Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Glires	ANCESTRAL SPECIES	14	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041.ob	ENSGT00940000155041.nb	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Pika	MODERN SPECIES	3694														PARD3B (ENSOPRG00000010812) #20	ENSOPRG00000010848 #21	NRP2 (ENSOPRG00000010856) #22
Rabbit	MODERN SPECIES	18	ENSOCUG00000006347	ENSOCUG00000030693	ENSOCUG00000010497	WDR12 (ENSOCUG00000002961)	CARF (ENSOCUG00000005335)	ENSOCUG00000027134	NBEAL1 (ENSOCUG00000008716)	CYP20A1 (ENSOCUG00000008054)	ENSOCUG00000008062	ENSOCUG00000016722	CD28 (ENSOCUG00000016134)	ENSOCUG00000030918	CTLA4 (ENSOCUG00000017274)	ICOS (ENSOCUG00000001858)	PARD3B (ENSOCUG00000007959) #20	NRP2 (ENSOCUG00000007978) #22	INO80D (ENSOCUG00000014786)	ENSOCUG00000009848	NDUFS1 (ENSOCUG00000012368)	CMKLR2 (ENSOCUG00000012384)	ENSOCUG00000024602	ENSOCUG00000009421	ADAM23 (ENSOCUG00000010659)	DYTN (ENSOCUG00000021490)	MDH1B (ENSOCUG00000010506)	ENSOCUG00000010515	CPO (ENSOCUG00000009806)	KLF7 (ENSOCUG00000009813)	ENSOCUG00000027419	CREB1 (ENSOCUG00000005427)	ENSOCUG00000005431
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Muroidea	ANCESTRAL SPECIES	20	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Chinese hamster chok1gshd	MODERN SPECIES	1	Nop58 (ENSCGRG00001017869)	ENSCGRG00001009737	Bmpr2 (ENSCGRG00001020694)	Fam117b (ENSCGRG00001020456)	Ica1l (ENSCGRG00001018928)	WDR12 (ENSCGRG00001016494)	Carf (ENSCGRG00001016848)	Nbeal1 (ENSCGRG00001018313)	Cyp20a1 (ENSCGRG00001018508)	Abi2 (ENSCGRG00001017572)	Raph1 (ENSCGRG00001019075)	Cd28 (ENSCGRG00001021553)	Ctla4 (ENSCGRG00001017244)	Icos (ENSCGRG00001016804)	Pard3b (ENSCGRG00001023180) #20	Nrp2 (ENSCGRG00001001140) #22	Ino80d (ENSCGRG00001020225)	Ndufs1 (ENSCGRG00001018185)	Eef1b2 (ENSCGRG00001017503)	Cmklr2 (ENSCGRG00001010463)	Zdbf2 (ENSCGRG00001018156)	Adam23 (ENSCGRG00001021362)	Gm39653 (ENSCGRG00001017288)	Dytn (ENSCGRG00001017611)	Mdh1b (ENSCGRG00001017642)	Fastkd2 (ENSCGRG00001020432)	Klf7 (ENSCGRG00001018794)	ENSCGRG00001018665	Creb1 (ENSCGRG00001018838)	Mettl21a (ENSCGRG00001017438)	Ccnyl1 (ENSCGRG00001017467)
