Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000161450	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000161450	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Kangaroo rat	MODERN SPECIES	436																Slc22a8 (ENSDORG00000014299) #22	Slc22a6 (ENSDORG00000008272) #23	Chrm1 (ENSDORG00000014333) #24	ENSDORG00000010523 #25	ENSDORG00000023609 #26	Wdr74 (ENSDORG00000030180) #27	ENSDORG00000026362 #28	ENSDORG00000025630 #29	Nxf1 (ENSDORG00000015692) #30	Tmem223 (ENSDORG00000015693) #31	ENSDORG00000029410 #32	ENSDORG00000015695 #33	ENSDORG00000015696 #34	Zbtb3 (ENSDORG00000015697) #35	Ttc9c (ENSDORG00000028105) #36	Hnrnpul2 (ENSDORG00000008678) #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000161450	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.c.a.a	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000161450	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646.j #26	ENSGT00940000156646.i #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Golden Hamster	MODERN SPECIES	617	Cox8a (ENSMAUG00000015109)	Naa40 (ENSMAUG00000013206)	Rcor2 (ENSMAUG00000013529)	ENSMAUG00000013126	ENSMAUG00000015638	ENSMAUG00000014179	Spindoc (ENSMAUG00000013145)	Zfta (ENSMAUG00000013334)	ENSMAUG00000013612	Atl3 (ENSMAUG00000014736)	Plaat3 (ENSMAUG00000013633)	Lgals12 (ENSMAUG00000014489)	Plaat5 (ENSMAUG00000013292)	Slc22a19 (ENSMAUG00000013315)	ENSMAUG00000013367	Slc22a8 (ENSMAUG00000013177) #22	Slc22a6 (ENSMAUG00000013676) #23	Chrm1 (ENSMAUG00000013069) #24	ENSMAUG00000013060 #26	ENSMAUG00000013043 #26	Wdr74 (ENSMAUG00000012992) #27	Tex54 (ENSMAUG00000013004)	Stx5a (ENSMAUG00000013701)	Nxf1 (ENSMAUG00000014572) #30	Tmem223 (ENSMAUG00000012961) #31	Tmem179b (ENSMAUG00000012885) #32	Taf6l (ENSMAUG00000015095) #33	Polr2g (ENSMAUG00000013079) #34	Zbtb3 (ENSMAUG00000013055) #35	Ttc9c (ENSMAUG00000013136) #36	Hnrnpul2 (ENSMAUG00000013163) #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Otub1 (ENSCGRG00001012395)	Cox8a (ENSCGRG00001024928)	ENSCGRG00001004057	Rcor2 (ENSCGRG00001008621)	Mark2 (ENSCGRG00001010551)	Spindoc (ENSCGRG00001001090)	Zfta (ENSCGRG00001004358)	Rtn3 (ENSCGRG00001018871)	Atl3 (ENSCGRG00001018013)	Plaat3 (ENSCGRG00001007573)	Lgals12 (ENSCGRG00001010564)	Plaat5 (ENSCGRG00001019087)	Slc22a19 (ENSCGRG00001022436)	ENSCGRG00001021584	ENSCGRG00001003608	Slc22a8 (ENSCGRG00001007311) #22	Slc22a6 (ENSCGRG00001015989) #23	Chrm1 (ENSCGRG00001002011) #24	Slc3a2 (ENSCGRG00001025072) #26	Wdr74 (ENSCGRG00001004246) #27	Tex54 (ENSCGRG00001012530)	Stx5a (ENSCGRG00001018343)	Nxf1 (ENSCGRG00001013721) #30	Tmem223 (ENSCGRG00001023350) #31	Tmem179b (ENSCGRG00001025014) #32	Taf6l (ENSCGRG00001007467) #33	ENSCGRG00001022692 #34	Zbtb3 (ENSCGRG00001006797) #35	Ttc9c (ENSCGRG00001011015) #36	Hnrnpul2 (ENSCGRG00001017076) #37	Gng3 (ENSCGRG00001014012)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Prairie vole	MODERN SPECIES	16	Cox8a (ENSMOCG00000002916)	Naa40 (ENSMOCG00000014326)	Rcor2 (ENSMOCG00000001766)	Mark2 (ENSMOCG00000015697)	Spindoc (ENSMOCG00000016927)	ENSMOCG00000016523	ENSMOCG00000001558	Atl3 (ENSMOCG00000014305)	Plaat3 (ENSMOCG00000016945)	Lgals12 (ENSMOCG00000019635)	Plaat5 (ENSMOCG00000016896)	Slc22a19 (ENSMOCG00000020438)	ENSMOCG00000001921	ENSMOCG00000019218	ENSMOCG00000002914	Slc22a8 (ENSMOCG00000011371) #22	Slc22a6 (ENSMOCG00000021104) #23	Chrm1 (ENSMOCG00000002497) #24	ENSMOCG00000009004 #26	ENSMOCG00000003857 #27	Tex54 (ENSMOCG00000020857)	Stx5a (ENSMOCG00000021699)	Nxf1 (ENSMOCG00000000939) #30	Tmem223 (ENSMOCG00000010044) #31	Tmem179b (ENSMOCG00000012843) #32	Taf6l (ENSMOCG00000019616) #33	Polr2g (ENSMOCG00000010638) #34	Zbtb3 (ENSMOCG00000002963) #35	Ttc9c (ENSMOCG00000019481) #36	Hnrnpul2 (ENSMOCG00000020000) #37	Gng3 (ENSMOCG00000020628)
Northern American deer mouse	MODERN SPECIES		Rcor2 (ENSPEMG00000018762)	Mark2 (ENSPEMG00000004482)	Spindoc (ENSPEMG00000005634)	Zfta (ENSPEMG00000015536)	ENSPEMG00000006921	Atl3 (ENSPEMG00000017714)	Plaat3 (ENSPEMG00000015751)	Lgals12 (ENSPEMG00000002696)	Plaat5 (ENSPEMG00000007949)	ENSPEMG00000030267	Slc22a19 (ENSPEMG00000011237)	ENSPEMG00000025385	ENSPEMG00000017469	ENSPEMG00000025227	ENSPEMG00000008490	Slc22a8 (ENSPEMG00000005685) #22	Slc22a6 (ENSPEMG00000010064) #23	ENSPEMG00000024846	Chrm1 (ENSPEMG00000027279) #24	Slc3a2 (ENSPEMG00000017251) #26	Wdr74 (ENSPEMG00000008678) #27	Tex54 (ENSPEMG00000012036)	Stx5a (ENSPEMG00000017791)	Nxf1 (ENSPEMG00000006139) #30	Tmem223 (ENSPEMG00000017084) #31	Tmem179b (ENSPEMG00000011859) #32	Taf6l (ENSPEMG00000011799) #33	Polr2g (ENSPEMG00000000685) #34	Zbtb3 (ENSPEMG00000018613) #35	Ttc9c (ENSPEMG00000026108) #36	Hnrnpul2 (ENSPEMG00000015546) #37
