Percora_a	ANCESTRAL SPECIES	16	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985 #7	ENSGT00600000084617 #8	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.a #15	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000163667.a.c.a.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p #36	ENSGT00940000160376 #37	ENSGT00390000011639
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000154853.d.a.b.b #12	ENSGT00940000154853.d.a.b.a.b ##11	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.a #15	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000163667.a.c.b #19	ENSGT00940000163667.a.c.a.b.b.b ##18	ENSGT00940000163667.a.c.a.b.b.a ##18	ENSGT00940000163667.a.c.a.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p #36	ENSGT00940000160376 #37	ENSGT00390000011639
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000154853.d.a.b.b #12	ENSGT00940000154853.d.a.b.a.b ##11	ENSGT00940000154853.d.a.b.a.a ##11	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.a #15	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000161239.l ##15	ENSGT00940000163667.a.c.b #19	ENSGT00940000163667.a.c.a.a.c #21	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Rambouillet Sheep	MODERN SPECIES	13	SPINDOC (ENSOARG00020023441) #7	ZFTA (ENSOARG00020023427) #8	RTN3 (ENSOARG00020023116) #9	ATL3 (ENSOARG00020022978) #10	ENSOARG00020022912 #11	ENSOARG00020022856 #12	LGALS12 (ENSOARG00020022698) #13	PLAAT5 (ENSOARG00020022652) #14	ENSOARG00020022597 #15	ENSOARG00020022570 #16	ENSOARG00020022539 #17	ENSOARG00020022510 #18	ENSOARG00020022414 #19	ENSOARG00020022359 #20	ENSOARG00020022311 #21	SLC22A8 (ENSOARG00020022122) #22	SLC22A6 (ENSOARG00020022001) #23	ENSOARG00020021949 #24	CHRM1 (ENSOARG00020021898) #25	SLC3A2 (ENSOARG00020021842) #26	WDR74 (ENSOARG00020021626) #27	STX5 (ENSOARG00020021530) #28	NXF1 (ENSOARG00020021483) #29	TMEM223 (ENSOARG00020021462) #30	TMEM179B (ENSOARG00020021391) #31	TAF6L (ENSOARG00020021329) #32	POLR2G (ENSOARG00020021260) #33	ZBTB3 (ENSOARG00020021245) #34	ENSOARG00020021233 #35	TTC9C (ENSOARG00020021198) #36	HNRNPUL2 (ENSOARG00020021145) #37
Goat	MODERN SPECIES	21	SPINDOC (ENSCHIG00000009623) #7	ZFTA (ENSCHIG00000022847) #8	ENSCHIG00000014185 #9	ATL3 (ENSCHIG00000022420) #10	ENSCHIG00000024459 #11	ENSCHIG00000014874 ##11	ENSCHIG00000016166 #12	ENSCHIG00000003540 #13	ENSCHIG00000011083 ##11	ENSCHIG00000020309 #13	PLAAT5 (ENSCHIG00000005227) #14	SLC22A9 (ENSCHIG00000000518) #15	ENSCHIG00000004328 ##15	ENSCHIG00000025065 #19	ENSCHIG00000012746 #21	SLC22A8 (ENSCHIG00000015089) #22	SLC22A6 (ENSCHIG00000023566) #23	ENSCHIG00000027134 #24	CHRM1 (ENSCHIG00000012488) #25	SLC3A2 (ENSCHIG00000017772) #26	WDR74 (ENSCHIG00000022750) #27	STX5 (ENSCHIG00000026215) #28	NXF1 (ENSCHIG00000010065) #29	TMEM223 (ENSCHIG00000020466) #30	TMEM179B (ENSCHIG00000026546) #31	TAF6L (ENSCHIG00000013919) #32	POLR2G (ENSCHIG00000023730) #33	ZBTB3 (ENSCHIG00000008054) #34	TTC9C (ENSCHIG00000014645) #36	HNRNPUL2 (ENSCHIG00000020213) #37	GNG3 (ENSCHIG00000015824)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00600000084617 #8	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000154853.d.a.b.b #12	ENSGT00940000154853.d.a.b.a.b ##11	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000163667.a.c.b #19	ENSGT00940000163667.a.c.a.b.b.b ##18	ENSGT00940000163667.a.c.a.b.b.a ##18	ENSGT00940000163667.a.c.a.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p #36	ENSGT00940000160376 #37	ENSGT00390000011639