Golden Hamster	MODERN SPECIES	640	Nop58 (ENSMAUG00000009734)	Bmpr2 (ENSMAUG00000009115)	Fam117b (ENSMAUG00000017770)	Ica1l (ENSMAUG00000013926)	Wdr12 (ENSMAUG00000001279)	Carf (ENSMAUG00000009693)	ENSMAUG00000007926	ENSMAUG00000001805	ENSMAUG00000007020	Abi2 (ENSMAUG00000016724)	ENSMAUG00000008616	Cd28 (ENSMAUG00000020132)	Ctla4 (ENSMAUG00000017208)	Icos (ENSMAUG00000019187)	Pard3b (ENSMAUG00000019516) #20	Nrp2 (ENSMAUG00000020662) #22	Ino80d (ENSMAUG00000012087)	ENSMAUG00000017015	Eef1b2 (ENSMAUG00000011478)	Cmklr2 (ENSMAUG00000009931)	Zdbf2 (ENSMAUG00000017491)	Adam23 (ENSMAUG00000012410)	Dytn (ENSMAUG00000021422)	Mdh1b (ENSMAUG00000016431)	Fastkd2 (ENSMAUG00000009136)	Klf7 (ENSMAUG00000022037)	Creb1 (ENSMAUG00000018215)	Mettl21a (ENSMAUG00000020877)	Fzd5 (ENSMAUG00000022033)	Plekhm3 (ENSMAUG00000021638)	ENSMAUG00000022028
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Northern American deer mouse	MODERN SPECIES	4	Bmpr2 (ENSPEMG00000022646)	Fam117b (ENSPEMG00000011700)	ENSPEMG00000024187	Ica1l (ENSPEMG00000021278)	Wdr12 (ENSPEMG00000022189)	Carf (ENSPEMG00000020983)	ENSPEMG00000028509	Nbeal1 (ENSPEMG00000029402)	Cyp20a1 (ENSPEMG00000023627)	Abi2 (ENSPEMG00000020443)	Raph1 (ENSPEMG00000022086)	Cd28 (ENSPEMG00000028537)	Ctla4 (ENSPEMG00000020722)	Icos (ENSPEMG00000015472)	Pard3b (ENSPEMG00000020745) #20	Nrp2 (ENSPEMG00000020944) #22	Ino80d (ENSPEMG00000020652)	Ndufs1 (ENSPEMG00000020453)	Eef1b2 (ENSPEMG00000016842)	Cmklr2 (ENSPEMG00000000909)	Zdbf2 (ENSPEMG00000029531)	Adam23 (ENSPEMG00000020455)	Gm39653 (ENSPEMG00000029994)	Dytn (ENSPEMG00000020630)	Mdh1b (ENSPEMG00000012142)	Fastkd2 (ENSPEMG00000010593)	ENSPEMG00000029845	Klf7 (ENSPEMG00000028836)	Creb1 (ENSPEMG00000012416)	Mettl21a (ENSPEMG00000027520)	Ccnyl1 (ENSPEMG00000022762)
Prairie vole	MODERN SPECIES	354	Daw1 (ENSMOCG00000014056)	Sphkap (ENSMOCG00000010348)	Pid1 (ENSMOCG00000022904)	Dner (ENSMOCG00000020102)	Trip12 (ENSMOCG00000021899)	Fbxo36 (ENSMOCG00000015360)	Slc16a14 (ENSMOCG00000006969)	Nbeal1 (ENSMOCG00000015319)	Abi2 (ENSMOCG00000013762)	Raph1 (ENSMOCG00000016577)	Cd28 (ENSMOCG00000003240)	Ctla4 (ENSMOCG00000018484)	ENSMOCG00000017292	Icos (ENSMOCG00000008578)	Pard3b (ENSMOCG00000021107) #20	Nrp2 (ENSMOCG00000018160) #22	Ino80d (ENSMOCG00000022487)	Ndufs1 (ENSMOCG00000018918)	Eef1b2 (ENSMOCG00000004803)	Zdbf2 (ENSMOCG00000021962)	Adam23 (ENSMOCG00000012227)	ENSMOCG00000001238	Dytn (ENSMOCG00000015652)	Mdh1b (ENSMOCG00000001314)	Fastkd2 (ENSMOCG00000019859)	ENSMOCG00000008631	Klf7 (ENSMOCG00000009593)	Creb1 (ENSMOCG00000002192)	Mettl21a (ENSMOCG00000017410)	Ccnyl1 (ENSMOCG00000016018)	Fzd5 (ENSMOCG00000013581)
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Mus	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089.l	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089.l	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
