Sarcopterygii	ANCESTRAL SPECIES	293															ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B
Amniota	ANCESTRAL SPECIES	6	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Mammalia	ANCESTRAL SPECIES	6	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Theria	ANCESTRAL SPECIES	5	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT01090000263468	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT01090000260046	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Primates	ANCESTRAL SPECIES	13	ENSGT00940000153534.A	ENSGT01090000263468	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000153534.A	ENSGT01090000263468	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000153534.A	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000156449	ENSGT00390000010308.cb.b #7	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000000685.o.b.a #13	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00390000001455.`b.a #24	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.b.b #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.a	ENSGT00940000155408	ENSGT00940000157249.c
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000156449	ENSGT00390000010308.cb.b #7	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000000685.o.b.a #13	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00390000001455.`b.a #24	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.b.b.a #27	ENSGT00940000160642	ENSGT00950000183014.f.a.g.b.b.b.b ##27	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.a	ENSGT00940000155408
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000156449	ENSGT00390000010308.cb.b #7	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000000685.o.b.a #13	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00390000001455.`b.a #24	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.b.b.a #27	ENSGT00950000183014.f.a.g.b.b.b.b ##27	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.a	ENSGT00940000155408	ENSGT00940000157249.c
Capuchin	MODERN SPECIES	101	ENSCCAG00000026090 #7	FAM117B (ENSCCAG00000031732) #8	ICA1L (ENSCCAG00000027883) #9	WDR12 (ENSCCAG00000005461) #10	CARF (ENSCCAG00000019881) #11	NBEAL1 (ENSCCAG00000021158) #12	ENSCCAG00000031449 #13	CYP20A1 (ENSCCAG00000036341) #14	ABI2 (ENSCCAG00000027705) #15	RAPH1 (ENSCCAG00000029188) #16	ENSCCAG00000031812 #17	CD28 (ENSCCAG00000035864) #18	CTLA4 (ENSCCAG00000029978) #19	ICOS (ENSCCAG00000019210) #20	PARD3B (ENSCCAG00000034949) #21	NRP2 (ENSCCAG00000026361) #22	ENSCCAG00000029458 #23	LSM5 (ENSCCAG00000032792) #24	INO80D (ENSCCAG00000028441) #25	NDUFS1 (ENSCCAG00000021875) #26	ENSCCAG00000033644 #27	ENSCCAG00000029547 #28	ZDBF2 (ENSCCAG00000026606) #29	ADAM23 (ENSCCAG00000031476) #30	FAM237A (ENSCCAG00000025434) #31	DYTN (ENSCCAG00000036386) #32
Bolivian squirrel monkey	MODERN SPECIES	56	ENSSBOG00000016073 #8	ICA1L (ENSSBOG00000032973) #9	WDR12 (ENSSBOG00000015132) #10	CARF (ENSSBOG00000032523) #11	NBEAL1 (ENSSBOG00000032563) #12	ENSSBOG00000030482 #13	CYP20A1 (ENSSBOG00000025384) #14	ABI2 (ENSSBOG00000031443) #15	RAPH1 (ENSSBOG00000036069) #16	ENSSBOG00000030839	CD28 (ENSSBOG00000032327) #18	ENSSBOG00000030167	CTLA4 (ENSSBOG00000034817) #19	ICOS (ENSSBOG00000000744) #20	PARD3B (ENSSBOG00000029267) #21	NRP2 (ENSSBOG00000035290) #22	ENSSBOG00000034794 #24	INO80D (ENSSBOG00000020878) #25	NDUFS1 (ENSSBOG00000028426) #26	ENSSBOG00000036258 ##27	ZDBF2 (ENSSBOG00000011111) #29	ADAM23 (ENSSBOG00000001918) #30	FAM237A (ENSSBOG00000033809) #31	DYTN (ENSSBOG00000026100) #32	MDH1B (ENSSBOG00000029880)	FASTKD2 (ENSSBOG00000029513)	CPO (ENSSBOG00000030310)	ENSSBOG00000027628	ENSSBOG00000018885	CREB1 (ENSSBOG00000034085)	ENSSBOG00000033378
Marmoset	MODERN SPECIES	18	BMPR2 (ENSCJAG00000005066)	FAM117B (ENSCJAG00000047724) #8	ICA1L (ENSCJAG00000005162) #9	WDR12 (ENSCJAG00000005171) #10	CARF (ENSCJAG00000005224) #11	NBEAL1 (ENSCJAG00000031696) #12	ENSCJAG00000081284	CYP20A1 (ENSCJAG00000039360) #14	ABI2 (ENSCJAG00000005399) #15	RAPH1 (ENSCJAG00000005339) #16	CD28 (ENSCJAG00000042321) #18	CTLA4 (ENSCJAG00000005495) #19	ICOS (ENSCJAG00000005516) #20	PARD3B (ENSCJAG00000005521) #21	ENSCJAG00000076910	NRP2 (ENSCJAG00000005577) #22	ENSCJAG00000045767	INO80D (ENSCJAG00000005682) #25	NDUFS1 (ENSCJAG00000005725) #26	ENSCJAG00000005805 #27	CMKLR2 (ENSCJAG00000077852)	ENSCJAG00000079037	ENSCJAG00000085853	ZDBF2 (ENSCJAG00000005812) #29	ADAM23 (ENSCJAG00000005821) #30	DYTN (ENSCJAG00000005926) #32	MDH1B (ENSCJAG00000005953)	FASTKD2 (ENSCJAG00000005971)	ENSCJAG00000073541	CPO (ENSCJAG00000005991)	ENSCJAG00000006023
Mas night monkey	MODERN SPECIES	357	FAM117B (ENSANAG00000032237) #8	ICA1L (ENSANAG00000036249) #9	WDR12 (ENSANAG00000030065) #10	CARF (ENSANAG00000032508) #11	NBEAL1 (ENSANAG00000029269) #12	ENSANAG00000023562 #13	CYP20A1 (ENSANAG00000026608) #14	ABI2 (ENSANAG00000037183) #15	RAPH1 (ENSANAG00000037926) #16	CD28 (ENSANAG00000027528) #18	CTLA4 (ENSANAG00000027709) #19	ICOS (ENSANAG00000027294) #20	ENSANAG00000037162	ENSANAG00000037079	PARD3B (ENSANAG00000024698) #21	NRP2 (ENSANAG00000033490) #22	ENSANAG00000037758 #24	INO80D (ENSANAG00000029568) #25	NDUFS1 (ENSANAG00000020079) #26	ENSANAG00000024356 #27	ZDBF2 (ENSANAG00000020305) #29	ADAM23 (ENSANAG00000035087) #30	FAM237A (ENSANAG00000024386) #31	DYTN (ENSANAG00000031986) #32	MDH1B (ENSANAG00000008683)	FASTKD2 (ENSANAG00000034550)	CPO (ENSANAG00000023194)	KLF7 (ENSANAG00000036279)	CREB1 (ENSANAG00000025888)	ENSANAG00000020586	CCNYL1 (ENSANAG00000020995)
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.a.b ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.a.b ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00950000183046.a.a #8	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.a.b.a.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00950000183046.a.a #8	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.a.b.a.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Pan	ANCESTRAL SPECIES	12	ENSGT00950000183046.a.a #8	ENSGT00610000087446	ENSGT00390000015889.j	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.d	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.a.b.a.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000040928	ENSPTRG00000044806	ICA1L (ENSPTRG00000012822) #9	WDR12 (ENSPTRG00000012823) #10	CARF (ENSPTRG00000012824) #11	NBEAL1 (ENSPTRG00000012828) #12	ENSPTRG00000012829 #14	ABI2 (ENSPTRG00000012830) #15	RAPH1 (ENSPTRG00000012831) #16	ENSPTRG00000043246	CD28 (ENSPTRG00000012833) #18	ENSPTRG00000051964	CTLA4 (ENSPTRG00000044793) #19	ICOS (ENSPTRG00000012837) #20	PARD3B (ENSPTRG00000012838) #21	NRP2 (ENSPTRG00000012839) #22	INO80D (ENSPTRG00000012841) #25	NDUFS1 (ENSPTRG00000012842) #26	EEF1B2 (ENSPTRG00000049619) ##27	CMKLR2 (ENSPTRG00000012844)	ENSPTRG00000052002	ZDBF2 (ENSPTRG00000029052) #29	ADAM23 (ENSPTRG00000012846) #30	FAM237A (ENSPTRG00000045763) #31	DYTN (ENSPTRG00000042355) #32	MDH1B (ENSPTRG00000012847)	FASTKD2 (ENSPTRG00000012848)	CPO (ENSPTRG00000012849)	KLF7 (ENSPTRG00000012850)	CREB1 (ENSPTRG00000043959)	METTL21A (ENSPTRG00000012852)
Bonobo	MODERN SPECIES	15	BMPR2 (ENSPPAG00000017269)	FAM117B (ENSPPAG00000041596) #8	ENSPPAG00000027947	ICA1L (ENSPPAG00000037623) #9	ENSPPAG00000033697 #10	CARF (ENSPPAG00000042960) #11	NBEAL1 (ENSPPAG00000040934) #12	CYP20A1 (ENSPPAG00000040724) #14	ABI2 (ENSPPAG00000030582) #15	RAPH1 (ENSPPAG00000024317) #16	ENSPPAG00000032675	CD28 (ENSPPAG00000034998) #18	CTLA4 (ENSPPAG00000041661) #19	ICOS (ENSPPAG00000037117) #20	PARD3B (ENSPPAG00000033958) #21	NRP2 (ENSPPAG00000041062) #22	ENSPPAG00000040957	INO80D (ENSPPAG00000017120) #25	NDUFS1 (ENSPPAG00000032284) #26	ENSPPAG00000033754 ##27	ENSPPAG00000031391	ZDBF2 (ENSPPAG00000038901) #29	ADAM23 (ENSPPAG00000030147) #30	FAM237A (ENSPPAG00000028915) #31	DYTN (ENSPPAG00000008787) #32	ENSPPAG00000031338	FASTKD2 (ENSPPAG00000021300)	CPO (ENSPPAG00000033230)	KLF7 (ENSPPAG00000035305)	CREB1 (ENSPPAG00000042817)	METTL21A (ENSPPAG00000041715)
Human	MODERN SPECIES	11	NOP58 (ENSG00000055044)	BMPR2 (ENSG00000204217)	ENSG00000289490	FAM117B (ENSG00000138439) #8	ICA1L (ENSG00000163596) #9	WDR12 (ENSG00000138442) #10	CARF (ENSG00000138380) #11	NBEAL1 (ENSG00000144426) #12	CYP20A1 (ENSG00000119004) #14	ABI2 (ENSG00000138443) #15	RAPH1 (ENSG00000173166) #16	CD28 (ENSG00000178562) #18	CTLA4 (ENSG00000163599) #19	ICOS (ENSG00000163600) #20	PARD3B (ENSG00000116117) #21	NRP2 (ENSG00000118257) #22	INO80D (ENSG00000114933) #25	NDUFS1 (ENSG00000023228) #26	EEF1B2 (ENSG00000114942) ##27	CMKLR2 (ENSG00000183671)	ZDBF2 (ENSG00000204186) #29	ADAM23 (ENSG00000114948) #30	FAM237A (ENSG00000235118) #31	DYTN (ENSG00000232125) #32	MDH1B (ENSG00000138400)	FASTKD2 (ENSG00000118246)	CPO (ENSG00000144410)	KLF7 (ENSG00000118263)	CREB1 (ENSG00000118260)	METTL21A (ENSG00000144401)	CCNYL1 (ENSG00000163249)
Gorilla	MODERN SPECIES	15	ENSGGOG00000014813 #8	ENSGGOG00000016194	ICA1L (ENSGGOG00000017038) #9	WDR12 (ENSGGOG00000026073) #10	ENSGGOG00000036442 #11	NBEAL1 (ENSGGOG00000015453) #12	CYP20A1 (ENSGGOG00000007044) #14	ABI2 (ENSGGOG00000016384) #15	RAPH1 (ENSGGOG00000016399) #16	ENSGGOG00000023735	CD28 (ENSGGOG00000041735) #18	ENSGGOG00000039900	CTLA4 (ENSGGOG00000007961) #19	ICOS (ENSGGOG00000014097) #20	PARD3B (ENSGGOG00000034911) #21	NRP2 (ENSGGOG00000009537) #22	INO80D (ENSGGOG00000015570) #25	NDUFS1 (ENSGGOG00000001513) #26	EEF1B2 (ENSGGOG00000007002) ##27	ENSGGOG00000042195	ZDBF2 (ENSGGOG00000023142) #29	ENSGGOG00000024971	ADAM23 (ENSGGOG00000012509) #30	FAM237A (ENSGGOG00000037017) #31	DYTN (ENSGGOG00000027242) #32	MDH1B (ENSGGOG00000002059)	FASTKD2 (ENSGGOG00000002062)	CPO (ENSGGOG00000016053)	KLF7 (ENSGGOG00000009338)	CREB1 (ENSGGOG00000024394)	METTL21A (ENSGGOG00000015815)
Orangutan	MODERN SPECIES	15	NOP58 (ENSPPYG00000013084)	BMPR2 (ENSPPYG00000013085)	FAM117B (ENSPPYG00000037197) #8	ENSPPYG00000034941	ICA1L (ENSPPYG00000013088) #9	WDR12 (ENSPPYG00000040830) #10	CARF (ENSPPYG00000013090) #11	NBEAL1 (ENSPPYG00000013092) #12	CYP20A1 (ENSPPYG00000013093) #14	ABI2 (ENSPPYG00000013094) #15	RAPH1 (ENSPPYG00000013096) #16	CD28 (ENSPPYG00000039922) #18	CTLA4 (ENSPPYG00000036623) #19	ICOS (ENSPPYG00000013100) #20	PARD3B (ENSPPYG00000013101) #21	NRP2 (ENSPPYG00000013102) #22	INO80D (ENSPPYG00000013104) #25	ENSPPYG00000038957	NDUFS1 (ENSPPYG00000013106) #26	EEF1B2 (ENSPPYG00000013107) ##27	CMKLR2 (ENSPPYG00000013108)	ZDBF2 (ENSPPYG00000013109) #29	ADAM23 (ENSPPYG00000013110) #30	FAM237A (ENSPPYG00000036282) #31	DYTN (ENSPPYG00000031262) #32	MDH1B (ENSPPYG00000013111)	FASTKD2 (ENSPPYG00000013112)	CPO (ENSPPYG00000013113)	KLF7 (ENSPPYG00000013114)	CREB1 (ENSPPYG00000013115)	METTL21A (ENSPPYG00000013116)
Gibbon	MODERN SPECIES	14	WDR12 (ENSNLEG00000007018) #10	CARF (ENSNLEG00000007026) #11	NBEAL1 (ENSNLEG00000007032) #12	ENSNLEG00000029450	CYP20A1 (ENSNLEG00000035097) #14	ENSNLEG00000007043 #15	RAPH1 (ENSNLEG00000007048) #16	ENSNLEG00000030127	ENSNLEG00000035533	ENSNLEG00000029125	CD28 (ENSNLEG00000007057) #18	CTLA4 (ENSNLEG00000007059) #19	ICOS (ENSNLEG00000007065) #20	ENSNLEG00000007066 #21	ENSNLEG00000036209 #21	NRP2 (ENSNLEG00000007071) #22	INO80D (ENSNLEG00000032256) #25	NDUFS1 (ENSNLEG00000007090) #26	ENSNLEG00000007098 ##27	ENSNLEG00000033131	ZDBF2 (ENSNLEG00000007100) #29	ADAM23 (ENSNLEG00000007102) #30	FAM237A (ENSNLEG00000007112) #31	DYTN (ENSNLEG00000007113) #32	MDH1B (ENSNLEG00000007114)	FASTKD2 (ENSNLEG00000007116)	CPO (ENSNLEG00000007121)	KLF7 (ENSNLEG00000035258)	CREB1 (ENSNLEG00000007124)	METTL21A (ENSNLEG00000007129)	CCNYL1 (ENSNLEG00000007131)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408	ENSGT00940000157249
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552.b #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a.b	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Pig-tailed macaque	MODERN SPECIES	409	FAM117B (ENSMNEG00000033073) #8	ICA1L (ENSMNEG00000039428) #9	ENSMNEG00000027411 #10	CARF (ENSMNEG00000033105) #11	NBEAL1 (ENSMNEG00000044041) #12	CYP20A1 (ENSMNEG00000045164) #14	ABI2 (ENSMNEG00000028519) #15	RAPH1 (ENSMNEG00000030823) #16	ENSMNEG00000036304	CD28 (ENSMNEG00000033642) #18	ENSMNEG00000030427	CTLA4 (ENSMNEG00000043834) #19	ICOS (ENSMNEG00000029598) #20	PARD3B (ENSMNEG00000040103) #21	ENSMNEG00000031020	NRP2 (ENSMNEG00000039082) #22	INO80D (ENSMNEG00000032459) #25	NDUFS1 (ENSMNEG00000032822) #26	ENSMNEG00000030060 ##27	ZDBF2 (ENSMNEG00000031863) #29	ENSMNEG00000028225	ADAM23 (ENSMNEG00000027959) #30	FAM237A (ENSMNEG00000032870) #31	DYTN (ENSMNEG00000038040) #32	MDH1B (ENSMNEG00000043559)	FASTKD2 (ENSMNEG00000043091)	CPO (ENSMNEG00000008835)	KLF7 (ENSMNEG00000027996)	CREB1 (ENSMNEG00000030274)	METTL21A (ENSMNEG00000034465)	CCNYL1 (ENSMNEG00000035559)
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000154319.u.b.a.b	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552.b #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b.a
Rhesus	MODERN SPECIES	3	FAM117B (ENSMMUG00000021152) #8	ICA1L (ENSMMUG00000017364) #9	ENSMMUG00000059397	WDR12 (ENSMMUG00000043068) #10	CARF (ENSMMUG00000006418) #11	NBEAL1 (ENSMMUG00000006420) #12	CYP20A1 (ENSMMUG00000005971) #14	ABI2 (ENSMMUG00000000312) #15	RAPH1 (ENSMMUG00000000314) #16	CD28 (ENSMMUG00000057214) #18	CTLA4 (ENSMMUG00000015903) #19	ICOS (ENSMMUG00000002648) #20	ENSMMUG00000052080	PARD3B (ENSMMUG00000014814) #21	ENSMMUG00000055410	NRP2 (ENSMMUG00000020052) #22	INO80D (ENSMMUG00000001053) #25	ENSMMUG00000054550	NDUFS1 (ENSMMUG00000016788) #26	EEF1B2 (ENSMMUG00000001054) ##27	CMKLR2 (ENSMMUG00000008334)	ZDBF2 (ENSMMUG00000031276) #29	ADAM23 (ENSMMUG00000011641) #30	FAM237A (ENSMMUG00000052987) #31	DYTN (ENSMMUG00000048288) #32	MDH1B (ENSMMUG00000017734)	FASTKD2 (ENSMMUG00000017735)	CPO (ENSMMUG00000063052)	ENSMMUG00000051957	KLF7 (ENSMMUG00000000190)	CREB1 (ENSMMUG00000022601)
