Murinae	ANCESTRAL SPECIES	4	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT01100000267007	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #32	ENSGT00940000160952 #33	ENSGT00940000159540 #34	ENSGT00940000161250 #35	ENSGT00940000155083.b #36	ENSGT00940000155810 #37	ENSGT00940000155840.C
Mus	ANCESTRAL SPECIES	12	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #32	ENSGT00940000160952 #33	ENSGT00940000159540 #34	ENSGT00940000161250 #35	ENSGT00940000155083.b #36	ENSGT00940000155810 #37	ENSGT00940000155840.C
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156036 #7	ENSGT00390000017343 #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904 #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00940000162178 #32	ENSGT00940000160952 #33	ENSGT00940000159540 #34	ENSGT00940000161250 #35	ENSGT00940000155083.b #36	ENSGT00940000155810 #37	ENSGT00940000155840.C
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000156036 #7	ENSGT00390000017343.g #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105 #14	ENSGT00390000005023.a #15	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904.e.a #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a.b.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00950000182825.B #31	ENSGT00940000162178 #32	ENSGT00940000160952 #33	ENSGT00940000159540 #34	ENSGT00940000161250 #35	ENSGT00940000155083.b #36	ENSGT00940000155810 #37
Mouse	MODERN SPECIES	15	Usp5 (ENSMUSG00000038429) #7	Cdca3 (ENSMUSG00000023505) #8	Gnb3 (ENSMUSG00000023439) #9	P3h3 (ENSMUSG00000023191) #10	Gpr162 (ENSMUSG00000038390) #11	Cd4 (ENSMUSG00000023274) #12	Lag3 (ENSMUSG00000030124) #13	Ptms (ENSMUSG00000030122) #14	Mlf2 (ENSMUSG00000030120) #15	Cops7a (ENSMUSG00000030127) #16	Pianp (ENSMUSG00000030329) #17	Zfp384 (ENSMUSG00000038346) #18	Ing4 (ENSMUSG00000030330) #19	Acrbp (ENSMUSG00000072770) #20	Lpar5 (ENSMUSG00000067714) #21	Chd4 (ENSMUSG00000063870) #22	Nop2 (ENSMUSG00000038279) #23	Iffo1 (ENSMUSG00000038271) #24	Gapdh (ENSMUSG00000057666) #25	Ncapd2 (ENSMUSG00000038252) #26	Mrpl51 (ENSMUSG00000030335) #27	Vamp1 (ENSMUSG00000030337) #28	Tapbpl (ENSMUSG00000038213) #29	Cd27 (ENSMUSG00000030336) #30	Tuba3a (ENSMUSG00000067702) #31	Ltbr (ENSMUSG00000030339) #32	Scnn1a (ENSMUSG00000030340) #33	Tnfrsf1a (ENSMUSG00000030341) #34	Plekhg6 (ENSMUSG00000038167) #35	Cd9 (ENSMUSG00000030342) #36	Vwf (ENSMUSG00000001930) #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000156036 #7	ENSGT00390000017343.g #8	ENSGT01000000214413.b.a.b.a #9	ENSGT00940000159164 #10	ENSGT00390000017213.A #11	ENSGT00390000001745 #12	ENSGT01090000259985.b.b.b.a.a.a #13	ENSGT01100000264105 #14	