spretus	MODERN SPECIES		Sumo1 (MGP_SPRETEiJ_G0014987)	Nop58 (MGP_SPRETEiJ_G0014988)	Bmpr2 (MGP_SPRETEiJ_G0014989)	MGP_SPRETEiJ_G0014990	Ica1l (MGP_SPRETEiJ_G0014991)	Wdr12 (MGP_SPRETEiJ_G0014992)	Carf (MGP_SPRETEiJ_G0014993)	Nbeal1 (MGP_SPRETEiJ_G0014994)	Cyp20a1 (MGP_SPRETEiJ_G0014995)	Abi2 (MGP_SPRETEiJ_G0014996)	Raph1 (MGP_SPRETEiJ_G0014997)	Cd28 (MGP_SPRETEiJ_G0014998)	Ctla4 (MGP_SPRETEiJ_G0014999)	Icos (MGP_SPRETEiJ_G0015000)	Pard3b (MGP_SPRETEiJ_G0015001) #20	Nrp2 (MGP_SPRETEiJ_G0015002) #22	Ino80d (MGP_SPRETEiJ_G0015003)	Ndufs1 (MGP_SPRETEiJ_G0015004)	Eef1b2 (MGP_SPRETEiJ_G0015005)	Cmklr2 (MGP_SPRETEiJ_G0015006)	Zdbf2 (MGP_SPRETEiJ_G0015007)	Adam23 (MGP_SPRETEiJ_G0015008)	Dytn (MGP_SPRETEiJ_G0015009)	Mdh1b (MGP_SPRETEiJ_G0015010)	Fastkd2 (MGP_SPRETEiJ_G0015011)	MGP_SPRETEiJ_G0015012	Klf7 (MGP_SPRETEiJ_G0015013)	Creb1 (MGP_SPRETEiJ_G0015014)	Mettl21a (MGP_SPRETEiJ_G0015015)	Ccnyl1 (MGP_SPRETEiJ_G0015016)	Fzd5 (MGP_SPRETEiJ_G0015017)
Steppe mouse	MODERN SPECIES	44	Fam117b (ENSMSIG00000010018)	Ica1l (ENSMSIG00000010027)	Wdr12 (ENSMSIG00000010103)	Carf (ENSMSIG00000010210)	ENSMSIG00000010287	Nbeal1 (ENSMSIG00000010304)	Cyp20a1 (ENSMSIG00000010618)	ENSMSIG00000010702	Raph1 (ENSMSIG00000010756)	Cd28 (ENSMSIG00000011356)	ENSMSIG00000011370	Ctla4 (ENSMSIG00000011388)	Icos (ENSMSIG00000011424)	Pard3b (ENSMSIG00000011469) #20	ENSMSIG00000011764	Nrp2 (ENSMSIG00000011775) #22	Ino80d (ENSMSIG00000012604)	Ndufs1 (ENSMSIG00000012674)	Eef1b2 (ENSMSIG00000012804)	Cmklr2 (ENSMSIG00000012880)	Zdbf2 (ENSMSIG00000012889)	ENSMSIG00000012937	Adam23 (ENSMSIG00000012957)	ENSMSIG00000013264	Gm39653 (ENSMSIG00000013270)	Dytn (ENSMSIG00000013289)
Mouse	MODERN SPECIES		Sumo1 (ENSMUSG00000026021)	Nop58 (ENSMUSG00000026020)	Bmpr2 (ENSMUSG00000067336)	Fam117b (ENSMUSG00000041040)	Ica1l (ENSMUSG00000026018)	Wdr12 (ENSMUSG00000026019)	Carf (ENSMUSG00000026017)	Nbeal1 (ENSMUSG00000073664)	Cyp20a1 (ENSMUSG00000049439)	Abi2 (ENSMUSG00000026782)	Raph1 (ENSMUSG00000026014)	Cd28 (ENSMUSG00000026012)	Ctla4 (ENSMUSG00000026011)	Icos (ENSMUSG00000026009)	Pard3b (ENSMUSG00000052062) #20	Nrp2 (ENSMUSG00000025969) #22	Ino80d (ENSMUSG00000040865)	Ndufs1 (ENSMUSG00000025968)	Eef1b2 (ENSMUSG00000025967)	Cmklr2 (ENSMUSG00000046856)	Zdbf2 (ENSMUSG00000027520)	Adam23 (ENSMUSG00000025964)	Gm39653 (ENSMUSG00000115378)	Dytn (ENSMUSG00000069085)	Mdh1b (ENSMUSG00000025963)	Fastkd2 (ENSMUSG00000025962)	Klf7 (ENSMUSG00000025959)	Creb1 (ENSMUSG00000025958)	Mettl21a (ENSMUSG00000025956)	Ccnyl1 (ENSMUSG00000070871)	Fzd5 (ENSMUSG00000045005)