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000055750	ENSMFAG00000048371	ENSMFAG00000044326 #10	CARF (ENSMFAG00000042636) #11	NBEAL1 (ENSMFAG00000032529) #12	ENSMFAG00000065796	CYP20A1 (ENSMFAG00000036924) #14	ENSMFAG00000048556	ABI2 (ENSMFAG00000031286) #15	ENSMFAG00000003148 #16	ENSMFAG00000062324 #16	CD28 (ENSMFAG00000003864) #18	CTLA4 (ENSMFAG00000004047) #19	ICOS (ENSMFAG00000053159) #20	PARD3B (ENSMFAG00000043904) #21	NRP2 (ENSMFAG00000038385) #22	ENSMFAG00000053377	INO80D (ENSMFAG00000001629) #25	NDUFS1 (ENSMFAG00000039201) #26	ENSMFAG00000038364 ##27	CMKLR2 (ENSMFAG00000013528)	ZDBF2 (ENSMFAG00000044616) #29	ADAM23 (ENSMFAG00000030094) #30	FAM237A (ENSMFAG00000031105) #31	DYTN (ENSMFAG00000044098) #32	MDH1B (ENSMFAG00000035811)	ENSMFAG00000049460	FASTKD2 (ENSMFAG00000033471)	CPO (ENSMFAG00000062349)	KLF7 (ENSMFAG00000039083)	ENSMFAG00000041805
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000154319.u.b.a.b	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Olive baboon	MODERN SPECIES	1	BMPR2 (ENSPANG00000006512)	ENSPANG00000042529	FAM117B (ENSPANG00000009087) #8	ICA1L (ENSPANG00000017467) #9	ENSPANG00000008983 #10	ENSPANG00000008982 #11	NBEAL1 (ENSPANG00000000692) #12	CYP20A1 (ENSPANG00000002439) #14	ABI2 (ENSPANG00000023238) #15	RAPH1 (ENSPANG00000018186) #16	CD28 (ENSPANG00000011488) #18	CTLA4 (ENSPANG00000007100) #19	ICOS (ENSPANG00000010251) #20	ENSPANG00000042490	PARD3B (ENSPANG00000017315) #21	NRP2 (ENSPANG00000011487) #22	INO80D (ENSPANG00000005753) #25	NDUFS1 (ENSPANG00000019101) #26	ENSPANG00000011248 ##27	CMKLR2 (ENSPANG00000007301)	ZDBF2 (ENSPANG00000023236) #29	ENSPANG00000032033	ADAM23 (ENSPANG00000025872) #30	FAM237A (ENSPANG00000032174) #31	DYTN (ENSPANG00000011028) #32	MDH1B (ENSPANG00000022792)	ENSPANG00000043039	FASTKD2 (ENSPANG00000012835)	CPO (ENSPANG00000005004)	KLF7 (ENSPANG00000005240)	CREB1 (ENSPANG00000009083)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000154319.u.b.a.b	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00950000182810.A.a.a.lb.d	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408
Sooty mangabey	MODERN SPECIES	570	BMPR2 (ENSCATG00000033192)	ENSCATG00000033526	FAM117B (ENSCATG00000033570) #8	ICA1L (ENSCATG00000036911) #9	ENSCATG00000035496 #10	CARF (ENSCATG00000035061) #11	NBEAL1 (ENSCATG00000036478) #12	CYP20A1 (ENSCATG00000034415) #14	ABI2 (ENSCATG00000038300) #15	RAPH1 (ENSCATG00000044686) #16	ENSCATG00000043923	CD28 (ENSCATG00000043017) #18	CTLA4 (ENSCATG00000036235) #19	ICOS (ENSCATG00000043591) #20	PARD3B (ENSCATG00000022284) #21	NRP2 (ENSCATG00000032051) #22	INO80D (ENSCATG00000044654) #25	NDUFS1 (ENSCATG00000037259) #26	ENSCATG00000037736 ##27	ZDBF2 (ENSCATG00000037091) #29	ENSCATG00000037624	ADAM23 (ENSCATG00000043626) #30	FAM237A (ENSCATG00000036777) #31	DYTN (ENSCATG00000035275) #32	MDH1B (ENSCATG00000035467)	FASTKD2 (ENSCATG00000038647)	CPO (ENSCATG00000043384)	KLF7 (ENSCATG00000041615)	CREB1 (ENSCATG00000037133)	METTL21A (ENSCATG00000041598)	CCNYL1 (ENSCATG00000037115)
Drill	MODERN SPECIES	1089						NBEAL1 (ENSMLEG00000032708) #12	CYP20A1 (ENSMLEG00000034377) #14	ABI2 (ENSMLEG00000040577) #15	RAPH1 (ENSMLEG00000033969) #16	ENSMLEG00000004995	CD28 (ENSMLEG00000037603) #18	CTLA4 (ENSMLEG00000037639) #19	ICOS (ENSMLEG00000007807) #20	PARD3B (ENSMLEG00000031270) #21	ENSMLEG00000040986	NRP2 (ENSMLEG00000035732) #22	INO80D (ENSMLEG00000039669) #25
Vervet Monkey	MODERN SPECIES	1	NOP58 (ENSCSAG00000010496)	BMPR2 (ENSCSAG00000010485)	FAM117B (ENSCSAG00000010474) #8	ICA1L (ENSCSAG00000010466) #9	ENSCSAG00000010442 #10	CARF (ENSCSAG00000010380) #11	NBEAL1 (ENSCSAG00000010364) #12	CYP20A1 (ENSCSAG00000010341) #14	ABI2 (ENSCSAG00000010327) #15	RAPH1 (ENSCSAG00000010318) #16	CD28 (ENSCSAG00000010308) #18	ENSCSAG00000010293	CTLA4 (ENSCSAG00000010288) #19	ICOS (ENSCSAG00000010281) #20	PARD3B (ENSCSAG00000010270) #21	NRP2 (ENSCSAG00000010258) #22	INO80D (ENSCSAG00000010251) #25	NDUFS1 (ENSCSAG00000010247) #26	ENSCSAG00000010238 ##27	CMKLR2 (ENSCSAG00000018769)	ZDBF2 (ENSCSAG00000010233) #29	ENSCSAG00000010220	ADAM23 (ENSCSAG00000010198) #30	DYTN (ENSCSAG00000010181) #32	MDH1B (ENSCSAG00000010163)	FASTKD2 (ENSCSAG00000010158)	CPO (ENSCSAG00000010143)	KLF7 (ENSCSAG00000010117)	CREB1 (ENSCSAG00000010111)	METTL21A (ENSCSAG00000010107)	CCNYL1 (ENSCSAG00000010093)
Rhinopithecus	ANCESTRAL SPECIES	73	ENSGT00390000008128.c.a.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b.m.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153052.c.b.a.a.a.a.a.a.a.a	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.a.a ##27	ENSGT00940000160642	ENSGT00390000015060.n	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b.c	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235.g.b	ENSGT00940000155408	ENSGT00940000157249
Black snub-nosed monkey	MODERN SPECIES	1164															PARD3B (ENSRBIG00000039853) #21	NRP2 (ENSRBIG00000035417) #22	INO80D (ENSRBIG00000044868) #25	NDUFS1 (ENSRBIG00000020611) #26	ENSRBIG00000040112 ##27	ENSRBIG00000031452	ZDBF2 (ENSRBIG00000033928) #29	ADAM23 (ENSRBIG00000032092) #30	FAM237A (ENSRBIG00000033114) #31	DYTN (ENSRBIG00000028505) #32	ENSRBIG00000025761	FASTKD2 (ENSRBIG00000039778)	CPO (ENSRBIG00000037719)	KLF7 (ENSRBIG00000040855)
Golden snub-nosed monkey	MODERN SPECIES	2758				CARF (ENSRROG00000045180) #11	NBEAL1 (ENSRROG00000015491) #12	CYP20A1 (ENSRROG00000040044) #14	ABI2 (ENSRROG00000040959) #15	RAPH1 (ENSRROG00000010278) #16	ENSRROG00000006311	ENSRROG00000034411	CD28 (ENSRROG00000043826) #18	ENSRROG00000034095	CTLA4 (ENSRROG00000028565) #19	ICOS (ENSRROG00000038288) #20	PARD3B (ENSRROG00000013717) #21	NRP2 (ENSRROG00000040911) #22	INO80D (ENSRROG00000003571) #25	NDUFS1 (ENSRROG00000033953) #26	ENSRROG00000041925 ##27	CMKLR2 (ENSRROG00000015659)	ENSRROG00000038360	ZDBF2 (ENSRROG00000032109) #29	ADAM23 (ENSRROG00000036437) #30
Tarsier	MODERN SPECIES	4878																NRP2 (ENSTSYG00000033080) #22	INO80D (ENSTSYG00000030622) #25	NDUFS1 (ENSTSYG00000014545) #26	EEF1B2 (ENSTSYG00000014573) ##27	ZDBF2 (ENSTSYG00000035582) #29
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00940000153534.A	ENSGT00390000001413.b	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Coquerels sifaka	MODERN SPECIES	847															PARD3B (ENSPCOG00000018611) #21	NRP2 (ENSPCOG00000020112) #22	INO80D (ENSPCOG00000024934) #25	ENSPCOG00000018961 #26	EEF1B2 (ENSPCOG00000016289) ##27	ENSPCOG00000013632	ZDBF2 (ENSPCOG00000019226) #29	ADAM23 (ENSPCOG00000023473) #30	FAM237A (ENSPCOG00000018015) #31	DYTN (ENSPCOG00000020018) #32	MDH1B (ENSPCOG00000017083)	FASTKD2 (ENSPCOG00000028714)	CPO (ENSPCOG00000028646)	KLF7 (ENSPCOG00000018231)	CREB1 (ENSPCOG00000021255)	METTL21A (ENSPCOG00000018442)	ENSPCOG00000013286
Greater bamboo lemur	MODERN SPECIES	388											CD28 (ENSPSMG00000022341) #18	ENSPSMG00000022328	CTLA4 (ENSPSMG00000022319) #19	ICOS (ENSPSMG00000022309) #20	PARD3B (ENSPSMG00000022181) #21	NRP2 (ENSPSMG00000021719) #22	INO80D (ENSPSMG00000021497) #25	NDUFS1 (ENSPSMG00000021383) #26	EEF1B2 (ENSPSMG00000021215) ##27	CMKLR2 (ENSPSMG00000021198)
Mouse lemur	MODERN SPECIES	30	FAM117B (ENSMICG00000042296) #8	SLC16A14 (ENSMICG00000010609)	FBXO36 (ENSMICG00000034045)	ICA1L (ENSMICG00000002701) #9	ENSMICG00000044580 #10	CARF (ENSMICG00000011943) #11	ENSMICG00000026752	NBEAL1 (ENSMICG00000003736) #12	CYP20A1 (ENSMICG00000010806) #14	ABI2 (ENSMICG00000048062) #15	RAPH1 (ENSMICG00000001085) #16	CD28 (ENSMICG00000044645) #18	CTLA4 (ENSMICG00000032206) #19	ICOS (ENSMICG00000037046) #20	PARD3B (ENSMICG00000009358) #21	NRP2 (ENSMICG00000009376) #22	ENSMICG00000044290	INO80D (ENSMICG00000010590) #25	NDUFS1 (ENSMICG00000010601) #26	EEF1B2 (ENSMICG00000047922) ##27	ZDBF2 (ENSMICG00000044925) #29	ADAM23 (ENSMICG00000009477) #30	FAM237A (ENSMICG00000044768) #31	DYTN (ENSMICG00000027944) #32	MDH1B (ENSMICG00000009487)	FASTKD2 (ENSMICG00000026515)	CPO (ENSMICG00000015370)	KLF7 (ENSMICG00000037405)	CREB1 (ENSMICG00000009731)	METTL21A (ENSMICG00000009739)	ENSMICG00000009744
Bushbaby	MODERN SPECIES	128	ENSOGAG00000030345	NOP58 (ENSOGAG00000003906)	BMPR2 (ENSOGAG00000007765)	FAM117B (ENSOGAG00000001497) #8	ICA1L (ENSOGAG00000001500) #9	WDR12 (ENSOGAG00000006573) #10	CARF (ENSOGAG00000032187) #11	NBEAL1 (ENSOGAG00000015089) #12	CYP20A1 (ENSOGAG00000015164) #14	ENSOGAG00000033059	ABI2 (ENSOGAG00000011602) #15	RAPH1 (ENSOGAG00000015099) #16	CD28 (ENSOGAG00000012567) #18	CTLA4 (ENSOGAG00000002578) #19	PARD3B (ENSOGAG00000007396) #21	NRP2 (ENSOGAG00000007405) #22	INO80D (ENSOGAG00000005756) #25	NDUFS1 (ENSOGAG00000011226) #26	EEF1B2 (ENSOGAG00000011229) ##27	CMKLR2 (ENSOGAG00000011232)	ENSOGAG00000031172	ZDBF2 (ENSOGAG00000016996) #29	ENSOGAG00000031644	ADAM23 (ENSOGAG00000016997) #30	DYTN (ENSOGAG00000027434) #32	MDH1B (ENSOGAG00000017006)	FASTKD2 (ENSOGAG00000017008)	CPO (ENSOGAG00000017012)	KLF7 (ENSOGAG00000017014)	CREB1 (ENSOGAG00000007121)	METTL21A (ENSOGAG00000007128)
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Tree shrew	MODERN SPECIES	653														PARD3B (ENSTBEG00000002494) #21	ENSTBEG00000004230	NRP2 (ENSTBEG00000004603) #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041.ob #12	ENSGT00940000155041.nb #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Rabbit	MODERN SPECIES	18	ENSOCUG00000006347 #8	ENSOCUG00000030693 #8	ENSOCUG00000010497 #9	WDR12 (ENSOCUG00000002961) #10	CARF (ENSOCUG00000005335) #11	ENSOCUG00000027134	NBEAL1 (ENSOCUG00000008716) #12	CYP20A1 (ENSOCUG00000008054) #14	ENSOCUG00000008062 #15	ENSOCUG00000016722 #16	CD28 (ENSOCUG00000016134) #18	ENSOCUG00000030918	CTLA4 (ENSOCUG00000017274) #19	ICOS (ENSOCUG00000001858) #20	PARD3B (ENSOCUG00000007959) #21	NRP2 (ENSOCUG00000007978) #22	INO80D (ENSOCUG00000014786) #25	ENSOCUG00000009848 ##27	NDUFS1 (ENSOCUG00000012368) #26	CMKLR2 (ENSOCUG00000012384)	ENSOCUG00000024602	ENSOCUG00000009421 #29	ADAM23 (ENSOCUG00000010659) #30	DYTN (ENSOCUG00000021490) #32	MDH1B (ENSOCUG00000010506)	ENSOCUG00000010515	CPO (ENSOCUG00000009806)	KLF7 (ENSOCUG00000009813)	ENSOCUG00000027419	CREB1 (ENSOCUG00000005427)	ENSOCUG00000005431
Pika	MODERN SPECIES	3694														PARD3B (ENSOPRG00000010812) #21	ENSOPRG00000010848	NRP2 (ENSOPRG00000010856) #22
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Muroidea	ANCESTRAL SPECIES	20	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Chinese hamster chok1gshd	MODERN SPECIES	1	Nop58 (ENSCGRG00001017869)	ENSCGRG00001009737	Bmpr2 (ENSCGRG00001020694)	Fam117b (ENSCGRG00001020456) #8	Ica1l (ENSCGRG00001018928) #9	WDR12 (ENSCGRG00001016494) #10	Carf (ENSCGRG00001016848) #11	Nbeal1 (ENSCGRG00001018313) #12	Cyp20a1 (ENSCGRG00001018508) #14	Abi2 (ENSCGRG00001017572) #15	Raph1 (ENSCGRG00001019075) #16	Cd28 (ENSCGRG00001021553) #18	Ctla4 (ENSCGRG00001017244) #19	Icos (ENSCGRG00001016804) #20	Pard3b (ENSCGRG00001023180) #21	Nrp2 (ENSCGRG00001001140) #22	Ino80d (ENSCGRG00001020225) #25	Ndufs1 (ENSCGRG00001018185) #26	Eef1b2 (ENSCGRG00001017503) ##27	Cmklr2 (ENSCGRG00001010463)	Zdbf2 (ENSCGRG00001018156) #29	Adam23 (ENSCGRG00001021362) #30	Gm39653 (ENSCGRG00001017288) #31	Dytn (ENSCGRG00001017611) #32	Mdh1b (ENSCGRG00001017642)	Fastkd2 (ENSCGRG00001020432)	Klf7 (ENSCGRG00001018794)	ENSCGRG00001018665	Creb1 (ENSCGRG00001018838)	Mettl21a (ENSCGRG00001017438)	Ccnyl1 (ENSCGRG00001017467)
Golden Hamster	MODERN SPECIES	640	Nop58 (ENSMAUG00000009734)	Bmpr2 (ENSMAUG00000009115)	Fam117b (ENSMAUG00000017770) #8	Ica1l (ENSMAUG00000013926) #9	Wdr12 (ENSMAUG00000001279) #10	Carf (ENSMAUG00000009693) #11	ENSMAUG00000007926 #12	ENSMAUG00000001805 #12	ENSMAUG00000007020 #14	Abi2 (ENSMAUG00000016724) #15	ENSMAUG00000008616 #16	Cd28 (ENSMAUG00000020132) #18	Ctla4 (ENSMAUG00000017208) #19	Icos (ENSMAUG00000019187) #20	Pard3b (ENSMAUG00000019516) #21	Nrp2 (ENSMAUG00000020662) #22	Ino80d (ENSMAUG00000012087) #25	ENSMAUG00000017015 #26	Eef1b2 (ENSMAUG00000011478) ##27	Cmklr2 (ENSMAUG00000009931)	Zdbf2 (ENSMAUG00000017491) #29	Adam23 (ENSMAUG00000012410) #30	Dytn (ENSMAUG00000021422) #32	Mdh1b (ENSMAUG00000016431)	Fastkd2 (ENSMAUG00000009136)	Klf7 (ENSMAUG00000022037)	Creb1 (ENSMAUG00000018215)	Mettl21a (ENSMAUG00000020877)	Fzd5 (ENSMAUG00000022033)	Plekhm3 (ENSMAUG00000021638)	ENSMAUG00000022028
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Northern American deer mouse	MODERN SPECIES	4	Bmpr2 (ENSPEMG00000022646)	Fam117b (ENSPEMG00000011700) #8	ENSPEMG00000024187	Ica1l (ENSPEMG00000021278) #9	Wdr12 (ENSPEMG00000022189) #10	Carf (ENSPEMG00000020983) #11	ENSPEMG00000028509	Nbeal1 (ENSPEMG00000029402) #12	Cyp20a1 (ENSPEMG00000023627) #14	Abi2 (ENSPEMG00000020443) #15	Raph1 (ENSPEMG00000022086) #16	Cd28 (ENSPEMG00000028537) #18	Ctla4 (ENSPEMG00000020722) #19	Icos (ENSPEMG00000015472) #20	Pard3b (ENSPEMG00000020745) #21	Nrp2 (ENSPEMG00000020944) #22	Ino80d (ENSPEMG00000020652) #25	Ndufs1 (ENSPEMG00000020453) #26	Eef1b2 (ENSPEMG00000016842) ##27	Cmklr2 (ENSPEMG00000000909)	Zdbf2 (ENSPEMG00000029531) #29	Adam23 (ENSPEMG00000020455) #30	Gm39653 (ENSPEMG00000029994) #31	Dytn (ENSPEMG00000020630) #32	Mdh1b (ENSPEMG00000012142)	Fastkd2 (ENSPEMG00000010593)	ENSPEMG00000029845	Klf7 (ENSPEMG00000028836)	Creb1 (ENSPEMG00000012416)	Mettl21a (ENSPEMG00000027520)	Ccnyl1 (ENSPEMG00000022762)