Murinae	ANCESTRAL SPECIES		ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Mus	ANCESTRAL SPECIES		ENSGT00940000161450	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000159375	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.c.a.a	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Mouse	MODERN SPECIES	10	Rcor2 (ENSMUSG00000024968)	Mark2 (ENSMUSG00000024969)	Spindoc (ENSMUSG00000024970)	Zfta (ENSMUSG00000053080)	Rtn3 (ENSMUSG00000024758)	Atl3 (ENSMUSG00000024759)	Plaat3 (ENSMUSG00000060675)	Lgals12 (ENSMUSG00000024972)	Plaat5 (ENSMUSG00000024973)	Slc22a19 (ENSMUSG00000024757)	Slc22a26 (ENSMUSG00000053303)	Slc22a27 (ENSMUSG00000067656)	Slc22a28 (ENSMUSG00000063590)	Slc22a29 (ENSMUSG00000075044)	Slc22a30 (ENSMUSG00000052562)	Slc22a8 (ENSMUSG00000063796) #22	Slc22a6 (ENSMUSG00000024650) #23	Chrm1 (ENSMUSG00000032773) #24	Slc3a2 (ENSMUSG00000010095) #26	Wdr74 (ENSMUSG00000042729) #27	Tex54 (ENSMUSG00000090840)	Stx5a (ENSMUSG00000010110)	Nxf1 (ENSMUSG00000010097) #30	Tmem223 (ENSMUSG00000117924) #31	Tmem179b (ENSMUSG00000118346) #32	Taf6l (ENSMUSG00000003680) #33	Polr2g (ENSMUSG00000071662) #34	Zbtb3 (ENSMUSG00000071661) #35	Ttc9c (ENSMUSG00000071660) #36	Hnrnpul2 (ENSMUSG00000071659) #37	Gng3 (ENSMUSG00000071658)
Mus_C	ANCESTRAL SPECIES	25	ENSGT00390000006979.a	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000161239.c.b	ENSGT00940000161239.c.a.a	ENSGT00940000161239.d	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
spretus	MODERN SPECIES	10	Flrt1 (MGP_SPRETEiJ_G0023541)	Otub1 (MGP_SPRETEiJ_G0023542)	Cox8a (MGP_SPRETEiJ_G0023543)	Naa40 (MGP_SPRETEiJ_G0023544)	Rcor2 (MGP_SPRETEiJ_G0023545)	Mark2 (MGP_SPRETEiJ_G0023546)	Spindoc (MGP_SPRETEiJ_G0023547)	Zfta (MGP_SPRETEiJ_G0023548)	Rtn3 (MGP_SPRETEiJ_G0023549)	Atl3 (MGP_SPRETEiJ_G0023550)	Plaat3 (MGP_SPRETEiJ_G0023551)	Lgals12 (MGP_SPRETEiJ_G0023552)	MGP_SPRETEiJ_G0023553	Slc22a19 (MGP_SPRETEiJ_G0023554)	MGP_SPRETEiJ_G0023555	Slc22a8 (MGP_SPRETEiJ_G0023557) #22	Slc22a6 (MGP_SPRETEiJ_G0023558) #23	Chrm1 (MGP_SPRETEiJ_G0023559) #24	Slc3a2 (MGP_SPRETEiJ_G0023560) #26	Wdr74 (MGP_SPRETEiJ_G0023561) #27	Tex54 (MGP_SPRETEiJ_G0023562)	Stx5a (MGP_SPRETEiJ_G0023563)	Taf6l (MGP_SPRETEiJ_G0023565) #33	Polr2g (MGP_SPRETEiJ_G0023566) #34	Zbtb3 (MGP_SPRETEiJ_G0023567) #35	Ttc9c (MGP_SPRETEiJ_G0023568) #36	Hnrnpul2 (MGP_SPRETEiJ_G0023569) #37	Gng3 (MGP_SPRETEiJ_G0023570)	Bscl2 (MGP_SPRETEiJ_G0023571)	Lrrn4cl (MGP_SPRETEiJ_G0023572)	Ubxn1 (MGP_SPRETEiJ_G0023573)