Bos	ANCESTRAL SPECIES	11	ENSGT00940000155031	ENSGT00410000025985 #7	ENSGT00600000084617 #8	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000154853.d.a.b.b #12	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000163667.a.c.b #19	ENSGT00940000163667.a.c.a.b.b.b ##18	ENSGT00940000163667.a.c.a.b.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p.b #36	ENSGT00940000160376 #37	ENSGT00390000011639
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000155031	ENSGT00410000025985 #7	ENSGT00600000084617 #8	ENSGT00940000157482.d #9	ENSGT00940000158566 #10	ENSGT00940000154853.d.a.a #11	ENSGT00940000154853.d.a.b.b #12	ENSGT00940000161499 #13	ENSGT00940000162436 #14	ENSGT00940000161239.k.a.b #16	ENSGT00940000161239.k.b #17	ENSGT00940000163667.b #18	ENSGT00940000163667.a.c.b #19	ENSGT00940000163667.a.c.a.a #20	ENSGT00940000163667.a.c.a.b.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00940000162994.f.d.k.a.a.a	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p.a.a #36	ENSGT00940000161805.p.b #36
Hybrid Bos Indicus	MODERN SPECIES	21	MARK2 (ENSBIXG00005012594)	SPINDOC (ENSBIXG00005012481) #7	RTN3 (ENSBIXG00005012431) #9	ZFTA (ENSBIXG00005012369) #8	ATL3 (ENSBIXG00005012347) #10	ENSBIXG00005001297 #11	ENSBIXG00005012288 #12	LGALS12 (ENSBIXG00005012274) #13	PLAAT5 (ENSBIXG00005012206) #14	ENSBIXG00005012170 #17	ENSBIXG00005006329 #18	ENSBIXG00005011983	ENSBIXG00005011974 #20	ENSBIXG00005011910 ##18	ENSBIXG00005011899	SLC22A8 (ENSBIXG00005000435) #22	SLC22A6 (ENSBIXG00005011838) #23	ENSBIXG00005011826 #24	SLC3A2 (ENSBIXG00005011715) #26	ENSBIXG00005011601	WDR74 (ENSBIXG00005011524) #27	STX5 (ENSBIXG00005000467) #28	ENSBIXG00005011400	NXF1 (ENSBIXG00005011391) #29	TMEM223 (ENSBIXG00005011347) #30	TMEM179B (ENSBIXG00005011316) #31	TAF6L (ENSBIXG00005001087) #32	POLR2G (ENSBIXG00005011296) #33	TTC9C (ENSBIXG00005011271) #36	HNRNPUL2 (ENSBIXG00005006206) #37	BSCL2 (ENSBIXG00005011232)
Cow	MODERN SPECIES	21	PLA2G16 (ENSBTAG00000015248) #11	ENSBTAG00000052238	ENSBTAG00000054910	ENSBTAG00000011019 #12	ENSBTAG00000037645	LGALS12 (ENSBTAG00000007108) #13	PLAAT5 (ENSBTAG00000032730) #14	ENSBTAG00000003236 #16	SLC22A9 (ENSBTAG00000039463) #17	ENSBTAG00000000518 ##18	ENSBTAG00000054320	SLC22A10 (ENSBTAG00000014584) #18	ENSBTAG00000038655 #19	ENSBTAG00000037570 #20	ENSBTAG00000050277 ##18	SLC22A8 (ENSBTAG00000013644) #22	SLC22A6 (ENSBTAG00000013642) #23	ENSBTAG00000047110 #24	CHRM1 (ENSBTAG00000011579) #25	ENSBTAG00000050000	SLC3A2 (ENSBTAG00000013240) #26	WDR74 (ENSBTAG00000009491) #27	ENSBTAG00000048482	STX5 (ENSBTAG00000009490) #28	NXF1 (ENSBTAG00000009488) #29	TMEM223 (ENSBTAG00000009487) #30	TMEM179B (ENSBTAG00000009486) #31	TAF6L (ENSBTAG00000009484) #32	POLR2G (ENSBTAG00000009483) #33	ZBTB3 (ENSBTAG00000021329) #34	TTC9C (ENSBTAG00000000773) #36