Prairie vole	MODERN SPECIES	354	Daw1 (ENSMOCG00000014056)	Sphkap (ENSMOCG00000010348)	Pid1 (ENSMOCG00000022904)	Dner (ENSMOCG00000020102)	Trip12 (ENSMOCG00000021899)	Fbxo36 (ENSMOCG00000015360)	Slc16a14 (ENSMOCG00000006969)	Nbeal1 (ENSMOCG00000015319) #12	Abi2 (ENSMOCG00000013762) #15	Raph1 (ENSMOCG00000016577) #16	Cd28 (ENSMOCG00000003240) #18	Ctla4 (ENSMOCG00000018484) #19	ENSMOCG00000017292	Icos (ENSMOCG00000008578) #20	Pard3b (ENSMOCG00000021107) #21	Nrp2 (ENSMOCG00000018160) #22	Ino80d (ENSMOCG00000022487) #25	Ndufs1 (ENSMOCG00000018918) #26	Eef1b2 (ENSMOCG00000004803) ##27	Zdbf2 (ENSMOCG00000021962) #29	Adam23 (ENSMOCG00000012227) #30	ENSMOCG00000001238	Dytn (ENSMOCG00000015652) #32	Mdh1b (ENSMOCG00000001314)	Fastkd2 (ENSMOCG00000019859)	ENSMOCG00000008631	Klf7 (ENSMOCG00000009593)	Creb1 (ENSMOCG00000002192)	Mettl21a (ENSMOCG00000017410)	Ccnyl1 (ENSMOCG00000016018)	Fzd5 (ENSMOCG00000013581)
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a	ENSGT00940000162639
Mus	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089.l #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089.l #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00860000135862	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a.c
spretus	MODERN SPECIES		Sumo1 (MGP_SPRETEiJ_G0014987)	Nop58 (MGP_SPRETEiJ_G0014988)	Bmpr2 (MGP_SPRETEiJ_G0014989)	MGP_SPRETEiJ_G0014990 ##8	Ica1l (MGP_SPRETEiJ_G0014991) #9	Wdr12 (MGP_SPRETEiJ_G0014992) #10	Carf (MGP_SPRETEiJ_G0014993) #11	Nbeal1 (MGP_SPRETEiJ_G0014994) #12	Cyp20a1 (MGP_SPRETEiJ_G0014995) #14	Abi2 (MGP_SPRETEiJ_G0014996) #15	Raph1 (MGP_SPRETEiJ_G0014997) #16	Cd28 (MGP_SPRETEiJ_G0014998) #18	Ctla4 (MGP_SPRETEiJ_G0014999) #19	Icos (MGP_SPRETEiJ_G0015000) #20	Pard3b (MGP_SPRETEiJ_G0015001) #21	Nrp2 (MGP_SPRETEiJ_G0015002) #22	Ino80d (MGP_SPRETEiJ_G0015003) #25	Ndufs1 (MGP_SPRETEiJ_G0015004) #26	Eef1b2 (MGP_SPRETEiJ_G0015005) ##27	Cmklr2 (MGP_SPRETEiJ_G0015006)	Zdbf2 (MGP_SPRETEiJ_G0015007) #29	Adam23 (MGP_SPRETEiJ_G0015008) #30	Dytn (MGP_SPRETEiJ_G0015009) #32	Mdh1b (MGP_SPRETEiJ_G0015010)	Fastkd2 (MGP_SPRETEiJ_G0015011)	MGP_SPRETEiJ_G0015012	Klf7 (MGP_SPRETEiJ_G0015013)	Creb1 (MGP_SPRETEiJ_G0015014)	Mettl21a (MGP_SPRETEiJ_G0015015)	Ccnyl1 (MGP_SPRETEiJ_G0015016)	Fzd5 (MGP_SPRETEiJ_G0015017)
Steppe mouse	MODERN SPECIES	44	Fam117b (ENSMSIG00000010018) #8	Ica1l (ENSMSIG00000010027) #9	Wdr12 (ENSMSIG00000010103) #10	Carf (ENSMSIG00000010210) #11	ENSMSIG00000010287	Nbeal1 (ENSMSIG00000010304) #12	Cyp20a1 (ENSMSIG00000010618) #14	ENSMSIG00000010702 #15	Raph1 (ENSMSIG00000010756) #16	Cd28 (ENSMSIG00000011356) #18	ENSMSIG00000011370	Ctla4 (ENSMSIG00000011388) #19	Icos (ENSMSIG00000011424) #20	Pard3b (ENSMSIG00000011469) #21	ENSMSIG00000011764	Nrp2 (ENSMSIG00000011775) #22	Ino80d (ENSMSIG00000012604) #25	Ndufs1 (ENSMSIG00000012674) #26	Eef1b2 (ENSMSIG00000012804) ##27	Cmklr2 (ENSMSIG00000012880)	Zdbf2 (ENSMSIG00000012889) #29	ENSMSIG00000012937	Adam23 (ENSMSIG00000012957) #30	ENSMSIG00000013264	Gm39653 (ENSMSIG00000013270) #31	Dytn (ENSMSIG00000013289) #32
Mouse	MODERN SPECIES		Sumo1 (ENSMUSG00000026021)	Nop58 (ENSMUSG00000026020)	Bmpr2 (ENSMUSG00000067336)	Fam117b (ENSMUSG00000041040) #8	Ica1l (ENSMUSG00000026018) #9	Wdr12 (ENSMUSG00000026019) #10	Carf (ENSMUSG00000026017) #11	Nbeal1 (ENSMUSG00000073664) #12	Cyp20a1 (ENSMUSG00000049439) #14	Abi2 (ENSMUSG00000026782) #15	Raph1 (ENSMUSG00000026014) #16	Cd28 (ENSMUSG00000026012) #18	Ctla4 (ENSMUSG00000026011) #19	Icos (ENSMUSG00000026009) #20	Pard3b (ENSMUSG00000052062) #21	Nrp2 (ENSMUSG00000025969) #22	Ino80d (ENSMUSG00000040865) #25	Ndufs1 (ENSMUSG00000025968) #26	Eef1b2 (ENSMUSG00000025967) ##27	Cmklr2 (ENSMUSG00000046856)	Zdbf2 (ENSMUSG00000027520) #29	Adam23 (ENSMUSG00000025964) #30	Gm39653 (ENSMUSG00000115378) #31	Dytn (ENSMUSG00000069085) #32	Mdh1b (ENSMUSG00000025963)	Fastkd2 (ENSMUSG00000025962)	Klf7 (ENSMUSG00000025959)	Creb1 (ENSMUSG00000025958)	Mettl21a (ENSMUSG00000025956)	Ccnyl1 (ENSMUSG00000070871)	Fzd5 (ENSMUSG00000045005)
Ryukyu mouse	MODERN SPECIES		Sumo1 (MGP_CAROLIEiJ_G0014180)	Nop58 (MGP_CAROLIEiJ_G0014181)	Bmpr2 (MGP_CAROLIEiJ_G0014182)	Fam117b (MGP_CAROLIEiJ_G0014183) #8	MGP_CAROLIEiJ_G0014184 #9	MGP_CAROLIEiJ_G0014185	Carf (MGP_CAROLIEiJ_G0014186) #11	Nbeal1 (MGP_CAROLIEiJ_G0014187) #12	Cyp20a1 (MGP_CAROLIEiJ_G0014188) #14	Abi2 (MGP_CAROLIEiJ_G0014189) #15	Raph1 (MGP_CAROLIEiJ_G0014190) #16	Cd28 (MGP_CAROLIEiJ_G0014191) #18	Ctla4 (MGP_CAROLIEiJ_G0014192) #19	Icos (MGP_CAROLIEiJ_G0014193) #20	Pard3b (MGP_CAROLIEiJ_G0014194) #21	Nrp2 (MGP_CAROLIEiJ_G0014195) #22	Ino80d (MGP_CAROLIEiJ_G0014196) #25	Ndufs1 (MGP_CAROLIEiJ_G0014197) #26	Eef1b2 (MGP_CAROLIEiJ_G0014198) ##27	Cmklr2 (MGP_CAROLIEiJ_G0014199)	Zdbf2 (MGP_CAROLIEiJ_G0014200) #29	Adam23 (MGP_CAROLIEiJ_G0014201) #30	Dytn (MGP_CAROLIEiJ_G0014202) #32	Mdh1b (MGP_CAROLIEiJ_G0014203)	Fastkd2 (MGP_CAROLIEiJ_G0014204)	MGP_CAROLIEiJ_G0014205	Klf7 (MGP_CAROLIEiJ_G0014206)	Creb1 (MGP_CAROLIEiJ_G0014207)	Mettl21a (MGP_CAROLIEiJ_G0014208)	Ccnyl1 (MGP_CAROLIEiJ_G0014209)	Fzd5 (MGP_CAROLIEiJ_G0014210)
Shrew mouse	MODERN SPECIES	18	MGP_PahariEiJ_G0027418	Nop58 (MGP_PahariEiJ_G0027419)	Bmpr2 (MGP_PahariEiJ_G0027420)	Fam117b (MGP_PahariEiJ_G0027421) #8	MGP_PahariEiJ_G0027422 #9	MGP_PahariEiJ_G0027423 #10	Carf (MGP_PahariEiJ_G0027424) #11	MGP_PahariEiJ_G0027425 #12	Cyp20a1 (MGP_PahariEiJ_G0027426) #14	Abi2 (MGP_PahariEiJ_G0027427) #15	Raph1 (MGP_PahariEiJ_G0027428) #16	Cd28 (MGP_PahariEiJ_G0027429) #18	Ctla4 (MGP_PahariEiJ_G0027430) #19	MGP_PahariEiJ_G0027431 #20	Pard3b (MGP_PahariEiJ_G0027432) #21	Nrp2 (MGP_PahariEiJ_G0027433) #22	Ino80d (MGP_PahariEiJ_G0027434) #25	MGP_PahariEiJ_G0027435 #26	Eef1b2 (MGP_PahariEiJ_G0027436) ##27	Cmklr2 (MGP_PahariEiJ_G0027437)	Zdbf2 (MGP_PahariEiJ_G0027438) #29	Adam23 (MGP_PahariEiJ_G0027439) #30	Dytn (MGP_PahariEiJ_G0027440) #32	Mdh1b (MGP_PahariEiJ_G0027441)	Fastkd2 (MGP_PahariEiJ_G0027442)	MGP_PahariEiJ_G0027443	Klf7 (MGP_PahariEiJ_G0027444)	Creb1 (MGP_PahariEiJ_G0027445)	Mettl21a (MGP_PahariEiJ_G0027446)	Ccnyl1 (MGP_PahariEiJ_G0027447)	Fzd5 (MGP_PahariEiJ_G0027448)
Rat	MODERN SPECIES	19	Bmpr2 (ENSRNOG00000022196)	ENSRNOG00000066953	LOC301444 (ENSRNOG00000019107)	Fam117b (ENSRNOG00000022066) #8	Ica1l (ENSRNOG00000017258) #9	Wdr12 (ENSRNOG00000017340) #10	Carf (ENSRNOG00000017491) #11	Nbeal1 (ENSRNOG00000021525) #12	Cyp20a1 (ENSRNOG00000017631) #14	Abi2 (ENSRNOG00000017707) #15	Raph1 (ENSRNOG00000014722) #16	Cd28 (ENSRNOG00000010283) #18	Ctla4 (ENSRNOG00000054129) #19	Icos (ENSRNOG00000046196) #20	Pard3b (ENSRNOG00000024345) #21	Nrp2 (ENSRNOG00000031232) #22	Rpl37-ps5 (ENSRNOG00000033803)	Ino80d (ENSRNOG00000024272) #25	Ndufs1 (ENSRNOG00000011849) #26	Eef1b2 (ENSRNOG00000024186) ##27	Cmklr2 (ENSRNOG00000045532)	Zdbf2 (ENSRNOG00000024114) #29	Adam23 (ENSRNOG00000012424) #30	Fam237a (ENSRNOG00000054699) #31	Dytn (ENSRNOG00000042181) #32	Mdh1b (ENSRNOG00000012891)	ENSRNOG00000063009	Fastkd2 (ENSRNOG00000023923)	ENSRNOG00000063607	Klf7 (ENSRNOG00000046242)	LOC103690545 (ENSRNOG00000064370)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1322							Nbeal1 (ENSNGAG00000020072) #12	Cyp20a1 (ENSNGAG00000020232) #14	Abi2 (ENSNGAG00000012110) #15	ENSNGAG00000001490 #16	Cd28 (ENSNGAG00000015761) #18	Ctla4 (ENSNGAG00000019017) #19	ENSNGAG00000010975	Icos (ENSNGAG00000015325) #20	Pard3b (ENSNGAG00000019309) #21	Nrp2 (ENSNGAG00000014175) #22	Ino80d (ENSNGAG00000007370) #25	Ndufs1 (ENSNGAG00000016531) #26	Eef1b2 (ENSNGAG00000020801) ##27	Cmklr2 (ENSNGAG00000014936)	Zdbf2 (ENSNGAG00000010826) #29	Adam23 (ENSNGAG00000014933) #30	Mdh1b (ENSNGAG00000000139)	Fastkd2 (ENSNGAG00000001279)	Klf7 (ENSNGAG00000016561)	Creb1 (ENSNGAG00000018967)	Mettl21a (ENSNGAG00000013752)	ENSNGAG00000014167	Ccnyl1 (ENSNGAG00000004870)	Fzd5 (ENSNGAG00000014954)	Plekhm3 (ENSNGAG00000007962)
Lesser Egyptian jerboa	MODERN SPECIES	52	ENSJJAG00000022745	Nop58 (ENSJJAG00000018213)	Bmpr2 (ENSJJAG00000015151)	Fam117b (ENSJJAG00000019496) #8	Ica1l (ENSJJAG00000022732) #9	ENSJJAG00000000724 #10	Carf (ENSJJAG00000014072) #11	Nbeal1 (ENSJJAG00000023210) #12	Cyp20a1 (ENSJJAG00000007155) #14	Abi2 (ENSJJAG00000006918) #15	ENSJJAG00000023840 #16	Cd28 (ENSJJAG00000001227) #18	Ctla4 (ENSJJAG00000013112) #19	Icos (ENSJJAG00000007794) #20	Pard3b (ENSJJAG00000015271) #21	Nrp2 (ENSJJAG00000016788) #22	Ino80d (ENSJJAG00000018074) #25	Ndufs1 (ENSJJAG00000013916) #26	Eef1b2 (ENSJJAG00000004915) ##27	Adam23 (ENSJJAG00000016078) #30	Dytn (ENSJJAG00000016868) #32	Mdh1b (ENSJJAG00000010713)	Fastkd2 (ENSJJAG00000000986)	ENSJJAG00000021742	Klf7 (ENSJJAG00000011480)	Creb1 (ENSJJAG00000013846)	ENSJJAG00000023618	Ccnyl1 (ENSJJAG00000024111)	Fzd5 (ENSJJAG00000004014)	Plekhm3 (ENSJJAG00000012116)	ENSJJAG00000021625
Kangaroo rat	MODERN SPECIES	320	Bmpr2 (ENSDORG00000009209)	ENSDORG00000015288 #8	Ica1l (ENSDORG00000015292) #9	Wdr12 (ENSDORG00000015294) #10	Carf (ENSDORG00000006614) #11	Nbeal1 (ENSDORG00000015714) #12	Cyp20a1 (ENSDORG00000015715) #14	ENSDORG00000028647	Abi2 (ENSDORG00000028252) #15	ENSDORG00000007525 #16	Cd28 (ENSDORG00000013428) #18	Ctla4 (ENSDORG00000008556) #19	Icos (ENSDORG00000010237) #20	ENSDORG00000029364	Pard3b (ENSDORG00000014139) #21	ENSDORG00000029450 #22	Ino80d (ENSDORG00000027999) #25	ENSDORG00000025350 #26	ENSDORG00000023550 #26	Cmklr2 (ENSDORG00000013107)	Adam23 (ENSDORG00000015422) #30	Dytn (ENSDORG00000028814) #32	Mdh1b (ENSDORG00000011290)	Fastkd2 (ENSDORG00000011295)	Klf7 (ENSDORG00000009634)	Creb1 (ENSDORG00000012535)	Mettl21a (ENSDORG00000012543)	Ccnyl1 (ENSDORG00000009933)	Fzd5 (ENSDORG00000027490)	ENSDORG00000023690	Plekhm3 (ENSDORG00000029697)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.g ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Marmotini_b	ANCESTRAL SPECIES	103	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.g ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Squirrel	MODERN SPECIES	231										ABI2 (ENSSTOG00000015888) #15	RAPH1 (ENSSTOG00000028594) #16	CD28 (ENSSTOG00000026213) #18	CTLA4 (ENSSTOG00000020540) #19	ICOS (ENSSTOG00000013542) #20	PARD3B (ENSSTOG00000010207) #21	NRP2 (ENSSTOG00000010229) #22	INO80D (ENSSTOG00000028419) #25	NDUFS1 (ENSSTOG00000010255) #26	EEF1B2 (ENSSTOG00000005437) ##27	CMKLR2 (ENSSTOG00000005452)	ZDBF2 (ENSSTOG00000001663) #29	ADAM23 (ENSSTOG00000024094) #30	DYTN (ENSSTOG00000019822) #32	MDH1B (ENSSTOG00000003194)	FASTKD2 (ENSSTOG00000022821)	CPO (ENSSTOG00000013351)	KLF7 (ENSSTOG00000011069)	CREB1 (ENSSTOG00000016482)	METTL21A (ENSSTOG00000016483)	ENSSTOG00000021511	CCNYL1 (ENSSTOG00000016484)
Arctic ground squirrel	MODERN SPECIES	141								CYP20A1 (ENSUPAG00010007092) #14	ABI2 (ENSUPAG00010007107) #15	RAPH1 (ENSUPAG00010007232) #16	ENSUPAG00010007347	CD28 (ENSUPAG00010007360) #18	CTLA4 (ENSUPAG00010007371) #19	ICOS (ENSUPAG00010007386) #20	PARD3B (ENSUPAG00010007426) #21	NRP2 (ENSUPAG00010007567) #22	INO80D (ENSUPAG00010007624) #25	NDUFS1 (ENSUPAG00010007661) #26	EEF1B2 (ENSUPAG00010007678) ##27	CMKLR2 (ENSUPAG00010007707)	ZDBF2 (ENSUPAG00010007725) #29	ADAM23 (ENSUPAG00010007731) #30	FAM237A (ENSUPAG00010007856) #31	DYTN (ENSUPAG00010007862) #32	MDH1B (ENSUPAG00010007886)	FASTKD2 (ENSUPAG00010007916)	CPO (ENSUPAG00010007941)	KLF7 (ENSUPAG00010007967)	CREB1 (ENSUPAG00010007984)	METTL21A (ENSUPAG00010008009)	CCNYL1 (ENSUPAG00010008021)
Alpin marmot	MODERN SPECIES	8	ENSMMMG00000013017	ENSMMMG00000013051 #8	ENSMMMG00000013060 #8	ICA1L (ENSMMMG00000013064) #9	WDR12 (ENSMMMG00000013110) #10	CARF (ENSMMMG00000013161) #11	NBEAL1 (ENSMMMG00000013229) #12	CYP20A1 (ENSMMMG00000013312) #14	ABI2 (ENSMMMG00000013329) #15	ENSMMMG00000013568 #16	CD28 (ENSMMMG00000013599) #18	CTLA4 (ENSMMMG00000013609) #19	ICOS (ENSMMMG00000013624) #20	PARD3B (ENSMMMG00000013680) #21	ENSMMMG00000013911	NRP2 (ENSMMMG00000013924) #22	INO80D (ENSMMMG00000014555) #25	NDUFS1 (ENSMMMG00000014566) #26	ENSMMMG00000014596 ##27	CMKLR2 (ENSMMMG00000014632)	ZDBF2 (ENSMMMG00000014650) #29	ADAM23 (ENSMMMG00000014678) #30	FAM237A (ENSMMMG00000014819) #31	DYTN (ENSMMMG00000014828) #32	ENSMMMG00000014844	MDH1B (ENSMMMG00000014852)	FASTKD2 (ENSMMMG00000014857)	CPO (ENSMMMG00000014874)	KLF7 (ENSMMMG00000014897)	CREB1 (ENSMMMG00000014914)	METTL21A (ENSMMMG00000015010)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000362	BMPR2 (ENSSVLG00005000484)	ENSSVLG00005000534 #8	ENSSVLG00005000554	ENSSVLG00005000579 #9	WDR12 (ENSSVLG00005000598) #10	ENSSVLG00005000686 #11	ENSSVLG00005000784	NBEAL1 (ENSSVLG00005000853) #12	CYP20A1 (ENSSVLG00005000970) #14	ABI2 (ENSSVLG00005001071) #15	CD28 (ENSSVLG00005001473) #18	CTLA4 (ENSSVLG00005001529) #19	ICOS (ENSSVLG00005001570) #20	PARD3B (ENSSVLG00005001789) #21	NRP2 (ENSSVLG00005002141) #22	INO80D (ENSSVLG00005002283) #25	ENSSVLG00005002396 #26	ENSSVLG00005002606 ##27	CMKLR2 (ENSSVLG00005002631)	ENSSVLG00005002653 #29	ADAM23 (ENSSVLG00005002721) #30	FAM237A (ENSSVLG00005002854) #31	DYTN (ENSSVLG00005002873) #32	MDH1B (ENSSVLG00005002924)	FASTKD2 (ENSSVLG00005002985)	CPO (ENSSVLG00005003015)	KLF7 (ENSSVLG00005003049)	CREB1 (ENSSVLG00005003093)	METTL21A (ENSSVLG00005003134)	ENSSVLG00005003181
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000004722	ENSHGLG00000020889	CARF (ENSHGLG00000007326) #11	ENSHGLG00000037622	NBEAL1 (ENSHGLG00000004471) #12	CYP20A1 (ENSHGLG00000050312) #14	ABI2 (ENSHGLG00000007481) #15	ENSHGLG00000005031 #16	CD28 (ENSHGLG00000037192) #18	CTLA4 (ENSHGLG00000009115) #19	ICOS (ENSHGLG00000008777) #20	ENSHGLG00000043313	ENSHGLG00000016877	ENSHGLG00000048100	PARD3B (ENSHGLG00000004982) #21	NRP2 (ENSHGLG00000010562) #22	ENSHGLG00000049876	INO80D (ENSHGLG00000018537) #25	NDUFS1 (ENSHGLG00000015179) #26	EEF1B2 (ENSHGLG00000015147) ##27	ENSHGLG00000045433	CMKLR2 (ENSHGLG00000046982)	ENSHGLG00000044712 #29	ADAM23 (ENSHGLG00000006393) #30	FAM237A (ENSHGLG00000030355) #31	ENSHGLG00000005368	MDH1B (ENSHGLG00000004936)	FASTKD2 (ENSHGLG00000004761)	ENSHGLG00000045814	KLF7 (ENSHGLG00000044157)	ENSHGLG00000017319
