Rodentia	ANCESTRAL SPECIES	14	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Muroidea	ANCESTRAL SPECIES	34	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Prairie vole	MODERN SPECIES	12	Arl6ip6 (ENSMOCG00000016947) #7	Rprm (ENSMOCG00000002172) #8	Galnt13 (ENSMOCG00000014596) #9	Kcnj3 (ENSMOCG00000020988) #10	Nr4a2 (ENSMOCG00000004312) #11	Gpd2 (ENSMOCG00000022538) #12	Galnt5 (ENSMOCG00000018686) #13	Ermn (ENSMOCG00000022625) #14	Cytip (ENSMOCG00000016003) #15	Acvr1c (ENSMOCG00000021159) #16	Acvr1 (ENSMOCG00000014737) #17	Upp2 (ENSMOCG00000013921) #18	Ccdc148 (ENSMOCG00000003566) #19	ENSMOCG00000005550 #20	Pkp4 (ENSMOCG00000015021) #21	Dapl1 (ENSMOCG00000022472) #22	Tanc1 (ENSMOCG00000008681) #23	Wdsub1 (ENSMOCG00000021664) #24	Baz2b (ENSMOCG00000004160) #25	Marchf7 (ENSMOCG00000005095) #26	Cd302 (ENSMOCG00000020178) #27	Ly75 (ENSMOCG00000008357) #28	Pla2r1 (ENSMOCG00000021985) #29	Itgb6 (ENSMOCG00000012752) #30	Rbms1 (ENSMOCG00000022617) #31	Tank (ENSMOCG00000013143) #32	Psmd14 (ENSMOCG00000003211) #33	Tbr1 (ENSMOCG00000012850) #34	Slc4a10 (ENSMOCG00000022435) #35	Dpp4 (ENSMOCG00000016136) #36	Gcg (ENSMOCG00000019970) #37
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000012843	Kcnj3 (ENSPEMG00000015278) #10	ENSPEMG00000027901	Nr4a2 (ENSPEMG00000000011) #11	ENSPEMG00000027857	Gpd2 (ENSPEMG00000020267) #12	Galnt5 (ENSPEMG00000020201) #13	Ermn (ENSPEMG00000026555) #14	Cytip (ENSPEMG00000010824) #15	Acvr1c (ENSPEMG00000008762) #16	Acvr1 (ENSPEMG00000008567) #17	ENSPEMG00000029209	Upp2 (ENSPEMG00000004188) #18	Ccdc148 (ENSPEMG00000016298) #19	Pkp4 (ENSPEMG00000015348) #21	Dapl1 (ENSPEMG00000016737) #22	ENSPEMG00000008774	ENSPEMG00000024402	Tanc1 (ENSPEMG00000006898) #23	Wdsub1 (ENSPEMG00000013163) #24	Baz2b (ENSPEMG00000011049) #25	Marchf7 (ENSPEMG00000006700) #26	Cd302 (ENSPEMG00000000451) #27	Ly75 (ENSPEMG00000010620) #28	ENSPEMG00000024950	Pla2r1 (ENSPEMG00000015985) #29	Itgb6 (ENSPEMG00000013549) #30	Rbms1 (ENSPEMG00000009449) #31	Tank (ENSPEMG00000010049) #32	Psmd14 (ENSPEMG00000017794) #33	Tbr1 (ENSPEMG00000008515) #34
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	188	Prpf40a (ENSCGRG00001022526)	Arl6ip6 (ENSCGRG00001021408) #7	Rprm (ENSCGRG00001009462) #8	Galnt13 (ENSCGRG00001004190) #9	Kcnj3 (ENSCGRG00001000982) #10	Nr4a2 (ENSCGRG00001001426) #11	Gpd2 (ENSCGRG00001024452) #12	Galnt5 (ENSCGRG00001004718) #13	Ermn (ENSCGRG00001016956) #14	Cytip (ENSCGRG00001024713) #15	Acvr1c (ENSCGRG00001023713) #16	Acvr1 (ENSCGRG00001023684) #17	Upp2 (ENSCGRG00001011463) #18	Ccdc148 (ENSCGRG00001023650) #19	Pkp4 (ENSCGRG00001024825) #21	ENSCGRG00001008878 #22	Tanc1 (ENSCGRG00001015684) #23	Baz2b (ENSCGRG00001011640) #25	Marchf7 (ENSCGRG00001024547) #26	Cd302 (ENSCGRG00001000797) #27	Ly75 (ENSCGRG00001024055) #28	Pla2r1 (ENSCGRG00001024467) #29	Itgb6 (ENSCGRG00001024381) #30	Rbms1 (ENSCGRG00001022833) #31	ENSCGRG00001023161 #32	Psmd14 (ENSCGRG00001019908) #33	Tbr1 (ENSCGRG00001020937) #34	Slc4a10 (ENSCGRG00001019294) #35	Dpp4 (ENSCGRG00001011282) #36	Gcg (ENSCGRG00001024834) #37	Fap (ENSCGRG00001017183)
