Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Euteleostomi	ANCESTRAL SPECIES	1103																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Sarcopterygii	ANCESTRAL SPECIES	959																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Tetrapoda	ANCESTRAL SPECIES	452																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Amniota	ANCESTRAL SPECIES	81				ENSGT01030000234639.A.b ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00530000063359.B
Mammalia	ANCESTRAL SPECIES	83			ENSGT01030000234639.A.b.a.b.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00940000163435 #33	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000168541	ENSGT00940000155904
Theria	ANCESTRAL SPECIES	8	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000168541	ENSGT00940000155904	ENSGT00530000063359.B
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273
Primates	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Cebidae	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Marmoset	MODERN SPECIES	2	LRFN4 (ENSCJAG00000001191) #7	C11orf86 (ENSCJAG00000001141) #8	SYT12 (ENSCJAG00000001134) #9	RHOD (ENSCJAG00000001124) #10	KDM2A (ENSCJAG00000001071) #11	ENSCJAG00000070659 #12	GRK2 (ENSCJAG00000001006) #13	ANKRD13D (ENSCJAG00000001059) #14	SSH3 (ENSCJAG00000000956) #15	RAD9A (ENSCJAG00000047617) #16	POLD4 (ENSCJAG00000085771) #17	CLCF1 (ENSCJAG00000042907) #18	ENSCJAG00000000983 #19	TBC1D10C (ENSCJAG00000000998) #20	CARNS1 (ENSCJAG00000000981) #21	RPS6KB2 (ENSCJAG00000000967) #22	PTPRCAP (ENSCJAG00000000963) #23	CORO1B (ENSCJAG00000000945) #24	GPR152 (ENSCJAG00000000943) #25	CABP4 (ENSCJAG00000000939) #26	TMEM134 (ENSCJAG00000000933) #27	AIP (ENSCJAG00000000929) #28	PITPNM1 (ENSCJAG00000000908) #29	CDK2AP2 (ENSCJAG00000044071) #30	CABP2 (ENSCJAG00000000890) #31	ENSCJAG00000000379 #32	ENSCJAG00000000879 #33	ENSCJAG00000031574 #34	NDUFV1 (ENSCJAG00000000839) #35	ENSCJAG00000041608 #36	TBX10 (ENSCJAG00000071274) #37
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334.g #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Bolivian squirrel monkey	MODERN SPECIES	184	RCE1 (ENSSBOG00000025022)	LRFN4 (ENSSBOG00000002450) #7	PC (ENSSBOG00000026996)	C11orf86 (ENSSBOG00000026041) #8	SYT12 (ENSSBOG00000027954) #9	RHOD (ENSSBOG00000029726) #10	KDM2A (ENSSBOG00000034060) #11	GRK2 (ENSSBOG00000027760) #13	ANKRD13D (ENSSBOG00000034525) #14	SSH3 (ENSSBOG00000034638) #15	POLD4 (ENSSBOG00000030107) #17	CLCF1 (ENSSBOG00000025814) #18	RAD9A (ENSSBOG00000030122) #16	TBC1D10C (ENSSBOG00000022365) #20	CARNS1 (ENSSBOG00000032755) #21	RPS6KB2 (ENSSBOG00000025951) #22	PTPRCAP (ENSSBOG00000021090) #23	CORO1B (ENSSBOG00000034400) #24	CABP4 (ENSSBOG00000022028) #26	TMEM134 (ENSSBOG00000027525) #27	AIP (ENSSBOG00000024333) #28	PITPNM1 (ENSSBOG00000014886) #29	CDK2AP2 (ENSSBOG00000027862) #30	CABP2 (ENSSBOG00000025484) #31	GSTP1 (ENSSBOG00000031760)	ENSSBOG00000030579 #35	ENSSBOG00000028474 #36	TBX10 (ENSSBOG00000027660) #37	ACY3 (ENSSBOG00000026048)	ALDH3B2 (ENSSBOG00000022925)	ENSSBOG00000019661
Capuchin	MODERN SPECIES	102	LRFN4 (ENSCCAG00000015158) #7	PC (ENSCCAG00000037632)	C11orf86 (ENSCCAG00000036118) #8	SYT12 (ENSCCAG00000033518) #9	RHOD (ENSCCAG00000033081) #10	KDM2A (ENSCCAG00000032038) #11	GRK2 (ENSCCAG00000026347) #13	ANKRD13D (ENSCCAG00000027410) #14	SSH3 (ENSCCAG00000009573) #15	POLD4 (ENSCCAG00000019708) #17	CLCF1 (ENSCCAG00000033675) #18	RAD9A (ENSCCAG00000031278) #16	PPP1CA (ENSCCAG00000020614) #19	TBC1D10C (ENSCCAG00000028758) #20	CARNS1 (ENSCCAG00000035608) #21	RPS6KB2 (ENSCCAG00000028374) #22	PTPRCAP (ENSCCAG00000025867) #23	CORO1B (ENSCCAG00000019041) #24	GPR152 (ENSCCAG00000014617) #25	CABP4 (ENSCCAG00000027469) #26	TMEM134 (ENSCCAG00000004430) #27	AIP (ENSCCAG00000027474) #28	PITPNM1 (ENSCCAG00000031570) #29	ENSCCAG00000028353 #30	CABP2 (ENSCCAG00000018244) #31	ENSCCAG00000037776 #33	NDUFV1 (ENSCCAG00000027983) #35	ENSCCAG00000024841 #36	ENSCCAG00000034598	TBX10 (ENSCCAG00000035836) #37	ACY3 (ENSCCAG00000030848)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	411						KDM2A (ENSANAG00000035236) #11	GRK2 (ENSANAG00000017680) #13	ANKRD13D (ENSANAG00000026621) #14	SSH3 (ENSANAG00000027661) #15	POLD4 (ENSANAG00000034188) #17	CLCF1 (ENSANAG00000026225) #18	RAD9A (ENSANAG00000026397) #16	PPP1CA (ENSANAG00000023829) #19	TBC1D10C (ENSANAG00000019534) #20	CARNS1 (ENSANAG00000022851) #21	ENSANAG00000029796 #22	PTPRCAP (ENSANAG00000032799) #23	CORO1B (ENSANAG00000021241) #24	CABP4 (ENSANAG00000024753) #26	GPR152 (ENSANAG00000030207) #25	TMEM134 (ENSANAG00000033007) #27	AIP (ENSANAG00000022168) #28	PITPNM1 (ENSANAG00000025829) #29	CDK2AP2 (ENSANAG00000034157) #30	CABP2 (ENSANAG00000030444) #31	GSTP1 (ENSANAG00000031563)	NDUFV1 (ENSANAG00000029177) #35	ENSANAG00000026619	ENSANAG00000026791 #36	TBX10 (ENSANAG00000029548) #37	ACY3 (ENSANAG00000024838)
Mas night monkey	MODERN SPECIES	604	COL9A2 (ENSANAG00000036329)	SMAP2 (ENSANAG00000035291)	ZFP69B (ENSANAG00000033029)	ZFP69 (ENSANAG00000027896)	ENSANAG00000020223	RIMS3 (ENSANAG00000029140)	NFYC (ENSANAG00000020951)	KCNQ4 (ENSANAG00000021072)	CITED4 (ENSANAG00000036146)	ENSANAG00000037167	SMC2 (ENSANAG00000030051)	ENSANAG00000026565	ENSANAG00000019822	NIPSNAP3B (ENSANAG00000024274)	ABCA1 (ENSANAG00000033387)	ENSANAG00000019975 #22	SLC44A1 (ENSANAG00000027494)	ENSANAG00000020796	FSD1L (ENSANAG00000026736)	FKTN (ENSANAG00000031912)	TAL2 (ENSANAG00000005973)	TMEM38B (ENSANAG00000019169)	ZNF462 (ENSANAG00000035393)	RAD23B (ENSANAG00000021451)	KLF4 (ENSANAG00000034670)	ENSANAG00000020202	ELP1 (ENSANAG00000033165)	ENSANAG00000037326	ABITRAM (ENSANAG00000038404)	CTNNAL1 (ENSANAG00000032279)	TMEM245 (ENSANAG00000032340)
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731.c #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a.b #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334.i #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731.c #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a.b #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334.i #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Pan	ANCESTRAL SPECIES	1	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731.c #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a.b #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334.i #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Chimpanzee	MODERN SPECIES	2	PC (ENSPTRG00000023133)	LRFN4 (ENSPTRG00000003941) #7	C11H11orf86 (ENSPTRG00000003942) #8	SYT12 (ENSPTRG00000003943) #9	RHOD (ENSPTRG00000003944) #10	KDM2A (ENSPTRG00000003945) #11	GRK2 (ENSPTRG00000003946) #13	ANKRD13D (ENSPTRG00000003947) #14	SSH3 (ENSPTRG00000003949) #15	POLD4 (ENSPTRG00000003950) #17	CLCF1 (ENSPTRG00000047312) #18	RAD9A (ENSPTRG00000044525) #16	PPP1CA (ENSPTRG00000005449) #19	TBC1D10C (ENSPTRG00000003954) #20	CARNS1 (ENSPTRG00000028514) #21	RPS6KB2 (ENSPTRG00000003957) #22	PTPRCAP (ENSPTRG00000033878) #23	CORO1B (ENSPTRG00000003959) #24	GPR152 (ENSPTRG00000003960) #25	CABP4 (ENSPTRG00000050164) #26	TMEM134 (ENSPTRG00000003963) #27	AIP (ENSPTRG00000003964) #28	PITPNM1 (ENSPTRG00000003965) #29	CDK2AP2 (ENSPTRG00000003966) #30	CABP2 (ENSPTRG00000003967) #31	GSTP1 (ENSPTRG00000003968)	NDUFV1 (ENSPTRG00000003969) #35	DOC2G (ENSPTRG00000052755)	NUDT8 (ENSPTRG00000003971)	TBX10 (ENSPTRG00000003972) #37	ACY3 (ENSPTRG00000003973)
Bonobo	MODERN SPECIES	2	PC (ENSPPAG00000038616)	LRFN4 (ENSPPAG00000028662) #7	C11orf86 (ENSPPAG00000044055) #8	SYT12 (ENSPPAG00000029779) #9	RHOD (ENSPPAG00000029370) #10	KDM2A (ENSPPAG00000037841) #11	GRK2 (ENSPPAG00000028647) #13	ANKRD13D (ENSPPAG00000036041) #14	SSH3 (ENSPPAG00000016898) #15	POLD4 (ENSPPAG00000035704) #17	ENSPPAG00000035536 #18	RAD9A (ENSPPAG00000031016) #16	PPP1CA (ENSPPAG00000023894) #19	TBC1D10C (ENSPPAG00000042701) #20	CARNS1 (ENSPPAG00000032452) #21	RPS6KB2 (ENSPPAG00000006795) #22	PTPRCAP (ENSPPAG00000044074) #23	CORO1B (ENSPPAG00000030008) #24	GPR152 (ENSPPAG00000008770) #25	CABP4 (ENSPPAG00000031081) #26	TMEM134 (ENSPPAG00000038698) #27	AIP (ENSPPAG00000026775) #28	PITPNM1 (ENSPPAG00000044125) #29	CDK2AP2 (ENSPPAG00000043090) #30	ENSPPAG00000043180 #31	GSTP1 (ENSPPAG00000043169)	NDUFV1 (ENSPPAG00000043544) #35	NUDT8 (ENSPPAG00000043158)	TBX10 (ENSPPAG00000030171) #37	ACY3 (ENSPPAG00000031478)	ALDH3B2 (ENSPPAG00000032213)