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Guinea pig	MODERN SPECIES	13	SUMO1 (ENSCPOG00000039864)	NOP58 (ENSCPOG00000030510)	BMPR2 (ENSCPOG00000009586)	ICA1L (ENSCPOG00000009349) #9	WDR12 (ENSCPOG00000008824) #10	CARF (ENSCPOG00000008827) #11	NBEAL1 (ENSCPOG00000008009) #12	CYP20A1 (ENSCPOG00000009758) #14	ABI2 (ENSCPOG00000007562) #15	RAPH1 (ENSCPOG00000020239) #16	CD28 (ENSCPOG00000035938) #18	CTLA4 (ENSCPOG00000019534) #19	ICOS (ENSCPOG00000030931) #20	ENSCPOG00000030358	PARD3B (ENSCPOG00000004380) #21	NRP2 (ENSCPOG00000004390) #22	ENSCPOG00000010964 #25	NDUFS1 (ENSCPOG00000005555) #26	EEF1B2 (ENSCPOG00000014496) ##27	ADAM23 (ENSCPOG00000005871) #30	MDH1B (ENSCPOG00000005608)	FASTKD2 (ENSCPOG00000005624)	KLF7 (ENSCPOG00000009080)	CREB1 (ENSCPOG00000010778)	METTL21A (ENSCPOG00000034803)	ENSCPOG00000035156	FZD5 (ENSCPOG00000038146)	PLEKHM3 (ENSCPOG00000004119)	CRYGC (ENSCPOG00000000186)	ENSCPOG00000022025	CRYGA (ENSCPOG00000015047)
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00860000133854	ENSGT00940000154319.v	ENSGT00940000153534.A.t.a	ENSGT00940000156449	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639	ENSGT00940000159743	ENSGT00940000159232.h.b
Long-tailed chinchilla	MODERN SPECIES	164	ICA1L (ENSCLAG00000005015) #9	WDR12 (ENSCLAG00000004491) #10	CARF (ENSCLAG00000007915) #11	ENSCLAG00000007700	ENSCLAG00000006700	NBEAL1 (ENSCLAG00000005102) #12	CYP20A1 (ENSCLAG00000004163) #14	ENSCLAG00000006025 #7	ENSCLAG00000004760	ABI2 (ENSCLAG00000004021) #15	ENSCLAG00000003175 #16	CD28 (ENSCLAG00000004670) #18	CTLA4 (ENSCLAG00000004042) #19	ICOS (ENSCLAG00000003964) #20	PARD3B (ENSCLAG00000010240) #21	NRP2 (ENSCLAG00000009120) #22	INO80D (ENSCLAG00000006191) #25	NDUFS1 (ENSCLAG00000009634) #26	EEF1B2 (ENSCLAG00000009181) ##27	CMKLR2 (ENSCLAG00000008973)	ENSCLAG00000008490	ATXN3L (ENSCLAG00000005825)	ADAM23 (ENSCLAG00000004674) #30	DYTN (ENSCLAG00000003705) #32	MDH1B (ENSCLAG00000003385)	FASTKD2 (ENSCLAG00000007036)	KLF7 (ENSCLAG00000006083)	CREB1 (ENSCLAG00000005853)	METTL21A (ENSCLAG00000005572)	ENSCLAG00000005432	ENSCLAG00000004502
Degu	MODERN SPECIES	57	ENSODEG00000009897	ENSODEG00000011455	WDR12 (ENSODEG00000011602) #10	CARF (ENSODEG00000011312) #11	NBEAL1 (ENSODEG00000010440) #12	CYP20A1 (ENSODEG00000010253) #14	ENSODEG00000009779	ABI2 (ENSODEG00000009457) #15	ENSODEG00000013477 #16	CTLA4 (ENSODEG00000009327) #19	ENSODEG00000010295	ICOS (ENSODEG00000011327) #20	ENSODEG00000009131	ENSODEG00000010021	PARD3B (ENSODEG00000012523) #21	ENSODEG00000010455 #22	INO80D (ENSODEG00000009769) #25	ENSODEG00000019630	ENSODEG00000008842 #26	ENSODEG00000009030 #26	ENSODEG00000008974 #26	ENSODEG00000010229 ##27	ENSODEG00000019757	ADAM23 (ENSODEG00000011161) #30	DYTN (ENSODEG00000009029) #32	MDH1B (ENSODEG00000009494)	FASTKD2 (ENSODEG00000009880)	KLF7 (ENSODEG00000010345)	ENSODEG00000009956	ENSODEG00000009302	CREB1 (ENSODEG00000010264)
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Eulipotyphla	ANCESTRAL SPECIES	1829															ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22
Hedgehog	MODERN SPECIES	1961																NRP2 (ENSEEUG00000012888) #22
Common shrew	MODERN SPECIES	1244															PARD3B (ENSSARG00000010690) #21	NRP2 (ENSSARG00000010738) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Suina	ANCESTRAL SPECIES	3	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Chacoan peccary	MODERN SPECIES	91	SUMO1 (ENSCWAG00000016775)	NOP58 (ENSCWAG00000016884)	BMPR2 (ENSCWAG00000016944)	FAM117B (ENSCWAG00000017046) #8	ICA1L (ENSCWAG00000017108) #9	WDR12 (ENSCWAG00000017209) #10	CARF (ENSCWAG00000017264) #11	NBEAL1 (ENSCWAG00000017563) #12	CYP20A1 (ENSCWAG00000017608) #14	ABI2 (ENSCWAG00000017671) #15	RAPH1 (ENSCWAG00000018090) #16	CD28 (ENSCWAG00000020352) #18	CTLA4 (ENSCWAG00000020380) #19	ICOS (ENSCWAG00000020408) #20	PARD3B (ENSCWAG00000020460) #21	NRP2 (ENSCWAG00000020581) #22	INO80D (ENSCWAG00000020612) #25	ENSCWAG00000020619	NDUFS1 (ENSCWAG00000020647) #26	EEF1B2 (ENSCWAG00000020782) ##27	CMKLR2 (ENSCWAG00000020796)	ENSCWAG00000020804 #29	ENSCWAG00000020821
Pig	MODERN SPECIES	6	BMPR2 (ENSSSCG00000016113)	FAM117B (ENSSSCG00000016114) #8	ENSSSCG00000043400	ICA1L (ENSSSCG00000016115) #9	WDR12 (ENSSSCG00000016116) #10	CARF (ENSSSCG00000016117) #11	NBEAL1 (ENSSSCG00000016118) #12	CYP20A1 (ENSSSCG00000055761) #14	ABI2 (ENSSSCG00000034630) #15	ENSSSCG00000016119 #16	CD28 (ENSSSCG00000028561) #18	CTLA4 (ENSSSCG00000016122) #19	ICOS (ENSSSCG00000025042) #20	PARD3B (ENSSSCG00000016123) #21	ENSSSCG00000055400	NRP2 (ENSSSCG00000026383) #22	INO80D (ENSSSCG00000016125) #25	NDUFS1 (ENSSSCG00000016127) #26	EEF1B2 (ENSSSCG00000016128) ##27	CMKLR2 (ENSSSCG00000016129)	ZDBF2 (ENSSSCG00000016130) #29	ADAM23 (ENSSSCG00000016131) #30	FAM237A (ENSSSCG00000036691) #31	DYTN (ENSSSCG00000035158) #32	MDH1B (ENSSSCG00000016133)	FASTKD2 (ENSSSCG00000016134)	CPO (ENSSSCG00000016135)	KLF7 (ENSSSCG00000029998)	ENSSSCG00000042730	CREB1 (ENSSSCG00000034395)	METTL21A (ENSSSCG00000036466)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00390000001958.n.a.g	ENSGT00940000154453.b.b
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00390000001958.n.a.g	ENSGT00390000004738.q.b
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00390000001958.n.a.g	ENSGT00940000154453.b.b
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00960000190610	ENSGT00440000037606.b #29	ENSGT00910000144184.r.a.a.a.a	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00950000183010.a.b.a.a.b	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00960000190610	ENSGT00440000037606.b #29	ENSGT00910000144184.r.a.a.a.a	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Narwhal	MODERN SPECIES	302	FAM117B (ENSMMNG00015007345) #8	ICA1L (ENSMMNG00015007312) #9	WDR12 (ENSMMNG00015007273) #10	CARF (ENSMMNG00015007132) #11	NBEAL1 (ENSMMNG00015007045) #12	CYP20A1 (ENSMMNG00015007001) #14	ABI2 (ENSMMNG00015006963) #15	RAPH1 (ENSMMNG00015006494) #16	ENSMMNG00015006290	CD28 (ENSMMNG00015006278) #18	CTLA4 (ENSMMNG00015006260) #19	ICOS (ENSMMNG00015006232) #20	ENSMMNG00015006206	ENSMMNG00015006192	PARD3B (ENSMMNG00015005987) #21	NRP2 (ENSMMNG00015005855) #22	INO80D (ENSMMNG00015005802) #25	NDUFS1 (ENSMMNG00015005695) #26	EEF1B2 (ENSMMNG00015005617) ##27	CMKLR2 (ENSMMNG00015005602)	ENSMMNG00015005593	ZDBF2 (ENSMMNG00015005582) #29	ENSMMNG00015005570	ADAM23 (ENSMMNG00015005478) #30	FAM237A (ENSMMNG00015005439) #31	DYTN (ENSMMNG00015005422) #32	MDH1B (ENSMMNG00015005351)	FASTKD2 (ENSMMNG00015005336)	KLF7 (ENSMMNG00015005320)	CREB1 (ENSMMNG00015005293)	METTL21A (ENSMMNG00015005268)
Beluga whale	MODERN SPECIES	84	ICA1L (ENSDLEG00000018321) #9	WDR12 (ENSDLEG00000018347) #10	CARF (ENSDLEG00000018361) #11	NBEAL1 (ENSDLEG00000018755) #12	ENSDLEG00000020428 #15	ENSDLEG00000008100 #15	RAPH1 (ENSDLEG00000008223) #16	ENSDLEG00000008980	ENSDLEG00000009004 #18	CTLA4 (ENSDLEG00000009020) #19	ICOS (ENSDLEG00000009050) #20	ENSDLEG00000009073	ENSDLEG00000009090	ENSDLEG00000009108	PARD3B (ENSDLEG00000009127) #21	NRP2 (ENSDLEG00000009192) #22	INO80D (ENSDLEG00000009298) #25	NDUFS1 (ENSDLEG00000009340) #26	EEF1B2 (ENSDLEG00000009390) ##27	GPR1 (ENSDLEG00000009434)	ENSDLEG00000009440	ZDBF2 (ENSDLEG00000009453) #29	ADAM23 (ENSDLEG00000009497) #30	FAM237A (ENSDLEG00000009620) #31	DYTN (ENSDLEG00000009655) #32	MDH1B (ENSDLEG00000009773)	FASTKD2 (ENSDLEG00000009822)	KLF7 (ENSDLEG00000009871)	CREB1 (ENSDLEG00000009895)	METTL21A (ENSDLEG00000009925)	ENSDLEG00000009942
Vaquita	MODERN SPECIES	18	SUMO1 (ENSPSNG00000012848)	NOP58 (ENSPSNG00000012735)	BMPR2 (ENSPSNG00000012669)	FAM117B (ENSPSNG00000012551) #8	ICA1L (ENSPSNG00000012492) #9	WDR12 (ENSPSNG00000012441) #10	CARF (ENSPSNG00000011886) #11	NBEAL1 (ENSPSNG00000011649) #12	CYP20A1 (ENSPSNG00000011532) #14	ABI2 (ENSPSNG00000011330) #15	RAPH1 (ENSPSNG00000009801) #16	ENSPSNG00000009309 #18	CTLA4 (ENSPSNG00000009249) #19	ICOS (ENSPSNG00000009099) #20	PARD3B (ENSPSNG00000008898) #21	NRP2 (ENSPSNG00000008707) #22	ENSPSNG00000008614	INO80D (ENSPSNG00000008590) #25	NDUFS1 (ENSPSNG00000008252) #26	EEF1B2 (ENSPSNG00000008153) ##27	CMKLR2 (ENSPSNG00000008130)	ENSPSNG00000008115	ZDBF2 (ENSPSNG00000008096) #29	ENSPSNG00000008082	ADAM23 (ENSPSNG00000007702) #30	FAM237A (ENSPSNG00000022142) #31	DYTN (ENSPSNG00000022128) #32	MDH1B (ENSPSNG00000022108)	FASTKD2 (ENSPSNG00000022088)	KLF7 (ENSPSNG00000022054)	CREB1 (ENSPSNG00000022021)
Dolphin	MODERN SPECIES	6557																NRP2 (ENSTTRG00000014816) #22
Sperm whale	MODERN SPECIES	11	BMPR2 (ENSPCTG00005003518)	FAM117B (ENSPCTG00005003547) #8	ICA1L (ENSPCTG00005003564) #9	WDR12 (ENSPCTG00005003584) #10	CARF (ENSPCTG00005003645) #11	NBEAL1 (ENSPCTG00005003780) #12	CYP20A1 (ENSPCTG00005003802) #14	ABI2 (ENSPCTG00005003833) #15	RAPH1 (ENSPCTG00005003938) #16	ENSPCTG00005005119 #18	CTLA4 (ENSPCTG00005005168) #19	ICOS (ENSPCTG00005005246) #20	ENSPCTG00005005318	ENSPCTG00005005328	PARD3B (ENSPCTG00005005375) #21	NRP2 (ENSPCTG00005005530) #22	ENSPCTG00005006370	INO80D (ENSPCTG00005006389) #25	ENSPCTG00005006412	NDUFS1 (ENSPCTG00005006448) #26	EEF1B2 (ENSPCTG00005006746) ##27	GPR1 (ENSPCTG00005006803)	ZDBF2 (ENSPCTG00005006840) #29	ADAM23 (ENSPCTG00005007031) #30	FAM237A (ENSPCTG00005007294) #31	DYTN (ENSPCTG00005007310) #32	MDH1B (ENSPCTG00005007378)	FASTKD2 (ENSPCTG00005004965)	KLF7 (ENSPCTG00005005002)	CREB1 (ENSPCTG00005005085)	METTL21A (ENSPCTG00005005122)
Blue whale	MODERN SPECIES	18	FAM117B (ENSBMSG00010006217) #8	ICA1L (ENSBMSG00010006262) #9	WDR12 (ENSBMSG00010006329) #10	CARF (ENSBMSG00010006417) #11	ENSBMSG00010006579 #12	ENSBMSG00010006612 #12	CYP20A1 (ENSBMSG00010006657) #14	ABI2 (ENSBMSG00010006723) #15	ENSBMSG00010000193 #18	ENSBMSG00010000215 #18	ENSBMSG00010000230	ENSBMSG00010000252	ICOS (ENSBMSG00010000278) #20	ENSBMSG00010000353	PARD3B (ENSBMSG00010000409) #21	NRP2 (ENSBMSG00010000535) #22	ENSBMSG00010001002	INO80D (ENSBMSG00010001021) #25	ENSBMSG00010001036	NDUFS1 (ENSBMSG00010001085) #26	EEF1B2 (ENSBMSG00010001199) ##27	CMKLR2 (ENSBMSG00010001229)	ZDBF2 (ENSBMSG00010001246) #29	ADAM23 (ENSBMSG00010001305) #30	FAM237A (ENSBMSG00010001408) #31	DYTN (ENSBMSG00010001424) #32	MDH1B (ENSBMSG00010001465)	FASTKD2 (ENSBMSG00010001509)	KLF7 (ENSBMSG00010001534)	CREB1 (ENSBMSG00010001606)	METTL21A (ENSBMSG00010001644)
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000154319.v.cb	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000154319.v.cb	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Bos	ANCESTRAL SPECIES	6	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT01100000263480.a.a.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00510000047245.w.a.a.b	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408
Cow	MODERN SPECIES	11	CARF (ENSBTAG00000016000) #11	ENSBTAG00000019994	NBEAL1 (ENSBTAG00000014469) #12	CYP20A1 (ENSBTAG00000000851) #14	ABI2 (ENSBTAG00000011017) #15	RAPH1 (ENSBTAG00000027201) #16	CD28 (ENSBTAG00000007445) #18	ENSBTAG00000051061	CTLA4 (ENSBTAG00000013170) #19	ICOS (ENSBTAG00000021596) #20	ENSBTAG00000040367	ENSBTAG00000051630	ENSBTAG00000049320	PARD3B (ENSBTAG00000010293) #21	ENSBTAG00000053833 #21	NRP2 (ENSBTAG00000011971) #22	INO80D (ENSBTAG00000014407) #25	ENSBTAG00000055132	NDUFS1 (ENSBTAG00000021976) #26	EEF1B2 (ENSBTAG00000021979) ##27	CMKLR2 (ENSBTAG00000017043)	ZDBF2 (ENSBTAG00000031166) #29	ADAM23 (ENSBTAG00000019694) #30	ENSBTAG00000055316	FAM237A (ENSBTAG00000050134) #31	DYTN (ENSBTAG00000046454) #32	MDH1B (ENSBTAG00000016192)	FASTKD2 (ENSBTAG00000016193)	CPO (ENSBTAG00000019190)	KLF7 (ENSBTAG00000044097)	CREB1 (ENSBTAG00000005474)
Hybrid Bos Indicus	MODERN SPECIES	11	BMPR2 (ENSBIXG00005031582)	FAM117B (ENSBIXG00005031583) #8	ICA1L (ENSBIXG00005031584) #9	WDR12 (ENSBIXG00005031585) #10	CARF (ENSBIXG00005031586) #11	ENSBIXG00005031587	NBEAL1 (ENSBIXG00005031588) #12	CYP20A1 (ENSBIXG00005031589) #14	ABI2 (ENSBIXG00005031590) #15	RAPH1 (ENSBIXG00005031591) #16	CD28 (ENSBIXG00005031593) #18	CTLA4 (ENSBIXG00005031594) #19	ICOS (ENSBIXG00005031595) #20	PARD3B (ENSBIXG00005031598) #21	ENSBIXG00005031599	NRP2 (ENSBIXG00005031600) #22	INO80D (ENSBIXG00005031603) #25	ENSBIXG00005031604	NDUFS1 (ENSBIXG00005031605) #26	ENSBIXG00005031606 ##27	CMKLR2 (ENSBIXG00005031611)	ZDBF2 (ENSBIXG00005031612) #29	ADAM23 (ENSBIXG00005031613) #30	ENSBIXG00005031614	DYTN (ENSBIXG00005031615) #32	MDH1B (ENSBIXG00005031616)	FASTKD2 (ENSBIXG00005031617)	CPO (ENSBIXG00005031618)	KLF7 (ENSBIXG00005031620)	ENSBIXG00005031623	CREB1 (ENSBIXG00005031624)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.a ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00510000047245.w.a.a.b	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Wild yak	MODERN SPECIES	1701															ENSBMUG00000019977 #21	NRP2 (ENSBMUG00000019949) #22	INO80D (ENSBMUG00000019906) #25	NDUFS1 (ENSBMUG00000019884) #26	ENSBMUG00000019833 ##27	CMKLR2 (ENSBMUG00000019826)