Steppe mouse	MODERN SPECIES	2426															ENSMSIG00000031185	Slc22a8 (ENSMSIG00000031186) #22	Slc22a6 (ENSMSIG00000031188) #23	Chrm1 (ENSMSIG00000031191) #24	Slc3a2 (ENSMSIG00000031194) #26	Wdr74 (ENSMSIG00000031207) #27	Tex54 (ENSMSIG00000031210)	ENSMSIG00000031211	Nxf1 (ENSMSIG00000031212) #30	Tmem223 (ENSMSIG00000031214) #31	Tmem179b (ENSMSIG00000031215) #32	Taf6l (ENSMSIG00000031216) #33	Polr2g (ENSMSIG00000031217) #34	Zbtb3 (ENSMSIG00000031218) #35	Ttc9c (ENSMSIG00000031219) #36	Hnrnpul2 (ENSMSIG00000031220) #37	Gng3 (ENSMSIG00000031221)
Ryukyu mouse	MODERN SPECIES	10	Stip1 (MGP_CAROLIEiJ_G0022629)	Macrod1 (MGP_CAROLIEiJ_G0022630)	Flrt1 (MGP_CAROLIEiJ_G0022631)	MGP_CAROLIEiJ_G0022632	Cox8a (MGP_CAROLIEiJ_G0022633)	Naa40 (MGP_CAROLIEiJ_G0022634)	Rcor2 (MGP_CAROLIEiJ_G0022635)	Mark2 (MGP_CAROLIEiJ_G0022636)	Spindoc (MGP_CAROLIEiJ_G0022637)	Zfta (MGP_CAROLIEiJ_G0022638)	Rtn3 (MGP_CAROLIEiJ_G0022639)	Atl3 (MGP_CAROLIEiJ_G0022640)	Plaat3 (MGP_CAROLIEiJ_G0022641)	Lgals12 (MGP_CAROLIEiJ_G0022642)	MGP_CAROLIEiJ_G0022643	Slc22a8 (MGP_CAROLIEiJ_G0022644) #22	Slc22a6 (MGP_CAROLIEiJ_G0022645) #23	Chrm1 (MGP_CAROLIEiJ_G0022646) #24	Slc3a2 (MGP_CAROLIEiJ_G0022647) #26	Wdr74 (MGP_CAROLIEiJ_G0022648) #27	Tex54 (MGP_CAROLIEiJ_G0022649)	Stx5a (MGP_CAROLIEiJ_G0022650)	Nxf1 (MGP_CAROLIEiJ_G0022651) #30	Tmem179b (MGP_CAROLIEiJ_G0022652) #32	Polr2g (MGP_CAROLIEiJ_G0022653) #34	Zbtb3 (MGP_CAROLIEiJ_G0022654) #35	Ttc9c (MGP_CAROLIEiJ_G0022655) #36	Hnrnpul2 (MGP_CAROLIEiJ_G0022656) #37	Gng3 (MGP_CAROLIEiJ_G0022657)	Bscl2 (MGP_CAROLIEiJ_G0022658)	Lrrn4cl (MGP_CAROLIEiJ_G0022659)
Shrew mouse	MODERN SPECIES		Macrod1 (MGP_PahariEiJ_G0014124)	Flrt1 (MGP_PahariEiJ_G0014125)	Otub1 (MGP_PahariEiJ_G0014126)	Cox8a (MGP_PahariEiJ_G0014127)	Naa40 (MGP_PahariEiJ_G0014128)	Rcor2 (MGP_PahariEiJ_G0014129)	Mark2 (MGP_PahariEiJ_G0014130)	Spindoc (MGP_PahariEiJ_G0014131)	Zfta (MGP_PahariEiJ_G0014132)	Rtn3 (MGP_PahariEiJ_G0014133)	Atl3 (MGP_PahariEiJ_G0014134)	Plaat3 (MGP_PahariEiJ_G0014135)	Lgals12 (MGP_PahariEiJ_G0014136)	MGP_PahariEiJ_G0014137	MGP_PahariEiJ_G0014138	Slc22a8 (MGP_PahariEiJ_G0014139) #22	Slc22a6 (MGP_PahariEiJ_G0014140) #23	Chrm1 (MGP_PahariEiJ_G0014141) #24	Slc3a2 (MGP_PahariEiJ_G0014142) #26	Wdr74 (MGP_PahariEiJ_G0014143) #27	Tex54 (MGP_PahariEiJ_G0014144)	MGP_PahariEiJ_G0014145	Nxf1 (MGP_PahariEiJ_G0014146) #30	Taf6l (MGP_PahariEiJ_G0014147) #33	Polr2g (MGP_PahariEiJ_G0014148) #34	Zbtb3 (MGP_PahariEiJ_G0014149) #35	Ttc9c (MGP_PahariEiJ_G0014150) #36	Hnrnpul2 (MGP_PahariEiJ_G0014151) #37	Gng3 (MGP_PahariEiJ_G0014152)	Bscl2 (MGP_PahariEiJ_G0014153)	Lrrn4cl (MGP_PahariEiJ_G0014154)