Human	MODERN SPECIES	2	LRFN4 (ENSG00000173621) #7	C11orf86 (ENSG00000173237) #8	SYT12 (ENSG00000173227) #9	RHOD (ENSG00000173156) #10	KDM2A (ENSG00000173120) #11	GRK2 (ENSG00000173020) #13	ANKRD13D (ENSG00000172932) #14	SSH3 (ENSG00000172830) #15	RAD9A (ENSG00000172613) #16	POLD4 (ENSG00000175482) #17	ENSG00000256514	CLCF1 (ENSG00000175505) #18	PPP1CA (ENSG00000172531) #19	TBC1D10C (ENSG00000175463) #20	CARNS1 (ENSG00000172508) #21	RPS6KB2 (ENSG00000175634) #22	PTPRCAP (ENSG00000213402) #23	CORO1B (ENSG00000172725) #24	GPR152 (ENSG00000175514) #25	CABP4 (ENSG00000175544) #26	TMEM134 (ENSG00000172663) #27	AIP (ENSG00000110711) #28	PITPNM1 (ENSG00000110697) #29	CDK2AP2 (ENSG00000167797) #30	CABP2 (ENSG00000167791) #31	GSTP1 (ENSG00000084207)	NDUFV1 (ENSG00000167792) #35	NUDT8 (ENSG00000167799)	TBX10 (ENSG00000167800) #37	ACY3 (ENSG00000132744)	ALDH3B2 (ENSG00000132746)
Gorilla	MODERN SPECIES	2	LRFN4 (ENSGGOG00000014503) #7	C11orf86 (ENSGGOG00000039309) #8	SYT12 (ENSGGOG00000014969) #9	RHOD (ENSGGOG00000014974) #10	ENSGGOG00000001636 #11	GRK2 (ENSGGOG00000011297) #13	ANKRD13D (ENSGGOG00000011308) #14	SSH3 (ENSGGOG00000011320) #15	POLD4 (ENSGGOG00000016028) #17	ENSGGOG00000008219 #18	RAD9A (ENSGGOG00000009974) #16	ENSGGOG00000039742 #16	PPP1CA (ENSGGOG00000009981) #19	TBC1D10C (ENSGGOG00000009988) #20	CARNS1 (ENSGGOG00000009995) #21	RPS6KB2 (ENSGGOG00000009999) #22	PTPRCAP (ENSGGOG00000010011) #23	CORO1B (ENSGGOG00000010013) #24	GPR152 (ENSGGOG00000010019) #25	CABP4 (ENSGGOG00000010025) #26	TMEM134 (ENSGGOG00000042077) #27	AIP (ENSGGOG00000010142) #28	PITPNM1 (ENSGGOG00000010148) #29	CDK2AP2 (ENSGGOG00000010159) #30	ENSGGOG00000010165 #31	GSTP1 (ENSGGOG00000013849)	NDUFV1 (ENSGGOG00000011943) #35	ENSGGOG00000023590	NUDT8 (ENSGGOG00000011953)	TBX10 (ENSGGOG00000011961) #37	ACY3 (ENSGGOG00000011979)
Orangutan	MODERN SPECIES	2	LRFN4 (ENSPPYG00000003006) #7	PC (ENSPPYG00000003005)	C11orf86 (ENSPPYG00000003004) #8	SYT12 (ENSPPYG00000003003) #9	RHOD (ENSPPYG00000003002) #10	KDM2A (ENSPPYG00000003001) #11	GRK2 (ENSPPYG00000003000) #13	ANKRD13D (ENSPPYG00000002999) #14	SSH3 (ENSPPYG00000002998) #15	ENSPPYG00000034141	CLCF1 (ENSPPYG00000036168) #18	RAD9A (ENSPPYG00000002996) #16	PPP1CA (ENSPPYG00000002995) #19	TBC1D10C (ENSPPYG00000002994) #20	CARNS1 (ENSPPYG00000029387) #21	RPS6KB2 (ENSPPYG00000002993) #22	PTPRCAP (ENSPPYG00000037728) #23	CORO1B (ENSPPYG00000002992) #24	GPR152 (ENSPPYG00000002991) #25	CABP4 (ENSPPYG00000002990) #26	TMEM134 (ENSPPYG00000004100) #27	AIP (ENSPPYG00000002989) #28	PITPNM1 (ENSPPYG00000002988) #29	CDK2AP2 (ENSPPYG00000002987) #30	CABP2 (ENSPPYG00000002986) #31	GSTP1 (ENSPPYG00000002985)	NDUFV1 (ENSPPYG00000002983) #35	NUDT8 (ENSPPYG00000029677)	TBX10 (ENSPPYG00000002981) #37	ACY3 (ENSPPYG00000002980)	ALDH3B2 (ENSPPYG00000038703)
Gibbon	MODERN SPECIES	19	RCE1 (ENSNLEG00000006267)	PC (ENSNLEG00000006274)	LRFN4 (ENSNLEG00000006285) #7	SYT12 (ENSNLEG00000006288) #9	RHOD (ENSNLEG00000027419) #10	KDM2A (ENSNLEG00000006301) #11	GRK2 (ENSNLEG00000006311) #13	ANKRD13D (ENSNLEG00000006324) #14	SSH3 (ENSNLEG00000006321) #15	ENSNLEG00000029224	ENSNLEG00000006348 #18	RAD9A (ENSNLEG00000006355) #16	PPP1CA (ENSNLEG00000006360) #19	TBC1D10C (ENSNLEG00000006381) #20	CARNS1 (ENSNLEG00000006317) #21	RPS6KB2 (ENSNLEG00000006392) #22	PTPRCAP (ENSNLEG00000006397) #23	CORO1B (ENSNLEG00000006399) #24	GPR152 (ENSNLEG00000018914) #25	CABP4 (ENSNLEG00000006425) #26	TMEM134 (ENSNLEG00000006430) #27	AIP (ENSNLEG00000006435) #28	PITPNM1 (ENSNLEG00000026976) #29	CDK2AP2 (ENSNLEG00000006438) #30	ENSNLEG00000006441 #31	ENSNLEG00000006448 #33	NDUFV1 (ENSNLEG00000006458) #35	ENSNLEG00000028816	ENSNLEG00000006493 #37	ACY3 (ENSNLEG00000006494)	ALDH3B2 (ENSNLEG00000006499)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Black snub-nosed monkey	MODERN SPECIES	1876	LRFN4 (ENSRBIG00000037474) #7	C11orf86 (ENSRBIG00000029927) #8	SYT12 (ENSRBIG00000042251) #9	RHOD (ENSRBIG00000030604) #10	KDM2A (ENSRBIG00000039553) #11	GRK2 (ENSRBIG00000036260) #13	ANKRD13D (ENSRBIG00000044738) #14	SSH3 (ENSRBIG00000043430) #15	ENSRBIG00000029788	POLD4 (ENSRBIG00000036506) #17	CLCF1 (ENSRBIG00000029063) #18	RAD9A (ENSRBIG00000032418) #16	PPP1CA (ENSRBIG00000043947) #19	TBC1D10C (ENSRBIG00000032877) #20	CARNS1 (ENSRBIG00000040033) #21	RPS6KB2 (ENSRBIG00000036100) #22	PTPRCAP (ENSRBIG00000044684) #23	CORO1B (ENSRBIG00000043610) #24	GPR152 (ENSRBIG00000041858) #25	CABP4 (ENSRBIG00000042584) #26	TMEM134 (ENSRBIG00000030826) #27	AIP (ENSRBIG00000036498) #28	PITPNM1 (ENSRBIG00000011676) #29	CDK2AP2 (ENSRBIG00000010171) #30	CABP2 (ENSRBIG00000042812) #31	GSTP1 (ENSRBIG00000041246)	NDUFV1 (ENSRBIG00000038931) #35	ENSRBIG00000031438	NUDT8 (ENSRBIG00000039414)	TBX10 (ENSRBIG00000031114) #37	ACY3 (ENSRBIG00000001203)
Golden snub-nosed monkey	MODERN SPECIES	1279	PC (ENSRROG00000028920)	C11orf86 (ENSRROG00000038998) #8	SYT12 (ENSRROG00000027482) #9	RHOD (ENSRROG00000042223) #10	ENSRROG00000031731	KDM2A (ENSRROG00000045014) #11	GRK2 (ENSRROG00000032925) #13	ANKRD13D (ENSRROG00000041027) #14	SSH3 (ENSRROG00000036044) #15	POLD4 (ENSRROG00000037792) #17	CLCF1 (ENSRROG00000045504) #18	RAD9A (ENSRROG00000035222) #16	PPP1CA (ENSRROG00000039846) #19	TBC1D10C (ENSRROG00000019804) #20	CARNS1 (ENSRROG00000005925) #21	RPS6KB2 (ENSRROG00000044662) #22	PTPRCAP (ENSRROG00000015187) #23	CORO1B (ENSRROG00000039319) #24	CABP4 (ENSRROG00000039803) #26	TMEM134 (ENSRROG00000040406) #27	AIP (ENSRROG00000045104) #28	PITPNM1 (ENSRROG00000007043) #29	CDK2AP2 (ENSRROG00000043366) #30	CABP2 (ENSRROG00000037183) #31	GSTP1 (ENSRROG00000027191)	NDUFV1 (ENSRROG00000037664) #35	ENSRROG00000026586	NUDT8 (ENSRROG00000037097)	TBX10 (ENSRROG00000039702) #37	ACY3 (ENSRROG00000039646)	ALDH3B2 (ENSRROG00000030687)
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163889	ENSGT00940000154816.a.a #37
Vervet Monkey	MODERN SPECIES		PC (ENSCSAG00000008427)	C11orf86 (ENSCSAG00000008435) #8	SYT12 (ENSCSAG00000008443) #9	RHOD (ENSCSAG00000008459) #10	ENSCSAG00000019166	KDM2A (ENSCSAG00000008476) #11	GRK2 (ENSCSAG00000008492) #13	ANKRD13D (ENSCSAG00000008501) #14	SSH3 (ENSCSAG00000008510) #15	POLD4 (ENSCSAG00000008521) #17	CLCF1 (ENSCSAG00000008530) #18	RAD9A (ENSCSAG00000008542) #16	PPP1CA (ENSCSAG00000008548) #19	TBC1D10C (ENSCSAG00000008558) #20	CARNS1 (ENSCSAG00000008580) #21	RPS6KB2 (ENSCSAG00000008598) #22	PTPRCAP (ENSCSAG00000019165) #23	CORO1B (ENSCSAG00000008604) #24	GPR152 (ENSCSAG00000018962) #25	CABP4 (ENSCSAG00000008624) #26	TMEM134 (ENSCSAG00000008641) #27	AIP (ENSCSAG00000008652) #28	PITPNM1 (ENSCSAG00000008662) #29	CDK2AP2 (ENSCSAG00000008667) #30	CABP2 (ENSCSAG00000008676) #31	GSTP1 (ENSCSAG00000008684)	NDUFV1 (ENSCSAG00000008693) #35	ENSCSAG00000008700	ENSCSAG00000008710 #36	TBX10 (ENSCSAG00000008726) #37	ACY3 (ENSCSAG00000008735)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00940000173013	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Rhesus	MODERN SPECIES	5	RCE1 (ENSMMUG00000057966)	LRFN4 (ENSMMUG00000004534) #7	PC (ENSMMUG00000004533)	C14H11orf86 (ENSMMUG00000014772) #8	SYT12 (ENSMMUG00000011741) #9	RHOD (ENSMMUG00000031214) #10	KDM2A (ENSMMUG00000008771) #11	GRK2 (ENSMMUG00000015925) #13	ANKRD13D (ENSMMUG00000015928) #14	SSH3 (ENSMMUG00000015932) #15	POLD4 (ENSMMUG00000004523) #17	RAD9A (ENSMMUG00000017275) #16	PPP1CA (ENSMMUG00000017278) #19	TBC1D10C (ENSMMUG00000017280) #20	CARNS1 (ENSMMUG00000005480) #21	RPS6KB2 (ENSMMUG00000005483) #22	PTPRCAP (ENSMMUG00000005486) #23	CORO1B (ENSMMUG00000005488) #24	ENSMMUG00000053378	GPR152 (ENSMMUG00000005489) #25	CABP4 (ENSMMUG00000052347) #26	TMEM134 (ENSMMUG00000005493) #27	AIP (ENSMMUG00000011817) #28	PITPNM1 (ENSMMUG00000011821) #29	CDK2AP2 (ENSMMUG00000057395) #30	CABP2 (ENSMMUG00000011828) #31	GSTP1 (ENSMMUG00000018524)	NDUFV1 (ENSMMUG00000018526) #35	DOC2G (ENSMMUG00000018527)	ENSMMUG00000062171	NUDT8 (ENSMMUG00000042611)
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000050217	KDM2A (ENSMFAG00000031721) #11	GRK2 (ENSMFAG00000002282) #13	ANKRD13D (ENSMFAG00000061318) #14	SSH3 (ENSMFAG00000002317) #15	ENSMFAG00000012569	ENSMFAG00000053079	ENSMFAG00000045971	CLCF1 (ENSMFAG00000039712) #18	ENSMFAG00000053215	RAD9A (ENSMFAG00000041314) #16	PPP1CA (ENSMFAG00000001854) #19	TBC1D10C (ENSMFAG00000045050) #20	CARNS1 (ENSMFAG00000046293) #21	ENSMFAG00000051490	RPS6KB2 (ENSMFAG00000031507) #22	CORO1B (ENSMFAG00000037995) #24	CABP4 (ENSMFAG00000038440) #26	ENSMFAG00000056898	TMEM134 (ENSMFAG00000030408) #27	AIP (ENSMFAG00000034062) #28	PITPNM1 (ENSMFAG00000046144) #29	CDK2AP2 (ENSMFAG00000033158) #30	CABP2 (ENSMFAG00000003212) #31	GSTP1 (ENSMFAG00000032564)	ENSMFAG00000051463	ENSMFAG00000061940	NDUFV1 (ENSMFAG00000038730) #35	TBX10 (ENSMFAG00000007056) #37	ACY3 (ENSMFAG00000046339)	ALDH3B2 (ENSMFAG00000044295)