Bos_a	ANCESTRAL SPECIES	85															ENSGT00940000163667.a.c.a.b.b.a ##18	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b.b #23	ENSGT00940000157004.a.b.a #24	ENSGT00940000162301 #25	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C #28	ENSGT00390000007539.i.a #29	ENSGT00390000012589 #30	ENSGT00510000048151 #31	ENSGT00640000091486.a #32	ENSGT00390000008975 #33	ENSGT00940000161486 #34	ENSGT00940000161805.p.b #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Wild yak	MODERN SPECIES	1714												ENSBMUG00000023806 #20	ENSBMUG00000023781 #20	ENSBMUG00000023761	ENSBMUG00000023753 ##18	SLC22A8 (ENSBMUG00000023746) #22	SLC22A6 (ENSBMUG00000023728) #23	ENSBMUG00000023697 #24	CHRM1 (ENSBMUG00000023670) #25	SLC3A2 (ENSBMUG00000023664) #26	WDR74 (ENSBMUG00000023565) #27	STX5 (ENSBMUG00000023529) #28	NXF1 (ENSBMUG00000023515) #29	TMEM223 (ENSBMUG00000023496) #30	TMEM179B (ENSBMUG00000023489) #31	TAF6L (ENSBMUG00000023469) #32	POLR2G (ENSBMUG00000023457) #33	ZBTB3 (ENSBMUG00000023437) #34	TTC9C (ENSBMUG00000023431) #36	HNRNPUL2 (ENSBMUG00000023420) #37	GNG3 (ENSBMUG00000023415)
American bison	MODERN SPECIES	3248		ENSBBBG00000020133	ENSBBBG00000020097	ENSBBBG00000020093 ##11	ENSBBBG00000007440 ##11	LGALS12 (ENSBBBG00000005432) #13	PLAAT5 (ENSBBBG00000005425) #14	ENSBBBG00000005424 #16	ENSBBBG00000020020 #17	ENSBBBG00000020008	ENSBBBG00000005407 #18	ENSBBBG00000005111 #19	ENSBBBG00000019974 ##18	ENSBBBG00000019971 ##18	ENSBBBG00000019967 ##18	SLC22A8 (ENSBBBG00000005123) #22	SLC22A6 (ENSBBBG00000019919) #23	ENSBBBG00000019891 #24	CHRM1 (ENSBBBG00000005365) #25	SLC3A2 (ENSBBBG00000019812) #26	WDR74 (ENSBBBG00000005172) #27	STX5 (ENSBBBG00000005199) #28	NXF1 (ENSBBBG00000019622) #29	TMEM223 (ENSBBBG00000019568) #30	TMEM179B (ENSBBBG00000019563) #31	TAF6L (ENSBBBG00000005295) #32	POLR2G (ENSBBBG00000008173) #33	ZBTB3 (ENSBBBG00000019531) #34	TTC9C (ENSBBBG00000005281) #36	HNRNPUL2 (ENSBBBG00000019515) #37	GNG3 (ENSBBBG00000019496)
Siberian musk deer	MODERN SPECIES	1224	SPINDOC (ENSMMSG00000008448) #7	ENSMMSG00000008470	ZFTA (ENSMMSG00000008490) #8	RTN3 (ENSMMSG00000008565) #9	ATL3 (ENSMMSG00000008889) #10	PLAAT3 (ENSMMSG00000008953) #11	LGALS12 (ENSMMSG00000009042) #13	PLAAT5 (ENSMMSG00000009542) #14	ENSMMSG00000009592 #15	ENSMMSG00000009715 #16	ENSMMSG00000011665 #17	ENSMMSG00000011721 #18	ENSMMSG00000011784 #19	ENSMMSG00000011868 ##18	ENSMMSG00000011879 ##18	SLC22A8 (ENSMMSG00000011893) #22	SLC22A6 (ENSMMSG00000012011) #23	CHRM1 (ENSMMSG00000012096) #25	SLC3A2 (ENSMMSG00000012111) #26	WDR74 (ENSMMSG00000012237) #27	STX5 (ENSMMSG00000012364) #28	ENSMMSG00000012430 #29	TMEM223 (ENSMMSG00000012527) #30	TMEM179B (ENSMMSG00000012548) #31	TAF6L (ENSMMSG00000012575) #32	ENSMMSG00000012609 #33	ZBTB3 (ENSMMSG00000012634) #34	TTC9C (ENSMMSG00000012643) #36	HNRNPUL2 (ENSMMSG00000012673) #37	BSCL2 (ENSMMSG00000012721)	ENSMMSG00000012801