Chinese hamster chok1gshd	MODERN SPECIES	188	Fkbp7 (ENSCGRG00001004871)	Pjvk (ENSCGRG00001006219)	Prkra (ENSCGRG00001009200)	Osbpl6 (ENSCGRG00001002669)	Rbm45 (ENSCGRG00001005759)	Cyct (ENSCGRG00001008096)	Pde11a (ENSCGRG00001011422)	ENSCGRG00001003072	Ttc30a1 (ENSCGRG00001000892)	Ttc30b (ENSCGRG00001002157)	Agps (ENSCGRG00001003863)	Nfe2l2 (ENSCGRG00001005715)	ENSCGRG00001008592	ENSCGRG00001003235	Mtx2 (ENSCGRG00001014247)	ENSCGRG00001014512 #22	Hoxd1 (ENSCGRG00001011572)	Hoxd3 (ENSCGRG00001011863)	Hoxd4 (ENSCGRG00001012360)	Hoxd8 (ENSCGRG00001013130)	Hoxd9 (ENSCGRG00001005991)	Hoxd10 (ENSCGRG00001008302)	Hoxd11 (ENSCGRG00001010386)	Hoxd12 (ENSCGRG00001000877)	Hoxd13 (ENSCGRG00001001661)	Evx2 (ENSCGRG00001003649)	ENSCGRG00001006802	Lnpk (ENSCGRG00001011515)	Atp5g3 (ENSCGRG00001012041)	Atf2 (ENSCGRG00001015584)	Chn1 (ENSCGRG00001019152)
Golden Hamster	MODERN SPECIES	633	Fmnl2 (ENSMAUG00000013048)	Prpf40a (ENSMAUG00000020074)	Arl6ip6 (ENSMAUG00000001987) #7	Rprm (ENSMAUG00000018060) #8	Galnt13 (ENSMAUG00000007643) #9	ENSMAUG00000018084 #10	Nr4a2 (ENSMAUG00000009371) #11	Gpd2 (ENSMAUG00000015110) #12	Galnt5 (ENSMAUG00000015690) #13	Ermn (ENSMAUG00000017936) #14	Cytip (ENSMAUG00000018649) #15	Acvr1c (ENSMAUG00000018969) #16	Upp2 (ENSMAUG00000000231) #18	Ccdc148 (ENSMAUG00000000409) #19	Pkp4 (ENSMAUG00000019677) #21	Dapl1 (ENSMAUG00000007222) #22	Tanc1 (ENSMAUG00000016219) #23	Wdsub1 (ENSMAUG00000002168) #24	ENSMAUG00000007486 #25	ENSMAUG00000008617 #25	Ly75 (ENSMAUG00000015663) #28	Pla2r1 (ENSMAUG00000002027) #29	Itgb6 (ENSMAUG00000013668) #30	Rbms1 (ENSMAUG00000008550) #31	Tank (ENSMAUG00000012671) #32	Psmd14 (ENSMAUG00000014021) #33	Tbr1 (ENSMAUG00000017409) #34	Slc4a10 (ENSMAUG00000001736) #35	Dpp4 (ENSMAUG00000002786) #36	Fap (ENSMAUG00000011162)	Gca (ENSMAUG00000014968)
Murinae	ANCESTRAL SPECIES	1	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Mus	ANCESTRAL SPECIES	1	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00860000136335	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00860000136335	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00860000136335	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00860000136335	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
spretus	MODERN SPECIES	11	Rprm (MGP_SPRETEiJ_G0024484) #8	Galnt13 (MGP_SPRETEiJ_G0024485) #9	Kcnj3 (MGP_SPRETEiJ_G0024486) #10	Nr4a2 (MGP_SPRETEiJ_G0024487) #11	Gpd2 (MGP_SPRETEiJ_G0024488) #12	Galnt5 (MGP_SPRETEiJ_G0024489) #13	Ermn (MGP_SPRETEiJ_G0024490) #14	Cytip (MGP_SPRETEiJ_G0024491) #15	Acvr1c (MGP_SPRETEiJ_G0024492) #16	Acvr1 (MGP_SPRETEiJ_G0024493) #17	MGP_SPRETEiJ_G0024494	Upp2 (MGP_SPRETEiJ_G0024495) #18	Ccdc148 (MGP_SPRETEiJ_G0024496) #19	MGP_SPRETEiJ_G0024497	Pkp4 (MGP_SPRETEiJ_G0024498) #21	Dapl1 (MGP_SPRETEiJ_G0024499) #22	Tanc1 (MGP_SPRETEiJ_G0024500) #23	Wdsub1 (MGP_SPRETEiJ_G0024501) #24	