Domestic yak	MODERN SPECIES	11	ICA1L (ENSBGRG00000016892) #9	WDR12 (ENSBGRG00000016744) #10	ENSBGRG00000016729	CARF (ENSBGRG00000016286) #11	ENSBGRG00000016261	NBEAL1 (ENSBGRG00000016043) #12	CYP20A1 (ENSBGRG00000015562) #14	ABI2 (ENSBGRG00000014834) #15	ENSBGRG00000012733 #16	CD28 (ENSBGRG00000012545) #18	CTLA4 (ENSBGRG00000012384) #19	ENSBGRG00000012357	ICOS (ENSBGRG00000012246) #20	ENSBGRG00000012209	PARD3B (ENSBGRG00000011721) #21	NRP2 (ENSBGRG00000010098) #22	ENSBGRG00000010010	INO80D (ENSBGRG00000009960) #25	NDUFS1 (ENSBGRG00000009516) #26	ENSBGRG00000009445 ##27	CMKLR2 (ENSBGRG00000009401)	ZDBF2 (ENSBGRG00000009322) #29	ENSBGRG00000009270	ADAM23 (ENSBGRG00000008490) #30	FAM237A (ENSBGRG00000008425) #31	MDH1B (ENSBGRG00000008141)	FASTKD2 (ENSBGRG00000008051)	CPO (ENSBGRG00000007969)	ENSBGRG00000007943	KLF7 (ENSBGRG00000007842)	CREB1 (ENSBGRG00000007627)
American bison	MODERN SPECIES	3330	NOP58 (ENSBBBG00000012170)	BMPR2 (ENSBBBG00000012144)	ENSBBBG00000002273 #8	ENSBBBG00000012094 #8	ICA1L (ENSBBBG00000012090) #9	WDR12 (ENSBBBG00000012064) #10	CARF (ENSBBBG00000012044) #11	NBEAL1 (ENSBBBG00000011985) #12	CYP20A1 (ENSBBBG00000002236) #14	ABI2 (ENSBBBG00000011940) #15	ENSBBBG00000011830 #16	CD28 (ENSBBBG00000002157) #18	CTLA4 (ENSBBBG00000002155) #19	ICOS (ENSBBBG00000011656) #20	PARD3B (ENSBBBG00000011555) #21	NRP2 (ENSBBBG00000011269) #22	INO80D (ENSBBBG00000011164) #25	NDUFS1 (ENSBBBG00000011148) #26	ENSBBBG00000011052 ##27	CMKLR2 (ENSBBBG00000011031)	ZDBF2 (ENSBBBG00000011029) #29	ADAM23 (ENSBBBG00000011005) #30	FAM237A (ENSBBBG00000010954) #31	DYTN (ENSBBBG00000010949) #32	MDH1B (ENSBBBG00000010925)	FASTKD2 (ENSBBBG00000010905)	CPO (ENSBBBG00000010898)	ENSBBBG00000010890	KLF7 (ENSBBBG00000010885)	CREB1 (ENSBBBG00000010873)	METTL21A (ENSBBBG00000010854)
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000154319.v.cb	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.u.a.a.b.b ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Goat	MODERN SPECIES	11	NOP58 (ENSCHIG00000025013)	BMPR2 (ENSCHIG00000020243)	FAM117B (ENSCHIG00000014630) #8	ICA1L (ENSCHIG00000013077) #9	WDR12 (ENSCHIG00000009469) #10	CARF (ENSCHIG00000023655) #11	ENSCHIG00000016764	NBEAL1 (ENSCHIG00000000921) #12	CYP20A1 (ENSCHIG00000022946) #14	ABI2 (ENSCHIG00000002652) #15	RAPH1 (ENSCHIG00000025930) #16	CD28 (ENSCHIG00000024564) #18	CTLA4 (ENSCHIG00000008042) #19	ICOS (ENSCHIG00000024943) #20	PARD3B (ENSCHIG00000007723) #21	NRP2 (ENSCHIG00000016092) #22	INO80D (ENSCHIG00000010718) #25	NDUFS1 (ENSCHIG00000014971) #26	EEF1B2 (ENSCHIG00000026794) ##27	CMKLR2 (ENSCHIG00000007661)	ZDBF2 (ENSCHIG00000022575) #29	ADAM23 (ENSCHIG00000011689) #30	FAM237A (ENSCHIG00000010865) #31	DYTN (ENSCHIG00000016602) #32	MDH1B (ENSCHIG00000022560)	FASTKD2 (ENSCHIG00000015121)	ENSCHIG00000003872	ENSCHIG00000026347	CPO (ENSCHIG00000020644)	KLF7 (ENSCHIG00000006619)	CREB1 (ENSCHIG00000027161)
Rambouillet Sheep	MODERN SPECIES	11	NOP58 (ENSOARG00020023408)	BMPR2 (ENSOARG00020006563)	FAM117B (ENSOARG00020006688) #8	ICA1L (ENSOARG00020006778) #9	WDR12 (ENSOARG00020006896) #10	CARF (ENSOARG00020006968) #11	NBEAL1 (ENSOARG00020007440) #12	CYP20A1 (ENSOARG00020007538) #14	ABI2 (ENSOARG00020007596) #15	RAPH1 (ENSOARG00020007863) #16	ENSOARG00020008167	CD28 (ENSOARG00020008197) #18	CTLA4 (ENSOARG00020008302) #19	ICOS (ENSOARG00020008420) #20	PARD3B (ENSOARG00020008587) #21	NRP2 (ENSOARG00020013172) #22	ENSOARG00020013371	INO80D (ENSOARG00020013391) #25	NDUFS1 (ENSOARG00020013502) #26	ENSOARG00020014163 ##27	GPR1 (ENSOARG00020014248)	ZDBF2 (ENSOARG00020014286) #29	ADAM23 (ENSOARG00020014405) #30	FAM237A (ENSOARG00020014982) #31	DYTN (ENSOARG00020015031) #32	MDH1B (ENSOARG00020015160)	FASTKD2 (ENSOARG00020015403)	CPO (ENSOARG00020015466)	KLF7 (ENSOARG00020015555)	CREB1 (ENSOARG00020015664)	METTL21A (ENSOARG00020015859)
Siberian musk deer	MODERN SPECIES	352											CD28 (ENSMMSG00000016228) #18	CTLA4 (ENSMMSG00000016291) #19	ICOS (ENSMMSG00000016369) #20	ENSMMSG00000016441	PARD3B (ENSMMSG00000016488) #21	NRP2 (ENSMMSG00000016704) #22	INO80D (ENSMMSG00000016888) #25	NDUFS1 (ENSMMSG00000016943) #26	ENSMMSG00000017130 ##27	ZDBF2 (ENSMMSG00000017183) #29	ADAM23 (ENSMMSG00000017291) #30	FAM237A (ENSMMSG00000017572) #31	DYTN (ENSMMSG00000017587) #32	MDH1B (ENSMMSG00000017649)	FASTKD2 (ENSMMSG00000017717)	CPO (ENSMMSG00000017798)	KLF7 (ENSMMSG00000017874)	ENSMMSG00000017910	CREB1 (ENSMMSG00000017935)	ENSMMSG00000017981	ENSMMSG00000018078
Yarkand deer	MODERN SPECIES	31	ICA1L (ENSCHYG00000003466) #9	WDR12 (ENSCHYG00000003428) #10	ENSCHYG00000003419	CARF (ENSCHYG00000003336) #11	NBEAL1 (ENSCHYG00000003290) #12	CYP20A1 (ENSCHYG00000003265) #14	ENSCHYG00000003256	ABI2 (ENSCHYG00000003231) #15	RAPH1 (ENSCHYG00000002595) #16	CD28 (ENSCHYG00000002432) #18	CTLA4 (ENSCHYG00000002394) #19	ICOS (ENSCHYG00000002371) #20	ENSCHYG00000002349	ENSCHYG00000002345	PARD3B (ENSCHYG00000002220) #21	NRP2 (ENSCHYG00000002124) #22	ENSCHYG00000002093	INO80D (ENSCHYG00000002072) #25	NDUFS1 (ENSCHYG00000001983) #26	ENSCHYG00000001947 ##27	ENSCHYG00000001938	CMKLR2 (ENSCHYG00000001927)	ZDBF2 (ENSCHYG00000001897) #29	ADAM23 (ENSCHYG00000001792) #30	FAM237A (ENSCHYG00000001756) #31	DYTN (ENSCHYG00000001729) #32	ENSCHYG00000001715	MDH1B (ENSCHYG00000001680)	FASTKD2 (ENSCHYG00000001648)	CPO (ENSCHYG00000001618)	KLF7 (ENSCHYG00000001583)
Camelidae	ANCESTRAL SPECIES	58	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Alpaca	MODERN SPECIES	2771			BMPR2 (ENSVPAG00000009496)	ENSVPAG00000009497 #8	ICA1L (ENSVPAG00000009498) #9	WDR12 (ENSVPAG00000009500) #10	CARF (ENSVPAG00000009501) #11	ENSVPAG00000009502 #12	ENSVPAG00000009503 #12	CYP20A1 (ENSVPAG00000009505) #14	ABI2 (ENSVPAG00000009506) #15	RAPH1 (ENSVPAG00000009507) #16	CD28 (ENSVPAG00000009510) #18	ICOS (ENSVPAG00000009512) #20	PARD3B (ENSVPAG00000009514) #21	ENSVPAG00000009518 #22
Arabian camel	MODERN SPECIES	31	NOP58 (ENSCDRG00005019373)	ENSCDRG00005019360	BMPR2 (ENSCDRG00005019320)	ENSCDRG00005019289 #8	ENSCDRG00005019283 #8	ICA1L (ENSCDRG00005019255) #9	WDR12 (ENSCDRG00005019221) #10	CARF (ENSCDRG00005019098) #11	NBEAL1 (ENSCDRG00005019031) #12	ABI2 (ENSCDRG00005018744) #15	ENSCDRG00005018577 #16	CD28 (ENSCDRG00005018484) #18	CTLA4 (ENSCDRG00005018448) #19	ICOS (ENSCDRG00005018420) #20	PARD3B (ENSCDRG00005018074) #21	NRP2 (ENSCDRG00005017938) #22	INO80D (ENSCDRG00005017847) #25	NDUFS1 (ENSCDRG00005017509) #26	EEF1B2 (ENSCDRG00005017418) ##27	CMKLR2 (ENSCDRG00005017405)	ZDBF2 (ENSCDRG00005017378) #29	ADAM23 (ENSCDRG00005016801) #30	FAM237A (ENSCDRG00005016730) #31	DYTN (ENSCDRG00005016665) #32	MDH1B (ENSCDRG00005016545)	FASTKD2 (ENSCDRG00005016506)	CPO (ENSCDRG00005016423)	KLF7 (ENSCDRG00005016375)	CREB1 (ENSCDRG00005016249)	METTL21A (ENSCDRG00005016143)	ENSCDRG00005016106
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00940000153064.b.d	ENSGT01050000244818.s.a	ENSGT01090000260046	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000153534.A	ENSGT01090000263468	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b
Equus	ANCESTRAL SPECIES	18	ENSGT00940000153534.A	ENSGT01090000263468	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.g.b.b #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.b	ENSGT00940000162639
Horse	MODERN SPECIES	9	NOP58 (ENSECAG00000024696)	BMPR2 (ENSECAG00000025141)	ENSECAG00000054476	FAM117B (ENSECAG00000004249) #8	ICA1L (ENSECAG00000009288) #9	WDR12 (ENSECAG00000009547) #10	CARF (ENSECAG00000017624) #11	NBEAL1 (ENSECAG00000020049) #12	CYP20A1 (ENSECAG00000010884) #14	ABI2 (ENSECAG00000018236) #15	ENSECAG00000022376 #16	CD28 (ENSECAG00000022853) #18	CTLA4 (ENSECAG00000003996) #19	ICOS (ENSECAG00000006253) #20	PARD3B (ENSECAG00000008768) #21	NRP2 (ENSECAG00000016824) #22	INO80D (ENSECAG00000015076) #25	NDUFS1 (ENSECAG00000015914) #26	EEF1B2 (ENSECAG00000016653) #27	CMKLR2 (ENSECAG00000004408)	ZDBF2 (ENSECAG00000039959) #29	ADAM23 (ENSECAG00000018514) #30	FAM237A (ENSECAG00000050449) #31	DYTN (ENSECAG00000006820) #32	MDH1B (ENSECAG00000007491)	FASTKD2 (ENSECAG00000008822)	KLF7 (ENSECAG00000012215)	CREB1 (ENSECAG00000013667)	METTL21A (ENSECAG00000017536)	PLEKHM3 (ENSECAG00000008108)	FZD5 (ENSECAG00000007309)
Donkey	MODERN SPECIES	24	ENSEASG00005028104	BMPR2 (ENSEASG00005002457)	FAM117B (ENSEASG00005031822) #8	ICA1L (ENSEASG00005002554) #9	ENSEASG00005027147 #9	WDR12 (ENSEASG00005002567) #10	CARF (ENSEASG00005002591) #11	NBEAL1 (ENSEASG00005002684) #12	CYP20A1 (ENSEASG00005002770) #14	ABI2 (ENSEASG00005002778) #15	ENSEASG00005002800 #16	CD28 (ENSEASG00005002842) #18	CTLA4 (ENSEASG00005002849) #19	ICOS (ENSEASG00005002854) #20	PARD3B (ENSEASG00005002870) #21	NRP2 (ENSEASG00005002875) #22	INO80D (ENSEASG00005002880) #25	NDUFS1 (ENSEASG00005002883) #26	EEF1B2 (ENSEASG00005026194) #27	CMKLR2 (ENSEASG00005002916)	ZDBF2 (ENSEASG00005023969) #29	ADAM23 (ENSEASG00005002928) #30	FAM237A (ENSEASG00005002935) #31	DYTN (ENSEASG00005002938) #32	MDH1B (ENSEASG00005002948)	FASTKD2 (ENSEASG00005002958)	KLF7 (ENSEASG00005002973)	CREB1 (ENSEASG00005002983)	ENSEASG00005024979	CCNYL1 (ENSEASG00005003014)	FZD5 (ENSEASG00005003041)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Megabat	MODERN SPECIES	152																NRP2 (ENSPVAG00000006389) #22	INO80D (ENSPVAG00000006390) #25
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.a.a
Greater horseshoe bat	MODERN SPECIES	26	NOP58 (ENSRFEG00010014939)	RPL39_1 (ENSRFEG00010014922)	BMPR2 (ENSRFEG00010014707)	FAM117B (ENSRFEG00010014554) #8	ICA1L (ENSRFEG00010014466) #9	WDR12 (ENSRFEG00010014405) #10	CARF (ENSRFEG00010013855) #11	NBEAL1 (ENSRFEG00010013724) #12	CYP20A1 (ENSRFEG00010013600) #14	ABI2 (ENSRFEG00010013372) #15	RAPH1 (ENSRFEG00010013239) #16	CD28 (ENSRFEG00010013138) #18	ENSRFEG00010013108 #19	ICOS (ENSRFEG00010013045) #20	PARD3B (ENSRFEG00010012777) #21	NRP2 (ENSRFEG00010012560) #22	INO80D (ENSRFEG00010012508) #25	NDUFS1 (ENSRFEG00010011973) #26	EEF1B2 (ENSRFEG00010011873) ##27	CMKLR2 (ENSRFEG00010011856)	ENSRFEG00010011751 #29	ADAM23 (ENSRFEG00010010998) #30	FAM237A (ENSRFEG00010010918) #31	DYTN (ENSRFEG00010010740) #32	MDH1B (ENSRFEG00010010537)	FASTKD2 (ENSRFEG00010010475)	CPO (ENSRFEG00010010427)	KLF7 (ENSRFEG00010010310)	CREB1 (ENSRFEG00010020193)	ENSRFEG00010020167	METTL21A (ENSRFEG00010020119)
Microbat	MODERN SPECIES	940	WDR12 (ENSMLUG00000025847) #10	CARF (ENSMLUG00000007015) #11	NBEAL1 (ENSMLUG00000007434) #12	CYP20A1 (ENSMLUG00000014996) #14	ABI2 (ENSMLUG00000008117) #15	RAPH1 (ENSMLUG00000008162) #16	CD28 (ENSMLUG00000004329) #18	CTLA4 (ENSMLUG00000009619) #19	ICOS (ENSMLUG00000009627) #20	ENSMLUG00000024002	ENSMLUG00000025717 #21	ENSMLUG00000013841 #21	ENSMLUG00000026514	ENSMLUG00000022709 #21	ENSMLUG00000028553 #21	NRP2 (ENSMLUG00000013862) #22	INO80D (ENSMLUG00000007714) #25	NDUFS1 (ENSMLUG00000016594) #26	ENSMLUG00000016602 ##27	CMKLR2 (ENSMLUG00000016607)	ENSMLUG00000023597	ZDBF2 (ENSMLUG00000014265) #29	ADAM23 (ENSMLUG00000009364) #30	FAM237A (ENSMLUG00000030140) #31	DYTN (ENSMLUG00000028179) #32	MDH1B (ENSMLUG00000009390)	FASTKD2 (ENSMLUG00000009411)	CPO (ENSMLUG00000009428)	KLF7 (ENSMLUG00000009436)	CREB1 (ENSMLUG00000016119)	METTL21A (ENSMLUG00000015747)
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a	ENSGT00530000063873.A #18	ENSGT01090000260046	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.o ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00520000059926.a.b	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.o ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00520000059926.a.b	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.o ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
leopard	MODERN SPECIES	12							NBEAL1 (ENSPPRG00000024650) #12	CYP20A1 (ENSPPRG00000024582) #14	ABI2 (ENSPPRG00000024330) #15	ENSPPRG00000023758 #16	CD28 (ENSPPRG00000023378) #18	CTLA4 (ENSPPRG00000023337) #19	ICOS (ENSPPRG00000023149) #20	ENSPPRG00000020852	PARD3B (ENSPPRG00000001193) #21	NRP2 (ENSPPRG00000001684) #22	INO80D (ENSPPRG00000001843) #25	NDUFS1 (ENSPPRG00000003837) #26	ENSPPRG00000004175 ##27	CMKLR2 (ENSPPRG00000020893)	ADAM23 (ENSPPRG00000004864) #30	FAM237A (ENSPPRG00000005451) #31	DYTN (ENSPPRG00000005491) #32	MDH1B (ENSPPRG00000005932)	FASTKD2 (ENSPPRG00000006075)	CPO (ENSPPRG00000006106)	KLF7 (ENSPPRG00000006377)	CREB1 (ENSPPRG00000006712)	METTL21A (ENSPPRG00000006796)	ENSPPRG00000007043	PLEKHM3 (ENSPPRG00000007268)
lion	MODERN SPECIES	8	NOP58 (ENSPLOG00000011950)	BMPR2 (ENSPLOG00000011747)	FAM117B (ENSPLOG00000011690) #8	ICA1L (ENSPLOG00000011556) #9	WDR12 (ENSPLOG00000011514) #10	CARF (ENSPLOG00000011224) #11	NBEAL1 (ENSPLOG00000010825) #12	CYP20A1 (ENSPLOG00000010756) #14	ABI2 (ENSPLOG00000010377) #15	ENSPLOG00000010151 #16	CD28 (ENSPLOG00000010049) #18	CTLA4 (ENSPLOG00000010005) #19	ICOS (ENSPLOG00000009959) #20	ENSPLOG00000009936	PARD3B (ENSPLOG00000008780) #21	NRP2 (ENSPLOG00000008415) #22	INO80D (ENSPLOG00000008354) #25	NDUFS1 (ENSPLOG00000008138) #26	ENSPLOG00000008015	ENSPLOG00000007981 ##27	CMKLR2 (ENSPLOG00000007963)	ZDBF2 (ENSPLOG00000007898) #29	ENSPLOG00000007877	ADAM23 (ENSPLOG00000007574) #30	FAM237A (ENSPLOG00000007523) #31	DYTN (ENSPLOG00000007459) #32	MDH1B (ENSPLOG00000007375)	FASTKD2 (ENSPLOG00000007345)	CPO (ENSPLOG00000007242)	KLF7 (ENSPLOG00000007130)	CREB1 (ENSPLOG00000007090)
Tiger	MODERN SPECIES	313	BMPR2 (ENSPTIG00000013082)	ENSPTIG00000008227 #8	ICA1L (ENSPTIG00000013050) #9	WDR12 (ENSPTIG00000013035) #10	CARF (ENSPTIG00000012946) #11	ENSPTIG00000008218	NBEAL1 (ENSPTIG00000012887) #12	CYP20A1 (ENSPTIG00000012850) #14	ABI2 (ENSPTIG00000012734) #15	ENSPTIG00000012473 #16	CD28 (ENSPTIG00000012428) #18	CTLA4 (ENSPTIG00000012408) #19	ICOS (ENSPTIG00000012385) #20	ENSPTIG00000008211	PARD3B (ENSPTIG00000012297) #21	NRP2 (ENSPTIG00000012139) #22	INO80D (ENSPTIG00000012089) #25	NDUFS1 (ENSPTIG00000012021) #26	ENSPTIG00000011994 ##27	CMKLR2 (ENSPTIG00000008203)	ADAM23 (ENSPTIG00000011931) #30	FAM237A (ENSPTIG00000011920) #31	DYTN (ENSPTIG00000011914) #32	MDH1B (ENSPTIG00000011902)	FASTKD2 (ENSPTIG00000011891)	CPO (ENSPTIG00000011884)	KLF7 (ENSPTIG00000011869)	CREB1 (ENSPTIG00000011848)	METTL21A (ENSPTIG00000011823)	ENSPTIG00000011797	PLEKHM3 (ENSPTIG00000011775)
