Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h #25	ENSGT00940000160642 #26	ENSGT00440000037606.b	ENSGT00940000158781 #29	ENSGT00390000015769.B	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000161508	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.a.b ##37
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h #25	ENSGT00940000160642 #26	ENSGT00440000037606.b	ENSGT00940000158781 #29	ENSGT00390000015769.B	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.b #37	ENSGT00940000162639
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h #25	ENSGT00940000160642 #26	ENSGT00940000158781 #29	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.b #37	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h #25	ENSGT00940000160642 #26	ENSGT00940000158781 #29	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.b #37	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Long-tailed chinchilla	MODERN SPECIES	164	ICA1L (ENSCLAG00000005015) #7	WDR12 (ENSCLAG00000004491) #8	CARF (ENSCLAG00000007915) #9	ENSCLAG00000007700 #10	ENSCLAG00000006700 #11	NBEAL1 (ENSCLAG00000005102) #12	CYP20A1 (ENSCLAG00000004163) #13	ENSCLAG00000006025 #14	ENSCLAG00000004760 #15	ABI2 (ENSCLAG00000004021) #16	ENSCLAG00000003175 #17	CD28 (ENSCLAG00000004670) #18	CTLA4 (ENSCLAG00000004042) #19	ICOS (ENSCLAG00000003964) #20	PARD3B (ENSCLAG00000010240) #21	NRP2 (ENSCLAG00000009120) #22	INO80D (ENSCLAG00000006191) #23	NDUFS1 (ENSCLAG00000009634) #24	EEF1B2 (ENSCLAG00000009181) #25	CMKLR2 (ENSCLAG00000008973) #26	ENSCLAG00000008490 #27	ATXN3L (ENSCLAG00000005825) #28	ADAM23 (ENSCLAG00000004674) #29	DYTN (ENSCLAG00000003705) #30	MDH1B (ENSCLAG00000003385) #31	FASTKD2 (ENSCLAG00000007036) #32	KLF7 (ENSCLAG00000006083) #33	CREB1 (ENSCLAG00000005853) #34	METTL21A (ENSCLAG00000005572) #35	ENSCLAG00000005432 #36	ENSCLAG00000004502 #37
Degu	MODERN SPECIES	57	ENSODEG00000009897	ENSODEG00000011455	WDR12 (ENSODEG00000011602) #8	CARF (ENSODEG00000011312) #9	NBEAL1 (ENSODEG00000010440) #12	CYP20A1 (ENSODEG00000010253) #13	ENSODEG00000009779	ABI2 (ENSODEG00000009457) #16	ENSODEG00000013477 #17	CTLA4 (ENSODEG00000009327) #19	ENSODEG00000010295	ICOS (ENSODEG00000011327) #20	ENSODEG00000009131	ENSODEG00000010021	PARD3B (ENSODEG00000012523) #21	ENSODEG00000010455 #22	INO80D (ENSODEG00000009769) #23	ENSODEG00000019630	ENSODEG00000008842 #24	ENSODEG00000009030 #24	ENSODEG00000008974 #24	ENSODEG00000010229 #25	ENSODEG00000019757	ADAM23 (ENSODEG00000011161) #29	DYTN (ENSODEG00000009029) #30	MDH1B (ENSODEG00000009494) #31	FASTKD2 (ENSODEG00000009880) #32	KLF7 (ENSODEG00000010345) #33	ENSODEG00000009956	ENSODEG00000009302	CREB1 (ENSODEG00000010264) #34