Baz2b (MGP_SPRETEiJ_G0024502) #25	Marchf7 (MGP_SPRETEiJ_G0024503) #26	Cd302 (MGP_SPRETEiJ_G0024504) #27	Ly75 (MGP_SPRETEiJ_G0024505) #28	Pla2r1 (MGP_SPRETEiJ_G0024506) #29	Itgb6 (MGP_SPRETEiJ_G0024507) #30	Rbms1 (MGP_SPRETEiJ_G0024508) #31	Tank (MGP_SPRETEiJ_G0024509) #32	Psmd14 (MGP_SPRETEiJ_G0024510) #33	Tbr1 (MGP_SPRETEiJ_G0024511) #34	Slc4a10 (MGP_SPRETEiJ_G0024512) #35	Dpp4 (MGP_SPRETEiJ_G0024513) #36	Gcg (MGP_SPRETEiJ_G0024514) #37
Steppe mouse	MODERN SPECIES	3254			Galnt5 (ENSMSIG00000001380) #13	Ermn (ENSMSIG00000001436) #14	Cytip (ENSMSIG00000001449) #15	Acvr1c (ENSMSIG00000001491) #16	Acvr1 (ENSMSIG00000001643) #17	ENSMSIG00000001678	Upp2 (ENSMSIG00000001709) #18	Ccdc148 (ENSMSIG00000001814) #19	ENSMSIG00000001865	Pkp4 (ENSMSIG00000001926) #21	ENSMSIG00000002790	ENSMSIG00000002808	ENSMSIG00000002816	Dapl1 (ENSMSIG00000002836) #22	Tanc1 (ENSMSIG00000002882) #23	ENSMSIG00000003299	ENSMSIG00000003347	ENSMSIG00000003352	Wdsub1 (ENSMSIG00000003389) #24	Baz2b (ENSMSIG00000003509) #25	ENSMSIG00000004135	ENSMSIG00000004156	Marchf7 (ENSMSIG00000004194) #26	Cd302 (ENSMSIG00000004320) #27	Ly75 (ENSMSIG00000004350) #28	Pla2r1 (ENSMSIG00000004518) #29	Itgb6 (ENSMSIG00000004664) #30	Rbms1 (ENSMSIG00000004771) #31	ENSMSIG00000005083
Mouse	MODERN SPECIES	11	Prpf40a (ENSMUSG00000061136)	Arl6ip6 (ENSMUSG00000026960) #7	Rprm (ENSMUSG00000075334) #8	Galnt13 (ENSMUSG00000060988) #9	Kcnj3 (ENSMUSG00000026824) #10	Nr4a2 (ENSMUSG00000026826) #11	Gpd2 (ENSMUSG00000026827) #12	Galnt5 (ENSMUSG00000026828) #13	Ermn (ENSMUSG00000026830) #14	Cytip (ENSMUSG00000026832) #15	Acvr1c (ENSMUSG00000026834) #16	Acvr1 (ENSMUSG00000026836) #17	Upp2 (ENSMUSG00000026839) #18	Ccdc148 (ENSMUSG00000036641) #19	Pkp4 (ENSMUSG00000026991) #21	Dapl1 (ENSMUSG00000026989) #22	Tanc1 (ENSMUSG00000035168) #23	Wdsub1 (ENSMUSG00000026988) #24	Baz2b (ENSMUSG00000026987) #25	Marchf7 (ENSMUSG00000026977) #26	Cd302 (ENSMUSG00000060703) #27	Ly75 (ENSMUSG00000026980) #28	Pla2r1 (ENSMUSG00000054580) #29	Itgb6 (ENSMUSG00000026971) #30	Rbms1 (ENSMUSG00000026970) #31	Tank (ENSMUSG00000064289) #32	Psmd14 (ENSMUSG00000026914) #33	Tbr1 (ENSMUSG00000035033) #34	Slc4a10 (ENSMUSG00000026904) #35	Dpp4 (ENSMUSG00000035000) #36	Gcg (ENSMUSG00000000394) #37
Ryukyu mouse	MODERN SPECIES	11	Arl6ip6 (MGP_CAROLIEiJ_G0023562) #7	Rprm (MGP_CAROLIEiJ_G0023563) #8	Galnt13 (MGP_CAROLIEiJ_G0023564) #9	Kcnj3 (MGP_CAROLIEiJ_G0023565) #10	Nr4a2 (MGP_CAROLIEiJ_G0023566) #11	Gpd2 (MGP_CAROLIEiJ_G0023567) #12	Galnt5 (MGP_CAROLIEiJ_G0023568) #13	Ermn (MGP_CAROLIEiJ_G0023569) #14	Cytip (MGP_CAROLIEiJ_G0023570) #15	Acvr1c (MGP_CAROLIEiJ_G0023571) #16	Acvr1 (MGP_CAROLIEiJ_G0023572) #17	MGP_CAROLIEiJ_G0023573	Upp2 (MGP_CAROLIEiJ_G0023574) #18	Ccdc148 (MGP_CAROLIEiJ_G0023575) #19	Pkp4 (MGP_CAROLIEiJ_G0023576) #21	Dapl1 (MGP_CAROLIEiJ_G0023577) #22	Tanc1 (MGP_CAROLIEiJ_G0023578) #23	Wdsub1 (MGP_CAROLIEiJ_G0023579) #24	Baz2b (MGP_CAROLIEiJ_G0023580) #25	Marchf7 (MGP_CAROLIEiJ_G0023581) #26	Cd302 (MGP_CAROLIEiJ_G0023582) #27	Ly75 (MGP_CAROLIEiJ_G0023583) #28	Pla2r1 (MGP_CAROLIEiJ_G0023584) #29	Itgb6 (MGP_CAROLIEiJ_G0023585) #30	Rbms1 (MGP_CAROLIEiJ_G0023586) #31	Tank (MGP_CAROLIEiJ_G0023587) #32	Psmd14 (MGP_CAROLIEiJ_G0023588) #33	Tbr1 (MGP_CAROLIEiJ_G0023589) #34	Slc4a10 (MGP_CAROLIEiJ_G0023590) #35	Dpp4 (MGP_CAROLIEiJ_G0023591) #36	Gcg (MGP_CAROLIEiJ_G0023592) #37