Pig-tailed macaque	MODERN SPECIES	433	LRFN4 (ENSMNEG00000039420) #7	C11orf86 (ENSMNEG00000042948) #8	SYT12 (ENSMNEG00000035919) #9	RHOD (ENSMNEG00000034211) #10	KDM2A (ENSMNEG00000028013) #11	ENSMNEG00000031090	GRK2 (ENSMNEG00000007223) #13	ANKRD13D (ENSMNEG00000035052) #14	SSH3 (ENSMNEG00000031930) #15	RAD9A (ENSMNEG00000043395) #16	POLD4 (ENSMNEG00000013342) #17	CLCF1 (ENSMNEG00000034658) #18	PPP1CA (ENSMNEG00000042253) #19	TBC1D10C (ENSMNEG00000031857) #20	CARNS1 (ENSMNEG00000038393) #21	RPS6KB2 (ENSMNEG00000032247) #22	PTPRCAP (ENSMNEG00000043708) #23	CORO1B (ENSMNEG00000044473) #24	GPR152 (ENSMNEG00000030403) #25	CABP4 (ENSMNEG00000032138) #26	TMEM134 (ENSMNEG00000041551) #27	AIP (ENSMNEG00000039995) #28	PITPNM1 (ENSMNEG00000043351) #29	CDK2AP2 (ENSMNEG00000042636) #30	CABP2 (ENSMNEG00000045390) #31	GSTP1 (ENSMNEG00000044300)	NDUFV1 (ENSMNEG00000041086) #35	ENSMNEG00000033340	NUDT8 (ENSMNEG00000041484)	TBX10 (ENSMNEG00000032749) #37	ACY3 (ENSMNEG00000041493)
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Olive baboon	MODERN SPECIES	3	PC (ENSPANG00000011195)	LRFN4 (ENSPANG00000026466) #7	C11orf86 (ENSPANG00000029904) #8	SYT12 (ENSPANG00000004416) #9	RHOD (ENSPANG00000004925) #10	KDM2A (ENSPANG00000010861) #11	GRK2 (ENSPANG00000024198) #13	ANKRD13D (ENSPANG00000008594) #14	SSH3 (ENSPANG00000023601) #15	POLD4 (ENSPANG00000007733) #17	CLCF1 (ENSPANG00000022856) #18	RAD9A (ENSPANG00000003109) #16	PPP1CA (ENSPANG00000009836) #19	TBC1D10C (ENSPANG00000006614) #20	CARNS1 (ENSPANG00000011528) #21	RPS6KB2 (ENSPANG00000011196) #22	PTPRCAP (ENSPANG00000004926) #23	CORO1B (ENSPANG00000015784) #24	GPR152 (ENSPANG00000012974) #25	CABP4 (ENSPANG00000011704) #26	TMEM134 (ENSPANG00000007007) #27	AIP (ENSPANG00000006615) #28	PITPNM1 (ENSPANG00000015330) #29	CDK2AP2 (ENSPANG00000004749) #30	CABP2 (ENSPANG00000026467) #31	GSTP1 (ENSPANG00000004067)	NDUFV1 (ENSPANG00000011236) #35	ENSPANG00000008595	NUDT8 (ENSPANG00000009837)	TBX10 (ENSPANG00000006501) #37	ACY3 (ENSPANG00000024740)
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00910000148113	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Sooty mangabey	MODERN SPECIES	518	LRFN4 (ENSCATG00000027775) #7	PC (ENSCATG00000039663)	C11orf86 (ENSCATG00000038272) #8	SYT12 (ENSCATG00000038163) #9	RHOD (ENSCATG00000029650) #10	KDM2A (ENSCATG00000035052) #11	GRK2 (ENSCATG00000020325) #13	ANKRD13D (ENSCATG00000030715) #14	SSH3 (ENSCATG00000039482) #15	POLD4 (ENSCATG00000035283) #17	CLCF1 (ENSCATG00000041096) #18	RAD9A (ENSCATG00000020148) #16	PPP1CA (ENSCATG00000031120) #19	TBC1D10C (ENSCATG00000035510) #20	CARNS1 (ENSCATG00000032796) #21	RPS6KB2 (ENSCATG00000031028) #22	PTPRCAP (ENSCATG00000041535) #23	CORO1B (ENSCATG00000039163) #24	CABP4 (ENSCATG00000038209) #26	TMEM134 (ENSCATG00000041128) #27	AIP (ENSCATG00000030555) #28	PITPNM1 (ENSCATG00000039132) #29	CDK2AP2 (ENSCATG00000036893) #30	CABP2 (ENSCATG00000029380) #31	GSTP1 (ENSCATG00000032849)	NDUFV1 (ENSCATG00000028405) #35	ENSCATG00000030569	NUDT8 (ENSCATG00000029910)	TBX10 (ENSCATG00000029511) #37	ACY3 (ENSCATG00000030863)	ALDH3B2 (ENSCATG00000015105)
Drill	MODERN SPECIES	942	ENSMLEG00000038971 #7	C11orf86 (ENSMLEG00000043661) #8	SYT12 (ENSMLEG00000028297) #9	RHOD (ENSMLEG00000031534) #10	KDM2A (ENSMLEG00000026026) #11	ENSMLEG00000042837	GRK2 (ENSMLEG00000034713) #13	SSH3 (ENSMLEG00000033996) #15	ENSMLEG00000024669	POLD4 (ENSMLEG00000039964) #17	CLCF1 (ENSMLEG00000000061) #18	RAD9A (ENSMLEG00000033976) #16	PPP1CA (ENSMLEG00000028349) #19	TBC1D10C (ENSMLEG00000043951) #20	CARNS1 (ENSMLEG00000041533) #21	RPS6KB2 (ENSMLEG00000028690) #22	PTPRCAP (ENSMLEG00000032460) #23	CORO1B (ENSMLEG00000031164) #24	GPR152 (ENSMLEG00000019825) #25	CABP4 (ENSMLEG00000030918) #26	TMEM134 (ENSMLEG00000027441) #27	AIP (ENSMLEG00000031372) #28	PITPNM1 (ENSMLEG00000030151) #29	CDK2AP2 (ENSMLEG00000040207) #30	CABP2 (ENSMLEG00000010923) #31	GSTP1 (ENSMLEG00000007972)	NDUFV1 (ENSMLEG00000041364) #35	NUDT8 (ENSMLEG00000008171)	ENSMLEG00000030742	ACY3 (ENSMLEG00000031989)	ALDH3B2 (ENSMLEG00000028402)
Tarsier	MODERN SPECIES	2329																RPS6KB2 (ENSTSYG00000027147) #22	CORO1B (ENSTSYG00000029285) #24	CABP4 (ENSTSYG00000030022) #26	TMEM134 (ENSTSYG00000031661) #27	AIP (ENSTSYG00000031634) #28
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374	ENSGT00940000154816.a.a #37
Mouse lemur	MODERN SPECIES	27	LRFN4 (ENSMICG00000034770) #7	C11orf86 (ENSMICG00000026449) #8	SYT12 (ENSMICG00000015472) #9	RHOD (ENSMICG00000015500) #10	KDM2A (ENSMICG00000004044) #11	GRK2 (ENSMICG00000004063) #13	ANKRD13D (ENSMICG00000004074) #14	SSH3 (ENSMICG00000004087) #15	ENSMICG00000012349	POLD4 (ENSMICG00000004091) #17	CLCF1 (ENSMICG00000029277) #18	RAD9A (ENSMICG00000035662) #16	PPP1CA (ENSMICG00000004103) #19	TBC1D10C (ENSMICG00000004107) #20	CARNS1 (ENSMICG00000004109) #21	RPS6KB2 (ENSMICG00000004111) #22	CORO1B (ENSMICG00000004114) #24	CABP4 (ENSMICG00000004133) #26	TMEM134 (ENSMICG00000031454) #27	AIP (ENSMICG00000037390) #28	PITPNM1 (ENSMICG00000004138) #29	CDK2AP2 (ENSMICG00000029533) #30	CABP2 (ENSMICG00000006052) #31	GSTP1 (ENSMICG00000035404)	NDUFV1 (ENSMICG00000038015) #35	ENSMICG00000034887	ENSMICG00000031375 #36	ENSMICG00000038049	ACY3 (ENSMICG00000010175)	ALDH3B2 (ENSMICG00000002573)	UNC93B1 (ENSMICG00000009511)
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Coquerels sifaka	MODERN SPECIES	124	LRFN4 (ENSPCOG00000028690) #7	PC (ENSPCOG00000018736)	C11orf86 (ENSPCOG00000024212) #8	SYT12 (ENSPCOG00000013770) #9	RHOD (ENSPCOG00000028536) #10	KDM2A (ENSPCOG00000009542) #11	GRK2 (ENSPCOG00000026839) #13	ANKRD13D (ENSPCOG00000022746) #14	SSH3 (ENSPCOG00000015771) #15	POLD4 (ENSPCOG00000023695) #17	CLCF1 (ENSPCOG00000020098) #18	RAD9A (ENSPCOG00000021291) #16	PPP1CA (ENSPCOG00000026258) #19	TBC1D10C (ENSPCOG00000021827) #20	CARNS1 (ENSPCOG00000026244) #21	RPS6KB2 (ENSPCOG00000018557) #22	PTPRCAP (ENSPCOG00000028437) #23	CORO1B (ENSPCOG00000014764) #24	CABP4 (ENSPCOG00000018937) #26	TMEM134 (ENSPCOG00000014918) #27	AIP (ENSPCOG00000027570) #28	PITPNM1 (ENSPCOG00000025532) #29	CDK2AP2 (ENSPCOG00000017754) #30	CABP2 (ENSPCOG00000027212) #31	ENSPCOG00000013544	GSTP1 (ENSPCOG00000025031)	NDUFV1 (ENSPCOG00000016494) #35	ENSPCOG00000025071	ENSPCOG00000017507 #36	ENSPCOG00000026012	ACY3 (ENSPCOG00000016521)
Greater bamboo lemur	MODERN SPECIES	1196				ENSPSMG00000016956	KDM2A (ENSPSMG00000016988) #11	GRK2 (ENSPSMG00000017115) #13	ENSPSMG00000017196	ANKRD13D (ENSPSMG00000017212) #14	SSH3 (ENSPSMG00000017256) #15	POLD4 (ENSPSMG00000017275) #17	CLCF1 (ENSPSMG00000017291) #18	RAD9A (ENSPSMG00000017323) #16	PPP1CA (ENSPSMG00000017392) #19	TBC1D10C (ENSPSMG00000017434) #20	CARNS1 (ENSPSMG00000017445) #21	RPS6KB2 (ENSPSMG00000017487) #22	PTPRCAP (ENSPSMG00000017495) #23	CORO1B (ENSPSMG00000017512) #24	CABP4 (ENSPSMG00000017519) #26	TMEM134 (ENSPSMG00000017552) #27	AIP (ENSPSMG00000017577) #28	PITPNM1 (ENSPSMG00000017619) #29	CDK2AP2 (ENSPSMG00000017631) #30	CABP2 (ENSPSMG00000017650) #31	ENSPSMG00000017669	GSTP1 (ENSPSMG00000017706)	NDUFV1 (ENSPSMG00000017743) #35	ENSPSMG00000017792	ENSPSMG00000017796 #36	TBX10 (ENSPSMG00000017814) #37	ACY3 (ENSPSMG00000017835)
Bushbaby	MODERN SPECIES	249	RCE1 (ENSOGAG00000010555)	LRFN4 (ENSOGAG00000032101) #7	PC (ENSOGAG00000010560)	SYT12 (ENSOGAG00000025155) #9	RHOD (ENSOGAG00000010570) #10	KDM2A (ENSOGAG00000010623) #11	GRK2 (ENSOGAG00000010638) #13	ANKRD13D (ENSOGAG00000010645) #14	SSH3 (ENSOGAG00000010647) #15	POLD4 (ENSOGAG00000028157) #17	CLCF1 (ENSOGAG00000010653) #18	RAD9A (ENSOGAG00000028665) #16	PPP1CA (ENSOGAG00000033516) #19	TBC1D10C (ENSOGAG00000031940) #20	CARNS1 (ENSOGAG00000010654) #21	RPS6KB2 (ENSOGAG00000010658) #22	PTPRCAP (ENSOGAG00000025048) #23	CORO1B (ENSOGAG00000008262) #24	GPR152 (ENSOGAG00000027135) #25	CABP4 (ENSOGAG00000010618) #26	TMEM134 (ENSOGAG00000030275) #27	AIP (ENSOGAG00000008266) #28	PITPNM1 (ENSOGAG00000008269) #29	CDK2AP2 (ENSOGAG00000008275) #30	CABP2 (ENSOGAG00000032757) #31	ENSOGAG00000001869 #33	NDUFV1 (ENSOGAG00000000781) #35	ENSOGAG00000025265	ENSOGAG00000000783 #36	ENSOGAG00000000784	ACY3 (ENSOGAG00000000785)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273
Tree shrew	MODERN SPECIES	4042																RPS6KB2 (ENSTBEG00000013964) #22
Glires	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT01100000264273	ENSGT00940000162875	ENSGT00940000162775 #36
Lagomorpha	ANCESTRAL SPECIES	362															ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26