Guinea pig	MODERN SPECIES	13	SUMO1 (ENSCPOG00000039864)	NOP58 (ENSCPOG00000030510)	BMPR2 (ENSCPOG00000009586)	ICA1L (ENSCPOG00000009349) #7	WDR12 (ENSCPOG00000008824) #8	CARF (ENSCPOG00000008827) #9	NBEAL1 (ENSCPOG00000008009) #12	CYP20A1 (ENSCPOG00000009758) #13	ABI2 (ENSCPOG00000007562) #16	RAPH1 (ENSCPOG00000020239) #17	CD28 (ENSCPOG00000035938) #18	CTLA4 (ENSCPOG00000019534) #19	ICOS (ENSCPOG00000030931) #20	ENSCPOG00000030358	PARD3B (ENSCPOG00000004380) #21	NRP2 (ENSCPOG00000004390) #22	ENSCPOG00000010964 #23	NDUFS1 (ENSCPOG00000005555) #24	EEF1B2 (ENSCPOG00000014496) #25	ADAM23 (ENSCPOG00000005871) #29	MDH1B (ENSCPOG00000005608) #31	FASTKD2 (ENSCPOG00000005624) #32	KLF7 (ENSCPOG00000009080) #33	CREB1 (ENSCPOG00000010778) #34	METTL21A (ENSCPOG00000034803) #35	ENSCPOG00000035156 #37	FZD5 (ENSCPOG00000038146)	PLEKHM3 (ENSCPOG00000004119)	CRYGC (ENSCPOG00000000186)	ENSCPOG00000022025	CRYGA (ENSCPOG00000015047)
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000004722	ENSHGLG00000020889	CARF (ENSHGLG00000007326) #9	ENSHGLG00000037622	NBEAL1 (ENSHGLG00000004471) #12	CYP20A1 (ENSHGLG00000050312) #13	ABI2 (ENSHGLG00000007481) #16	ENSHGLG00000005031 #17	CD28 (ENSHGLG00000037192) #18	CTLA4 (ENSHGLG00000009115) #19	ICOS (ENSHGLG00000008777) #20	ENSHGLG00000043313	ENSHGLG00000016877	ENSHGLG00000048100	PARD3B (ENSHGLG00000004982) #21	NRP2 (ENSHGLG00000010562) #22	ENSHGLG00000049876	INO80D (ENSHGLG00000018537) #23	NDUFS1 (ENSHGLG00000015179) #24	EEF1B2 (ENSHGLG00000015147) #25	ENSHGLG00000045433	CMKLR2 (ENSHGLG00000046982) #26	ENSHGLG00000044712	ADAM23 (ENSHGLG00000006393) #29	FAM237A (ENSHGLG00000030355)	ENSHGLG00000005368	MDH1B (ENSHGLG00000004936) #31	FASTKD2 (ENSHGLG00000004761) #32	ENSHGLG00000045814	KLF7 (ENSHGLG00000044157) #33	ENSHGLG00000017319
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h #25	ENSGT00940000160642 #26	ENSGT00440000037606.b	ENSGT00940000158781 #29	ENSGT00390000015769.B	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000161508	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.a.b ##37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h.g #25	ENSGT00940000160642 #26	ENSGT00440000037606.b	ENSGT00940000158781 #29	ENSGT00390000015769.B	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000161508	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.a.b ##37
Marmotini_b	ANCESTRAL SPECIES	103	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a #7	ENSGT00930000150950.b #8	ENSGT00390000013916 #9	ENSGT00940000155041 #12	ENSGT00500000044939 #13	ENSGT00940000156089 #16	ENSGT00940000156552 #17	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #23	ENSGT00940000153514.b #24	ENSGT00950000183014.f.a.h.g #25	ENSGT00940000160642 #26	ENSGT00440000037606.b	ENSGT00940000158781 #29	ENSGT00390000015769.B	ENSGT00940000162403 #30	ENSGT00530000063410.b #31	ENSGT01030000234607.A.b #32	ENSGT00940000161508	ENSGT00940000155235 #33	ENSGT00940000155408 #34	ENSGT00940000157249 #35	ENSGT00940000154453.b.a.b ##37