Ryukyu mouse	MODERN SPECIES		Sumo1 (MGP_CAROLIEiJ_G0014180)	Nop58 (MGP_CAROLIEiJ_G0014181)	Bmpr2 (MGP_CAROLIEiJ_G0014182)	Fam117b (MGP_CAROLIEiJ_G0014183)	MGP_CAROLIEiJ_G0014184	MGP_CAROLIEiJ_G0014185	Carf (MGP_CAROLIEiJ_G0014186)	Nbeal1 (MGP_CAROLIEiJ_G0014187)	Cyp20a1 (MGP_CAROLIEiJ_G0014188)	Abi2 (MGP_CAROLIEiJ_G0014189)	Raph1 (MGP_CAROLIEiJ_G0014190)	Cd28 (MGP_CAROLIEiJ_G0014191)	Ctla4 (MGP_CAROLIEiJ_G0014192)	Icos (MGP_CAROLIEiJ_G0014193)	Pard3b (MGP_CAROLIEiJ_G0014194) #20	Nrp2 (MGP_CAROLIEiJ_G0014195) #22	Ino80d (MGP_CAROLIEiJ_G0014196)	Ndufs1 (MGP_CAROLIEiJ_G0014197)	Eef1b2 (MGP_CAROLIEiJ_G0014198)	Cmklr2 (MGP_CAROLIEiJ_G0014199)	Zdbf2 (MGP_CAROLIEiJ_G0014200)	Adam23 (MGP_CAROLIEiJ_G0014201)	Dytn (MGP_CAROLIEiJ_G0014202)	Mdh1b (MGP_CAROLIEiJ_G0014203)	Fastkd2 (MGP_CAROLIEiJ_G0014204)	MGP_CAROLIEiJ_G0014205	Klf7 (MGP_CAROLIEiJ_G0014206)	Creb1 (MGP_CAROLIEiJ_G0014207)	Mettl21a (MGP_CAROLIEiJ_G0014208)	Ccnyl1 (MGP_CAROLIEiJ_G0014209)	Fzd5 (MGP_CAROLIEiJ_G0014210)
Shrew mouse	MODERN SPECIES	18	MGP_PahariEiJ_G0027418	Nop58 (MGP_PahariEiJ_G0027419)	Bmpr2 (MGP_PahariEiJ_G0027420)	Fam117b (MGP_PahariEiJ_G0027421)	MGP_PahariEiJ_G0027422	MGP_PahariEiJ_G0027423	Carf (MGP_PahariEiJ_G0027424)	MGP_PahariEiJ_G0027425	Cyp20a1 (MGP_PahariEiJ_G0027426)	Abi2 (MGP_PahariEiJ_G0027427)	Raph1 (MGP_PahariEiJ_G0027428)	Cd28 (MGP_PahariEiJ_G0027429)	Ctla4 (MGP_PahariEiJ_G0027430)	MGP_PahariEiJ_G0027431	Pard3b (MGP_PahariEiJ_G0027432) #20	Nrp2 (MGP_PahariEiJ_G0027433) #22	Ino80d (MGP_PahariEiJ_G0027434)	MGP_PahariEiJ_G0027435	Eef1b2 (MGP_PahariEiJ_G0027436)	Cmklr2 (MGP_PahariEiJ_G0027437)	Zdbf2 (MGP_PahariEiJ_G0027438)	Adam23 (MGP_PahariEiJ_G0027439)	Dytn (MGP_PahariEiJ_G0027440)	Mdh1b (MGP_PahariEiJ_G0027441)	Fastkd2 (MGP_PahariEiJ_G0027442)	MGP_PahariEiJ_G0027443	Klf7 (MGP_PahariEiJ_G0027444)	Creb1 (MGP_PahariEiJ_G0027445)	Mettl21a (MGP_PahariEiJ_G0027446)	Ccnyl1 (MGP_PahariEiJ_G0027447)	Fzd5 (MGP_PahariEiJ_G0027448)
Rat	MODERN SPECIES	19	Bmpr2 (ENSRNOG00000022196)	ENSRNOG00000066953	LOC301444 (ENSRNOG00000019107)	Fam117b (ENSRNOG00000022066)	Ica1l (ENSRNOG00000017258)	Wdr12 (ENSRNOG00000017340)	Carf (ENSRNOG00000017491)	Nbeal1 (ENSRNOG00000021525)	Cyp20a1 (ENSRNOG00000017631)	Abi2 (ENSRNOG00000017707)	Raph1 (ENSRNOG00000014722)	Cd28 (ENSRNOG00000010283)	Ctla4 (ENSRNOG00000054129)	Icos (ENSRNOG00000046196)	Pard3b (ENSRNOG00000024345) #20	Nrp2 (ENSRNOG00000031232) #22	Rpl37-ps5 (ENSRNOG00000033803)	