Cat	MODERN SPECIES	239	FAM117B (ENSFCAG00000046269) #8	ICA1L (ENSFCAG00000008514) #9	WDR12 (ENSFCAG00000026676) #10	CARF (ENSFCAG00000046458) #11	NBEAL1 (ENSFCAG00000025997) #12	ENSFCAG00000027770	ENSFCAG00000048141	CYP20A1 (ENSFCAG00000022927) #14	ABI2 (ENSFCAG00000012982) #15	RAPH1 (ENSFCAG00000019050) #16	ENSFCAG00000034107	CD28 (ENSFCAG00000014271) #18	CTLA4 (ENSFCAG00000014272) #19	ICOS (ENSFCAG00000038001) #20	PARD3B (ENSFCAG00000025870) #21	NRP2 (ENSFCAG00000000423) #22	INO80D (ENSFCAG00000022035) #25	NDUFS1 (ENSFCAG00000023344) #26	EEF1B2 (ENSFCAG00000010239) ##27	CMKLR2 (ENSFCAG00000028762)	ZDBF2 (ENSFCAG00000041779) #29	ADAM23 (ENSFCAG00000018551) #30	DYTN (ENSFCAG00000024422) #32	MDH1B (ENSFCAG00000015372)	FASTKD2 (ENSFCAG00000015373)	CPO (ENSFCAG00000002513)	KLF7 (ENSFCAG00000002514)	CREB1 (ENSFCAG00000008220)	METTL21A (ENSFCAG00000035900)	CCNYL1 (ENSFCAG00000028003)	ENSFCAG00000039577
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a	ENSGT00530000063873.A #18	ENSGT01090000260046	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Canidae	ANCESTRAL SPECIES	20	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT01090000260046.e.a.a.b	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.q ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000154694.l.b.b.a.a.b	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h.q ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Dingo	MODERN SPECIES	398	FAM117B (ENSCAFG00020002101) #8	ICA1L (ENSCAFG00020002040) #9	WDR12 (ENSCAFG00020001958) #10	CARF (ENSCAFG00020001932) #11	ENSCAFG00020001912	NBEAL1 (ENSCAFG00020001831) #12	CYP20A1 (ENSCAFG00020001812) #14	ENSCAFG00020001801	ENSCAFG00020001784	ABI2 (ENSCAFG00020001752) #15	RAPH1 (ENSCAFG00020001630) #16	CD28 (ENSCAFG00020001531) #18	CTLA4 (ENSCAFG00020001506) #19	ICOS (ENSCAFG00020001489) #20	PARD3B (ENSCAFG00020001089) #21	NRP2 (ENSCAFG00020000746) #22	INO80D (ENSCAFG00020000661) #25	NDUFS1 (ENSCAFG00020000642) #26	EEF1B2 (ENSCAFG00020000617) ##27	CMKLR2 (ENSCAFG00020000614)	ZDBF2 (ENSCAFG00020000545) #29	ADAM23 (ENSCAFG00020000240) #30	FAM237A (ENSCAFG00020000156) #31	DYTN (ENSCAFG00020027434) #32	MDH1B (ENSCAFG00020027429)	FASTKD2 (ENSCAFG00020027426)	CPO (ENSCAFG00020027425)	KLF7 (ENSCAFG00020027423)	CREB1 (ENSCAFG00020027420)	METTL21A (ENSCAFG00020027418)	ENSCAFG00020027415
Dog	MODERN SPECIES	30	WDR12 (ENSCAFG00845015685) #10	CARF (ENSCAFG00845015868) #11	ENSCAFG00845016161	NBEAL1 (ENSCAFG00845016248) #12	CYP20A1 (ENSCAFG00845016438) #14	ENSCAFG00845016541	ABI2 (ENSCAFG00845016661) #15	ENSCAFG00845016782	ENSCAFG00845016818	RAPH1 (ENSCAFG00845017225) #16	ENSCAFG00845017896	CD28 (ENSCAFG00845018097) #18	CTLA4 (ENSCAFG00845018252) #19	ICOS (ENSCAFG00845018403) #20	PARD3B (ENSCAFG00845018916) #21	NRP2 (ENSCAFG00845019968) #22	INO80D (ENSCAFG00845020375) #25	NDUFS1 (ENSCAFG00845020511) #26	EEF1B2 (ENSCAFG00845020822) ##27	GPR1 (ENSCAFG00845020895)	ZDBF2 (ENSCAFG00845020911) #29	ADAM23 (ENSCAFG00845021040) #30	FAM237A (ENSCAFG00845021430) #31	DYTN (ENSCAFG00845021457) #32	MDH1B (ENSCAFG00845021551)	FASTKD2 (ENSCAFG00845021685)	CPO (ENSCAFG00845021788)	KLF7 (ENSCAFG00845021900)	CREB1 (ENSCAFG00845022020)	METTL21A (ENSCAFG00845022171)	CCNYL1 (ENSCAFG00845022326)
Red fox	MODERN SPECIES	41	ICA1L (ENSVVUG00000018171) #9	WDR12 (ENSVVUG00000018074) #10	CARF (ENSVVUG00000017926) #11	ENSVVUG00000017885 #12	NBEAL1 (ENSVVUG00000017646) #12	CYP20A1 (ENSVVUG00000017336) #14	ENSVVUG00000017318	ENSVVUG00000017315	ABI2 (ENSVVUG00000017312) #15	RAPH1 (ENSVVUG00000017063) #16	CD28 (ENSVVUG00000017013) #18	ENSVVUG00000017012	CTLA4 (ENSVVUG00000017009) #19	ICOS (ENSVVUG00000017004) #20	PARD3B (ENSVVUG00000016975) #21	NRP2 (ENSVVUG00000016946) #22	INO80D (ENSVVUG00000016931) #25	NDUFS1 (ENSVVUG00000016918) #26	EEF1B2 (ENSVVUG00000016896) ##27	GPR1 (ENSVVUG00000016890)	ZDBF2 (ENSVVUG00000016880) #29
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Mustelinae	ANCESTRAL SPECIES	44	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Ferret	MODERN SPECIES	265	FAM117B (ENSMPUG00000000358) #8	ICA1L (ENSMPUG00000000375) #9	WDR12 (ENSMPUG00000000379) #10	CARF (ENSMPUG00000000382) #11	NBEAL1 (ENSMPUG00000000385) #12	ENSMPUG00000000395 #14	ENSMPUG00000000397 #14	ABI2 (ENSMPUG00000000402) #15	RAPH1 (ENSMPUG00000000405) #16	CD28 (ENSMPUG00000000418) #18	CTLA4 (ENSMPUG00000000422) #19	ICOS (ENSMPUG00000000425) #20	ENSMPUG00000000428	ENSMPUG00000000430 ##21	PARD3B (ENSMPUG00000000432) #21	NRP2 (ENSMPUG00000000435) #22	ENSMPUG00000000437	INO80D (ENSMPUG00000000439) #25	NDUFS1 (ENSMPUG00000000442) #26	EEF1B2 (ENSMPUG00000000444) ##27	CMKLR2 (ENSMPUG00000018909)	ZDBF2 (ENSMPUG00000000463) #29	ADAM23 (ENSMPUG00000000467) #30	ENSMPUG00000000471	MDH1B (ENSMPUG00000000473)	FASTKD2 (ENSMPUG00000000477)	CPO (ENSMPUG00000000481)	KLF7 (ENSMPUG00000000483)	CREB1 (ENSMPUG00000000485)	ENSMPUG00000018911	ENSMPUG00000000487
American mink	MODERN SPECIES	40	BMPR2 (ENSNVIG00000007469)	ENSNVIG00000007447 #8	ENSNVIG00000007441 #8	ICA1L (ENSNVIG00000007376) #9	WDR12 (ENSNVIG00000007326) #10	F6SXV3 (ENSNVIG00000007220) #11	NBEAL1 (ENSNVIG00000007140) #12	CYP20A1 (ENSNVIG00000007093) #14	ABI2 (ENSNVIG00000006920) #15	RAPH1 (ENSNVIG00000006475) #16	ENSNVIG00000006462	CD28 (ENSNVIG00000006426) #18	CTLA4 (ENSNVIG00000006392) #19	ICOS (ENSNVIG00000006380) #20	PARD3B (ENSNVIG00000005889) #21	NRP2 (ENSNVIG00000005651) #22	INO80D (ENSNVIG00000005634) #25	NDUFS1 (ENSNVIG00000005404) #26	EEF1B2 (ENSNVIG00000005362) ##27	GPR1 (ENSNVIG00000005355)	ZDBF2 (ENSNVIG00000005326) #29	ADAM23 (ENSNVIG00000005209) #30	FAM237A (ENSNVIG00000005198) #31	DYTN (ENSNVIG00000005190) #32	MDH1B (ENSNVIG00000005145)	FASTKD2 (ENSNVIG00000005116)	CBPO (ENSNVIG00000005106)	KLF7 (ENSNVIG00000005091)	CREB1 (ENSNVIG00000005058)	METTL21A (ENSNVIG00000005027)	ENSNVIG00000005020
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a.k	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b
Giant Panda	MODERN SPECIES	11	BMPR2 (ENSAMEG00000013148)	ENSAMEG00000013132 #8	ENSAMEG00000026389 #8	ICA1L (ENSAMEG00000013120) #9	WDR12 (ENSAMEG00000013091) #10	CARF (ENSAMEG00000013068) #11	NBEAL1 (ENSAMEG00000013020) #12	ABI2 (ENSAMEG00000012960) #15	ENSAMEG00000002970 #16	ENSAMEG00000030945	ENSAMEG00000028551	CD28 (ENSAMEG00000002955) #18	CTLA4 (ENSAMEG00000002942) #19	ICOS (ENSAMEG00000002936) #20	PARD3B (ENSAMEG00000002930) #21	NRP2 (ENSAMEG00000003086) #22	INO80D (ENSAMEG00000003072) #25	NDUFS1 (ENSAMEG00000003030) #26	ENSAMEG00000003015 ##27	ZDBF2 (ENSAMEG00000029468) #29	CMKLR2 (ENSAMEG00000003011)	ADAM23 (ENSAMEG00000002950) #30	FAM237A (ENSAMEG00000029073) #31	DYTN (ENSAMEG00000025472) #32	MDH1B (ENSAMEG00000002932)	FASTKD2 (ENSAMEG00000002917)	CPO (ENSAMEG00000015096)	KLF7 (ENSAMEG00000015148)	CREB1 (ENSAMEG00000015152)	METTL21A (ENSAMEG00000015168)	ENSAMEG00000015175
Ursus	ANCESTRAL SPECIES	4	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00940000157820.a.a.k	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00910000148124	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Polar bear	MODERN SPECIES	142	ENSUMAG00000021893 #8	ENSUMAG00000021898 #8	ICA1L (ENSUMAG00000021899) #9	WDR12 (ENSUMAG00000021904) #10	CARF (ENSUMAG00000021907) #11	ENSUMAG00000021909 #12	NBEAL1 (ENSUMAG00000021925) #12	CYP20A1 (ENSUMAG00000022062) #14	ABI2 (ENSUMAG00000022146) #15	RAPH1 (ENSUMAG00000022157) #16	ENSUMAG00000022213	CD28 (ENSUMAG00000022222) #18	CTLA4 (ENSUMAG00000022223) #19	ICOS (ENSUMAG00000022228) #20	PARD3B (ENSUMAG00000022273) #21	NRP2 (ENSUMAG00000022446) #22	ENSUMAG00000022452	INO80D (ENSUMAG00000022462) #25	NDUFS1 (ENSUMAG00000022473) #26	EEF1B2 (ENSUMAG00000022481) ##27	ZDBF2 (ENSUMAG00000022505) #29	ADAM23 (ENSUMAG00000022533) #30	FAM237A (ENSUMAG00000022571) #31	DYTN (ENSUMAG00000022576) #32	MDH1B (ENSUMAG00000022585)	FASTKD2 (ENSUMAG00000022590)	CPO (ENSUMAG00000022606)	KLF7 (ENSUMAG00000022629)	METTL21A (ENSUMAG00000022649)	CREB1 (ENSUMAG00000022656)	ENSUMAG00000022665
American black bear	DUPLICATION
American black bear	MODERN SPECIES	3124															ENSUAMG00000016631	NRP2 (ENSUAMG00000016625) #22
American black bear	MODERN SPECIES	6049																ENSUAMG00000012305 #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000154453.b.a.b
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000154319.v	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a.h ##27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b.b	ENSGT00940000162639
Elephant	MODERN SPECIES	301	ENSLAFG00000020653 #12	ENSLAFG00000015098 #12	CYP20A1 (ENSLAFG00000015110) #14	ABI2 (ENSLAFG00000015117) #15	ENSLAFG00000015135 #16	ENSLAFG00000031357	CD28 (ENSLAFG00000017773) #18	CTLA4 (ENSLAFG00000006654) #19	ICOS (ENSLAFG00000006657) #20	ENSLAFG00000026263	ENSLAFG00000030813 #21	ENSLAFG00000007708 #21	ENSLAFG00000026835 #21	ENSLAFG00000025673 #21	ENSLAFG00000030808 #21	NRP2 (ENSLAFG00000016414) #22	INO80D (ENSLAFG00000015352) #25	NDUFS1 (ENSLAFG00000013782) #26	EEF1B2 (ENSLAFG00000011812) ##27	CMKLR2 (ENSLAFG00000009005)	ZDBF2 (ENSLAFG00000014253) #29	ADAM23 (ENSLAFG00000014452) #30	DYTN (ENSLAFG00000032161) #32	MDH1B (ENSLAFG00000015578)	FASTKD2 (ENSLAFG00000005198)	CPO (ENSLAFG00000009772)	KLF7 (ENSLAFG00000005822)	CREB1 (ENSLAFG00000013257)	METTL21A (ENSLAFG00000017103)	ENSLAFG00000021558	FZD5 (ENSLAFG00000017105)
Hyrax	MODERN SPECIES	1502																NRP2 (ENSPCAG00000005335) #22
Tenrec	MODERN SPECIES	1860																NRP2 (ENSETEG00000008308) #22
Xenarthra	ANCESTRAL SPECIES	686										ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22
Armadillo	MODERN SPECIES	1677															ENSDNOG00000036872 #21	NRP2 (ENSDNOG00000033847) #22
Sloth	MODERN SPECIES	1678																NRP2 (ENSCHOG00000012420) #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000155877	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Opossum	MODERN SPECIES	6	ICA1L (ENSMODG00000016279) #9	WDR12 (ENSMODG00000016275) #10	CARF (ENSMODG00000016272) #11	ENSMODG00000047566	NBEAL1 (ENSMODG00000016268) #12	ENSMODG00000037522	CYP20A1 (ENSMODG00000016255) #14	ABI2 (ENSMODG00000016244) #15	ENSMODG00000016237 #16	CD28 (ENSMODG00000016234) #18	CTLA4 (ENSMODG00000016230) #19	ENSMODG00000025487 #20	ENSMODG00000024816	ENSMODG00000024817	PARD3B (ENSMODG00000016213) #21	NRP2 (ENSMODG00000016052) #22	ENSMODG00000016028	INO80D (ENSMODG00000016027) #25	NDUFS1 (ENSMODG00000016019) #26	EEF1B2 (ENSMODG00000016012) #27	GPR1 (ENSMODG00000046264)	ADAM23 (ENSMODG00000016005) #30	FAM237A (ENSMODG00000027693) #31	ENSMODG00000016001	FASTKD2 (ENSMODG00000015997)	CPO (ENSMODG00000015987)	KLF7 (ENSMODG00000015982)	CREB1 (ENSMODG00000015970)	METTL21A (ENSMODG00000015959)	ENSMODG00000015954	FZD5 (ENSMODG00000015949)
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270.c #22	ENSGT00940000155877	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00940000153534.A.a	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270.c #22	ENSGT00940000155877	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT01030000234979.a	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270.c #22	ENSGT00940000155877	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
koala	MODERN SPECIES	231	FAM117B (ENSPCIG00000008837) #8	ICA1L (ENSPCIG00000008836) #9	WDR12 (ENSPCIG00000008835) #10	CARF (ENSPCIG00000008833) #11	NBEAL1 (ENSPCIG00000022908) #12	ENSPCIG00000022906	CYP20A1 (ENSPCIG00000022811) #14	ABI2 (ENSPCIG00000015338) #15	ENSPCIG00000015308 #16	ENSPCIG00000015292	CD28 (ENSPCIG00000015286) #18	CTLA4 (ENSPCIG00000015278) #19	ENSPCIG00000015275 #20	PARD3B (ENSPCIG00000006317) #21	ENSPCIG00000006319	NRP2 (ENSPCIG00000006323) #22	ENSPCIG00000006327	INO80D (ENSPCIG00000006328) #25	NDUFS1 (ENSPCIG00000009914) #26	ENSPCIG00000009878 #27	CMKLR2 (ENSPCIG00000015684)
Common wonbat	MODERN SPECIES	1038	ICA1L (ENSVURG00010005759) #9	WDR12 (ENSVURG00010005744) #10	CARF (ENSVURG00010005670) #11	NBEAL1 (ENSVURG00010005633) #12	ENSVURG00010005614	CYP20A1 (ENSVURG00010005594) #14	ABI2 (ENSVURG00010005572) #15	RAPH1 (ENSVURG00010005515) #16	ENSVURG00010005495	ENSVURG00010005489	CD28 (ENSVURG00010005486) #18	CTLA4 (ENSVURG00010005475) #19	ENSVURG00010005458 #20	ENSVURG00010005443	PARD3B (ENSVURG00010005402) #21	NRP2 (ENSVURG00010005142) #22	ENSVURG00010005096	INO80D (ENSVURG00010005077) #25	NDUFS1 (ENSVURG00010005021) #26	ENSVURG00010004989 #27	CMKLR2 (ENSVURG00010004980)	ENSVURG00010004970	ENSVURG00010004965 #29	FAM237A (ENSVURG00010004897) #31	MDH1B (ENSVURG00010004893)	FASTKD2 (ENSVURG00010004867)	CPO (ENSVURG00010004833)	ENSVURG00010004815	KLF7 (ENSVURG00010004801)	CREB1 (ENSVURG00010004759)	METTL21A (ENSVURG00010004735)
Wallaby	MODERN SPECIES	2706																NRP2 (ENSMEUG00000015331) #22