Rat	MODERN SPECIES		Rcor2 (ENSRNOG00000060849)	Mark2 (ENSRNOG00000021184)	Spindoc (ENSRNOG00000025061)	Zfta (ENSRNOG00000032042)	Rtn3 (ENSRNOG00000021202)	Atl3 (ENSRNOG00000021203)	ENSRNOG00000066743	Plaat3 (ENSRNOG00000021206)	Lgals12 (ENSRNOG00000021207)	Plaat5 (ENSRNOG00000023528)	Slc22a24 (ENSRNOG00000056396)	Dnajb6-ps10 (ENSRNOG00000017884)	UST4r (ENSRNOG00000049826)	Ust5r (ENSRNOG00000061890)	Slc22a25 (ENSRNOG00000017964)	Slc22a8 (ENSRNOG00000018086) #22	Slc22a6 (ENSRNOG00000018215) #23	Chrm1 (ENSRNOG00000018385) #24	Slc3a2 (ENSRNOG00000018487) #26	LOC690251 (ENSRNOG00000029315)	Wdr74 (ENSRNOG00000042878) #27	LOC120099984 (ENSRNOG00000063481)	Stx5 (ENSRNOG00000018847)	Nxf1 (ENSRNOG00000019069) #30	Tmem223 (ENSRNOG00000019266) #31	Tmem179b (ENSRNOG00000019341) #32	Taf6l (ENSRNOG00000019419) #33	Zbtb3 (ENSRNOG00000019461) #35	Polr2g (ENSRNOG00000019439) #34	Ttc9c (ENSRNOG00000019464) #36	Hnrnpul2 (ENSRNOG00000019507)
Upper Galilee mountains blind mole rat	MODERN SPECIES	993															ENSNGAG00000006190	Slc22a8 (ENSNGAG00000017037) #22	Slc22a6 (ENSNGAG00000017578) #23	Chrm1 (ENSNGAG00000002773) #24	ENSNGAG00000014580 #26	Wdr74 (ENSNGAG00000018778) #27	ENSNGAG00000017211	ENSNGAG00000011098	Nxf1 (ENSNGAG00000001539) #30	Tmem223 (ENSNGAG00000013203) #31	Tmem179b (ENSNGAG00000019915) #32	Taf6l (ENSNGAG00000020944) #33	Polr2g (ENSNGAG00000020624) #34	Zbtb3 (ENSNGAG00000004122) #35	Ttc9c (ENSNGAG00000010773) #36	Hnrnpul2 (ENSNGAG00000012005) #37	Gng3 (ENSNGAG00000017324)
Lesser Egyptian jerboa	MODERN SPECIES	60	Macrod1 (ENSJJAG00000010697)	Otub1 (ENSJJAG00000017403)	Cox8a (ENSJJAG00000022271)	Naa40 (ENSJJAG00000010926)	Rcor2 (ENSJJAG00000000799)	Mark2 (ENSJJAG00000018612)	Spindoc (ENSJJAG00000014147)	Zfta (ENSJJAG00000019968)	ENSJJAG00000016262	ENSJJAG00000006253	ENSJJAG00000017667	Plaat3 (ENSJJAG00000021915)	Lgals12 (ENSJJAG00000014881)	Plaat5 (ENSJJAG00000020253)	ENSJJAG00000010614	Slc22a8 (ENSJJAG00000023072) #22	Slc22a6 (ENSJJAG00000009093) #23	Chrm1 (ENSJJAG00000013856) #24	ENSJJAG00000001125 #26	Wdr74 (ENSJJAG00000001449) #27	Stx5a (ENSJJAG00000023191)	Nxf1 (ENSJJAG00000017480) #30	Tmem223 (ENSJJAG00000020948) #31	Tmem179b (ENSJJAG00000010561) #32	Taf6l (ENSJJAG00000017255) #33	ENSJJAG00000009540	Polr2g (ENSJJAG00000005019) #34	Zbtb3 (ENSJJAG00000024243) #35	ENSJJAG00000008957 #36	Hnrnpul2 (ENSJJAG00000011206) #37	Gng3 (ENSJJAG00000015400)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000006255.b.b	