ENSGT00940000168330	ENSGT00940000159873 #16	ENSGT00510000049460 #17	ENSGT00940000156904.e.a #18	ENSGT00940000159033 #19	ENSGT00390000000826 #20	ENSGT00950000183136.b.b #21	ENSGT00940000155088 #22	ENSGT00940000161554 #23	ENSGT00510000046803.b.b #24	ENSGT00940000153298.m.b.a.a.b.a.a.a.b.a.b #25	ENSGT00940000153566.a #26	ENSGT00390000018821 #27	ENSGT00940000161390 #28	ENSGT00940000160453 #29	ENSGT00510000049297 #30	ENSGT00950000182825.B #31	ENSGT00940000162178 #32	ENSGT00940000160952 #33	ENSGT00940000159540 #34	ENSGT00940000161250 #35	ENSGT00940000155083.b #36	ENSGT00940000155810 #37
spretus	MODERN SPECIES	15	Usp5 (MGP_SPRETEiJ_G0029896) #7	Cdca3 (MGP_SPRETEiJ_G0029897) #8	Gnb3 (MGP_SPRETEiJ_G0029898) #9	P3h3 (MGP_SPRETEiJ_G0029899) #10	Gpr162 (MGP_SPRETEiJ_G0029900) #11	Cd4 (MGP_SPRETEiJ_G0029901) #12	Lag3 (MGP_SPRETEiJ_G0029902) #13	MGP_SPRETEiJ_G0029903 #14	MGP_SPRETEiJ_G0029904	Cops7a (MGP_SPRETEiJ_G0029905) #16	Pianp (MGP_SPRETEiJ_G0029906) #17	MGP_SPRETEiJ_G0029907 ##18	Ing4 (MGP_SPRETEiJ_G0029908) #19	Acrbp (MGP_SPRETEiJ_G0029909) #20	Lpar5 (MGP_SPRETEiJ_G0029910) #21	Chd4 (MGP_SPRETEiJ_G0029911) #22	MGP_SPRETEiJ_G0029912	Iffo1 (MGP_SPRETEiJ_G0029913) #24	Ncapd2 (MGP_SPRETEiJ_G0029915) #26	Mrpl51 (MGP_SPRETEiJ_G0029916) #27	Vamp1 (MGP_SPRETEiJ_G0029917) #28	Tapbpl (MGP_SPRETEiJ_G0029918) #29	Cd27 (MGP_SPRETEiJ_G0029919) #30	MGP_SPRETEiJ_G0029920 #31	Ltbr (MGP_SPRETEiJ_G0029921) #32	Scnn1a (MGP_SPRETEiJ_G0029922) #33	Tnfrsf1a (MGP_SPRETEiJ_G0029923) #34	Plekhg6 (MGP_SPRETEiJ_G0029924) #35	Cd9 (MGP_SPRETEiJ_G0029925) #36	Vwf (MGP_SPRETEiJ_G0029926) #37	Ano2 (MGP_SPRETEiJ_G0029927)
Steppe mouse	MODERN SPECIES	2453										Cops7a (ENSMSIG00000005376) #16	Pianp (ENSMSIG00000005454) #17	Zfp384 (ENSMSIG00000005490) #18	Ing4 (ENSMSIG00000005976) #19	Acrbp (ENSMSIG00000006066) #20	Lpar5 (ENSMSIG00000006314) #21	Chd4 (ENSMSIG00000006341) #22	Nop2 (ENSMSIG00000006620) #23	Iffo1 (ENSMSIG00000006668) #24	ENSMSIG00000006759 #25	Ncapd2 (ENSMSIG00000006811) #26	Mrpl51 (ENSMSIG00000006876) #27	Vamp1 (ENSMSIG00000006906) #28	Tapbpl (ENSMSIG00000006978) #29	Cd27 (ENSMSIG00000007002) #30	ENSMSIG00000007122 #31	Ltbr (ENSMSIG00000007137) #32	Scnn1a (ENSMSIG00000007175) #33	Tnfrsf1a (ENSMSIG00000007222) #34	Plekhg6 (ENSMSIG00000007258) #35