Squirrel	MODERN SPECIES	231										ABI2 (ENSSTOG00000015888) #16	RAPH1 (ENSSTOG00000028594) #17	CD28 (ENSSTOG00000026213) #18	CTLA4 (ENSSTOG00000020540) #19	ICOS (ENSSTOG00000013542) #20	PARD3B (ENSSTOG00000010207) #21	NRP2 (ENSSTOG00000010229) #22	INO80D (ENSSTOG00000028419) #23	NDUFS1 (ENSSTOG00000010255) #24	EEF1B2 (ENSSTOG00000005437) #25	CMKLR2 (ENSSTOG00000005452) #26	ZDBF2 (ENSSTOG00000001663)	ADAM23 (ENSSTOG00000024094) #29	DYTN (ENSSTOG00000019822) #30	MDH1B (ENSSTOG00000003194) #31	FASTKD2 (ENSSTOG00000022821) #32	CPO (ENSSTOG00000013351)	KLF7 (ENSSTOG00000011069) #33	CREB1 (ENSSTOG00000016482) #34	METTL21A (ENSSTOG00000016483) #35	ENSSTOG00000021511	CCNYL1 (ENSSTOG00000016484) ##37
Arctic ground squirrel	MODERN SPECIES	141								CYP20A1 (ENSUPAG00010007092) #13	ABI2 (ENSUPAG00010007107) #16	RAPH1 (ENSUPAG00010007232) #17	ENSUPAG00010007347	CD28 (ENSUPAG00010007360) #18	CTLA4 (ENSUPAG00010007371) #19	ICOS (ENSUPAG00010007386) #20	PARD3B (ENSUPAG00010007426) #21	NRP2 (ENSUPAG00010007567) #22	INO80D (ENSUPAG00010007624) #23	NDUFS1 (ENSUPAG00010007661) #24	EEF1B2 (ENSUPAG00010007678) #25	CMKLR2 (ENSUPAG00010007707) #26	ZDBF2 (ENSUPAG00010007725)	ADAM23 (ENSUPAG00010007731) #29	FAM237A (ENSUPAG00010007856)	DYTN (ENSUPAG00010007862) #30	MDH1B (ENSUPAG00010007886) #31	FASTKD2 (ENSUPAG00010007916) #32	CPO (ENSUPAG00010007941)	KLF7 (ENSUPAG00010007967) #33	CREB1 (ENSUPAG00010007984) #34	METTL21A (ENSUPAG00010008009) #35	CCNYL1 (ENSUPAG00010008021) ##37
Alpin marmot	MODERN SPECIES	8	ENSMMMG00000013017	ENSMMMG00000013051	ENSMMMG00000013060	ICA1L (ENSMMMG00000013064) #7	WDR12 (ENSMMMG00000013110) #8	CARF (ENSMMMG00000013161) #9	NBEAL1 (ENSMMMG00000013229) #12	CYP20A1 (ENSMMMG00000013312) #13	ABI2 (ENSMMMG00000013329) #16	ENSMMMG00000013568 #17	CD28 (ENSMMMG00000013599) #18	CTLA4 (ENSMMMG00000013609) #19	ICOS (ENSMMMG00000013624) #20	PARD3B (ENSMMMG00000013680) #21	ENSMMMG00000013911	NRP2 (ENSMMMG00000013924) #22	INO80D (ENSMMMG00000014555) #23	NDUFS1 (ENSMMMG00000014566) #24	ENSMMMG00000014596 #25	CMKLR2 (ENSMMMG00000014632) #26	ZDBF2 (ENSMMMG00000014650)	ADAM23 (ENSMMMG00000014678) #29	FAM237A (ENSMMMG00000014819)	DYTN (ENSMMMG00000014828) #30	ENSMMMG00000014844	MDH1B (ENSMMMG00000014852) #31	FASTKD2 (ENSMMMG00000014857) #32	CPO (ENSMMMG00000014874)	KLF7 (ENSMMMG00000014897) #33	CREB1 (ENSMMMG00000014914) #34	METTL21A (ENSMMMG00000015010) #35
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000362	BMPR2 (ENSSVLG00005000484)	ENSSVLG00005000534	ENSSVLG00005000554	ENSSVLG00005000579 #7	WDR12 (ENSSVLG00005000598) #8	ENSSVLG00005000686 #9	ENSSVLG00005000784	NBEAL1 (ENSSVLG00005000853) #12	CYP20A1 (ENSSVLG00005000970) #13	ABI2 (ENSSVLG00005001071) #16	CD28 (ENSSVLG00005001473) #18	CTLA4 (ENSSVLG00005001529) #19	ICOS (ENSSVLG00005001570) #20	PARD3B (ENSSVLG00005001789) #21	NRP2 (ENSSVLG00005002141) #22	INO80D (ENSSVLG00005002283) #23	ENSSVLG00005002396 #24	ENSSVLG00005002606 #25	CMKLR2 (ENSSVLG00005002631) #26	ENSSVLG00005002653	ADAM23 (ENSSVLG00005002721) #29	FAM237A (ENSSVLG00005002854)	DYTN (ENSSVLG00005002873) #30	MDH1B (ENSSVLG00005002924) #31	FASTKD2 (ENSSVLG00005002985) #32	CPO (ENSSVLG00005003015)	KLF7 (ENSSVLG00005003049) #33	CREB1 (ENSSVLG00005003093) #34	METTL21A (ENSSVLG00005003134) #35	ENSSVLG00005003181 ##37