Glires ANCESTRAL SPECIES 1 ENSGT00940000161450 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Rodentia ANCESTRAL SPECIES 1 ENSGT00940000161450 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Rodentia_B ANCESTRAL SPECIES 5 ENSGT00940000161450 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Myomorpha ANCESTRAL SPECIES 4 ENSGT00940000161450 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Muroidea ANCESTRAL SPECIES 2 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Muroidea_A ANCESTRAL SPECIES ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.c.a.a ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Murinae ANCESTRAL SPECIES ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Mus ANCESTRAL SPECIES ENSGT00940000161450 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Mus_A ANCESTRAL SPECIES 16 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Mus_B ANCESTRAL SPECIES 16 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.c.a.a ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Mus_C ANCESTRAL SPECIES 25 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.c.a.a ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Steppe mouse MODERN SPECIES 2426 ENSMSIG00000031185 #21 Slc22a8 (ENSMSIG00000031186) #22 Slc22a6 (ENSMSIG00000031188) #23 Chrm1 (ENSMSIG00000031191) #24 Slc3a2 (ENSMSIG00000031194) #25 Wdr74 (ENSMSIG00000031207) #26 Tex54 (ENSMSIG00000031210) #27 ENSMSIG00000031211 #28 Nxf1 (ENSMSIG00000031212) #29 Tmem223 (ENSMSIG00000031214) #30 Tmem179b (ENSMSIG00000031215) #31 Taf6l (ENSMSIG00000031216) #32 Polr2g (ENSMSIG00000031217) #33 Zbtb3 (ENSMSIG00000031218) #34 Ttc9c (ENSMSIG00000031219) #35 Hnrnpul2 (ENSMSIG00000031220) #36 Gng3 (ENSMSIG00000031221) #37 spretus MODERN SPECIES 10 Flrt1 (MGP_SPRETEiJ_G0023541) Otub1 (MGP_SPRETEiJ_G0023542) Cox8a (MGP_SPRETEiJ_G0023543) Naa40 (MGP_SPRETEiJ_G0023544) Rcor2 (MGP_SPRETEiJ_G0023545) Mark2 (MGP_SPRETEiJ_G0023546) Spindoc (MGP_SPRETEiJ_G0023547) Zfta (MGP_SPRETEiJ_G0023548) Rtn3 (MGP_SPRETEiJ_G0023549) Atl3 (MGP_SPRETEiJ_G0023550) Plaat3 (MGP_SPRETEiJ_G0023551) Lgals12 (MGP_SPRETEiJ_G0023552) MGP_SPRETEiJ_G0023553 Slc22a19 (MGP_SPRETEiJ_G0023554) ##21 MGP_SPRETEiJ_G0023555 ##21 Slc22a8 (MGP_SPRETEiJ_G0023557) #22 Slc22a6 (MGP_SPRETEiJ_G0023558) #23 Chrm1 (MGP_SPRETEiJ_G0023559) #24 Slc3a2 (MGP_SPRETEiJ_G0023560) #25 Wdr74 (MGP_SPRETEiJ_G0023561) #26 Tex54 (MGP_SPRETEiJ_G0023562) #27 Stx5a (MGP_SPRETEiJ_G0023563) #28 Taf6l (MGP_SPRETEiJ_G0023565) #32 Polr2g (MGP_SPRETEiJ_G0023566) #33 Zbtb3 (MGP_SPRETEiJ_G0023567) #34 Ttc9c (MGP_SPRETEiJ_G0023568) #35 Hnrnpul2 (MGP_SPRETEiJ_G0023569) #36 Gng3 (MGP_SPRETEiJ_G0023570) #37 Bscl2 (MGP_SPRETEiJ_G0023571) Lrrn4cl (MGP_SPRETEiJ_G0023572) Ubxn1 (MGP_SPRETEiJ_G0023573) Mouse MODERN SPECIES 10 Rcor2 (ENSMUSG00000024968) Mark2 (ENSMUSG00000024969) Spindoc (ENSMUSG00000024970) Zfta (ENSMUSG00000053080) Rtn3 (ENSMUSG00000024758) Atl3 (ENSMUSG00000024759) Plaat3 (ENSMUSG00000060675) Lgals12 (ENSMUSG00000024972) Plaat5 (ENSMUSG00000024973) Slc22a19 (ENSMUSG00000024757) ##21 Slc22a26 (ENSMUSG00000053303) ##21 Slc22a27 (ENSMUSG00000067656) ##21 Slc22a28 (ENSMUSG00000063590) ##21 Slc22a29 (ENSMUSG00000075044) ##21 Slc22a30 (ENSMUSG00000052562) ##21 Slc22a8 (ENSMUSG00000063796) #22 Slc22a6 (ENSMUSG00000024650) #23 Chrm1 (ENSMUSG00000032773) #24 Slc3a2 (ENSMUSG00000010095) #25 Wdr74 (ENSMUSG00000042729) #26 Tex54 (ENSMUSG00000090840) #27 Stx5a (ENSMUSG00000010110) #28 Nxf1 (ENSMUSG00000010097) #29 Tmem223 (ENSMUSG00000117924) #30 Tmem179b (ENSMUSG00000118346) #31 Taf6l (ENSMUSG00000003680) #32 Polr2g (ENSMUSG00000071662) #33 Zbtb3 (ENSMUSG00000071661) #34 Ttc9c (ENSMUSG00000071660) #35 Hnrnpul2 (ENSMUSG00000071659) #36 Gng3 (ENSMUSG00000071658) #37 Ryukyu mouse MODERN SPECIES 10 Stip1 (MGP_CAROLIEiJ_G0022629) Macrod1 (MGP_CAROLIEiJ_G0022630) Flrt1 (MGP_CAROLIEiJ_G0022631) MGP_CAROLIEiJ_G0022632 Cox8a (MGP_CAROLIEiJ_G0022633) Naa40 (MGP_CAROLIEiJ_G0022634) Rcor2 (MGP_CAROLIEiJ_G0022635) Mark2 (MGP_CAROLIEiJ_G0022636) Spindoc (MGP_CAROLIEiJ_G0022637) Zfta (MGP_CAROLIEiJ_G0022638) Rtn3 (MGP_CAROLIEiJ_G0022639) Atl3 (MGP_CAROLIEiJ_G0022640) Plaat3 (MGP_CAROLIEiJ_G0022641) Lgals12 (MGP_CAROLIEiJ_G0022642) MGP_CAROLIEiJ_G0022643 Slc22a8 (MGP_CAROLIEiJ_G0022644) #22 Slc22a6 (MGP_CAROLIEiJ_G0022645) #23 Chrm1 (MGP_CAROLIEiJ_G0022646) #24 Slc3a2 (MGP_CAROLIEiJ_G0022647) #25 Wdr74 (MGP_CAROLIEiJ_G0022648) #26 Tex54 (MGP_CAROLIEiJ_G0022649) #27 Stx5a (MGP_CAROLIEiJ_G0022650) #28 Nxf1 (MGP_CAROLIEiJ_G0022651) #29 Tmem179b (MGP_CAROLIEiJ_G0022652) #31 Polr2g (MGP_CAROLIEiJ_G0022653) #33 Zbtb3 (MGP_CAROLIEiJ_G0022654) #34 Ttc9c (MGP_CAROLIEiJ_G0022655) #35 Hnrnpul2 (MGP_CAROLIEiJ_G0022656) #36 Gng3 (MGP_CAROLIEiJ_G0022657) #37 Bscl2 (MGP_CAROLIEiJ_G0022658) Lrrn4cl (MGP_CAROLIEiJ_G0022659) Shrew mouse MODERN SPECIES Macrod1 (MGP_PahariEiJ_G0014124) Flrt1 (MGP_PahariEiJ_G0014125) Otub1 (MGP_PahariEiJ_G0014126) Cox8a (MGP_PahariEiJ_G0014127) Naa40 (MGP_PahariEiJ_G0014128) Rcor2 (MGP_PahariEiJ_G0014129) Mark2 (MGP_PahariEiJ_G0014130) Spindoc (MGP_PahariEiJ_G0014131) Zfta (MGP_PahariEiJ_G0014132) Rtn3 (MGP_PahariEiJ_G0014133) Atl3 (MGP_PahariEiJ_G0014134) Plaat3 (MGP_PahariEiJ_G0014135) Lgals12 (MGP_PahariEiJ_G0014136) MGP_PahariEiJ_G0014137 MGP_PahariEiJ_G0014138 #21 Slc22a8 (MGP_PahariEiJ_G0014139) #22 Slc22a6 (MGP_PahariEiJ_G0014140) #23 Chrm1 (MGP_PahariEiJ_G0014141) #24 Slc3a2 (MGP_PahariEiJ_G0014142) #25 Wdr74 (MGP_PahariEiJ_G0014143) #26 Tex54 (MGP_PahariEiJ_G0014144) #27 MGP_PahariEiJ_G0014145 #28 Nxf1 (MGP_PahariEiJ_G0014146) #29 Taf6l (MGP_PahariEiJ_G0014147) #32 Polr2g (MGP_PahariEiJ_G0014148) #33 Zbtb3 (MGP_PahariEiJ_G0014149) #34 Ttc9c (MGP_PahariEiJ_G0014150) #35 Hnrnpul2 (MGP_PahariEiJ_G0014151) #36 Gng3 (MGP_PahariEiJ_G0014152) #37 Bscl2 (MGP_PahariEiJ_G0014153) Lrrn4cl (MGP_PahariEiJ_G0014154) Rat MODERN SPECIES Rcor2 (ENSRNOG00000060849) Mark2 (ENSRNOG00000021184) Spindoc (ENSRNOG00000025061) Zfta (ENSRNOG00000032042) Rtn3 (ENSRNOG00000021202) Atl3 (ENSRNOG00000021203) ENSRNOG00000066743 Plaat3 (ENSRNOG00000021206) Lgals12 (ENSRNOG00000021207) Plaat5 (ENSRNOG00000023528) Slc22a24 (ENSRNOG00000056396) ##21 Dnajb6-ps10 (ENSRNOG00000017884) UST4r (ENSRNOG00000049826) ##21 Ust5r (ENSRNOG00000061890) ##21 Slc22a25 (ENSRNOG00000017964) #21 Slc22a8 (ENSRNOG00000018086) #22 Slc22a6 (ENSRNOG00000018215) #23 Chrm1 (ENSRNOG00000018385) #24 Slc3a2 (ENSRNOG00000018487) #25 LOC690251 (ENSRNOG00000029315) Wdr74 (ENSRNOG00000042878) #26 LOC120099984 (ENSRNOG00000063481) #27 Stx5 (ENSRNOG00000018847) #28 Nxf1 (ENSRNOG00000019069) #29 Tmem223 (ENSRNOG00000019266) #30 Tmem179b (ENSRNOG00000019341) #31 Taf6l (ENSRNOG00000019419) #32 Zbtb3 (ENSRNOG00000019461) #34 Polr2g (ENSRNOG00000019439) #33 Ttc9c (ENSRNOG00000019464) #35 Hnrnpul2 (ENSRNOG00000019507) Cricetidae ANCESTRAL SPECIES 1 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Cricetinae ANCESTRAL SPECIES 2 ENSGT00940000161450 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646.j #25 ENSGT00940000156646.i #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Golden Hamster MODERN SPECIES 617 Cox8a (ENSMAUG00000015109) Naa40 (ENSMAUG00000013206) Rcor2 (ENSMAUG00000013529) ENSMAUG00000013126 ENSMAUG00000015638 ENSMAUG00000014179 Spindoc (ENSMAUG00000013145) Zfta (ENSMAUG00000013334) ENSMAUG00000013612 Atl3 (ENSMAUG00000014736) Plaat3 (ENSMAUG00000013633) Lgals12 (ENSMAUG00000014489) Plaat5 (ENSMAUG00000013292) Slc22a19 (ENSMAUG00000013315) ##21 ENSMAUG00000013367 #21 Slc22a8 (ENSMAUG00000013177) #22 Slc22a6 (ENSMAUG00000013676) #23 Chrm1 (ENSMAUG00000013069) #24 ENSMAUG00000013060 #25 ENSMAUG00000013043 #25 Wdr74 (ENSMAUG00000012992) #26 Tex54 (ENSMAUG00000013004) #27 Stx5a (ENSMAUG00000013701) #28 Nxf1 (ENSMAUG00000014572) #29 Tmem223 (ENSMAUG00000012961) #30 Tmem179b (ENSMAUG00000012885) #31 Taf6l (ENSMAUG00000015095) #32 Polr2g (ENSMAUG00000013079) #33 Zbtb3 (ENSMAUG00000013055) #34 Ttc9c (ENSMAUG00000013136) #35 Hnrnpul2 (ENSMAUG00000013163) #36 Chinese hamster chok1gshd MODERN SPECIES 401 Otub1 (ENSCGRG00001012395) Cox8a (ENSCGRG00001024928) ENSCGRG00001004057 Rcor2 (ENSCGRG00001008621) Mark2 (ENSCGRG00001010551) Spindoc (ENSCGRG00001001090) Zfta (ENSCGRG00001004358) Rtn3 (ENSCGRG00001018871) Atl3 (ENSCGRG00001018013) Plaat3 (ENSCGRG00001007573) Lgals12 (ENSCGRG00001010564) Plaat5 (ENSCGRG00001019087) Slc22a19 (ENSCGRG00001022436) ##21 ENSCGRG00001021584 ENSCGRG00001003608 #21 Slc22a8 (ENSCGRG00001007311) #22 Slc22a6 (ENSCGRG00001015989) #23 Chrm1 (ENSCGRG00001002011) #24 Slc3a2 (ENSCGRG00001025072) #25 Wdr74 (ENSCGRG00001004246) #26 Tex54 (ENSCGRG00001012530) #27 Stx5a (ENSCGRG00001018343) #28 Nxf1 (ENSCGRG00001013721) #29 Tmem223 (ENSCGRG00001023350) #30 Tmem179b (ENSCGRG00001025014) #31 Taf6l (ENSCGRG00001007467) #32 ENSCGRG00001022692 #33 Zbtb3 (ENSCGRG00001006797) #34 Ttc9c (ENSCGRG00001011015) #35 Hnrnpul2 (ENSCGRG00001017076) #36 Gng3 (ENSCGRG00001014012) #37 Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00940000159375 ENSGT00390000006979.a ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.c.b ##21 ENSGT00940000161239.d #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Prairie vole MODERN SPECIES 16 Cox8a (ENSMOCG00000002916) Naa40 (ENSMOCG00000014326) Rcor2 (ENSMOCG00000001766) Mark2 (ENSMOCG00000015697) Spindoc (ENSMOCG00000016927) ENSMOCG00000016523 ENSMOCG00000001558 Atl3 (ENSMOCG00000014305) Plaat3 (ENSMOCG00000016945) Lgals12 (ENSMOCG00000019635) Plaat5 (ENSMOCG00000016896) Slc22a19 (ENSMOCG00000020438) ##21 ENSMOCG00000001921 ENSMOCG00000019218 #21 ENSMOCG00000002914 #21 Slc22a8 (ENSMOCG00000011371) #22 Slc22a6 (ENSMOCG00000021104) #23 Chrm1 (ENSMOCG00000002497) #24 ENSMOCG00000009004 #25 ENSMOCG00000003857 #26 Tex54 (ENSMOCG00000020857) #27 Stx5a (ENSMOCG00000021699) #28 Nxf1 (ENSMOCG00000000939) #29 Tmem223 (ENSMOCG00000010044) #30 Tmem179b (ENSMOCG00000012843) #31 Taf6l (ENSMOCG00000019616) #32 Polr2g (ENSMOCG00000010638) #33 Zbtb3 (ENSMOCG00000002963) #34 Ttc9c (ENSMOCG00000019481) #35 Hnrnpul2 (ENSMOCG00000020000) #36 Gng3 (ENSMOCG00000020628) #37 Northern American deer mouse MODERN SPECIES Rcor2 (ENSPEMG00000018762) Mark2 (ENSPEMG00000004482) Spindoc (ENSPEMG00000005634) Zfta (ENSPEMG00000015536) ENSPEMG00000006921 Atl3 (ENSPEMG00000017714) Plaat3 (ENSPEMG00000015751) Lgals12 (ENSPEMG00000002696) Plaat5 (ENSPEMG00000007949) ENSPEMG00000030267 ##21 Slc22a19 (ENSPEMG00000011237) ##21 ENSPEMG00000025385 ##21 ENSPEMG00000017469 ##21 ENSPEMG00000025227 ##21 ENSPEMG00000008490 #21 Slc22a8 (ENSPEMG00000005685) #22 Slc22a6 (ENSPEMG00000010064) #23 ENSPEMG00000024846 Chrm1 (ENSPEMG00000027279) #24 Slc3a2 (ENSPEMG00000017251) #25 Wdr74 (ENSPEMG00000008678) #26 Tex54 (ENSPEMG00000012036) #27 Stx5a (ENSPEMG00000017791) #28 Nxf1 (ENSPEMG00000006139) #29 Tmem223 (ENSPEMG00000017084) #30 Tmem179b (ENSPEMG00000011859) #31 Taf6l (ENSPEMG00000011799) #32 Polr2g (ENSPEMG00000000685) #33 Zbtb3 (ENSPEMG00000018613) #34 Ttc9c (ENSPEMG00000026108) #35 Hnrnpul2 (ENSPEMG00000015546) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 993 ENSNGAG00000006190 ##21 Slc22a8 (ENSNGAG00000017037) #22 Slc22a6 (ENSNGAG00000017578) #23 Chrm1 (ENSNGAG00000002773) #24 ENSNGAG00000014580 #25 Wdr74 (ENSNGAG00000018778) #26 ENSNGAG00000017211 #28 ENSNGAG00000011098 #28 Nxf1 (ENSNGAG00000001539) #29 Tmem223 (ENSNGAG00000013203) #30 Tmem179b (ENSNGAG00000019915) #31 Taf6l (ENSNGAG00000020944) #32 Polr2g (ENSNGAG00000020624) #33 Zbtb3 (ENSNGAG00000004122) #34 Ttc9c (ENSNGAG00000010773) #35 Hnrnpul2 (ENSNGAG00000012005) #36 Gng3 (ENSNGAG00000017324) #37 Lesser Egyptian jerboa MODERN SPECIES 60 Macrod1 (ENSJJAG00000010697) Otub1 (ENSJJAG00000017403) Cox8a (ENSJJAG00000022271) Naa40 (ENSJJAG00000010926) Rcor2 (ENSJJAG00000000799) Mark2 (ENSJJAG00000018612) Spindoc (ENSJJAG00000014147) Zfta (ENSJJAG00000019968) ENSJJAG00000016262 ENSJJAG00000006253 ENSJJAG00000017667 Plaat3 (ENSJJAG00000021915) Lgals12 (ENSJJAG00000014881) Plaat5 (ENSJJAG00000020253) ENSJJAG00000010614 #21 Slc22a8 (ENSJJAG00000023072) #22 Slc22a6 (ENSJJAG00000009093) #23 Chrm1 (ENSJJAG00000013856) #24 ENSJJAG00000001125 #25 Wdr74 (ENSJJAG00000001449) #26 Stx5a (ENSJJAG00000023191) #28 Nxf1 (ENSJJAG00000017480) #29 Tmem223 (ENSJJAG00000020948) #30 Tmem179b (ENSJJAG00000010561) #31 Taf6l (ENSJJAG00000017255) #32 ENSJJAG00000009540 Polr2g (ENSJJAG00000005019) #33 Zbtb3 (ENSJJAG00000024243) #34 ENSJJAG00000008957 #35 Hnrnpul2 (ENSJJAG00000011206) #36 Gng3 (ENSJJAG00000015400) #37 Kangaroo rat MODERN SPECIES 436 Slc22a8 (ENSDORG00000014299) #22 Slc22a6 (ENSDORG00000008272) #23 Chrm1 (ENSDORG00000014333) #24 ENSDORG00000010523 #25 ENSDORG00000023609 #25 Wdr74 (ENSDORG00000030180) #26 ENSDORG00000026362 ENSDORG00000025630 Nxf1 (ENSDORG00000015692) #29 Tmem223 (ENSDORG00000015693) #30 ENSDORG00000029410 #31 ENSDORG00000015695 #32 ENSDORG00000015696 #33 Zbtb3 (ENSDORG00000015697) #34 Ttc9c (ENSDORG00000028105) #35 Hnrnpul2 (ENSDORG00000008678) #36 Rodentia_A ANCESTRAL SPECIES 1 ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000154853.c ENSGT00940000162878 ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000164763 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Sciuridae ANCESTRAL SPECIES 40 ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000164763 ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Marmotini ANCESTRAL SPECIES 6 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00600000084617 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000154853.c.d.b.b ENSGT00940000154853.c.c.a ENSGT00940000162878 ENSGT00940000154853.c.d.b.a.a ENSGT00940000162436 ENSGT00940000164763.e ENSGT00940000164763.f ENSGT00940000161239 #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT01080000257483 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 Marmotini_b ANCESTRAL SPECIES 21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT00700000106100 #27 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 Squirrel MODERN SPECIES 181 SLC22A8 (ENSSTOG00000007893) #22 SLC22A6 (ENSSTOG00000007863) #23 CHRM1 (ENSSTOG00000004514) #24 ENSSTOG00000004495 #25 WDR74 (ENSSTOG00000028814) #26 ENSSTOG00000031064 #27 STX5 (ENSSTOG00000004487) #28 NXF1 (ENSSTOG00000004463) #29 TMEM179B (ENSSTOG00000004436) #31 TMEM223 (ENSSTOG00000004451) #30 TAF6L (ENSSTOG00000004406) #32 POLR2G (ENSSTOG00000004391) #33 ZBTB3 (ENSSTOG00000027839) #34 TTC9C (ENSSTOG00000004352) #35 HNRNPUL2 (ENSSTOG00000004327) #36 GNG3 (ENSSTOG00000001052) #37 Arctic ground squirrel MODERN SPECIES 366 SLC22A8 (ENSUPAG00010005520) #22 SLC22A6 (ENSUPAG00010005504) #23 CHRM1 (ENSUPAG00010005493) #24 SLC3A2 (ENSUPAG00010005472) #25 WDR74 (ENSUPAG00010005413) #26 ENSUPAG00010005405 #27 NXF1 (ENSUPAG00010005335) #29 TMEM223 (ENSUPAG00010005332) #30 TMEM179B (ENSUPAG00010005330) #31 TAF6L (ENSUPAG00010005260) #32 ENSUPAG00010005242 #33 ZBTB3 (ENSUPAG00010005239) #34 TTC9C (ENSUPAG00010005227) #35 HNRNPUL2 (ENSUPAG00010005211) #36 GNG3 (ENSUPAG00010005209) #37 BSCL2 (ENSUPAG00010005172) Alpin marmot MODERN SPECIES 3 ENSMMMG00000006663 ENSMMMG00000006652 ENSMMMG00000006645 ENSMMMG00000006639 PLAAT5 (ENSMMMG00000006630) ENSMMMG00000005778 ENSMMMG00000005768 #21 ENSMMMG00000004981 ENSMMMG00000004930 #21 ENSMMMG00000004924 ENSMMMG00000004907 #21 ENSMMMG00000004851 #21 ENSMMMG00000003825 ENSMMMG00000003776 ENSMMMG00000003769 #21 SLC22A8 (ENSMMMG00000003731) #22 SLC22A6 (ENSMMMG00000003706) #23 ENSMMMG00000003700 CHRM1 (ENSMMMG00000003694) #24 SLC3A2 (ENSMMMG00000003678) #25 WDR74 (ENSMMMG00000003523) #26 STX5 (ENSMMMG00000003474) #28 NXF1 (ENSMMMG00000003452) #29 TMEM223 (ENSMMMG00000003447) #30 TMEM179B (ENSMMMG00000003438) #31 TAF6L (ENSMMMG00000003387) #32 POLR2G (ENSMMMG00000003372) #33 ZBTB3 (ENSMMMG00000003369) #34 TTC9C (ENSMMMG00000003362) #35 HNRNPUL2 (ENSMMMG00000002784) #36 GNG3 (ENSMMMG00000002755) #37 Eurasian red squirrel MODERN SPECIES 2 ENSSVLG00005022993 #21 ENSSVLG00005023561 #21 ENSSVLG00005023580 #21 ENSSVLG00005023641 #21 ENSSVLG00005023714 ENSSVLG00005023731 ENSSVLG00005023766 #21 ENSSVLG00005023808 ENSSVLG00005023863 #21 ENSSVLG00005024051 #21 ENSSVLG00005024076 ENSSVLG00005024264 #21 SLC22A24 (ENSSVLG00005024838) ENSSVLG00005024877 ENSSVLG00005024903 SLC22A8 (ENSSVLG00005024944) #22 SLC22A6 (ENSSVLG00005024995) #23 ENSSVLG00005025007 CHRM1 (ENSSVLG00005025022) #24 SLC3A2 (ENSSVLG00005025047) #25 WDR74 (ENSSVLG00005004863) #26 STX5 (ENSSVLG00005004935) #28 NXF1 (ENSSVLG00005004975) #29 TMEM223 (ENSSVLG00005005000) #30 TMEM179B (ENSSVLG00005005020) #31 TAF6L (ENSSVLG00005005050) #32 POLR2G (ENSSVLG00005005070) #33 ZBTB3 (ENSSVLG00005005114) #34 TTC9C (ENSSVLG00005005141) #35 HNRNPUL2 (ENSSVLG00005005186) #36 BSCL2 (ENSSVLG00005005272) Hystricomorpha ANCESTRAL SPECIES 37 ENSGT00940000162436 ENSGT00940000161499 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 ENSGT00390000011639 Hystricomorpha_a ANCESTRAL SPECIES 44 ENSGT00940000161499 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 ENSGT00390000011639 Guinea pig MODERN SPECIES 44 ENSCPOG00000034332 ENSCPOG00000035995 ENSCPOG00000035220 ENSCPOG00000034087 ENSCPOG00000038081 ENSCPOG00000040732 ENSCPOG00000030540 ENSCPOG00000024812 OR5AS1 (ENSCPOG00000002762) ENSCPOG00000035549 ENSCPOG00000024576 ENSCPOG00000003501 ENSCPOG00000031316 ENSCPOG00000021873 LGALS12 (ENSCPOG00000001729) SLC22A8 (ENSCPOG00000007880) #22 SLC22A6 (ENSCPOG00000015195) #23 CHRM1 (ENSCPOG00000000307) #24 SLC3A2 (ENSCPOG00000013152) #25 WDR74 (ENSCPOG00000008305) #26 STX5 (ENSCPOG00000030304) #28 NXF1 (ENSCPOG00000006126) #29 TMEM223 (ENSCPOG00000006124) #30 TMEM179B (ENSCPOG00000006121) #31 TAF6L (ENSCPOG00000002702) #32 POLR2G (ENSCPOG00000036420) #33 ZBTB3 (ENSCPOG00000011665) #34 TTC9C (ENSCPOG00000031200) #35 ENSCPOG00000000739 GNG3 (ENSCPOG00000040497) #37 LRRN4CL (ENSCPOG00000036188) Hystricomorpha_b ANCESTRAL SPECIES 80 ENSGT00940000161499 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000162301 #24 ENSGT00940000156646 #25 ENSGT00390000015119 #26 ENSGT01000000214440.C #28 ENSGT00390000007539.i.a #29 ENSGT00390000012589 #30 ENSGT00510000048151 #31 ENSGT00640000091486.a #32 ENSGT00390000008975 #33 ENSGT00940000161486 #34 ENSGT00940000161805 #35 ENSGT00940000160376 #36 ENSGT01100000263497.B #37 ENSGT00390000011639 Long-tailed chinchilla MODERN SPECIES 306 LGALS12 (ENSCLAG00000000294) SLC22A8 (ENSCLAG00000000390) #22 SLC22A6 (ENSCLAG00000001057) #23 CHRM1 (ENSCLAG00000000446) #24 SLC3A2 (ENSCLAG00000000468) #25 WDR74 (ENSCLAG00000000627) #26 STX5 (ENSCLAG00000000665) #28 NXF1 (ENSCLAG00000001490) #29 TMEM223 (ENSCLAG00000000343) #30 TMEM179B (ENSCLAG00000000362) #31 TAF6L (ENSCLAG00000000112) #32 POLR2G (ENSCLAG00000000802) #33 ZBTB3 (ENSCLAG00000000861) #34 TTC9C (ENSCLAG00000000902) #35 HNRNPUL2 (ENSCLAG00000000417) #36 LRRN4CL (ENSCLAG00000000228) GNG3 (ENSCLAG00000000268) #37 Degu MODERN SPECIES 320 ENSODEG00000002375 ENSODEG00000002413 LGALS12 (ENSODEG00000002489) SLC22A8 (ENSODEG00000002518) #22 SLC22A6 (ENSODEG00000002780) #23 CHRM1 (ENSODEG00000018978) #24 SLC3A2 (ENSODEG00000003055) #25 WDR74 (ENSODEG00000003132) #26 STX5 (ENSODEG00000003162) #28 NXF1 (ENSODEG00000001620) #29 TMEM223 (ENSODEG00000001739) #30 TAF6L (ENSODEG00000001781) #32 ENSODEG00000018748 ENSODEG00000002048 #33 HNRNPUL2 (ENSODEG00000002142) #36 TTC9C (ENSODEG00000002308) #35 GNG3 (ENSODEG00000002315) #37 UBXN1 (ENSODEG00000002987) UQCC3 (ENSODEG00000003020) Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000011456 SLC39A13 (ENSHGLG00000041087) PSMC3 (ENSHGLG00000005713) RAPSN (ENSHGLG00000008521) ENSHGLG00000006909 ENSHGLG00000037048 KBTBD4 (ENSHGLG00000047234) NDUFS3 (ENSHGLG00000018368) FAM180B (ENSHGLG00000038229) MTCH2 (ENSHGLG00000017536) ENSHGLG00000043784 ENSHGLG00000008506 ENSHGLG00000039374 ENSHGLG00000041936 ENSHGLG00000003580 ENSHGLG00000003320 #22 SLC22A6 (ENSHGLG00000003133) #23 CHRM1 (ENSHGLG00000040030) #24 SLC3A2 (ENSHGLG00000004557) #25 WDR74 (ENSHGLG00000003751) #26 STX5 (ENSHGLG00000003553) #28 NXF1 (ENSHGLG00000002936) #29 TMEM223 (ENSHGLG00000034690) #30 TAF6L (ENSHGLG00000005590) #32 POLR2G (ENSHGLG00000004851) #33 ZBTB3 (ENSHGLG00000032180) #34 ENSHGLG00000038212 HNRNPUL2 (ENSHGLG00000003285) #36 GNG3 (ENSHGLG00000038630) #37 BSCL2 (ENSHGLG00000002887) ENSHGLG00000038756 Lagomorpha ANCESTRAL SPECIES 161 ENSGT00390000006255.b.b ENSGT00390000014903 ENSGT00940000154196.a ENSGT00940000155031 ENSGT00410000025985 ENSGT00940000175551 ENSGT00980000200147 ENSGT00940000157482.d ENSGT00940000158566 ENSGT00940000154853.d ENSGT00940000154853.c ENSGT00940000162660.b.f ENSGT00940000161499 ENSGT00940000162436 ENSGT00940000161239.b #21 ENSGT00940000154901.C.b.e #22 ENSGT00940000157004.a.b #23 ENSGT00940000156646 #25 ENSGT00390000015119 #26 Pika MODERN SPECIES 4431 ENSOPRG00000011712 #22 ENSOPRG00000011693 #23