSLAFG00000029559) #31	SCNN1A (ENSLAFG00000000723) #32	TNFRSF1A (ENSLAFG00000017153) #33	PLEKHG6 (ENSLAFG00000021440) #34	CD9 (ENSLAFG00000027050) #35	VWF (ENSLAFG00000002327) #36	ANO2 (ENSLAFG00000002320) #37
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00390000013354.d	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.b ##25	ENSGT00940000153298.m.b.a.a.g ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Opossum	MODERN SPECIES	7	ENSMODG00000018151	USP5 (ENSMODG00000018148) #7	ENSMODG00000018146 #8	GNB3 (ENSMODG00000018145) #9	P3H3 (ENSMODG00000018141) #10	GPR162 (ENSMODG00000040272) #11	CD4 (ENSMODG00000027359) #12	ENSMODG00000018136 #13	MLF2 (ENSMODG00000018113) #15	COPS7A (ENSMODG00000018110) #16	PIANP (ENSMODG00000018107) #17	ZNF384 (ENSMODG00000018105) #18	ING4 (ENSMODG00000018103) #19	ENSMODG00000018101 #20	LPAR5 (ENSMODG00000018099) #21	CHD4 (ENSMODG00000018094) #22	NOP2 (ENSMODG00000018077) #23	ENSMODG00000018067 #24	ENSMODG00000018066 ##25	NCAPD2 (ENSMODG00000018064) #26	MRPL51 (ENSMODG00000018063) #27	ENSMODG00000018060 #30	LTBR (ENSMODG00000018059) #31	ENSMODG00000048629 #32	ENSMODG00000037213 #32	ENSMODG00000018056 #33	PLEKHG6 (ENSMODG00000018054) #34	ENSMODG00000018053 #35	ANO2 (ENSMODG00000018017) #37	NTF3 (ENSMODG00000018011)	KCNA5 (ENSMODG00000024849)
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01050000246306	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.b ##25	ENSGT00940000153298.m.b.a.a.g ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37
Diprotodontia	ANCESTRAL SPECIES	16	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01050000246306	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.g ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37	ENSGT00390000007725.A.a
Diprotodontia_a	ANCESTRAL SPECIES	18	ENSGT00940000156036 #7	ENSGT00390000017343.q #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01050000246306	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.g ##25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00510000049297 #30	ENSGT00940000162178 #31	ENSGT00940000160952 #32	ENSGT00940000159540 #33	ENSGT00940000161250 #34	ENSGT00940000155083.b.e #35	ENSGT00940000155810 #36	ENSGT00940000155840.C #37	ENSGT00390000007725.A.a
koala	MODERN SPECIES	56	ENSPCIG00000002395 #8	USP5 (ENSPCIG00000002410) #7	GNB3 (ENSPCIG00000002089) #9	P3H3 (ENSPCIG00000002057) #10	GPR162 (ENSPCIG00000034794) #11	ENSPCIG00000002019 #12	ENSPCIG00000002003 #13	ENSPCIG00000032253	MLF2 (ENSPCIG00000001988) #15	COPS7A (ENSPCIG00000001977) #16	PIANP (ENSPCIG00000001968) #17	ZNF384 (ENSPCIG00000001942) #18	ING4 (ENSPCIG00000001929) #19	ENSPCIG00000001915 #20	LPAR5 (ENSPCIG00000001908) #21	CHD4 (ENSPCIG00000001846) #22	NOP2 (ENSPCIG00000001788) #23	ENSPCIG00000033646 #24	ENSPCIG00000008527 ##25	NCAPD2 (ENSPCIG00000013026) #26	MRPL51 (ENSPCIG00000013024) #27	VAMP1 (ENSPCIG00000001751) #28	ENSPCIG00000001727 #30	ENSPCIG00000036806	ENSPCIG00000001193 #32	ENSPCIG00000001174 #33	PLEKHG6 (ENSPCIG00000033584) #34	ENSPCIG00000011779 #35	VWF (ENSPCIG00000011924) #36	ANO2 (ENSPCIG00000031141) #37	NTF3 (ENSPCIG00000023966)
Common wonbat	MODERN SPECIES	1112	USP5 (ENSVURG00010001824) #7	ENSVURG00010001810 #8	GNB3 (ENSVURG00010001792) #9	P3H3 (ENSVURG00010001768) #10	GPR162 (ENSVURG00010001748) #11	ENSVURG00010001730 #12	ENSVURG00010001711 #13	ENSVURG00010001702	MLF2 (ENSVURG00010001688) #15	COPS7A (ENSVURG00010001667) #16	PIANP (ENSVURG00010001647) #17	ZNF384 (ENSVURG00010001621) #18	ING4 (ENSVURG00010001569) #19	ENSVURG00010001533 #20	LPAR5 (ENSVURG00010001516) #21	CHD4 (ENSVURG00010000831) #22	NOP2 (ENSVURG00010000599) #23	IFFO1 (ENSVURG00010000540) #24
Wallaby	MODERN SPECIES	1054																CHD4 (ENSMEUG00000015294) #22	NOP2 (ENSMEUG00000015287) #23	IFFO1 (ENSMEUG00000015279) #24	GAPDH (ENSMEUG00000015273) ##25	NCAPD2 (ENSMEUG00000015256) #26	MRPL51 (ENSMEUG00000015252) #27	VAMP1 (ENSMEUG00000015246) #28	ENSMEUG00000015238 #30	ENSMEUG00000015225 #29
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000031703 #8	USP5 (ENSSHAG00000016035) #7	GNB3 (ENSSHAG00000016006) #9	P3H3 (ENSSHAG00000015960) #10	GPR162 (ENSSHAG00000015934) #11	ENSSHAG00000015840 #12	ENSSHAG00000015690 #13	ENSSHAG00000024269	MLF2 (ENSSHAG00000028020) #15	COPS7A (ENSSHAG00000015469) #16	PIANP (ENSSHAG00000015440) #17	ZNF384 (ENSSHAG00000025785) #18	ING4 (ENSSHAG00000015278) #19	LPAR5 (ENSSHAG00000015208) #21	ENSSHAG00000015251 #20	ENSSHAG00000015079 #22	ENSSHAG00000031410	IFFO1 (ENSSHAG00000027937) #24	ENSSHAG00000014953 ##25	NCAPD2 (ENSSHAG00000014814) #26	ENSSHAG00000029190 #27	ENSSHAG00000014740 #30	LTBR (ENSSHAG00000028116) #31	SCNN1A (ENSSHAG00000014354) #32	PLEKHG6 (ENSSHAG00000014065) #34	CD9 (ENSSHAG00000013749) #35	VWF (ENSSHAG00000012094) #36	ENSSHAG00000026710	ANO2 (ENSSHAG00000030277) #37	NTF3 (ENSSHAG00000006721)	KCNA5 (ENSSHAG00000011548)
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000027940	ENSSHAG00000011360	PDS5B (ENSSHAG00000012281)	ENSSHAG00000030187	KL (ENSSHAG00000004604)	STARD13 (ENSSHAG00000006090)	RFC3 (ENSSHAG00000012696)	MAB21L1 (ENSSHAG00000028852)	NBEA (ENSSHAG00000001274)	DCLK1 (ENSSHAG00000010588)	SOHLH2 (ENSSHAG00000013234)	CCDC169 (ENSSHAG00000013972)	ENSSHAG00000013973	ENSSHAG00000014382	ENSSHAG00000017174	ENSSHAG00000022458 #22	ENSSHAG00000026547	NMI (ENSSHAG00000018439)	TNFAIP6 (ENSSHAG00000022583)	RIF1 (ENSSHAG00000018552)	NEB (ENSSHAG00000018591)	CACNB4 (ENSSHAG00000026802)	STAM2 (ENSSHAG00000029280)	FMNL2 (ENSSHAG00000005004)	PRPF40A (ENSSHAG00000009029)	ARL6IP6 (ENSSHAG00000028317)	RPRM (ENSSHAG00000025986)	GALNT13 (ENSSHAG00000031696)	KCNJ3 (ENSSHAG00000032170)	ENSSHAG00000032207	NR4A2 (ENSSHAG00000012981)
Platypus	MODERN SPECIES	87	SPSB2 (ENSOANG00000039691)	TPI1 (ENSOANG00000042133)	USP5 (ENSOANG00000040189) #7	ENSOANG00000042014	GNB3 (ENSOANG00000009941) #9	P3H3 (ENSOANG00000041812) #10	GPR162 (ENSOANG00000035991) #11	PTMS (ENSOANG00000045022) #14	MLF2 (ENSOANG00000003857) #15	COPS7A (ENSOANG00000003858) #16	PIANP (ENSOANG00000037079) #17	ZNF384 (ENSOANG00000040010) #18	ING4 (ENSOANG00000036657) #19	ENSOANG00000037768 #20	LPAR5 (ENSOANG00000050733) #21	CHD4 (ENSOANG00000015700) #22	NOP2 (ENSOANG00000047605) #23	ENSOANG00000043432 #24	NCAPD2 (ENSOANG00000003013) #26	MRPL51 (ENSOANG00000003012) #27	ENSOANG00000038559 #28	ENSOANG00000007602 #29	ENSOANG00000039739 #31	SCNN1A (ENSOANG00000001688) #32	ENSOANG00000044825 #33	ENSOANG00000038811 #34	CD9 (ENSOANG00000048710) #35	GAPDH (ENSOANG00000004492) #25	VWF (ENSOANG00000040443) #36	ANO2 (ENSOANG00000036505) #37	NTF3 (ENSOANG00000001146)
Sauria	ANCESTRAL SPECIES	49	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000180930	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32
Lepidosauria	ANCESTRAL SPECIES	65	ENSGT00940000156036 #7	ENSGT00940000168539	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00940000168928	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000180930	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000153255	ENSGT01090000260044.D.i	ENSGT00440000033697	ENSGT00940000168148	ENSGT00940000156657	ENSGT00940000157383	ENSGT00950000183106.a.b
tuatara	MODERN SPECIES	1253	PTPN6 (ENSSPUG00000014486)	ATN1 (ENSSPUG00000014541)	ENO2 (ENSSPUG00000014585)	LRRC23 (ENSSPUG00000014664)	TPI1 (ENSSPUG00000014685)	USP5 (ENSSPUG00000014695) #7	ENSSPUG00000014712	GNB3 (ENSSPUG00000014719) #9	ENSSPUG00000014840 #12	MLF2 (ENSSPUG00000014850) #15	COPS7A (ENSSPUG00000014867) #16	ZNF384 (ENSSPUG00000014935) #18	ING4 (ENSSPUG00000014965) #19	ENSSPUG00000014998	LPAR5 (ENSSPUG00000015098) #21	CHD4 (ENSSPUG00000015131) #22	NOP2 (ENSSPUG00000015240) #23	IFFO1 (ENSSPUG00000015263) #24	GAPDH (ENSSPUG00000015279) #25	NCAPD2 (ENSSPUG00000015362) #26	ENSSPUG00000015391	MRPL51 (ENSSPUG00000015396) #27	VAMP1 (ENSSPUG00000015408) #28	SCNN1A (ENSSPUG00000015425) #32	VTCN1 (ENSSPUG00000015444)	TRIM45 (ENSSPUG00000015481)	ENSSPUG00000015490	ENSSPUG00000015502	KIF21B (ENSSPUG00000015766)
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00940000168539	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00990000211157	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000153255	ENSGT01090000260044.D.i.a.a	ENSGT01100000263477.C	ENSGT00440000033697	ENSGT00940000168148	ENSGT00940000156657	ENSGT00940000157383	ENSGT00950000183106.a.b
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00950000182805.a.a.b.a	ENSGT00940000159748	ENSGT01030000236833	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00990000211157	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000153255	ENSGT01090000260044.D.i.a.a	ENSGT01100000263477.C	ENSGT00440000033697	ENSGT00940000156657	ENSGT00940000157383	ENSGT00950000183106.a.b	ENSGT00940000154273.a
Elapidae	ANCESTRAL SPECIES	28	ENSGT00940000153615.a.b	ENSGT00950000182805.a.a.b.a	ENSGT00940000159748	ENSGT01030000236833	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00940000168928	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.e #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT01090000260044.D.i.a.b	ENSGT00940000153255	ENSGT01090000260044.D.i.a.a.b	ENSGT00440000033697
Elapidae_a	ANCESTRAL SPECIES	47	ENSGT00940000159748	ENSGT00390000013354.c.a.a	ENSGT00940000156036 #7	ENSGT00940000168539	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00940000168928	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.e #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT01090000260044.D.i.a.b	ENSGT01090000260044.D.i.a.a.a
Acanthophiinae	ANCESTRAL SPECIES	44	ENSGT00940000159748	ENSGT00390000013354.c.a.a	ENSGT00940000156036 #7	ENSGT00940000168539	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00940000168928	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033.e #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT01090000260044.D.i.a.b	ENSGT01090000260044.D.i.a.a.a
Mainland tiger snake	MODERN SPECIES	384												ZNF384 (ENSNSUG00000018710) #18	ENSNSUG00000018709 #19	ENSNSUG00000018703 #20	LPAR5 (ENSNSUG00000018702) #21	CHD4 (ENSNSUG00000015782) #22	NOP2 (ENSNSUG00000015753) #23	IFFO1 (ENSNSUG00000015752) #24	GAPDH (ENSNSUG00000015751) #25	NCAPD2 (ENSNSUG00000015749) #26	MRPL51 (ENSNSUG00000015748) #27	VAMP1 (ENSNSUG00000015747) #28	SCNN1A (ENSNSUG00000015746) #32	ENSNSUG00000015745
Eastern brown snake	MODERN SPECIES	59	ENO2 (ENSPTXG00000014244)	LRRC23 (ENSPTXG00000014239)	TPI1 (ENSPTXG00000014237)	USP5 (ENSPTXG00000014234) #7	ENSPTXG00000014233	GNB3 (ENSPTXG00000014230) #9	P3H3 (ENSPTXG00000014225) #10	GPR162 (ENSPTXG00000014224) #11	MLF2 (ENSPTXG00000014223) #15	COPS7A (ENSPTXG00000014221) #16	PIANP (ENSPTXG00000014220) #17	ZNF384 (ENSPTXG00000014216) #18	ING4 (ENSPTXG00000019084) #19	ACRBP (ENSPTXG00000019083) #20	LPAR5 (ENSPTXG00000019079) #21	CHD4 (ENSPTXG00000017528) #22	NOP2 (ENSPTXG00000017361) #23	IFFO1 (ENSPTXG00000017355) #24	GAPDH (ENSPTXG00000017354) #25	NCAPD2 (ENSPTXG00000017352) #26	MRPL51 (ENSPTXG00000017351) #27	VAMP1 (ENSPTXG00000017350) #28	SCNN1A (ENSPTXG00000017340) #32	ENSPTXG00000017337	ENSPTXG00000017335	ENSPTXG00000017333	ENSPTXG00000017330
Blue-lipped sea krait	MODERN SPECIES	7556																CHD4 (ENSLLTG00000010750) #22	NOP2 (ENSLLTG00000010661) #23	IFFO1 (ENSLLTG00000010640) #24	GAPDH (ENSLLTG00000010621) #25
Indian cobra	MODERN SPECIES	1	ENSNNAG00000014227	USP5 (ENSNNAG00000014250) #7	ENSNNAG00000014319	GNB3 (ENSNNAG00000014368) #9	P3H3 (ENSNNAG00000014400) #10	GPR162 (ENSNNAG00000014481) #11	ENSNNAG00000014513	ENSNNAG00000014534	MLF2 (ENSNNAG00000014552) #15	COPS7A (ENSNNAG00000014570) #16	ZNF384 (ENSNNAG00000014615) #18	ENSNNAG00000014706 #19	ENSNNAG00000014716 #20	ENSNNAG00000014724 #19	LPAR5 (ENSNNAG00000014754) #21	CHD4 (ENSNNAG00000014801) #22	NOP2 (ENSNNAG00000015292) #23	IFFO1 (ENSNNAG00000015319) #24	GAPDH (ENSNNAG00000015325) #25	NCAPD2 (ENSNNAG00000015351) #26	MRPL51 (ENSNNAG00000015367) #27	VAMP1 (ENSNNAG00000015372) #28	SCNN1A (ENSNNAG00000015407) #32	ENSNNAG00000015485	ENSNNAG00000015489	ENSNNAG00000015497	ENSNNAG00000015502	ENSNNAG00000015536	ENSNNAG00000015627	ENSNNAG00000015647	ENSNNAG00000015679
Lizard	MODERN SPECIES	994											PIANP (ENSACAG00000006078) #17	ZNF384 (ENSACAG00000006099) #18	ING4 (ENSACAG00000006150) #19	ENSACAG00000006209 #20	LPAR5 (ENSACAG00000006228) #21	CHD4 (ENSACAG00000006231) #22	NOP2 (ENSACAG00000006397) #23	IFFO1 (ENSACAG00000006451) #24	GAPDH (ENSACAG00000006502) #25	NCAPD2 (ENSACAG00000006580) #26	MRPL51 (ENSACAG00000042185) #27	VAMP1 (ENSACAG00000006678) #28	ENSACAG00000006704 #32	ENSACAG00000035988	ENSACAG00000034747	ENSACAG00000045492	ENSACAG00000006850	ENSACAG00000038456	ENSACAG00000042900	ENSACAG00000038435	ENSACAG00000036395
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000156036 #7	ENSGT00940000168539	ENSGT01000000214413.b.a.b.a.d #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00990000211157	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT01090000260044.D.i.a.a	ENSGT01100000263477.C	ENSGT00440000033697	ENSGT00940000168148	ENSGT00940000156657	ENSGT00940000157383	ENSGT00950000183106.a.b	ENSGT00940000154273.a
Common wall lizard	MODERN SPECIES	8	P3H3 (ENSPMRG00000018283) #10	GPR162 (ENSPMRG00000018296) #11	ENSPMRG00000018312	LAG3 (ENSPMRG00000018333) #13	MLF2 (ENSPMRG00000018362) #15	ENSPMRG00000018406	COPS7A (ENSPMRG00000018410) #16	PIANP (ENSPMRG00000018419) #17	ZNF384 (ENSPMRG00000018429) #18	ENSPMRG00000018449	ING4 (ENSPMRG00000018462) #19	ENSPMRG00000018471	ENSPMRG00000018478	LPAR5 (ENSPMRG00000018488) #21	ENSPMRG00000018490	CHD4 (ENSPMRG00000018512) #22	GAPDH (ENSPMRG00000018588) #25	NOP2 (ENSPMRG00000018604) #23	IFFO1 (ENSPMRG00000018615) #24	NCAPD2 (ENSPMRG00000018629) #26	SCNN1A (ENSPMRG00000018663) #32	ENSPMRG00000018676	ENSPMRG00000018681	ENSPMRG00000020812	ENSPMRG00000020822	ENSPMRG00000020830	ENSPMRG00000020838	ENSPMRG00000020843	ENSPMRG00000020848	ENSPMRG00000020851	ENSPMRG00000020856
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	5	EXOC3 (ENSSMRG00000009917)	COBL (ENSSMRG00000009914)	GRB10 (ENSSMRG00000009908)	DDC (ENSSMRG00000009907)	ENSSMRG00000009900	IKZF1 (ENSSMRG00000009897)	ENSSMRG00000009894	ENSSMRG00000009881	ENSSMRG00000009878	ENSSMRG00000009876	ENSSMRG00000009875	ENSSMRG00000009873	VWC2 (ENSSMRG00000009871)	ENSSMRG00000009858	ENSSMRG00000009857	ENSSMRG00000009837 #22	UPP1 (ENSSMRG00000009832)	ENSSMRG00000009828	C7orf57 (ENSSMRG00000009814)	SUN3 (ENSSMRG00000009790)	HUS1 (ENSSMRG00000009789)	ENSSMRG00000009787	TNS3 (ENSSMRG00000009768)	ENSSMRG00000009738	IGFBP3 (ENSSMRG00000009731)	IGFBP1 (ENSSMRG00000009730)	ADCY1 (ENSSMRG00000009729)
Argentine black and white tegu	MODERN SPECIES	45	ENSSMRG00000019122	GNB3 (ENSSMRG00000019120) #9	P3H3 (ENSSMRG00000019119) #10	GPR162 (ENSSMRG00000019118) #11	ENSSMRG00000019114	ENSSMRG00000019113	MLF2 (ENSSMRG00000019112) #15	ENSSMRG00000019111	COPS7A (ENSSMRG00000019110) #16	PIANP (ENSSMRG00000019109) #17	ZNF384 (ENSSMRG00000019107) #18	ING4 (ENSSMRG00000019106) #19	ENSSMRG00000019105 #20	ENSSMRG00000019103	LPAR5 (ENSSMRG00000019102) #21	CHD4 (ENSSMRG00000011880) #22	NOP2 (ENSSMRG00000011771) #23	IFFO1 (ENSSMRG00000011735) #24	GAPDH (ENSSMRG00000011286) #25	NCAPD2 (ENSSMRG00000011275) #26	MRPL51 (ENSSMRG00000011274) #27	VAMP1 (ENSSMRG00000011272) #28	SCNN1A (ENSSMRG00000011262) #32	ENSSMRG00000011255	DUSP12 (ENSSMRG00000011206)	ENSSMRG00000011202	ADGRL3 (ENSSMRG00000011162)	SYCE3 (ENSSMRG00000011083)	STYK1 (ENSSMRG00000011080)	FBXO40 (ENSSMRG00000011079)	KPNA1 (ENSSMRG00000011078)
Archelosauria	ANCESTRAL SPECIES	30	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000180930	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Cryptodira	ANCESTRAL SPECIES		ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000180930	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596.j
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00940000159654	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821.w #27	ENSGT00940000180930	ENSGT00390000018821.x #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Emydidae	ANCESTRAL SPECIES	57	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT00940000168928	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00940000159654	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00390000018821.x #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717.b
painted turtle	MODERN SPECIES	920			ENSCPBG00000027681 #9	P3H3 (ENSCPBG00000027684) #10	GPR162 (ENSCPBG00000027687) #11	ENSCPBG00000027689 #12	ENSCPBG00000027692	MLF2 (ENSCPBG00000027696) #15	COPS7A (ENSCPBG00000027700) #16	PIANP (ENSCPBG00000027702) #17	ZNF384 (ENSCPBG00000027704) #18	ING4 (ENSCPBG00000027709) #19	ACRBP (ENSCPBG00000027712) #20	ENSCPBG00000027713	LPAR5 (ENSCPBG00000027715) #21	CHD4 (ENSCPBG00000027716) #22	NOP2 (ENSCPBG00000027725) #23	IFFO1 (ENSCPBG00000027730) #24	GAPDH (ENSCPBG00000027732) #25	ENSCPBG00000000417 #27	VAMP1 (ENSCPBG00000000451) #28	SCNN1A (ENSCPBG00000000498) #32	FBXO40 (ENSCPBG00000000558)	KPNA1 (ENSCPBG00000000593)	FAM162A (ENSCPBG00000000645)	ENSCPBG00000000668	MIX23 (ENSCPBG00000000693)	ENSCPBG00000000710
Three-toed box turtle	MODERN SPECIES	357	ENSTMTG00000008609	GNB3 (ENSTMTG00000008647) #9	P3H3 (ENSTMTG00000008695) #10	GPR162 (ENSTMTG00000008765) #11	ENSTMTG00000008800	ENSTMTG00000003376 #13	ENSTMTG00000003450	MLF2 (ENSTMTG00000003474) #15	COPS7A (ENSTMTG00000003508) #16	PIANP (ENSTMTG00000003558) #17	ZNF384 (ENSTMTG00000003676) #18	ING4 (ENSTMTG00000003702) #19	ACRBP (ENSTMTG00000003723) #20	ENSTMTG00000003778	LPAR5 (ENSTMTG00000003957) #21	CHD4 (ENSTMTG00000003980) #22	NOP2 (ENSTMTG00000004069) #23	IFFO1 (ENSTMTG00000004114) #24	GAPDH (ENSTMTG00000004141) #25	MRPL51 (ENSTMTG00000004280) #27	VAMP1 (ENSTMTG00000004297) #28	SCNN1A (ENSTMTG00000004309) #32	FBXO40 (ENSTMTG00000004340)	KPNA1 (ENSTMTG00000004353)	FAM162A (ENSTMTG00000004416)	MIX23 (ENSTMTG00000004437)	ENSTMTG00000004451
Testudinidae	ANCESTRAL SPECIES		ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00940000169199	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00390000018821.w #27	ENSGT00940000180930	ENSGT00390000018821.x #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000165953	ENSGT00940000155717
Abingdon island giant tortoise	MODERN SPECIES	151	USP5 (ENSCABG00000012057) #7	ENSCABG00000012050	GNB3 (ENSCABG00000012032) #9	ENSCABG00000012031 #9	P3H3 (ENSCABG00000012030) #10	ENSCABG00000011952 #12	ENSCABG00000011937 #13	MLF2 (ENSCABG00000011913) #15	COPS7A (ENSCABG00000011840) #16	PIANP (ENSCABG00000011787) #17	ZNF384 (ENSCABG00000011769) #18	ING4 (ENSCABG00000011761) #19	ACRBP (ENSCABG00000011760) #20	ENSCABG00000011633	LPAR5 (ENSCABG00000011614) #21	CHD4 (ENSCABG00000010094) #22	NOP2 (ENSCABG00000010042) #23	IFFO1 (ENSCABG00000010034) #24
Chinese turtle	MODERN SPECIES	1166	TPI1 (ENSPSIG00000013373)	USP5 (ENSPSIG00000013620) #7	GNB3 (ENSPSIG00000014105) #9	P3H3 (ENSPSIG00000014258) #10	GPR162 (ENSPSIG00000014547) #11	ENSPSIG00000014631 #12	ENSPSIG00000014771 #13	MLF2 (ENSPSIG00000014808) #15	COPS7A (ENSPSIG00000015085) #16	PIANP (ENSPSIG00000015128) #17	ENSPSIG00000015173 #18	ING4 (ENSPSIG00000015200) #19	ACRBP (ENSPSIG00000015272) #20	ENSPSIG00000015498	LPAR5 (ENSPSIG00000001680) #21	CHD4 (ENSPSIG00000015546) #22	NOP2 (ENSPSIG00000016127) #23	IFFO1 (ENSPSIG00000016191) #24	GAPDH (ENSPSIG00000016258) #25	NCAPD2 (ENSPSIG00000016447) #26	MRPL51 (ENSPSIG00000016487) #27	ENSPSIG00000016512	SCNN1A (ENSPSIG00000016541) #32	FBXO40 (ENSPSIG00000016880)	KPNA1 (ENSPSIG00000016887)	FAM162A (ENSPSIG00000016970)	MIX23 (ENSPSIG00000016987)	ENSPSIG00000016991	CSTA (ENSPSIG00000017000)
Archosauria	ANCESTRAL SPECIES	2	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Australian saltwater crocodile	MODERN SPECIES	60	ENSCPRG00005005596	GNB3 (ENSCPRG00005005605) #9	P3H3 (ENSCPRG00005005662) #10	GPR162 (ENSCPRG00005005667) #11	ENSCPRG00005005677	ENSCPRG00005005769	ENSCPRG00005005775	MLF2 (ENSCPRG00005005783) #15	COPS7A (ENSCPRG00005005800) #16	PIANP (ENSCPRG00005005804) #17	ZNF384 (ENSCPRG00005005809) #18	ING4 (ENSCPRG00005005824) #19	ENSCPRG00005005847	ENSCPRG00005005863	LPAR5 (ENSCPRG00005005932) #21	CHD4 (ENSCPRG00005006161) #22	NOP2 (ENSCPRG00005007691) #23	IFFO1 (ENSCPRG00005007699) #24	GAPDH (ENSCPRG00005007744) #25	GAPDHS (ENSCPRG00005007750)	LSR (ENSCPRG00005007774)	MAG (ENSCPRG00005007802)	ENSCPRG00005007821	ENSCPRG00005007828	NCAPD2 (ENSCPRG00005007847) #26	MRPL51 (ENSCPRG00005008007) #27	ENSCPRG00005008010	VAMP1 (ENSCPRG00005008021) #28	SCNN1A (ENSCPRG00005008027) #32	TAPBPL (ENSCPRG00005008048) #29	TTL (ENSCPRG00005008072)
Aves	ANCESTRAL SPECIES		ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00990000212708	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
African ostrich	MODERN SPECIES	972	GPR162 (ENSSCUG00000017907) #11	ENSSCUG00000017905 #12	ENSSCUG00000017902	ENSSCUG00000017901	MLF2 (ENSSCUG00000017898) #15	ENSSCUG00000017897	COPS7A (ENSSCUG00000017895) #16	PIANP (ENSSCUG00000017894) #17	ENSSCUG00000017892	ZNF384 (ENSSCUG00000017890) #18	ING4 (ENSSCUG00000017887) #19	ACRBP (ENSSCUG00000017885) #20	ENSSCUG00000017884	ENSSCUG00000017883	LPAR5 (ENSSCUG00000017882) #21	CHD4 (ENSSCUG00000017880) #22	NOP2 (ENSSCUG00000017879) #23	IFFO1 (ENSSCUG00000017877) #24	GAPDH (ENSSCUG00000017876) #25	ENSSCUG00000017875	ENSSCUG00000017873	NCAPD2 (ENSSCUG00000017870) #26	VAMP1 (ENSSCUG00000017868) #28	ENSSCUG00000017860 #32	TAPBPL (ENSSCUG00000017852) #29	FBXO40 (ENSSCUG00000017851)	KPNA1 (ENSSCUG00000017848)	FAM162A (ENSSCUG00000017847)	ENSSCUG00000017845	CSTA (ENSSCUG00000017844)	ENSSCUG00000017842
Neognathae	ANCESTRAL SPECIES	1	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Neognathae_b	ANCESTRAL SPECIES		ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Great tit	MODERN SPECIES		ENSPMJG00000007269	GNB3 (ENSPMJG00000007272) #9	P3H3 (ENSPMJG00000007300) #10	GPR162 (ENSPMJG00000007307) #11	ENSPMJG00000007310 #12	ENSPMJG00000007313	ENSPMJG00000007316	MLF2 (ENSPMJG00000007317) #15	COPS7A (ENSPMJG00000007320) #16	PIANP (ENSPMJG00000007323) #17	ZNF384 (ENSPMJG00000007327) #18	ING4 (ENSPMJG00000007335) #19	ENSPMJG00000007337 #20	ENSPMJG00000007341	LPAR5 (ENSPMJG00000007344) #21	CHD4 (ENSPMJG00000007345) #22	NOP2 (ENSPMJG00000007352) #23	ENSPMJG00000007376 #24	GAPDH (ENSPMJG00000007398) #25	ENSPMJG00000010092 #24	ENSPMJG00000010093	NCAPD2 (ENSPMJG00000010094) #26	MRPL51 (ENSPMJG00000010096) #27	VAMP1 (ENSPMJG00000010097) #28	SCNN1A (ENSPMJG00000010098) #32	FBXO40 (ENSPMJG00000010099)	KPNA1 (ENSPMJG00000010100)	FAM162A (ENSPMJG00000010101)	MIX23 (ENSPMJG00000010102)	ENSPMJG00000010103	CSTB (ENSPMJG00000010104)
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Flycatcher	MODERN SPECIES		ENO2 (ENSFALG00000004665)	LRRC23 (ENSFALG00000004669)	USP5 (ENSFALG00000004685) #7	GNB3 (ENSFALG00000004692) #9	P3H3 (ENSFALG00000004696) #10	GPR162 (ENSFALG00000004699) #11	ENSFALG00000004705 #12	ENSFALG00000004715	ENSFALG00000023328	ENSFALG00000004741 #18	COPS7A (ENSFALG00000027863) #16	PIANP (ENSFALG00000004734) #17	ING4 (ENSFALG00000004756) #19	ACRBP (ENSFALG00000004771) #20	LPAR5 (ENSFALG00000014540) #21	CHD4 (ENSFALG00000004785) #22	NOP2 (ENSFALG00000004797) #23	IFFO1 (ENSFALG00000004808) #24	GAPDH (ENSFALG00000023061) #25	ENSFALG00000004823	NCAPD2 (ENSFALG00000004826) #26	MRPL51 (ENSFALG00000004836) #27	VAMP1 (ENSFALG00000004846) #28	ENSFALG00000004870 #32	ENSFALG00000004892	KPNA1 (ENSFALG00000004916)	ENSFALG00000004944	MIX23 (ENSFALG00000004953)	ENSFALG00000027758	ENSFALG00000004967	ENSFALG00000004975
Passeriformes_g	ANCESTRAL SPECIES	25	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Medium ground finch	MODERN SPECIES	23	TPI1 (ENSGFOG00000013294)	USP5 (ENSGFOG00000013290) #7	GNB3 (ENSGFOG00000013285) #9	P3H3 (ENSGFOG00000013283) #10	GPR162 (ENSGFOG00000013280) #11	ENSGFOG00000013276 #12	ENSGFOG00000013260	ENSGFOG00000013258	MLF2 (ENSGFOG00000013254) #15	COPS7A (ENSGFOG00000013250) #16	PIANP (ENSGFOG00000013247) #17	ZNF384 (ENSGFOG00000013243) #18	ING4 (ENSGFOG00000013241) #19	ACRBP (ENSGFOG00000013235) #20	LPAR5 (ENSGFOG00000013232) #21	CHD4 (ENSGFOG00000002570) #22	NOP2 (ENSGFOG00000001873) #23	IFFO1 (ENSGFOG00000001865) #24	GAPDH (ENSGFOG00000001749) #25	ENSGFOG00000001719	NCAPD2 (ENSGFOG00000001676) #26	MRPL51 (ENSGFOG00000001666) #27	VAMP1 (ENSGFOG00000001664) #28	SCNN1A (ENSGFOG00000001648) #32	FBXO40 (ENSGFOG00000001639)	KPNA1 (ENSGFOG00000001625)	FAM162A (ENSGFOG00000001617)	MIX23 (ENSGFOG00000001601)	CSTA (ENSGFOG00000001450)	CSTB (ENSGFOG00000001425)	CASR (ENSGFOG00000001412)
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826	ENSGT00940000157596
Zebra finch	MODERN SPECIES		ENO2 (ENSTGUG00000013292)	USP5 (ENSTGUG00000013294) #7	CDCA3 (ENSTGUG00000013300) #8	GNB3 (ENSTGUG00000013301) #9	P3H3 (ENSTGUG00000013302) #10	GPR162 (ENSTGUG00000018169) #11	ENSTGUG00000013304 #12	ENSTGUG00000013307	ENSTGUG00000013310 #15	COPS7A (ENSTGUG00000013312) #16	PIANP (ENSTGUG00000023446) #17	ZNF384 (ENSTGUG00000013319) #18	ING4 (ENSTGUG00000013323) #19	ACRBP (ENSTGUG00000013326) #20	LPAR5 (ENSTGUG00000013328) #21	CHD4 (ENSTGUG00000013329) #22	NOP2 (ENSTGUG00000013336) #23	IFFO1 (ENSTGUG00000028638) #24	ENSTGUG00000021208	GAPDH (ENSTGUG00000013338) #25	ENSTGUG00000025317	ENSTGUG00000025583	NCAPD2 (ENSTGUG00000013339) #26	VAMP1 (ENSTGUG00000029109) #28	SCNN1A (ENSTGUG00000013342) #32	FBXO40 (ENSTGUG00000013343)	KPNA1 (ENSTGUG00000013344)	FAM162A (ENSTGUG00000028619)	MIX23 (ENSTGUG00000023858)	CSTB (ENSTGUG00000013347)	CASR (ENSTGUG00000013348)
Common canary	MODERN SPECIES	4	USP5 (ENSSCAG00000011569) #7	GNB3 (ENSSCAG00000011581) #9	P3H3 (ENSSCAG00000011587) #10	GPR162 (ENSSCAG00000011592) #11	ENSSCAG00000011595 #12	ENSSCAG00000011620	ENSSCAG00000011629	MLF2 (ENSSCAG00000011635) #15	COPS7A (ENSSCAG00000011644) #16	PIANP (ENSSCAG00000011676) #17	ZNF384 (ENSSCAG00000011700) #18	ING4 (ENSSCAG00000011701) #19	ENSSCAG00000011706 #20	LPAR5 (ENSSCAG00000011712) #21	ENSSCAG00000011715	CHD4 (ENSSCAG00000012159) #22	ENSSCAG00000014175 #23	IFFO1 (ENSSCAG00000014177) #24	GAPDH (ENSSCAG00000014296) #25	ENSSCAG00000014608	NCAPD2 (ENSSCAG00000014615) #26	MRPL51 (ENSSCAG00000014627) #27	VAMP1 (ENSSCAG00000014630) #28	SCNN1A (ENSSCAG00000014632) #32	FBXO40 (ENSSCAG00000014639)	LRRC23 (ENSSCAG00000014644)	ENO2 (ENSSCAG00000014656)	ATN1 (ENSSCAG00000014678)	C12orf57 (ENSSCAG00000014688)	PTPN6 (ENSSCAG00000014698)	PHB2 (ENSSCAG00000014710)