Ino80d (ENSRNOG00000024272)	Ndufs1 (ENSRNOG00000011849)	Eef1b2 (ENSRNOG00000024186)	Cmklr2 (ENSRNOG00000045532)	Zdbf2 (ENSRNOG00000024114)	Adam23 (ENSRNOG00000012424)	Fam237a (ENSRNOG00000054699)	Dytn (ENSRNOG00000042181)	Mdh1b (ENSRNOG00000012891)	ENSRNOG00000063009	Fastkd2 (ENSRNOG00000023923)	ENSRNOG00000063607	Klf7 (ENSRNOG00000046242)	LOC103690545 (ENSRNOG00000064370)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1322							Nbeal1 (ENSNGAG00000020072)	Cyp20a1 (ENSNGAG00000020232)	Abi2 (ENSNGAG00000012110)	ENSNGAG00000001490	Cd28 (ENSNGAG00000015761)	Ctla4 (ENSNGAG00000019017)	ENSNGAG00000010975	Icos (ENSNGAG00000015325)	Pard3b (ENSNGAG00000019309) #20	Nrp2 (ENSNGAG00000014175) #22	Ino80d (ENSNGAG00000007370)	Ndufs1 (ENSNGAG00000016531)	Eef1b2 (ENSNGAG00000020801)	Cmklr2 (ENSNGAG00000014936)	Zdbf2 (ENSNGAG00000010826)	Adam23 (ENSNGAG00000014933)	Mdh1b (ENSNGAG00000000139)	Fastkd2 (ENSNGAG00000001279)	Klf7 (ENSNGAG00000016561)	Creb1 (ENSNGAG00000018967)	Mettl21a (ENSNGAG00000013752)	ENSNGAG00000014167	Ccnyl1 (ENSNGAG00000004870)	Fzd5 (ENSNGAG00000014954)	Plekhm3 (ENSNGAG00000007962)
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000022745	Nop58 (ENSJJAG00000018213)	Bmpr2 (ENSJJAG00000015151)	Fam117b (ENSJJAG00000019496)	Ica1l (ENSJJAG00000022732)	ENSJJAG00000000724	Carf (ENSJJAG00000014072)	Nbeal1 (ENSJJAG00000023210)	Cyp20a1 (ENSJJAG00000007155)	Abi2 (ENSJJAG00000006918)	ENSJJAG00000023840	Cd28 (ENSJJAG00000001227)	Ctla4 (ENSJJAG00000013112)	Icos (ENSJJAG00000007794)	Pard3b (ENSJJAG00000015271) #20	Nrp2 (ENSJJAG00000016788) #22	Ino80d (ENSJJAG00000018074)	Ndufs1 (ENSJJAG00000013916)	Eef1b2 (ENSJJAG00000004915)	Adam23 (ENSJJAG00000016078)	Dytn (ENSJJAG00000016868)	Mdh1b (ENSJJAG00000010713)	Fastkd2 (ENSJJAG00000000986)	ENSJJAG00000021742	Klf7 (ENSJJAG00000011480)	Creb1 (ENSJJAG00000013846)	ENSJJAG00000023618	Ccnyl1 (ENSJJAG00000024111)	Fzd5 (ENSJJAG00000004014)	Plekhm3 (ENSJJAG00000012116)	ENSJJAG00000021625
Kangaroo rat	MODERN SPECIES	320	Bmpr2 (ENSDORG00000009209)	ENSDORG00000015288	Ica1l (ENSDORG00000015292)	Wdr12 (ENSDORG00000015294)	Carf (ENSDORG00000006614)	Nbeal1 (ENSDORG00000015714)	Cyp20a1 (ENSDORG00000015715)	ENSDORG00000028647	Abi2 (ENSDORG00000028252)	ENSDORG00000007525	Cd28 (ENSDORG00000013428)	Ctla4 (ENSDORG00000008556)	Icos (ENSDORG00000010237)	ENSDORG00000029364	Pard3b (ENSDORG00000014139) #20	ENSDORG00000029450 #22	Ino80d (ENSDORG00000027999)	ENSDORG00000025350	ENSDORG00000023550	Cmklr2 (ENSDORG00000013107)	