Pika	MODERN SPECIES	3446															ENSOPRG00000001032 #21	RPS6KB2 (ENSOPRG00000001039) #22	CORO1B (ENSOPRG00000001058) #24	GPR152 (ENSOPRG00000001080) #25	ENSOPRG00000001087 #26
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT01100000264273	ENSGT00940000162875	ENSGT00940000162775 #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT01100000264273	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Arctic ground squirrel	MODERN SPECIES	172	LRFN4 (ENSUPAG00010008457) #7	PC (ENSUPAG00010008269)	C11orf86 (ENSUPAG00010008258) #8	SYT12 (ENSUPAG00010008251) #9	RHOD (ENSUPAG00010008245) #10	KDM2A (ENSUPAG00010008235) #11	GRK2 (ENSUPAG00010008194) #13	ANKRD13D (ENSUPAG00010008166) #14	SSH3 (ENSUPAG00010008136) #15	POLD4 (ENSUPAG00010008127) #17	CLCF1 (ENSUPAG00010008123) #18	RAD9A (ENSUPAG00010008112) #16	PPP1CA (ENSUPAG00010008103) #19	TBC1D10C (ENSUPAG00010008076) #20	CARNS1 (ENSUPAG00010008057) #21	RPS6KB2 (ENSUPAG00010008011) #22	PTPRCAP (ENSUPAG00010008006) #23	CORO1B (ENSUPAG00010007990) #24	GPR152 (ENSUPAG00010007987) #25	CABP4 (ENSUPAG00010007974) #26	TMEM134 (ENSUPAG00010007965) #27	AIP (ENSUPAG00010007946) #28	PITPNM1 (ENSUPAG00010007905) #29	CDK2AP2 (ENSUPAG00010007891) #30	CABP2 (ENSUPAG00010007845) #31	GSTP1 (ENSUPAG00010007817)	NDUFV1 (ENSUPAG00010007803) #35	ENSUPAG00010007785	ENSUPAG00010007775 #36	ENSUPAG00010007771	ACY3 (ENSUPAG00010007756)
Squirrel	MODERN SPECIES	199	ENSSTOG00000024101	PC (ENSSTOG00000009227)	C11orf86 (ENSSTOG00000033450) #8	SYT12 (ENSSTOG00000011498) #9	RHOD (ENSSTOG00000013778) #10	KDM2A (ENSSTOG00000003355) #11	GRK2 (ENSSTOG00000015686) #13	ANKRD13D (ENSSTOG00000015689) #14	SSH3 (ENSSTOG00000015693) #15	POLD4 (ENSSTOG00000015701) #17	CLCF1 (ENSSTOG00000015702) #18	RAD9A (ENSSTOG00000021365) #16	PPP1CA (ENSSTOG00000019550) #19	TBC1D10C (ENSSTOG00000015704) #20	CARNS1 (ENSSTOG00000026187) #21	RPS6KB2 (ENSSTOG00000026088) #22	PTPRCAP (ENSSTOG00000032084) #23	CORO1B (ENSSTOG00000015711) #24	GPR152 (ENSSTOG00000031517) #25	CABP4 (ENSSTOG00000019909) #26	TMEM134 (ENSSTOG00000015718) #27	AIP (ENSSTOG00000015721) #28	PITPNM1 (ENSSTOG00000027855) #29	CDK2AP2 (ENSSTOG00000024042) #30	CABP2 (ENSSTOG00000014876) #31	GSTP1 (ENSSTOG00000025905)	NDUFV1 (ENSSTOG00000005850) #35	ENSSTOG00000021128	ENSSTOG00000024208 #36	TBX10 (ENSSTOG00000011629) #37	ACY3 (ENSSTOG00000015148)
Alpin marmot	MODERN SPECIES	86	RCE1 (ENSMMMG00000021852)	PC (ENSMMMG00000021862)	LRFN4 (ENSMMMG00000021894) #7	C11orf86 (ENSMMMG00000021900) #8	SYT12 (ENSMMMG00000021910) #9	RHOD (ENSMMMG00000021915) #10	KDM2A (ENSMMMG00000021919) #11	GRK2 (ENSMMMG00000021938) #13	ANKRD13D (ENSMMMG00000021943) #14	SSH3 (ENSMMMG00000021948) #15	POLD4 (ENSMMMG00000021956) #17	CLCF1 (ENSMMMG00000021958) #18	RAD9A (ENSMMMG00000021959) #16	PPP1CA (ENSMMMG00000021961) #19	TBC1D10C (ENSMMMG00000021967) #20	RPS6KB2 (ENSMMMG00000021969) #22	PTPRCAP (ENSMMMG00000021981) #23	CORO1B (ENSMMMG00000021982) #24	GPR152 (ENSMMMG00000021984) #25	CABP4 (ENSMMMG00000021985) #26	TMEM134 (ENSMMMG00000021986) #27	AIP (ENSMMMG00000022002) #28	PITPNM1 (ENSMMMG00000000005) #29	CABP2 (ENSMMMG00000000025) #31	GSTP1 (ENSMMMG00000000041)	NDUFV1 (ENSMMMG00000000065) #35	ENSMMMG00000000088	NUDT8 (ENSMMMG00000000113)	ENSMMMG00000000133	ACY3 (ENSMMMG00000000156)	ALDH3B2 (ENSMMMG00000000185)
Eurasian red squirrel	MODERN SPECIES	2	PC (ENSSVLG00005005841)	C11orf86 (ENSSVLG00005005788) #8	SYT12 (ENSSVLG00005005751) #9	RHOD (ENSSVLG00005005696) #10	KDM2A (ENSSVLG00005005582) #11	GRK2 (ENSSVLG00005005546) #13	ANKRD13D (ENSSVLG00005005506) #14	SSH3 (ENSSVLG00005005420) #15	ENSSVLG00005005401	POLD4 (ENSSVLG00005005332) #17	CLCF1 (ENSSVLG00005005308) #18	RAD9A (ENSSVLG00005005281) #16	PPP1CA (ENSSVLG00005005219) #19	TBC1D10C (ENSSVLG00005005134) #20	CARNS1 (ENSSVLG00005005060) #21	RPS6KB2 (ENSSVLG00005005042) #22	PTPRCAP (ENSSVLG00005005019) #23	CORO1B (ENSSVLG00005004995) #24	CABP4 (ENSSVLG00005004965) #26	TMEM134 (ENSSVLG00005004915) #27	AIP (ENSSVLG00005004870) #28	PITPNM1 (ENSSVLG00005004838) #29	ENSSVLG00005004797 #30	CABP2 (ENSSVLG00005025399) #31	GSTP1 (ENSSVLG00005025366)	NDUFV1 (ENSSVLG00005025325) #35	ENSSVLG00005025305	ENSSVLG00005025291 #36	TBX10 (ENSSVLG00005025280) #37	ACY3 (ENSSVLG00005025257)	ALDH3B2 (ENSSVLG00005025242)
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT01100000264273	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Guinea pig	MODERN SPECIES	42	PC (ENSCPOG00000006323)	LRFN4 (ENSCPOG00000006338) #7	C11orf86 (ENSCPOG00000025117) #8	SYT12 (ENSCPOG00000022335) #9	RHOD (ENSCPOG00000024684) #10	KDM2A (ENSCPOG00000007134) #11	GRK2 (ENSCPOG00000015449) #13	ANKRD13D (ENSCPOG00000015451) #14	SSH3 (ENSCPOG00000008616) #15	POLD4 (ENSCPOG00000039935) #17	CLCF1 (ENSCPOG00000031948) #18	RAD9A (ENSCPOG00000033699) #16	PPP1CA (ENSCPOG00000032835) #19	TBC1D10C (ENSCPOG00000011171) #20	CARNS1 (ENSCPOG00000010514) #21	RPS6KB2 (ENSCPOG00000010518) #22	PTPRCAP (ENSCPOG00000023825) #23	CORO1B (ENSCPOG00000010527) #24	GPR152 (ENSCPOG00000020561) #25	CABP4 (ENSCPOG00000038418) #26	TMEM134 (ENSCPOG00000034721) #27	AIP (ENSCPOG00000025197) #28	PITPNM1 (ENSCPOG00000011204) #29	CDK2AP2 (ENSCPOG00000033165) #30	CABP2 (ENSCPOG00000023151) #31	GSTP1 (ENSCPOG00000020253)	NDUFV1 (ENSCPOG00000006645) #35	ENSCPOG00000022649	ENSCPOG00000002514 #36	TBX10 (ENSCPOG00000032079) #37	ACY3 (ENSCPOG00000002519)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Degu	MODERN SPECIES	59	LRFN4 (ENSODEG00000017708) #7	PC (ENSODEG00000017864)	C11orf86 (ENSODEG00000017799) #8	SYT12 (ENSODEG00000017589) #9	RHOD (ENSODEG00000017560) #10	KDM2A (ENSODEG00000017690) #11	GRK2 (ENSODEG00000018369) #13	ANKRD13D (ENSODEG00000017636) #14	SSH3 (ENSODEG00000017507) #15	POLD4 (ENSODEG00000017608) #17	CLCF1 (ENSODEG00000017639) #18	RAD9A (ENSODEG00000017457) #16	ENSODEG00000017595 #19	TBC1D10C (ENSODEG00000017872) #20	CARNS1 (ENSODEG00000017571) #21	RPS6KB2 (ENSODEG00000017566) #22	PTPRCAP (ENSODEG00000017616) #23	ENSODEG00000017778 #24	GPR152 (ENSODEG00000017462) #25	CABP4 (ENSODEG00000017561) #26	ENSODEG00000017587 #27	ENSODEG00000017554 #28	ENSODEG00000017542 #29	CDK2AP2 (ENSODEG00000017482) #30	CABP2 (ENSODEG00000017525) #31	ENSODEG00000017726	NDUFV1 (ENSODEG00000017535) #35	ENSODEG00000017660	ENSODEG00000017697 #36	TBX10 (ENSODEG00000017601) #37	ACY3 (ENSODEG00000017439)
Long-tailed chinchilla	MODERN SPECIES	129	PC (ENSCLAG00000016128)	C11orf86 (ENSCLAG00000016624) #8	SYT12 (ENSCLAG00000017132) #9	RHOD (ENSCLAG00000015682) #10	KDM2A (ENSCLAG00000015882) #11	GRK2 (ENSCLAG00000015790) #13	ANKRD13D (ENSCLAG00000015242) #14	SSH3 (ENSCLAG00000016225) #15	POLD4 (ENSCLAG00000016804) #17	CLCF1 (ENSCLAG00000016411) #18	RAD9A (ENSCLAG00000014799) #16	PPP1CA (ENSCLAG00000014515) #19	TBC1D10C (ENSCLAG00000014250) #20	CARNS1 (ENSCLAG00000016069) #21	PTPRCAP (ENSCLAG00000016874) #23	RPS6KB2 (ENSCLAG00000016408) #22	CORO1B (ENSCLAG00000015993) #24	GPR152 (ENSCLAG00000016443) #25	CABP4 (ENSCLAG00000016497) #26	TMEM134 (ENSCLAG00000016841) #27	AIP (ENSCLAG00000016600) #28	ENSCLAG00000015015 #29	CDK2AP2 (ENSCLAG00000014787) #30	CABP2 (ENSCLAG00000015734) #31	GSTP1 (ENSCLAG00000015548)	NDUFV1 (ENSCLAG00000016746) #35	ENSCLAG00000016785	ENSCLAG00000016240 #36	TBX10 (ENSCLAG00000015667) #37	ACY3 (ENSCLAG00000016314)	ALDH3B2 (ENSCLAG00000017296)
Naked mole-rat female	MODERN SPECIES	14	LRFN4 (ENSHGLG00000043687) #7	C11orf86 (ENSHGLG00000010988) #8	SYT12 (ENSHGLG00000010017) #9	RHOD (ENSHGLG00000033630) #10	KDM2A (ENSHGLG00000019342) #11	ENSHGLG00000050293	GRK2 (ENSHGLG00000016215) #13	ANKRD13D (ENSHGLG00000019254) #14	SSH3 (ENSHGLG00000011687) #15	POLD4 (ENSHGLG00000010576) #17	CLCF1 (ENSHGLG00000009725) #18	RAD9A (ENSHGLG00000013829) #16	PPP1CA (ENSHGLG00000013028) #19	TBC1D10C (ENSHGLG00000011863) #20	CARNS1 (ENSHGLG00000015759) #21	RPS6KB2 (ENSHGLG00000011537) #22	PTPRCAP (ENSHGLG00000038375) #23	CORO1B (ENSHGLG00000014004) #24	GPR152 (ENSHGLG00000020880) #25	CABP4 (ENSHGLG00000012191) #26	TMEM134 (ENSHGLG00000046661)	AIP (ENSHGLG00000010309) #28	PITPNM1 (ENSHGLG00000008671) #29	CDK2AP2 (ENSHGLG00000008013) #30	CABP2 (ENSHGLG00000006502) #31	ENSHGLG00000011960	ENSHGLG00000043193	GSTP1 (ENSHGLG00000018697)	NDUFV1 (ENSHGLG00000042428) #35	ENSHGLG00000048694	ENSHGLG00000018636
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163889
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641.b #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641.a #35	ENSGT00390000010641.b #35	ENSGT00940000162875	ENSGT00940000162775 #36