Shrew mouse	MODERN SPECIES	16	Arl6ip6 (MGP_PahariEiJ_G0025013) #7	Rprm (MGP_PahariEiJ_G0025014) #8	Galnt13 (MGP_PahariEiJ_G0025015) #9	Kcnj3 (MGP_PahariEiJ_G0025016) #10	Nr4a2 (MGP_PahariEiJ_G0025017) #11	Gpd2 (MGP_PahariEiJ_G0025018) #12	Galnt5 (MGP_PahariEiJ_G0025019) #13	Ermn (MGP_PahariEiJ_G0025020) #14	Cytip (MGP_PahariEiJ_G0025021) #15	Acvr1c (MGP_PahariEiJ_G0025022) #16	Acvr1 (MGP_PahariEiJ_G0025023) #17	MGP_PahariEiJ_G0025024	Upp2 (MGP_PahariEiJ_G0025025) #18	Ccdc148 (MGP_PahariEiJ_G0025026) #19	Pkp4 (MGP_PahariEiJ_G0025027) #21	Dapl1 (MGP_PahariEiJ_G0025028) #22	Tanc1 (MGP_PahariEiJ_G0025029) #23	Wdsub1 (MGP_PahariEiJ_G0025030) #24	Baz2b (MGP_PahariEiJ_G0025031) #25	Marchf7 (MGP_PahariEiJ_G0025032) #26	Cd302 (MGP_PahariEiJ_G0025033) #27	Ly75 (MGP_PahariEiJ_G0025034) #28	Pla2r1 (MGP_PahariEiJ_G0025035) #29	Itgb6 (MGP_PahariEiJ_G0025036) #30	Rbms1 (MGP_PahariEiJ_G0025037) #31	Tank (MGP_PahariEiJ_G0025038) #32	Psmd14 (MGP_PahariEiJ_G0025039) #33	Tbr1 (MGP_PahariEiJ_G0025040) #34	Slc4a10 (MGP_PahariEiJ_G0025041) #35	Dpp4 (MGP_PahariEiJ_G0025042) #36	Gcg (MGP_PahariEiJ_G0025043) #37
Rat	MODERN SPECIES	13	Rprm (ENSRNOG00000005109) #8	Galnt13 (ENSRNOG00000005335) #9	ENSRNOG00000065543	Kcnj3 (ENSRNOG00000005369) #10	Nr4a2 (ENSRNOG00000005600) #11	Gpd2 (ENSRNOG00000033824) #12	Galnt5 (ENSRNOG00000004645) #13	Ermn (ENSRNOG00000021472) #14	Cytip (ENSRNOG00000004772) #15	Acvr1c (ENSRNOG00000004828) #16	Acvr1 (ENSRNOG00000005033) #17	Gapdh-ps1 (ENSRNOG00000071205)	Upp2 (ENSRNOG00000005341) #18	Ccdc148 (ENSRNOG00000057740) #19	Pkp4 (ENSRNOG00000005504) #21	Dapl1 (ENSRNOG00000005743) #22	ENSRNOG00000064239	Tanc1 (ENSRNOG00000025394) #23	Wdsub1 (ENSRNOG00000005990) #24	Baz2b (ENSRNOG00000056984) #25	LOC100361645 (ENSRNOG00000031951)	Marchf7 (ENSRNOG00000006241) #26	Cd302 (ENSRNOG00000006623) #27	Ly75 (ENSRNOG00000007012) #28	Pla2r1 (ENSRNOG00000008129) #29	Itgb6 (ENSRNOG00000008346) #30	Rbms1 (ENSRNOG00000008482) #31	ENSRNOG00000065937	Tank (ENSRNOG00000008859) #32	Psmd14 (ENSRNOG00000061129) #33	Tbr1 (ENSRNOG00000005049) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	744															Pkp4 (ENSNGAG00000000164) #21	Dapl1 (ENSNGAG00000000515) #22