Adam23 (ENSDORG00000015422)	Dytn (ENSDORG00000028814)	Mdh1b (ENSDORG00000011290)	Fastkd2 (ENSDORG00000011295)	Klf7 (ENSDORG00000009634)	Creb1 (ENSDORG00000012535)	Mettl21a (ENSDORG00000012543)	Ccnyl1 (ENSDORG00000009933)	Fzd5 (ENSDORG00000027490)	ENSDORG00000023690	Plekhm3 (ENSDORG00000029697)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h.g	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Marmotini_b	ANCESTRAL SPECIES	103	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h.g	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Squirrel	MODERN SPECIES	231										ABI2 (ENSSTOG00000015888)	RAPH1 (ENSSTOG00000028594)	CD28 (ENSSTOG00000026213)	CTLA4 (ENSSTOG00000020540)	ICOS (ENSSTOG00000013542)	PARD3B (ENSSTOG00000010207) #20	NRP2 (ENSSTOG00000010229) #22	INO80D (ENSSTOG00000028419)	NDUFS1 (ENSSTOG00000010255)	EEF1B2 (ENSSTOG00000005437)	CMKLR2 (ENSSTOG00000005452)	ZDBF2 (ENSSTOG00000001663)	ADAM23 (ENSSTOG00000024094)	DYTN (ENSSTOG00000019822)	MDH1B (ENSSTOG00000003194)	FASTKD2 (ENSSTOG00000022821)	CPO (ENSSTOG00000013351)	KLF7 (ENSSTOG00000011069)	CREB1 (ENSSTOG00000016482)	METTL21A (ENSSTOG00000016483)	ENSSTOG00000021511	CCNYL1 (ENSSTOG00000016484)
Arctic ground squirrel	MODERN SPECIES	141								CYP20A1 (ENSUPAG00010007092)	ABI2 (ENSUPAG00010007107)	RAPH1 (ENSUPAG00010007232)	ENSUPAG00010007347	CD28 (ENSUPAG00010007360)	CTLA4 (ENSUPAG00010007371)	ICOS (ENSUPAG00010007386)	PARD3B (ENSUPAG00010007426) #20	NRP2 (ENSUPAG00010007567) #22	INO80D (ENSUPAG00010007624)	NDUFS1 (ENSUPAG00010007661)	EEF1B2 (ENSUPAG00010007678)	CMKLR2 (ENSUPAG00010007707)	ZDBF2 (ENSUPAG00010007725)	ADAM23 (ENSUPAG00010007731)	FAM237A (ENSUPAG00010007856)	DYTN (ENSUPAG00010007862)	MDH1B (ENSUPAG00010007886)	FASTKD2 (ENSUPAG00010007916)	CPO (ENSUPAG00010007941)	KLF7 (ENSUPAG00010007967)	CREB1 (ENSUPAG00010007984)	METTL21A (ENSUPAG00010008009)	CCNYL1 (ENSUPAG00010008021)
Alpin marmot	MODERN SPECIES	8	ENSMMMG00000013017	ENSMMMG00000013051	ENSMMMG00000013060	ICA1L (ENSMMMG00000013064)	WDR12 (ENSMMMG00000013110)	CARF (ENSMMMG00000013161)	NBEAL1 (ENSMMMG00000013229)	CYP20A1 (ENSMMMG00000013312)	ABI2 (ENSMMMG00000013329)	ENSMMMG00000013568	CD28 (ENSMMMG00000013599)	CTLA4 (ENSMMMG00000013609)	ICOS (ENSMMMG00000013624)	PARD3B (ENSMMMG00000013680) #20	ENSMMMG00000013911	NRP2 (ENSMMMG00000013924) #22	INO80D (ENSMMMG00000014555)	NDUFS1 (ENSMMMG00000014566)	ENSMMMG00000014596	CMKLR2 (ENSMMMG00000014632)	ZDBF2 (ENSMMMG00000014650)	ADAM23 (ENSMMMG00000014678)	FAM237A (ENSMMMG00000014819)	DYTN (ENSMMMG00000014828)	ENSMMMG00000014844	MDH1B (ENSMMMG00000014852)	FASTKD2 (ENSMMMG00000014857)	CPO (ENSMMMG00000014874)	KLF7 (ENSMMMG00000014897)	CREB1 (ENSMMMG00000014914)	METTL21A (ENSMMMG00000015010)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000362	BMPR2 (ENSSVLG00005000484)	ENSSVLG00005000534	ENSSVLG00005000554	ENSSVLG00005000579	WDR12 (ENSSVLG00005000598)	ENSSVLG00005000686	ENSSVLG00005000784	NBEAL1 (ENSSVLG00005000853)	CYP20A1 (ENSSVLG00005000970)	ABI2 (ENSSVLG00005001071)	CD28 (ENSSVLG00005001473)	CTLA4 (ENSSVLG00005001529)	ICOS (ENSSVLG00005001570)	PARD3B (ENSSVLG00005001789) #20	NRP2 (ENSSVLG00005002141) #22	INO80D (ENSSVLG00005002283)	ENSSVLG00005002396	ENSSVLG00005002606	CMKLR2 (ENSSVLG00005002631)	ENSSVLG00005002653	ADAM23 (ENSSVLG00005002721)	FAM237A (ENSSVLG00005002854)	DYTN (ENSSVLG00005002873)	MDH1B (ENSSVLG00005002924)	FASTKD2 (ENSSVLG00005002985)	CPO (ENSSVLG00005003015)	KLF7 (ENSSVLG00005003049)	CREB1 (ENSSVLG00005003093)	METTL21A (ENSSVLG00005003134)	ENSSVLG00005003181
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000004722	ENSHGLG00000020889	CARF (ENSHGLG00000007326)	ENSHGLG00000037622	NBEAL1 (ENSHGLG00000004471)	CYP20A1 (ENSHGLG00000050312)	ABI2 (ENSHGLG00000007481)	ENSHGLG00000005031	CD28 (ENSHGLG00000037192)	CTLA4 (ENSHGLG00000009115)	ICOS (ENSHGLG00000008777)	ENSHGLG00000043313	ENSHGLG00000016877	ENSHGLG00000048100	PARD3B (ENSHGLG00000004982) #20	NRP2 (ENSHGLG00000010562) #22	ENSHGLG00000049876	INO80D (ENSHGLG00000018537)	NDUFS1 (ENSHGLG00000015179)	EEF1B2 (ENSHGLG00000015147)	ENSHGLG00000045433	CMKLR2 (ENSHGLG00000046982)	ENSHGLG00000044712	ADAM23 (ENSHGLG00000006393)	FAM237A (ENSHGLG00000030355)	ENSHGLG00000005368	MDH1B (ENSHGLG00000004936)	FASTKD2 (ENSHGLG00000004761)	ENSHGLG00000045814	KLF7 (ENSHGLG00000044157)	ENSHGLG00000017319
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00940000158781	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Guinea pig	MODERN SPECIES	13	SUMO1 (ENSCPOG00000039864)	NOP58 (ENSCPOG00000030510)	BMPR2 (ENSCPOG00000009586)	ICA1L (ENSCPOG00000009349)	WDR12 (ENSCPOG00000008824)	CARF (ENSCPOG00000008827)	NBEAL1 (ENSCPOG00000008009)	CYP20A1 (ENSCPOG00000009758)	ABI2 (ENSCPOG00000007562)	RAPH1 (ENSCPOG00000020239)	CD28 (ENSCPOG00000035938)	CTLA4 (ENSCPOG00000019534)	ICOS (ENSCPOG00000030931)	ENSCPOG00000030358	PARD3B (ENSCPOG00000004380) #20	NRP2 (ENSCPOG00000004390) #22	ENSCPOG00000010964	NDUFS1 (ENSCPOG00000005555)	EEF1B2 (ENSCPOG00000014496)	ADAM23 (ENSCPOG00000005871)	MDH1B (ENSCPOG00000005608)	FASTKD2 (ENSCPOG00000005624)	KLF7 (ENSCPOG00000009080)	CREB1 (ENSCPOG00000010778)	METTL21A (ENSCPOG00000034803)	ENSCPOG00000035156	FZD5 (ENSCPOG00000038146)	PLEKHM3 (ENSCPOG00000004119)	CRYGC (ENSCPOG00000000186)	ENSCPOG00000022025	CRYGA (ENSCPOG00000015047)