Chinese hamster chok1gshd	MODERN SPECIES	401	Rbm14 (ENSCGRG00001024921)	Rbm4 (ENSCGRG00001016609)	Rbm4b (ENSCGRG00001024693)	Sptbn2 (ENSCGRG00001000301)	ENSCGRG00001015205	Rce1 (ENSCGRG00001010580)	Lrfn4 (ENSCGRG00001017073) #7	Pc (ENSCGRG00001007253)	2010003K11Rik (ENSCGRG00001018760) #8	Syt12 (ENSCGRG00001017074) #9	Rhod (ENSCGRG00001010682) #10	Kdm2a (ENSCGRG00001022950) #11	Grk2 (ENSCGRG00001017520) #13	Ankrd13d (ENSCGRG00001015858) #14	Ssh3 (ENSCGRG00001013911) #15	Rps6kb2 (ENSCGRG00001000810) #22	Ptprcap (ENSCGRG00001010731) #23	Coro1b (ENSCGRG00001004662) #24	Gpr152 (ENSCGRG00001019323) #25	Cabp4 (ENSCGRG00001017640) #26	Tmem134 (ENSCGRG00001010615) #27	Aip (ENSCGRG00001007960) #28	Pitpnm1 (ENSCGRG00001023287) #29	Cdk2ap2 (ENSCGRG00001012920) #30	Cabp2 (ENSCGRG00001008642) #31	Gstp3 (ENSCGRG00001014473)	Gstp1 (ENSCGRG00001020577)	Ndufv1 (ENSCGRG00001015739) #35	Doc2g (ENSCGRG00001018346)	Nudt8 (ENSCGRG00001011961) #36	Tbx10 (ENSCGRG00001004850)
Golden Hamster	MODERN SPECIES	617	Lrfn4 (ENSMAUG00000015996) #7	2010003K11Rik (ENSMAUG00000017841) #8	Syt12 (ENSMAUG00000016129) #9	Rhod (ENSMAUG00000016108) #10	ENSMAUG00000018328 #11	ENSMAUG00000016356 #11	Grk2 (ENSMAUG00000018453) #13	Ankrd13d (ENSMAUG00000016496) #14	Ssh3 (ENSMAUG00000016554) #15	Pold4 (ENSMAUG00000016004) #17	Clcf1 (ENSMAUG00000017012) #18	Rad9a (ENSMAUG00000017164) #16	Ppp1ca (ENSMAUG00000016057) #19	Tbc1d10c (ENSMAUG00000017190) #20	Carns1 (ENSMAUG00000017398) #21	Rps6kb2 (ENSMAUG00000017230) #22	Ptprcap (ENSMAUG00000017359) #23	Coro1b (ENSMAUG00000016373) #24	Gpr152 (ENSMAUG00000016522) #25	Cabp4 (ENSMAUG00000017898) #26	Tmem134 (ENSMAUG00000017612) #27	Aip (ENSMAUG00000017268) #28	Pitpnm1 (ENSMAUG00000016912) #29	Cdk2ap2 (ENSMAUG00000017833) #30	Cabp2 (ENSMAUG00000017000) #31	Gstp3 (ENSMAUG00000016934)	Gstp1 (ENSMAUG00000017855)	ENSMAUG00000017366 #35	Doc2g (ENSMAUG00000017758)	Nudt8 (ENSMAUG00000017149) #36	Tbx10 (ENSMAUG00000019219)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641.b #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Northern American deer mouse	MODERN SPECIES		Lrfn4 (ENSPEMG00000012813) #7	Pcx (ENSPEMG00000019079)	2010003K11Rik (ENSPEMG00000030269) #8	Syt12 (ENSPEMG00000003640) #9	Rhod (ENSPEMG00000018972) #10	Kdm2a (ENSPEMG00000016546) #11	Grk2 (ENSPEMG00000015350) #13	Ankrd13d (ENSPEMG00000011722) #14	Ssh3 (ENSPEMG00000018081) #15	Pold4 (ENSPEMG00000025422) #17	Clcf1 (ENSPEMG00000008786) #18	Rad9a (ENSPEMG00000006275) #16	Ppp1ca (ENSPEMG00000009056) #19	Tbc1d10c (ENSPEMG00000013534) #20	Carns1 (ENSPEMG00000010758) #21	Rps6kb2 (ENSPEMG00000016166) #22	Ptprcap (ENSPEMG00000029717) #23	Coro1b (ENSPEMG00000011980) #24	Gpr152 (ENSPEMG00000008897) #25	Cabp4 (ENSPEMG00000008224) #26	Tmem134 (ENSPEMG00000008430) #27	Aip (ENSPEMG00000005397) #28	Pitpnm1 (ENSPEMG00000001355) #29	Cdk2ap2 (ENSPEMG00000028665) #30	Cabp2 (ENSPEMG00000005235) #31	Gstp3 (ENSPEMG00000030796)	ENSPEMG00000016907	ENSPEMG00000029247	ENSPEMG00000005365	Ndufv1 (ENSPEMG00000011587) #35	Doc2g (ENSPEMG00000005234)
Prairie vole	MODERN SPECIES	16	Lrfn4 (ENSMOCG00000005529) #7	Pcx (ENSMOCG00000017150)	2010003K11Rik (ENSMOCG00000014569) #8	Syt12 (ENSMOCG00000005203) #9	Rhod (ENSMOCG00000017530) #10	Kdm2a (ENSMOCG00000013724) #11	Grk2 (ENSMOCG00000007810) #13	Ankrd13d (ENSMOCG00000001738) #14	Ssh3 (ENSMOCG00000010426) #15	Pold4 (ENSMOCG00000020727) #17	Clcf1 (ENSMOCG00000019813) #18	Rad9a (ENSMOCG00000011209) #16	ENSMOCG00000000843 #19	Tbc1d10c (ENSMOCG00000022473) #20	ENSMOCG00000018725	Rps6kb2 (ENSMOCG00000006354) #22	Ptprcap (ENSMOCG00000021498) #23	Coro1b (ENSMOCG00000015585) #24	Gpr152 (ENSMOCG00000015199) #25	Cabp4 (ENSMOCG00000013395) #26	Tmem134 (ENSMOCG00000002494) #27	Aip (ENSMOCG00000001242) #28	Pitpnm1 (ENSMOCG00000006486) #29	Cdk2ap2 (ENSMOCG00000011876) #30	Cabp2 (ENSMOCG00000022563) #31	Gstp3 (ENSMOCG00000020117)	ENSMOCG00000020246	Ndufv1 (ENSMOCG00000018645) #35	Doc2g (ENSMOCG00000007770)	Nudt8 (ENSMOCG00000002104) #36	Tbx10 (ENSMOCG00000018876)
Murinae	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Mus	ANCESTRAL SPECIES		ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374	ENSGT00390000001189.b
spretus	MODERN SPECIES	10	Lrfn4 (MGP_SPRETEiJ_G0023424) #7	Pcx (MGP_SPRETEiJ_G0023423)	2010003K11Rik (MGP_SPRETEiJ_G0023422) #8	Syt12 (MGP_SPRETEiJ_G0023421) #9	MGP_SPRETEiJ_G0023420 #10	Kdm2a (MGP_SPRETEiJ_G0023419) #11	Grk2 (MGP_SPRETEiJ_G0023418) #13	Ankrd13d (MGP_SPRETEiJ_G0023417) #14	Ssh3 (MGP_SPRETEiJ_G0023416) #15	Pold4 (MGP_SPRETEiJ_G0023415) #17	Clcf1 (MGP_SPRETEiJ_G0023414) #18	Rad9a (MGP_SPRETEiJ_G0023413) #16	Ppp1ca (MGP_SPRETEiJ_G0023412) #19	Tbc1d10c (MGP_SPRETEiJ_G0023411) #20	Carns1 (MGP_SPRETEiJ_G0023410) #21	Rps6kb2 (MGP_SPRETEiJ_G0023409) #22	Ptprcap (MGP_SPRETEiJ_G0023408) #23	Coro1b (MGP_SPRETEiJ_G0023407) #24	Gpr152 (MGP_SPRETEiJ_G0023406) #25	Cabp4 (MGP_SPRETEiJ_G0023405) #26	MGP_SPRETEiJ_G0023404 #28	Pitpnm1 (MGP_SPRETEiJ_G0023403) #29	Cdk2ap2 (MGP_SPRETEiJ_G0023402) #30	Cabp2 (MGP_SPRETEiJ_G0023401) #31	Gstp3 (MGP_SPRETEiJ_G0023400)	Ndufv1 (MGP_SPRETEiJ_G0023399) #35	Doc2g (MGP_SPRETEiJ_G0023398)	Nudt8 (MGP_SPRETEiJ_G0023397) #36	Tbx10 (MGP_SPRETEiJ_G0023396)	Acy3 (MGP_SPRETEiJ_G0023395)	MGP_SPRETEiJ_G0023394
Steppe mouse	MODERN SPECIES	3175	Pcx (ENSMSIG00000005430)	Lrfn4 (ENSMSIG00000005682) #7	2010003K11Rik (ENSMSIG00000005698) #8	Syt12 (ENSMSIG00000005710) #9	ENSMSIG00000005753 #10	Kdm2a (ENSMSIG00000005774) #11	Grk2 (ENSMSIG00000005829) #13	Ankrd13d (ENSMSIG00000005923) #14	ENSMSIG00000005977 #15	Pold4 (ENSMSIG00000006171) #17	Clcf1 (ENSMSIG00000006192) #18	Rad9a (ENSMSIG00000006213) #16	Ppp1ca (ENSMSIG00000006291) #19	Tbc1d10c (ENSMSIG00000006331) #20	Carns1 (ENSMSIG00000006360) #21	Rps6kb2 (ENSMSIG00000006398) #22	Ptprcap (ENSMSIG00000006524) #23	Coro1b (ENSMSIG00000006535) #24	Gpr152 (ENSMSIG00000006566) #25	Cabp4 (ENSMSIG00000006571) #26	ENSMSIG00000006594 #27	ENSMSIG00000006607 #28	Pitpnm1 (ENSMSIG00000006623) #29	Cdk2ap2 (ENSMSIG00000006691) #30	ENSMSIG00000006735 #31	Gstp3 (ENSMSIG00000006920)
Mouse	MODERN SPECIES	10	Pcx (ENSMUSG00000024892)	2010003K11Rik (ENSMUSG00000042041) #8	Syt12 (ENSMUSG00000049303) #9	Rhod (ENSMUSG00000041845) #10	Kdm2a (ENSMUSG00000054611) #11	Grk2 (ENSMUSG00000024858) #13	Ankrd13d (ENSMUSG00000005986) #14	Ssh3 (ENSMUSG00000034616) #15	Pold4 (ENSMUSG00000024854) #17	Gm45928 (ENSMUSG00000117873)	Clcf1 (ENSMUSG00000040663) #18	Rad9a (ENSMUSG00000024824) #16	Ppp1ca (ENSMUSG00000040385) #19	Tbc1d10c (ENSMUSG00000040247) #20	Carns1 (ENSMUSG00000075289) #21	Rps6kb2 (ENSMUSG00000024830) #22	Ptprcap (ENSMUSG00000045826) #23	Coro1b (ENSMUSG00000024835) #24	Gpr152 (ENSMUSG00000044724) #25	Cabp4 (ENSMUSG00000024842) #26	Tmem134 (ENSMUSG00000024845) #27	Aip (ENSMUSG00000024847) #28	Pitpnm1 (ENSMUSG00000024851) #29	Cdk2ap2 (ENSMUSG00000024856) #30	Cabp2 (ENSMUSG00000024857) #31	Gstp3 (ENSMUSG00000058216)	Gstp2 (ENSMUSG00000038155)	Gstp1 (ENSMUSG00000060803)	Ndufv1 (ENSMUSG00000037916) #35	Doc2g (ENSMUSG00000024871)	Nudt8 (ENSMUSG00000110949) #36
Ryukyu mouse	MODERN SPECIES	10	Lrfn4 (MGP_CAROLIEiJ_G0022510) #7	Pcx (MGP_CAROLIEiJ_G0022509)	2010003K11Rik (MGP_CAROLIEiJ_G0022508) #8	Syt12 (MGP_CAROLIEiJ_G0022507) #9	MGP_CAROLIEiJ_G0022506 #10	Kdm2a (MGP_CAROLIEiJ_G0022505) #11	Grk2 (MGP_CAROLIEiJ_G0022504) #13	Ankrd13d (MGP_CAROLIEiJ_G0022503) #14	Ssh3 (MGP_CAROLIEiJ_G0022502) #15	Pold4 (MGP_CAROLIEiJ_G0022501) #17	Clcf1 (MGP_CAROLIEiJ_G0022500) #18	Rad9a (MGP_CAROLIEiJ_G0022499) #16	Ppp1ca (MGP_CAROLIEiJ_G0022498) #19	Tbc1d10c (MGP_CAROLIEiJ_G0022497) #20	Carns1 (MGP_CAROLIEiJ_G0022496) #21	Rps6kb2 (MGP_CAROLIEiJ_G0022495) #22	Ptprcap (MGP_CAROLIEiJ_G0022494) #23	Coro1b (MGP_CAROLIEiJ_G0022493) #24	Gpr152 (MGP_CAROLIEiJ_G0022492) #25	Cabp4 (MGP_CAROLIEiJ_G0022491) #26	Aip (MGP_CAROLIEiJ_G0022490) #28	Pitpnm1 (MGP_CAROLIEiJ_G0022489) #29	Cdk2ap2 (MGP_CAROLIEiJ_G0022488) #30	Cabp2 (MGP_CAROLIEiJ_G0022487) #31	Gstp3 (MGP_CAROLIEiJ_G0022486)	MGP_CAROLIEiJ_G0022485	MGP_CAROLIEiJ_G0022484	Ndufv1 (MGP_CAROLIEiJ_G0022483) #35	Doc2g (MGP_CAROLIEiJ_G0022482)	Nudt8 (MGP_CAROLIEiJ_G0022481) #36	Tbx10 (MGP_CAROLIEiJ_G0022480)