Lesser Egyptian jerboa	MODERN SPECIES	46	ENSJJAG00000002819	Galnt13 (ENSJJAG00000010483) #9	Kcnj3 (ENSJJAG00000007165) #10	ENSJJAG00000022824	Nr4a2 (ENSJJAG00000018362) #11	ENSJJAG00000022660	ENSJJAG00000018801 #12	Galnt5 (ENSJJAG00000004437) #13	Ermn (ENSJJAG00000017224) #14	Cytip (ENSJJAG00000015679) #15	Acvr1c (ENSJJAG00000000840) #16	Acvr1 (ENSJJAG00000021757) #17	Upp2 (ENSJJAG00000019359) #18	Ccdc148 (ENSJJAG00000012594) #19	Pkp4 (ENSJJAG00000010175) #21	Dapl1 (ENSJJAG00000008272) #22	Tanc1 (ENSJJAG00000015166) #23	Wdsub1 (ENSJJAG00000017632) #24	Baz2b (ENSJJAG00000021770) #25	ENSJJAG00000001578	Marchf7 (ENSJJAG00000019998) #26	Cd302 (ENSJJAG00000020650) #27	Ly75 (ENSJJAG00000022255) #28	Pla2r1 (ENSJJAG00000000795) #29	Itgb6 (ENSJJAG00000012524) #30	Rbms1 (ENSJJAG00000016543) #31	Tank (ENSJJAG00000021298) #32	Psmd14 (ENSJJAG00000011392) #33	Tbr1 (ENSJJAG00000005749) #34	ENSJJAG00000012337	Slc4a10 (ENSJJAG00000015221) #35
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000028417	Rprm (ENSDORG00000003407) #8	Galnt13 (ENSDORG00000011932) #9	Kcnj3 (ENSDORG00000005402) #10	Nr4a2 (ENSDORG00000007987) #11	Gpd2 (ENSDORG00000004451) #12	Galnt5 (ENSDORG00000003518) #13	Ermn (ENSDORG00000003519) #14	ENSDORG00000023938	Cytip (ENSDORG00000015983) #15	Acvr1c (ENSDORG00000010112) #16	Acvr1 (ENSDORG00000013457) #17	Upp2 (ENSDORG00000005683) #18	Ccdc148 (ENSDORG00000008724) #19	Pkp4 (ENSDORG00000007017) #21	Dapl1 (ENSDORG00000009147) #22	Tanc1 (ENSDORG00000010962) #23	Wdsub1 (ENSDORG00000005593) #24	Baz2b (ENSDORG00000005595) #25	Marchf7 (ENSDORG00000006639) #26	Cd302 (ENSDORG00000006643) #27	Ly75 (ENSDORG00000006646) #28	Pla2r1 (ENSDORG00000012445) #29	Itgb6 (ENSDORG00000005479) #30	Rbms1 (ENSDORG00000007103) #31	Tank (ENSDORG00000015075) #32	Psmd14 (ENSDORG00000011046) #33	Tbr1 (ENSDORG00000011049) #34	Slc4a10 (ENSDORG00000001895) #35	Dpp4 (ENSDORG00000001896) #36	Gcg (ENSDORG00000001900) #37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Squirrel	MODERN SPECIES	69	PRPF40A (ENSSTOG00000001642)	ARL6IP6 (ENSSTOG00000001658) #7	RPRM (ENSSTOG00000026311) #8	GALNT13 (ENSSTOG00000011628) #9	KCNJ3 (ENSSTOG00000014395) #10	NR4A2 (ENSSTOG00000002966) #11	GPD2 (ENSSTOG00000005221) #12	ENSSTOG00000021734 #13	ERMN (ENSSTOG00000006613) #14	CYTIP (ENSSTOG00000009143) #15	ACVR1C (ENSSTOG00000009159) #16	ACVR1 (ENSSTOG00000004704) #17	UPP2 (ENSSTOG00000030477) #18	CCDC148 (ENSSTOG00000016271) #19	PKP4 (ENSSTOG00000007684) #21	DAPL1 (ENSSTOG00000007725) #22	TANC1 (ENSSTOG00000009738) #23	WDSUB1 (ENSSTOG00000009762) #24	BAZ2B (ENSSTOG00000009772) #25	MARCHF7 (ENSSTOG00000024765) #26	CD302 (ENSSTOG00000030907) #27	LY75 (ENSSTOG00000015933) #28	PLA2R1 (ENSSTOG00000008164) #29	ITGB6 (ENSSTOG00000008224) #30	RBMS1 (ENSSTOG00000012501) #31	TANK (ENSSTOG00000007754) #32	PSMD14 (ENSSTOG00000014883) #33	TBR1 (ENSSTOG00000023843) #34	SLC4A10 (ENSSTOG00000004841) #35	DPP4 (ENSSTOG00000004878) #36	GCG (ENSSTOG00000004914) #37
Arctic ground squirrel	MODERN SPECIES	247							NR4A2 (ENSUPAG00010002498) #11	GPD2 (ENSUPAG00010002450) #12	GALNT5 (ENSUPAG00010002439) #13	ERMN (ENSUPAG00010002433) #14	CYTIP (ENSUPAG00010002402) #15	ACVR1C (ENSUPAG00010002309) #16	ACVR1 (ENSUPAG00010002272) #17	CCDC148 (ENSUPAG00010002234) #19	PKP4 (ENSUPAG00010001863) #21	DAPL1 (ENSUPAG00010001849) #22	TANC1 (ENSUPAG00010001635) #23	WDSUB1 (ENSUPAG00010001603) #24	BAZ2B (ENSUPAG00010001347) #25