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a	ENSGT00930000150950.b	ENSGT00390000013916	ENSGT00940000155041	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552	ENSGT00530000063873.A	ENSGT00530000063873.B	ENSGT00390000000801	ENSGT00950000183214.a.b.a.b #20	ENSGT00940000155270 #22	ENSGT00940000157974	ENSGT00940000153514.b	ENSGT00950000183014.f.a.h	ENSGT00940000160642	ENSGT00940000158781	ENSGT00940000162403	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Long-tailed chinchilla	MODERN SPECIES	164	ICA1L (ENSCLAG00000005015)	WDR12 (ENSCLAG00000004491)	CARF (ENSCLAG00000007915)	ENSCLAG00000007700	ENSCLAG00000006700	NBEAL1 (ENSCLAG00000005102)	CYP20A1 (ENSCLAG00000004163)	ENSCLAG00000006025	ENSCLAG00000004760	ABI2 (ENSCLAG00000004021)	ENSCLAG00000003175	CD28 (ENSCLAG00000004670)	CTLA4 (ENSCLAG00000004042)	ICOS (ENSCLAG00000003964)	PARD3B (ENSCLAG00000010240) #20	NRP2 (ENSCLAG00000009120) #22	INO80D (ENSCLAG00000006191)	NDUFS1 (ENSCLAG00000009634)	EEF1B2 (ENSCLAG00000009181)	CMKLR2 (ENSCLAG00000008973)	ENSCLAG00000008490	ATXN3L (ENSCLAG00000005825)	ADAM23 (ENSCLAG00000004674)	DYTN (ENSCLAG00000003705)	MDH1B (ENSCLAG00000003385)	FASTKD2 (ENSCLAG00000007036)	KLF7 (ENSCLAG00000006083)	CREB1 (ENSCLAG00000005853)	METTL21A (ENSCLAG00000005572)	ENSCLAG00000005432	ENSCLAG00000004502
Degu	MODERN SPECIES	57	ENSODEG00000009897	ENSODEG00000011455	WDR12 (ENSODEG00000011602)	CARF (ENSODEG00000011312)	NBEAL1 (ENSODEG00000010440)	CYP20A1 (ENSODEG00000010253)	ENSODEG00000009779	ABI2 (ENSODEG00000009457)	ENSODEG00000013477	CTLA4 (ENSODEG00000009327)	ENSODEG00000010295	ICOS (ENSODEG00000011327)	ENSODEG00000009131	ENSODEG00000010021	PARD3B (ENSODEG00000012523) #20	ENSODEG00000010455 #22	INO80D (ENSODEG00000009769)	ENSODEG00000019630	ENSODEG00000008842	ENSODEG00000009030	ENSODEG00000008974	ENSODEG00000010229	ENSODEG00000019757	ADAM23 (ENSODEG00000011161)	DYTN (ENSODEG00000009029)	MDH1B (ENSODEG00000009494)	FASTKD2 (ENSODEG00000009880)	KLF7 (ENSODEG00000010345)	ENSODEG00000009956	ENSODEG00000009302	CREB1 (ENSODEG00000010264)
Tree shrew	MODERN SPECIES	653														PARD3B (ENSTBEG00000002494) #20	ENSTBEG00000004230	NRP2 (ENSTBEG00000004603) #22