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0014006	Pcx (MGP_PahariEiJ_G0014005)	2010003K11Rik (MGP_PahariEiJ_G0014004) #8	Syt12 (MGP_PahariEiJ_G0014003) #9	MGP_PahariEiJ_G0014002 #10	Kdm2a (MGP_PahariEiJ_G0014001) #11	Grk2 (MGP_PahariEiJ_G0014000) #13	Ankrd13d (MGP_PahariEiJ_G0013999) #14	Ssh3 (MGP_PahariEiJ_G0013998) #15	Pold4 (MGP_PahariEiJ_G0013997) #17	Clcf1 (MGP_PahariEiJ_G0013996) #18	Rad9a (MGP_PahariEiJ_G0013995) #16	Ppp1ca (MGP_PahariEiJ_G0013994) #19	Tbc1d10c (MGP_PahariEiJ_G0013993) #20	Carns1 (MGP_PahariEiJ_G0013992) #21	Rps6kb2 (MGP_PahariEiJ_G0013991) #22	Ptprcap (MGP_PahariEiJ_G0013990) #23	MGP_PahariEiJ_G0013989 #24	Gpr152 (MGP_PahariEiJ_G0013988) #25	Cabp4 (MGP_PahariEiJ_G0013987) #26	Aip (MGP_PahariEiJ_G0013986) #28	Pitpnm1 (MGP_PahariEiJ_G0013985) #29	Cdk2ap2 (MGP_PahariEiJ_G0013984) #30	Cabp2 (MGP_PahariEiJ_G0013983) #31	Gstp3 (MGP_PahariEiJ_G0013982)	MGP_PahariEiJ_G0013981	Ndufv1 (MGP_PahariEiJ_G0013980) #35	Doc2g (MGP_PahariEiJ_G0013979)	Nudt8 (MGP_PahariEiJ_G0013978) #36	Tbx10 (MGP_PahariEiJ_G0013977)	Acy3 (MGP_PahariEiJ_G0013976)
Rat	MODERN SPECIES		Pc (ENSRNOG00000019372)	ENSRNOG00000066174	LOC689065 (ENSRNOG00000036641) #8	Syt12 (ENSRNOG00000019306) #9	Rhod (ENSRNOG00000019220) #10	Kdm2a (ENSRNOG00000019145) #11	Grk2 (ENSRNOG00000018985) #13	Ankrd13d (ENSRNOG00000028247) #14	Ssh3 (ENSRNOG00000018878) #15	Pold4 (ENSRNOG00000018765) #17	Clcf1 (ENSRNOG00000018752) #18	Rad9a (ENSRNOG00000018729) #16	Ppp1ca (ENSRNOG00000018708) #19	Tbc1d10c (ENSRNOG00000021510) #20	Carns1 (ENSRNOG00000018603) #21	Rps6kb2 (ENSRNOG00000021689) #22	Ptprcap (ENSRNOG00000021724) #23	Coro1b (ENSRNOG00000021828) #24	Gpr152 (ENSRNOG00000021912) #25	Cabp4 (ENSRNOG00000022044) #26	Tmem134 (ENSRNOG00000022153) #27	Aip (ENSRNOG00000022289) #28	Pitpnm1 (ENSRNOG00000018553) #29	Cdk2ap2 (ENSRNOG00000018391) #30	Cabp2 (ENSRNOG00000018339) #31	Gstp3 (ENSRNOG00000018287)	Gstp1 (ENSRNOG00000018237)	Ndufv1 (ENSRNOG00000018117) #35	Doc2g (ENSRNOG00000018029)	Nudt8 (ENSRNOG00000017955) #36	Acy3 (ENSRNOG00000017901)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1818	Pcx (ENSNGAG00000012737)	Lrfn4 (ENSNGAG00000008243) #7	2010003K11Rik (ENSNGAG00000011755) #8	Syt12 (ENSNGAG00000014179) #9	Rhod (ENSNGAG00000014992) #10	Kdm2a (ENSNGAG00000019841) #11	Grk2 (ENSNGAG00000012384) #13	Ankrd13d (ENSNGAG00000020140) #14	Ssh3 (ENSNGAG00000000431) #15	Pold4 (ENSNGAG00000010450) #17	Clcf1 (ENSNGAG00000013064) #18	Rad9a (ENSNGAG00000018044) #16	ENSNGAG00000015301 #19	ENSNGAG00000020645 #20	Carns1 (ENSNGAG00000011168) #21	Rps6kb2 (ENSNGAG00000005545) #22	Ptprcap (ENSNGAG00000017126) #23	Coro1b (ENSNGAG00000019821) #24	Gpr152 (ENSNGAG00000008380) #25	Cabp4 (ENSNGAG00000015044) #26	Tmem134 (ENSNGAG00000017238) #27	Aip (ENSNGAG00000020330) #28	Pitpnm1 (ENSNGAG00000020386) #29	Cdk2ap2 (ENSNGAG00000007775) #30	Cabp2 (ENSNGAG00000014616) #31	Gstp3 (ENSNGAG00000000204)	ENSNGAG00000014047	Ndufv1 (ENSNGAG00000013048) #35
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	87	ENSJJAG00000015982	ENSJJAG00000010414	ENSJJAG00000021580	ENSJJAG00000017306	Tmem123 (ENSJJAG00000014178)	Mmp7 (ENSJJAG00000009326)	Mmp20 (ENSJJAG00000020407)	Mmp27 (ENSJJAG00000011497)	Mmp8 (ENSJJAG00000021566)	ENSJJAG00000020496	ENSJJAG00000010013	Mmp12 (ENSJJAG00000019762)	Mmp13 (ENSJJAG00000013818)	Dcun1d5 (ENSJJAG00000004999)	Dync2h1 (ENSJJAG00000000557)	ENSJJAG00000016889 #22	Ddi1 (ENSJJAG00000000750)	Pdgfd (ENSJJAG00000020441)
Lesser Egyptian jerboa	MODERN SPECIES	138						ENSJJAG00000018862	Wrn (ENSJJAG00000015655)	Purg (ENSJJAG00000013136)	Tex15 (ENSJJAG00000013617)	ENSJJAG00000012832	ENSJJAG00000012013	Ubxn8 (ENSJJAG00000011389)	Gsr (ENSJJAG00000018464)	Gtf2e2 (ENSJJAG00000016660)	Rbpms (ENSJJAG00000014024)	ENSJJAG00000011948 #22	ENSJJAG00000010922	Dctn6 (ENSJJAG00000009554)	Mboat4 (ENSJJAG00000019709)	ENSJJAG00000018340	Saraf (ENSJJAG00000017570)	ENSJJAG00000016758	ENSJJAG00000016531	ENSJJAG00000013189	Dusp4 (ENSJJAG00000015845)	Tnks (ENSJJAG00000010315)	ENSJJAG00000000167	ENSJJAG00000022750	Ppp1r3b (ENSJJAG00000012925)	Eri1 (ENSJJAG00000015740)	Mfhas1 (ENSJJAG00000015209)
Lesser Egyptian jerboa	MODERN SPECIES	60	Pcx (ENSJJAG00000017866)	Lrfn4 (ENSJJAG00000023056) #7	2010003K11Rik (ENSJJAG00000024072) #8	Syt12 (ENSJJAG00000016544) #9	Rhod (ENSJJAG00000017719) #10	Kdm2a (ENSJJAG00000008785) #11	Grk2 (ENSJJAG00000007615) #13	Ankrd13d (ENSJJAG00000020972) #14	Ssh3 (ENSJJAG00000013515) #15	Pold4 (ENSJJAG00000015752) #17	Clcf1 (ENSJJAG00000019178) #18	Rad9a (ENSJJAG00000013292) #16	Ppp1ca (ENSJJAG00000010290) #19	Tbc1d10c (ENSJJAG00000004622) #20	Carns1 (ENSJJAG00000018930) #21	ENSJJAG00000016182 #22	ENSJJAG00000001838 #24	Gpr152 (ENSJJAG00000022981) #25	Cabp4 (ENSJJAG00000011101) #26	Tmem134 (ENSJJAG00000016692) #27	Aip (ENSJJAG00000015345) #28	ENSJJAG00000003374 #29	ENSJJAG00000013896 #30	Cabp2 (ENSJJAG00000018419) #31	Gstp3 (ENSJJAG00000024233)	ENSJJAG00000023512	Ndufv1 (ENSJJAG00000017874) #35	Doc2g (ENSJJAG00000021341)	Nudt8 (ENSJJAG00000023328) #36	Tbx10 (ENSJJAG00000022634)	Acy3 (ENSJJAG00000019193)
Kangaroo rat	MODERN SPECIES	373	Lrfn4 (ENSDORG00000028933) #7	Pcx (ENSDORG00000011749)	2010003K11Rik (ENSDORG00000027059) #8	Syt12 (ENSDORG00000005678) #9	ENSDORG00000001980 #10	Kdm2a (ENSDORG00000011836) #11	Grk2 (ENSDORG00000010940) #13	Ankrd13d (ENSDORG00000010942) #14	Ssh3 (ENSDORG00000010943) #15	Pold4 (ENSDORG00000023882) #17	Clcf1 (ENSDORG00000015120) #18	Rad9a (ENSDORG00000012297) #16	ENSDORG00000012300 #19	Tbc1d10c (ENSDORG00000029199) #20	ENSDORG00000014541	Rps6kb2 (ENSDORG00000014540) #22	Ptprcap (ENSDORG00000014538) #23	ENSDORG00000014537 #24	Gpr152 (ENSDORG00000028173) #25	Cabp4 (ENSDORG00000014536) #26	Tmem134 (ENSDORG00000014535) #27	Aip (ENSDORG00000014533) #28	ENSDORG00000014531 #29	Cdk2ap2 (ENSDORG00000025739) #30	Cabp2 (ENSDORG00000014527) #31	Gstp3 (ENSDORG00000024771)	ENSDORG00000002063	Ndufv1 (ENSDORG00000010074) #35	Doc2g (ENSDORG00000026896)	ENSDORG00000010072	Tbx10 (ENSDORG00000010070)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435 #33	ENSGT00390000010641 #35	ENSGT00940000163889	ENSGT00940000163374	ENSGT01100000264273
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Hedgehog	MODERN SPECIES	7032																RPS6KB2 (ENSEEUG00000014743) #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000163435.e.a #33	ENSGT00390000010641 #35	ENSGT00940000162875
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000163435.e.a #33	ENSGT00390000010641 #35	ENSGT00940000162875
Suina	ANCESTRAL SPECIES	14	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.e.a #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Chacoan peccary	MODERN SPECIES	921	LRFN4 (ENSCWAG00000008478) #7	PC (ENSCWAG00000008265)	C11orf86 (ENSCWAG00000008199) #8	SYT12 (ENSCWAG00000008167) #9	RHOD (ENSCWAG00000008096) #10	KDM2A (ENSCWAG00000007851) #11	GRK2 (ENSCWAG00000007774) #13	ANKRD13D (ENSCWAG00000007724) #14	ENSCWAG00000007703 #15	POLD4 (ENSCWAG00000007670) #17	CLCF1 (ENSCWAG00000007645) #18	RAD9A (ENSCWAG00000007635) #16	ENSCWAG00000007570 #19	TBC1D10C (ENSCWAG00000007510) #20	CARNS1 (ENSCWAG00000007375) #21	RPS6KB2 (ENSCWAG00000007341) #22	PTPRCAP (ENSCWAG00000007330) #23	CORO1B (ENSCWAG00000007304) #24	GPR152 (ENSCWAG00000007292) #25	CABP4 (ENSCWAG00000007263) #26	TMEM134 (ENSCWAG00000007220) #27	AIP (ENSCWAG00000007192) #28	PITPNM1 (ENSCWAG00000007166) #29	CDK2AP2 (ENSCWAG00000007150) #30	CABP2 (ENSCWAG00000007074) #31	ENSCWAG00000007049	ENSCWAG00000007036 #33	NDUFV1 (ENSCWAG00000006939) #35	ENSCWAG00000006879	ENSCWAG00000006858 #36	TBX10 (ENSCWAG00000006811) #37
Pig	MODERN SPECIES	10	LRFN4 (ENSSSCG00000039360) #7	PC (ENSSSCG00000012926)	C11orf86 (ENSSSCG00000040729) #8	SYT12 (ENSSSCG00000024837) #9	RHOD (ENSSSCG00000022726) #10	KDM2A (ENSSSCG00000029637) #11	GRK2 (ENSSSCG00000012918) #13	ANKRD13D (ENSSSCG00000012917) #14	SSH3 (ENSSSCG00000027956) #15	POLD4 (ENSSSCG00000012916) #17	CLCF1 (ENSSSCG00000012915) #18	RAD9A (ENSSSCG00000012914) #16	PPP1CA (ENSSSCG00000012913) #19	TBC1D10C (ENSSSCG00000012912) #20	CARNS1 (ENSSSCG00000012911) #21	RPS6KB2 (ENSSSCG00000012910) #22	PTPRCAP (ENSSSCG00000012909) #23	CORO1B (ENSSSCG00000012920) #24	GPR152 (ENSSSCG00000059139) #25	CABP4 (ENSSSCG00000012906) #26	TMEM134 (ENSSSCG00000012905) #27	AIP (ENSSSCG00000062981) #28	PITPNM1 (ENSSSCG00000012903) #29	CDK2AP2 (ENSSSCG00000012902) #30	CABP2 (ENSSSCG00000020764) #31	ENSSSCG00000060071	ENSSSCG00000032003 #33	NDUFV1 (ENSSSCG00000012896) #35	ENSSSCG00000052603	ENSSSCG00000035645 #36	TBX10 (ENSSSCG00000034410) #37
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000163435.e.a #33	ENSGT00390000010641 #35	ENSGT00940000162875
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00990000213493	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00990000213493	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Dolphin	MODERN SPECIES	1942												RAD9A (ENSTTRG00000013208) #16	PPP1CA (ENSTTRG00000013233) #19	TBC1D10C (ENSTTRG00000013242) #20	ENSTTRG00000013249 #21	RPS6KB2 (ENSTTRG00000013251) #22	PTPRCAP (ENSTTRG00000013255) #23	CORO1B (ENSTTRG00000013257) #24	GPR152 (ENSTTRG00000013260) #25	CABP4 (ENSTTRG00000013261) #26	TMEM134 (ENSTTRG00000013264) #27	AIP (ENSTTRG00000013265) #28	PITPNM1 (ENSTTRG00000013267) #29	CDK2AP2 (ENSTTRG00000013268) #30	CABP2 (ENSTTRG00000013269) #31