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000022338 #9	ENSMMMG00000022342 #9	ENSMMMG00000022354	KCNJ3 (ENSMMMG00000022368) #10	NR4A2 (ENSMMMG00000022388) #11	GPD2 (ENSMMMG00000022395) #12	ENSMMMG00000022423 #13	ENSMMMG00000022427 #13	ERMN (ENSMMMG00000022432) #14	CYTIP (ENSMMMG00000022447) #15	ACVR1C (ENSMMMG00000022458) #16	ACVR1 (ENSMMMG00000022485) #17	UPP2 (ENSMMMG00000022512) #18	CCDC148 (ENSMMMG00000022526) #19	PKP4 (ENSMMMG00000022548) #21	DAPL1 (ENSMMMG00000022578) #22	TANC1 (ENSMMMG00000022589) #23	WDSUB1 (ENSMMMG00000022608) #24	BAZ2B (ENSMMMG00000022620) #25	MARCHF7 (ENSMMMG00000022639) #26	CD302 (ENSMMMG00000022645) #27	LY75 (ENSMMMG00000022655) #28	PLA2R1 (ENSMMMG00000022670) #29	ITGB6 (ENSMMMG00000022686) #30	RBMS1 (ENSMMMG00000022695) #31	TANK (ENSMMMG00000022709) #32	PSMD14 (ENSMMMG00000022716) #33	TBR1 (ENSMMMG00000022720) #34	ENSMMMG00000022721	SLC4A10 (ENSMMMG00000022733) #35	DPP4 (ENSMMMG00000022753) #36
Eurasian red squirrel	MODERN SPECIES	12	RPRM (ENSSVLG00005007559) #8	ENSSVLG00005007594 #9	KCNJ3 (ENSSVLG00005007729) #10	NR4A2 (ENSSVLG00005007787) #11	GPD2 (ENSSVLG00005007886) #12	ENSSVLG00005008042 #13	ERMN (ENSSVLG00005008084) #14	CYTIP (ENSSVLG00005008173) #15	ACVR1C (ENSSVLG00005008270) #16	ACVR1 (ENSSVLG00005008490) #17	ENSSVLG00005008520	UPP2 (ENSSVLG00005008546) #18	CCDC148 (ENSSVLG00005008598) #19	PKP4 (ENSSVLG00005008751) #21	ENSSVLG00005008811	DAPL1 (ENSSVLG00005008852) #22	TANC1 (ENSSVLG00005009095) #23	WDSUB1 (ENSSVLG00005010265) #24	BAZ2B (ENSSVLG00005010334) #25	MARCHF7 (ENSSVLG00005010418) #26	CD302 (ENSSVLG00005010561) #27	LY75 (ENSSVLG00005010649) #28	ENSSVLG00005010937	PLA2R1 (ENSSVLG00005010982) #29	ITGB6 (ENSSVLG00005011104) #30	RBMS1 (ENSSVLG00005011820) #31	ENSSVLG00005012042	ENSSVLG00005012129 #32	PSMD14 (ENSSVLG00005012351) #33	TBR1 (ENSSVLG00005012398) #34	SLC4A10 (ENSSVLG00005012596) #35
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154574.d.e #22
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000003974	ENSHGLG00000006730	ENSHGLG00000042855	ENSHGLG00000006284	ABI3BP (ENSHGLG00000002717)	TFG (ENSHGLG00000008981)	ADGRG7 (ENSHGLG00000019585)	TMEM45A (ENSHGLG00000005643)	TOMM70 (ENSHGLG00000004139)	NIT2 (ENSHGLG00000003817)	TBC1D23 (ENSHGLG00000003046)	ENSHGLG00000039511	ENSHGLG00000014627	CMSS1 (ENSHGLG00000019481)	FILIP1L (ENSHGLG00000019614)	ENSHGLG00000037324 #22	ENSHGLG00000019607	ENSHGLG00000037238	ENSHGLG00000019611	ENSHGLG00000019612	ENSHGLG00000001452	ENSHGLG00000049622	ENSHGLG00000014991	ST3GAL6 (ENSHGLG00000002566)	ENSHGLG00000040470	ENSHGLG00000002474	ENSHGLG00000033846	ENSHGLG00000046546	CPOX (ENSHGLG00000002023)	CLDND1 (ENSHGLG00000001965)	GPR15 (ENSHGLG00000019852)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000045711	ENSHGLG00000034810	ENSHGLG00000010960	ENSHGLG00000020605	SSR3 (ENSHGLG00000037144)	KCNAB1 (ENSHGLG00000019332)	ENSHGLG00000039018	