Neognathae_c	ANCESTRAL SPECIES	4															ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Golden eagle	MODERN SPECIES	23	ENSACCG00020013029	GNB3 (ENSACCG00020013094) #9	P3H3 (ENSACCG00020013136) #10	GPR162 (ENSACCG00020013153) #11	ENSACCG00020013263 #12	ENSACCG00020013369 #13	ENSACCG00020013433	MLF2 (ENSACCG00020013447) #15	COPS7A (ENSACCG00020013469) #16	PIANP (ENSACCG00020013498) #17	ZNF384 (ENSACCG00020013549) #18	ING4 (ENSACCG00020013592) #19	ACRBP (ENSACCG00020013667) #20	ENSACCG00020013696	LPAR5 (ENSACCG00020013710) #21	CHD4 (ENSACCG00020014713) #22	NOP2 (ENSACCG00020015636) #23	IFFO1 (ENSACCG00020015652) #24	GAPDH (ENSACCG00020015661) #25	ENSACCG00020015675	NCAPD2 (ENSACCG00020015694) #26	MRPL51 (ENSACCG00020015731) #27	VAMP1 (ENSACCG00020015750) #28	SCNN1A (ENSACCG00020015809) #32	TAPBPL (ENSACCG00020015886) #29	FBXO40 (ENSACCG00020015916)	KPNA1 (ENSACCG00020015930)	ENSACCG00020015948	MIX23 (ENSACCG00020015971)	CSTA (ENSACCG00020015985)	CSTB (ENSACCG00020015994)
Kakapo	MODERN SPECIES	28	CDCA3 (ENSSHBG00005007275) #8	GNB3 (ENSSHBG00005007225) #9	ENSSHBG00005007197 #10	GPR162 (ENSSHBG00005007180) #11	ENSSHBG00005006346 #12	ENSSHBG00005006239	ENSSHBG00005006180	MLF2 (ENSSHBG00005006148) #15	COPS7A (ENSSHBG00005006120) #16	PIANP (ENSSHBG00005006099) #17	ZNF384 (ENSSHBG00005006044) #18	ING4 (ENSSHBG00005006006) #19	ENSSHBG00005005978	ENSSHBG00005005961	LPAR5 (ENSSHBG00005005929) #21	CHD4 (ENSSHBG00005005796) #22	NOP2 (ENSSHBG00005005753) #23	IFFO1 (ENSSHBG00005000954) #24	GAPDH (ENSSHBG00005000947) #25	ENSSHBG00005000939	NCAPD2 (ENSSHBG00005000924) #26	MRPL51 (ENSSHBG00005009560) #27	VAMP1 (ENSSHBG00005009551) #28	SCNN1A (ENSSHBG00005009530) #32	FBXO40 (ENSSHBG00005009521)	KPNA1 (ENSSHBG00005009510)	FAM162A (ENSSHBG00005009499)	MIX23 (ENSSHBG00005009487)	ENSSHBG00005009467	ENSSHBG00005009455	ATP1A1 (ENSSHBG00005009427)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00940000153675.a.a.b	ENSGT00940000159654	ENSGT00930000151052	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000154826	ENSGT00940000157596	ENSGT00940000161500
Pink-footed goose	MODERN SPECIES	319	ENSABRG00000012516	GNB3 (ENSABRG00000012518) #9	P3H3 (ENSABRG00000012526) #10	GPR162 (ENSABRG00000012527) #11	ENSABRG00000012533 #12	LAG3 (ENSABRG00000012548) #13	ENSABRG00000012557	MLF2 (ENSABRG00000012568) #15	COPS7A (ENSABRG00000012574) #16	PIANP (ENSABRG00000012579) #17	ZNF384 (ENSABRG00000012587) #18	ING4 (ENSABRG00000012599) #19	ACRBP (ENSABRG00000012652) #20	ENSABRG00000012659	LPAR5 (ENSABRG00000012668) #21	CHD4 (ENSABRG00000012671) #22	ENSABRG00000012688	IFFO1 (ENSABRG00000012700) #24	GAPDH (ENSABRG00000012729) #25	NCAPD2 (ENSABRG00000012735) #26	MRPL51 (ENSABRG00000012749) #27	VAMP1 (ENSABRG00000012750) #28	SCNN1A (ENSABRG00000012757) #32	TAPBPL (ENSABRG00000012770) #29
Duck	MODERN SPECIES		TPI1 (ENSAPLG00000004000)	USP5 (ENSAPLG00000003443) #7	GNB3 (ENSAPLG00000003313) #9	P3H3 (ENSAPLG00000002993) #10	GPR162 (ENSAPLG00000028368) #11	LAG3 (ENSAPLG00000002679) #13	ENSAPLG00000000776	MLF2 (ENSAPLG00000002492) #15	COPS7A (ENSAPLG00000001230) #16	PIANP (ENSAPLG00000021371) #17	ZNF384 (ENSAPLG00000015889) #18	ING4 (ENSAPLG00000015791) #19	ENSAPLG00000029811	ENSAPLG00000015437	LPAR5 (ENSAPLG00000001294) #21	CHD4 (ENSAPLG00000014146) #22	NOP2 (ENSAPLG00000020826) #23	IFFO1 (ENSAPLG00000026823) #24	ENSAPLG00000027352	NCAPD2 (ENSAPLG00000013121) #26	MRPL51 (ENSAPLG00000025855) #27	VAMP1 (ENSAPLG00000013048) #28	SCNN1A (ENSAPLG00000012377) #32	TAPBPL (ENSAPLG00000013511) #29	FBXO40 (ENSAPLG00000005334)	KPNA1 (ENSAPLG00000004886)	FAM162A (ENSAPLG00000004872)	ENSAPLG00000020387	FOXJ2 (ENSAPLG00000013506)	C3AR1 (ENSAPLG00000001977)	NECAP1 (ENSAPLG00000013392)
Phasianidae	ANCESTRAL SPECIES		ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT00940000168928	ENSGT00950000185787	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00730000114155	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00950000183204.a	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a.o	ENSGT00390000011053	ENSGT00940000155717	ENSGT00940000154826
Turkey	MODERN SPECIES		ENSMGAG00000013991	MIX23 (ENSMGAG00000013996)	ENSMGAG00000013998	ENSMGAG00000013997	ENSMGAG00000019527	ENSMGAG00000014002 #29	ENSMGAG00000014001	ENSMGAG00000014091 #28	ENSMGAG00000014003 #32	MRPL51 (ENSMGAG00000014092) #27	ENSMGAG00000018438	ENSMGAG00000014095	ENSMGAG00000014081 #24	GAPDH (ENSMGAG00000014005) #25	NOP2 (ENSMGAG00000014082) #23	CHD4 (ENSMGAG00000014084) #22	ING4 (ENSMGAG00000014098) #19	ENSMGAG00000014097 #20	ENSMGAG00000014096 #21	ZNF384 (ENSMGAG00000014101) #18	ENSMGAG00000014103 #17	ENSMGAG00000014106 #16	ENSMGAG00000014109 #15	CD4 (ENSMGAG00000014113) #12	ENSMGAG00000014111	ENSMGAG00000018668	GPR162 (ENSMGAG00000014115) #11	ENSMGAG00000014120 #9	ENSMGAG00000014116 #10	USP5 (ENSMGAG00000014124) #7	ENSMGAG00000020253
Chicken	MODERN SPECIES		CDCA3 (ENSGALG00010023359) #8	GNB3 (ENSGALG00010023351) #9	P3H3 (ENSGALG00010023340) #10	GPR162 (ENSGALG00010023336) #11	CD4 (ENSGALG00010023331) #12	LAG3 (ENSGALG00010023324) #13	ENSGALG00010023320	MLF2 (ENSGALG00010021530) #15	COPS7A (ENSGALG00010021704) #16	PIANP (ENSGALG00010021697) #17	ZNF384 (ENSGALG00010021687) #18	ING4 (ENSGALG00010021674) #19	ACRBP (ENSGALG00010021614) #20	ENSGALG00010021608	LPAR5 (ENSGALG00010021601) #21	CHD4 (ENSGALG00010022093) #22	NOP2 (ENSGALG00010022069) #23	IFFO1 (ENSGALG00010022052) #24	GAPDH (ENSGALG00010022038) #25	CNP1 (ENSGALG00010022017)	NCAPD2 (ENSGALG00010021989) #26	MRPL51 (ENSGALG00010021922) #27	VAMP1 (ENSGALG00010021801) #28	SCNN1A (ENSGALG00010021866) #32	TAPBPL (ENSGALG00010021854) #29	FBXO40 (ENSGALG00010021826)	KPNA1 (ENSGALG00010026081)	FAM162A (ENSGALG00010021786)	CCDC58 (ENSGALG00010021767)	CSTA (ENSGALG00010021760)	CSTB (ENSGALG00010021752)
Japanese quail	MODERN SPECIES		TPI1 (ENSCJPG00005016756)	USP5 (ENSCJPG00005016755) #7	ENSCJPG00005016754	P3H3 (ENSCJPG00005016753) #10	GPR162 (ENSCJPG00005016752) #11	ENSCJPG00005016751 #12	ENSCJPG00005016750	ENSCJPG00005016749	MLF2 (ENSCJPG00005016747) #15	COPS7A (ENSCJPG00005016746) #16	PIANP (ENSCJPG00005016732) #17	ZNF384 (ENSCJPG00005016731) #18	ING4 (ENSCJPG00005016730) #19	ACRBP (ENSCJPG00005016729) #20	LPAR5 (ENSCJPG00005016728) #21	CHD4 (ENSCJPG00005016726) #22	ENSCJPG00005016725	IFFO1 (ENSCJPG00005016720) #24	GAPDH (ENSCJPG00005016719) #25	ENSCJPG00005016718	NCAPD2 (ENSCJPG00005016716) #26	MRPL51 (ENSCJPG00005016715) #27	VAMP1 (ENSCJPG00005016714) #28	SCNN1A (ENSCJPG00005016713) #32	TAPBPL (ENSCJPG00005016712) #29	FBXO40 (ENSCJPG00005016711)	KPNA1 (ENSCJPG00005016710)	FAM162A (ENSCJPG00005016708)	MIX23 (ENSCJPG00005016707)	CSTB (ENSCJPG00005016706)	CASR (ENSCJPG00005016705)
Anura	ANCESTRAL SPECIES	104										ENSGT00940000159540 #33	ENSGT00940000160952 #32	ENSGT00940000160453 #29	ENSGT00390000018821 #27	ENSGT00390000000826.a #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298 #25	ENSGT00940000153566.a #26	ENSGT00940000159033 #19	ENSGT00940000156904 #18	ENSGT01000000218818	ENSGT00510000049460 #17	ENSGT00390000005023.a #15	ENSGT00940000168928	ENSGT01010000229504	ENSGT00390000017213.A #11	ENSGT00390000001652.e	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a #9
Leishan spiny toad	MODERN SPECIES	9	SLIT1 (ENSLLEG00000009277)	ARHGAP19 (ENSLLEG00000009651)	ENSLLEG00000009929	ENSLLEG00000009979	ENSLLEG00000010017	ENSLLEG00000010118	ENSLLEG00000010948	ENSLLEG00000011089	SCNN1A (ENSLLEG00000011175) #32	TAPBPL (ENSLLEG00000011421) #29	ENSLLEG00000011487	MRPL51 (ENSLLEG00000011509) #27	ENSLLEG00000011570 #20	LPAR5 (ENSLLEG00000011710) #21	ENSLLEG00000011744	CHD4 (ENSLLEG00000011789) #22	NOP2 (ENSLLEG00000012191) #23	IFFO1 (ENSLLEG00000012304) #24	ENSLLEG00000012378 #25	NCAPD2 (ENSLLEG00000012569) #26	ING4 (ENSLLEG00000012932) #19	ZNF384 (ENSLLEG00000013153) #18	ENSLLEG00000013203	PIANP (ENSLLEG00000013255) #17	MLF2 (ENSLLEG00000013309) #15	ENSLLEG00000013367	ENSLLEG00000013414	GPR162 (ENSLLEG00000013469) #11	ENSLLEG00000013521	ENSLLEG00000013598	P3H3 (ENSLLEG00000013626) #10
Frog	MODERN SPECIES	7	ENSXETG00000045415	ENSXETG00000043769	ENSXETG00000035607	ENSXETG00000035431	ENSXETG00000038140	ENSXETG00000040694	ENSXETG00000036891	ENSXETG00000037975	ENSXETG00000032606	ENSXETG00000025330	tnfrsf1a (ENSXETG00000032118) #33	scnn1a (ENSXETG00000018954) #32	ltbr (ENSXETG00000044559)	TAPBPL (ENSXETG00000018958) #29	LPAR5 (ENSXETG00000018959) #21	chd4 (ENSXETG00000026410) #22	nop2 (ENSXETG00000011515)	ENSXETG00000026411 ##24	ENSXETG00000049149 #24	gapdh (ENSXETG00000033975) #25	ncapd2 (ENSXETG00000011528) #26	ing4 (ENSXETG00000035975) #19	znf384 (ENSXETG00000011532) #18	XB1017155 [provisional] (ENSXETG00000026414)	pianp (ENSXETG00000031467) #17	ENSXETG00000044747	ENSXETG00000035333	mlf2 (ENSXETG00000011538) #15	cd4 (ENSXETG00000036441)	gpr162 (ENSXETG00000035772) #11	XB5901519 [provisional:tprg1l] (ENSXETG00000043473)
Coelacanth	MODERN SPECIES	1551															LPAR5 (ENSLACG00000004238) #21	CHD4 (ENSLACG00000005963) #22	ENSLACG00000007885 #24	ENSLACG00000008172 #24	ENSLACG00000008712	ENSLACG00000008833	ENSLACG00000008969	MLF2 (ENSLACG00000009586) #15	ENSLACG00000009839	ZNF384 (ENSLACG00000010143) #18	PIANP (ENSLACG00000011197) #17
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Acanthomorphata	ANCESTRAL SPECIES	26				ENSGT00940000163190.g.b	ENSGT00940000163190.h.a.b	ENSGT00940000163190.g.a	ENSGT00940000163346.a	ENSGT01060000248901	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000159249.b	ENSGT00390000005306	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00960000186977	ENSGT00940000154436.d	ENSGT00950000183063.d
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000163346.a.b.a.b.a.a	ENSGT00940000163346.a.b.a.b.a.b	ENSGT01060000248901	ENSGT00940000163346.a.b.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b	ENSGT01060000248901	ENSGT00940000163346.a.b.a.b.a.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b	ENSGT00940000163346.a.a	ENSGT00940000163346.a.b.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00960000186977	ENSGT00940000154436.d	ENSGT00950000183063.d
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183117.a.b.b	ENSGT00390000004933.l	ENSGT00940000154527.a.a.a
Climbing perch	MODERN SPECIES	18	ENSATEG00000025783	ENSATEG00000027807	ENSATEG00000029728	ENSATEG00000026023	ENSATEG00000000606	ENSATEG00000027418	ENSATEG00000026536	ENSATEG00000025920	ENSATEG00000028416	ENSATEG00000000770	ENSATEG00000000825	agtrap (ENSATEG00000000856)	ENSATEG00000000882	ENSATEG00000000942	ENSATEG00000000964	ENSATEG00000000976 #22	ARHGEF10L (ENSATEG00000001356)	igsf21a (ENSATEG00000001481)	KLHDC7A (ENSATEG00000001529)	ENSATEG00000001537	aadacl4 (ENSATEG00000001560)	dhrs3b (ENSATEG00000001586)	ENSATEG00000001628	ephb2b (ENSATEG00000001637)	ENSATEG00000001715	ENSATEG00000001748	ENSATEG00000001845	ENSATEG00000001863	ENSATEG00000001916	ENSATEG00000001964	ENSATEG00000001984
Siamese fighting fish	MODERN SPECIES	16	ilrun (ENSBSLG00000000565)	SPDEF (ENSBSLG00000000578)	pacsin1b (ENSBSLG00000000589)	rps10 (ENSBSLG00000000608)	ENSBSLG00000000620	ENSBSLG00000000627	ENSBSLG00000000644	ENSBSLG00000000666	ENSBSLG00000000673	PANK4 (ENSBSLG00000000709)	draxina (ENSBSLG00000000769)	agtrap (ENSBSLG00000000774)	RNF207 (ENSBSLG00000000785)	ENSBSLG00000000792	ENSBSLG00000000796	ENSBSLG00000000909 #22	ARHGEF10L (ENSBSLG00000001383)	ENSBSLG00000001639	ENSBSLG00000001647	ENSBSLG00000001648	igsf21a (ENSBSLG00000001659)	KLHDC7A (ENSBSLG00000001677)	ENSBSLG00000001688	aadacl4 (ENSBSLG00000001694)	ENSBSLG00000001704	ephb2b (ENSBSLG00000001834)	LACTBL1 (ENSBSLG00000002027)	ENSBSLG00000002028	ENSBSLG00000002029	ENSBSLG00000002030	ENSBSLG00000002031
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000001784	ENSMAMG00000001796	ENSMAMG00000001824	ENSMAMG00000024462	ENSMAMG00000026381	ENSMAMG00000001851	ENSMAMG00000026333	ENSMAMG00000028116	ENSMAMG00000001880	ENSMAMG00000001898	ENSMAMG00000002010	agtrap (ENSMAMG00000002029)	ENSMAMG00000002035	ENSMAMG00000002085	ENSMAMG00000002105	ENSMAMG00000002137 #22	ARHGEF10L (ENSMAMG00000002238)	igsf21a (ENSMAMG00000002315)	KLHDC7A (ENSMAMG00000002350)	ENSMAMG00000002360	aadacl4 (ENSMAMG00000002373)	dhrs3b (ENSMAMG00000002387)	ENSMAMG00000002414	ephb2b (ENSMAMG00000002456)	ENSMAMG00000002526	ENSMAMG00000002555	ENSMAMG00000002618	ENSMAMG00000002647	alpl (ENSMAMG00000002650)	ece1 (ENSMAMG00000002669)	EIF4G3 (ENSMAMG00000002783)
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000153314.b.a.b	ENSGT00940000159249.b.h	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Yellowtail amberjack	MODERN SPECIES	2919	ENSSLDG00000020288	cyp24a1 (ENSSLDG00000020246)	ENSSLDG00000020235	ADORA3 (ENSSLDG00000020227)	ENSSLDG00000020210	ENSSLDG00000020197	si:ch73-21g5.7 (ENSSLDG00000020193)	ENSSLDG00000020173	ENSSLDG00000020158	PANK4 (ENSSLDG00000020098)	draxina (ENSSLDG00000020078)	agtrap (ENSSLDG00000020077)	zpr1 (ENSSLDG00000020074)	RNF207 (ENSSLDG00000019997)	ENSSLDG00000019980	ENSSLDG00000019750 #22	ARHGEF10L (ENSSLDG00000019703)	igsf21a (ENSSLDG00000019670)	KLHDC7A (ENSSLDG00000019652)	ENSSLDG00000019638	aadacl4 (ENSSLDG00000019630)	dhrs3b (ENSSLDG00000019617)	ENSSLDG00000019604	ephb2b (ENSSLDG00000019542)	LACTBL1 (ENSSLDG00000019519)	ENSSLDG00000019508	ENSSLDG00000019499	ENSSLDG00000019489	alpl (ENSSLDG00000019465)	ece1 (ENSSLDG00000019403)	EIF4G3 (ENSSLDG00000018945)
Pleuronectoidei	ANCESTRAL SPECIES	31	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000177901	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Tongue sole	MODERN SPECIES	2	IP6K1 (ENSCSEG00000018505)	ENSCSEG00000018494	ENSCSEG00000018470	ENSCSEG00000018461	arhgef3 (ENSCSEG00000018450)	il17rd (ENSCSEG00000018411)	appl1 (ENSCSEG00000018358)	KLHL10 (ENSCSEG00000018346)	dennd6aa (ENSCSEG00000018306)	PANK4 (ENSCSEG00000018228)	draxina (ENSCSEG00000018207)	agtrap (ENSCSEG00000018196)	zpr1 (ENSCSEG00000018193)	RNF207 (ENSCSEG00000018158)	RPL22 (ENSCSEG00000018142)	ENSCSEG00000018096 #22	ARHGEF10L (ENSCSEG00000018037)	ENSCSEG00000018025	igsf21a (ENSCSEG00000018005)	KLHDC7A (ENSCSEG00000017991)	ENSCSEG00000017976	dhrs3b (ENSCSEG00000017964)	cldn19 (ENSCSEG00000017947)	ENSCSEG00000017860	nucks1a (ENSCSEG00000017838)	ENSCSEG00000017830	fam83c (ENSCSEG00000017826)	WDR1 (ENSCSEG00000017806)	idh3b (ENSCSEG00000017767)	ptpra (ENSCSEG00000017739)	gnrh2 (ENSCSEG00000017724)
Turbot	MODERN SPECIES	18	ENSSMAG00000017566	ENSSMAG00000017603	ENSSMAG00000017676	ENSSMAG00000017707	ENSSMAG00000017721	ENSSMAG00000032921	ENSSMAG00000017776	ENSSMAG00000031156	ENSSMAG00000037522	ENSSMAG00000017114	ENSSMAG00000017786	ENSSMAG00000017860	agtrap (ENSSMAG00000025082)	ENSSMAG00000017899	ENSSMAG00000017872	ENSSMAG00000017926 #22	ENSSMAG00000018032	ENSSMAG00000035408	igsf21a (ENSSMAG00000018140)	aadacl4 (ENSSMAG00000018151)	dhrs3b (ENSSMAG00000018155)	ENSSMAG00000018170	ENSSMAG00000021606	ephb2b (ENSSMAG00000018173)	ENSSMAG00000036650	ENSSMAG00000000788	ENSSMAG00000000799	ENSSMAG00000000812	ENSSMAG00000000821	alpl (ENSSMAG00000000834)	ece1 (ENSSMAG00000001956)
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Tetraodontidae	ANCESTRAL SPECIES	62				ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000163346.a.b.b.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00510000048612	ENSGT00390000005306	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00940000155314.p
Fugu	MODERN SPECIES	10	FLNB (ENSTRUG00000005042)	siat5-r (ENSTRUG00000004801)	ENSTRUG00000004600	pnp4a (ENSTRUG00000004448)	trib3 (ENSTRUG00000020551)	ENSTRUG00000003688	ENSTRUG00000032534	ENSTRUG00000024981	ENSTRUG00000029779	PANK4 (ENSTRUG00000002683)	draxina (ENSTRUG00000002640)	agtrap (ENSTRUG00000022633)	RNF207 (ENSTRUG00000002614)	zpr1 (ENSTRUG00000032549)	rpl22 (ENSTRUG00000007876)	ENSTRUG00000007623 #22	ARHGEF10L (ENSTRUG00000007101)	ENSTRUG00000026397	ENSTRUG00000026478	igsf21a (ENSTRUG00000006952)	KLHDC7A (ENSTRUG00000006930)	dhrs3b (ENSTRUG00000006594)	ENSTRUG00000006571	ephb2b (ENSTRUG00000005498)	LACTBL1 (ENSTRUG00000023247)	ENSTRUG00000005202	ENSTRUG00000025583	ENSTRUG00000019541	alpl (ENSTRUG00000004463)	ece1 (ENSTRUG00000012021)	EIF4G3 (ENSTRUG00000011593)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Ballan wrasse	MODERN SPECIES	54	EOGT (ENSLBEG00000026059)	tmf1 (ENSLBEG00000026101)	uba3 (ENSLBEG00000026172)	ENSLBEG00000026230	PRKCD (ENSLBEG00000026270)	SFMBT1 (ENSLBEG00000026332)	stimate (ENSLBEG00000026380)	mustn1b (ENSLBEG00000026395)	ITIH3 (ENSLBEG00000026409)	ENSLBEG00000026440	gata2a (ENSLBEG00000026468)	rpn1 (ENSLBEG00000026501)	RNF207 (ENSLBEG00000026545)	zpr1 (ENSLBEG00000026605)	ENSLBEG00000026618	ENSLBEG00000026652 #22	ARHGEF10L (ENSLBEG00000026805)	igsf21a (ENSLBEG00000026860)	KLHDC7A (ENSLBEG00000026889)	ENSLBEG00000026896	aadacl4 (ENSLBEG00000026909)	dhrs3b (ENSLBEG00000026925)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
European seabass	MODERN SPECIES	10	ENSDLAG00005023498	st3gal8 (ENSDLAG00005027062)	ENSDLAG00005023468	REM1 (ENSDLAG00005023460)	DKEY-76P14.1 (ENSDLAG00005023451)	ENSDLAG00005034818	ENSDLAG00005023443	ENSDLAG00005030905	ENSDLAG00005026823	ENSDLAG00005023440	ENSDLAG00005023388	ENSDLAG00005033777	agtrap (ENSDLAG00005023371)	ENSDLAG00005028230	ENSDLAG00005023360	ENSDLAG00005022270 #22	ARHGEF10L (ENSDLAG00005021842)	igsf21a (ENSDLAG00005021779)	KLHDC7A (ENSDLAG00005028339)	ENSDLAG00005029953	aadacl4 (ENSDLAG00005021751)	DHRS3 (ENSDLAG00005030839)	LRRC38 (ENSDLAG00005032567)	ephb2b (ENSDLAG00005021187)	ENSDLAG00005027496	ENSDLAG00005032215	ENSDLAG00005021139	ENSDLAG00005021134	alpl (ENSDLAG00005019855)	ece1 (ENSDLAG00005016556)	EIF4G3 (ENSDLAG00005014710)
Large yellow croaker	MODERN SPECIES	478	tnni1b (ENSLCRG00005019546)	ENSLCRG00005019543	ENSLCRG00005019536	smpd2a (ENSLCRG00005019534)	tead3b (ENSLCRG00005019514)	ENSLCRG00005019512	ENSLCRG00005019509	ENSLCRG00005019508	ENSLCRG00005019506	PANK4 (ENSLCRG00005019451)	draxina (ENSLCRG00005019449)	agtrap (ENSLCRG00005019447)	ENSLCRG00005019445	RNF207 (ENSLCRG00005019435)	RPL22 (ENSLCRG00005019417)	ENSLCRG00005010614 #22	ARHGEF10L (ENSLCRG00005006871)	igsf21a (ENSLCRG00005006618)	KLHDC7A (ENSLCRG00005006603)	ENSLCRG00005006583	aadacl4 (ENSLCRG00005006570)	dhrs3b (ENSLCRG00005006559)	ENSLCRG00005006550	ephb2b (ENSLCRG00005005574)	ENSLCRG00005005096	elk4 (ENSLCRG00005005023)	ENSLCRG00005005013	slc45a3 (ENSLCRG00005005000)	nucks1a (ENSLCRG00005004986)	ENSLCRG00005004286	cldn19 (ENSLCRG00005004160)
Gilthead seabream	MODERN SPECIES	20	ENSSAUG00010004167	ENSSAUG00010004190	ENSSAUG00010004195	ENSSAUG00010004201	ENSSAUG00010004205	ENSSAUG00010004213	ENSSAUG00010004219	ENSSAUG00010004223	ENSSAUG00010004230	PANK4 (ENSSAUG00010004296)	draxina (ENSSAUG00010004441)	agtrap (ENSSAUG00010004444)	RNF207 (ENSSAUG00010004451)	ENSSAUG00010004472	RPL22 (ENSSAUG00010004477)	ENSSAUG00010004831 #22	ARHGEF10L (ENSSAUG00010019396)	igsf21a (ENSSAUG00010019532)	KLHDC7A (ENSSAUG00010019535)	ENSSAUG00010019537	aadacl4 (ENSSAUG00010019538)	dhrs3b (ENSSAUG00010019540)	ENSSAUG00010019542	ephb2b (ENSSAUG00010019558)	LACTBL1 (ENSSAUG00010020737)	ENSSAUG00010020738	ENSSAUG00010020739	ENSSAUG00010020740	alpl (ENSSAUG00010020743)	ece1 (ENSSAUG00010020842)	EIF4G3 (ENSSAUG00010023300)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000163346.a.b.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000159249.b.g.b	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000177901	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050
Lumpfish	MODERN SPECIES	20	ENSCLMG00005018737	ENSCLMG00005018735	ENSCLMG00005018734	ENSCLMG00005018732	ENSCLMG00005018731	ENSCLMG00005018728	ENSCLMG00005018726	ENSCLMG00005018723	ENSCLMG00005018722	PANK4 (ENSCLMG00005018709)	draxina (ENSCLMG00005018708)	agtrap (ENSCLMG00005018707)	ENSCLMG00005018706	RNF207 (ENSCLMG00005018705)	RPL22 (ENSCLMG00005018696)	ENSCLMG00005018693 #22	ARHGEF10L (ENSCLMG00005017806)	igsf21a (ENSCLMG00005017800)	KLHDC7A (ENSCLMG00005017798)	ENSCLMG00005017796	aadacl4 (ENSCLMG00005017794)	dhrs3b (ENSCLMG00005017791)	ENSCLMG00005017790	ephb2b (ENSCLMG00005017741)	LACTBL1 (ENSCLMG00005017736)	ENSCLMG00005017735	ENSCLMG00005017733	ENSCLMG00005017727	alpl (ENSCLMG00005017563)	ece1 (ENSCLMG00005011073)	EIF4G3 (ENSCLMG00005001840)
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000163346.a.b.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000021853	ENSCGOG00000021852	ENSCGOG00000021851	ENSCGOG00000021846	ENSCGOG00000021843	ENSCGOG00000021836	ENSCGOG00000021835	ENSCGOG00000021833	ENSCGOG00000021828	PANK4 (ENSCGOG00000021555)	draxina (ENSCGOG00000021543)	agtrap (ENSCGOG00000021539)	ENSCGOG00000021537	ENSCGOG00000021535	RPL22 (ENSCGOG00000021511)	ENSCGOG00000018269 #22	ARHGEF10L (ENSCGOG00000017503)	igsf21a (ENSCGOG00000017483)	ENSCGOG00000017482	ENSCGOG00000017481	aadacl4 (ENSCGOG00000017480)	dhrs3b (ENSCGOG00000017457)	ENSCGOG00000017454	ENSCGOG00000017452	ephb2b (ENSCGOG00000017424)	LACTBL1 (ENSCGOG00000017422)	ENSCGOG00000017421	ENSCGOG00000017420	ENSCGOG00000017419	alpl (ENSCGOG00000016553)	ece1 (ENSCGOG00000013555)
Pike perch	MODERN SPECIES	17		ENSSLUG00000022703	ENSSLUG00000022699	ENSSLUG00000022695	ENSSLUG00000022691	ENSSLUG00000022685	ENSSLUG00000022681	ENSSLUG00000022675	ENSSLUG00000022671	PANK4 (ENSSLUG00000022605)	draxina (ENSSLUG00000022563)	agtrap (ENSSLUG00000022556)	ENSSLUG00000022551	RNF207 (ENSSLUG00000022504)	RPL22 (ENSSLUG00000022484)	ENSSLUG00000021911 #22	ENSSLUG00000021778	ARHGEF10L (ENSSLUG00000021058)	ENSSLUG00000021022	ENSSLUG00000020987	igsf21a (ENSSLUG00000020972)	KLHDC7A (ENSSLUG00000020965)	ENSSLUG00000020961	aadacl4 (ENSSLUG00000020956)	dhrs3b (ENSSLUG00000020950)	ENSSLUG00000020946	ephb2b (ENSSLUG00000020437)	LACTBL1 (ENSSLUG00000020366)	ENSSLUG00000020355	ENSSLUG00000020342	ENSSLUG00000020338
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000159249.b.h	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000177901	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.b	ENSGT00940000163346.a.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000177901	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00940000154436.d	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT00940000163346.a.a	ENSGT00940000163346.a.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000177901	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00940000154436.d	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454
Mangrove rivulus	MODERN SPECIES	11					ENSKMAG00000018179	ENSKMAG00000018168	ENSKMAG00000018159	ENSKMAG00000018150	PANK4 (ENSKMAG00000018097)	draxina (ENSKMAG00000018056)	agtrap (ENSKMAG00000018034)	ENSKMAG00000018019	zpr1 (ENSKMAG00000018008)	RNF207 (ENSKMAG00000017931)	RPL22 (ENSKMAG00000017901)	ENSKMAG00000017827 #22	ARHGEF10L (ENSKMAG00000017777)	igsf21a (ENSKMAG00000017745)	KLHDC7A (ENSKMAG00000017691)	ENSKMAG00000017683	dhrs3b (ENSKMAG00000017664)	ENSKMAG00000017654	ephb2b (ENSKMAG00000017603)	LACTBL1 (ENSKMAG00000017557)	ENSKMAG00000017539	ENSKMAG00000017526	ENSKMAG00000017516	alpl (ENSKMAG00000017490)	alpl (ENSKMAG00000017464)	ece1 (ENSKMAG00000017413)	EIF4G3 (ENSKMAG00000017233)
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015004739	ENSNFUG00015004731	BX465851.1 (ENSNFUG00015004718)	YWHAB (ENSNFUG00015004709)	TOMM34 (ENSNFUG00015004698)	ENSNFUG00015023642	ENSNFUG00015023640	ENSNFUG00015023634	ENSNFUG00015023626	PANK4 (ENSNFUG00015023598)	DRAXIN (ENSNFUG00015023585)	agtrap (ENSNFUG00015023580)	ENSNFUG00015023577	RNF207 (ENSNFUG00015023565)	ENSNFUG00015023540	ENSNFUG00015023476 #22	ARHGEF10L (ENSNFUG00015022931)	ENSNFUG00015022842	ENSNFUG00015022840	igsf21a (ENSNFUG00015022829)	ENSNFUG00015022819	DHRS3 (ENSNFUG00015022813)	LRRC38 (ENSNFUG00015022811)	ephb2b (ENSNFUG00015021481)	LACTBL1B (ENSNFUG00015021394)	ENSNFUG00015021392	ENSNFUG00015021386	ENSNFUG00015021382	ENSNFUG00015021374	ALPL (ENSNFUG00015020541)	ece1 (ENSNFUG00015020041)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.a.y	ENSGT00940000163346.a.b	ENSGT00940000163346.a.a.z	ENSGT00940000175890	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00940000154436.d	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.a.y.b	ENSGT00940000163346.a.b.c	ENSGT00940000163346.a.b.d	ENSGT00940000163346.a.a.z	ENSGT00940000175890	ENSGT00940000163346.a.a.y.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00510000048936
Poecilia	ANCESTRAL SPECIES	25	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT01060000248901	ENSGT00940000163346.a.a.y.b	ENSGT00940000163346.a.b.c	ENSGT00940000163346.a.b.d	ENSGT00940000163346.a.a.z	ENSGT00940000175890	ENSGT00940000163346.a.a.y.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00510000048936
NAME_6	ANCESTRAL SPECIES	43	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000176208	ENSGT00940000163346.a.a.y.b	ENSGT00940000163346.a.b.c	ENSGT00940000163346.a.b.d	ENSGT00940000163346.a.a.z	ENSGT00940000175890	ENSGT00940000163346.a.a.y.a	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000159249.b.g.a	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o
Amazon molly	MODERN SPECIES	270	trib3 (ENSPFOG00000017285)	ENSPFOG00000017266	ENSPFOG00000022558	ENSPFOG00000022063	ENSPFOG00000017257	ENSPFOG00000022306	ENSPFOG00000017255	si:ch73-21g5.7 (ENSPFOG00000020897)	ENSPFOG00000017251	PANK4 (ENSPFOG00000017176)	draxina (ENSPFOG00000017160)	agtrap (ENSPFOG00000017138)	zpr1 (ENSPFOG00000020896)	RNF207 (ENSPFOG00000017102)	ENSPFOG00000017075	ENSPFOG00000016981 #22	ARHGEF10L (ENSPFOG00000016838)	igsf21a (ENSPFOG00000016806)	KLHDC7A (ENSPFOG00000016798)	dhrs3b (ENSPFOG00000016763)	ENSPFOG00000016759	ephb2b (ENSPFOG00000016690)	LACTBL1 (ENSPFOG00000016668)	ENSPFOG00000016664	ENSPFOG00000016658	alpl (ENSPFOG00000016615)	ece1 (ENSPFOG00000016512)	EIF4G3 (ENSPFOG00000016418)	hp1bp3 (ENSPFOG00000022334)	sh2d5 (ENSPFOG00000016381)	kif17 (ENSPFOG00000016357)
Guppy	MODERN SPECIES	457	pnp4a (ENSPREG00000014598)	trib3 (ENSPREG00000014584)	ENSPREG00000014567	ENSPREG00000014554	ENSPREG00000014545	ENSPREG00000014539	ENSPREG00000014533	ENSPREG00000014529	si:ch73-21g5.7 (ENSPREG00000014525)	ENSPREG00000014517	PANK4 (ENSPREG00000014475)	draxina (ENSPREG00000014449)	agtrap (ENSPREG00000014433)	RNF207 (ENSPREG00000014357)	zpr1 (ENSPREG00000014324)	ENSPREG00000014285 #22	ARHGEF10L (ENSPREG00000014201)	igsf21a (ENSPREG00000014164)	KLHDC7A (ENSPREG00000014151)	dhrs3b (ENSPREG00000014128)	ENSPREG00000014108	ephb2b (ENSPREG00000014075)	LACTBL1 (ENSPREG00000014060)	ENSPREG00000014050	ENSPREG00000014027	ENSPREG00000013987	alpl (ENSPREG00000013957)	ece1 (ENSPREG00000013927)	EIF4G3 (ENSPREG00000013883)	hp1bp3 (ENSPREG00000013843)	sh2d5 (ENSPREG00000013827)
Platyfish	MODERN SPECIES	12	trib3 (ENSXMAG00000006175)	ENSXMAG00000006177	ENSXMAG00000026691	ENSXMAG00000006187	ENSXMAG00000006189	ENSXMAG00000023969	ENSXMAG00000026037	si:ch73-21g5.7 (ENSXMAG00000019843)	ENSXMAG00000006198	PANK4 (ENSXMAG00000006201)	draxina (ENSXMAG00000006235)	agtrap (ENSXMAG00000029470)	zpr1 (ENSXMAG00000019854)	RNF207 (ENSXMAG00000014726)	ENSXMAG00000014707	ENSXMAG00000014686 #22	ARHGEF10L (ENSXMAG00000002919)	igsf21a (ENSXMAG00000017576)	KLHDC7A (ENSXMAG00000023754)	dhrs3b (ENSXMAG00000021912)	ENSXMAG00000022255	ephb2b (ENSXMAG00000017602)	LACTBL1 (ENSXMAG00000017663)	ENSXMAG00000017664	ENSXMAG00000017666	ENSXMAG00000027285	alpl (ENSXMAG00000017668)	ece1 (ENSXMAG00000017683)	EIF4G3 (ENSXMAG00000017701)	hp1bp3 (ENSXMAG00000017715)	sh2d5 (ENSXMAG00000017721)