Ryukyu mouse	MODERN SPECIES	15	Tpi1 (MGP_CAROLIEiJ_G0028853)	Usp5 (MGP_CAROLIEiJ_G0028854) #7	Cdca3 (MGP_CAROLIEiJ_G0028855) #8	Gnb3 (MGP_CAROLIEiJ_G0028856) #9	Gpr162 (MGP_CAROLIEiJ_G0028858) #11	Cd4 (MGP_CAROLIEiJ_G0028859) #12	MGP_CAROLIEiJ_G0028860 #13	MGP_CAROLIEiJ_G0028861 #14	MGP_CAROLIEiJ_G0028862	Cops7a (MGP_CAROLIEiJ_G0028863) #16	Pianp (MGP_CAROLIEiJ_G0028864) #17	Zfp384 (MGP_CAROLIEiJ_G0028865) #18	Ing4 (MGP_CAROLIEiJ_G0028866) #19	MGP_CAROLIEiJ_G0028867 #20	Lpar5 (MGP_CAROLIEiJ_G0028868) #21	MGP_CAROLIEiJ_G0028869 #22	Iffo1 (MGP_CAROLIEiJ_G0028870) #24	MGP_CAROLIEiJ_G0028872	MGP_CAROLIEiJ_G0028874 #28	Tapbpl (MGP_CAROLIEiJ_G0028875) #29	Cd27 (MGP_CAROLIEiJ_G0028876) #30	MGP_CAROLIEiJ_G0028877 #31	MGP_CAROLIEiJ_G0028878 #32	Scnn1a (MGP_CAROLIEiJ_G0028879) #33	Tnfrsf1a (MGP_CAROLIEiJ_G0028880) #34	MGP_CAROLIEiJ_G0028881 #36	MGP_CAROLIEiJ_G0028882 #37	MGP_CAROLIEiJ_G0028883	Ntf3 (MGP_CAROLIEiJ_G0028884)	Kcna5 (MGP_CAROLIEiJ_G0028885)	Kcna1 (MGP_CAROLIEiJ_G0028886)
Shrew mouse	MODERN SPECIES	11	Usp5 (MGP_PahariEiJ_G0022614) #7	Cdca3 (MGP_PahariEiJ_G0022615) #8	Gnb3 (MGP_PahariEiJ_G0022616) #9	P3h3 (MGP_PahariEiJ_G0022617) #10	Gpr162 (MGP_PahariEiJ_G0022618) #11	MGP_PahariEiJ_G0022619 #12	Lag3 (MGP_PahariEiJ_G0022620) #13	MGP_PahariEiJ_G0022621 #14	MGP_PahariEiJ_G0022622	Cops7a (MGP_PahariEiJ_G0022623) #16	Pianp (MGP_PahariEiJ_G0022624) #17	Zfp384 (MGP_PahariEiJ_G0022625) #18	Ing4 (MGP_PahariEiJ_G0022626) #19	Acrbp (MGP_PahariEiJ_G0022627) #20	Lpar5 (MGP_PahariEiJ_G0022628) #21	Chd4 (MGP_PahariEiJ_G0022629) #22	MGP_PahariEiJ_G0022630	Iffo1 (MGP_PahariEiJ_G0022631) #24	MGP_PahariEiJ_G0022632 ##25	Ncapd2 (MGP_PahariEiJ_G0022633) #26	Mrpl51 (MGP_PahariEiJ_G0022634) #27	Vamp1 (MGP_PahariEiJ_G0022635) #28	Tapbpl (MGP_PahariEiJ_G0022636) #29	Cd27 (MGP_PahariEiJ_G0022637) #30	Ltbr (MGP_PahariEiJ_G0022638) #32	Scnn1a (MGP_PahariEiJ_G0022639) #33	Tnfrsf1a (MGP_PahariEiJ_G0022640) #34	Plekhg6 (MGP_PahariEiJ_G0022641) #35	Cd9 (MGP_PahariEiJ_G0022642) #36	Vwf (MGP_PahariEiJ_G0022643) #37	Ano2 (MGP_PahariEiJ_G0022644)
Rat	MODERN SPECIES	14	Gnb3 (ENSRNOG00000015541) #9	P3h3 (ENSRNOG00000071218) #10	Gpr162 (ENSRNOG00000016143) #11	ENSRNOG00000071219 #12	Lag3 (ENSRNOG00000021334) #13	Ptms (ENSRNOG00000060098) #14	AC115420.4 (ENSRNOG00000060308)	Mlf2 (ENSRNOG00000016589) #15	Cops7a (ENSRNOG00000016778) #16	Pianp (ENSRNOG00000017052) #17	Zfp384 (ENSRNOG00000017066) #18	ENSRNOG00000066393	Acrbp (ENSRNOG00000017399) #20	Ing4 (ENSRNOG00000023363) #19	Lpar5 (ENSRNOG00000021401) #21	Chd4 (ENSRNOG00000018309) #22	Nop2 (ENSRNOG00000018453) #23	Iffo1 (ENSRNOG00000018533) #24	LOC108351137 (ENSRNOG00000018630) #25	Ncapd2 (ENSRNOG00000055300) #26	Mrpl51 (ENSRNOG00000019165) #27	Vamp1 (ENSRNOG00000019219) #28	Cd27 (ENSRNOG00000027466) #30	Tuba3b (ENSRNOG00000031707) #31	Ltbr (ENSRNOG00000019264) #32	Scnn1a (ENSRNOG00000019368) #33	Tnfrsf1a (ENSRNOG00000031312) #34	Plekhg6 (ENSRNOG00000019528) #35	ENSRNOG00000064217	Cd9 (ENSRNOG00000019556) #36	Vwf (ENSRNOG00000019689) #37