ENSHGLG00000019405	ENSHGLG00000019482	SLC33A1 (ENSHGLG00000042989)	ENSHGLG00000019192	PLCH1 (ENSHGLG00000017434)	ENSHGLG00000035877	MME (ENSHGLG00000013970)	ENSHGLG00000041038	ENSHGLG00000039740 #22	ENSHGLG00000049890	ENSHGLG00000042929	GPR149 (ENSHGLG00000013607)	DHX36 (ENSHGLG00000017407)	ARHGEF26 (ENSHGLG00000017391)	RAP2B (ENSHGLG00000032240)	ENSHGLG00000013739	P2RY1 (ENSHGLG00000012962)	MBNL1 (ENSHGLG00000012911)	ENSHGLG00000032291	ENSHGLG00000045627	SUCNR1 (ENSHGLG00000012430)	ENSHGLG00000012324	ENSHGLG00000012179	ENSHGLG00000012034
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d.f #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000032785	ENSHGLG00000005496	ENSHGLG00000004699 #11	ENSHGLG00000004553 #12	ENSHGLG00000035939	ENSHGLG00000025302	GALNT5 (ENSHGLG00000040944) #13	ERMN (ENSHGLG00000044020) #14	CYTIP (ENSHGLG00000049755) #15	ACVR1C (ENSHGLG00000007777) #16	ACVR1 (ENSHGLG00000006379) #17	UPP2 (ENSHGLG00000004451) #18	CCDC148 (ENSHGLG00000004309) #19	ENSHGLG00000007575 #21	ENSHGLG00000004955	ENSHGLG00000009016 #22	ENSHGLG00000048160	TANC1 (ENSHGLG00000014465) #23	WDSUB1 (ENSHGLG00000014132) #24	BAZ2B (ENSHGLG00000011355) #25	MARCHF7 (ENSHGLG00000008628) #26	CD302 (ENSHGLG00000007983) #27	LY75 (ENSHGLG00000005575) #28	PLA2R1 (ENSHGLG00000007846) #29	ITGB6 (ENSHGLG00000006124) #30	RBMS1 (ENSHGLG00000010387) #31	ENSHGLG00000038629	ENSHGLG00000020395	ENSHGLG00000005114 #32	ENSHGLG00000005063 #33	TBR1 (ENSHGLG00000009646) #34
Naked mole-rat female	MODERN SPECIES	11	CSRNP1 (ENSHGLG00000011052)	XIRP1 (ENSHGLG00000021303)	CX3CR1 (ENSHGLG00000016099)	ENSHGLG00000021278	ENSHGLG00000019031	ENSHGLG00000047149	ENSHGLG00000017413	ENSHGLG00000014404	ZNF148 (ENSHGLG00000011875)	ENSHGLG00000016690	ENSHGLG00000037460	ITGB5 (ENSHGLG00000011184)	ENSHGLG00000047740	UMPS (ENSHGLG00000011551)	KALRN (ENSHGLG00000018826)	ENSHGLG00000020711 #22	ENSHGLG00000012259	ENSHGLG00000046407	ENSHGLG00000001029	CCDC14 (ENSHGLG00000001004)	ENSHGLG00000048936	MYLK (ENSHGLG00000000906)	ENSHGLG00000050538	ADCY5 (ENSHGLG00000002391)	SEC22A (ENSHGLG00000002346)	ENSHGLG00000002278	SEMA5B (ENSHGLG00000002109)	SLC49A4 (ENSHGLG00000002042)	HSPBAP1 (ENSHGLG00000001996)	PARP14 (ENSHGLG00000001930)	PARP9 (ENSHGLG00000001805)
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00930000150980.a	ENSGT00390000009987 #7	ENSGT00390000010523.c.b #8	ENSGT00940000158904 #9	ENSGT01080000257365.b.a.a.b.a #10	ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d.f #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Hystricomorpha_b	ANCESTRAL SPECIES	24						ENSGT00950000183038.a.b.b.b #11	ENSGT00390000001718 #12	ENSGT00940000159241 #13	ENSGT01090000260082.d.a.a.a.b #14	ENSGT00530000063734.a #15	ENSGT00940000158842 #16	ENSGT00940000160160 #17	ENSGT00940000161094 #18	ENSGT00940000153988.A #19	ENSGT00940000155773.b #21	ENSGT00940000154574.d.f #22	ENSGT00940000155655.B #23	ENSGT00940000157230 #24	ENSGT00940000155359 #25	ENSGT00530000063836.a #26	ENSGT01050000244842.a.b.a #27	ENSGT01050000244842.a.b.b.a.a.a #28	ENSGT01050000244842.a.b.b.a.a.b #29	ENSGT01100000263555.a.a.a #30	ENSGT00940000156082 #31	ENSGT00390000008712 #32	ENSGT00730000111116 #33	ENSGT00940000156994 #34	ENSGT00940000156972 #35	ENSGT00940000161291 #36	ENSGT00390000005372 #37