NAME_4	ANCESTRAL SPECIES	37	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00940000176208	ENSGT00940000163346.a.a.y	ENSGT00940000163346.a.b	ENSGT00940000163346.a.a.z	ENSGT00940000175890	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT00940000154436.d	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00940000155314.p
Sheepshead minnow	MODERN SPECIES	229											ENSCVAG00000016198	zpr1 (ENSCVAG00000016206)	zpr1 (ENSCVAG00000016212)	RNF207 (ENSCVAG00000016313)	ENSCVAG00000016334	ENSCVAG00000016412 #22	ARHGEF10L (ENSCVAG00000016541)	igsf21a (ENSCVAG00000016582)	KLHDC7A (ENSCVAG00000016595)	dhrs3b (ENSCVAG00000016619)	ENSCVAG00000016625	ephb2b (ENSCVAG00000016683)	LACTBL1 (ENSCVAG00000016722)	ENSCVAG00000016752	ENSCVAG00000000426	ENSCVAG00000016761	alpl (ENSCVAG00000016782)	ece1 (ENSCVAG00000016834)	EIF4G3 (ENSCVAG00000016918)	hp1bp3 (ENSCVAG00000016945)	sh2d5 (ENSCVAG00000016966)
Mummichog	MODERN SPECIES	2464	REM1 (ENSFHEG00000003032)	pnp4a (ENSFHEG00000003035)	trib3 (ENSFHEG00000003040)	ENSFHEG00000003058	ENSFHEG00000000904	ENSFHEG00000003077	ENSFHEG00000003085	ENSFHEG00000003091	si:ch73-21g5.7 (ENSFHEG00000003098)	PANK4 (ENSFHEG00000003135)	draxina (ENSFHEG00000003156)	agtrap (ENSFHEG00000003163)	zpr1 (ENSFHEG00000003169)	RNF207 (ENSFHEG00000003194)	RPL22 (ENSFHEG00000003210)	ENSFHEG00000003253 #22	ARHGEF10L (ENSFHEG00000003340)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000156286	ENSGT00390000003224.A	ENSGT00940000161227	ENSGT00940000162143	ENSGT00940000168313	ENSGT00940000164287	ENSGT00390000006658.a.a	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00950000183156.a.b.b.b.b.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT01100000264530	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00510000048936
Oryzias_b	ANCESTRAL SPECIES	64	ENSGT00940000156286	ENSGT00390000003224.A	ENSGT00940000161227	ENSGT00940000162143	ENSGT00940000168313	ENSGT00940000164287	ENSGT00390000006658.a.a	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00950000183156.a.b.b.b.b.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT01100000264530	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00510000048936
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000003317	ENSOJAG00000003325	ENSOJAG00000003332	ENSOJAG00000003368	ccdc51 (ENSOJAG00000003373)	osgn1 (ENSOJAG00000003399)	ENSOJAG00000003407	mtss1 (ENSOJAG00000003414)	ENSOJAG00000003423	PANK4 (ENSOJAG00000003433)	draxina (ENSOJAG00000003466)	agtrap (ENSOJAG00000003480)	RNF207 (ENSOJAG00000003536)	zpr1 (ENSOJAG00000003909)	ENSOJAG00000003930	ENSOJAG00000004096 #22	ARHGEF10L (ENSOJAG00000005380)	ENSOJAG00000007795	igsf21a (ENSOJAG00000007803)	ENSOJAG00000007814	dhrs3b (ENSOJAG00000007838)	ENSOJAG00000007856	ephb2b (ENSOJAG00000007955)	LACTBL1 (ENSOJAG00000008871)	ENSOJAG00000008885	ENSOJAG00000008905	ENSOJAG00000008943	ENSOJAG00000008953	alpl (ENSOJAG00000009091)	ece1 (ENSOJAG00000010707)	EIF4G3 (ENSOJAG00000013950)
Indian medaka	MODERN SPECIES	8	ENSOMEG00000014499	ENSOMEG00000014518	ENSOMEG00000014537	ccdc51 (ENSOMEG00000014554)	osgn1 (ENSOMEG00000014580)	ENSOMEG00000014595	mtss1 (ENSOMEG00000014663)	PANK4 (ENSOMEG00000014713)	ENSOMEG00000014743	ENSOMEG00000014758	agtrap (ENSOMEG00000014765)	zpr1 (ENSOMEG00000014780)	zpr1 (ENSOMEG00000014793)	RNF207 (ENSOMEG00000014840)	ENSOMEG00000014872	ENSOMEG00000014929 #22	ENSOMEG00000014961	ENSOMEG00000014981	ENSOMEG00000000375	ENSOMEG00000015000	ENSOMEG00000015007	rassf7b (ENSOMEG00000015045)	ENSOMEG00000015059	guca1g (ENSOMEG00000015078)	ENSOMEG00000015108	nsfa (ENSOMEG00000015131)	ENSOMEG00000015144	ENSOMEG00000015161	rpl23 (ENSOMEG00000000388)	hao1 (ENSOMEG00000015190)	ENSOMEG00000015210
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000156286	ENSGT00390000003224.A	ENSGT00940000161227	ENSGT00940000162143	ENSGT00940000168313	ENSGT00940000164287	ENSGT00390000006658.a.a	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00950000183156.a.b.b.b.b.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT01100000264530	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000156454	ENSGT00940000155314.o	ENSGT00510000048936
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000024253	ENSORLG00000017261	ENSORLG00000017257	ENSORLG00000019405	ENSORLG00000026902	ccdc51 (ENSORLG00000019089)	osgn1 (ENSORLG00000017249)	ENSORLG00000017236	ENSORLG00000029289	PANK4 (ENSORLG00000004961)	ENSORLG00000029769	agtrap (ENSORLG00000024798)	zpr1 (ENSORLG00000017211)	RNF207 (ENSORLG00000017207)	RPL22 (ENSORLG00000028557)	ENSORLG00000017190 #22	ENSORLG00000024401	ARHGEF10L (ENSORLG00000017150)	ENSORLG00000025613	igsf21a (ENSORLG00000017131)	KLHDC7A (ENSORLG00000017128)	dhrs3b (ENSORLG00000017121)	ENSORLG00000017102	ephb2b (ENSORLG00000017097)	LACTBL1 (ENSORLG00000017083)	ENSORLG00000017078	ENSORLG00000029961	ENSORLG00000017075	alpl (ENSORLG00000017066)	ece1 (ENSORLG00000017044)	EIF4G3 (ENSORLG00000017007)
Chinese medaka	MODERN SPECIES	12	ENSOSIG00000018128	ENSOSIG00000018127	ENSOSIG00000018113	ENSOSIG00000018109	ENSOSIG00000018106	ccdc51 (ENSOSIG00000018094)	osgn1 (ENSOSIG00000018087)	ENSOSIG00000018080	mtss1 (ENSOSIG00000018076)	PANK4 (ENSOSIG00000017912)	draxina (ENSOSIG00000017909)	agtrap (ENSOSIG00000017908)	ENSOSIG00000017906	RNF207 (ENSOSIG00000017904)	ENSOSIG00000017884	ENSOSIG00000017539 #22	ARHGEF10L (ENSOSIG00000015642)	igsf21a (ENSOSIG00000015625)	KLHDC7A (ENSOSIG00000015623)	dhrs3b (ENSOSIG00000015622)	ENSOSIG00000015620	ephb2b (ENSOSIG00000015447)	LACTBL1 (ENSOSIG00000015433)	ENSOSIG00000015430	ENSOSIG00000015428	ENSOSIG00000015426	alpl (ENSOSIG00000013006)	ece1 (ENSOSIG00000012548)	EIF4G3 (ENSOSIG00000012270)	hp1bp3 (ENSOSIG00000012256)	SH2D5 (ENSOSIG00000012253)
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000155088.a #22
Lyretail cichlid	MODERN SPECIES	294	REM1 (ENSNBRG00000012202)	pnp4a (ENSNBRG00000011970)	trib3 (ENSNBRG00000011924)	ENSNBRG00000011911	ENSNBRG00000011862	ENSNBRG00000011843	ENSNBRG00000011834	ENSNBRG00000011821	ENSNBRG00000011814	PANK4 (ENSNBRG00000011751)	draxina (ENSNBRG00000011715)	agtrap (ENSNBRG00000011665)	RNF207 (ENSNBRG00000011578)	zpr1 (ENSNBRG00000011519)	RPL22 (ENSNBRG00000011493)	ENSNBRG00000011387 #22	ARHGEF10L (ENSNBRG00000011289)	igsf21a (ENSNBRG00000011251)	KLHDC7A (ENSNBRG00000011226)	ENSNBRG00000011211	aadacl4 (ENSNBRG00000011184)	dhrs3b (ENSNBRG00000011159)	ENSNBRG00000011141	ephb2b (ENSNBRG00000010956)	ephb2b (ENSNBRG00000010699)	LACTBL1 (ENSNBRG00000010646)	ENSNBRG00000010617	ENSNBRG00000010600	ENSNBRG00000010572	alpl (ENSNBRG00000010524)	ece1 (ENSNBRG00000010451)
Pomacentridae	ANCESTRAL SPECIES	56							ENSGT00940000163346.a.b	ENSGT01060000248901	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000159249.b.h	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000178714
Pomacentridae_A	ANCESTRAL SPECIES	72								ENSGT00940000163346.a.b	ENSGT01060000248901	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00950000183063.d	ENSGT00940000156050	ENSGT00940000178714
Amphiprion	ANCESTRAL SPECIES	150				ENSGT00940000163346.a.b.h.a.b.a	ENSGT01060000248901	ENSGT00940000163346.a.b.h.a.a.a	ENSGT00940000163346.a.b.g.a.a	ENSGT00940000163346.a.b.g.a.b	ENSGT00940000158896	ENSGT00390000013828	ENSGT00390000017402	ENSGT00390000005306	ENSGT00510000048612	ENSGT00940000153314.b.a.b	ENSGT00940000159249.b.h	ENSGT00940000155088.a #22	ENSGT00940000153798.A.b.g	ENSGT00390000002421.b	ENSGT00940000162724	ENSGT00390000014553	ENSGT00940000163565	ENSGT00940000158724.a	ENSGT00940000163979	ENSGT00940000155503.a	ENSGT00450000040404.a	ENSGT01100000263484.A.c.a.b	ENSGT00980000198685	ENSGT01010000222588	ENSGT00940000177256.A	ENSGT00940000177256.B	ENSGT00940000177237.C.b
Orange clownfish	MODERN SPECIES	20	ENSAPEG00000020846	ENSAPEG00000020834	ENSAPEG00000020797	ENSAPEG00000020785	ENSAPEG00000020776	ENSAPEG00000020763	ENSAPEG00000020758	ENSAPEG00000020748	ENSAPEG00000020728	PANK4 (ENSAPEG00000020675)	draxina (ENSAPEG00000020618)	agtrap (ENSAPEG00000020536)	zpr1 (ENSAPEG00000020534)	RNF207 (ENSAPEG00000020458)	RPL22 (ENSAPEG00000020428)	ENSAPEG00000020306 #22	ARHGEF10L (ENSAPEG00000020222)	igsf21a (ENSAPEG00000020166)	KLHDC7A (ENSAPEG00000020134)	ENSAPEG00000020119	aadacl4 (ENSAPEG00000020108)	dhrs3b (ENSAPEG00000020086)	ENSAPEG00000020076	ephb2b (ENSAPEG00000020015)	LACTBL1 (ENSAPEG00000019981)	ENSAPEG00000019957	ENSAPEG00000019915	ENSAPEG00000019897	ENSAPEG00000019842	ENSAPEG00000019807	ENSAPEG00000019778
Spiny chromis	MODERN SPECIES	136									PANK4 (ENSAPOG00000020170)	draxina (ENSAPOG00000020207)	agtrap (ENSAPOG00000020212)	zpr1 (ENSAPOG00000020224)	RNF207 (ENSAPOG00000020294)	zpr1 (ENSAPOG00000020313)	RPL22 (ENSAPOG00000020339)	ENSAPOG00000020502 #22	ARHGEF10L (ENSAPOG00000020640)	igsf21a (ENSAPOG00000020700)	KLHDC7A (ENSAPOG00000020714)	ENSAPOG00000020755	aadacl4 (ENSAPOG00000020763)	dhrs3b (ENSAPOG00000020790)	ENSAPOG00000020811
Tiger tail seahorse	MODERN SPECIES	280	mych (ENSHCOG00000014562)	ergic3 (ENSHCOG00000014539)	romo1 (ENSHCOG00000014487)	b9d2 (ENSHCOG00000014477)	pnp4a (ENSHCOG00000014467)	trib3 (ENSHCOG00000014449)	ENSHCOG00000014443	ENSHCOG00000014432	ENSHCOG00000000402	PANK4 (ENSHCOG00000014406)	draxina (ENSHCOG00000014369)	agtrap (ENSHCOG00000014358)	RNF207 (ENSHCOG00000014352)	zpr1 (ENSHCOG00000014326)	RPL22 (ENSHCOG00000014322)	ENSHCOG00000014308 #22	ENSHCOG00000014254	ARHGEF10L (ENSHCOG00000014235)	igsf21a (ENSHCOG00000014201)	KLHDC7A (ENSHCOG00000014165)	dhrs3b (ENSHCOG00000014150)	ENSHCOG00000014131	rbck1 (ENSHCOG00000014029)	tbc1d20 (ENSHCOG00000013935)	ZNFX1 (ENSHCOG00000013908)	CDH22 (ENSHCOG00000013890)	tfap2c (ENSHCOG00000013799)	rtf2 (ENSHCOG00000013783)	GCNT7 (ENSHCOG00000013768)	wnt4 (ENSHCOG00000013720)	svbp (ENSHCOG00000013699)
Cod	MODERN SPECIES	4	ENSGMOG00000017740	ENSGMOG00000036449	ENSGMOG00000024379	ENSGMOG00000026563	ENSGMOG00000024040	ENSGMOG00000035127	ENSGMOG00000003262	ENSGMOG00000025169	ENSGMOG00000035216	ENSGMOG00000003315	ENSGMOG00000037135	ENSGMOG00000030770	agtrap (ENSGMOG00000028420)	ENSGMOG00000028571	ENSGMOG00000032591	ENSGMOG00000003394 #22	ENSGMOG00000030131	ENSGMOG00000009798	igsf21a (ENSGMOG00000036725)	ENSGMOG00000018679	ENSGMOG00000032408	ENSGMOG00000002226	ENSGMOG00000035259	ENSGMOG00000031620	ENSGMOG00000026228	ENSGMOG00000029721	ENSGMOG00000028592	ENSGMOG00000036770	ENSGMOG00000011692	ENSGMOG00000011688	eif6 (ENSGMOG00000011684)
Actinopterygii	ANCESTRAL SPECIES	1176																ENSGT00940000155088.b #22	ENSGT00940000160313
Reedfish	MODERN SPECIES	17	RIMKLB (ENSECRG00000008945)	ENSECRG00000008964	ENSECRG00000008977	aicda (ENSECRG00000008984)	ENSECRG00000008997	ENSECRG00000009010	ENSECRG00000009030	ENSECRG00000009046	ENSECRG00000009060	ENSECRG00000009084	ENSECRG00000009106	ENSECRG00000009142	mlf2 (ENSECRG00000009208) #15	cdc42l (ENSECRG00000009233)	ENSECRG00000009258	chd4a (ENSECRG00000009284) #22	slc2a3a (ENSECRG00000009318)	ENSECRG00000009345	ENSECRG00000009369	ENSECRG00000009388	ENSECRG00000009394	ENSECRG00000009403	ENSECRG00000009411	ENSECRG00000009425	ENSECRG00000009436	ENSECRG00000009452	ENSECRG00000009462	ENSECRG00000009473	ENSECRG00000009485	ENSECRG00000009495	ENSECRG00000009506
Neopterygii	ANCESTRAL SPECIES	322								ENSGT01030000234575.c.a.a.a.a.a.a.b.a	ENSGT00940000170568	ENSGT00510000054197	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b #22	ENSGT00940000160313
Spotted gar	MODERN SPECIES	665	cldc1 (ENSLOCG00000007155)	ENSLOCG00000007181	ENSLOCG00000007201	ENSLOCG00000007220	ENSLOCG00000007241	ENSLOCG00000007260	ENSLOCG00000007285	ENSLOCG00000007303	ENSLOCG00000007317	ENSLOCG00000007331	ENSLOCG00000007356	eno2 (ENSLOCG00000007366)	mlf2 (ENSLOCG00000007392) #15	cdc42l (ENSLOCG00000007407)	wnt4b (ENSLOCG00000007422)	chd4a (ENSLOCG00000007438) #22	ENSLOCG00000007477	ENSLOCG00000007490	ENSLOCG00000007510	ENSLOCG00000007523	c1r (ENSLOCG00000007540)	ENSLOCG00000007576	c1s.2 (ENSLOCG00000007589)	c1s.2 (ENSLOCG00000007599)	ENSLOCG00000007609	ENSLOCG00000007631	rbp5 (ENSLOCG00000007648)	ptpn6 (ENSLOCG00000007660)	ENSLOCG00000007675	lpcat3 (ENSLOCG00000007684)	CLSTN3 (ENSLOCG00000007696)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	382																ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000160313	ENSGT00940000160411.j
Clupeocephala	ANCESTRAL SPECIES	52	ENSGT00940000161735	ENSGT00940000156904.a.a #18	ENSGT00560000077232.A.b	ENSGT00940000154370.c.a	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00520000055635.c.b.a	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000160313	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00390000013183.d.b.b	ENSGT00940000162720.b.b.b	ENSGT00940000159441.j
Otomorpha	ANCESTRAL SPECIES	208	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.a	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b	ENSGT00940000155088.b.a.a #22
Clupeiformes	ANCESTRAL SPECIES	15	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c.d	ENSGT00520000055635.c.b.a	ENSGT00940000166708	ENSGT00940000158852.g.a	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b	ENSGT00940000155088.b.a.a #22
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000025176	ENSCHAG00000026180	ENSCHAG00000026185	POU2F2 (ENSCHAG00000026187)	erf (ENSCHAG00000026189)	CIC (ENSCHAG00000026192)	gsk3aa (ENSCHAG00000026206)	ENSCHAG00000026247	GRIK5 (ENSCHAG00000026252)	ENSCHAG00000026339	zgc:174904 (ENSCHAG00000026344)	gnb3b (ENSCHAG00000026346) #9	tpi1a (ENSCHAG00000026350)	eno2 (ENSCHAG00000026360)	cdc42l (ENSCHAG00000002415)	chd4a (ENSCHAG00000002793) #22	naxe (ENSCHAG00000007145)	sf3b4 (ENSCHAG00000007167)	mrpl24 (ENSCHAG00000007178)	prcc (ENSCHAG00000007189)	ENSCHAG00000007208	znf516 (ENSCHAG00000007326)	tshz1 (ENSCHAG00000007345)	cndp2 (ENSCHAG00000007351)	ENSCHAG00000007479	ENSCHAG00000007497	ENSCHAG00000007546	ENSCHAG00000007577	sema6d (ENSCHAG00000007598)	ENSCHAG00000007758	tnfaip8l2a (ENSCHAG00000007782)
Denticle herring	MODERN SPECIES	12	ENSDCDG00000014975	ENSDCDG00000014980	pvrl2l (ENSDCDG00000014985)	atp1a3a (ENSDCDG00000015285)	POU2F2 (ENSDCDG00000023322)	erf (ENSDCDG00000023325)	ENSDCDG00000023335	GSK3A (ENSDCDG00000023362)	GRIK5 (ENSDCDG00000023449)	ENSDCDG00000023883	zgc:174904 (ENSDCDG00000023884)	gnb3b (ENSDCDG00000023885) #9	tpi1a (ENSDCDG00000023887)	eno2 (ENSDCDG00000023903)	ENSDCDG00000024043	chd4a (ENSDCDG00000024056) #22	ENSDCDG00000024626	ndufv1 (ENSDCDG00000024630)	ENSDCDG00000025129	ENSDCDG00000025134	ENSDCDG00000025149	necap1 (ENSDCDG00000025150)	epn1b (ENSDCDG00000025153)	si:ch211-232m10.6 (ENSDCDG00000025156)	rcvrn3 (ENSDCDG00000025159)	tmem238a (ENSDCDG00000025162)	ccdc106b (ENSDCDG00000025163)	u2af2b (ENSDCDG00000025167)	cnot3b (ENSDCDG00000025444)	ENSDCDG00000025649	znf865 (ENSDCDG00000025654)
Otophysi	ANCESTRAL SPECIES	207	ENSGT00560000077232.A.a.f	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.a	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000155088.b.a.a #22
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00940000155557.jc.a	ENSGT00940000156395.f	ENSGT00390000015789	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.e	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.f	ENSGT01090000260030.a.b.b.b.v	ENSGT01030000235009	ENSGT00940000164067.A	ENSGT01030000234627.a.a.d.b	ENSGT00940000175288	ENSGT00940000164729.a.a	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000165323	ENSGT00940000159051	ENSGT00730000111283.a	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00940000154725.j.a.a.a.a.a.a	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.b	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000159308	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	345	ENSGT00940000156395.f.a	ENSGT00390000015789.k.b.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x.e	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.e.c	ENSGT01090000260030.a.b.b.b.v.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.f.a	ENSGT01090000260030.a.b.b.b.v.a.b	ENSGT01030000235009.c	ENSGT00940000164067.A.h	ENSGT01030000234627.a.a.d.b.b	ENSGT00940000175288	ENSGT00940000164729.a.a.h	ENSGT01000000214413.b.a.b.a.b.f #9	ENSGT00390000013354.b.b.a	ENSGT00950000182805.a.a.b.a.c.b.b	ENSGT00940000155088.b.a.a.a #22	ENSGT00940000165323.a	ENSGT00940000159051.a.a	ENSGT00730000111283.a.c.a	ENSGT00940000157595.g	ENSGT00940000153845.a.a.d	ENSGT00940000154725.j.a.a.a.a.a.a.a.a.b
Cyprininae_a	ANCESTRAL SPECIES	43	ENSGT00940000156395.f.a	ENSGT00390000015789.k.b.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x.f.b	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x.e	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.e.c	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.f.a	ENSGT01090000260030.a.b.b.b.v.a.b	ENSGT01030000235009.c	ENSGT00940000164067.A.h	ENSGT01030000234627.a.a.d.b.b	ENSGT00940000175288	ENSGT00940000164729.a.a.h	ENSGT01000000214413.b.a.b.a.b.f #9	ENSGT00390000013354.b.b.a	ENSGT00950000182805.a.a.b.a.c.b.b	ENSGT00940000155088.b.a.a.a #22	ENSGT00940000165323.a	ENSGT00940000159051.a.a	ENSGT00730000111283.a.c.a	ENSGT00940000157595.g	ENSGT00940000153845.a.a.d	ENSGT00940000154725.j.a.a.a.a.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.b	ENSGT00940000154725.j.b.b	ENSGT00940000157280.l.b.a	ENSGT00940000156079.d	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791.w	ENSGT00390000006486.i.b
Common carp reference	MODERN SPECIES	12	eif1 (ENSCCRG00000008399)	ENSCCRG00000075103	ENSCCRG00000055063	ENSCCRG00000052842	krtt1c19e (ENSCCRG00000080025)	ENSCCRG00000005792	si:dkeyp-113d7.1 (ENSCCRG00000005788)	ENSCCRG00000081563	prf1.3 (ENSCCRG00000068060)	ENSCCRG00000057066	stx1b (ENSCCRG00000067368)	ENSCCRG00000077043	gnb3b (ENSCCRG00000038470) #9	tpi1a (ENSCCRG00000076664)	eno2 (ENSCCRG00000038487)	chd4a (ENSCCRG00000069908) #22	zgc:91968 (ENSCCRG00000036698)	stard3 (ENSCCRG00000036733)	ppp1r1b (ENSCCRG00000054172)	CDK12 (ENSCCRG00000073747)	ENSCCRG00000022010	ST3GAL1 (ENSCCRG00000059057)	ST3GAL1 (ENSCCRG00000054614)	ST3GAL1 (ENSCCRG00000050265)	ENSCCRG00000054809	ENSCCRG00000050236	ST3GAL1 (ENSCCRG00000035652)	KHDRBS3 (ENSCCRG00000071461)	FAM135B (ENSCCRG00000067822)	ENSCCRG00000066020	ENSCCRG00000064829
Golden-line barbel	MODERN SPECIES	381	si:ch211-264f5.2 (ENSSGRG00000052093)	wipf2b (ENSSGRG00000052095)	JUP (ENSSGRG00000052097)	eif1 (ENSSGRG00000052136)	ENSSGRG00000052138	ENSSGRG00000052139	ENSSGRG00000052141	krtt1c19e (ENSSGRG00000052144)	si:dkeyp-113d7.1 (ENSSGRG00000052146)	stx1b (ENSSGRG00000052149)	ENSSGRG00000052153	ENSSGRG00000052154	gnb3b (ENSSGRG00000052155) #9	tpi1a (ENSSGRG00000052156)	eno2 (ENSSGRG00000052170)	chd4a (ENSSGRG00000052226) #22	zgc:91968 (ENSSGRG00000053808)	stard3 (ENSSGRG00000053810)	ENSSGRG00000053878	FBXL20 (ENSSGRG00000053889)	ENSSGRG00000053891	ENSSGRG00000053894	ENSSGRG00000053897
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	10	ENSCARG00000005699	ENSCARG00000005693	ENSCARG00000005586	ENSCARG00000005558	psmb8a (ENSCARG00000005552)	tap2a (ENSCARG00000004198)	ENSCARG00000004068	si:dkeyp-113d7.1 (ENSCARG00000004055)	ENSCARG00000004031	stx1b (ENSCARG00000003918)	ENSCARG00000003890	ENSCARG00000003879	gnb3b (ENSCARG00000003864) #9	tpi1a (ENSCARG00000003851)	eno2 (ENSCARG00000003578)	chd4a (ENSCARG00000003295) #22	zgc:91968 (ENSCARG00000003248)	stard3 (ENSCARG00000002942)	ppp1r1b (ENSCARG00000002899)	CDK12 (ENSCARG00000002884)	ENSCARG00000002882	FBXL20 (ENSCARG00000002735)	ENSCARG00000002709	ENSCARG00000002705	ENSCARG00000002700	ENSCARG00000002691	SNX13 (ENSCARG00000002417)	DENND3 (ENSCARG00000002237)	klhl7 (ENSCARG00000002184)	OXSM (ENSCARG00000002156)	ENSCARG00000002141
Goldfish	MODERN SPECIES	626																chd4a (ENSCARG00000067607) #22	zgc:91968 (ENSCARG00000067613)	stard3 (ENSCARG00000067624)
Cyprininae	ANCESTRAL SPECIES	55	ENSGT01030000234646.B.a.a.a.a.b.a	ENSGT00940000155557.jc.a.b	ENSGT00940000156395.f.b	ENSGT00390000015789.k.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x.f.a.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.e.d	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.f.b	ENSGT01090000260030.a.b.b.b.v.a.a	ENSGT01030000235009.d	ENSGT00940000164067.A.g	ENSGT01030000234627.a.a.d.b.a	ENSGT00940000164729.a.a.g	ENSGT01000000214413.b.a.b.a.b.e #9	ENSGT00390000013354.b.b.b	ENSGT00950000182805.a.a.b.a.c.b.a	ENSGT00940000155088.b.a.a.b #22	ENSGT00940000165323.b	ENSGT00940000159051.a.b	ENSGT00730000111283.a.c.b	ENSGT00940000157595.h	ENSGT00940000153845.a.a.c	ENSGT00940000154725.j.a.a.a.a.a.a.b	ENSGT00940000157280.l.b.b	ENSGT00940000156079.c	ENSGT00940000162238.a.a	ENSGT00940000159308	ENSGT00940000159791.x	ENSGT00390000006486.i.a	ENSGT00950000183031.A.a.a.sd.b	ENSGT00950000183028.a.b.b.h	ENSGT00390000015257.b.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	38	pdk2b (ENSCARG00000042601)	wipf2b (ENSCARG00000042519)	JUP (ENSCARG00000042204)	EIF1 (ENSCARG00000042120)	ENSCARG00000042005	krtt1c19e (ENSCARG00000041982)	ENSCARG00000041962	si:dkeyp-113d7.1 (ENSCARG00000041955)	ENSCARG00000041939	prf1.3 (ENSCARG00000041917)	stx1b (ENSCARG00000041483)	ENSCARG00000041429	gnb3b (ENSCARG00000041313) #9	tpi1a (ENSCARG00000041236)	eno2 (ENSCARG00000041139)	chd4a (ENSCARG00000038601) #22	zgc:91968 (ENSCARG00000038440)	stard3 (ENSCARG00000036783)	ppp1r1b (ENSCARG00000036691)	CDK12 (ENSCARG00000036583)	FBXL20 (ENSCARG00000036301)	ENSCARG00000036283	ENSCARG00000036274	ENSCARG00000036271	SLC45A4 (ENSCARG00000036260)	GPR20 (ENSCARG00000036258)	ENSCARG00000036193	ENSCARG00000036127	OXSM (ENSCARG00000036086)	dgat1a (ENSCARG00000035951)	zgc:63863 (ENSCARG00000035938)
Goldfish	MODERN SPECIES	38	ENSCARG00000040829	ST3GAL1 (ENSCARG00000040814)	ENSCARG00000040805	eno2 (ENSCARG00000040759)	tpi1a (ENSCARG00000040724)	gnb3b (ENSCARG00000040701) #9	ENSCARG00000040677	stx1b (ENSCARG00000040639)	prf1.3 (ENSCARG00000040625)	ENSCARG00000040590	si:dkeyp-113d7.1 (ENSCARG00000040581)	ENSCARG00000040556	krtt1c19e (ENSCARG00000040524)	ENSCARG00000040379	eif1 (ENSCARG00000040295)	chd4a (ENSCARG00000030876) #22	zgc:91968 (ENSCARG00000030551)	stard3 (ENSCARG00000029933)	ppp1r1b (ENSCARG00000029877)	CDK12 (ENSCARG00000029853)	ENSCARG00000029836	JUP (ENSCARG00000029775)	wipf2b (ENSCARG00000029755)	pdk2b (ENSCARG00000029746)	zgc:174904 (ENSCARG00000029741)	ENSCARG00000029734	GRIK5 (ENSCARG00000028160)	gsk3aa (ENSCARG00000028048)	ENSCARG00000028022	nedd9 (ENSCARG00000027982)	smim13 (ENSCARG00000027974)
Cyprininae_a	ANCESTRAL SPECIES	80	ENSGT00940000155557.jc.a.b	ENSGT00940000156395.f.b	ENSGT00390000015789.k.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.b.x.f.a.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.e.d	ENSGT01090000260030.a.b.b.b.v.a.a	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.a.f.b	ENSGT01090000260030.a.b.b.b.v.b	ENSGT01030000235009.d	ENSGT00940000164067.A.g	ENSGT01030000234627.a.a.d.b.a	ENSGT00940000164729.a.a.g	ENSGT01000000214413.b.a.b.a.b.e #9	ENSGT00390000013354.b.b.b	ENSGT00950000182805.a.a.b.a.c.b.a	ENSGT00940000155088.b.a.a.b #22	ENSGT00940000165323.b	ENSGT00940000159051.a.b	ENSGT00730000111283.a.c.b	ENSGT00940000157595.h	ENSGT00940000153845.a.a.c	ENSGT00940000154725.j.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.a	ENSGT00940000154725.j.b.a.a	ENSGT00940000154725.j.a.a.a.a.a.a.b	ENSGT00940000157280.l.b.b	ENSGT00940000156079.c	ENSGT00940000159791.x	ENSGT00390000006486.i.a	ENSGT00950000183031.A.a.a.sd.b	ENSGT00950000183028.a.b.b.h
Common carp reference	MODERN SPECIES	31	zgc:174904 (ENSCCRG00000008690)	pdk2b (ENSCCRG00000045593)	wipf2b (ENSCCRG00000070194)	ENSCCRG00000010503	eif1 (ENSCCRG00000058842)	ENSCCRG00000053080	krtt1c19e (ENSCCRG00000067751)	si:dkeyp-113d7.1 (ENSCCRG00000080920)	ENSCCRG00000057967	prf1.3 (ENSCCRG00000005779)	stx1b (ENSCCRG00000004717)	ENSCCRG00000077692	gnb3b (ENSCCRG00000005771) #9	tpi1a (ENSCCRG00000071287)	eno2 (ENSCCRG00000005707)	chd4a (ENSCCRG00000038557) #22	zgc:91968 (ENSCCRG00000066561)	stard3 (ENSCCRG00000046973)	ppp1r1b (ENSCCRG00000038461)	CDK12 (ENSCCRG00000021984)	ENSCCRG00000055694	ST3GAL1 (ENSCCRG00000077098)	ST3GAL1 (ENSCCRG00000060275)	ENSCCRG00000014824	ENSCCRG00000068801	KHDRBS3 (ENSCCRG00000039121)	FAM135B (ENSCCRG00000032935)	ENSCCRG00000075899	ENSCCRG00000070761	kcnk9 (ENSCCRG00000006675)	TRAPPC9 (ENSCCRG00000039699)
Golden-line barbel	MODERN SPECIES	852			ENSSGRG00000022488	ENSSGRG00000022457	ENSSGRG00000022455	krtt1c19e (ENSSGRG00000022453)	ENSSGRG00000022419	si:dkeyp-113d7.1 (ENSSGRG00000022418)	ENSSGRG00000022417	prf1.3 (ENSSGRG00000022416)	stx1b (ENSSGRG00000022262)	ENSSGRG00000022252	gnb3b (ENSSGRG00000022238) #9	tpi1a (ENSSGRG00000021995)	eno2 (ENSSGRG00000019325)	chd4a (ENSSGRG00000019053) #22	zgc:91968 (ENSSGRG00000019048)	stard3 (ENSSGRG00000019046)	ppp1r1b (ENSSGRG00000019044)	CDK12 (ENSSGRG00000019030)	FBXL20 (ENSSGRG00000019024)	ENSSGRG00000019021
Zebrafish	MODERN SPECIES	10	krt91 (ENSDARG00000036830)	krt17 (ENSDARG00000094041)	cyt1 (ENSDARG00000092947)	cyt1l (ENSDARG00000036832)	krt92 (ENSDARG00000036834)	krtt1c19e (ENSDARG00000090268)	ENSDARG00000023082	si:dkeyp-113d7.1 (ENSDARG00000059109)	ENSDARG00000092359	prf1.3 (ENSDARG00000001572)	stx1b (ENSDARG00000000503)	ENSDARG00000075545	gnb3b (ENSDARG00000002696) #9	tpi1a (ENSDARG00000025012)	eno2 (ENSDARG00000014287)	chd4a (ENSDARG00000063535) #22	zgc:91968 (ENSDARG00000011076)	stard3 (ENSDARG00000017809)	ppp1r1b (ENSDARG00000076280)	CDK12 (ENSDARG00000063726)	FBXL20 (ENSDARG00000075567)	ENSDARG00000079310	ENSDARG00000079654	kcnk9 (ENSDARG00000104563)	ENSDARG00000103106	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315)	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES	151	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.b.a.b	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000155088.b.a.a.c #22
Channel catfish	MODERN SPECIES	3	ENSIPUG00000004756	ilf3a (ENSIPUG00000004779)	acp5a (ENSIPUG00000004837)	atp1a3 (ENSIPUG00000004875)	POU2F2 (ENSIPUG00000004924)	Erf (ENSIPUG00000004937)	ENSIPUG00000004959	ENSIPUG00000004980	gnb3b (ENSIPUG00000004991) #9	sdha (ENSIPUG00000005032)	col11a2 (ENSIPUG00000005088)	rxrba (ENSIPUG00000005324)	daxx (ENSIPUG00000005459)	ENO2 (ENSIPUG00000005498)	Cdc42 (ENSIPUG00000005587)	chd4 (ENSIPUG00000005694) #22	ENSIPUG00000005966	oxnad1 (ENSIPUG00000005994)	igf2bp3 (ENSIPUG00000006070)	ccdc126 (ENSIPUG00000006135)	npy (ENSIPUG00000006156)	osbpl3a (ENSIPUG00000006191)	ENSIPUG00000006286	ENSIPUG00000006330	dazl (ENSIPUG00000006376)	tbc1d5 (ENSIPUG00000006394)	ENSIPUG00000006482	ENSIPUG00000006495	kat2b (ENSIPUG00000006521)	ARID1A (ENSIPUG00000006578)	tbxta (ENSIPUG00000006660)