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00990000213493	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Vaquita	MODERN SPECIES	19	LRFN4 (ENSPSNG00000009462) #7	C11orf86 (ENSPSNG00000009497) #8	SYT12 (ENSPSNG00000009530) #9	RHOD (ENSPSNG00000009571) #10	KDM2A (ENSPSNG00000009654) #11	ENSPSNG00000009745	GRK2 (ENSPSNG00000009809) #13	ANKRD13D (ENSPSNG00000009916) #14	SSH3 (ENSPSNG00000010029) #15	POLD4 (ENSPSNG00000010304) #17	CLCF1 (ENSPSNG00000010372) #18	RAD9A (ENSPSNG00000010444) #16	PPP1CA (ENSPSNG00000010502) #19	TBC1D10C (ENSPSNG00000010641) #20	CARNS1 (ENSPSNG00000010738) #21	RPS6KB2 (ENSPSNG00000010990) #22	PTPRCAP (ENSPSNG00000011039) #23	CORO1B (ENSPSNG00000011096) #24	GPR152 (ENSPSNG00000011149) #25	CABP4 (ENSPSNG00000011189) #26	TMEM134 (ENSPSNG00000011362) #27	AIP (ENSPSNG00000011463) #28	PITPNM1 (ENSPSNG00000011535) #29	CDK2AP2 (ENSPSNG00000011634) #30	CABP2 (ENSPSNG00000011691) #31	ENSPSNG00000011890	ENSPSNG00000012038 #33	NDUFV1 (ENSPSNG00000012099) #35	ENSPSNG00000012192 #36	TBX10 (ENSPSNG00000012218) #37	ALDH3B2 (ENSPSNG00000012373)
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00990000213493	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Beluga whale	MODERN SPECIES	7	CUNH11orf86 (ENSDLEG00000000442) #8	SYT12 (ENSDLEG00000000409) #9	RHOD (ENSDLEG00000000384) #10	ENSDLEG00000000367	KDM2A (ENSDLEG00000000327) #11	GRK2 (ENSDLEG00000000303) #13	ANKRD13D (ENSDLEG00000000230) #14	SSH3 (ENSDLEG00000000182) #15	ENSDLEG00000000120 #17	CLCF1 (ENSDLEG00000000088) #18	RAD9A (ENSDLEG00000000070) #16	PPP1CA (ENSDLEG00000000041) #19	TBC1D10C (ENSDLEG00000007507) #20	CARNS1 (ENSDLEG00000007504) #21	PTPRCAP (ENSDLEG00000007502) #23	RPS6KB2 (ENSDLEG00000007496) #22	CORO1B (ENSDLEG00000007489) #24	GPR152 (ENSDLEG00000007487) #25	CABP4 (ENSDLEG00000007479) #26	TMEM134 (ENSDLEG00000007472) #27	AIP (ENSDLEG00000007462) #28	PITPNM1 (ENSDLEG00000007424) #29	CDK2AP2 (ENSDLEG00000007407) #30	CABP2 (ENSDLEG00000007398) #31	ENSDLEG00000007392	ENSDLEG00000007379 #33	NDUFV1 (ENSDLEG00000007370) #35	ENSDLEG00000007368	ENSDLEG00000007357 #36	TBX10 (ENSDLEG00000007345) #37	ENSDLEG00000007341
Narwhal	MODERN SPECIES	314	LRFN4 (ENSMMNG00015018834) #7	C11orf86 (ENSMMNG00015018854) #8	SYT12 (ENSMMNG00015018879) #9	RHOD (ENSMMNG00015018920) #10	KDM2A (ENSMMNG00015018962) #11	ENSMMNG00015019015	GRK2 (ENSMMNG00015019044) #13	ANKRD13D (ENSMMNG00015019115) #14	SSH3 (ENSMMNG00015019247) #15	POLD4 (ENSMMNG00015019361) #17	CLCF1 (ENSMMNG00015019402) #18	RAD9A (ENSMMNG00015019448) #16	PPP1CA (ENSMMNG00015019512) #19	TBC1D10C (ENSMMNG00015019565) #20	CARNS1 (ENSMMNG00015019617) #21	RPS6KB2 (ENSMMNG00015019710) #22	PTPRCAP (ENSMMNG00015019739) #23	CORO1B (ENSMMNG00015019765) #24	GPR152 (ENSMMNG00015019803) #25	CABP4 (ENSMMNG00015019821) #26	TMEM134 (ENSMMNG00015019872) #27	AIP (ENSMMNG00015019982) #28	PITPNM1 (ENSMMNG00015020033) #29	CDK2AP2 (ENSMMNG00015020090) #30	CABP2 (ENSMMNG00015020136) #31	ENSMMNG00015020200	ENSMMNG00015020229 #33	NDUFV1 (ENSMMNG00015020258) #35	ENSMMNG00015020291	ENSMMNG00015020305 #36	TBX10 (ENSMMNG00015020328) #37
Sperm whale	MODERN SPECIES	97												RAD9A (ENSPCTG00005022584) #16	PPP1CA (ENSPCTG00005022585) #19	TBC1D10C (ENSPCTG00005022589) #20	CARNS1 (ENSPCTG00005022594) #21	RPS6KB2 (ENSPCTG00005022597) #22	PTPRCAP (ENSPCTG00005022598) #23	CORO1B (ENSPCTG00005022599) #24	GPR152 (ENSPCTG00005022600) #25	CABP4 (ENSPCTG00005022601) #26	TMEM134 (ENSPCTG00005022602) #27	AIP (ENSPCTG00005022604) #28	PITPNM1 (ENSPCTG00005022605) #29	CDK2AP2 (ENSPCTG00005022607) #30	CABP2 (ENSPCTG00005022608) #31	ENSPCTG00005022609
Blue whale	MODERN SPECIES	19	PC (ENSBMSG00010011036)	LRFN4 (ENSBMSG00010011109) #7	C11orf86 (ENSBMSG00010011115) #8	SYT12 (ENSBMSG00010011123) #9	RHOD (ENSBMSG00010011143) #10	KDM2A (ENSBMSG00010004384) #11	GRK2 (ENSBMSG00010004418) #13	ANKRD13D (ENSBMSG00010004465) #14	SSH3 (ENSBMSG00010004481) #15	POLD4 (ENSBMSG00010004525) #17	CLCF1 (ENSBMSG00010004545) #18	RAD9A (ENSBMSG00010004558) #16	PPP1CA (ENSBMSG00010004585) #19	TBC1D10C (ENSBMSG00010004620) #20	CARNS1 (ENSBMSG00010004657) #21	RPS6KB2 (ENSBMSG00010004688) #22	PTPRCAP (ENSBMSG00010004698) #23	CORO1B (ENSBMSG00010004704) #24	CABP4 (ENSBMSG00010004718) #26	TMEM134 (ENSBMSG00010004736) #27	AIP (ENSBMSG00010004756) #28	PITPNM1 (ENSBMSG00010004775) #29	CABP2 (ENSBMSG00010004797) #31	ENSBMSG00010004811	ENSBMSG00010004827 #33	NDUFV1 (ENSBMSG00010004841) #35	ENSBMSG00010004866	ENSBMSG00010004879 #36	TBX10 (ENSBMSG00010004883) #37	ALDH3B2 (ENSBMSG00010004892)	UNC93B1 (ENSBMSG00010004898)
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Bovinae	ANCESTRAL SPECIES	24	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Bos	ANCESTRAL SPECIES	11	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Bos_b	ANCESTRAL SPECIES	10	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00990000213493	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000154816.a.a #37
Cow	MODERN SPECIES	21	PC (ENSBTAG00000019700)	LRFN4 (ENSBTAG00000037404) #7	C29H11orf86 (ENSBTAG00000022246) #8	SYT12 (ENSBTAG00000003369) #9	RHOD (ENSBTAG00000020600) #10	KDM2A (ENSBTAG00000044032) #11	GRK2 (ENSBTAG00000005832) #13	ANKRD13D (ENSBTAG00000012200) #14	SSH3 (ENSBTAG00000031590) #15	POLD4 (ENSBTAG00000017951) #17	CLCF1 (ENSBTAG00000046110) #18	RAD9A (ENSBTAG00000012141) #16	PPP1CA (ENSBTAG00000012146) #19	TBC1D10C (ENSBTAG00000013133) #20	CARNS1 (ENSBTAG00000017690) #21	RPS6KB2 (ENSBTAG00000009175) #22	PTPRCAP (ENSBTAG00000004782) #23	CORO1B (ENSBTAG00000004783) #24	GPR152 (ENSBTAG00000046728) #25	CABP4 (ENSBTAG00000004785) #26	TMEM134 (ENSBTAG00000004786) #27	AIP (ENSBTAG00000010478) #28	PITPNM1 (ENSBTAG00000010482) #29	CDK2AP2 (ENSBTAG00000002121) #30	CABP2 (ENSBTAG00000022209) #31	GSTP1 (ENSBTAG00000003548)	GSTP1 (ENSBTAG00000051210) #33	NDUFV1 (ENSBTAG00000021776) #35	DOC2G (ENSBTAG00000021777)	TBX10 (ENSBTAG00000011816) #37	ENSBTAG00000012054
Hybrid Bos Indicus	MODERN SPECIES	21	PC (ENSBIXG00005003262)	C11orf86 (ENSBIXG00005003292) #8	SYT12 (ENSBIXG00005020079) #9	RHOD (ENSBIXG00005007831) #10	ENSBIXG00005006820	KDM2A (ENSBIXG00005003324) #11	GRK2 (ENSBIXG00005003344) #13	ANKRD13D (ENSBIXG00005020219) #14	SSH3 (ENSBIXG00005020249) #15	ENSBIXG00005007206 #17	ENSBIXG00005005868 #18	RAD9A (ENSBIXG00005020343) #16	PPP1CA (ENSBIXG00005003445) #19	TBC1D10C (ENSBIXG00005020430) #20	CARNS1 (ENSBIXG00005020507) #21	RPS6KB2 (ENSBIXG00005007154) #22	PTPRCAP (ENSBIXG00005020556) #23	CORO1B (ENSBIXG00005020573) #24	GPR152 (ENSBIXG00005007302) #25	CABP4 (ENSBIXG00005003484) #26	TMEM134 (ENSBIXG00005003498) #27	AIP (ENSBIXG00005020736) #28	PITPNM1 (ENSBIXG00005003531) #29	ENSBIXG00005020965 #30	CABP2 (ENSBIXG00005021047) #31	ENSBIXG00005021109 #33	ENSBIXG00005021129	NDUFV1 (ENSBIXG00005021193) #35	ENSBIXG00005007675	TBX10 (ENSBIXG00005021245) #37	ENSBIXG00005021275
Bos_a	ANCESTRAL SPECIES	34	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Wild yak	MODERN SPECIES	1533	PC (ENSBMUG00000021167)	LRFN4 (ENSBMUG00000021186) #7	C11orf86 (ENSBMUG00000021198) #8	SYT12 (ENSBMUG00000021201) #9	RHOD (ENSBMUG00000021222) #10	KDM2A (ENSBMUG00000021299) #11	GRK2 (ENSBMUG00000021371) #13	ANKRD13D (ENSBMUG00000021387) #14	SSH3 (ENSBMUG00000021417) #15	POLD4 (ENSBMUG00000021428) #17	CLCF1 (ENSBMUG00000021437) #18	RAD9A (ENSBMUG00000021453) #16	PPP1CA (ENSBMUG00000021462) #19	TBC1D10C (ENSBMUG00000021479) #20	CARNS1 (ENSBMUG00000021512) #21	RPS6KB2 (ENSBMUG00000021523) #22	ENSBMUG00000021528 #23	CORO1B (ENSBMUG00000021562) #24	GPR152 (ENSBMUG00000021581) #25	CABP4 (ENSBMUG00000021589) #26	ENSBMUG00000021649 #27	AIP (ENSBMUG00000021692) #28	PITPNM1 (ENSBMUG00000021743) #29	CDK2AP2 (ENSBMUG00000021758) #30	CABP2 (ENSBMUG00000021781) #31	ENSBMUG00000021831 #33	NDUFV1 (ENSBMUG00000021947) #35	ENSBMUG00000021996	ENSBMUG00000022014 #36	TBX10 (ENSBMUG00000022029) #37	ALDH3B2 (ENSBMUG00000022044)