Tasmanian devil	MODERN SPECIES	2	FAM117B (ENSSHAG00000008247) #8	ICA1L (ENSSHAG00000007656) #9	WDR12 (ENSSHAG00000006960) #10	CARF (ENSSHAG00000006210) #11	NBEAL1 (ENSSHAG00000000284) #12	ENSSHAG00000021267	CYP20A1 (ENSSHAG00000028734) #14	ABI2 (ENSSHAG00000008450) #15	ENSSHAG00000007679 #16	CD28 (ENSSHAG00000028743) #18	CTLA4 (ENSSHAG00000016177) #19	ENSSHAG00000015832 #20	ENSSHAG00000024535	PARD3B (ENSSHAG00000001616) #21	ENSSHAG00000024159 #22	ENSSHAG00000018322 #22	ENSSHAG00000026001	INO80D (ENSSHAG00000029318) #25	NDUFS1 (ENSSHAG00000017865) #26	EEF1B2 (ENSSHAG00000017853) #27	CMKLR2 (ENSSHAG00000021936)	ENSSHAG00000028209 #29	ADAM23 (ENSSHAG00000017245) #30	FAM237A (ENSSHAG00000017064) #31	MDH1B (ENSSHAG00000016820)	ENSSHAG00000016740	ENSSHAG00000022521	CPO (ENSSHAG00000026232)	KLF7 (ENSSHAG00000015861)	CREB1 (ENSSHAG00000013905)	METTL21A (ENSSHAG00000013828)
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000155270.d #22
Tasmanian devil	MODERN SPECIES	2	BMPR2 (ENSSHAG00000009795)	FAM117B (ENSSHAG00000008247) #8	ICA1L (ENSSHAG00000007656) #9	WDR12 (ENSSHAG00000006960) #10	CARF (ENSSHAG00000006210) #11	NBEAL1 (ENSSHAG00000000284) #12	ENSSHAG00000021267	CYP20A1 (ENSSHAG00000028734) #14	ABI2 (ENSSHAG00000008450) #15	ENSSHAG00000007679 #16	CD28 (ENSSHAG00000028743) #18	CTLA4 (ENSSHAG00000016177) #19	ENSSHAG00000015832 #20	ENSSHAG00000024535	PARD3B (ENSSHAG00000001616) #21	ENSSHAG00000024159 #22	ENSSHAG00000018322 #22	ENSSHAG00000026001	INO80D (ENSSHAG00000029318) #25	NDUFS1 (ENSSHAG00000017865) #26	EEF1B2 (ENSSHAG00000017853) #27	CMKLR2 (ENSSHAG00000021936)	ENSSHAG00000028209 #29	ADAM23 (ENSSHAG00000017245) #30	FAM237A (ENSSHAG00000017064) #31	MDH1B (ENSSHAG00000016820)	ENSSHAG00000016740	ENSSHAG00000022521	CPO (ENSSHAG00000026232)	KLF7 (ENSSHAG00000015861)	CREB1 (ENSSHAG00000013905)
Platypus	MODERN SPECIES	18	ICA1L (ENSOANG00000011099) #9	WDR12 (ENSOANG00000011097) #10	CARF (ENSOANG00000011095) #11	NBEAL1 (ENSOANG00000011085) #12	ENSOANG00000009001	CYP20A1 (ENSOANG00000015019) #14	ABI2 (ENSOANG00000001380) #15	ENSOANG00000006769 #16	ENSOANG00000048576	CD28 (ENSOANG00000040633) #18	CTLA4 (ENSOANG00000010895) #19	ENSOANG00000007435 #20	ENSOANG00000041151	PARD3B (ENSOANG00000014041) #21	ENSOANG00000044745 #21	NRP2 (ENSOANG00000012962) #22	ENSOANG00000038688	INO80D (ENSOANG00000012965) #25	NDUFS1 (ENSOANG00000002321) #26	EEF1B2 (ENSOANG00000012964) #27	CMKLR2 (ENSOANG00000012797)	ADAM23 (ENSOANG00000000660) #30	FAM237A (ENSOANG00000045785) #31	MDH1B (ENSOANG00000000659)	ENSOANG00000020472	KLF7 (ENSOANG00000047076)	TIMM17A (ENSOANG00000043200)	LMOD1 (ENSOANG00000041996)	SHISA4 (ENSOANG00000009360)	IPO9 (ENSOANG00000009358)	ENSOANG00000009356
Sauria	ANCESTRAL SPECIES	32	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B
Episquamata	ANCESTRAL SPECIES		ENSGT00940000154319	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00930000150950.b #10	ENSGT00950000185065	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743	ENSGT00390000012547.b
Elapidae	ANCESTRAL SPECIES		ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00930000150950.b #10	ENSGT00950000185065	ENSGT00390000003964.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089.g #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743	ENSGT00960000187202	ENSGT00390000012547.b
Elapidae_a	ANCESTRAL SPECIES	39															ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743	ENSGT00960000187202	ENSGT00390000012547.b
Acanthophiinae	ANCESTRAL SPECIES	39															ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743	ENSGT00960000187202	ENSGT00390000012547.b
Mainland tiger snake	MODERN SPECIES	50														ENSNSUG00000005042	PARD3B (ENSNSUG00000005020) #21	NRP2 (ENSNSUG00000005004) #22	INO80D (ENSNSUG00000004988) #25	NDUFS1 (ENSNSUG00000004982) #26	EEF1B2 (ENSNSUG00000004974) #27	CMKLR2 (ENSNSUG00000004973)	ADAM23 (ENSNSUG00000004968) #30	MDH1B (ENSNSUG00000004966)	FASTKD2 (ENSNSUG00000004850)	KLF7 (ENSNSUG00000004849)	CREB1 (ENSNSUG00000004838)	METTL21A (ENSNSUG00000004836)	ENSNSUG00000004835	ENSNSUG00000004833	ENSNSUG00000004832	PLEKHM3 (ENSNSUG00000004824)	ENSNSUG00000004822
Eastern brown snake	MODERN SPECIES	36													ENSPTXG00000008221	ENSPTXG00000008219	PARD3B (ENSPTXG00000008179) #21	NRP2 (ENSPTXG00000008167) #22	INO80D (ENSPTXG00000008163) #25	NDUFS1 (ENSPTXG00000008161) #26	EEF1B2 (ENSPTXG00000008156) #27	CMKLR2 (ENSPTXG00000008154)	ADAM23 (ENSPTXG00000008147) #30	MDH1B (ENSPTXG00000008146)	FASTKD2 (ENSPTXG00000008144)	KLF7 (ENSPTXG00000008140)	CREB1 (ENSPTXG00000008139)	METTL21A (ENSPTXG00000008138)	ENSPTXG00000008137	ENSPTXG00000008136	PLEKHM3 (ENSPTXG00000008135)	IDH1 (ENSPTXG00000008132)	PIKFYVE (ENSPTXG00000007358)
Indian cobra	MODERN SPECIES		NOP58 (ENSNNAG00000008788)	BMPR2 (ENSNNAG00000008749)	FAM117B (ENSNNAG00000008713) #8	WDR12 (ENSNNAG00000008654) #10	ENSNNAG00000008600	NBEAL1 (ENSNNAG00000008400) #12	ENSNNAG00000008350	CYP20A1 (ENSNNAG00000008325) #14	ABI2 (ENSNNAG00000008284) #15	RAPH1 (ENSNNAG00000007996) #16	CD28 (ENSNNAG00000007953) #18	CTLA4 (ENSNNAG00000007939) #19	ICOS (ENSNNAG00000007918) #20	ENSNNAG00000007910	PARD3B (ENSNNAG00000007817) #21	NRP2 (ENSNNAG00000007682) #22	INO80D (ENSNNAG00000007613) #25	NDUFS1 (ENSNNAG00000007093) #26	EEF1B2 (ENSNNAG00000006992) #27	CMKLR2 (ENSNNAG00000006981)	ADAM23 (ENSNNAG00000006219) #30	MDH1B (ENSNNAG00000006119)	FASTKD2 (ENSNNAG00000006083)	KLF7 (ENSNNAG00000006050)	CREB1 (ENSNNAG00000006029)	METTL21A (ENSNNAG00000005999)	ENSNNAG00000005945	ENSNNAG00000005932	PLEKHM3 (ENSNNAG00000005905)	ENSNNAG00000005842	ENSNNAG00000005828
Lizard	MODERN SPECIES	822	FAM117B (ENSACAG00000004859) #8	WDR12 (ENSACAG00000004774) #10	ENSACAG00000004755	ENSACAG00000043702	ENSACAG00000037627	NBEAL1 (ENSACAG00000004721) #12	ENSACAG00000004658	CYP20A1 (ENSACAG00000004604) #14	ENSACAG00000045333	ABI2 (ENSACAG00000004539) #15	RAPH1 (ENSACAG00000004500) #16	CD28 (ENSACAG00000004486) #18	ENSACAG00000028063 #19	ENSACAG00000037252	PARD3B (ENSACAG00000004428) #21	NRP2 (ENSACAG00000004128) #22	INO80D (ENSACAG00000004095) #25	NDUFS1 (ENSACAG00000001471) #26	CMKLR2 (ENSACAG00000001415)	EEF1B2 (ENSACAG00000001423) #27	ADAM23 (ENSACAG00000009477) #30	ENSACAG00000028631 #32	MDH1B (ENSACAG00000009563)	FASTKD2 (ENSACAG00000009610)	KLF7 (ENSACAG00000009642)
Laterata	ANCESTRAL SPECIES	42	ENSGT00940000158239.b	ENSGT00950000183314	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743
Argentine black and white tegu	MODERN SPECIES	12	KIAA2012 (ENSSMRG00000020790)	SUMO1 (ENSSMRG00000020789)	NOP58 (ENSSMRG00000020786)	BMPR2 (ENSSMRG00000020784)	FAM117B (ENSSMRG00000020783) #8	WDR12 (ENSSMRG00000020782) #10	ENSSMRG00000020781	NBEAL1 (ENSSMRG00000020780) #12	ENSSMRG00000020779	CYP20A1 (ENSSMRG00000020778) #14	ABI2 (ENSSMRG00000020777) #15	RAPH1 (ENSSMRG00000020776) #16	ENSSMRG00000020658	CTLA4 (ENSSMRG00000020651) #19	PARD3B (ENSSMRG00000020645) #21	NRP2 (ENSSMRG00000020640) #22	INO80D (ENSSMRG00000020639) #25	NDUFS1 (ENSSMRG00000020638) #26	EEF1B2 (ENSSMRG00000020633) #27	CMKLR2 (ENSSMRG00000020632)	ADAM23 (ENSSMRG00000020333) #30	FAM237A (ENSSMRG00000020332) #31	MDH1B (ENSSMRG00000020330)	FASTKD2 (ENSSMRG00000020328)	KLF7 (ENSSMRG00000020327)	CREB1 (ENSSMRG00000020325)	METTL21A (ENSSMRG00000020324)	ENSSMRG00000020322	ENSSMRG00000020321	PLEKHM3 (ENSSMRG00000020318)	C2orf80 (ENSSMRG00000020315)
Common wall lizard	MODERN SPECIES		ENSPMRG00000006832	ENSPMRG00000006842 ##9	WDR12 (ENSPMRG00000006856) #10	ENSPMRG00000006909	CARF (ENSPMRG00000006921) #11	ENSPMRG00000006930	NBEAL1 (ENSPMRG00000007358) #12	CYP20A1 (ENSPMRG00000008728) #14	ABI2 (ENSPMRG00000008747) #15	RAPH1 (ENSPMRG00000008789) #16	CD28 (ENSPMRG00000008873) #18	CTLA4 (ENSPMRG00000008883) #19	PARD3B (ENSPMRG00000008900) #21	ENSPMRG00000008928	ENSPMRG00000008932	NRP2 (ENSPMRG00000008950) #22	INO80D (ENSPMRG00000009029) #25	EEF1B2 (ENSPMRG00000009046) #27	NDUFS1 (ENSPMRG00000009096) #26	ADAM23 (ENSPMRG00000009258) #30	FAM237A (ENSPMRG00000009266) #31	DYTN (ENSPMRG00000000114) #32	ENSPMRG00000000134	ENSPMRG00000000143	FASTKD2 (ENSPMRG00000000149)	KLF7 (ENSPMRG00000000188)	CREB1 (ENSPMRG00000000233)	METTL21A (ENSPMRG00000000269)	ENSPMRG00000000296	ENSPMRG00000000317	ENSPMRG00000000354
tuatara	MODERN SPECIES	1738														ENSSPUG00000018429 #20	PARD3B (ENSSPUG00000018394) #21	NRP2 (ENSSPUG00000018362) #22
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00390000003964.b	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Emydidae	ANCESTRAL SPECIES	4	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
painted turtle	MODERN SPECIES	805												ENSCPBG00000015084	STK32A (ENSCPBG00000018970)	ENSCPBG00000019076	ENSCPBG00000019086 #21	NRP2 (ENSCPBG00000019110) #22	INO80D (ENSCPBG00000019181) #25	NDUFS1 (ENSCPBG00000019234) #26	EEF1B2 (ENSCPBG00000019285) #27	ENSCPBG00000019321	CMKLR2 (ENSCPBG00000019397)	ADAM23 (ENSCPBG00000019586) #30	FAM237A (ENSCPBG00000020040) #31	DYTN (ENSCPBG00000020053) #32	MDH1B (ENSCPBG00000020070)	FASTKD2 (ENSCPBG00000020108)	CPO (ENSCPBG00000020174)	KLF7 (ENSCPBG00000020188)	CREB1 (ENSCPBG00000020191)	METTL21A (ENSCPBG00000020196)	ENSCPBG00000020210
Three-toed box turtle	MODERN SPECIES	25	NOP58 (ENSTMTG00000010944)	BMPR2 (ENSTMTG00000011025)	FAM117B (ENSTMTG00000011056) #8	ICA1L (ENSTMTG00000011077) #9	WDR12 (ENSTMTG00000011113) #10	CARF (ENSTMTG00000011136) #11	ENSTMTG00000011258	NBEAL1 (ENSTMTG00000011535) #12	ENSTMTG00000000064	ABI2 (ENSTMTG00000000124) #15	RAPH1 (ENSTMTG00000000330) #16	CD28 (ENSTMTG00000000707) #18	CTLA4 (ENSTMTG00000000717) #19	ICOS (ENSTMTG00000000728) #20	PARD3B (ENSTMTG00000000749) #21	NRP2 (ENSTMTG00000000762) #22	INO80D (ENSTMTG00000000797) #25	NDUFS1 (ENSTMTG00000000828) #26	EEF1B2 (ENSTMTG00000000857) #27	CMKLR2 (ENSTMTG00000000886)	ADAM23 (ENSTMTG00000000910) #30	FAM237A (ENSTMTG00000000963) #31	DYTN (ENSTMTG00000000982) #32	MDH1B (ENSTMTG00000001002)	FASTKD2 (ENSTMTG00000001072)	CPO (ENSTMTG00000001098)	KLF7 (ENSTMTG00000001122)	CREB1 (ENSTMTG00000001136)	METTL21A (ENSTMTG00000001153)	ENSTMTG00000001162	ENSTMTG00000001184
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000176171	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00960000187394	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Goode s thornscrub tortoise	MODERN SPECIES	2	ICA1L (ENSGEVG00005011235) #9	WDR12 (ENSGEVG00005011195) #10	CARF (ENSGEVG00005011158) #11	ENSGEVG00005011079	NBEAL1 (ENSGEVG00005007841) #12	ENSGEVG00005007312	CYP20A1 (ENSGEVG00005007271) #14	ENSGEVG00005007253	ABI2 (ENSGEVG00005007221) #15	RAPH1 (ENSGEVG00005007171) #16	CD28 (ENSGEVG00005007000) #18	CTLA4 (ENSGEVG00005006968) #19	ICOS (ENSGEVG00005006946) #20	PARD3B (ENSGEVG00005006583) #21	ENSGEVG00005006463	NRP2 (ENSGEVG00005006393) #22	INO80D (ENSGEVG00005006347) #25	NDUFS1 (ENSGEVG00005006314) #26	EEF1B2 (ENSGEVG00005006284) #27	CMKLR2 (ENSGEVG00005006269)	ENSGEVG00005006255 #29	ADAM23 (ENSGEVG00005006163) #30	FAM237A (ENSGEVG00005006142) #31	DYTN (ENSGEVG00005006111) #32	MDH1B (ENSGEVG00005006096)	FASTKD2 (ENSGEVG00005006068)	CPO (ENSGEVG00005005978)	KLF7 (ENSGEVG00005005958)	CREB1 (ENSGEVG00005005883)	METTL21A (ENSGEVG00005005862)	ENSGEVG00005005842
Abingdon island giant tortoise	MODERN SPECIES	668															ENSCABG00000003073 #21	NRP2 (ENSCABG00000003082) #22	INO80D (ENSCABG00000003095) #25	NDUFS1 (ENSCABG00000003121) #26	EEF1B2 (ENSCABG00000003323) #27	ENSCABG00000003325	CMKLR2 (ENSCABG00000003336)
Chinese turtle	MODERN SPECIES	677	ENSPSIG00000018140	ENSPSIG00000018142	ENSPSIG00000003550	ENSPSIG00000003565	ENSPSIG00000003574	BZW1 (ENSPSIG00000003613)	CLK1 (ENSPSIG00000003762)	PPIL3 (ENSPSIG00000003967)	NIF3L1 (ENSPSIG00000004085)	ORC2 (ENSPSIG00000004159)	HYCC2 (ENSPSIG00000004753)	NDUFB3 (ENSPSIG00000004805)	CFLAR (ENSPSIG00000004865)	ENSPSIG00000001200	PARD3B (ENSPSIG00000004999) #21	NRP2 (ENSPSIG00000005456) #22
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00950000185065	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Aves	ANCESTRAL SPECIES	8	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000159232	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408.b	ENSGT00940000157249	ENSGT00940000154453.b.d
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408.b	ENSGT00940000157249	ENSGT00940000154453.b.d	ENSGT00940000161191.B	ENSGT00940000159743
Duck	MODERN SPECIES	25	IDH1 (ENSAPLG00000014810)	ENSAPLG00000015011	ENSAPLG00000018471	ENSAPLG00000024504	ENSAPLG00000017302 #12	ENSAPLG00000027901 #12	ENSAPLG00000025723	ENSAPLG00000025132	CYP20A1 (ENSAPLG00000015942) #14	ABI2 (ENSAPLG00000016216) #15	RAPH1 (ENSAPLG00000000860) #16	CD28 (ENSAPLG00000001723) #18	CTLA4 (ENSAPLG00000001966) #19	ICOS (ENSAPLG00000002410) #20	PARD3B (ENSAPLG00000002583) #21	NRP2 (ENSAPLG00000002735) #22	INO80D (ENSAPLG00000004131) #25	NDUFS1 (ENSAPLG00000004262) #26	EEF1B2 (ENSAPLG00000004841) #27	CMKLR2 (ENSAPLG00000001630)	ADAM23 (ENSAPLG00000005205) #30	FAM237A (ENSAPLG00000005882) #31	ENSAPLG00000005888	MDH1B (ENSAPLG00000006087)	FASTKD2 (ENSAPLG00000006177)	CPO (ENSAPLG00000006729)	KLF7 (ENSAPLG00000006752)	CREB1 (ENSAPLG00000006786)	METTL21A (ENSAPLG00000007133)	ENSAPLG00000007167	ENSAPLG00000001632
Pink-footed goose	MODERN SPECIES	120										ABI2 (ENSABRG00000018029) #15	RAPH1 (ENSABRG00000018013) #16	CD28 (ENSABRG00000018006) #18	CTLA4 (ENSABRG00000018000) #19	ICOS (ENSABRG00000017991) #20	PARD3B (ENSABRG00000017834) #21	NRP2 (ENSABRG00000017280) #22	INO80D (ENSABRG00000017222) #25	NDUFS1 (ENSABRG00000017107) #26	EEF1B2 (ENSABRG00000017085) #27	CMKLR2 (ENSABRG00000017081)	ADAM23 (ENSABRG00000016867) #30	FAM237A (ENSABRG00000016843) #31	MDH1B (ENSABRG00000016828)	FASTKD2 (ENSABRG00000016816)	CPO (ENSABRG00000016806)	KLF7 (ENSABRG00000016797)	CREB1 (ENSABRG00000016788)	ENSABRG00000016786	ENSABRG00000016702	ENSABRG00000016686	PLEKHM3 (ENSABRG00000016681)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408.b	ENSGT00940000157249	ENSGT00940000154453.b.d