Characiphysae_b	ANCESTRAL SPECIES	61	ENSGT00560000077232.A.a.f	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.b.a.b	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000155088.b.a.a.c #22	ENSGT00730000111747.b	ENSGT00940000154172.b	ENSGT00940000171931	ENSGT00940000168219	ENSGT00940000166691	ENSGT00530000063948.a	ENSGT00940000154489.B.a	ENSGT00950000183065.B.f	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000164368.A	ENSGT00940000156524.a	ENSGT00950000182971.B.b	ENSGT00390000010118.c.b	ENSGT00940000166681
Characoidei	ANCESTRAL SPECIES	82	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.b.a.b	ENSGT00940000166708	ENSGT00940000158852.g.b	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000155088.b.a.a.c #22	ENSGT00730000111747.b	ENSGT00940000154172.b	ENSGT00940000171931	ENSGT00940000166691	ENSGT00530000063948.a	ENSGT00940000154489.B.a	ENSGT00950000183065.B.f	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000164368.A	ENSGT00940000156524.a	ENSGT00950000182971.B.b	ENSGT01060000249203.A	ENSGT00990000204073.a	ENSGT00390000010118.c.b
Red-bellied piranha	MODERN SPECIES	141	ENSPNAG00000010342	atp1a3a (ENSPNAG00000010322)	POU2F2 (ENSPNAG00000010198)	erf (ENSPNAG00000010147)	ENSPNAG00000010103	GSK3A (ENSPNAG00000010051)	ENSPNAG00000010010	GRIK5 (ENSPNAG00000009981)	ENSPNAG00000009848	ENSPNAG00000009833	zgc:174904 (ENSPNAG00000009821)	gnb3b (ENSPNAG00000001335) #9	tpi1a (ENSPNAG00000009778)	eno2 (ENSPNAG00000009740)	ENSPNAG00000009682	chd4a (ENSPNAG00000009629) #22	ENSPNAG00000009488	ENSPNAG00000009419	ENSPNAG00000009373	s100s (ENSPNAG00000009356)	pygo2 (ENSPNAG00000009346)	cgnb (ENSPNAG00000009328)	ENSPNAG00000009288	ubap2l (ENSPNAG00000009258)	hax1 (ENSPNAG00000009172)	aqp10b (ENSPNAG00000006412)	znf687b (ENSPNAG00000009131)	cks1b (ENSPNAG00000009119)	ENSPNAG00000009113
Mexicana tetra	MODERN SPECIES	79								ENSAMXG00000020038	zgc:174904 (ENSAMXG00000036077)	zgc:174904 (ENSAMXG00000041815)	gnb3b (ENSAMXG00000041530) #9	tpi1a (ENSAMXG00000019991)	ENSAMXG00000035605	eno2 (ENSAMXG00000019987)	cdc42l (ENSAMXG00000029705)	chd4a (ENSAMXG00000019969) #22	ENSAMXG00000034868	ENSAMXG00000029851	ENSAMXG00000042556	s100s (ENSAMXG00000019926)	ENSAMXG00000043640	cgnb (ENSAMXG00000029456)	ENSAMXG00000041348	ubap2l (ENSAMXG00000019853)	hax1 (ENSAMXG00000019824)	aqp10b (ENSAMXG00000019801)	znf687b (ENSAMXG00000019781)	cks1b (ENSAMXG00000030309)	ENSAMXG00000019756	ENSAMXG00000041125	si:dkey-266f7.9 (ENSAMXG00000033919)
Electric eel	MODERN SPECIES	59											zgc:174904 (ENSEEEG00000001332)	gnb3b (ENSEEEG00000001333) #9	tpi1a (ENSEEEG00000001334)	eno2 (ENSEEEG00000001335)	cdc42l (ENSEEEG00000001338)	chd4a (ENSEEEG00000001463) #22	ENSEEEG00000006510	ENSEEEG00000006512	s100a11 (ENSEEEG00000006516)	s100u (ENSEEEG00000006518)	s100s (ENSEEEG00000006520)	pygo2 (ENSEEEG00000006522)	cgnb (ENSEEEG00000006524)	ENSEEEG00000006525	ubap2l (ENSEEEG00000006538)	hax1 (ENSEEEG00000006556)	ENSEEEG00000006561	aqp10b (ENSEEEG00000006631)	znf687b (ENSEEEG00000006632)	cks1b (ENSEEEG00000006634)	ENSEEEG00000006637
Characiphysae	ANCESTRAL SPECIES	507															ENSGT00940000159249.a	ENSGT00940000155088.b.a.a.d #22
Channel catfish	MODERN SPECIES		scgn (ENSIPUG00000000072)	CARMIL1 (ENSIPUG00000000071)	ENSIPUG00000000070	TNFRSF11B (ENSIPUG00000000069)	si:ch211-93i7.4 (ENSIPUG00000000068)	MAL2 (ENSIPUG00000000067)	CCN3 (ENSIPUG00000000066)	rbfox1l (ENSIPUG00000000065)	ENSIPUG00000000064	ENSIPUG00000000063	ENSIPUG00000000062	rps9 (ENSIPUG00000000061)	phc1 (ENSIPUG00000000060)	wnt4b (ENSIPUG00000000059)	ENSIPUG00000000057	ENSIPUG00000000056 #22	ENSIPUG00000000055 #22	PTPN6 (ENSIPUG00000000054)	rbp5 (ENSIPUG00000000053)	C1R (ENSIPUG00000000052)	ENSIPUG00000000051	ENSIPUG00000000050	CREB3L4 (ENSIPUG00000000049)	fbxo43 (ENSIPUG00000000048)	spag1b (ENSIPUG00000000047)	malsu1 (ENSIPUG00000000046)	clk2b (ENSIPUG00000000045)	ENSIPUG00000000044	cyp11c1 (ENSIPUG00000000043)	pklr (ENSIPUG00000000042)	ENSIPUG00000000041
Euteleosteomorpha	ANCESTRAL SPECIES	72	ENSGT00940000154370.c.a	ENSGT00390000005284.a	ENSGT00390000015391	ENSGT00940000165364.a.b	ENSGT00940000165134.a.a	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.a	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.d	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000165364.a.b	ENSGT00940000165134.a.b.e	ENSGT00940000177056	ENSGT00940000160115.a.b	ENSGT00940000157292.fc.a	ENSGT00940000159960.c	ENSGT00520000055635.c.b.a	ENSGT00940000161799	ENSGT00940000158852.d	ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.b.k	ENSGT00940000155088.b.a.a #22	ENSGT00400000022326.b.a.b.b.a.b	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00940000159033.n #19	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000156612	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.d	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h
Northern pike	MODERN SPECIES	9	ENSELUG00000020694	pvrl2l (ENSELUG00000020778)	ENSELUG00000020857	POU2F2 (ENSELUG00000000918)	erf (ENSELUG00000020923)	ENSELUG00000020931	gsk3aa (ENSELUG00000020954)	ENSELUG00000020968	GRIK5 (ENSELUG00000021029)	ENSELUG00000021090	zgc:174904 (ENSELUG00000021109)	gnb3b (ENSELUG00000021120) #9	tpi1a (ENSELUG00000021130)	eno2 (ENSELUG00000021163)	cdc42l (ENSELUG00000021203)	chd4a (ENSELUG00000021276) #22	ENSELUG00000029497	ENSELUG00000026707	ENSELUG00000021459	ENSELUG00000034467	vamp1a (ENSELUG00000021474)	IFFO1 (ENSELUG00000021568) ##24	GAPDH (ENSELUG00000021616) #25	GAPDH (ENSELUG00000021642) #25	ing4 (ENSELUG00000021663) #19	ENSELUG00000021741	clcn1a (ENSELUG00000021862)	ENSELUG00000021912	ENSELUG00000021937	slc2a3a (ENSELUG00000021978)	cox6b2 (ENSELUG00000022012)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	93	ENSGT00390000015391.d	ENSGT00940000165364.a.b.a	ENSGT00940000165134.a.b.e.a	ENSGT00940000160115.a.b.b	ENSGT00940000157292.fc.a.a	ENSGT00940000159960.c.e	ENSGT00520000055635.c.b.a.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b	ENSGT00940000158852.d.b.b	ENSGT01100000263479.I.b.c	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b.a #9	ENSGT00390000013354.b.b.c	ENSGT00950000182805.a.a.b.a.c.b.c	ENSGT00940000153675.a.a.a.a.b.k.a	ENSGT00940000155088.b.a.a.e.a #22
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00390000015391.d	ENSGT00940000165364.a.b.a	ENSGT00940000165134.a.b.e.a	ENSGT00940000160115.a.b.b	ENSGT00940000157292.fc.a.a	ENSGT00940000159960.c.e	ENSGT00520000055635.c.b.a.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b	ENSGT00940000158852.d.b.b	ENSGT01100000263479.I.b.c	ENSGT01030000234575.c.a.a.b.e	ENSGT01000000214413.b.a.b.a.b.a #9	ENSGT00390000013354.b.b.c	ENSGT00950000182805.a.a.b.a.c.b.c	ENSGT00940000153675.a.a.a.a.b.k.a	ENSGT00940000155088.b.a.a.e.a #22	ENSGT01100000263533.b.a.a.a.b.a.b	ENSGT00400000022326.b.a.b.b.a.b.a	ENSGT00940000164382.b.a.a	ENSGT00510000046803.b.a.b.d ##24	ENSGT00940000153298.i.b.b.a.a #25	ENSGT00940000153298.i.b.a.b #25	ENSGT00940000159033.n.a #19	ENSGT00950000183106.a.b.a.d	ENSGT00940000157383.g.a.a.b	ENSGT00940000167696.d	ENSGT00940000165997.a.a	ENSGT00940000160313.c	ENSGT00940000164148.a.a.d.a.b	ENSGT01000000221559	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b
Salmo	ANCESTRAL SPECIES	40	ENSGT00390000015391.d	ENSGT00940000165364.a.b.a	ENSGT00940000165134.a.b.e.a	ENSGT00940000160115.a.b.b	ENSGT00940000157292.fc.a.a	ENSGT00940000159960.c.e	ENSGT00520000055635.c.b.a.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b	ENSGT00940000158852.d.b.b	ENSGT01100000263479.I.b.c	ENSGT01030000234575.c.a.a.b.e	ENSGT01000000214413.b.a.b.a.b.a #9	ENSGT00390000013354.b.b.c	ENSGT00950000182805.a.a.b.a.c.b.c	ENSGT00940000153675.a.a.a.a.b.k.a	ENSGT00940000155088.b.a.a.e.a #22	ENSGT01100000263533.b.a.a.a.b.a.b	ENSGT01050000246012.b	ENSGT00400000022326.b.a.b.b.a.b.a	ENSGT00940000164382.b.a.a	ENSGT00510000046803.b.a.b.d ##24	ENSGT00940000153298.i.b.b.a.a #25	ENSGT00940000153298.i.b.a.b #25	ENSGT00940000159033.n.a #19	ENSGT01100000263568.b.a.c.a.g.a.b	ENSGT00950000183106.a.b.a.d	ENSGT00940000157383.g.a.a.b	ENSGT00940000167696.d	ENSGT00940000165997.a.a	ENSGT00940000160313.c	ENSGT00940000164148.a.a.d.a.b
River trout	MODERN SPECIES	27	pvrl2l (ENSSTUG00000032115)	ENSSTUG00000024829	ENSSTUG00000024651	ENSSTUG00000024638	erf (ENSSTUG00000024624)	ENSSTUG00000024445	gsk3aa (ENSSTUG00000024309)	ENSSTUG00000024191	GRIK5 (ENSSTUG00000023338)	ENSSTUG00000023296	zgc:174904 (ENSSTUG00000023258)	gnb3b (ENSSTUG00000023237) #9	tpi1a (ENSSTUG00000023175)	eno2 (ENSSTUG00000023051)	cdc42l (ENSSTUG00000023027)	chd4a (ENSSTUG00000020584) #22	ENSSTUG00000020529	ENSSTUG00000050927	ENSSTUG00000050926	vamp1a (ENSSTUG00000050925)	IFFO1 (ENSSTUG00000050920) ##24	GAPDH (ENSSTUG00000050840) #25	ing4 (ENSSTUG00000050827) #19	ENSSTUG00000050826	ENSSTUG00000050822	clcn1a (ENSSTUG00000050795)	ENSSTUG00000050792	ENSSTUG00000050782	slc2a3a (ENSSTUG00000050766)	cox6b2 (ENSSTUG00000050753)	ENSSTUG00000050751
Atlantic salmon	MODERN SPECIES	19	TCF19 (ENSSSAG00000077187)	pvrl2l (ENSSSAG00000095180)	ENSSSAG00000071358	ENSSSAG00000071136	erf (ENSSSAG00000081836)	ENSSSAG00000071083	gsk3aa (ENSSSAG00000003471)	ENSSSAG00000070636	ENSSSAG00000070559	ENSSSAG00000070515	zgc:174904 (ENSSSAG00000070511)	gnb3b (ENSSSAG00000070506) #9	tpi1a (ENSSSAG00000070498)	eno2 (ENSSSAG00000070432)	ENSSSAG00000074128	chd4a (ENSSSAG00000068761) #22	vamp1a (ENSSSAG00000104713)	ENSSSAG00000119761	ENSSSAG00000068561 ##24	ENSSSAG00000067995 #25	ENSSSAG00000067521 #25	ing4 (ENSSSAG00000118702) #19	ENSSSAG00000116941	ENSSSAG00000067474	clcn1a (ENSSSAG00000057862)	ENSSSAG00000057687	ENSSSAG00000057675	ENSSSAG00000055251	ENSSSAG00000082226	ENSSSAG00000055239	cacng6a (ENSSSAG00000120673)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000165364.a.b.a	ENSGT00940000165134.a.b.e.a	ENSGT00940000160115.a.b.b	ENSGT00940000157292.fc.a.a	ENSGT00940000159960.c.e	ENSGT00520000055635.c.b.a.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b.a	ENSGT00940000158852.d.b.b	ENSGT01100000263479.I.b.c	ENSGT01030000234575.c.a.a.b.e	ENSGT01000000214413.b.a.b.a.b.a #9	ENSGT00390000013354.b.b.c	ENSGT00950000182805.a.a.b.a.c.b.c	ENSGT00940000153675.a.a.a.a.b.k.a	ENSGT00940000155088.b.a.a.e.a #22	ENSGT01100000263533.b.a.a.a.b.a.b	ENSGT00400000022326.b.a.b.b.a.b.a	ENSGT00940000164382.b.a.a	ENSGT00510000046803.b.a.b.d ##24	ENSGT00940000153298.i.b.b.a.a #25	ENSGT00950000183106.a.b.a.d	ENSGT00940000157383.g.a.a.b	ENSGT00940000167696.d	ENSGT00940000165997.a.a	ENSGT00940000160313.c	ENSGT00940000164148.a.a.d.a.b	ENSGT01000000221559	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a.h	ENSGT00390000007786.b.h.b
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000005945	ENSOMYG00000006948	erf (ENSOMYG00000005193)	ENSOMYG00000057559	gsk3aa (ENSOMYG00000046825)	ENSOMYG00000046782	ENSOMYG00000046766	ENSOMYG00000046758	ENSOMYG00000046737	zgc:174904 (ENSOMYG00000046729)	gnb3b (ENSOMYG00000061604) #9	ENSOMYG00000049501	tpi1a (ENSOMYG00000046714)	eno2 (ENSOMYG00000046693)	ENSOMYG00000064568	chd4a (ENSOMYG00000045794) #22	ENSOMYG00000039173	vamp1a (ENSOMYG00000045533)	ENSOMYG00000045527 ##24	ENSOMYG00000045507 #25	ENSOMYG00000045336 #25	ENSOMYG00000045308	ENSOMYG00000055077	ENSOMYG00000045296	clcn1a (ENSOMYG00000044641)	ENSOMYG00000044575	ENSOMYG00000044571	slc2a3a (ENSOMYG00000044559)	ENSOMYG00000044523	ENSOMYG00000058223	ENSOMYG00000056300
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000165134.a.b.e.a	ENSGT00940000160115.a.b.b	ENSGT00940000157292.fc.a.a	ENSGT00940000159960.c.e	ENSGT00520000055635.c.b.a.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b.b	ENSGT01100000263568.b.a.c.b.a.a.b.a.d.b.a	ENSGT00940000158852.d.b.b	ENSGT01100000263479.I.b.c	ENSGT01030000234575.c.a.a.b.e	ENSGT00530000065251.n.a.b	ENSGT01000000214413.b.a.b.a.b.a #9	ENSGT00390000013354.b.b.c	ENSGT00950000182805.a.a.b.a.c.b.c	ENSGT00940000153675.a.a.a.a.b.k.a	ENSGT00940000155088.b.a.a.e.a #22	ENSGT00940000164382.b.a.a	ENSGT00510000046803.b.a.b.d ##24	ENSGT00940000153298.i.b.b.a.a #25	ENSGT00950000183106.a.b.a.d	ENSGT00940000157383.g.a.a.b	ENSGT00940000167696.d	ENSGT00940000165997.a.a	ENSGT00940000160313.c	ENSGT00940000164148.a.a.d.a.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a.h	ENSGT00390000007786.b.h.b	ENSGT01050000244893.c.b.a.g.b.b	ENSGT01050000244961.b.h.d	ENSGT00940000159109.b.a
Coho salmon	MODERN SPECIES	8	ENSOKIG00005048730	POU2F2 (ENSOKIG00005049990)	erf (ENSOKIG00005049996)	ENSOKIG00005034281	gsk3aa (ENSOKIG00005034313)	ENSOKIG00005034429	ENSOKIG00005034458	GRIK5 (ENSOKIG00005034498)	ENSOKIG00005034851	zgc:174904 (ENSOKIG00005034864)	ENSOKIG00005034906	gnb3b (ENSOKIG00005034927) #9	tpi1a (ENSOKIG00005034939)	ENSOKIG00005035021	eno2 (ENSOKIG00005035121)	chd4a (ENSOKIG00005035509) #22	ENSOKIG00005038703	ENSOKIG00005038713	vamp1a (ENSOKIG00005038728)	IFFO1 (ENSOKIG00005038746) ##24	GAPDH (ENSOKIG00005038795) #25	ENSOKIG00005039102	clcn1a (ENSOKIG00005039250)	ENSOKIG00005039967	ENSOKIG00005039998	slc2a3a (ENSOKIG00005040035)	ENSOKIG00005040101	ENSOKIG00005040144	ENSOKIG00005040153	cacng6a (ENSOKIG00005040166)	cacng8a (ENSOKIG00005040182)
Chinook salmon	MODERN SPECIES	4	pvrl2l (ENSOTSG00005038846)	ENSOTSG00005039009	POU2F2 (ENSOTSG00005047096)	erf (ENSOTSG00005047098)	gsk3aa (ENSOTSG00005047101)	ENSOTSG00005047103	ENSOTSG00005047104	GRIK5 (ENSOTSG00005047107)	ENSOTSG00005047112	zgc:174904 (ENSOTSG00005047114)	ENSOTSG00005047115	gnb3b (ENSOTSG00005047116) #9	tpi1a (ENSOTSG00005047118)	eno2 (ENSOTSG00005047120)	cdc42l (ENSOTSG00005047149)	chd4a (ENSOTSG00005047156) #22	vamp1a (ENSOTSG00005047293)	IFFO1 (ENSOTSG00005047300) ##24	GAPDH (ENSOTSG00005047309) #25	ing4 (ENSOTSG00005047348) #19	ENSOTSG00005047350	clcn1a (ENSOTSG00005047382)	ENSOTSG00005047482	ENSOTSG00005047483	slc2a3a (ENSOTSG00005047484)	ENSOTSG00005001646	ENSOTSG00005001684	ENSOTSG00005001886	cacng6a (ENSOTSG00005002188)	cacng8a (ENSOTSG00005002193)	cacng7a (ENSOTSG00005002196)
Huchen	MODERN SPECIES	379	ENSHHUG00000038117	pvrl2l (ENSHHUG00000038104)	ENSHHUG00000037721	POU2F2 (ENSHHUG00000037636)	erf (ENSHHUG00000037631)	CIC (ENSHHUG00000037535)	gsk3aa (ENSHHUG00000037487)	ENSHHUG00000037439	GRIK5 (ENSHHUG00000037389)	ENSHHUG00000037371	zgc:174904 (ENSHHUG00000037363)	gnb3b (ENSHHUG00000037347) #9	tpi1a (ENSHHUG00000037321)	eno2 (ENSHHUG00000037213)	cdc42l (ENSHHUG00000037015)	chd4a (ENSHHUG00000035493) #22
Salmoninae	ANCESTRAL SPECIES	217								ENSGT00940000161799	ENSGT00940000158852.d.b.a	ENSGT01100000263479.I.b.d	ENSGT00980000202540	ENSGT01000000214413.b.a.b.a.b.b #9	ENSGT00390000013354.b.b.d	ENSGT00950000182805.a.a.b.a.c.b.d	ENSGT00940000153675.a.a.a.a.b.k.b	ENSGT00940000155088.b.a.a.e.b #22	ENSGT00400000022326.b.a.b.b.a.b.b	ENSGT01050000246012	ENSGT00400000022326.b.a.b.b.a.b.a	ENSGT00940000164382.b.a.a	ENSGT00510000046803.b.a.b.d ##24	ENSGT00940000153298.i.b.b.a #25	ENSGT00940000159033.n.a #19	ENSGT00950000183106.a.b.a.d	ENSGT00940000157383.g.a.a.b	ENSGT00940000167696.d	ENSGT00940000165997.a.a	ENSGT00940000160313.c	ENSGT01000000221559	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a.h
Salmoninae_a	ANCESTRAL SPECIES	48	ENSGT00940000165134.a.b.e.b	ENSGT00940000177056	ENSGT00940000160115.a.b.a	ENSGT00940000157292.fc.a.b	ENSGT00940000159960.c.f	ENSGT00520000055635.c.b.a.a	ENSGT01100000263568.b.a.c.b.a.a.b.b.a	ENSGT00940000161799	ENSGT00940000158852.d.b.a	ENSGT01100000263479.I.b.d	ENSGT01030000234575.c.a.a.b.f	ENSGT01000000214413.b.a.b.a.b.b #9	ENSGT00390000013354.b.b.d	ENSGT00950000182805.a.a.b.a.c.b.d	ENSGT00940000153675.a.a.a.a.b.k.b	ENSGT00940000155088.b.a.a.e.b #22	ENSGT00400000022326.b.a.b.b.a.b.b	ENSGT01050000246012.a	ENSGT01100000263533.b.a.a.a.b.a.a	ENSGT00940000164382.b.a.b	ENSGT00510000046803.b.a.b.c ##24	ENSGT00940000153298.i.b.b.a.b #25	ENSGT00940000153298.i.b.a.a #25	ENSGT00940000159033.n.b #19	ENSGT01100000263568.b.a.c.a.g.b	ENSGT00950000183106.a.b.a.c	ENSGT00940000157383.g.a.a.a	ENSGT00940000167696.c	ENSGT00940000165997.a.b	ENSGT00940000160313.d	ENSGT00940000164148.a.a.d.a.a
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000165134.a.b.e.b	ENSGT00940000177056	ENSGT00940000160115.a.b.a	ENSGT00940000157292.fc.a.b	ENSGT00940000159960.c.f	ENSGT00520000055635.c.b.a.a	ENSGT01100000263568.b.a.c.b.a.a.b.b.a	ENSGT00940000166708.r	ENSGT00940000158852.d.b.a	ENSGT01100000263479.I.b.d	ENSGT01030000234575.c.a.a.b.f	ENSGT01000000214413.b.a.b.a.b.b #9	ENSGT00390000013354.b.b.d	ENSGT00950000182805.a.a.b.a.c.b.d	ENSGT00940000153675.a.a.a.a.b.k.b	ENSGT00940000155088.b.a.a.e.b #22	ENSGT01100000263533.b.a.a.a.b.a.a	ENSGT00940000164382.b.a.b	ENSGT00510000046803.b.a.b.c ##24	ENSGT00940000153298.i.b.b.a.b #25	ENSGT00940000153298.i.b.a.a #25	ENSGT00940000159033.n.b #19	ENSGT01100000263568.b.a.c.a.g.b	ENSGT00950000183106.a.b.a.c	ENSGT00940000157383.g.a.a.a	ENSGT00940000167696.c	ENSGT00940000165997.a.b	ENSGT00940000160313.d	ENSGT00940000164148.a.a.d.a.a	ENSGT01060000248591.b.a.g	ENSGT00390000007786.b.h.a
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000075697	ENSSSAG00000075009	ENSSSAG00000074913	ENSSSAG00000074904	ENSSSAG00000074899	gsk3aa (ENSSSAG00000074433)	ENSSSAG00000108670	ENSSSAG00000074408	ENSSSAG00000074232	ENSSSAG00000086881	ENSSSAG00000074205	gnb3b (ENSSSAG00000074198) #9	tpi1a (ENSSSAG00000074195)	enog (ENSSSAG00000074139)	CDC42 (ENSSSAG00000113384)	chd4a (ENSSSAG00000073889) #22	ENSSSAG00000073862	vamp1a (ENSSSAG00000073860)	ENSSSAG00000073838 ##24	ENSSSAG00000073832 #25	ENSSSAG00000073639 #25	ing4 (ENSSSAG00000073628) #19	ENSSSAG00000082474	ENSSSAG00000073626	clcn1a (ENSSSAG00000069350)	ENSSSAG00000069235	ENSSSAG00000069229	slc2a3a (ENSSSAG00000067915)	ENSSSAG00000067873	ENSSSAG00000067869	cacng6a (ENSSSAG00000067866)
River trout	MODERN SPECIES	29	ENSSTUG00000022535	ENSSTUG00000024062	POU2F2 (ENSSTUG00000024074)	erf (ENSSTUG00000024152)	ENSSTUG00000024169	gsk3aa (ENSSTUG00000024233)	ENSSTUG00000024271	ENSSTUG00000024283	GRIK5 (ENSSTUG00000024354)	ENSSTUG00000024500	zgc:174904 (ENSSTUG00000024517)	gnb3b (ENSSTUG00000024538) #9	tpi1a (ENSSTUG00000024575)	eno2 (ENSSTUG00000024605)	ENSSTUG00000024695	chd4a (ENSSTUG00000024836) #22	ENSSTUG00000027936	ENSSTUG00000027940	ENSSTUG00000027952	vamp1a (ENSSTUG00000027961)	IFFO1 (ENSSTUG00000027984) ##24	GAPDH (ENSSTUG00000028027) #25	ENSSTUG00000028374 #25	ing4 (ENSSTUG00000028383) #19	ENSSTUG00000028437	ENSSTUG00000028449	clcn1a (ENSSTUG00000028484)	ENSSTUG00000029048	ENSSTUG00000029065	slc2a3a (ENSSTUG00000029101)	cox6b2 (ENSSTUG00000029180)
Oncorhynchus	ANCESTRAL SPECIES	40	ENSGT00940000165134.a.b.e.b	ENSGT00940000177056	ENSGT00940000160115.a.b.a	ENSGT00940000157292.fc.a.b	ENSGT00940000159960.c.f	ENSGT00520000055635.c.b.a.a	ENSGT01100000263568.b.a.c.b.a.a.b.b.a	ENSGT00940000166708.p	ENSGT00940000158852.d.b.a	ENSGT01100000263479.I.b.d	ENSGT01030000234575.c.a.a.b.f	ENSGT01000000214413.b.a.b.a.b.b #9	ENSGT00390000013354.b.b.d	ENSGT00950000182805.a.a.b.a.c.b.d	ENSGT00940000153675.a.a.a.a.b.k.b	ENSGT00940000155088.b.a.a.e.b #22	ENSGT00400000022326.b.a.b.b.a.b.b	ENSGT01050000246012.a	ENSGT01100000263533.b.a.a.a.b.a.a	ENSGT00940000164382.b.a.b	ENSGT00510000046803.b.a.b.c ##24	ENSGT00940000153298.i.b.b.b #25	ENSGT00940000153298.i.b.a.a #25	ENSGT00940000159033.n.b #19	ENSGT01100000263568.b.a.c.a.g.b	ENSGT00950000183106.a.b.a.c	ENSGT00940000157383.g.a.a.a	ENSGT00940000167696.c	ENSGT00940000165997.a.b	ENSGT00940000160313.d	ENSGT00940000164148.a.a.d.a.a
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000049286	ENSOMYG00000026021	ENSOMYG00000026058	erf (ENSOMYG00000059038)	ENSOMYG00000026103	gsk3aa (ENSOMYG00000026153)	ENSOMYG00000026227	ENSOMYG00000026250	ENSOMYG00000026360	ENSOMYG00000026537	zgc:174904 (ENSOMYG00000026548)	gnb3b (ENSOMYG00000052956) #9	tpi1a (ENSOMYG00000026581)	eno2 (ENSOMYG00000026831)	ENSOMYG00000046676	chd4a (ENSOMYG00000028964) #22	ENSOMYG00000023806	ENSOMYG00000052949	ENSOMYG00000039188	vamp1a (ENSOMYG00000052501)	ENSOMYG00000039216 ##24	ENSOMYG00000039944 #25	ing4 (ENSOMYG00000041991) #19	ENSOMYG00000042001	ENSOMYG00000042009	clcn1a (ENSOMYG00000042038)	ENSOMYG00000042137	ENSOMYG00000042110	slc2a3a (ENSOMYG00000042172)	ENSOMYG00000042267	ENSOMYG00000055241
Oncorhynchus_a	ANCESTRAL SPECIES	45	ENSGT00940000165364.a.b.b	ENSGT00940000165134.a.b.e.b	ENSGT00940000177056	ENSGT00940000160115.a.b.a	ENSGT00940000157292.fc.a.b	ENSGT00520000055635.c.b.a.a	ENSGT01100000263568.b.a.c.b.a.a.b.b.a	ENSGT00940000166708.p	ENSGT00940000158852.d.b.a	ENSGT01100000263479.I.b.d	ENSGT01030000234575.c.a.a.b.f	ENSGT01000000214413.b.a.b.a.b.b #9	ENSGT00390000013354.b.b.d	ENSGT00950000182805.a.a.b.a.c.b.d	ENSGT00940000153675.a.a.a.a.b.k.b	ENSGT00940000155088.b.a.a.e.b #22	ENSGT00400000022326.b.a.b.b.a.b.b	ENSGT01050000246012.a	ENSGT00940000159960.c.f	ENSGT01100000263533.b.a.a.a.b.a.a	ENSGT00940000164382.b.a.b	ENSGT00510000046803.b.a.b.c ##24	ENSGT00940000153298.i.b.b.b #25	ENSGT00940000159033.n.b #19	ENSGT01100000263568.b.a.c.a.g.b	ENSGT00950000183106.a.b.a.c	ENSGT00940000157383.g.a.a.a	ENSGT00940000167696.c	ENSGT00940000165997.a.b	ENSGT00940000160313.d	ENSGT00940000164148.a.a.d.b
Coho salmon	MODERN SPECIES	5	POU2F2 (ENSOKIG00005021189)	ENSOKIG00005021175	erf (ENSOKIG00005021168)	ENSOKIG00005021156	gsk3aa (ENSOKIG00005021012)	ENSOKIG00005020963	ENSOKIG00005020917	GRIK5 (ENSOKIG00005020072)	ENSOKIG00005019991	ENSOKIG00005019967	gnb3b (ENSOKIG00005019956) #9	tpi1a (ENSOKIG00005019895)	ENSOKIG00005019885	eno2 (ENSOKIG00005019807)	ENSOKIG00005019769	chd4a (ENSOKIG00005017787) #22	ENSOKIG00005017624	ENSOKIG00005017616	ENSOKIG00005017588	vamp1a (ENSOKIG00005017578)	IFFO1 (ENSOKIG00005017552) ##24	GAPDH (ENSOKIG00005016307) #25	ing4 (ENSOKIG00005016193) #19	ENSOKIG00005016182	ENSOKIG00005016158	clcn1a (ENSOKIG00005015872)	ENSOKIG00005015828	ENSOKIG00005015819	slc2a3a (ENSOKIG00005015681)	ENSOKIG00005015642	ENSOKIG00005015634
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	24	ENSOTSG00005023308	pvrl2l (ENSOTSG00005023309)	ENSOTSG00005023324	ENSOTSG00005023808	POU2F2 (ENSOTSG00005023809)	erf (ENSOTSG00005023811)	gsk3aa (ENSOTSG00005023812)	ENSOTSG00005023814	GRIK5 (ENSOTSG00005023815)	ENSOTSG00005023816	zgc:174904 (ENSOTSG00005023817)	gnb3b (ENSOTSG00005002982) #9	tpi1a (ENSOTSG00005002996)	eno2 (ENSOTSG00005003043)	cdc42l (ENSOTSG00005003670)	chd4a (ENSOTSG00005003854) #22	ENSOTSG00005020235	vamp1a (ENSOTSG00005020239)	IFFO1 (ENSOTSG00005020252) ##24	ing4 (ENSOTSG00005020409) #19	ENSOTSG00005020411	ENSOTSG00005020412	clcn1a (ENSOTSG00005020414)	ENSOTSG00005020962	ENSOTSG00005020964	slc2a3a (ENSOTSG00005020971)	cox6b2 (ENSOTSG00005021396)	ENSOTSG00005021401	cacng6a (ENSOTSG00005021404)	cacng8a (ENSOTSG00005021408)	cacng7a (ENSOTSG00005021410)
Chinook salmon	MODERN SPECIES	45	ENSOTSG00005045402	pvrl2l (ENSOTSG00005045400)	ENSOTSG00005045350	POU2F2 (ENSOTSG00005045349)	erf (ENSOTSG00005045348)	ENSOTSG00005045346	gsk3aa (ENSOTSG00005045343)	ENSOTSG00005045342	GRIK5 (ENSOTSG00005045340)	ENSOTSG00005045337	zgc:174904 (ENSOTSG00005045336)	gnb3b (ENSOTSG00005045335) #9	tpi1a (ENSOTSG00005045334)	eno2 (ENSOTSG00005045200)	cdc42l (ENSOTSG00005045199)	chd4a (ENSOTSG00005036824) #22	ENSOTSG00005036801	IFFO1 (ENSOTSG00005036791) ##24	ing4 (ENSOTSG00005036787) #19	ENSOTSG00005036786	ENSOTSG00005036785	ENSOTSG00005036764	ENSOTSG00005036763	slc2a3a (ENSOTSG00005036754)	cox6b2 (ENSOTSG00005036750)	ENSOTSG00005036748	cacng6a (ENSOTSG00005036747)	cacng8a (ENSOTSG00005036745)	cacng7a (ENSOTSG00005036744)	ENSOTSG00005036742	dbpa (ENSOTSG00005036737)
Huchen	MODERN SPECIES	312									GRIK5 (ENSHHUG00000033139)	ENSHHUG00000033124	ENSHHUG00000033092	gnb3b (ENSHHUG00000033087) #9	tpi1a (ENSHHUG00000033051)	eno2 (ENSHHUG00000032834)	cdc42l (ENSHHUG00000032782)	chd4a (ENSHHUG00000032400) #22	ENSHHUG00000032397	ENSHHUG00000032393	ENSHHUG00000032390	vamp1a (ENSHHUG00000032386)	IFFO1 (ENSHHUG00000032381) ##24	GAPDH (ENSHHUG00000027363) #25	ing4 (ENSHHUG00000027252) #19	ENSHHUG00000027238	ENSHHUG00000027232	clcn1a (ENSHHUG00000027212)	ENSHHUG00000027207	ENSHHUG00000027194	slc2a3a (ENSHHUG00000027067)	cox6b2 (ENSHHUG00000027027)	ENSHHUG00000027026
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.f #22
Huchen	MODERN SPECIES	11207																ENSHHUG00000013750 #22
Acanthomorphata	ANCESTRAL SPECIES	128										ENSGT01100000263479.I.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.d	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00940000178794	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h
Cod	MODERN SPECIES	14	ENSGMOG00000031140	ENSGMOG00000010738	ENSGMOG00000033766	ENSGMOG00000012804	tap2a (ENSGMOG00000005729)	psmb9a (ENSGMOG00000005664)	psmb12 (ENSGMOG00000005681)	psmb13a (ENSGMOG00000032447)	psmb8a (ENSGMOG00000005704)	ENSGMOG00000027523	ENSGMOG00000034582	ENSGMOG00000031224	ENSGMOG00000024518	ENSGMOG00000028858	ENSGMOG00000025818	ENSGMOG00000017923 #22	ENSGMOG00000037043	ENSGMOG00000026526 ##24	ENSGMOG00000015445 #25	ENSGMOG00000022208	ENSGMOG00000035267	ENSGMOG00000030329	ENSGMOG00000027191	ENSGMOG00000036562	slc2a3a (ENSGMOG00000023964)	ENSGMOG00000026777	ENSGMOG00000035093	ENSGMOG00000023309	ENSGMOG00000005608	ENSGMOG00000031882	dbpa (ENSGMOG00000022826)
Euacanthomorphacea	ANCESTRAL SPECIES	24											ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Pinecone sodierfish	MODERN SPECIES	2	ENSMMDG00005008048	ENSMMDG00005008050	ENSMMDG00005008053	ENSMMDG00005008054	ENSMMDG00005008060	ENSMMDG00005008064	VPS52 (ENSMMDG00005008070)	rps18 (ENSMMDG00005008103)	RING1 (ENSMMDG00005008119)	GRIK5 (ENSMMDG00005008125)	ENSMMDG00005008135	gnb3b (ENSMMDG00005008136) #9	tpi1a (ENSMMDG00005008138)	eno2 (ENSMMDG00005008148)	cdc42l (ENSMMDG00005008593)	chd4a (ENSMMDG00005008844) #22	vamp1a (ENSMMDG00005023253)	IFFO1 (ENSMMDG00005023259) ##24	GAPDH (ENSMMDG00005023310) #25	ENSMMDG00005023751	ENSMMDG00005023752	clcn1a (ENSMMDG00005023754)	ENSMMDG00005023757	ENSMMDG00005023760	slc2a3a (ENSMMDG00005023763)	cox6b2 (ENSMMDG00005023766)	ENSMMDG00005023771	cacng6a (ENSMMDG00005023775)	cacng8a (ENSMMDG00005023781)	cacng7a (ENSMMDG00005023785)	ENSMMDG00005023788
Percomorphaceae	ANCESTRAL SPECIES	10											ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Tiger tail seahorse	MODERN SPECIES	393	SH3BP5L (ENSHCOG00000018034)	GABBR1 (ENSHCOG00000018084)	tnfa (ENSHCOG00000000590)	ENSHCOG00000018134	ENSHCOG00000018165	rnf139 (ENSHCOG00000018198)	ENSHCOG00000018232	epn1b (ENSHCOG00000018240)	si:ch211-232m10.6 (ENSHCOG00000018277)	rcvrn3 (ENSHCOG00000018295)	tmem238a (ENSHCOG00000018302)	ccdc106b (ENSHCOG00000018312)	eno2 (ENSHCOG00000018346)	cdc42l (ENSHCOG00000018382)	ENSHCOG00000018462	ENSHCOG00000018479 #22	slc2a3a (ENSHCOG00000018506)	ENSHCOG00000018517	ENSHCOG00000018532	vamp1a (ENSHCOG00000018539)	ENSHCOG00000018547	cacng6a (ENSHCOG00000018551)	cacng8a (ENSHCOG00000018575)	ENSHCOG00000018601	dbpa (ENSHCOG00000018611)	ENSHCOG00000018630	ENSHCOG00000018650	gnb3b (ENSHCOG00000018665) #9	ndufb9 (ENSHCOG00000000494)	tatdn1 (ENSHCOG00000018701)	ENSHCOG00000018732