Long-tailed chinchilla	MODERN SPECIES	156						NR4A2 (ENSCLAG00000003290) #11	GPD2 (ENSCLAG00000002866) #12	GALNT5 (ENSCLAG00000003428) #13	ERMN (ENSCLAG00000003341) #14	CYTIP (ENSCLAG00000003247) #15	ACVR1C (ENSCLAG00000003034) #16	ACVR1 (ENSCLAG00000004342) #17	UPP2 (ENSCLAG00000003919) #18	CCDC148 (ENSCLAG00000003622) #19	PKP4 (ENSCLAG00000005831) #21	DAPL1 (ENSCLAG00000004812) #22	TANC1 (ENSCLAG00000004542) #23	ENSCLAG00000007913 #24	BAZ2B (ENSCLAG00000006190) #25	ENSCLAG00000009790	MARCHF7 (ENSCLAG00000009318) #26	CD302 (ENSCLAG00000012904) #27	LY75 (ENSCLAG00000004023) #28	PLA2R1 (ENSCLAG00000003681) #29	ITGB6 (ENSCLAG00000003399) #30	RBMS1 (ENSCLAG00000003031) #31	ENSCLAG00000002833	TANK (ENSCLAG00000002677) #32	ENSCLAG00000010278 #33	TBR1 (ENSCLAG00000010093) #34	SLC4A10 (ENSCLAG00000002940) #35
Degu	MODERN SPECIES	73	ENSODEG00000014644	ENSODEG00000020160	ENSODEG00000014372	NR4A2 (ENSODEG00000014223) #11	GPD2 (ENSODEG00000013945) #12	ENSODEG00000014559	GALNT5 (ENSODEG00000014096) #13	ERMN (ENSODEG00000014133) #14	ENSODEG00000014529 #15	ACVR1C (ENSODEG00000013991) #16	ACVR1 (ENSODEG00000014264) #17	UPP2 (ENSODEG00000014593) #18	CCDC148 (ENSODEG00000014894) #19	ENSODEG00000020204	PKP4 (ENSODEG00000014779) #21	DAPL1 (ENSODEG00000014464) #22	TANC1 (ENSODEG00000014910) #23	WDSUB1 (ENSODEG00000014178) #24	BAZ2B (ENSODEG00000014127) #25	ENSODEG00000015125	MARCHF7 (ENSODEG00000013942) #26	CD302 (ENSODEG00000015670) #27	LY75 (ENSODEG00000014691) #28	ENSODEG00000014957	ITGB6 (ENSODEG00000013253) #30	RBMS1 (ENSODEG00000013934) #31	ENSODEG00000020118	ENSODEG00000013723 #32	PSMD14 (ENSODEG00000015872) #33	TBR1 (ENSODEG00000013807) #34	SLC4A10 (ENSODEG00000013195) #35
Guinea pig	MODERN SPECIES	3	FMNL2 (ENSCPOG00000013482)	PRPF40A (ENSCPOG00000013494)	RPRM (ENSCPOG00000005597) #8	GALNT13 (ENSCPOG00000013115) #9	ENSCPOG00000005051 #10	ENSCPOG00000034740 #10	NR4A2 (ENSCPOG00000008225) #11	GPD2 (ENSCPOG00000000193) #12	GALNT5 (ENSCPOG00000000913) #13	CYTIP (ENSCPOG00000034296) #15	ACVR1C (ENSCPOG00000007111) #16	ACVR1 (ENSCPOG00000008791) #17	UPP2 (ENSCPOG00000003006) #18	CCDC148 (ENSCPOG00000004172) #19	PKP4 (ENSCPOG00000012130) #21	DAPL1 (ENSCPOG00000033811) #22	TANC1 (ENSCPOG00000008679) #23	WDSUB1 (ENSCPOG00000008696) #24	BAZ2B (ENSCPOG00000015233) #25	MARCHF7 (ENSCPOG00000003969) #26	CD302 (ENSCPOG00000003976) #27	LY75 (ENSCPOG00000008372) #28	PLA2R1 (ENSCPOG00000008394) #29	ITGB6 (ENSCPOG00000012302) #30	RBMS1 (ENSCPOG00000012310) #31	TANK (ENSCPOG00000015267) #32	PSMD14 (ENSCPOG00000005879) #33	ENSCPOG00000005881 #34	SLC4A10 (ENSCPOG00000012631) #35	DPP4 (ENSCPOG00000035727) #36	GCG (ENSCPOG00000024193) #37