Japanese quail	MODERN SPECIES	25	KLF7 (ENSCJPG00005015354)	CPO (ENSCJPG00005015355)	FASTKD2 (ENSCJPG00005015357)	MDH1B (ENSCJPG00005015360)	ADAM23 (ENSCJPG00005015363) #30	CMKLR2 (ENSCJPG00005015367)	RAPH1 (ENSCJPG00005015370) #16	ENSCJPG00005015375	CD28 (ENSCJPG00005015378) #18	CTLA4 (ENSCJPG00005015379) #19	ICOS (ENSCJPG00005015381) #20	PARD3B (ENSCJPG00005015409) #21	ENSCJPG00005015846	ENSCJPG00005015847	ENSCJPG00005015848	NRP2 (ENSCJPG00005015851) #22	INO80D (ENSCJPG00005015857) #25	NDUFS1 (ENSCJPG00005015858) #26	EEF1B2 (ENSCJPG00005015859) #27	ABI2 (ENSCJPG00005015864) #15	CYP20A1 (ENSCJPG00005015897) #14	ENSCJPG00005015898	NBEAL1 (ENSCJPG00005015909) #12	ENSCJPG00005016282	IDH1 (ENSCJPG00005016283)	PIKFYVE (ENSCJPG00005016284)	DNAJC10 (ENSCJPG00005016431)	PDE1A (ENSCJPG00005016432)	PPP1R1C (ENSCJPG00005016722)	ITPRID2 (ENSCJPG00005016723)	NEUROD1 (ENSCJPG00005016724)
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408.b	ENSGT00940000157249	ENSGT00940000154453.b.d
Chicken	MODERN SPECIES	36	PPP1R1C (ENSGALG00010022396)	PDE1A (ENSGALG00010022334)	DNAJC10 (ENSGALG00010022293)	PIKFYVE (ENSGALG00010022245)	IDH1 (ENSGALG00010022213)	ENSGALG00010022181	NBEAL1 (ENSGALG00010022149) #12	ENSGALG00010022124	CYP20A1 (ENSGALG00010022116) #14	ABI2 (ENSGALG00010022079) #15	RAPH1 (ENSGALG00010022033) #16	CD28 (ENSGALG00010021995) #18	CTLA4 (ENSGALG00010021983) #19	ICOS (ENSGALG00010021971) #20	PARD3B (ENSGALG00010021734) #21	NRP2 (ENSGALG00010026008) #22	INO80D (ENSGALG00010025994) #25	NDUFS1 (ENSGALG00010025984) #26	EEF1B2 (ENSGALG00010025974) #27	GPR1 (ENSGALG00010025960)	ENSGALG00010025836 #29	ADAM23 (ENSGALG00010026825) #30	FAM237A (ENSGALG00010025900) #31	DYTN (ENSGALG00010025894) #32	MDH1B (ENSGALG00010025874)	FASTKD2 (ENSGALG00010025869)	CPO (ENSGALG00010025855)	KLF7 (ENSGALG00010025822)	CREB1 (ENSGALG00010025351)	METTL21A (ENSGALG00010025340)	FZD5 (ENSGALG00010025333)
Turkey	MODERN SPECIES	27	ITPRID2 (ENSMGAG00000009083)	PPP1R1C (ENSMGAG00000009069)	PDE1A (ENSMGAG00000009032)	ENSMGAG00000008939	ENSMGAG00000008920	ENSMGAG00000008985	ENSMGAG00000019768	NBEAL1 (ENSMGAG00000008870) #12	ENSMGAG00000019797	CYP20A1 (ENSMGAG00000008831) #14	ABI2 (ENSMGAG00000008821) #15	RAPH1 (ENSMGAG00000008794) #16	CD28 (ENSMGAG00000008783) #18	CTLA4 (ENSMGAG00000008759) #19	ICOS (ENSMGAG00000008751) #20	ENSMGAG00000021009 #22	PARD3B (ENSMGAG00000008728) #21	INO80D (ENSMGAG00000008621) #25	NDUFS1 (ENSMGAG00000008573) #26	EEF1B2 (ENSMGAG00000008548) #27	CMKLR2 (ENSMGAG00000016159)	ADAM23 (ENSMGAG00000008433) #30	FAM237A (ENSMGAG00000020531) #31	MDH1B (ENSMGAG00000008532)	FASTKD2 (ENSMGAG00000008516)	CPO (ENSMGAG00000008430)	KLF7 (ENSMGAG00000008396)	CREB1 (ENSMGAG00000008360)	METTL21A (ENSMGAG00000008350)	ENSMGAG00000008327	ENSMGAG00000016153
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642	ENSGT00440000037606.b #29	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Golden eagle	MODERN SPECIES	22	PIKFYVE (ENSACCG00020002433)	IDH1 (ENSACCG00020002412)	ENSACCG00020002399	ENSACCG00020002387	ENSACCG00020002374	ENSACCG00020002359	NBEAL1 (ENSACCG00020001867) #12	ENSACCG00020001270	CYP20A1 (ENSACCG00020001252) #14	ABI2 (ENSACCG00020001210) #15	RAPH1 (ENSACCG00020001057) #16	CD28 (ENSACCG00020000853) #18	CTLA4 (ENSACCG00020000823) #19	ICOS (ENSACCG00020000759) #20	PARD3B (ENSACCG00020000685) #21	NRP2 (ENSACCG00020000561) #22	INO80D (ENSACCG00020000521) #25	NDUFS1 (ENSACCG00020000486) #26	EEF1B2 (ENSACCG00020000452) #27	CMKLR2 (ENSACCG00020000445)	ADAM23 (ENSACCG00020000416) #30	FAM237A (ENSACCG00020000352) #31	DYTN (ENSACCG00020000333) #32	MDH1B (ENSACCG00020000316)	FASTKD2 (ENSACCG00020003396)	CPO (ENSACCG00020003371)	KLF7 (ENSACCG00020003351)	CREB1 (ENSACCG00020003332)	METTL21A (ENSACCG00020003321)	ENSACCG00020003303	ENSACCG00020003288
Kakapo	MODERN SPECIES	22	ENSSHBG00005005122	ENSSHBG00005005117	IDH1 (ENSSHBG00005005110)	ENSSHBG00005005104	C2orf80 (ENSSHBG00005005096)	ENSSHBG00005005091	NBEAL1 (ENSSHBG00005003608) #12	ENSSHBG00005002906	CYP20A1 (ENSSHBG00005002889) #14	ABI2 (ENSSHBG00005002858) #15	RAPH1 (ENSSHBG00005002809) #16	CTLA4 (ENSSHBG00005002762) #19	ICOS (ENSSHBG00005002727) #20	PARD3B (ENSSHBG00005002706) #21	ENSSHBG00005002675 #21	NRP2 (ENSSHBG00005002621) #22	INO80D (ENSSHBG00005002582) #25	NDUFS1 (ENSSHBG00005002546) #26	EEF1B2 (ENSSHBG00005002514) #27	CMKLR2 (ENSSHBG00005002504)	ENSSHBG00005002492 #29	ADAM23 (ENSSHBG00005002434) #30	FAM237A (ENSSHBG00005002374) #31	MDH1B (ENSSHBG00005002354)	FASTKD2 (ENSSHBG00005002335)	CPO (ENSSHBG00005002311)	KLF7 (ENSSHBG00005002296)	CREB1 (ENSSHBG00005002287)	METTL21A (ENSSHBG00005002278)	ENSSHBG00005002269	ENSSHBG00005002253
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00940000162403 #32	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00970000193449	ENSGT00940000160642	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B
Common canary	MODERN SPECIES	8	PPP1R1C (ENSSCAG00000001436)	PDE1A (ENSSCAG00000001471)	DNAJC10 (ENSSCAG00000001534)	PIKFYVE (ENSSCAG00000001572)	IDH1 (ENSSCAG00000001636)	ENSSCAG00000001645	NBEAL1 (ENSSCAG00000001665) #12	ENSSCAG00000001706	CYP20A1 (ENSSCAG00000001710) #14	ABI2 (ENSSCAG00000001723) #15	RAPH1 (ENSSCAG00000001749) #16	CD28 (ENSSCAG00000001788) #18	CTLA4 (ENSSCAG00000001805) #19	ICOS (ENSSCAG00000001811) #20	PARD3B (ENSSCAG00000001874) #21	NRP2 (ENSSCAG00000002055) #22	INO80D (ENSSCAG00000002336) #25	NDUFS1 (ENSSCAG00000002344) #26	EEF1B2 (ENSSCAG00000002352) #27	ENSSCAG00000002359	CMKLR2 (ENSSCAG00000002370)	ADAM23 (ENSSCAG00000002375) #30	FAM237A (ENSSCAG00000002412) #31	MDH1B (ENSSCAG00000002419)	FASTKD2 (ENSSCAG00000002424)	CPO (ENSSCAG00000002428)	KLF7 (ENSSCAG00000002434)	CREB1 (ENSSCAG00000002440)	METTL21A (ENSSCAG00000002451)	ENSSCAG00000002462	ENSSCAG00000002470
Zebra finch	MODERN SPECIES	29	DNAJC10 (ENSTGUG00000009565)	PIKFYVE (ENSTGUG00000009607)	ENSTGUG00000028065	IDH1 (ENSTGUG00000023800)	ENSTGUG00000018851	NBEAL1 (ENSTGUG00000029141) #12	ENSTGUG00000025723	CYP20A1 (ENSTGUG00000009709) #14	ABI2 (ENSTGUG00000009728) #15	RAPH1 (ENSTGUG00000009747) #16	CD28 (ENSTGUG00000016732) #18	CTLA4 (ENSTGUG00000009756) #19	ICOS (ENSTGUG00000009766) #20	ENSTGUG00000025370	PARD3B (ENSTGUG00000009770) #21	NRP2 (ENSTGUG00000009797) #22	INO80D (ENSTGUG00000009890) #25	NDUFS1 (ENSTGUG00000009895) #26	EEF1B2 (ENSTGUG00000009931) #27	CMKLR2 (ENSTGUG00000009954)	ADAM23 (ENSTGUG00000009963) #30	DYTN (ENSTGUG00000027316) #32	FAM237A (ENSTGUG00000009992) #31	MDH1B (ENSTGUG00000009999)	FASTKD2 (ENSTGUG00000010004)	CPO (ENSTGUG00000010012)	KLF7 (ENSTGUG00000010017)	CREB1 (ENSTGUG00000021110)	METTL21A (ENSTGUG00000010049)	ENSTGUG00000010055	ENSTGUG00000010062
Medium ground finch	MODERN SPECIES	1	PDE1A (ENSGFOG00000004634)	DNAJC10 (ENSGFOG00000004722)	PIKFYVE (ENSGFOG00000004768)	IDH1 (ENSGFOG00000004936)	ENSGFOG00000004948	NBEAL1 (ENSGFOG00000005037) #12	ENSGFOG00000006136	CYP20A1 (ENSGFOG00000006144) #14	ABI2 (ENSGFOG00000006158) #15	RAPH1 (ENSGFOG00000006191) #16	CD28 (ENSGFOG00000006204) #18	CTLA4 (ENSGFOG00000006210) #19	ICOS (ENSGFOG00000006216) #20	ENSGFOG00000006219	PARD3B (ENSGFOG00000006247) #21	NRP2 (ENSGFOG00000006567) #22	INO80D (ENSGFOG00000006596) #25	NDUFS1 (ENSGFOG00000006610) #26	EEF1B2 (ENSGFOG00000006636) #27	ENSGFOG00000006645	CMKLR2 (ENSGFOG00000006655)	ADAM23 (ENSGFOG00000006668) #30	FAM237A (ENSGFOG00000006747) #31	DYTN (ENSGFOG00000006753) #32	MDH1B (ENSGFOG00000006762)	FASTKD2 (ENSGFOG00000006769)	CPO (ENSGFOG00000006781)	KLF7 (ENSGFOG00000006789)	CREB1 (ENSGFOG00000006794)	METTL21A (ENSGFOG00000006799)	ENSGFOG00000006802
Flycatcher	MODERN SPECIES	26	ENSFALG00000003616	ENSFALG00000003629	ENSFALG00000003640	ENSFALG00000023124	ENSFALG00000023047 #12	ENSFALG00000003658 #12	ENSFALG00000003669	CYP20A1 (ENSFALG00000003678) #14	ABI2 (ENSFALG00000003705) #15	RAPH1 (ENSFALG00000003713) #16	CD28 (ENSFALG00000003718) #18	CTLA4 (ENSFALG00000003729) #19	ICOS (ENSFALG00000003743) #20	PARD3B (ENSFALG00000003749) #21	ENSFALG00000024358	NRP2 (ENSFALG00000003789) #22	INO80D (ENSFALG00000003838) #25	NDUFS1 (ENSFALG00000003849) #26	EEF1B2 (ENSFALG00000003879) #27	CMKLR2 (ENSFALG00000015287)	ADAM23 (ENSFALG00000003913) #30	FAM237A (ENSFALG00000003948) #31	DYTN (ENSFALG00000003952) #32	MDH1B (ENSFALG00000003957)	FASTKD2 (ENSFALG00000003964)	CPO (ENSFALG00000003980)	KLF7 (ENSFALG00000003989)	ENSFALG00000023985	CREB1 (ENSFALG00000003996)	METTL21A (ENSFALG00000004003)	ENSFALG00000027089
Great tit	MODERN SPECIES	27	PPP1R1C (ENSPMJG00000018351)	PDE1A (ENSPMJG00000018348)	DNAJC10 (ENSPMJG00000018346)	PIKFYVE (ENSPMJG00000018335)	IDH1 (ENSPMJG00000018333)	ENSPMJG00000018332	NBEAL1 (ENSPMJG00000018330) #12	ENSPMJG00000018329	CYP20A1 (ENSPMJG00000018328) #14	ABI2 (ENSPMJG00000018327) #15	RAPH1 (ENSPMJG00000018308) #16	CD28 (ENSPMJG00000018298) #18	CTLA4 (ENSPMJG00000018297) #19	ICOS (ENSPMJG00000018295) #20	PARD3B (ENSPMJG00000018290) #21	NRP2 (ENSPMJG00000018287) #22	INO80D (ENSPMJG00000018285) #25	NDUFS1 (ENSPMJG00000018281) #26	EEF1B2 (ENSPMJG00000018274) #27	CMKLR2 (ENSPMJG00000018273)	ADAM23 (ENSPMJG00000018267) #30	FAM237A (ENSPMJG00000018264) #31	DYTN (ENSPMJG00000018263) #32	MDH1B (ENSPMJG00000018262)	FASTKD2 (ENSPMJG00000018261)	CPO (ENSPMJG00000018259)	KLF7 (ENSPMJG00000018257)	CREB1 (ENSPMJG00000018256)	METTL21A (ENSPMJG00000018255)	ENSPMJG00000018252	ENSPMJG00000018250
African ostrich	MODERN SPECIES	602															ENSSCUG00000009062 #21	NRP2 (ENSSCUG00000009065) #22	INO80D (ENSSCUG00000009069) #25	NDUFS1 (ENSSCUG00000009074) #26	EEF1B2 (ENSSCUG00000009076) #27	CMKLR2 (ENSSCUG00000009084)	ADAM23 (ENSSCUG00000009094) #30	FAM237A (ENSSCUG00000009115) #31	DYTN (ENSSCUG00000009118) #32	MDH1B (ENSSCUG00000009125)	FASTKD2 (ENSSCUG00000009126)	CPO (ENSSCUG00000009130)	KLF7 (ENSSCUG00000009135)	CREB1 (ENSSCUG00000009137)	METTL21A (ENSSCUG00000009140)	ENSSCUG00000009142	PLEKHM3 (ENSSCUG00000009146)
Australian saltwater crocodile	MODERN SPECIES	66	FAM117B (ENSCPRG00005001420) #8	ENSCPRG00005001426	WDR12 (ENSCPRG00005001450) #10	CARF (ENSCPRG00005001462) #11	ENSCPRG00005001474	NBEAL1 (ENSCPRG00005001495) #12	ENSCPRG00005001521	CYP20A1 (ENSCPRG00005001526) #14	ABI2 (ENSCPRG00005001556) #15	RAPH1 (ENSCPRG00005001588) #16	CD28 (ENSCPRG00005001690) #18	CTLA4 (ENSCPRG00005001699) #19	ICOS (ENSCPRG00005001703) #20	ENSCPRG00005001708	PARD3B (ENSCPRG00005001781) #21	NRP2 (ENSCPRG00005001802) #22	INO80D (ENSCPRG00005001847) #25	NDUFS1 (ENSCPRG00005001849) #26	EEF1B2 (ENSCPRG00005001854) #27	CMKLR2 (ENSCPRG00005001863)	ADAM23 (ENSCPRG00005001887) #30	FAM237A (ENSCPRG00005001904) #31	DYTN (ENSCPRG00005001912) #32	MDH1B (ENSCPRG00005001923)	FASTKD2 (ENSCPRG00005001926)	CPO (ENSCPRG00005001934)	KLF7 (ENSCPRG00005001954)	CREB1 (ENSCPRG00005001961)	METTL21A (ENSCPRG00005001979)	ENSCPRG00005001990	ENSCPRG00005002000
Anura	ANCESTRAL SPECIES	39	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a #8	ENSGT00390000005530.a.a #9	ENSGT00930000150950.b #10	ENSGT00390000013916 #11	ENSGT00940000155041 #12	ENSGT00390000017619	ENSGT00500000044939 #14	ENSGT00940000156089 #15	ENSGT00940000156552 #16	ENSGT00530000063873.A #18	ENSGT00530000063873.B #19	ENSGT00390000000801 #20	ENSGT00950000183214.a.b.a.b #21	ENSGT00940000155270 #22	ENSGT00940000157974 #25	ENSGT00940000153514.b #26	ENSGT00950000183014.f.a #27	ENSGT00940000160642.b	ENSGT00940000158781 #30	ENSGT00390000015769.B #31	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00940000161508.d	ENSGT00940000155235	ENSGT00940000155408	ENSGT00940000157249	ENSGT00940000154453.b	ENSGT00940000161191.B	ENSGT00940000159743
Frog	MODERN SPECIES	9	nbeal1 (ENSXETG00000022086) #12	carf (ENSXETG00000031604) #11	wdr12 (ENSXETG00000022077) #10	fam117b (ENSXETG00000022076) #8	bmpr2 (ENSXETG00000022074)	nop58 (ENSXETG00000022073)	sumo1 (ENSXETG00000022072)	kiaa2012 (ENSXETG00000041127)	fzd7 (ENSXETG00000012404)	ENSXETG00000040147	ENSXETG00000037714	cdk15 (ENSXETG00000012405)	als2 (ENSXETG00000012406)	ICOS (ENSXETG00000040525) #20	pard3b (ENSXETG00000012407) #21	nrp2 (ENSXETG00000010095) #22	ENSXETG00000048152	ino80d (ENSXETG00000033629) #25	eef1b2 (ENSXETG00000010098) #27	ndufs1 (ENSXETG00000010108) #26	cops8 (ENSXETG00000025427)	cmklr2 (ENSXETG00000043302)	ENSXETG00000042410	ENSXETG00000046685	adam23 (ENSXETG00000010118) #30	ENSXETG00000044734	mdh1b (ENSXETG00000034073)	fastkd2 (ENSXETG00000031283)	ENSXETG00000048816	klf7 (ENSXETG00000046427)	creb1 (ENSXETG00000016392)
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000011716	CYP20A1 (ENSLLEG00000011493) #14	ENSLLEG00000011462	ABI2 (ENSLLEG00000010961) #15	RAPH1 (ENSLLEG00000010703) #16	ENSLLEG00000010668	CD28 (ENSLLEG00000010533) #18	CTLA4 (ENSLLEG00000010451) #19	ENSLLEG00000010351	ENSLLEG00000010325	ENSLLEG00000010283	ENSLLEG00000010251	ENSLLEG00000010225	PARD3B (ENSLLEG00000009175) #21	ENSLLEG00000009072	NRP2 (ENSLLEG00000008733) #22	DUSP19 (ENSLLEG00000008672)	NCKAP1 (ENSLLEG00000007431)	FRZB (ENSLLEG00000007263)	ENSLLEG00000006981	PDE1A (ENSLLEG00000006725)	PPP1R1C (ENSLLEG00000006668)	ITPRID2 (ENSLLEG00000006600)	NEUROD1 (ENSLLEG00000006576)	CERKL (ENSLLEG00000006429)	ITGA4 (ENSLLEG00000006184)	ENSLLEG00000006132	UBE2E3 (ENSLLEG00000006049)	ENSLLEG00000006014	ENSLLEG00000006002	CWC22 (ENSLLEG00000005755)
Coelacanth	MODERN SPECIES	669														PARD3B (ENSLACG00000003766) #21	ENSLACG00000013079 ##21	NRP2 (ENSLACG00000013759) #22	INO80D (ENSLACG00000015319) #25	NDUFS1 (ENSLACG00000015589) #26	EEF1B2 (ENSLACG00000015714) #27	CMKLR2 (ENSLACG00000015809)