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01100000263549.j.b.h	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b	ENSGT01090000260033.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000155167.b.a.b	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000156612	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.b	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.a.b.a.a	ENSGT01030000234589.g.a.e.a	ENSGT01100000263549.j.a	ENSGT01100000263549.j.b.h	ENSGT00940000153094	ENSGT00940000153770.k	ENSGT01100000263549.j.b.g.a	ENSGT00940000153770.l.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000156612	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h
Oryzias	ANCESTRAL SPECIES	23	ENSGT00940000165504	ENSGT00940000165375	ENSGT00940000159897	ENSGT00940000155431.b	ENSGT01100000263475.g.b.i.a.b	ENSGT00940000153385.b.a.b.fd.a	ENSGT00940000160668	ENSGT00940000159762	ENSGT00940000159208.A	ENSGT01100000263475.g.b.i.b.b.a.a.p	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00390000000062.a	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00940000165504	ENSGT00940000165375.j	ENSGT00940000159897	ENSGT00940000155431.b	ENSGT01100000263475.g.b.i.a.b	ENSGT00940000153385.b.a.b.fd.a	ENSGT00940000160668	ENSGT00940000159762	ENSGT00940000159208.A	ENSGT01100000263475.g.b.i.b.b.a.a.p	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00390000000062.a	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Indian medaka	MODERN SPECIES	3	psmb13a (ENSOMEG00000017102)	psmb12 (ENSOMEG00000017077)	psmb9a (ENSOMEG00000017066)	tap2a (ENSOMEG00000017039)	ENSOMEG00000016942	brd2a (ENSOMEG00000016921)	hsd17b8 (ENSOMEG00000016888)	col11a2 (ENSOMEG00000016833)	rxrba (ENSOMEG00000016683)	ENSOMEG00000016603	ENSOMEG00000016597	gnb3b (ENSOMEG00000016580) #9	tpi1a (ENSOMEG00000016550)	eno2 (ENSOMEG00000016496)	cdc42l (ENSOMEG00000016451)	chd4a (ENSOMEG00000016394) #22	vamp1a (ENSOMEG00000016268)	IFFO1 (ENSOMEG00000016246) ##24	sycp3 (ENSOMEG00000016210)	ENSOMEG00000016169	clcn1a (ENSOMEG00000016076)	ENSOMEG00000016002	ENSOMEG00000015954	slc2a3a (ENSOMEG00000015908)	ENSOMEG00000015816	ENSOMEG00000015784	cacng6a (ENSOMEG00000015774)	cacng8a (ENSOMEG00000015758)	cacng7a (ENSOMEG00000015745)	ENSOMEG00000015715	dbpa (ENSOMEG00000015653)
Javanese ricefish	MODERN SPECIES	2	psmb8a (ENSOJAG00000020691)	psmb13a (ENSOJAG00000020701)	psmb12 (ENSOJAG00000020756)	psmb9a (ENSOJAG00000020812)	tap2a (ENSOJAG00000020861)	ENSOJAG00000020957	brd2a (ENSOJAG00000020985)	hsd17b8 (ENSOJAG00000021033)	col11a2 (ENSOJAG00000021077)	rxrba (ENSOJAG00000021121)	ENSOJAG00000021309	gnb3b (ENSOJAG00000021314) #9	tpi1a (ENSOJAG00000021332)	eno2 (ENSOJAG00000001771)	cdc42l (ENSOJAG00000001852)	chd4a (ENSOJAG00000001976) #22	ENSOJAG00000002551	IFFO1 (ENSOJAG00000002626) ##24	sycp3 (ENSOJAG00000002637)	ENSOJAG00000002666	clcn1a (ENSOJAG00000002727)	ENSOJAG00000003000	ENSOJAG00000003019	slc2a3a (ENSOJAG00000003050)	ENSOJAG00000003081	ENSOJAG00000003086	cacng6a (ENSOJAG00000003092)	cacng8a (ENSOJAG00000003100)	cacng7a (ENSOJAG00000003117)	ENSOJAG00000003128	ENSOJAG00000003133
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00940000165504	ENSGT00940000165375	ENSGT00940000159897	ENSGT00940000155431.b	ENSGT01100000263475.g.b.i.a.b	ENSGT00940000153385.b.a.b.fd.a	ENSGT00940000160668	ENSGT00940000159762	ENSGT00940000159208.A	ENSGT01100000263475.g.b.i.b.b.a.a.p	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00390000000062.a	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a
Japanese Medaka HdrR	MODERN SPECIES	2	psmb12 (ENSORLG00000006662)	psmb9a (ENSORLG00000006646)	tap2a (ENSORLG00000006618)	ENSORLG00000006575	ENSORLG00000023457	brd2a (ENSORLG00000006565)	hsd17b8 (ENSORLG00000006546)	col11a2 (ENSORLG00000006525)	rxrba (ENSORLG00000006476)	ENSORLG00000006435	ENSORLG00000006423	gnb3b (ENSORLG00000006403) #9	tpi1a (ENSORLG00000006391)	eno2 (ENSORLG00000006369)	ENSORLG00000006335	chd4a (ENSORLG00000006310) #22	vamp1a (ENSORLG00000006193)	ENSORLG00000006171 ##24	ENSORLG00000006147	ENSORLG00000006141	clcn1a (ENSORLG00000006134)	ENSORLG00000022766	ENSORLG00000006115	slc2a3a (ENSORLG00000006093)	ENSORLG00000006070	ENSORLG00000030444	cacng6a (ENSORLG00000006043)	cacng8a (ENSORLG00000006028)	cacng7a (ENSORLG00000022053)	ENSORLG00000005999	ENSORLG00000023837
Chinese medaka	MODERN SPECIES	1100				psmb9a (ENSOSIG00000007131)	tap2a (ENSOSIG00000007045)	ENSOSIG00000007042	brd2a (ENSOSIG00000007041)	hsd17b8 (ENSOSIG00000007040)	col11a2 (ENSOSIG00000003116)	ENSOSIG00000000905	ENSOSIG00000000863	gnb3b (ENSOSIG00000000843) #9	tpi1a (ENSOSIG00000000826)	eno2 (ENSOSIG00000023779)	cdc42l (ENSOSIG00000023771)	chd4a (ENSOSIG00000023642) #22	vamp1a (ENSOSIG00000023569)	IFFO1 (ENSOSIG00000023568) ##24	sycp3 (ENSOSIG00000023567)	ENSOSIG00000023566	clcn1a (ENSOSIG00000023230)	ENSOSIG00000023077	ENSOSIG00000023075	slc2a3a (ENSOSIG00000023062)	cox6b2 (ENSOSIG00000023039)	ENSOSIG00000023038	cacng6a (ENSOSIG00000023036)	cacng8a (ENSOSIG00000023034)	cacng7a (ENSOSIG00000023028)
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.c.a	ENSGT00940000153770.l.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.d	ENSGT01030000234589.g.a.f	ENSGT01100000263549.j.a	ENSGT01100000263549.j.b.h	ENSGT00940000153770.l.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000156612	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h
Cyprinodontoidei	ANCESTRAL SPECIES	31										ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.b.a.a.b	ENSGT01030000234589.g.a.f.e.a.a.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.d	ENSGT01030000234589.g.a.f.e.a.a.b.b.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.a.a.b.a	ENSGT01030000234589.g.a.f.e.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.b.a.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.a.a.b.b	ENSGT01030000234589.g.a.f.e.a.a.b.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Poecilia	ANCESTRAL SPECIES	38						ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.b.b.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.b.a.b	ENSGT01030000234589.g.a.f.e.a.a.b.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
NAME_6	ANCESTRAL SPECIES	116								ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b.d.a.b.a.b	ENSGT01030000234589.g.a.f.e.a.a.b.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a
Amazon molly	MODERN SPECIES	408						ENSPFOG00000010110	ENSPFOG00000010102	ENSPFOG00000022868	ENSPFOG00000020411	ENSPFOG00000010088	ENSPFOG00000010063	gnb3b (ENSPFOG00000010022) #9	tpi1a (ENSPFOG00000009922)	eno2 (ENSPFOG00000009663)	cdc42l (ENSPFOG00000009652)	chd4a (ENSPFOG00000009089) #22	vamp1a (ENSPFOG00000009077)	IFFO1 (ENSPFOG00000009010) ##24	GAPDH (ENSPFOG00000008901) #25	ENSPFOG00000008843	clcn1a (ENSPFOG00000008368)	ENSPFOG00000008308	ENSPFOG00000008249	slc2a3a (ENSPFOG00000008108)	ENSPFOG00000008098	ENSPFOG00000007981	cacng6a (ENSPFOG00000007911)	cacng8a (ENSPFOG00000007865)	cacng7a (ENSPFOG00000007821)	ENSPFOG00000007486	dbpa (ENSPFOG00000007430)
Sailfin molly	MODERN SPECIES	499									ENSPLAG00000000278	ENSPLAG00000012482	ENSPLAG00000012493	gnb3b (ENSPLAG00000012547) #9	tpi1a (ENSPLAG00000012565)	eno2 (ENSPLAG00000012609)	cdc42l (ENSPLAG00000012623)	chd4a (ENSPLAG00000012712) #22	vamp1a (ENSPLAG00000012737)	IFFO1 (ENSPLAG00000012749) ##24	GAPDH (ENSPLAG00000000772) #25	ENSPLAG00000012818	ENSPLAG00000012838	ENSPLAG00000012849	ENSPLAG00000012859	slc2a3a (ENSPLAG00000012887)	cox6b2 (ENSPLAG00000012897)	ENSPLAG00000000310
Guppy	MODERN SPECIES	441	ENSPREG00000001661	ENSPREG00000001640	ENSPREG00000001632	ENSPREG00000001619	ENSPREG00000001601	ENSPREG00000001553	ENSPREG00000001539	ENSPREG00000001522	ENSPREG00000001494	ENSPREG00000001483	ENSPREG00000001471	gnb3b (ENSPREG00000001456) #9	tpi1a (ENSPREG00000001427)	eno2 (ENSPREG00000001377)	cdc42l (ENSPREG00000001350)	chd4a (ENSPREG00000001202) #22	vamp1a (ENSPREG00000001178)	IFFO1 (ENSPREG00000001168) ##24	GAPDH (ENSPREG00000001118) #25	ENSPREG00000001108	ENSPREG00000001093	clcn1a (ENSPREG00000001065)	ENSPREG00000001050	ENSPREG00000001037	slc2a3a (ENSPREG00000000986)	ENSPREG00000000971	cacng6a (ENSPREG00000000969)	cacng8a (ENSPREG00000000929)	cacng7a (ENSPREG00000000897)	ENSPREG00000000885	dbpa (ENSPREG00000000847)
Platyfish	MODERN SPECIES	4	ENSXMAG00000022669	ENSXMAG00000025769	ENSXMAG00000021075	ENSXMAG00000029225	ENSXMAG00000025758	ENSXMAG00000028235	ENSXMAG00000021678	ENSXMAG00000025614	ENSXMAG00000020260	ENSXMAG00000027060	ENSXMAG00000001225	gnb3b (ENSXMAG00000001191) #9	tpi1a (ENSXMAG00000001163)	eno2 (ENSXMAG00000001110)	cdc42l (ENSXMAG00000030031)	chd4a (ENSXMAG00000001037) #22	vamp1a (ENSXMAG00000025157)	IFFO1 (ENSXMAG00000001023) ##24	GAPDH (ENSXMAG00000001007) #25	ENSXMAG00000001004	ENSXMAG00000025832	ENSXMAG00000026955	ENSXMAG00000000955	slc2a3a (ENSXMAG00000000924)	ENSXMAG00000000922	ENSXMAG00000029120	ENSXMAG00000025047	cacng6a (ENSXMAG00000000905)	cacng8a (ENSXMAG00000022436)	cacng7a (ENSXMAG00000000890)	ENSXMAG00000014145
NAME_4	ANCESTRAL SPECIES	150											ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Mummichog	MODERN SPECIES	2323					ENSFHEG00000002086	ENSFHEG00000002077	ENSFHEG00000002070	ENSFHEG00000002065	ENSFHEG00000002060	ENSFHEG00000002056	gnb3b (ENSFHEG00000002045) #9	tpi1a (ENSFHEG00000002037)	eno2 (ENSFHEG00000002030)	ENSFHEG00000002024	ENSFHEG00000002021	chd4a (ENSFHEG00000002013) #22	vamp1a (ENSFHEG00000001992)	IFFO1 (ENSFHEG00000001981) ##24	GAPDH (ENSFHEG00000001966) #25	ENSFHEG00000001946	clcn1a (ENSFHEG00000001934)	ENSFHEG00000001906	ENSFHEG00000001900	slc2a3a (ENSFHEG00000001861)	cox6b2 (ENSFHEG00000001729)	ENSFHEG00000001727	cacng6a (ENSFHEG00000001723)	cacng8a (ENSFHEG00000001719)	cacng7a (ENSFHEG00000001713)	dbpa (ENSFHEG00000001710)	ENSFHEG00000001706
Sheepshead minnow	MODERN SPECIES	255	ENSCVAG00000005397	ENSCVAG00000005304	ENSCVAG00000005296	ENSCVAG00000005264	ENSCVAG00000005251	ENSCVAG00000005205	ENSCVAG00000005195	ENSCVAG00000005172	ENSCVAG00000005159	ENSCVAG00000005148	ENSCVAG00000005136	gnb3b (ENSCVAG00000005124) #9	tpi1a (ENSCVAG00000005106)	eno2 (ENSCVAG00000005068)	ENSCVAG00000005006	chd4a (ENSCVAG00000004940) #22	vamp1a (ENSCVAG00000003455)	IFFO1 (ENSCVAG00000003445) ##24	GAPDH (ENSCVAG00000003432) #25	ADAMTS18 (ENSCVAG00000003402)
Aplocheiloidei	ANCESTRAL SPECIES	112											ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000160313	ENSGT00940000164148.a.a.d	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00530000064557.b
Mangrove rivulus	MODERN SPECIES	103	slc39a7 (ENSKMAG00000019682)	ENSKMAG00000019658	ENSKMAG00000019637	ENSKMAG00000019625	ENSKMAG00000019596	ENSKMAG00000019581	necap1 (ENSKMAG00000019560)	epn1b (ENSKMAG00000019541)	si:ch211-232m10.6 (ENSKMAG00000019523)	rcvrn3 (ENSKMAG00000019513)	ENSKMAG00000019488	gnb3b (ENSKMAG00000019467) #9	tpi1a (ENSKMAG00000019444)	eno2 (ENSKMAG00000019388)	cdc42l (ENSKMAG00000019361)	chd4a (ENSKMAG00000019286) #22	vamp1a (ENSKMAG00000019252)	IFFO1 (ENSKMAG00000019224) ##24	GAPDH (ENSKMAG00000019144) #25	FAM131B (ENSKMAG00000019114)	clcn1a (ENSKMAG00000019056)	ENSKMAG00000019019	ENSKMAG00000018997	slc2a3a (ENSKMAG00000018976)	cox6b2 (ENSKMAG00000018951)	ENSKMAG00000018933	cacng6a (ENSKMAG00000018912)	cacng8a (ENSKMAG00000018899)	cacng7a (ENSKMAG00000018871)	ENSKMAG00000018820	dbpa (ENSKMAG00000018798)
Turquoise killifish	MODERN SPECIES	135											ENSNFUG00015015828	ENSNFUG00015015839	ENSNFUG00015015844	ENSNFUG00015015848	ENSNFUG00015015854	ENSNFUG00015015859 #22	ENSNFUG00015015887
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000155167.b.a.b	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00390000011559	ENSGT00940000166893	ENSGT00940000158255	ENSGT00630000089917	ENSGT00940000162418	ENSGT00940000159459	ENSGT00940000160576	ENSGT00390000014107.a.b	ENSGT00940000167426.a	ENSGT00940000167426.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000156612	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Pomacentridae_A	ANCESTRAL SPECIES	109										ENSGT01100000263533.b.b.a.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a.e.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000156612	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Amphiprion	ANCESTRAL SPECIES	101	ENSGT00940000158255	ENSGT00630000089917	ENSGT00940000162418	ENSGT00940000159459	ENSGT00940000160576	ENSGT00390000014107.a.b	ENSGT00940000167426.a	ENSGT00940000167426.b	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.a	ENSGT01100000263533.b.b.a.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a.e.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a
Orange clownfish	MODERN SPECIES	8	zbtb12.2 (ENSAPEG00000001214)	ENSAPEG00000001217	ENSAPEG00000001253	slc44a4 (ENSAPEG00000001277)	RNF5 (ENSAPEG00000001310)	ENSAPEG00000001383	ENSAPEG00000001504	ENSAPEG00000001546	ENSAPEG00000001556	ENSAPEG00000001558	gnb3b (ENSAPEG00000001566) #9	ENSAPEG00000001601	eno2 (ENSAPEG00000001636)	ENSAPEG00000001699	cdc42l (ENSAPEG00000001722)	chd4a (ENSAPEG00000001757) #22	vamp1a (ENSAPEG00000001906)	ENSAPEG00000001921	IFFO1 (ENSAPEG00000001956) ##24	GAPDH (ENSAPEG00000002063) #25	FAM131B (ENSAPEG00000002116)	ENSAPEG00000002174	ENSAPEG00000002197	ENSAPEG00000002220	ENSAPEG00000002257	ENSAPEG00000002278	slc2a3a (ENSAPEG00000002296)	cox6b2 (ENSAPEG00000002333)	ENSAPEG00000002353	cacng6a (ENSAPEG00000002362)	cacng8a (ENSAPEG00000002370)
Clown anemonefish	MODERN SPECIES	1150															cdc42l (ENSAOCG00000016445)	CHD4 (ENSAOCG00000016412) #22	vamp1a (ENSAOCG00000016120)
Spiny chromis	MODERN SPECIES	2819																chd4a (ENSAPOG00000008935) #22	vamp1a (ENSAPOG00000008412)
Bicolor damselfish	MODERN SPECIES	460	zbtb12.2 (ENSSPAG00000012967)	ENSSPAG00000012975	ENSSPAG00000012987	slc44a4 (ENSSPAG00000012998)	RNF5 (ENSSPAG00000013024)	ENSSPAG00000013048	ENSSPAG00000013061	ENSSPAG00000013084	ENSSPAG00000013109	ENSSPAG00000013118	ENSSPAG00000013129	gnb3b (ENSSPAG00000013181) #9	tpi1a (ENSSPAG00000013875)	eno2 (ENSSPAG00000013903)	cdc42l (ENSSPAG00000013949)	chd4a (ENSSPAG00000013983) #22	vamp1a (ENSSPAG00000014065)	IFFO1 (ENSSPAG00000014078) ##24	ENSSPAG00000014107 #25	FAM131B (ENSSPAG00000014146)	ENSSPAG00000014177	ENSSPAG00000014189	ENSSPAG00000014213
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.a.b	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Burton s mouthbrooder	MODERN SPECIES	430														CDC42 (ENSHBUG00000018481)	ENSHBUG00000018498	chd4a (ENSHBUG00000019146) #22	vamp1a (ENSHBUG00000000975)	IFFO1 (ENSHBUG00000019238) ##24	GAPDH (ENSHBUG00000019289) #25	FAM131B (ENSHBUG00000019339)	clcn1a (ENSHBUG00000019359)	ENSHBUG00000019374	ENSHBUG00000019414	slc2a3a (ENSHBUG00000019447)	cox6b2 (ENSHBUG00000019464)	ENSHBUG00000019480	cacng6a (ENSHBUG00000019495)	cacng8a (ENSHBUG00000019531)	cacng7a (ENSHBUG00000019562)	ENSHBUG00000019571	dbpa (ENSHBUG00000019610)
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000176860.g.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
P. nyererei	MODERN SPECIES	450								ENSPNYG00000001953	ENSPNYG00000001970	ENSPNYG00000001980	gnb3b (ENSPNYG00000002013) #9	tpi1a (ENSPNYG00000002511)	eno2 (ENSPNYG00000002540)	cdc42l (ENSPNYG00000002586)	cdc42l (ENSPNYG00000002622)	chd4a (ENSPNYG00000002663) #22	vamp1a (ENSPNYG00000002787)	IFFO1 (ENSPNYG00000002816) ##24	GAPDH (ENSPNYG00000002902) #25	FAM131B (ENSPNYG00000002956)	ENSPNYG00000002993	ENSPNYG00000003005	ENSPNYG00000003042	ENSPNYG00000003057	slc2a3a (ENSPNYG00000003077)	cox6b2 (ENSPNYG00000003127)	ENSPNYG00000003153	cacng6a (ENSPNYG00000003224)	cacng8a (ENSPNYG00000003234)	cacng7a (ENSPNYG00000003254)	dbpa (ENSPNYG00000003280)
Haplochromini_B	ANCESTRAL SPECIES	1				ENSGT01080000257344.a.b.b.b.b.b.a.a.a.a.b.a.a.a.a.b.b.b	ENSGT01030000234589.g.a.e.a.e.a.b.b	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.a.b.a.a.a.a.a.a.a.b.a.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.a.b	ENSGT00940000153675.a.a.a.a.a.b.a.b.a.a.a	ENSGT00940000163568	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Eastern happy	MODERN SPECIES	13	ENSACLG00000015320	ENSACLG00000015326	ENSACLG00000015334	ENSACLG00000015354	ENSACLG00000015368	ENSACLG00000015411	ENSACLG00000015419	gnb3b (ENSACLG00000015467) #9	tpi1a (ENSACLG00000015501)	eno2 (ENSACLG00000015525)	cdc42l (ENSACLG00000015587)	CDC42 (ENSACLG00000015656)	cdc42l (ENSACLG00000015681)	ENSACLG00000015700	ENSACLG00000015726	chd4a (ENSACLG00000015837) #22	vamp1a (ENSACLG00000015982)	IFFO1 (ENSACLG00000016005) ##24	GAPDH (ENSACLG00000016047) #25	FAM131B (ENSACLG00000016111)	ENSACLG00000016147	ENSACLG00000016167	ENSACLG00000016193	slc2a3a (ENSACLG00000016241)	cox6b2 (ENSACLG00000016348)	ENSACLG00000016355	ENSACLG00000016365	cacng6a (ENSACLG00000016369)	cacng8a (ENSACLG00000016387)	cacng7a (ENSACLG00000016436)	ENSACLG00000016488
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005001471	ENSMZEG00005001475	ENSMZEG00005001491	ENSMZEG00005001502	ENSMZEG00005001514	ENSMZEG00005001527	ENSMZEG00005001540	ENSMZEG00005001551	gnb3b (ENSMZEG00005001568) #9	tpi1a (ENSMZEG00005001578)	eno2 (ENSMZEG00005001608)	cdc42l (ENSMZEG00005001645)	CDC42 (ENSMZEG00005001665)	ENSMZEG00005001669	ENSMZEG00005001687	chd4a (ENSMZEG00005001706) #22	vamp1a (ENSMZEG00005002060)	IFFO1 (ENSMZEG00005002090) ##24	GAPDH (ENSMZEG00005002111) #25	FAM131B (ENSMZEG00005002153)	clcn1a (ENSMZEG00005002212)	ENSMZEG00005002252	ENSMZEG00005002269	slc2a3a (ENSMZEG00005002302)	cox6b2 (ENSMZEG00005002334)	ENSMZEG00005002348	cacng6a (ENSMZEG00005002362)	cacng8a (ENSMZEG00005002366)	cacng7a (ENSMZEG00005002392)	dbpa (ENSMZEG00005002409)	ENSMZEG00005002421
Lyretail cichlid	MODERN SPECIES	408									ENSNBRG00000001839	ENSNBRG00000001848	gnb3b (ENSNBRG00000001863) #9	tpi1a (ENSNBRG00000001907)	ENSNBRG00000002304	cdc42l (ENSNBRG00000002330)	CDC42 (ENSNBRG00000002551)	CHD4 (ENSNBRG00000002589) #22	vamp1a (ENSNBRG00000002691)	IFFO1 (ENSNBRG00000002780) ##24	GAPDH (ENSNBRG00000002965) #25	ENSNBRG00000003015	ENSNBRG00000003046	ENSNBRG00000003058	ENSNBRG00000003086	ENSNBRG00000003098	slc2a3a (ENSNBRG00000003105)	cox6b2 (ENSNBRG00000003154)	ENSNBRG00000003186	cacng6a (ENSNBRG00000003238)	cacng8a (ENSNBRG00000003244)	cacng7a (ENSNBRG00000003260)	dbpa (ENSNBRG00000003282)
Nile tilapia	MODERN SPECIES	13	ENSONIG00000039237	ENSONIG00000043166	ENSONIG00000029733	ENSONIG00000037104	ENSONIG00000031771	ENSONIG00000030117	ENSONIG00000028400	ENSONIG00000039833	gnb3b (ENSONIG00000006978) #9	tpi1a (ENSONIG00000032967)	eno2 (ENSONIG00000006984)	cdc42l (ENSONIG00000032247)	cdc42l (ENSONIG00000030755)	cdc42l (ENSONIG00000006990)	ENSONIG00000006991	chd4a (ENSONIG00000006992) #22	vamp1a (ENSONIG00000035566)	IFFO1 (ENSONIG00000029238) ##24	GAPDH (ENSONIG00000007002) #25	ENSONIG00000007005	clcn1a (ENSONIG00000007006)	ENSONIG00000036944	ENSONIG00000007017	slc2a3a (ENSONIG00000007021)	cox6b2 (ENSONIG00000040242)	ENSONIG00000007026	ENSONIG00000007028	cacng6a (ENSONIG00000007030)	cacng8a (ENSONIG00000007032)	cacng7a (ENSONIG00000012788)	ENSONIG00000007037
Midas cichlid	MODERN SPECIES	913													cdc42l (ENSACIG00000019248)	cdc42l (ENSACIG00000019258)	ENSACIG00000019286	chd4a (ENSACIG00000019310) #22	vamp1a (ENSACIG00000019603)	IFFO1 (ENSACIG00000019619) ##24	GAPDH (ENSACIG00000019642) #25
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000153770.l.b.b.a	ENSGT01100000263549.j.b.h	ENSGT00940000153770.l.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01100000263549.j.a.g.a	ENSGT01030000234589.g.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00950000183108.a.d	ENSGT01040000240796	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000178336.d	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000159762	ENSGT00940000159208.A	ENSGT00940000179034	ENSGT01100000263475.g.b.i.b.b.a.a	ENSGT01100000263475.g.b.i.b.b.a.b.a.b	ENSGT00940000160076	ENSGT00530000064569.a.c	ENSGT00530000064569.a.d	ENSGT01020000230438.B.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Anabantoidei	ANCESTRAL SPECIES	36						ENSGT01100000263475.g.b.i.b.b.a.b.a.b	ENSGT00940000160076	ENSGT00530000064569.a.c	ENSGT00530000064569.a.d	ENSGT01020000230438.B.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Siamese fighting fish	MODERN SPECIES	2	ENSBSLG00000003025	ENSBSLG00000003022	ENPP2 (ENSBSLG00000002510)	ENSBSLG00000021929	ENSBSLG00000021539	ZHX1 (ENSBSLG00000021525)	mhc1zka (ENSBSLG00000021513)	ENSBSLG00000021510	ENSBSLG00000021500	ENSBSLG00000021489	ENSBSLG00000021461	gnb3b (ENSBSLG00000021452) #9	eno2 (ENSBSLG00000021161)	ENSBSLG00000020326	ENSBSLG00000020322	chd4a (ENSBSLG00000019870) #22	vamp1a (ENSBSLG00000019802)	IFFO1 (ENSBSLG00000019761) ##24	ENSBSLG00000019590	clcn1a (ENSBSLG00000019445)	ENSBSLG00000019265	ENSBSLG00000019257	slc2a3a (ENSBSLG00000019062)	cox6b2 (ENSBSLG00000019041)	ENSBSLG00000019012	ENSBSLG00000018999	cacng6a (ENSBSLG00000018958)	cacng8a (ENSBSLG00000018950)	ENSBSLG00000018936	ENSBSLG00000018910	dbpa (ENSBSLG00000018874)
Climbing perch	MODERN SPECIES	2	ENSATEG00000027899	ENSATEG00000025334	ENSATEG00000030169	ENSATEG00000026085	ENSATEG00000016762	ENSATEG00000016706	ENSATEG00000025458	ENSATEG00000029008	ENSATEG00000030135	ENSATEG00000028381	ENSATEG00000016674	ENSATEG00000016653 #9	ENSATEG00000028558	ENSATEG00000027696	ENSATEG00000028693	ENSATEG00000016428 #22	vamp1a (ENSATEG00000016306)	ENSATEG00000027358 ##24	ENSATEG00000016228 #25	ENSATEG00000016204	clcn1a (ENSATEG00000016129)	ENSATEG00000016101	ENSATEG00000016055	slc2a3a (ENSATEG00000016028)	ENSATEG00000016013	ENSATEG00000030087	ENSATEG00000016002	cacng6a (ENSATEG00000027694)	cacng8a (ENSATEG00000029552)	cacng7a (ENSATEG00000015926)	ENSATEG00000015893
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000024851	ENSMAMG00000027346	ENSMAMG00000028410	ENSMAMG00000026025	ENSMAMG00000018792	ENSMAMG00000024962	ENSMAMG00000018800	ENSMAMG00000019835	ENSMAMG00000028302	ENSMAMG00000028119	ENSMAMG00000018842	gnb3b (ENSMAMG00000018850) #9	tpi1a (ENSMAMG00000018869)	eno2 (ENSMAMG00000018899)	ENSMAMG00000028681	chd4a (ENSMAMG00000018954) #22	vamp1a (ENSMAMG00000019095)	ENSMAMG00000019108 ##24	ENSMAMG00000028318 ##24	ENSMAMG00000019129 #25	ENSMAMG00000019156	clcn1a (ENSMAMG00000019173)	ENSMAMG00000019183	ENSMAMG00000019190	slc2a3a (ENSMAMG00000019203)	ENSMAMG00000019212	cacng6a (ENSMAMG00000019250)	cacng8a (ENSMAMG00000019257)	CACNG7 (ENSMAMG00000027363)	ENSMAMG00000019291	dbpa (ENSMAMG00000019316)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00950000183108.a.d	ENSGT01040000240796	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00530000064557.b
Carangaria_A	ANCESTRAL SPECIES	36	ENSGT00950000183108.a.d	ENSGT01040000240796	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00940000177770
Seriola	ANCESTRAL SPECIES	68	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT01040000240796	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00940000177770
Greater amberjack	MODERN SPECIES	122									ENSSDUG00000002407	ENSSDUG00000002422	ENSSDUG00000002437	gnb3b (ENSSDUG00000002466) #9	tpi1a (ENSSDUG00000002818)	eno2 (ENSSDUG00000002844)	cdc42l (ENSSDUG00000002871)	chd4a (ENSSDUG00000002891) #22	vamp1a (ENSSDUG00000002970)	IFFO1 (ENSSDUG00000002985) ##24	GAPDH (ENSSDUG00000003034) #25	FAM131B (ENSSDUG00000003068)	clcn1a (ENSSDUG00000003093)	ENSSDUG00000003169	ENSSDUG00000003193	slc2a3a (ENSSDUG00000003222)	ENSSDUG00000003246	ENSSDUG00000003254	cacng6a (ENSSDUG00000003265)	cacng8a (ENSSDUG00000003279)	cacng7a (ENSSDUG00000003295)	ENSSDUG00000003334	dbpa (ENSSDUG00000003384)
Yellowtail amberjack	MODERN SPECIES	3022	pomca (ENSSLDG00000019378)	ENSSLDG00000019372	ENSSLDG00000019302	ENSSLDG00000019281	ENSSLDG00000019273	ENSSLDG00000019267	ENSSLDG00000019256	ENSSLDG00000019245	ENSSLDG00000019230	ENSSLDG00000019209	ENSSLDG00000019194	gnb3b (ENSSLDG00000019165) #9	tpi1a (ENSSLDG00000019151)	eno2 (ENSSLDG00000019118)	cdc42l (ENSSLDG00000019093)	chd4a (ENSSLDG00000018645) #22	vamp1a (ENSSLDG00000018555)
Barramundi perch	MODERN SPECIES	251	ENSLCAG00010024290	ENSLCAG00010024289	ENSLCAG00010024285	ENSLCAG00010024284	ENSLCAG00010024283	ENSLCAG00010024280	ENSLCAG00010024278	ENSLCAG00010024270	ENSLCAG00010024265	ENSLCAG00010024262	ENSLCAG00010024258	gnb3b (ENSLCAG00010024253) #9	tpi1a (ENSLCAG00010024245)	eno2 (ENSLCAG00010024191)	cdc42l (ENSLCAG00010024164)	chd4a (ENSLCAG00010024042) #22	vamp1a (ENSLCAG00010023997)
Pleuronectoidei	ANCESTRAL SPECIES	49	ENSGT00940000156034.b	ENSGT00940000155167.b.a.b	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00530000064557.b
Turbot	MODERN SPECIES	14	si:dkey-211g8.1 (ENSSMAG00000013088)	ENSSMAG00000013026	ENSSMAG00000012978	ENSSMAG00000012964	ENSSMAG00000012943	necap1 (ENSSMAG00000012932)	epn1b (ENSSMAG00000012897)	ENSSMAG00000012924	si:ch211-232m10.6 (ENSSMAG00000012886)	rcvrn3 (ENSSMAG00000012870)	tmem238a (ENSSMAG00000037750)	ENSSMAG00000034226	ENSSMAG00000034530	ENSSMAG00000032328	ENSSMAG00000036069	ENSSMAG00000012594 #22	vamp1a (ENSSMAG00000012567)	ENSSMAG00000012550 ##24	ENSSMAG00000012513 #25	ENSSMAG00000012482	clcn1a (ENSSMAG00000012360)	ENSSMAG00000012329	ENSSMAG00000012309	slc2a3a (ENSSMAG00000012273)	ENSSMAG00000012266	cacng6a (ENSSMAG00000012253)	cacng8a (ENSSMAG00000012239)	cacng7a (ENSSMAG00000012206)	ENSSMAG00000035892	dbpa (ENSSMAG00000015990)	ENSSMAG00000023995
Tongue sole	MODERN SPECIES	9	ENSCSEG00000018117	ENSCSEG00000018107	ENSCSEG00000018103	ENSCSEG00000018089	SCGN (ENSCSEG00000018050)	ENSCSEG00000018039	tmem65 (ENSCSEG00000018026)	rnf139 (ENSCSEG00000018013)	tatdn1 (ENSCSEG00000017999)	ndufb9 (ENSCSEG00000017961)	ENSCSEG00000017944	ENSCSEG00000017935	gnb3b (ENSCSEG00000017922) #9	eno2 (ENSCSEG00000017914)	cdc42l (ENSCSEG00000017278)	chd4a (ENSCSEG00000017173) #22	ENSCSEG00000017166 ##24	slc2a3a (ENSCSEG00000017154)	ENSCSEG00000017148	ENSCSEG00000017141	ENSCSEG00000017133	ENSCSEG00000017129	FAM131B (ENSCSEG00000017112)	ENSCSEG00000017109	si:ch211-232m10.6 (ENSCSEG00000017102)	rcvrn3 (ENSCSEG00000017098)	tmem238a (ENSCSEG00000017094)	ccdc106b (ENSCSEG00000017086)	cnot3b (ENSCSEG00000016892)	ENSCSEG00000016863	dbpa (ENSCSEG00000016853)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00390000016811.g.g.b	ENSGT00940000153770.l.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01100000263549.j.b.h	ENSGT01100000263549.j.a.h	ENSGT00940000153770.l.b.b.b	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Tetraodontidae	ANCESTRAL SPECIES	188													ENSGT00390000005809	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00940000157871.h.b	ENSGT00940000165997.a