ENSGT00390000014903	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000154853.c	ENSGT00940000162878	ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000164763	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Sciuridae	ANCESTRAL SPECIES	40												ENSGT00940000161499	ENSGT00940000162436	ENSGT00940000164763	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000154196.a	ENSGT00940000155031	ENSGT00410000025985	ENSGT00600000084617	ENSGT00940000157482.d	ENSGT00940000158566	ENSGT00940000154853.d	ENSGT00940000154853.c.d.b.b	ENSGT00940000154853.c.c.a	ENSGT00940000162878	ENSGT00940000154853.c.d.b.a.a	ENSGT00940000162436	ENSGT00940000164763.e	ENSGT00940000164763.f	ENSGT00940000161239	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT01080000257483	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37
Marmotini_b	ANCESTRAL SPECIES	21																ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT00700000106100	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B
Squirrel	MODERN SPECIES	181																SLC22A8 (ENSSTOG00000007893) #22	SLC22A6 (ENSSTOG00000007863) #23	CHRM1 (ENSSTOG00000004514) #24	ENSSTOG00000004495 #26	WDR74 (ENSSTOG00000028814) #27	ENSSTOG00000031064	STX5 (ENSSTOG00000004487)	NXF1 (ENSSTOG00000004463) #30	TMEM179B (ENSSTOG00000004436) #32	TMEM223 (ENSSTOG00000004451) #31	TAF6L (ENSSTOG00000004406) #33	POLR2G (ENSSTOG00000004391) #34	ZBTB3 (ENSSTOG00000027839) #35	TTC9C (ENSSTOG00000004352) #36	HNRNPUL2 (ENSSTOG00000004327) #37	GNG3 (ENSSTOG00000001052)
Arctic ground squirrel	MODERN SPECIES	366																SLC22A8 (ENSUPAG00010005520) #22	SLC22A6 (ENSUPAG00010005504) #23	CHRM1 (ENSUPAG00010005493) #24	SLC3A2 (ENSUPAG00010005472) #26	WDR74 (ENSUPAG00010005413) #27	ENSUPAG00010005405	NXF1 (ENSUPAG00010005335) #30	TMEM223 (ENSUPAG00010005332) #31	TMEM179B (ENSUPAG00010005330) #32	TAF6L (ENSUPAG00010005260) #33	ENSUPAG00010005242 #34	ZBTB3 (ENSUPAG00010005239) #35	TTC9C (ENSUPAG00010005227) #36	HNRNPUL2 (ENSUPAG00010005211) #37	GNG3 (ENSUPAG00010005209)	BSCL2 (ENSUPAG00010005172)
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000006663	ENSMMMG00000006652	ENSMMMG00000006645	ENSMMMG00000006639	PLAAT5 (ENSMMMG00000006630)	ENSMMMG00000005778	ENSMMMG00000005768	ENSMMMG00000004981	ENSMMMG00000004930	ENSMMMG00000004924	ENSMMMG00000004907	ENSMMMG00000004851	ENSMMMG00000003825	ENSMMMG00000003776	ENSMMMG00000003769	SLC22A8 (ENSMMMG00000003731) #22	SLC22A6 (ENSMMMG00000003706) #23	ENSMMMG00000003700	CHRM1 (ENSMMMG00000003694) #24	SLC3A2 (ENSMMMG00000003678) #26	WDR74 (ENSMMMG00000003523) #27	STX5 (ENSMMMG00000003474)	NXF1 (ENSMMMG00000003452) #30	TMEM223 (ENSMMMG00000003447) #31	TMEM179B (ENSMMMG00000003438) #32	TAF6L (ENSMMMG00000003387) #33	POLR2G (ENSMMMG00000003372) #34	ZBTB3 (ENSMMMG00000003369) #35	TTC9C (ENSMMMG00000003362) #36	HNRNPUL2 (ENSMMMG00000002784) #37	GNG3 (ENSMMMG00000002755)
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005022993	ENSSVLG00005023561	ENSSVLG00005023580	ENSSVLG00005023641	ENSSVLG00005023714	ENSSVLG00005023731	ENSSVLG00005023766	ENSSVLG00005023808	ENSSVLG00005023863	ENSSVLG00005024051	ENSSVLG00005024076	ENSSVLG00005024264	SLC22A24 (ENSSVLG00005024838)	ENSSVLG00005024877	ENSSVLG00005024903	SLC22A8 (ENSSVLG00005024944) #22	SLC22A6 (ENSSVLG00005024995) #23	ENSSVLG00005025007	CHRM1 (ENSSVLG00005025022) #24	SLC3A2 (ENSSVLG00005025047) #26	WDR74 (ENSSVLG00005004863) #27	STX5 (ENSSVLG00005004935)	NXF1 (ENSSVLG00005004975) #30	TMEM223 (ENSSVLG00005005000) #31	TMEM179B (ENSSVLG00005005020) #32	TAF6L (ENSSVLG00005005050) #33	POLR2G (ENSSVLG00005005070) #34	ZBTB3 (ENSSVLG00005005114) #35	TTC9C (ENSSVLG00005005141) #36	HNRNPUL2 (ENSSVLG00005005186) #37	BSCL2 (ENSSVLG00005005272)
Hystricomorpha	ANCESTRAL SPECIES	37														ENSGT00940000162436	ENSGT00940000161499	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B	ENSGT00390000011639
Hystricomorpha_a	ANCESTRAL SPECIES	44															ENSGT00940000161499	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B	ENSGT00390000011639
Guinea pig	MODERN SPECIES	44	ENSCPOG00000034332	ENSCPOG00000035995	ENSCPOG00000035220	ENSCPOG00000034087	ENSCPOG00000038081	ENSCPOG00000040732	ENSCPOG00000030540	ENSCPOG00000024812	OR5AS1 (ENSCPOG00000002762)	ENSCPOG00000035549	ENSCPOG00000024576	ENSCPOG00000003501	ENSCPOG00000031316	ENSCPOG00000021873	LGALS12 (ENSCPOG00000001729)	SLC22A8 (ENSCPOG00000007880) #22	SLC22A6 (ENSCPOG00000015195) #23	CHRM1 (ENSCPOG00000000307) #24	SLC3A2 (ENSCPOG00000013152) #26	WDR74 (ENSCPOG00000008305) #27	STX5 (ENSCPOG00000030304)	NXF1 (ENSCPOG00000006126) #30	TMEM223 (ENSCPOG00000006124) #31	TMEM179B (ENSCPOG00000006121) #32	TAF6L (ENSCPOG00000002702) #33	POLR2G (ENSCPOG00000036420) #34	ZBTB3 (ENSCPOG00000011665) #35	TTC9C (ENSCPOG00000031200) #36	ENSCPOG00000000739	GNG3 (ENSCPOG00000040497)	LRRN4CL (ENSCPOG00000036188)