Fugu	MODERN SPECIES	3													ndufb9 (ENSTRUG00000026801)	gnb3b (ENSTRUG00000000211) #9	eno2 (ENSTRUG00000000195)	chd4a (ENSTRUG00000027499) #22	vamp1a (ENSTRUG00000006307)	ENSTRUG00000032112	ENSTRUG00000002814	ENSTRUG00000002721	ENSTRUG00000025815	pvrl2l (ENSTRUG00000020468)	ENSTRUG00000030907	ENSTRUG00000027420	ENSTRUG00000030748	ATP1A3 (ENSTRUG00000002904)	ENSTRUG00000003777	erf (ENSTRUG00000004604)	ENSTRUG00000024028	gsk3aa (ENSTRUG00000004889)	zgc:91910 (ENSTRUG00000029186)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001595	neu1 (ENSTNIG00000004137)	ENSTNIG00000001251	ENSTNIG00000004128	ENSTNIG00000001551	ENSTNIG00000001627	nlk2 (ENSTNIG00000004124)	ENSTNIG00000004116	ENSTNIG00000004115	poli (ENSTNIG00000004113)	RAB27B (ENSTNIG00000004112)	ST8SIA3 (ENSTNIG00000004111)	CCNG2 (ENSTNIG00000004110)	ENSTNIG00000000212	gnb3b (ENSTNIG00000004096) #9	CHD4 (ENSTNIG00000004095) #22	ENSTNIG00000004089	polr3e (ENSTNIG00000004088)	eef2k (ENSTNIG00000004087)	ENSTNIG00000004086	PAIP2B (ENSTNIG00000000989)	ENSTNIG00000004085	slc16a10 (ENSTNIG00000004084)	ENSTNIG00000004083	TMEM121B (ENSTNIG00000004082)	ENSTNIG00000004081	dnajc28 (ENSTNIG00000004080)	ENSTNIG00000000020	lsr (ENSTNIG00000004079)	ENSTNIG00000001693	ENSTNIG00000004075
Tetraodon	MODERN SPECIES	10	chrnb3a (ENSTNIG00000012037)	ENSTNIG00000012036	ENSTNIG00000000266	PLPPR2 (ENSTNIG00000002644)	elof1 (ENSTNIG00000006072)	pld6 (ENSTNIG00000006073)	ENSTNIG00000006074	tspan34 (ENSTNIG00000000549)	dand5 (ENSTNIG00000006075)	NFIX (ENSTNIG00000003955)	ENSTNIG00000004024	rnf11a (ENSTNIG00000006136)	HMOX1 (ENSTNIG00000006135)	ENSTNIG00000006134	ENSTNIG00000006133	ENSTNIG00000006132 #22	s1pr5b (ENSTNIG00000004542)	keap1b (ENSTNIG00000004541)	ENSTNIG00000004540	CDKN2D (ENSTNIG00000004539)	ap1m2 (ENSTNIG00000004538)	ENSTNIG00000004537	SMARCA4 (ENSTNIG00000004536)	atg4da (ENSTNIG00000004535)	MAST1 (ENSTNIG00000004534)	rnaseh2a (ENSTNIG00000004533)	ENSTNIG00000004532	KCNJ4 (ENSTNIG00000004531)	ENSTNIG00000004530	zgc:158803 (ENSTNIG00000005519)	ENSTNIG00000001651
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT01100000263549.j.a.h	ENSGT00940000153770.l.b.b.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.a	ENSGT01030000234589.g.a.i.b	ENSGT01080000257344.a.b.b.a.a.b.a.b	ENSGT01080000257344.a.b.b.b.a.a.b	ENSGT01100000263549.j.b.g.b	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a.j	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Eupecaria_B	DUPLICATION
Eupecaria_B	DUPLICATION
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.i.a #22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.i.a #22
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.i.a #22
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001284	ENSCLMG00005001290	ENSCLMG00005001299	GAPDH (ENSCLMG00005001335) #25	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.i.a #22
Channel bull blenny	MODERN SPECIES	7	mdc1 (ENSCGOG00000004843)	ENSCGOG00000004817	flot1b (ENSCGOG00000004148)	DDR1 (ENSCGOG00000003979)	gnl1 (ENSCGOG00000003618)	znf384b (ENSCGOG00000003604) #18	si:ch211-154o6.3 (ENSCGOG00000003601)	cops7a (ENSCGOG00000003594) #16	cldc1 (ENSCGOG00000003591)	ENSCGOG00000003586 #12	ENSCGOG00000003584	usp5 (ENSCGOG00000002951) #7	mlf2 (ENSCGOG00000002917) #15	wnt4b (ENSCGOG00000002888)	CHD4 (ENSCGOG00000002674) #22	ENSCGOG00000002613 #22	ENO2 (ENSCGOG00000002611)	ENO2 (ENSCGOG00000002584)	mlf2 (ENSCGOG00000002581) #15	cdc42l (ENSCGOG00000002487)	wnt4b (ENSCGOG00000002447)	CHD4 (ENSCGOG00000002438) #22	ENSCGOG00000002434	ptpn6 (ENSCGOG00000001844)	rbp5 (ENSCGOG00000001814)	ENSCGOG00000001810	ENSCGOG00000001804	ENSCGOG00000001801	gapdh (ENSCGOG00000001626) #25	nppcl (ENSCGOG00000008532)	ncapd2 (ENSCGOG00000008211) #26
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.h.a	ENSGT01030000234589.g.a.i.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.g	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01100000263549.j.b.h	ENSGT01100000263549.j.a.h	ENSGT00940000153770.l.b.b.b	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a.j	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000153770.l.b.a.a	ENSGT01100000263549.j.a.h	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.h.a	ENSGT01030000234589.g.a.i.a.a	ENSGT01080000257344.a.b.b.b.b.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT01100000263549.j.b.h	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a.j	ENSGT00940000154869.b.d	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00990000209266	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Perciformes_a	ANCESTRAL SPECIES	14			ENSGT01080000257344.a.b.b.b.b.b.b.a.a.g	ENSGT00940000153770.l.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.h.a	ENSGT01030000234589.g.a.i.a.a	ENSGT01100000263549.j.a.h	ENSGT00940000153770.l.a	ENSGT01030000234589.g.a.j	ENSGT01100000263549.j.b.h	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00990000209266	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Pike perch	MODERN SPECIES	121	ENSSLUG00000020505	ENSSLUG00000020502	ENSSLUG00000020497	ENSSLUG00000020492	ENSSLUG00000020490	ENSSLUG00000020487	ENSSLUG00000020483	ENSSLUG00000020481	ENSSLUG00000020477	ENSSLUG00000020472	ENSSLUG00000020465	gnb3b (ENSSLUG00000020458) #9	tpi1a (ENSSLUG00000020450)	eno2 (ENSSLUG00000020328)	cdc42l (ENSSLUG00000020288)	chd4a (ENSSLUG00000009671) #22	vamp1a (ENSSLUG00000009331)	IFFO1 (ENSSLUG00000009291) ##24	ENSSLUG00000009276	GAPDH (ENSSLUG00000007149) #25	ENSSLUG00000007009	clcn1a (ENSSLUG00000006558)	ENSSLUG00000006529	ENSSLUG00000006471	slc2a3a (ENSSLUG00000006458)	cox6b2 (ENSSLUG00000006447)	ENSSLUG00000006402	cacng6a (ENSSLUG00000006394)	cacng8a (ENSSLUG00000006378)	cacng7a (ENSSLUG00000006368)	ENSSLUG00000006358
Channel bull blenny	MODERN SPECIES	2	ENSCGOG00000009965	ENSCGOG00000009966	ENSCGOG00000009970	ENSCGOG00000009972	ENSCGOG00000009973	ENSCGOG00000009980	ENSCGOG00000010036	ENSCGOG00000010132	ENSCGOG00000010136	ENSCGOG00000010138	ENSCGOG00000010142	gnb3b (ENSCGOG00000010143) #9	tpi1a (ENSCGOG00000010145)	eno2 (ENSCGOG00000010214)	cdc42l (ENSCGOG00000011074)	chd4a (ENSCGOG00000011371) #22	ENSCGOG00000017800	vamp1a (ENSCGOG00000017801)	IFFO1 (ENSCGOG00000017803) ##24	GAPDH (ENSCGOG00000004346) #25	ENSCGOG00000008185	clcn1a (ENSCGOG00000008215)	ENSCGOG00000009473	ENSCGOG00000009475	ENSCGOG00000009476	slc2a3a (ENSCGOG00000009540)	cox6b2 (ENSCGOG00000010819)	ENSCGOG00000010836	cacng6a (ENSCGOG00000010839)	cacng8a (ENSCGOG00000010843)	cacng7a (ENSCGOG00000010846)
Cottioidei	ANCESTRAL SPECIES	26	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234589.g.a.i.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.g	ENSGT00940000153770.l.b.a.a	ENSGT01100000263549.j.a.h	ENSGT01030000234589.g.a.j	ENSGT00940000154869.b.d	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.a.a	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00510000046803.b.a.b ##24	ENSGT00990000209266	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b	ENSGT00940000165399.a.a	ENSGT00390000014743.i
Lumpfish	DUPLICATION
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765	ENSCLMG00005003048	ENSCLMG00005003445	pomca (ENSCLMG00005003485)	ndufb9 (ENSCLMG00005003486)
Lumpfish	MODERN SPECIES	2	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765	ENSCLMG00005003048	ENSCLMG00005003445	pomca (ENSCLMG00005003485)	ndufb9 (ENSCLMG00005003486)	tatdn1 (ENSCLMG00005003487)	rnf139 (ENSCLMG00005003601)
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001299	GAPDH (ENSCLMG00005001335) #25	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765	ENSCLMG00005003048	ENSCLMG00005003445
Lumpfish	MODERN SPECIES	2	cacng8a (ENSCLMG00005013528)	cacng6a (ENSCLMG00005013529)	ENSCLMG00005013532	slc2a3a (ENSCLMG00005013533)	ENSCLMG00005013534	ENSCLMG00005001284	ENSCLMG00005001290	ENSCLMG00005001299	GAPDH (ENSCLMG00005001335) #25	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9
Stickleback	MODERN SPECIES	224													ENSGACG00000018698	ENSGACG00000018699	cdc42l (ENSGACG00000018701)	chd4a (ENSGACG00000018705) #22	IFFO1 (ENSGACG00000018722) ##24	GAPDH (ENSGACG00000018725) #25
Eupecaria_C	ANCESTRAL SPECIES	35	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT01040000240796	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	38	ENSGT00940000156034.b	ENSGT00940000155167.b.a.b	ENSGT00940000155112.B.b	ENSGT00950000183108.a.d	ENSGT00950000183156.a.b.b.b.b.a.c.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00940000164041.b.b	ENSGT00390000016811.g.g.b	ENSGT01030000234575.c.a.a.b	ENSGT01000000214413.b.a.b.a.b #9	ENSGT00390000013354.b.b	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00940000153675.a.a.a.a.a.b.b	ENSGT00940000155088.b.a.a.i.b #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00940000153298.i.b #25	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000165997.a	ENSGT00940000160313	ENSGT00940000164148.a.a.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.b	ENSGT01060000248591.b.a	ENSGT00390000007786.b.h	ENSGT01050000244893.c.b.a.g.b	ENSGT01050000244961.b.h	ENSGT00940000159109.b
European seabass	MODERN SPECIES	22	ENSDLAG00005029832	ENSDLAG00005033618	ENSDLAG00005029306	ENSDLAG00005034304	ENSDLAG00005002971	ENSDLAG00005034375	ENSDLAG00005032896	ENSDLAG00005031326	ENSDLAG00005018280	ENSDLAG00005022595	ENSDLAG00005022591	gnb3b (ENSDLAG00005022583) #9	tpi1a (ENSDLAG00005022577)	eno2 (ENSDLAG00005022376)	ENSDLAG00005022362	chd4a (ENSDLAG00005012933) #22	vamp1a (ENSDLAG00005034920)	ENSDLAG00005027051 ##24	ENSDLAG00005011957 #25	ENSDLAG00005011919	ENSDLAG00005011895	clcn1a (ENSDLAG00005009206)	ENSDLAG00005009133	ENSDLAG00005009087	slc2a3a (ENSDLAG00005008911)	ENSDLAG00005031917	ENSDLAG00005008884	ENSDLAG00005008880	cacng6a (ENSDLAG00005008871)	cacng8a (ENSDLAG00005008862)	cacng7a (ENSDLAG00005008844)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005019576	msto1 (ENSLCRG00005019613)	srsf4 (ENSLCRG00005019641)	ENSLCRG00005019645	xkr8.3 (ENSLCRG00005019647)	ENSLCRG00005019648	eya3 (ENSLCRG00005019698)	si:ch211-195b13.1 (ENSLCRG00005019965)	myo1g (ENSLCRG00005020898)	si:dkeyp-92c9.2 (ENSLCRG00005021052)	ENSLCRG00005021055	gnb3b (ENSLCRG00005021061) #9	tpi1a (ENSLCRG00005021080)	eno2 (ENSLCRG00005021112)	cdc42l (ENSLCRG00005021221)	chd4a (ENSLCRG00005022145) #22	vamp1a (ENSLCRG00005023871)	IFFO1 (ENSLCRG00005023872) ##24	ENSLCRG00005023873	GAPDH (ENSLCRG00005023875) #25	clcn1a (ENSLCRG00005023892)	ENSLCRG00005023899	ENSLCRG00005023900	slc2a3a (ENSLCRG00005023901)	cox6b2 (ENSLCRG00005023904)	ENSLCRG00005023905	ENSLCRG00005023906	cacng6a (ENSLCRG00005023907)	cacng8a (ENSLCRG00005023908)	cacng7a (ENSLCRG00005023909)	ENSLCRG00005023910
Gilthead seabream	MODERN SPECIES	17	ENSSAUG00010000199	ENSSAUG00010000205	IGKV4-1 (ENSSAUG00010000242)	ENSSAUG00010000246	ENSSAUG00010000250	IGKV4-1 (ENSSAUG00010000257)	ENSSAUG00010000262	ENSSAUG00010000265	ENSSAUG00010000268	ENSSAUG00010000275	ENSSAUG00010000278	gnb3b (ENSSAUG00010000285) #9	tpi1a (ENSSAUG00010000295)	eno2 (ENSSAUG00010000343)	cdc42l (ENSSAUG00010000398)	chd4a (ENSSAUG00010000813) #22	vamp1a (ENSSAUG00010016855)	IFFO1 (ENSSAUG00010016868) ##24	ENSSAUG00010016876	vamp1a (ENSSAUG00010016878)	ENSSAUG00010016885	ENSSAUG00010016890	ENSSAUG00010016892	GAPDH (ENSSAUG00010016909) #25	ENSSAUG00010018808	ENSSAUG00010018810	FAM131B (ENSSAUG00010018814)	GAPDH (ENSSAUG00010018830) #25	clcn1a (ENSSAUG00010018904)	ENSSAUG00010020160	ENSSAUG00010020163
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.j #22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.j #22
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.a.j #22
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	2	GAPDH (ENSCLMG00005001335) #25	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765	ENSCLMG00005003048	ENSCLMG00005003445	pomca (ENSCLMG00005003485)
Lumpfish	MODERN SPECIES	2	ENSCLMG00005001290	ENSCLMG00005001299	GAPDH (ENSCLMG00005001335) #25	ENSCLMG00005001376	IFFO1 (ENSCLMG00005001417) ##24	vamp1a (ENSCLMG00005001494)	ENSCLMG00005001720	ENSCLMG00005001724	ENSCLMG00005001726	chd4a (ENSCLMG00005001787) #22	ENSCLMG00005002249	ENSCLMG00005002252	ENSCLMG00005002264	ENSCLMG00005002285	ENSCLMG00005002286 #22	ENSCLMG00005002288 #22	ENSCLMG00005002291 #22	ENSCLMG00005002293 #22	ENSCLMG00005002294 #22	ENSCLMG00005002295	ENSCLMG00005002298 #22	ENSCLMG00005002300	eno2 (ENSCLMG00005002303)	tpi1a (ENSCLMG00005002455)	gnb3b (ENSCLMG00005002459) #9	ENSCLMG00005002460	ENSCLMG00005002462	ENSCLMG00005002560	ENSCLMG00005002590	ENSCLMG00005002765	ENSCLMG00005003048
Osteoglossiformes	ANCESTRAL SPECIES	471																ENSGT00940000155088.b.a.a #22	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b ##24	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000160313.e
P. kingsleyae	MODERN SPECIES	72	pip5k1ab (ENSPKIG00000012861)	ENSPKIG00000012820	ENSPKIG00000012805	ENSPKIG00000012788	ENSPKIG00000012770	ENSPKIG00000012719	GRIK5 (ENSPKIG00000012638)	ENSPKIG00000012582	erf (ENSPKIG00000012566)	ENSPKIG00000012493	ENSPKIG00000012460	ENSPKIG00000012424	FLOT1 (ENSPKIG00000012343)	znf384a (ENSPKIG00000012153) #18	gnb3b (ENSPKIG00000012108) #9	CHD4 (ENSPKIG00000012023) #22	vamp1a (ENSPKIG00000011993)	IFFO1 (ENSPKIG00000011950) ##24	ENSPKIG00000011932	ENSPKIG00000011895	clcn1a (ENSPKIG00000011841)	slc2a3a (ENSPKIG00000011791)	ENSPKIG00000011770	tomm40 (ENSPKIG00000011723)	ENSPKIG00000011641	foxo6b (ENSPKIG00000011612)	ppp1r8a (ENSPKIG00000011577)	ENSPKIG00000011552	ENSPKIG00000011536	ENSPKIG00000011522	ENSPKIG00000011509
Osteoglossocephalai	ANCESTRAL SPECIES	4	ENSGT00390000001745.a #12	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT01050000245031	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Clupeocephala	ANCESTRAL SPECIES		ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT01050000245031	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Otomorpha	ANCESTRAL SPECIES	244	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b
Clupeiformes	ANCESTRAL SPECIES		ENSGT00940000160074	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000157473.b.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000012976	ENSGT00940000165838	ENSGT00940000158808	ENSGT01030000234586.B.a.b	ENSGT00940000159286.a.b.d	ENSGT00510000047412.a
Denticle herring	MODERN SPECIES	15	CYTH2 (ENSDCDG00000000861)	SPHK2 (ENSDCDG00000001007)	cnot3a (ENSDCDG00000001051)	prpf31 (ENSDCDG00000001087)	ENSDCDG00000001098	leng1 (ENSDCDG00000001104)	ENSDCDG00000001116	mboat7 (ENSDCDG00000001121)	rps9 (ENSDCDG00000001127)	rbfox1l (ENSDCDG00000001133)	ENSDCDG00000001139	ENO2 (ENSDCDG00000001162)	mlf2 (ENSDCDG00000001234) #15	cdc42l (ENSDCDG00000001244)	wnt4b (ENSDCDG00000001254)	CHD4 (ENSDCDG00000001313) #22	ptpn6 (ENSDCDG00000001550)	ENSDCDG00000002073	rbp5 (ENSDCDG00000002078)	ENSDCDG00000002093	c1s.2 (ENSDCDG00000002101)	c1r (ENSDCDG00000002111)	ENSDCDG00000002161	ENSDCDG00000002194	ENSDCDG00000002196	c1s.2 (ENSDCDG00000002200)	ENSDCDG00000002204	ENSDCDG00000002208 #29	ENSDCDG00000002211	rpl18 (ENSDCDG00000002215)	si:ch211-120k19.1 (ENSDCDG00000002219)
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000012513	cnot3a (ENSCHAG00000012532)	prpf31 (ENSCHAG00000012582)	ENSCHAG00000013189	leng1 (ENSCHAG00000013196)	ENSCHAG00000013225	mboat7 (ENSCHAG00000013239)	rps9 (ENSCHAG00000013264)	rbfox1l (ENSCHAG00000013284)	ENSCHAG00000013304	ENSCHAG00000013328	ENO2 (ENSCHAG00000013340)	mlf2 (ENSCHAG00000013580) #15	cdc42l (ENSCHAG00000013642)	wnt4b (ENSCHAG00000013686)	ENSCHAG00000013844 #22	ptpn6 (ENSCHAG00000021612)	rbp5 (ENSCHAG00000021827)	ENSCHAG00000021901	c1r (ENSCHAG00000022107)	ENSCHAG00000022136	ENSCHAG00000022141	ENSCHAG00000022168	ENSCHAG00000022173	ENSCHAG00000022184	ENSCHAG00000022197	ENSCHAG00000022219	ENSCHAG00000022242 #29	ENSCHAG00000022271 #29	ENSCHAG00000022290	rpl18 (ENSCHAG00000022298)
Otophysi	ANCESTRAL SPECIES	58	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00940000166290	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000157473.b.b
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00940000166290	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a	ENSGT00690000103873	ENSGT00940000157062	ENSGT00940000160806	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	105	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00940000166290	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000155088.b.a.b.a #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a	ENSGT00690000103873	ENSGT00940000157062	ENSGT00940000160806	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a
Characoidei	ANCESTRAL SPECIES	144	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00940000166290	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b.a #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.l.a
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000029962	ENSAMXG00000037914	ENSAMXG00000017050	ENSAMXG00000029690	mboat7 (ENSAMXG00000035532)	ENSAMXG00000041315	ENSAMXG00000010025	styk1b (ENSAMXG00000010082)	phc1 (ENSAMXG00000010182)	rps9 (ENSAMXG00000010402)	rbfox1l (ENSAMXG00000010470)	ENSAMXG00000010530	mlf2 (ENSAMXG00000010550) #15	ENSAMXG00000039450	wnt4b (ENSAMXG00000010599)	CHD4 (ENSAMXG00000010614) #22	ptpn6 (ENSAMXG00000010631)	rbp5 (ENSAMXG00000043868)	ENSAMXG00000010657	c1s.2 (ENSAMXG00000031584)	c1s.2 (ENSAMXG00000032678)	ENSAMXG00000040474	ENSAMXG00000036109	ENSAMXG00000010677	ENSAMXG00000010798	ENSAMXG00000036050	SLC39A1 (ENSAMXG00000011024)	CREB3L4 (ENSAMXG00000038728)	ENSAMXG00000038343	clk2b (ENSAMXG00000011147)	ENSAMXG00000037484
Red-bellied piranha	MODERN SPECIES	573					ENSPNAG00000001765	styk1b (ENSPNAG00000011350)	phc1 (ENSPNAG00000001672)	ENSPNAG00000011261	rps9 (ENSPNAG00000011249)	rbfox1l (ENSPNAG00000001620)	ENSPNAG00000011212	ENSPNAG00000011195	mlf2 (ENSPNAG00000001588) #15	cdc42l (ENSPNAG00000001579)	wnt4b (ENSPNAG00000011153)	CHD4 (ENSPNAG00000011129) #22	ptpn6 (ENSPNAG00000010907)	rbp5 (ENSPNAG00000010839)	ENSPNAG00000010824	ENSPNAG00000010813	ENSPNAG00000010807
Electric eel	MODERN SPECIES	93	ENSEEEG00000007640	ENSEEEG00000007639	lancl2 (ENSEEEG00000007637)	tuft1a (ENSEEEG00000007636)	zgc:123238 (ENSEEEG00000007634)	ENSEEEG00000007632	aqp10a (ENSEEEG00000007606)	ENSEEEG00000007603	ENSEEEG00000007602	rps9 (ENSEEEG00000007597)	ENSEEEG00000007596	rbfox1l (ENSEEEG00000007594)	mlf2 (ENSEEEG00000007593) #15	ENSEEEG00000007445	wnt4b (ENSEEEG00000007433)	CHD4 (ENSEEEG00000005643) #22	ptpn6 (ENSEEEG00000005368)	rbp5 (ENSEEEG00000005359)	ENSEEEG00000005358	c1s.1 (ENSEEEG00000005356)	c1r (ENSEEEG00000005353)	ENSEEEG00000005350	SLC39A1 (ENSEEEG00000005349)	ENSEEEG00000005333	clk2b (ENSEEEG00000005319)	cyp11c1 (ENSEEEG00000004639)	ENSEEEG00000004603	zbtb7b (ENSEEEG00000004599)	khdc4 (ENSEEEG00000004598)	malsu1 (ENSEEEG00000004597)	ENSEEEG00000004596
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.b.b #22
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.b.b #22
Red-bellied piranha	MODERN SPECIES	1574																ENSPNAG00000012757 #22	ENSPNAG00000002373
Channel catfish	MODERN SPECIES		CARMIL1 (ENSIPUG00000000071)	ENSIPUG00000000070	TNFRSF11B (ENSIPUG00000000069)	si:ch211-93i7.4 (ENSIPUG00000000068)	MAL2 (ENSIPUG00000000067)	CCN3 (ENSIPUG00000000066)	rbfox1l (ENSIPUG00000000065)	ENSIPUG00000000064	ENSIPUG00000000063	ENSIPUG00000000062	rps9 (ENSIPUG00000000061)	phc1 (ENSIPUG00000000060)	wnt4b (ENSIPUG00000000059)	ENSIPUG00000000057	ENSIPUG00000000056 #22	ENSIPUG00000000055 #22	PTPN6 (ENSIPUG00000000054)	rbp5 (ENSIPUG00000000053)	C1R (ENSIPUG00000000052)	ENSIPUG00000000051	ENSIPUG00000000050	CREB3L4 (ENSIPUG00000000049)	fbxo43 (ENSIPUG00000000048)	spag1b (ENSIPUG00000000047)	malsu1 (ENSIPUG00000000046)	clk2b (ENSIPUG00000000045)	ENSIPUG00000000044	cyp11c1 (ENSIPUG00000000043)	pklr (ENSIPUG00000000042)	ENSIPUG00000000041	khdc4 (ENSIPUG00000000039)
Cyprinoidei	ANCESTRAL SPECIES	60	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697.bb.a	ENSGT00440000033697.bb.b.a	ENSGT00440000033697.bb.b.b	ENSGT00940000157871.h.a	ENSGT00940000165997.b	ENSGT00940000166290	ENSGT00550000074829	ENSGT00940000166165	ENSGT00940000153615.b	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886
Cyprininae	ANCESTRAL SPECIES	28	ENSGT01030000234564.a.b.m	ENSGT00440000033697.bb.a.b	ENSGT00440000033697.bb.b.a	ENSGT00440000033697.bb.b.b	ENSGT00940000157871.h.a.a	ENSGT00940000165997.b.a	ENSGT00940000166290	ENSGT00550000074829.gc.b	ENSGT00550000074829.gc.a	ENSGT00940000166165.d	ENSGT00940000153615.b.d	ENSGT00390000005023.a.t #15	ENSGT00940000153675.a.a.a.a.b.b.a	ENSGT00940000166118.j	ENSGT00940000159249.a.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480.b	ENSGT00940000165886.l	ENSGT00950000183084.b.a.a.b.e.a.a	ENSGT00950000183084.b.a.a.a.j	ENSGT00940000155783.j.a	ENSGT00690000103873.b	ENSGT00940000156215.r	ENSGT00940000159300.f	ENSGT00940000159104.d.a	ENSGT00940000158587.c.a.c	ENSGT00940000159581.b.a.f.a.a	ENSGT00390000004215.a.b.b.c.b.d.l	ENSGT00940000161897.a.b	ENSGT00940000156930.ab	ENSGT00940000154491.c.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT00510000048131.t	ENSGT00940000154244.B.e	ENSGT01050000244894.a.a.a.a.d	ENSGT01030000234564.a.b.m	ENSGT00440000033697.bb.a.b	ENSGT00440000033697.bb.b.a	ENSGT00940000157871.h.a.a	ENSGT00940000165997.b.a	ENSGT00550000074829.gc.a	ENSGT00940000166165.d	ENSGT00940000153615.b.d	ENSGT00390000005023.a.t #15	ENSGT00940000153675.a.a.a.a.b.b.a	ENSGT00940000166118.j	ENSGT00940000159249.a.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480.b	ENSGT00940000165886.l	ENSGT00950000183084.b.a.a.b.e.a.a	ENSGT00940000156212.n.b	ENSGT00950000183084.b.a.a.b.e.a.b	ENSGT00950000183084.b.a.a.b.f	ENSGT00940000157473.b.a	ENSGT00940000155783.j.b	ENSGT00690000103873.a	ENSGT00940000156215.q	ENSGT00940000177637	ENSGT00940000159300.e	ENSGT00940000159104.d.b	ENSGT00940000158587.c.a.d	ENSGT00950000182872.f.a.b.o.c
Golden-line barbel	MODERN SPECIES	95	prpf31 (ENSSGRG00000042503)	ENSSGRG00000042803	leng1 (ENSSGRG00000042804)	mboat7 (ENSSGRG00000042805)	ENSSGRG00000000101	ENSSGRG00000000175	gstk4 (ENSSGRG00000000215)	styk1b (ENSSGRG00000000342)	phc1 (ENSSGRG00000000366)	rps9 (ENSSGRG00000000404)	rbfox1l (ENSSGRG00000000454)	ENSSGRG00000000462	mlf2 (ENSSGRG00000000463) #15	wnt4b (ENSSGRG00000000465)	ENSSGRG00000000474	ENSSGRG00000000476 #22	ptpn6 (ENSSGRG00000000479)	ENSSGRG00000000495	ENSSGRG00000000498	ENSSGRG00000000502	ENSSGRG00000000506	ENSSGRG00000000509	c1s.2 (ENSSGRG00000000519)	ENSSGRG00000000578	ENSSGRG00000000592	PHF20L1 (ENSSGRG00000000595)	ENSSGRG00000000605	ENSSGRG00000000607	SLA (ENSSGRG00000000611)	ccn4b (ENSSGRG00000000649)	ndrg1b (ENSSGRG00000000652)
Euteleosteomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01030000234576.D.a.b.a.a.b	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT01050000245031	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000157473.b.a	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00940000157473.b.a	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Climbing perch	MODERN SPECIES	7	ENSATEG00000020780	usp5 (ENSATEG00000020839) #7	P3H3 (ENSATEG00000020881) #10	gnb3a (ENSATEG00000020921) #9	cdca3 (ENSATEG00000020942) #8	pex5 (ENSATEG00000020954)	ENSATEG00000020993	lpcat3 (ENSATEG00000021022)	tpi1b (ENSATEG00000021044)	ENSATEG00000021056	ENSATEG00000021065	ENSATEG00000021080	mlf2 (ENSATEG00000021098) #15	cdc42l (ENSATEG00000021106)	wnt4b (ENSATEG00000021124)	ENSATEG00000021141 #22	ptpn6 (ENSATEG00000021186)	rbp5 (ENSATEG00000021284)	ENSATEG00000027269	ENSATEG00000021298	c1s.2 (ENSATEG00000021318)	ENSATEG00000021386	ENSATEG00000021426	ENSATEG00000021453	ENSATEG00000021461 #29	ENSATEG00000021472 #27	ENSATEG00000021485	ENSATEG00000021502 #34	tnfrsf1a (ENSATEG00000021520) #33	ENSATEG00000021534 ##24	gapdh (ENSATEG00000021562) #25
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000011756	usp5 (ENSBSLG00000011963) #7	P3H3 (ENSBSLG00000012527) #10	gnb3a (ENSBSLG00000012548) #9	cdca3 (ENSBSLG00000012554) #8	pex5 (ENSBSLG00000012592)	CLSTN3 (ENSBSLG00000013359)	lpcat3 (ENSBSLG00000014007)	tpi1b (ENSBSLG00000014028)	ENSBSLG00000014156	ENSBSLG00000014172	ENO2 (ENSBSLG00000014219)	mlf2 (ENSBSLG00000014457) #15	cdc42l (ENSBSLG00000014473)	wnt4b (ENSBSLG00000014501)	CHD4 (ENSBSLG00000014755) #22	ptpn6 (ENSBSLG00000020434)	rbp5 (ENSBSLG00000020986)	ENSBSLG00000021088	ENSBSLG00000021142	c1r (ENSBSLG00000021166)	ENSBSLG00000021256 #29	vamp1b (ENSBSLG00000021283)	mrpl51 (ENSBSLG00000021301) #27	ENSBSLG00000021313	ENSBSLG00000021365 #34	tnfrsf1a (ENSBSLG00000021384) #33	IFFO1 (ENSBSLG00000021449) ##24	gapdh (ENSBSLG00000021486) #25	nppcl (ENSBSLG00000021693)	ENSBSLG00000021788 #26
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000003438	usp5 (ENSMAMG00000003385) #7	P3H3 (ENSMAMG00000003306) #10	gnb3a (ENSMAMG00000003267) #9	cdca3 (ENSMAMG00000003257) #8	pex5 (ENSMAMG00000003113)	ENSMAMG00000003054	lpcat3 (ENSMAMG00000002993)	tpi1b (ENSMAMG00000027825)	ENSMAMG00000025691	ENSMAMG00000002878	ENSMAMG00000002818	mlf2 (ENSMAMG00000002770) #15	cdc42l (ENSMAMG00000002744)	wnt4b (ENSMAMG00000002724)	ENSMAMG00000002584 #22	ptpn6 (ENSMAMG00000002533)	rbp5 (ENSMAMG00000002514)	ENSMAMG00000002491	ENSMAMG00000002472	c1r (ENSMAMG00000002356)	ENSMAMG00000002334 #29	ENSMAMG00000002303	MRPL51 (ENSMAMG00000002286) #27	ENSMAMG00000002274	ENSMAMG00000002253 #34	ENSMAMG00000002202 #33	ENSMAMG00000028123 ##24	ENSMAMG00000026561	ENSMAMG00000001947 #26	ENSMAMG00000001932 #19
Carangaria	ANCESTRAL SPECIES	1	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Seriola	ANCESTRAL SPECIES	28	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Greater amberjack	MODERN SPECIES	88	ENSSDUG00000013468	usp5 (ENSSDUG00000013359) #7	P3H3 (ENSSDUG00000013324) #10	gnb3a (ENSSDUG00000013312) #9	cdca3 (ENSSDUG00000013300) #8	pex5 (ENSSDUG00000013227)	CLSTN3 (ENSSDUG00000013183)	lpcat3 (ENSSDUG00000013113)	tpi1b (ENSSDUG00000013070)	ENSSDUG00000013057	ENSSDUG00000013033	ENO2 (ENSSDUG00000013007)	mlf2 (ENSSDUG00000012972) #15	cdc42l (ENSSDUG00000012950)	wnt4b (ENSSDUG00000012919)	CHD4 (ENSSDUG00000012051) #22	ptpn6 (ENSSDUG00000011963)	rbp5 (ENSSDUG00000011941)	ENSSDUG00000011920	ENSSDUG00000011894	c1r (ENSSDUG00000011807)	ENSSDUG00000011795 #29	vamp1b (ENSSDUG00000011784)	mrpl51 (ENSSDUG00000011778) #27	ENSSDUG00000011758	ENSSDUG00000011699 #34	tnfrsf1a (ENSSDUG00000011676) #33	IFFO1 (ENSSDUG00000011662) ##24	opn9 (ENSSDUG00000011638)	gapdh (ENSSDUG00000011613) #25	nppcl (ENSSDUG00000011571)
Yellowtail amberjack	MODERN SPECIES	3126	ENSSLDG00000024192	usp5 (ENSSLDG00000024164) #7	ENSSLDG00000024153 #10	gnb3a (ENSSLDG00000024115) #9	cdca3 (ENSSLDG00000024138) #8	pex5 (ENSSLDG00000024064)	CLSTN3 (ENSSLDG00000023986)	lpcat3 (ENSSLDG00000023964)	tpi1b (ENSSLDG00000023943)	ENSSLDG00000023938	ENSSLDG00000023931	ENO2 (ENSSLDG00000023899)	mlf2 (ENSSLDG00000023881) #15	cdc42l (ENSSLDG00000023872)	wnt4b (ENSSLDG00000023860)	CHD4 (ENSSLDG00000023821) #22	ptpn6 (ENSSLDG00000023788)	rbp5 (ENSSLDG00000023776)	ENSSLDG00000023763	ENSSLDG00000023748	c1r (ENSSLDG00000023710)	ENSSLDG00000023650 #29	vamp1b (ENSSLDG00000023642)	mrpl51 (ENSSLDG00000023639) #27	ENSSLDG00000023628	ENSSLDG00000023616 #34	tnfrsf1a (ENSSLDG00000023603) #33	IFFO1 (ENSSLDG00000023563) ##24	opn9 (ENSSLDG00000023539)	gapdh (ENSSLDG00000023514) #25	nppcl (ENSSLDG00000023511)
Barramundi perch	MODERN SPECIES	161	cd4-1 (ENSLCAG00010004608) #12	ENSLCAG00010004612	usp5 (ENSLCAG00010004627) #7	P3H3 (ENSLCAG00010004651) #10	gnb3a (ENSLCAG00010004656) #9	cdca3 (ENSLCAG00010004658) #8	pex5 (ENSLCAG00010004688)	CLSTN3 (ENSLCAG00010004863)	lpcat3 (ENSLCAG00010005166)	tpi1b (ENSLCAG00010005177)	ENSLCAG00010005191	ENO2 (ENSLCAG00010005210)	mlf2 (ENSLCAG00010005249) #15	cdc42l (ENSLCAG00010005257)	wnt4b (ENSLCAG00010005266)	CHD4 (ENSLCAG00010005550) #22	ENSLCAG00010007000	ptpn6 (ENSLCAG00010007146)	rbp5 (ENSLCAG00010007659)	ENSLCAG00010007669	ENSLCAG00010007677	ENSLCAG00010007697
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00940000176033	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Turbot	MODERN SPECIES		ENSSMAG00000010380	usp5 (ENSSMAG00000010392) #7	ENSSMAG00000010443 #10	gnb3a (ENSSMAG00000010465) #9	ENSSMAG00000023441	pex5 (ENSSMAG00000010517)	ENSSMAG00000010644	lpcat3 (ENSSMAG00000010753)	tpi1b (ENSSMAG00000010806)	ENSSMAG00000010821	ENSSMAG00000010829	ENSSMAG00000010850	mlf2 (ENSSMAG00000031916) #15	cdc42l (ENSSMAG00000010911)	wnt4b (ENSSMAG00000010935)	ENSSMAG00000010969 #22	ptpn6 (ENSSMAG00000011269)	rbp5 (ENSSMAG00000011365)	ENSSMAG00000011373	ENSSMAG00000011384	c1r (ENSSMAG00000011398)	ENSSMAG00000011433 #29	ENSSMAG00000011452	ENSSMAG00000011479 #27	ENSSMAG00000011505	ENSSMAG00000011489	tnfrsf1a (ENSSMAG00000029921) #33	ENSSMAG00000011533 ##24	gapdh (ENSSMAG00000011551) #25	nppcl (ENSSMAG00000011599)	ENSSMAG00000011611 #26
Tongue sole	MODERN SPECIES	4	ENSCSEG00000020138	emg1 (ENSCSEG00000020136)	nop2 (ENSCSEG00000020126) #23	ing4 (ENSCSEG00000020055) #19	ncapd2 (ENSCSEG00000020024) #26	nppcl (ENSCSEG00000020017)	gapdh (ENSCSEG00000020009) #25	IFFO1 (ENSCSEG00000019999) ##24	ENSCSEG00000019994 #33	ENSCSEG00000019985 #34	ENSCSEG00000019982	mrpl51 (ENSCSEG00000019976) #27	vamp1b (ENSCSEG00000019972)	cdc42l (ENSCSEG00000019970)	wnt4b (ENSCSEG00000019966)	CHD4 (ENSCSEG00000019943) #22	ptpn6 (ENSCSEG00000019874)	rbp5 (ENSCSEG00000019868)	ENSCSEG00000019863 #29	mlf2 (ENSCSEG00000019862) #15	ENO2 (ENSCSEG00000019850)	ENSCSEG00000019848	tpi1b (ENSCSEG00000019843)	lpcat3 (ENSCSEG00000019831)	CLSTN3 (ENSCSEG00000019819)	pex5 (ENSCSEG00000019811)	ENSCSEG00000019806	gnb3a (ENSCSEG00000019798) #9	P3H3 (ENSCSEG00000019791) #10	usp5 (ENSCSEG00000019783) #7	ENSCSEG00000019777
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00390000001745.a #12	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Fugu	MODERN SPECIES	19	gnb3a (ENSTRUG00000010132) #9	cdca3 (ENSTRUG00000025706) #8	pex5 (ENSTRUG00000009964)	lpcat3 (ENSTRUG00000009195)	CLSTN3 (ENSTRUG00000009336)	lpcat3 (ENSTRUG00000031023)	tpi1b (ENSTRUG00000008984)	ENSTRUG00000023354	ENSTRUG00000008865	ENSTRUG00000008798	dnali1 (ENSTRUG00000008687)	ENO2 (ENSTRUG00000008471)	mlf2 (ENSTRUG00000008461) #15	cdc42l (ENSTRUG00000027633)	wnt4b (ENSTRUG00000007912)	CHD4 (ENSTRUG00000007202) #22	ptpn6 (ENSTRUG00000006647)	rbp5 (ENSTRUG00000006431)	ENSTRUG00000023940	c1r (ENSTRUG00000032830)	ENSTRUG00000028166 #29	ENSTRUG00000026890	ENSTRUG00000006385	ENSTRUG00000004928	ENSTRUG00000020996	ENSTRUG00000022920 #29	vamp1b (ENSTRUG00000004770)	mrpl51 (ENSTRUG00000025696) #27	ENSTRUG00000025885	ENSTRUG00000022658 #34	tnfrsf1a (ENSTRUG00000004666) #33
Tetraodon	MODERN SPECIES	23	znf384b (ENSTNIG00000008018) #18	si:ch211-154o6.3 (ENSTNIG00000008019)	cops7a (ENSTNIG00000008020) #16	ENSTNIG00000008021	ENSTNIG00000008022	usp5 (ENSTNIG00000008023) #7	cd4-1 (ENSTNIG00000001042) #12	ENSTNIG00000001017	usp5 (ENSTNIG00000008024) #7	ENSTNIG00000008025 #10	gnb3a (ENSTNIG00000008026) #9	pex5 (ENSTNIG00000008027)	pex5 (ENSTNIG00000008028)	CLSTN3 (ENSTNIG00000008029)	lpcat3 (ENSTNIG00000008030)	CHD4 (ENSTNIG00000008031) #22	ptpn6 (ENSTNIG00000008032)	rbp5 (ENSTNIG00000008033)	ENSTNIG00000008034	ENSTNIG00000008035	c1r (ENSTNIG00000008036)	ENSTNIG00000008037 #29	vamp1b (ENSTNIG00000005766)	mrpl51 (ENSTNIG00000008038) #27	ENSTNIG00000008039 #34	tnfrsf1a (ENSTNIG00000008040) #33	IFFO1 (ENSTNIG00000008041) ##24	gapdh (ENSTNIG00000008042) #25	nppcl (ENSTNIG00000008043)	ncapd2 (ENSTNIG00000008044) #26	ing4 (ENSTNIG00000008045) #19
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Ballan wrasse	MODERN SPECIES	323	ENSLBEG00000011357	usp5 (ENSLBEG00000011409) #7	P3H3 (ENSLBEG00000011556) #10	gnb3a (ENSLBEG00000011589) #9	cdca3 (ENSLBEG00000011614) #8	pex5 (ENSLBEG00000011713)	CLSTN3 (ENSLBEG00000012015)	lpcat3 (ENSLBEG00000012097)	tpi1b (ENSLBEG00000012174)	ENSLBEG00000012197	ENSLBEG00000012218	ENO2 (ENSLBEG00000012256)	mlf2 (ENSLBEG00000012308) #15	ENSLBEG00000012371	wnt4b (ENSLBEG00000012397)	CHD4 (ENSLBEG00000012434) #22	ptpn6 (ENSLBEG00000012502)	rbp5 (ENSLBEG00000012595)	ENSLBEG00000012563
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a.f.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a.f.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a.f.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
European seabass	MODERN SPECIES	6	cd4-1 (ENSDLAG00005005402) #12	usp5 (ENSDLAG00005005464) #7	P3H3 (ENSDLAG00005006767) #10	gnb3a (ENSDLAG00005006773) #9	cdca3 (ENSDLAG00005006780) #8	pex5 (ENSDLAG00005006787)	ENSDLAG00005006886	lpcat3 (ENSDLAG00005008443)	tpi1b (ENSDLAG00005008552)	ENSDLAG00005008630	ENSDLAG00005008641	ENSDLAG00005008682	mlf2 (ENSDLAG00005009272) #15	cdc42l (ENSDLAG00005028019)	wnt4b (ENSDLAG00005009297)	ENSDLAG00005009374 #22	ptpn6 (ENSDLAG00005011202)	c1r (ENSDLAG00005027182)	ENSDLAG00005034647	ENSDLAG00005034042	ENSDLAG00005012350 #29	ENSDLAG00005000119	ENSDLAG00005031484 #27	ENSDLAG00005000147	ENSDLAG00005000159 #34	tnfrsf1a (ENSDLAG00005000170) #33	ENSDLAG00005033949 ##24	opn9 (ENSDLAG00005000197)	gapdh (ENSDLAG00005000264) #25	nppcl (ENSDLAG00005000338)	ENSDLAG00005000362 #26
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005018639 #12	ENSLCRG00005018643	usp5 (ENSLCRG00005018646) #7	gnb3a (ENSLCRG00005019274) #9	cdca3 (ENSLCRG00005019275) #8	pex5 (ENSLCRG00005019283)	CLSTN3 (ENSLCRG00005019795)	lpcat3 (ENSLCRG00005020021)	tpi1b (ENSLCRG00005020027)	ENSLCRG00005020032	ENSLCRG00005020033	ENO2 (ENSLCRG00005006301)	mlf2 (ENSLCRG00005006464) #15	cdc42l (ENSLCRG00005006465)	wnt4b (ENSLCRG00005006467)	CHD4 (ENSLCRG00005006516) #22	ptpn6 (ENSLCRG00005012873)	rbp5 (ENSLCRG00005013791)	ENSLCRG00005013796	ENSLCRG00005013802	c1r (ENSLCRG00005013813)	c1r (ENSLCRG00005013822)	ENSLCRG00005013827	CHRM3 (ENSLCRG00005013830)	FMN2 (ENSLCRG00005013833)	ENSLCRG00005013836	ENSLCRG00005013839	tmem26b (ENSLCRG00005013841)	ENSLCRG00005013842	ENSLCRG00005013843	ENSLCRG00005013844
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010025112	usp5 (ENSSAUG00010025108) #7	P3H3 (ENSSAUG00010025104) #10	gnb3a (ENSSAUG00010025099) #9	cdca3 (ENSSAUG00010025094) #8	pex5 (ENSSAUG00010024691)	CLSTN3 (ENSSAUG00010024228)	lpcat3 (ENSSAUG00010024215)	tpi1b (ENSSAUG00010024213)	ENSSAUG00010024211	ENSSAUG00010024210	ENO2 (ENSSAUG00010024168)	mlf2 (ENSSAUG00010024166) #15	cdc42l (ENSSAUG00010024165)	wnt4b (ENSSAUG00010024162)	CHD4 (ENSSAUG00010016793) #22	ptpn6 (ENSSAUG00010016649)	rbp5 (ENSSAUG00010016646)	ENSSAUG00010016645	ENSSAUG00010016643	ENSSAUG00010016642	ENSSAUG00010016641	c1r (ENSSAUG00010016637)	ENSSAUG00010016635	c1r (ENSSAUG00010016621)	c1r (ENSSAUG00010016612)	ENSSAUG00010016608 #29	vamp1b (ENSSAUG00010016603)	mrpl51 (ENSSAUG00010016600) #27	ENSSAUG00010016597	ENSSAUG00010016595 #34
Perciformes	ANCESTRAL SPECIES	3	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Lumpfish	MODERN SPECIES	7	ENSCLMG00005006569 #12	ENSCLMG00005006566	usp5 (ENSCLMG00005006517) #7	P3H3 (ENSCLMG00005006511) #10	gnb3a (ENSCLMG00005006510) #9	cdca3 (ENSCLMG00005006508) #8	pex5 (ENSCLMG00005006479)	CLSTN3 (ENSCLMG00005006477)	lpcat3 (ENSCLMG00005006474)	tpi1b (ENSCLMG00005006471)	ENSCLMG00005006470	ENO2 (ENSCLMG00005006430)	mlf2 (ENSCLMG00005006426) #15	cdc42l (ENSCLMG00005006422)	wnt4b (ENSCLMG00005006421)	CHD4 (ENSCLMG00005002733) #22	ptpn6 (ENSCLMG00005002665)	rbp5 (ENSCLMG00005002661)	ENSCLMG00005002660	ENSCLMG00005002657	c1r (ENSCLMG00005002655)	ENSCLMG00005002654 #29	vamp1b (ENSCLMG00005002652)	mrpl51 (ENSCLMG00005002648) #27	ENSCLMG00005002647	ENSCLMG00005002644 #34	tnfrsf1a (ENSCLMG00005002643) #33	IFFO1 (ENSCLMG00005002640) ##24	opn9 (ENSCLMG00005002636)	gapdh (ENSCLMG00005002539) #25	nppcl (ENSCLMG00005002536)
Stickleback	MODERN SPECIES	19	cd4-1 (ENSGACG00000009832) #12	usp5 (ENSGACG00000009840) #7	P3H3 (ENSGACG00000009861) #10	gnb3a (ENSGACG00000009868) #9	ENSGACG00000009904 #8	pex5 (ENSGACG00000009907)	CLSTN3 (ENSGACG00000009910)	lpcat3 (ENSGACG00000009917)	tpi1b (ENSGACG00000009950)	ENSGACG00000010009	ENSGACG00000010011	ENO2 (ENSGACG00000010016)	mlf2 (ENSGACG00000010056) #15	cdc42l (ENSGACG00000010059)	wnt4b (ENSGACG00000010089)	CHD4 (ENSGACG00000010099) #22	ptpn6 (ENSGACG00000010111)	rbp5 (ENSGACG00000010125)	ENSGACG00000010128	c1r (ENSGACG00000010132)	ENSGACG00000010169 #29	vamp1b (ENSGACG00000010179)	mrpl51 (ENSGACG00000010193) #27	ENSGACG00000010195 #34	tnfrsf1a (ENSGACG00000010200) #33	IFFO1 (ENSGACG00000010207) ##24	ENSGACG00000010213	opn9 (ENSGACG00000010215)	gapdh (ENSGACG00000010219) #25	nppcl (ENSGACG00000010291)	ncapd2 (ENSGACG00000010292) #26
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263505.b.b.b.a.b.b	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT01000000221290	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Pike perch	MODERN SPECIES	15	ENSSLUG00000023938	usp5 (ENSSLUG00000023904) #7	P3H3 (ENSSLUG00000023888) #10	gnb3a (ENSSLUG00000023879) #9	cdca3 (ENSSLUG00000023876) #8	pex5 (ENSSLUG00000023646)	CLSTN3 (ENSSLUG00000023429)	lpcat3 (ENSSLUG00000023370)	tpi1b (ENSSLUG00000023351)	ENSSLUG00000023344	ENSSLUG00000023338	ENO2 (ENSSLUG00000023248)	mlf2 (ENSSLUG00000023222) #15	cdc42l (ENSSLUG00000023214)	wnt4b (ENSSLUG00000023205)	CHD4 (ENSSLUG00000014277) #22	ptpn6 (ENSSLUG00000012474)	rbp5 (ENSSLUG00000012411)	ENSSLUG00000012402	ENSSLUG00000012394	c1r (ENSSLUG00000012329)	ENSSLUG00000012309 #29	vamp1b (ENSSLUG00000012307)	mrpl51 (ENSSLUG00000012300) #27	ENSSLUG00000012295	ENSSLUG00000012291	tnfrsf1a (ENSSLUG00000012284) #33	IFFO1 (ENSSLUG00000012278) ##24	opn9 (ENSSLUG00000012270)	gapdh (ENSSLUG00000010963) #25	nppcl (ENSSLUG00000010931)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	7	si:ch211-154o6.3 (ENSCGOG00000003601)	cops7a (ENSCGOG00000003594) #16	cldc1 (ENSCGOG00000003591)	ENSCGOG00000003586 #12	ENSCGOG00000003584	usp5 (ENSCGOG00000002951) #7	mlf2 (ENSCGOG00000002917) #15	wnt4b (ENSCGOG00000002888)	CHD4 (ENSCGOG00000002674) #22	ENSCGOG00000002613 #22	ENO2 (ENSCGOG00000002611)	ENO2 (ENSCGOG00000002584)	mlf2 (ENSCGOG00000002581) #15	cdc42l (ENSCGOG00000002487)	wnt4b (ENSCGOG00000002447)	CHD4 (ENSCGOG00000002438) #22	ENSCGOG00000002434	ptpn6 (ENSCGOG00000001844)	rbp5 (ENSCGOG00000001814)	ENSCGOG00000001810	ENSCGOG00000001804	ENSCGOG00000001801	gapdh (ENSCGOG00000001626) #25	nppcl (ENSCGOG00000008532)	ncapd2 (ENSCGOG00000008211) #26	ing4 (ENSCGOG00000008180) #19	nop2 (ENSCGOG00000008032) #23	emg1 (ENSCGOG00000008021)	ENSCGOG00000008019	ENSCGOG00000008008	zyx (ENSCGOG00000008004)
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000004854	mdc1 (ENSCGOG00000004843)	ENSCGOG00000004817	flot1b (ENSCGOG00000004148)	DDR1 (ENSCGOG00000003979)	gnl1 (ENSCGOG00000003618)	znf384b (ENSCGOG00000003604) #18	si:ch211-154o6.3 (ENSCGOG00000003601)	cops7a (ENSCGOG00000003594) #16	cldc1 (ENSCGOG00000003591)	ENSCGOG00000003586 #12	ENSCGOG00000003584	usp5 (ENSCGOG00000002951) #7	mlf2 (ENSCGOG00000002917) #15	wnt4b (ENSCGOG00000002888)	CHD4 (ENSCGOG00000002674) #22	ENSCGOG00000002613 #22	ENO2 (ENSCGOG00000002611)	ENO2 (ENSCGOG00000002584)	mlf2 (ENSCGOG00000002581) #15	cdc42l (ENSCGOG00000002487)	wnt4b (ENSCGOG00000002447)	CHD4 (ENSCGOG00000002438) #22	ENSCGOG00000002434	ptpn6 (ENSCGOG00000001844)	rbp5 (ENSCGOG00000001814)	ENSCGOG00000001810	ENSCGOG00000001804	ENSCGOG00000001801	gapdh (ENSCGOG00000001626) #25	nppcl (ENSCGOG00000008532)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.d.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.d.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Mangrove rivulus	MODERN SPECIES	33	usp5 (ENSKMAG00000008774) #7	P3H3 (ENSKMAG00000008742) #10	gnb3a (ENSKMAG00000008691) #9	cdca3 (ENSKMAG00000008656) #8	pex5 (ENSKMAG00000008509)	CLSTN3 (ENSKMAG00000008381)	lpcat3 (ENSKMAG00000008293)	tpi1b (ENSKMAG00000008211)	ENSKMAG00000008200	ENSKMAG00000008170	ENO2 (ENSKMAG00000008116)	mlf2 (ENSKMAG00000008091) #15	cdc42l (ENSKMAG00000008074)	cdc42l (ENSKMAG00000008044)	wnt4b (ENSKMAG00000008001)	CHD4 (ENSKMAG00000007932) #22	ptpn6 (ENSKMAG00000007851)	rbp5 (ENSKMAG00000007816)	ENSKMAG00000007791	ENSKMAG00000007780	c1r (ENSKMAG00000007760)	ENSKMAG00000007746 #29	vamp1b (ENSKMAG00000007705)	mrpl51 (ENSKMAG00000007684) #27	ENSKMAG00000007663 #34	tnfrsf1a (ENSKMAG00000007634) #33	IFFO1 (ENSKMAG00000007591) ##24	gapdh (ENSKMAG00000007391) #25	nppcl (ENSKMAG00000007368)	ncapd2 (ENSKMAG00000007222) #26	ing4 (ENSKMAG00000007187) #19
Turquoise killifish	MODERN SPECIES	1614	usp5 (ENSNFUG00015001432) #7	P3H3 (ENSNFUG00015001342) #10	gnb3a (ENSNFUG00015001334) #9	cdca3 (ENSNFUG00015001327) #8	PEX5 (ENSNFUG00015001313)	ENSNFUG00015001303	CLSTN3 (ENSNFUG00015001139)	LPCAT3 (ENSNFUG00015001088)	tpi1b (ENSNFUG00015001071)	ENSNFUG00015001066	ENSNFUG00015001061	ENO2 (ENSNFUG00015000748)	mlf2 (ENSNFUG00015000592) #15	cdc42l (ENSNFUG00015000579)	WNT4B (ENSNFUG00015000563)	CHD4 (ENSNFUG00015000413) #22	ptpn6 (ENSNFUG00015000317)	RBP1A (ENSNFUG00015000267)	c1r (ENSNFUG00015000234)	ENSNFUG00015000190 #29	ENSNFUG00015000162	vamp1b (ENSNFUG00015002717)	MRPL51 (ENSNFUG00015002713) #27	ENSNFUG00015002706	ENSNFUG00015002699 #34	tnfrsf1a (ENSNFUG00015002691) #33	IFFO1 (ENSNFUG00015002677) ##24	GAPDH (ENSNFUG00015002376) #25	CNP-1 (ENSNFUG00015002287)	ncapd2 (ENSNFUG00015002195) #26	NCAPD2 (ENSNFUG00015002147) #19
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.d.a	ENSGT00940000153675.a.a.a.a.a.a.c	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.c	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Poecilia	ANCESTRAL SPECIES		ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.c	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
NAME_6	ANCESTRAL SPECIES	24	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b.b	ENSGT00940000153675.a.a.a.a.a.a.d.b.a	ENSGT00940000153675.a.a.a.a.a.a.c	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Sailfin molly	MODERN SPECIES	441	usp5 (ENSPLAG00000003503) #7	P3H3 (ENSPLAG00000003547) #10	gnb3a (ENSPLAG00000000055) #9	cdca3 (ENSPLAG00000003574) #8	pex5 (ENSPLAG00000003602)	ENSPLAG00000003640	lpcat3 (ENSPLAG00000003680)	tpi1b (ENSPLAG00000000754)	ENSPLAG00000003694	ENSPLAG00000003729	ENO2 (ENSPLAG00000003745)	mlf2 (ENSPLAG00000003776) #15	cdc42l (ENSPLAG00000003870)	cdc42l (ENSPLAG00000003883)	wnt4b (ENSPLAG00000003897)	CHD4 (ENSPLAG00000004006) #22	ptpn6 (ENSPLAG00000004062)	rbp5 (ENSPLAG00000004079)
Amazon molly	MODERN SPECIES	286	P3H3 (ENSPFOG00000015007) #10	gnb3a (ENSPFOG00000014957) #9	cdca3 (ENSPFOG00000014943) #8	pex5 (ENSPFOG00000014889)	ENSPFOG00000014661	lpcat3 (ENSPFOG00000014564)	tpi1b (ENSPFOG00000014538)	ENSPFOG00000014532	ENSPFOG00000014520	ENO2 (ENSPFOG00000014388)	cdc42l (ENSPFOG00000023246)	mlf2 (ENSPFOG00000014383) #15	cdc42l (ENSPFOG00000014382)	cdc42l (ENSPFOG00000014351)	wnt4b (ENSPFOG00000014292)	CHD4 (ENSPFOG00000013889) #22	ptpn6 (ENSPFOG00000013863)	rbp5 (ENSPFOG00000013861)	ENSPFOG00000013858	ENSPFOG00000024460	c1r (ENSPFOG00000013760)	ENSPFOG00000013728 #29	vamp1b (ENSPFOG00000013702)	mrpl51 (ENSPFOG00000013680) #27	ENSPFOG00000013679	ENSPFOG00000013664 #34	tnfrsf1a (ENSPFOG00000013634) #33	ENSPFOG00000022946	ENSPFOG00000021871	IFFO1 (ENSPFOG00000013521) ##24	gapdh (ENSPFOG00000024059) #25
Guppy	MODERN SPECIES	446	usp5 (ENSPREG00000012543) #7	P3H3 (ENSPREG00000012490) #10	gnb3a (ENSPREG00000012466) #9	cdca3 (ENSPREG00000012433) #8	pex5 (ENSPREG00000012158)	CLSTN3 (ENSPREG00000012088)	lpcat3 (ENSPREG00000012035)	tpi1b (ENSPREG00000011941)	ENSPREG00000011921	ENSPREG00000011909	ENO2 (ENSPREG00000011872)	mlf2 (ENSPREG00000011847) #15	cdc42l (ENSPREG00000011478)	cdc42l (ENSPREG00000011423)	wnt4b (ENSPREG00000011407)	CHD4 (ENSPREG00000011359) #22	ptpn6 (ENSPREG00000011333)	rbp5 (ENSPREG00000011326)	ENSPREG00000011291	ENSPREG00000011273	ENSPREG00000011225	ENSPREG00000011152	ENSPREG00000011079 #29	vamp1b (ENSPREG00000011046)	mrpl51 (ENSPREG00000011034) #27	ENSPREG00000011015	ENSPREG00000010991 #34	tnfrsf1a (ENSPREG00000010956) #33	IFFO1 (ENSPREG00000010909) ##24	gapdh (ENSPREG00000010888) #25	nppcl (ENSPREG00000010852)
Platyfish	MODERN SPECIES	17	ENSXMAG00000011050	usp5 (ENSXMAG00000011056) #7	P3H3 (ENSXMAG00000011089) #10	gnb3a (ENSXMAG00000011122) #9	cdca3 (ENSXMAG00000011130) #8	pex5 (ENSXMAG00000011133)	CLSTN3 (ENSXMAG00000011155)	lpcat3 (ENSXMAG00000011186)	tpi1 (ENSXMAG00000011196)	ENSXMAG00000022330	ENSXMAG00000026000	ENO2 (ENSXMAG00000011215)	mlf2 (ENSXMAG00000011227) #15	cdc42l (ENSXMAG00000011242)	wnt4b (ENSXMAG00000011250)	CHD4 (ENSXMAG00000011263) #22	ptpn6 (ENSXMAG00000011352)	rbp5 (ENSXMAG00000011354)	ENSXMAG00000011370	ENSXMAG00000026464	c1r (ENSXMAG00000011372)	ENSXMAG00000011401 #29	vamp1b (ENSXMAG00000011407)	mrpl51 (ENSXMAG00000011410) #27	ENSXMAG00000011411	ENSXMAG00000011412 #34	tnfrsf1a (ENSXMAG00000024956) #33	IFFO1 (ENSXMAG00000011423) ##24	gapdh (ENSXMAG00000011432) #25	nppcl (ENSXMAG00000026582)	ncapd2 (ENSXMAG00000011455) #26
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.d.b	ENSGT00940000153675.a.a.a.a.a.a.d.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Sheepshead minnow	MODERN SPECIES	160	ENSCVAG00000022810	usp5 (ENSCVAG00000000588) #7	P3H3 (ENSCVAG00000000837) #10	gnb3a (ENSCVAG00000022940) #9	cdca3 (ENSCVAG00000022957) #8	pex5 (ENSCVAG00000023048)	CLSTN3 (ENSCVAG00000023161)	lpcat3 (ENSCVAG00000023202)	tpi1b (ENSCVAG00000023235)	ENSCVAG00000023242	ENSCVAG00000023271	ENO2 (ENSCVAG00000001123)	mlf2 (ENSCVAG00000001124) #15	cdc42l (ENSCVAG00000001125)	wnt4b (ENSCVAG00000001126)	CHD4 (ENSCVAG00000001128) #22	ptpn6 (ENSCVAG00000001129)	rbp5 (ENSCVAG00000001130)	ENSCVAG00000001131	ENSCVAG00000001132	c1r (ENSCVAG00000001134)	ENSCVAG00000001136 #29	vamp1b (ENSCVAG00000001137)	mrpl51 (ENSCVAG00000001138) #27	ENSCVAG00000001140	ENSCVAG00000001143 #34	tnfrsf1a (ENSCVAG00000001144) #33	IFFO1 (ENSCVAG00000001148) ##24	gapdh (ENSCVAG00000001151) #25	nppcl (ENSCVAG00000000045)	ncapd2 (ENSCVAG00000001158) #26
Oryzias	ANCESTRAL SPECIES	2	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g.b	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Indian medaka	MODERN SPECIES	5	ENSOMEG00000014158	ENSOMEG00000014114	P3H3 (ENSOMEG00000014020) #10	gnb3a (ENSOMEG00000013971) #9	cdca3 (ENSOMEG00000013921) #8	pex5 (ENSOMEG00000013891)	CLSTN3 (ENSOMEG00000013818)	lpcat3 (ENSOMEG00000013728)	tpi1b (ENSOMEG00000013681)	ENSOMEG00000013625	ENSOMEG00000013607	ENO2 (ENSOMEG00000013561)	mlf2 (ENSOMEG00000013518) #15	cdc42l (ENSOMEG00000013478)	wnt4b (ENSOMEG00000013453)	CHD4 (ENSOMEG00000013408) #22	ptpn6 (ENSOMEG00000013303)	rbp5 (ENSOMEG00000013276)	ENSOMEG00000013249	ENSOMEG00000013221	c1r (ENSOMEG00000013179)	ENSOMEG00000013100 #29	vamp1b (ENSOMEG00000013069)	mrpl51 (ENSOMEG00000013053) #27	ENSOMEG00000013020	ENSOMEG00000013005 #34	tnfrsf1a (ENSOMEG00000012971) #33	IFFO1 (ENSOMEG00000012942) ##24	gapdh (ENSOMEG00000012911) #25	nppcl (ENSOMEG00000012872)	ncapd2 (ENSOMEG00000012846) #26
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000014125	usp5 (ENSOJAG00000013746) #7	P3H3 (ENSOJAG00000013709) #10	gnb3a (ENSOJAG00000013683) #9	cdca3 (ENSOJAG00000013673) #8	pex5 (ENSOJAG00000013608)	CLSTN3 (ENSOJAG00000013335)	lpcat3 (ENSOJAG00000013232)	tpi1b (ENSOJAG00000013155)	ENSOJAG00000013143	ENSOJAG00000013133	ENO2 (ENSOJAG00000012034)	mlf2 (ENSOJAG00000011973) #15	cdc42l (ENSOJAG00000011945)	wnt4b (ENSOJAG00000011876)	CHD4 (ENSOJAG00000009186) #22	ptpn6 (ENSOJAG00000008029)	rbp5 (ENSOJAG00000007923)	ENSOJAG00000007906	ENSOJAG00000007845	ENSOJAG00000007837	c1r (ENSOJAG00000007602)	ENSOJAG00000007561 #29	vamp1b (ENSOJAG00000007549)	mrpl51 (ENSOJAG00000007511) #27	ENSOJAG00000007504	ENSOJAG00000007490 #34	tnfrsf1a (ENSOJAG00000015148) #33	IFFO1 (ENSOJAG00000015141) ##24	gapdh (ENSOJAG00000014377) #25	nppcl (ENSOJAG00000014352)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a.b	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A	ENSGT00940000153566.a #26
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000012768	usp5 (ENSORLG00000012752) #7	P3H3 (ENSORLG00000012703) #10	gnb3a (ENSORLG00000012677) #9	cdca3 (ENSORLG00000027006) #8	pex5 (ENSORLG00000022024)	CLSTN3 (ENSORLG00000012657)	lpcat3 (ENSORLG00000012627)	tpi1b (ENSORLG00000012599)	ENSORLG00000012581	ENSORLG00000025219	ENO2 (ENSORLG00000012577)	mlf2 (ENSORLG00000012544) #15	cdc42l (ENSORLG00000024257)	wnt4b (ENSORLG00000012515)	ENSORLG00000012477 #22	ptpn6 (ENSORLG00000012425)	rbp5 (ENSORLG00000012372)	ENSORLG00000028634	ENSORLG00000012367	c1r (ENSORLG00000012352)	ENSORLG00000012315 #29	vamp1b (ENSORLG00000012300)	mrpl51 (ENSORLG00000026054) #27	ENSORLG00000023416	ENSORLG00000012267 #34	tnfrsf1a (ENSORLG00000012260) #33	IFFO1 (ENSORLG00000029960) ##24	gapdh (ENSORLG00000012224) #25	wu:fj39g12 (ENSORLG00000012204)	ENSORLG00000024287
Chinese medaka	MODERN SPECIES	467	si:ch211-154o6.3 (ENSOSIG00000019783)	cops7a (ENSOSIG00000019778) #16	ENSOSIG00000019774	usp5 (ENSOSIG00000017062) #7	gnb3a (ENSOSIG00000016954) #9	cdca3 (ENSOSIG00000016950) #8	pex5 (ENSOSIG00000016936)	CLSTN3 (ENSOSIG00000014425)	lpcat3 (ENSOSIG00000014408)	tpi1b (ENSOSIG00000014394)	ENSOSIG00000014392	ENSOSIG00000014390	mlf2 (ENSOSIG00000014389) #15	cdc42l (ENSOSIG00000014388)	wnt4b (ENSOSIG00000014384)	CHD4 (ENSOSIG00000013891) #22	ptpn6 (ENSOSIG00000012454)	rbp5 (ENSOSIG00000012439)	ENSOSIG00000012435	ENSOSIG00000012432	c1r (ENSOSIG00000012425)	ENSOSIG00000012418 #29	vamp1b (ENSOSIG00000012413)	mrpl51 (ENSOSIG00000012409) #27	ENSOSIG00000012405	tnfrsf1a (ENSOSIG00000012404) #33	IFFO1 (ENSOSIG00000012400) ##24	gapdh (ENSOSIG00000011836) #25	nppcl (ENSOSIG00000011826)	ncapd2 (ENSOSIG00000011789) #26	ing4 (ENSOSIG00000011785) #19
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000157473.b.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000157473.b.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Burton s mouthbrooder	MODERN SPECIES	338	usp5 (ENSHBUG00000016493) #7	P3H3 (ENSHBUG00000016431) #10	gnb3a (ENSHBUG00000016419) #9	cdca3 (ENSHBUG00000016398) #8	pex5 (ENSHBUG00000016380)	CLSTN3 (ENSHBUG00000016357)	lpcat3 (ENSHBUG00000016290)	tpi1b (ENSHBUG00000016256)	tpi1b (ENSHBUG00000016207)	ENSHBUG00000016202	ENSHBUG00000016194	ENO2 (ENSHBUG00000016184)	mlf2 (ENSHBUG00000016101) #15	cdc42l (ENSHBUG00000016055)	wnt4b (ENSHBUG00000016023)	CHD4 (ENSHBUG00000016000) #22	ptpn6 (ENSHBUG00000015887)	rbp5 (ENSHBUG00000015787)	ENSHBUG00000000461	ENSHBUG00000015777	c1r (ENSHBUG00000015759)	c1r (ENSHBUG00000015714)	ENSHBUG00000015520 #29	vamp1b (ENSHBUG00000015513)	mrpl51 (ENSHBUG00000015507) #27	ENSHBUG00000015487	ENSHBUG00000015475 #34	tnfrsf1a (ENSHBUG00000015452) #33	IFFO1 (ENSHBUG00000015385) ##24	gapdh (ENSHBUG00000015326) #25	nppcl (ENSHBUG00000015288)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.a	ENSGT00390000013354.b.a.c.b	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886.a	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00950000183084.b.a.a.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Eastern happy	MODERN SPECIES	2	usp5 (ENSACLG00000025027) #7	P3H3 (ENSACLG00000024992) #10	gnb3a (ENSACLG00000024967) #9	cdca3 (ENSACLG00000024964) #8	pex5 (ENSACLG00000024943)	CLSTN3 (ENSACLG00000024926)	lpcat3 (ENSACLG00000024914)	tpi1b (ENSACLG00000024729)	tpi1b (ENSACLG00000024702)	ENSACLG00000024699	ENSACLG00000024672	ENO2 (ENSACLG00000024650)	mlf2 (ENSACLG00000024596) #15	cdc42l (ENSACLG00000024575)	wnt4b (ENSACLG00000024555)	CHD4 (ENSACLG00000024468) #22	ptpn6 (ENSACLG00000024401)	rbp5 (ENSACLG00000024378)	ENSACLG00000024367	ENSACLG00000024330	c1r (ENSACLG00000024323)	c1r (ENSACLG00000024311)	ENSACLG00000024298 #29	vamp1b (ENSACLG00000024283)	mrpl51 (ENSACLG00000024277) #27	ENSACLG00000024272	ENSACLG00000024268	tnfrsf1a (ENSACLG00000024260) #33	IFFO1 (ENSACLG00000024040) ##24	gapdh (ENSACLG00000024004) #25	nppcl (ENSACLG00000024000)
Zebra mbuna	MODERN SPECIES	1093	usp5 (ENSMZEG00005017876) #7	P3H3 (ENSMZEG00005017868) #10	gnb3a (ENSMZEG00005017862) #9	cdca3 (ENSMZEG00005017855) #8	pex5 (ENSMZEG00005017839)	ENSMZEG00005017824	lpcat3 (ENSMZEG00005017817)	tpi1b (ENSMZEG00005017813)	tpi1b (ENSMZEG00005017807)	ENSMZEG00005017802	ENSMZEG00005017798	ENO2 (ENSMZEG00005017787)	mlf2 (ENSMZEG00005017776) #15	cdc42l (ENSMZEG00005017771)	wnt4b (ENSMZEG00005017768)	CHD4 (ENSMZEG00005017761) #22	ptpn6 (ENSMZEG00005017741)	rbp5 (ENSMZEG00005017730)	ENSMZEG00005017724	ENSMZEG00005017721	ENSMZEG00005017699	c1r (ENSMZEG00005017676)	ENSMZEG00005017663 #29	vamp1b (ENSMZEG00005017659)	mrpl51 (ENSMZEG00005017651) #27	ENSMZEG00005017646	ENSMZEG00005017640 #34	tnfrsf1a (ENSMZEG00005017631) #33	IFFO1 (ENSMZEG00005017621) ##24	gapdh (ENSMZEG00005017606) #25	nppcl (ENSMZEG00005017599)
P. nyererei	MODERN SPECIES	340	usp5 (ENSPNYG00000022853) #7	P3H3 (ENSPNYG00000022876) #10	gnb3a (ENSPNYG00000022884) #9	ENSPNYG00000022893	cdca3 (ENSPNYG00000022897) #8	pex5 (ENSPNYG00000022906)	CLSTN3 (ENSPNYG00000022943)	lpcat3 (ENSPNYG00000022959)	tpi1b (ENSPNYG00000022968)	ENSPNYG00000022976	ENSPNYG00000022982	ENO2 (ENSPNYG00000022988)	mlf2 (ENSPNYG00000022996) #15	cdc42l (ENSPNYG00000023002)	wnt4b (ENSPNYG00000023006)	CHD4 (ENSPNYG00000023020) #22	ptpn6 (ENSPNYG00000023046)	rbp5 (ENSPNYG00000023055)	ENSPNYG00000023058	ENSPNYG00000023063	c1r (ENSPNYG00000023071)	ENSPNYG00000023081	ENSPNYG00000023086 #29	vamp1b (ENSPNYG00000023090)	mrpl51 (ENSPNYG00000023096) #27	ENSPNYG00000023100	tnfrsf1a (ENSPNYG00000023108) #33	IFFO1 (ENSPNYG00000023118) ##24	gapdh (ENSPNYG00000023126) #25	nppcl (ENSPNYG00000023137)	ncapd2 (ENSPNYG00000023147) #26