Hystricomorpha_b	ANCESTRAL SPECIES	80															ENSGT00940000161499	ENSGT00940000154901.C.b.e #22	ENSGT00940000157004.a.b #23	ENSGT00940000162301 #24	ENSGT00940000156646 #26	ENSGT00390000015119 #27	ENSGT01000000214440.C	ENSGT00390000007539.i.a #30	ENSGT00390000012589 #31	ENSGT00510000048151 #32	ENSGT00640000091486.a #33	ENSGT00390000008975 #34	ENSGT00940000161486 #35	ENSGT00940000161805 #36	ENSGT00940000160376 #37	ENSGT01100000263497.B	ENSGT00390000011639
Long-tailed chinchilla	MODERN SPECIES	306															LGALS12 (ENSCLAG00000000294)	SLC22A8 (ENSCLAG00000000390) #22	SLC22A6 (ENSCLAG00000001057) #23	CHRM1 (ENSCLAG00000000446) #24	SLC3A2 (ENSCLAG00000000468) #26	WDR74 (ENSCLAG00000000627) #27	STX5 (ENSCLAG00000000665)	NXF1 (ENSCLAG00000001490) #30	TMEM223 (ENSCLAG00000000343) #31	TMEM179B (ENSCLAG00000000362) #32	TAF6L (ENSCLAG00000000112) #33	POLR2G (ENSCLAG00000000802) #34	ZBTB3 (ENSCLAG00000000861) #35	TTC9C (ENSCLAG00000000902) #36	HNRNPUL2 (ENSCLAG00000000417) #37	LRRN4CL (ENSCLAG00000000228)	GNG3 (ENSCLAG00000000268)
Degu	MODERN SPECIES	320													ENSODEG00000002375	ENSODEG00000002413	LGALS12 (ENSODEG00000002489)	SLC22A8 (ENSODEG00000002518) #22	SLC22A6 (ENSODEG00000002780) #23	CHRM1 (ENSODEG00000018978) #24	SLC3A2 (ENSODEG00000003055) #26	WDR74 (ENSODEG00000003132) #27	STX5 (ENSODEG00000003162)	NXF1 (ENSODEG00000001620) #30	TMEM223 (ENSODEG00000001739) #31	TAF6L (ENSODEG00000001781) #33	ENSODEG00000018748	ENSODEG00000002048 #34	HNRNPUL2 (ENSODEG00000002142) #37	TTC9C (ENSODEG00000002308) #36	GNG3 (ENSODEG00000002315)	UBXN1 (ENSODEG00000002987)	UQCC3 (ENSODEG00000003020)
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000011456	SLC39A13 (ENSHGLG00000041087)	PSMC3 (ENSHGLG00000005713)	RAPSN (ENSHGLG00000008521)	ENSHGLG00000006909	ENSHGLG00000037048	KBTBD4 (ENSHGLG00000047234)	NDUFS3 (ENSHGLG00000018368)	FAM180B (ENSHGLG00000038229)	MTCH2 (ENSHGLG00000017536)	ENSHGLG00000043784	ENSHGLG00000008506	ENSHGLG00000039374	ENSHGLG00000041936	ENSHGLG00000003580	ENSHGLG00000003320 #22	SLC22A6 (ENSHGLG00000003133) #23	CHRM1 (ENSHGLG00000040030) #24	SLC3A2 (ENSHGLG00000004557) #26	WDR74 (ENSHGLG00000003751) #27	STX5 (ENSHGLG00000003553)	NXF1 (ENSHGLG00000002936) #30	TMEM223 (ENSHGLG00000034690) #31	TAF6L (ENSHGLG00000005590) #33	POLR2G (ENSHGLG00000004851) #34	ZBTB3 (ENSHGLG00000032180) #35	ENSHGLG00000038212	HNRNPUL2 (ENSHGLG00000003285) #37	GNG3 (ENSHGLG00000038630)	BSCL2 (ENSHGLG00000002887)	ENSHGLG00000038756