Lyretail cichlid	MODERN SPECIES	386	ENSNBRG00000021175	usp5 (ENSNBRG00000021213) #7	P3H3 (ENSNBRG00000021250) #10	gnb3a (ENSNBRG00000021283) #9	cdca3 (ENSNBRG00000021305) #8	pex5 (ENSNBRG00000021334)	CLSTN3 (ENSNBRG00000021360)	lpcat3 (ENSNBRG00000021399)	tpi1b (ENSNBRG00000021445)	ENSNBRG00000021457	ENSNBRG00000021465	ENO2 (ENSNBRG00000021492)	mlf2 (ENSNBRG00000021520) #15	cdc42l (ENSNBRG00000021542)	wnt4b (ENSNBRG00000021557)	CHD4 (ENSNBRG00000021576) #22	ptpn6 (ENSNBRG00000021680)	rbp5 (ENSNBRG00000021709)	ENSNBRG00000021719	ENSNBRG00000021730	c1r (ENSNBRG00000021761)	ENSNBRG00000021811	ENSNBRG00000000257 #29	vamp1b (ENSNBRG00000000325)	mrpl51 (ENSNBRG00000000391) #27	ENSNBRG00000000404	tnfrsf1a (ENSNBRG00000000450) #33	IFFO1 (ENSNBRG00000000483) ##24	gapdh (ENSNBRG00000000547) #25	nppcl (ENSNBRG00000000591)	ncapd2 (ENSNBRG00000000599) #26
Nile tilapia	MODERN SPECIES	2	ENSONIG00000030795	usp5 (ENSONIG00000013010) #7	P3H3 (ENSONIG00000013004) #10	gnb3a (ENSONIG00000013000) #9	cdca3 (ENSONIG00000012999) #8	pex5 (ENSONIG00000012992)	CLSTN3 (ENSONIG00000012983)	lpcat3 (ENSONIG00000012981)	tpi1b (ENSONIG00000012975)	ENSONIG00000033036	ENSONIG00000035395	ENO2 (ENSONIG00000012968)	mlf2 (ENSONIG00000034709) #15	cdc42l (ENSONIG00000029398)	wnt4b (ENSONIG00000012962)	CHD4 (ENSONIG00000012953) #22	ptpn6 (ENSONIG00000012950)	rbp5 (ENSONIG00000012948)	ENSONIG00000012947	ENSONIG00000042930	c1r (ENSONIG00000012936)	c1r (ENSONIG00000039055)	ENSONIG00000012935 #29	vamp1b (ENSONIG00000035965)	mrpl51 (ENSONIG00000041702) #27	ENSONIG00000012927	ENSONIG00000036169 #34	tnfrsf1a (ENSONIG00000012925) #33	IFFO1 (ENSONIG00000012923) ##24	ENSONIG00000031664	gapdh (ENSONIG00000012916) #25
Midas cichlid	MODERN SPECIES	1183	ENSACIG00000013055	usp5 (ENSACIG00000013011) #7	ENSACIG00000012960 #10	gnb3a (ENSACIG00000012936) #9	ENSACIG00000012924	pex5 (ENSACIG00000012708)	CLSTN3 (ENSACIG00000012661)	lpcat3 (ENSACIG00000012618)	tpi1b (ENSACIG00000012596)	tpi1b (ENSACIG00000012567)	ENSACIG00000012544	ENO2 (ENSACIG00000012516)	mlf2 (ENSACIG00000012503) #15	cdc42l (ENSACIG00000012492)	wnt4b (ENSACIG00000012475)	CHD4 (ENSACIG00000012387) #22	ptpn6 (ENSACIG00000012339)	rbp5 (ENSACIG00000012325)	ENSACIG00000012296	c1r (ENSACIG00000012239)	ENSACIG00000012218	ENSACIG00000012201	ENSACIG00000012186 #29	vamp1b (ENSACIG00000012160)	mrpl51 (ENSACIG00000012151) #27	ENSACIG00000012128	tnfrsf1a (ENSACIG00000012111) #33	IFFO1 (ENSACIG00000012091) ##24	gapdh (ENSACIG00000012073) #25	nppcl (ENSACIG00000012027)	ncapd2 (ENSACIG00000011898) #26
Pomacentridae	ANCESTRAL SPECIES	50	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.d	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00390000013354.b.a.c.b	ENSGT01030000234576.D.a.b.a.a.b.f	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000159249.a	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	420	kmo (ENSSPAG00000004547)	opn3 (ENSSPAG00000004524)	cdc42ep3 (ENSSPAG00000004518)	ENSSPAG00000004503	cyp1b1 (ENSSPAG00000004496)	cdca3 (ENSSPAG00000004479) #8	pex5 (ENSSPAG00000004384)	CLSTN3 (ENSSPAG00000004312)	lpcat3 (ENSSPAG00000004287)	ENSSPAG00000004266	tpi1b (ENSSPAG00000004241)	ENO2 (ENSSPAG00000004214)	mlf2 (ENSSPAG00000004181) #15	wnt4b (ENSSPAG00000004155)	ENSSPAG00000004124	ENSSPAG00000004090 #22	ENSSPAG00000004067 #22	ptpn6 (ENSSPAG00000003979)	rbp5 (ENSSPAG00000003950)	ENSSPAG00000003936	ENSSPAG00000003898	c1r (ENSSPAG00000003873)	ENSSPAG00000003857 #29
Bicolor damselfish	MODERN SPECIES	420	opn3 (ENSSPAG00000004524)	cdc42ep3 (ENSSPAG00000004518)	ENSSPAG00000004503	cyp1b1 (ENSSPAG00000004496)	cdca3 (ENSSPAG00000004479) #8	pex5 (ENSSPAG00000004384)	CLSTN3 (ENSSPAG00000004312)	lpcat3 (ENSSPAG00000004287)	ENSSPAG00000004266	tpi1b (ENSSPAG00000004241)	ENO2 (ENSSPAG00000004214)	mlf2 (ENSSPAG00000004181) #15	wnt4b (ENSSPAG00000004155)	ENSSPAG00000004124	ENSSPAG00000004090 #22	ENSSPAG00000004067 #22	ptpn6 (ENSSPAG00000003979)	rbp5 (ENSSPAG00000003950)	ENSSPAG00000003936	ENSSPAG00000003898	c1r (ENSSPAG00000003873)	ENSSPAG00000003857 #29
Pomacentridae_A	ANCESTRAL SPECIES	44	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.d	ENSGT01100000263489.a.a.b.a.a.a.g	ENSGT00390000013354.b.a.c.b	ENSGT01030000234576.D.a.b.a.a.b.f	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT00990000203876	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A
Amphiprion	ANCESTRAL SPECIES	157	ENSGT00940000157390.o	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a.c.b	ENSGT00390000013354.b.a.d	ENSGT01030000234576.D.a.b.a.a.b.f	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a.a.b	ENSGT00940000160453 #29
Clown anemonefish	MODERN SPECIES	2741														cdc42l (ENSAOCG00000008486)	wnt4b (ENSAOCG00000008513)	CHD4 (ENSAOCG00000000507) #22	ptpn6 (ENSAOCG00000008714)	rbp5 (ENSAOCG00000008737)
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	1538									lpcat3 (ENSAPOG00000013866)	tpi1b (ENSAPOG00000013800)	ENSAPOG00000013769	ENO2 (ENSAPOG00000013757)	mlf2 (ENSAPOG00000013696) #15	cdc42l (ENSAPOG00000013663)	wnt4b (ENSAPOG00000013630)	ENSAPOG00000013598 #22	ENSAPOG00000013573 #22	ENSAPOG00000013553	ENSAPOG00000013528	rbp5 (ENSAPOG00000013494)	ENSAPOG00000013459	ENSAPOG00000013439	ENSAPOG00000013342
Spiny chromis	MODERN SPECIES	1538								lpcat3 (ENSAPOG00000013866)	tpi1b (ENSAPOG00000013800)	ENSAPOG00000013769	ENO2 (ENSAPOG00000013757)	mlf2 (ENSAPOG00000013696) #15	cdc42l (ENSAPOG00000013663)	wnt4b (ENSAPOG00000013630)	ENSAPOG00000013598 #22	ENSAPOG00000013573 #22	ENSAPOG00000013553	ENSAPOG00000013528	rbp5 (ENSAPOG00000013494)	ENSAPOG00000013459	ENSAPOG00000013439	ENSAPOG00000013342
Tiger tail seahorse	MODERN SPECIES	164	ENSHCOG00000017103	usp5 (ENSHCOG00000017144) #7	P3H3 (ENSHCOG00000017156) #10	gnb3a (ENSHCOG00000017175) #9	cdca3 (ENSHCOG00000017181) #8	pex5 (ENSHCOG00000017218)	CLSTN3 (ENSHCOG00000017258)	lpcat3 (ENSHCOG00000017304)	tpi1b (ENSHCOG00000017341)	ENSHCOG00000017355	ENSHCOG00000017375	ENO2 (ENSHCOG00000017399)	mlf2 (ENSHCOG00000017416) #15	cdc42l (ENSHCOG00000017429)	wnt4b (ENSHCOG00000017447)	CHD4 (ENSHCOG00000017525) #22	ptpn6 (ENSHCOG00000017567)	rbp5 (ENSHCOG00000017577)	ENSHCOG00000017586	ENSHCOG00000017610	ENSHCOG00000017616 #29	vamp1b (ENSHCOG00000017631)	mrpl51 (ENSHCOG00000017637) #27	ENSHCOG00000017659	ENSHCOG00000017663 #34	tnfrsf1a (ENSHCOG00000017672) #33	IFFO1 (ENSHCOG00000017700) ##24	gapdh (ENSHCOG00000017735) #25	nppcl (ENSHCOG00000017806)	ncapd2 (ENSHCOG00000017819) #26	ing4 (ENSHCOG00000017838) #19
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005013707	ENSMMDG00005013705	usp5 (ENSMMDG00005013658) #7	P3H3 (ENSMMDG00005013653) #10	gnb3a (ENSMMDG00005013650) #9	cdca3 (ENSMMDG00005013648) #8	pex5 (ENSMMDG00005012203)	CLSTN3 (ENSMMDG00005012158)	lpcat3 (ENSMMDG00005012120)	tpi1b (ENSMMDG00005012112)	ENSMMDG00005012107	ENO2 (ENSMMDG00005012071)	mlf2 (ENSMMDG00005012067) #15	ENSMMDG00005012066	wnt4b (ENSMMDG00005012050)	CHD4 (ENSMMDG00005005430) #22	ptpn6 (ENSMMDG00005005255)	rbp5 (ENSMMDG00005005254)	ENSMMDG00005005251	ENSMMDG00005005240	c1r (ENSMMDG00005004273)	ENSMMDG00005004146 #29	vamp1b (ENSMMDG00005004110)	mrpl51 (ENSMMDG00005004094) #27	ENSMMDG00005004080	tnfrsf1a (ENSMMDG00005004054) #33	IFFO1 (ENSMMDG00005004040) ##24	opn9 (ENSMMDG00005004031)	gapdh (ENSMMDG00005003998) #25	nppcl (ENSMMDG00005003983)	ncapd2 (ENSMMDG00005001584) #26
Cod	MODERN SPECIES	2	ENSGMOG00000015338	usp5 (ENSGMOG00000015359) #7	P3H3 (ENSGMOG00000015402) #10	gnb3a (ENSGMOG00000015457) #9	cdca3 (ENSGMOG00000036716) #8	pex5 (ENSGMOG00000015496)	ENSGMOG00000015526	lpcat3 (ENSGMOG00000015569)	tpi1b (ENSGMOG00000015591)	ENSGMOG00000015610	ENSGMOG00000025713	ENSGMOG00000015638	mlf2 (ENSGMOG00000015661) #15	cdc42l (ENSGMOG00000015685)	wnt4b (ENSGMOG00000015702)	ENSGMOG00000015722 #22	ptpn6 (ENSGMOG00000015780)	rbp5 (ENSGMOG00000015812)	ENSGMOG00000026565	ENSGMOG00000033939	c1r (ENSGMOG00000015841)	ENSGMOG00000032831	ENSGMOG00000006214	ENSGMOG00000006184	ENSGMOG00000006107	ENSGMOG00000006087	ENSGMOG00000006058	ENSGMOG00000005993	ENSGMOG00000022689	clk2b (ENSGMOG00000005932)	ENSGMOG00000005891
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT01100000263956	ENSGT00940000158852.c	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a.a.a	ENSGT00940000153675.a.a.a.a.b.l	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b.m.a	ENSGT00940000157473.b.b.m.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT01050000245031	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a
Northern pike	MODERN SPECIES	19	gsk3ab (ENSELUG00000018799)	ZNF526 (ENSELUG00000018737)	ENSELUG00000018666	ERF (ENSELUG00000000796)	ENSELUG00000034402	ENSELUG00000000792	dedd1 (ENSELUG00000018333)	ENSELUG00000031348	ENSELUG00000018273	ENSELUG00000018251	ENSELUG00000018234	ENO2 (ENSELUG00000000762)	mlf2 (ENSELUG00000018167) #15	cdc42l (ENSELUG00000018148)	wnt4b (ENSELUG00000018120)	CHD4 (ENSELUG00000018086) #22	ptpn6 (ENSELUG00000018008)	rbp5 (ENSELUG00000029027)	ENSELUG00000017977	ENSELUG00000017902	ENSELUG00000017961	ENSELUG00000032734	c1r (ENSELUG00000017805)	ENSELUG00000017787 #29	vamp1b (ENSELUG00000017767)	mrpl51 (ENSELUG00000017748) #27	ENSELUG00000000712	ENSELUG00000030078 #34	tnfrsf1a (ENSELUG00000001251) #33	ENSELUG00000017619 ##24	opn9 (ENSELUG00000017580)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	5	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a.c	ENSGT00390000008714.b.f	ENSGT00940000153615.b.b	ENSGT00950000182805.a.a.b.a.c.a.c.b	ENSGT00390000005023.a.r #15	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000153675.a.a.a.a.b.l.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b.i #22	ENSGT00940000159480.d.b	ENSGT00940000159480.d.a.a	ENSGT00940000165886.g	ENSGT00950000183126.b.a.u.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b.m.a	ENSGT00940000157473.b.b.m.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453.b #29	ENSGT00940000164382.b.b.c	ENSGT00390000018821.e #27	ENSGT00940000160453.a #29	ENSGT00940000164382.b.b.d	ENSGT00390000018821.f #27	ENSGT01050000245031
Salmoninae_a	ANCESTRAL SPECIES	91										ENSGT00940000153615.b.b	ENSGT00950000182805.a.a.b.a.c.a.c.b	ENSGT00390000005023.a.r #15	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000153675.a.a.a.a.b.l.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b.i #22	ENSGT00940000159480.d.b	ENSGT00940000159480.d.a.a	ENSGT00940000165886.g	ENSGT00950000183126.b.a.u.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b.m.a	ENSGT00940000157473.b.b.m.b.a	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453.b #29	ENSGT00940000164382.b.b.c	ENSGT00390000018821.e #27	ENSGT01050000245031	ENSGT00940000161250.f #34	ENSGT00940000159540.d.d #33	ENSGT00390000015492.A.b
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT01050000244848.B.b.e	ENSGT01000000216948	ENSGT01100000263479.G.q.b.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b.j.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708.o.a	ENSGT00520000055635.c.b.b.i.a	ENSGT00940000162624.d	ENSGT00940000159960.d.c	ENSGT00940000157292.fc.b.f	ENSGT00940000160115.a.a.d	ENSGT00940000153675.a.a.a.a.b.l.a.a	ENSGT00940000166118.d	ENSGT00940000155088.b.a.b.i.a #22	ENSGT00940000159480.d.a.b	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.a.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b.m.a	ENSGT00950000183084.b.a.a.a.f	ENSGT00940000157473.b.b.m.b.a	ENSGT00950000183084.b.a.a.a.e.b	ENSGT00940000160453.b #29	ENSGT00940000164382.b.b.c	ENSGT00390000018821.e #27	ENSGT01050000245031.f	ENSGT00940000161250.f.a #34	ENSGT00940000159540.d.d #33	ENSGT00510000046803.b.a.a.e.a.a ##24
Oncorhynchus_a	ANCESTRAL SPECIES	97	ENSGT01050000244848.B.a.b.f.b.b.c	ENSGT01050000244848.B.b.e	ENSGT01000000216948	ENSGT01100000263479.G.q.b.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b.j.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708.o.a	ENSGT00520000055635.c.b.b.i.a	ENSGT00940000162624.d	ENSGT00940000159960.d.c	ENSGT00940000157292.fc.b.f	ENSGT00940000153675.a.a.a.a.b.l.a.a	ENSGT00940000166118.d	ENSGT00940000155088.b.a.b.i.a #22	ENSGT00940000159480.d.a.b	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.a.a	ENSGT00950000183084.b.a.a.b	ENSGT00940000157473.b.b.m.a	ENSGT00950000183084.b.a.a.a.f	ENSGT00950000183084.b.a.a.a.e.b	ENSGT00940000160453.b #29	ENSGT00940000164382.b.b.c	ENSGT00940000167184	ENSGT01050000245031.f	ENSGT00940000161250.f.a #34	ENSGT00940000159540.d.d #33	ENSGT00510000046803.b.a.a.e.a.a ##24	ENSGT01100000263524.B.a.a.d
Coho salmon	MODERN SPECIES	4	ENSOKIG00005035452	ENSOKIG00005035461	ENSOKIG00005035481	ENSOKIG00005035487	ENSOKIG00005035499	dedd1 (ENSOKIG00005035511)	ENSOKIG00005035530	ENSOKIG00005035534	ENSOKIG00005035540	ENSOKIG00005035543	ENSOKIG00005035549	ENO2 (ENSOKIG00005035567)	mlf2 (ENSOKIG00005035660) #15	cdc42l (ENSOKIG00005035679)	wnt4b (ENSOKIG00005035743)	CHD4 (ENSOKIG00005036503) #22	ptpn6 (ENSOKIG00005046791)	ENSOKIG00005003853	ENSOKIG00005003864	ENSOKIG00005003871	ENSOKIG00005003874	ENSOKIG00005003898	ENSOKIG00005004025 #29	ENSOKIG00005004036	ENSOKIG00005004040	ENSOKIG00005004047	ENSOKIG00005004059 #34	tnfrsf1a (ENSOKIG00005004067) #33	IFFO1 (ENSOKIG00005004088) ##24	opn9 (ENSOKIG00005004102)	gapdh (ENSOKIG00005004231) #25
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000000232	ENSOMYG00000000215	ENSOMYG00000047948	ENSOMYG00000026370	ENSOMYG00000026376	ENSOMYG00000063403	dedd1 (ENSOMYG00000026332)	ENSOMYG00000072501	ENSOMYG00000026297	ENSOMYG00000026293	ENSOMYG00000069662	ENSOMYG00000056821	mlf2 (ENSOMYG00000026278) #15	cdc42l (ENSOMYG00000026263)	wnt4b (ENSOMYG00000026253)	ENSOMYG00000067950 #22	ptpn6 (ENSOMYG00000077381)	rbp5 (ENSOMYG00000066856)	ENSOMYG00000030358	ENSOMYG00000030336	ENSOMYG00000030265	c1r (ENSOMYG00000030195)	tapbpl (ENSOMYG00000030183) #29	ENSOMYG00000030178	ENSOMYG00000063022 #27	lag-3 (ENSOMYG00000029131)	tnfrsf1a (ENSOMYG00000030134) #33	ENSOMYG00000069319	ENSOMYG00000061898	ENSOMYG00000026223 ##24	opn9 (ENSOMYG00000026218)
Oncorhynchus	ANCESTRAL SPECIES	53	ENSGT00940000160262.i.c	ENSGT01030000234583.a.a.c.a.a.t.b	ENSGT01050000244848.B.a.b.f.b.b.d	ENSGT01050000244848.B.b.f	ENSGT00940000163576.l	ENSGT00950000183199.a.b.b	ENSGT00940000158852.c.a	ENSGT00940000166708.o.b	ENSGT00520000055635.c.b.b.j	ENSGT00940000162624.c	ENSGT00940000159960.d.d	ENSGT00940000157292.fc.b.e	ENSGT00940000160115.a.a.c.a.a	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000166118.c	ENSGT00940000155088.b.a.b.i.b #22	ENSGT00940000159480.d.b	ENSGT00940000159480.d.a.a.a	ENSGT00940000165886.g	ENSGT00950000183126.b.a.u.a.b	ENSGT00950000183084.b.a.a.a.e.a	ENSGT00940000160453.a #29	ENSGT00940000164382.b.b.d	ENSGT00390000018821.f #27	ENSGT01050000245031.e	ENSGT00940000161250.f.b #34	ENSGT00940000159540.d.c #33	ENSGT00510000046803.b.a.a.e.a.b ##24	ENSGT01100000263524.B.a.a.c	ENSGT00940000153298.i.a #25	ENSGT00390000015492.A.a
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000000406	ENSOMYG00000000394	ENSOMYG00000064903	ENSOMYG00000026354	ENSOMYG00000065080	dedd1 (ENSOMYG00000000169)	ENSOMYG00000000110	ENSOMYG00000000101	ENSOMYG00000000092	ENSOMYG00000054487	ENSOMYG00000030048	mlf2 (ENSOMYG00000030031) #15	cdc42l (ENSOMYG00000029993)	wnt4b (ENSOMYG00000029974)	ENSOMYG00000029025	ENSOMYG00000029877 #22	ENSOMYG00000029836	ptpn6 (ENSOMYG00000062402)	rbp5 (ENSOMYG00000029259)	ENSOMYG00000062218	tnfr (ENSOMYG00000029243)	c1r (ENSOMYG00000029228)	ENSOMYG00000029193 #29	ENSOMYG00000029160	MRPL51 (ENSOMYG00000029144) #27	ENSOMYG00000030160	ENSOMYG00000029108 #34	TNFR1b (ENSOMYG00000029089) #33	ENSOMYG00000070662	ENSOMYG00000065625	ENSOMYG00000029000 ##24
Oncorhynchus_a	ANCESTRAL SPECIES	93				ENSGT01100000263479.H.c.b.j.b.a	ENSGT01100000263479.H.c.b.i.b	ENSGT01100000263956	ENSGT00940000165364.b.a	ENSGT00940000158852.c.a	ENSGT00940000166708.o.b	ENSGT00520000055635.c.b.b.j	ENSGT00940000162624.c	ENSGT00940000159960.d.d	ENSGT00390000005023.a.q.a #15	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000166118.c	ENSGT00940000155088.b.a.b.i.b #22	ENSGT00940000159480.d.b	ENSGT00940000159480.d.a.a.a	ENSGT00940000165886.g	ENSGT00950000183126.b.a.u.a.b	ENSGT00950000183084.b.a.a.a.e.a	ENSGT00940000160453.a #29	ENSGT00940000164382.b.b.d	ENSGT00390000018821.f #27	ENSGT01050000245031.e	ENSGT00940000161250.f.b #34	ENSGT00940000159540.d.c #33	ENSGT00510000046803.b.a.a.e.a.b ##24	ENSGT01100000263524.B.a.a.c	ENSGT00940000153298.i.a.d #25	ENSGT00390000015492.A.a
Coho salmon	MODERN SPECIES	11	ENSOKIG00005000028	ENSOKIG00005000016	ENSOKIG00005025573	ERF (ENSOKIG00005025554)	POU2F2 (ENSOKIG00005025518)	dedd1 (ENSOKIG00005025504)	ENSOKIG00005025500	ENSOKIG00005025469	ENSOKIG00005025453	ENSOKIG00005025439	ENO2 (ENSOKIG00005025306)	mlf2 (ENSOKIG00005025264) #15	cdc42l (ENSOKIG00005025196)	wnt4b (ENSOKIG00005025084)	ENSOKIG00005025067	CHD4 (ENSOKIG00005020351) #22	ptpn6 (ENSOKIG00005019829)	rbp5 (ENSOKIG00005019774)	ENSOKIG00005019758	ENSOKIG00005019753	ENSOKIG00005019739	ENSOKIG00005019724	mrpl51 (ENSOKIG00005019717) #27	ENSOKIG00005019701	ENSOKIG00005019691 #34	tnfrsf1a (ENSOKIG00005019675) #33	IFFO1 (ENSOKIG00005019650) ##24	opn9 (ENSOKIG00005019619)	gapdh (ENSOKIG00005019546) #25	nppcl (ENSOKIG00005019522)	ncapd2 (ENSOKIG00005019394) #26
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.b.j.a.a #22
Huchen	MODERN SPECIES	2519					dedd1 (ENSHHUG00000045075)	ENSHHUG00000045066	ENSHHUG00000045065	ENSHHUG00000045063	ENSHHUG00000045058	ENSHHUG00000045055	ENSHHUG00000045054	ENSHHUG00000045052	mlf2 (ENSHHUG00000045042) #15	cdc42l (ENSHHUG00000044937)	wnt4b (ENSHHUG00000044929)	ENSHHUG00000044906 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.b.j.a.a #22
Salmo	ANCESTRAL SPECIES	57	ENSGT00940000159960.d.b	ENSGT00940000157292.fc.b.c	ENSGT00940000160115.a.a.d	ENSGT00390000008714.b.e.a.b	ENSGT00980000198710.e.b.a.a.b.b.b	ENSGT00940000153615.b.b	ENSGT00950000182805.a.a.b.a.c.a.c.b	ENSGT00390000005023.a.r #15	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000166118.f	ENSGT00940000155088.b.a.b.j.a.b #22	ENSGT00950000182805.a.a.b.a.c.a.c.a	ENSGT00390000005023.a.q #15	ENSGT00940000153675.a.a.a.a.b.l.a	ENSGT00940000166118.e	ENSGT00940000155088.b.a.b.j.a.a #22	ENSGT00940000159480.c.b	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.b	ENSGT00940000157473.b.b.m.a.a	ENSGT00950000183084.b.a.a.a.c	ENSGT00940000160453.a #29	ENSGT00940000164382.b.b.d	ENSGT00390000018821.f #27	ENSGT01050000245031.c	ENSGT00940000161250.e #34	ENSGT00940000159540.d.c #33	ENSGT00510000046803.b.a.a.f.b ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a.h #25	ENSGT00390000015492.A.a
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000091877	ENSSSAG00000087967	ENSSSAG00000083743	ENSSSAG00000059145	dedd2 (ENSSSAG00000003442)	ENSSSAG00000099931	ENSSSAG00000059350	ENSSSAG00000059358	ENSSSAG00000116781	ENSSSAG00000110649	ENSSSAG00000059449	mlf2 (ENSSSAG00000099573) #15	CDC42 (ENSSSAG00000106298)	wnt4b (ENSSSAG00000061388)	ENSSSAG00000094205	ENSSSAG00000093791 #22	ptpn6 (ENSSSAG00000039390)	rbp5 (ENSSSAG00000116434)	ENSSSAG00000101489	ENSSSAG00000002963	ENSSSAG00000046468	ENSSSAG00000046397 #29	ENSSSAG00000082903	mrpl51 (ENSSSAG00000046358) #27	ENSSSAG00000003335	ENSSSAG00000051391 #34	ENSSSAG00000105430	tnfrsf1a (ENSSSAG00000051406) #33	ENSSSAG00000083434 ##24	opn9 (ENSSSAG00000044705)	gapdh (ENSSSAG00000099398) #25
Salmoninae	ANCESTRAL SPECIES	1198																ENSGT00940000155088.b.a.b.j.a.b #22	ENSGT00940000159480.c	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.b
Salmoninae_a	ANCESTRAL SPECIES	305																ENSGT00940000155088.b.a.b.j.a.b #22	ENSGT00940000159480.c	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.b
Salmo	ANCESTRAL SPECIES	57	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708.q.a	ENSGT00520000055635.c.b.b.g	ENSGT00940000162624.d	ENSGT00940000159960.d.b	ENSGT00940000157292.fc.b.c	ENSGT00940000160115.a.a.d	ENSGT00390000008714.b.e.a.b	ENSGT00980000198710.e.b.a.a.b.b.b	ENSGT00940000153615.b.b	ENSGT00950000182805.a.a.b.a.c.a.c.b	ENSGT00390000005023.a.r #15	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000166118.f	ENSGT00940000155088.b.a.b.j.a.b #22	ENSGT00950000182805.a.a.b.a.c.a.c.a	ENSGT00390000005023.a.q #15	ENSGT00940000153675.a.a.a.a.b.l.a	ENSGT00940000166118.e	ENSGT00940000155088.b.a.b.j.a.a #22	ENSGT00940000159480.c.b	ENSGT00940000165886.h	ENSGT00950000183126.b.a.u.b	ENSGT00940000157473.b.b.m.a.a	ENSGT00950000183084.b.a.a.a.c	ENSGT00940000160453.a #29	ENSGT00940000164382.b.b.d	ENSGT00390000018821.f #27	ENSGT01050000245031.c	ENSGT00940000161250.e #34
River trout	MODERN SPECIES	22	esrp1 (ENSSTUG00000047890)	VIRMA (ENSSTUG00000047978)	ENSSTUG00000048662	RAD54B (ENSSTUG00000048669)	FSBP (ENSSTUG00000048672)	ENSSTUG00000048676	s100t (ENSSTUG00000048680)	CHRNB2 (ENSSTUG00000048683)	s100t (ENSSTUG00000048689)	ENSSTUG00000048693	ENO2 (ENSSTUG00000048699)	ENSSTUG00000048741	mlf2 (ENSSTUG00000048745) #15	cdc42l (ENSSTUG00000048756)	wnt4b (ENSSTUG00000048763)	CHD4 (ENSSTUG00000048806) #22	ptpn6 (ENSSTUG00000049558)	rbp5 (ENSSTUG00000049591)	ENSSTUG00000049594	ENSSTUG00000049596	ENSSTUG00000049598	ENSSTUG00000049599	c1r (ENSSTUG00000049601)	ENSSTUG00000049614 #29	vamp1b (ENSSTUG00000049615)	mrpl51 (ENSSTUG00000049618) #27	ENSSTUG00000049622	ENSSTUG00000049626 #34	tnfrsf1a (ENSSTUG00000049628) #33	IFFO1 (ENSSTUG00000049632) ##24	opn9 (ENSSTUG00000049638)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000051319	ENSSSAG00000003798	ENSSSAG00000057062	znf574 (ENSSSAG00000003807)	gsk3ab (ENSSSAG00000058347)	ZNF526 (ENSSSAG00000114243)	ENSSSAG00000107687	ENSSSAG00000059116	ENSSSAG00000115246	ENSSSAG00000097009	dedd1 (ENSSSAG00000059305)	ENSSSAG00000087244	ENSSSAG00000114829	ENSSSAG00000003430	ENSSSAG00000100792	ENSSSAG00000062647 #22	ptpn6 (ENSSSAG00000071957)	rbp5 (ENSSSAG00000074455)	ENSSSAG00000117865	ENSSSAG00000003871	ENSSSAG00000052027	ENSSSAG00000003825	c1r (ENSSSAG00000074469)	ENSSSAG00000074481	tapbpl (ENSSSAG00000074475) #29	ENSSSAG00000113607 #27	ENSSSAG00000003882	ENSSSAG00000074493 #34	tnr1a (ENSSSAG00000074496) #33	ENSSSAG00000074511 ##24	gapdh (ENSSSAG00000042521) #25
Huchen	MODERN SPECIES	1143							dedd1 (ENSHHUG00000030060)	ENSHHUG00000030047	ENSHHUG00000030045	ENSHHUG00000030042	ENSHHUG00000030036	ENO2 (ENSHHUG00000029736)	mlf2 (ENSHHUG00000029725) #15	cdc42l (ENSHHUG00000029353)	wnt4b (ENSHHUG00000029348)	ENSHHUG00000027344 #22	ptpn6 (ENSHHUG00000026954)	rbp5 (ENSHHUG00000026928)	ENSHHUG00000026915	ENSHHUG00000026910	ENSHHUG00000026891	ENSHHUG00000026880	ENSHHUG00000026848	ENSHHUG00000026831 #29	vamp1b (ENSHHUG00000026823)	ENSHHUG00000026813	ENSHHUG00000026801	ENSHHUG00000026790	ENSHHUG00000026775 #34	ENSHHUG00000026755 #33
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155088.b.a.b.j.b #22
Huchen	MODERN SPECIES	11416																ENSHHUG00000015487 #22
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00390000001745.a #12	ENSGT00510000054197	ENSGT00940000156036 #7	ENSGT00940000159164 #10	ENSGT01000000214413.b.a.b.a.a #9	ENSGT00390000017343 #8	ENSGT00940000156605	ENSGT00950000183086.a.b	ENSGT01030000234564.b	ENSGT00390000013354.b.a	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a	ENSGT00390000005023.a #15	ENSGT00940000153675.a.a.a.a	ENSGT00940000166118	ENSGT00940000155088.b.a.b #22	ENSGT00940000159480	ENSGT00940000165886	ENSGT00950000183126.b.a.c.a	ENSGT00950000183084.b.a.a.b	ENSGT00950000183084.b.a.a.a	ENSGT00940000160453 #29	ENSGT00940000164382.b.b	ENSGT00390000018821 #27	ENSGT01050000245031	ENSGT00940000161250 #34	ENSGT00940000159540.d #33	ENSGT00950000183126.b.a.c.b	ENSGT00510000046803.b.a.a ##24	ENSGT01100000263524.B.a.a	ENSGT00940000153298.i.a #25
P. kingsleyae	MODERN SPECIES	512			usp5 (ENSPKIG00000009378) #7	ENSPKIG00000009290 #10	gnb3a (ENSPKIG00000009251) #9	ENSPKIG00000009213	pex5 (ENSPKIG00000009099)	CLSTN3 (ENSPKIG00000009002)	lpcat3 (ENSPKIG00000008908)	tpi1b (ENSPKIG00000008843)	ENSPKIG00000008809	eno2 (ENSPKIG00000008754)	mlf2 (ENSPKIG00000008704) #15	cdc42l (ENSPKIG00000008673)	wnt4b (ENSPKIG00000008637)	CHD4 (ENSPKIG00000008268) #22	ptpn6 (ENSPKIG00000008036)	rbp5 (ENSPKIG00000007996)	ENSPKIG00000007959	ENSPKIG00000007923	c1r (ENSPKIG00000007866)	ENSPKIG00000007806 #29
Asian bonytongue	MODERN SPECIES	9	cd4-1 (ENSSFOG00015013778) #12	ENSSFOG00015013738	usp5 (ENSSFOG00015013648) #7	P3H3 (ENSSFOG00015013557) #10	gnb3a (ENSSFOG00015013513) #9	cdca3 (ENSSFOG00015013500) #8	pex5 (ENSSFOG00015013463)	CLSTN3 (ENSSFOG00015013418)	lpcat3 (ENSSFOG00015013390)	tpi1b (ENSSFOG00015013354)	ENSSFOG00015013303	eno2 (ENSSFOG00015013271)	mlf2 (ENSSFOG00015013255) #15	cdc42l (ENSSFOG00015025651)	wnt4b (ENSSFOG00015013205)	CHD4 (ENSSFOG00015002908) #22	ptpn6 (ENSSFOG00015002824)	rbp5 (ENSSFOG00015031066)	ENSSFOG00015032958	ENSSFOG00015002777	c1r (ENSSFOG00015002767)	ENSSFOG00015002753 #29	vamp1b (ENSSFOG00015027800)	mrpl51 (ENSSFOG00015002742) #27	ENSSFOG00015002737	ENSSFOG00015002720 #34	tnfrsf1a (ENSSFOG00015026646) #33	IFFO1 (ENSSFOG00015031111) ##24	opn9 (ENSSFOG00015002653)	gapdh (ENSSFOG00015002639) #25	nppcl (ENSSFOG00015028383)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155088.b.b #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155088.b.b #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155088.b.b #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000155088.b.b #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155088.b.b #22
Huchen	MODERN SPECIES	7095																ENSHHUG00000011854 #22	ptpn6 (ENSHHUG00000011836)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Hagfish	MODERN SPECIES	779																ENSEBUG00000012670 #22	ENSEBUG00000016673 #9	actl6a (ENSEBUG00000010944)	ENSEBUG00000006784	ENSEBUG00000013973
Ciona	ANCESTRAL SPECIES																	ENSGT00940000155088 #22
Ciona savignyi	MODERN SPECIES	47			ENSCSAVG00000005488	ENSCSAVG00000005487	ENSCSAVG00000005168	ENSCSAVG00000005166	ENSCSAVG00000005164	ENSCSAVG00000005163	ENSCSAVG00000005162	ENSCSAVG00000005161	ENSCSAVG00000005160	ENSCSAVG00000005159	ENSCSAVG00000005139	ENSCSAVG00000005130	ENSCSAVG00000005124	ENSCSAVG00000004448 #22	ENSCSAVG00000004371	ENSCSAVG00000004353	ENSCSAVG00000004310	ENSCSAVG00000004272	ENSCSAVG00000004218	ENSCSAVG00000004216	ENSCSAVG00000004211	ENSCSAVG00000004206	ENSCSAVG00000003771	ENSCSAVG00000003764	ENSCSAVG00000003745	ENSCSAVG00000003731	ENSCSAVG00000003564	ENSCSAVG00000003502	ENSCSAVG00000003385
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000023904	ENSCING00000023654	ENSCING00000022192	ENSCING00000007298	ENSCING00000019477	ENSCING00000007304	ENSCING00000007301	ENSCING00000018740	ENSCING00000023747	ENSCING00000007326	ENSCING00000007322	ENSCING00000007367	ENSCING00000007356	ENSCING00000025107	ENSCING00000007349	ENSCING00000021325 #22	ENSCING00000013198	ENSCING00000022412	ENSCING00000013199	ENSCING00000016834	ENSCING00000016831	ENSCING00000013197	ENSCING00000013196	ENSCING00000007369	ENSCING00000007376	ENSCING00000007375	ENSCING00000020590	ENSCING00000007370	ENSCING00000009878	ENSCING00000018090	ENSCING00000024897