American bison	MODERN SPECIES	3011	LRFN4 (ENSBBBG00000011017) #7	PC (ENSBBBG00000007348)	C11orf86 (ENSBBBG00000001988) #8	SYT12 (ENSBBBG00000007588) #9	RHOD (ENSBBBG00000011071) #10	KDM2A (ENSBBBG00000011108) #11	GRK2 (ENSBBBG00000011178) #13	ANKRD13D (ENSBBBG00000011220) #14	SSH3 (ENSBBBG00000011241) #15	POLD4 (ENSBBBG00000011249) #17	CLCF1 (ENSBBBG00000011254) #18	RAD9A (ENSBBBG00000011271) #16	PPP1CA (ENSBBBG00000002073) #19	TBC1D10C (ENSBBBG00000002019) #20	ENSBBBG00000011410	RPS6KB2 (ENSBBBG00000011423) #22	PTPRCAP (ENSBBBG00000011426) #23	CORO1B (ENSBBBG00000011439) #24	GPR152 (ENSBBBG00000008097) #25	CABP4 (ENSBBBG00000011461) #26	TMEM134 (ENSBBBG00000011488) #27	AIP (ENSBBBG00000011499) #28	PITPNM1 (ENSBBBG00000011566) #29	CDK2AP2 (ENSBBBG00000011578) #30	CABP2 (ENSBBBG00000002134) #31	ENSBBBG00000011647	ENSBBBG00000011688 #33	NDUFV1 (ENSBBBG00000006837) #35	ENSBBBG00000002170 #36	TBX10 (ENSBBBG00000011733) #37	ALDH3B2 (ENSBBBG00000011745)
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000163374.g
Rambouillet Sheep	MODERN SPECIES	13	PC (ENSOARG00020009705)	LRFN4 (ENSOARG00020009872) #7	C11orf86 (ENSOARG00020009905) #8	SYT12 (ENSOARG00020009939) #9	RHOD (ENSOARG00020010142) #10	KDM2A (ENSOARG00020010294) #11	GRK2 (ENSOARG00020010768) #13	ANKRD13D (ENSOARG00020011036) #14	ENSOARG00020011311 #15	POLD4 (ENSOARG00020011352) #17	CLCF1 (ENSOARG00020011455) #18	RAD9A (ENSOARG00020011511) #16	PPP1CA (ENSOARG00020011637) #19	TBC1D10C (ENSOARG00020011852) #20	ENSOARG00020011906	RPS6KB2 (ENSOARG00020012258) #22	PTPRCAP (ENSOARG00020012324) #23	CORO1B (ENSOARG00020012381) #24	GPR152 (ENSOARG00020012440) #25	CABP4 (ENSOARG00020012475) #26	TMEM134 (ENSOARG00020012668) #27	AIP (ENSOARG00020012864) #28	PITPNM1 (ENSOARG00020012916) #29	CDK2AP2 (ENSOARG00020013021) #30	CABP2 (ENSOARG00020013080) #31	ENSOARG00020013368	ENSOARG00020013487 #33	NDUFV1 (ENSOARG00020013585) #35	ENSOARG00020013607	NUDT8 (ENSOARG00020013703)	TBX10 (ENSOARG00020013801) #37
Goat	MODERN SPECIES	21	KCNK4 (ENSCHIG00000026272)	GPR137 (ENSCHIG00000017382)	BAD (ENSCHIG00000015400)	PLCB3 (ENSCHIG00000019547)	ENSCHIG00000019416	ENSCHIG00000026323	VEGFB (ENSCHIG00000024766)	DNAJC4 (ENSCHIG00000023580)	NUDT22 (ENSCHIG00000016120)	TRPT1 (ENSCHIG00000021308)	FERMT3 (ENSCHIG00000024155)	ENSCHIG00000010802	FLRT1 (ENSCHIG00000004163)	ENSCHIG00000024098	PTPRCAP (ENSCHIG00000009500) #23	RPS6KB2 (ENSCHIG00000009327) #22	CORO1B (ENSCHIG00000017528) #24	MACROD1 (ENSCHIG00000019953)	ENSCHIG00000014256	COX8A (ENSCHIG00000024147)	NAA40 (ENSCHIG00000010908)	RCOR2 (ENSCHIG00000015292)	MARK2 (ENSCHIG00000019875)	SPINDOC (ENSCHIG00000009623)	ZFTA (ENSCHIG00000022847)	ENSCHIG00000014185	ATL3 (ENSCHIG00000022420)	ENSCHIG00000024459	ENSCHIG00000014874	ENSCHIG00000016166	ENSCHIG00000003540
Siberian musk deer	MODERN SPECIES	1226	LRFN4 (ENSMMSG00000024045) #7	PC (ENSMMSG00000024035)	C11orf86 (ENSMMSG00000024029) #8	SYT12 (ENSMMSG00000024019) #9	RHOD (ENSMMSG00000024003) #10	KDM2A (ENSMMSG00000023992) #11	GRK2 (ENSMMSG00000023970) #13	ANKRD13D (ENSMMSG00000023954) #14	SSH3 (ENSMMSG00000023947) #15	POLD4 (ENSMMSG00000023941) #17	CLCF1 (ENSMMSG00000023932) #18	RAD9A (ENSMMSG00000023915) #16	PPP1CA (ENSMMSG00000023894) #19	TBC1D10C (ENSMMSG00000023882) #20	CARNS1 (ENSMMSG00000023862) #21	RPS6KB2 (ENSMMSG00000023844) #22	PTPRCAP (ENSMMSG00000023838) #23	CORO1B (ENSMMSG00000023829) #24	GPR152 (ENSMMSG00000023822) #25	CABP4 (ENSMMSG00000023807) #26	ENSMMSG00000023795 #27	AIP (ENSMMSG00000023787) #28	PITPNM1 (ENSMMSG00000023779) #29	CDK2AP2 (ENSMMSG00000023774) #30	CABP2 (ENSMMSG00000023763) #31	ENSMMSG00000023744	ENSMMSG00000023730 #33	NDUFV1 (ENSMMSG00000023713) #35	ENSMMSG00000023708	ENSMMSG00000023706	ENSMMSG00000023700 #36
Yarkand deer	MODERN SPECIES	11	ENSCHYG00000002374	C11orf86 (ENSCHYG00000002389) #8	SYT12 (ENSCHYG00000002401) #9	ENSCHYG00000002427 #10	KDM2A (ENSCHYG00000002464) #11	GRK2 (ENSCHYG00000002521) #13	ANKRD13D (ENSCHYG00000002568) #14	SSH3 (ENSCHYG00000002620) #15	ENSCHYG00000002718	ENSCHYG00000002737 #17	CLCF1 (ENSCHYG00000002752) #18	RAD9A (ENSCHYG00000002779) #16	PPP1CA (ENSCHYG00000002815) #19	TBC1D10C (ENSCHYG00000002870) #20	CARNS1 (ENSCHYG00000002924) #21	RPS6KB2 (ENSCHYG00000002967) #22	PTPRCAP (ENSCHYG00000002984) #23	CORO1B (ENSCHYG00000002991) #24	GPR152 (ENSCHYG00000003011) #25	CABP4 (ENSCHYG00000003019) #26	TMEM134 (ENSCHYG00000003047) #27	AIP (ENSCHYG00000003119) #28	PITPNM1 (ENSCHYG00000003166) #29	CDK2AP2 (ENSCHYG00000003302) #30	CABP2 (ENSCHYG00000003335) #31	ENSCHYG00000003387	ENSCHYG00000003427	NDUFV1 (ENSCHYG00000003440) #35	ENSCHYG00000003458	ENSCHYG00000003477 #36	TBX10 (ENSCHYG00000003486) #37
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.e.a #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000163374.g	ENSGT00940000155904.e.b
Arabian camel	MODERN SPECIES	1	LRFN4 (ENSCDRG00005013734) #7	C11orf86 (ENSCDRG00005013704) #8	PC (ENSCDRG00005013184)	SYT12 (ENSCDRG00005013137) #9	RHOD (ENSCDRG00005013055) #10	KDM2A (ENSCDRG00005012715) #11	GRK2 (ENSCDRG00005012468) #13	ANKRD13D (ENSCDRG00005012263) #14	SSH3 (ENSCDRG00005012079) #15	POLD4 (ENSCDRG00005011964) #17	CLCF1 (ENSCDRG00005011923) #18	RAD9A (ENSCDRG00005011885) #16	PPP1CA (ENSCDRG00005011737) #19	TBC1D10C (ENSCDRG00005011591) #20	CARNS1 (ENSCDRG00005011445) #21	RPS6KB2 (ENSCDRG00005011373) #22	CORO1B (ENSCDRG00005011291) #24	GPR152 (ENSCDRG00005011272) #25	CABP4 (ENSCDRG00005011171) #26	ENSCDRG00005010854 #27	AIP (ENSCDRG00005010788) #28	PITPNM1 (ENSCDRG00005010686) #29	CDK2AP2 (ENSCDRG00005010661) #30	CABP2 (ENSCDRG00005010465) #31	ENSCDRG00005010431	GSTP1-1 (ENSCDRG00005010333) #33	NDUFV1 (ENSCDRG00005010077) #35	ENSCDRG00005010025	NUDT8 (ENSCDRG00005009988)	ENSCDRG00005009949	ALDH3B2 (ENSCDRG00005009823)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875
Carnivora	ANCESTRAL SPECIES	7	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Caniformia	ANCESTRAL SPECIES	21	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Ursidae	ANCESTRAL SPECIES	2	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468.b #26	ENSGT00950000185478	ENSGT00940000167974.a	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125.b	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36
Ursus	ANCESTRAL SPECIES	21	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468.b #26	ENSGT00390000011766 #27	ENSGT00940000167974.a	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125.b.b.b	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
American black bear	MODERN SPECIES	686					KDM2A (ENSUAMG00000005867) #11	GRK2 (ENSUAMG00000005864) #13	ENSUAMG00000005862 #14	ENSUAMG00000005860 #14	SSH3 (ENSUAMG00000005856) #15	ENSUAMG00000005854 #17	CLCF1 (ENSUAMG00000005852) #18	ENSUAMG00000005849 #16	ENSUAMG00000005846 #19	TBC1D10C (ENSUAMG00000005844) #20	CARNS1 (ENSUAMG00000005842) #21	RPS6KB2 (ENSUAMG00000005838) #22	CORO1B (ENSUAMG00000005827) #24	GPR152 (ENSUAMG00000005821) #25	CABP4 (ENSUAMG00000005819) #26	TMEM134 (ENSUAMG00000005817) #27	ENSUAMG00000005815	AIP (ENSUAMG00000005812) #28	PITPNM1 (ENSUAMG00000005674) #29	CDK2AP2 (ENSUAMG00000005659) #30	CABP2 (ENSUAMG00000005653) #31	ENSUAMG00000005646
Polar bear	MODERN SPECIES	328	RCE1 (ENSUMAG00000011874)	PC (ENSUMAG00000011905)	LRFN4 (ENSUMAG00000011918) #7	C11orf86 (ENSUMAG00000011922) #8	SYT12 (ENSUMAG00000011928) #9	RHOD (ENSUMAG00000011937) #10	KDM2A (ENSUMAG00000011947) #11	GRK2 (ENSUMAG00000011985) #13	ANKRD13D (ENSUMAG00000012336) #14	SSH3 (ENSUMAG00000012376) #15	POLD4 (ENSUMAG00000012424) #17	CLCF1 (ENSUMAG00000012426) #18	RAD9A (ENSUMAG00000012428) #16	PPP1CA (ENSUMAG00000012448) #19	TBC1D10C (ENSUMAG00000012480) #20	RPS6KB2 (ENSUMAG00000012544) #22	CORO1B (ENSUMAG00000012896) #24	CABP4 (ENSUMAG00000012943) #26	ENSUMAG00000012948	AIP (ENSUMAG00000012949) #28	PITPNM1 (ENSUMAG00000012967) #29	CDK2AP2 (ENSUMAG00000013035) #30	CABP2 (ENSUMAG00000013041) #31	ENSUMAG00000013046	ENSUMAG00000013053 #33	NDUFV1 (ENSUMAG00000013061) #35	ENSUMAG00000013065	NUDT8 (ENSUMAG00000013078)	ENSUMAG00000013092	ENSUMAG00000013104	UNC93B1 (ENSUMAG00000013118)
Giant Panda	MODERN SPECIES	7	PC (ENSAMEG00000010752)	LRFN4 (ENSAMEG00000024850) #7	C11orf86 (ENSAMEG00000010744) #8	SYT12 (ENSAMEG00000010734) #9	RHOD (ENSAMEG00000025899) #10	KDM2A (ENSAMEG00000000531) #11	GRK2 (ENSAMEG00000000597) #13	ANKRD13D (ENSAMEG00000000669) #14	SSH3 (ENSAMEG00000000713) #15	RAD9A (ENSAMEG00000000743) #16	POLD4 (ENSAMEG00000000732) #17	CLCF1 (ENSAMEG00000000739) #18	PPP1CA (ENSAMEG00000000758) #19	TBC1D10C (ENSAMEG00000000778) #20	ENSAMEG00000000816	RPS6KB2 (ENSAMEG00000000822) #22	PTPRCAP (ENSAMEG00000000855) #23	CORO1B (ENSAMEG00000000857) #24	GPR152 (ENSAMEG00000000918) #25	CABP4 (ENSAMEG00000000919) #26	ENSAMEG00000026647	ENSAMEG00000028957	AIP (ENSAMEG00000000937) #28	PITPNM1 (ENSAMEG00000000948) #29	CDK2AP2 (ENSAMEG00000001002) #30	CABP2 (ENSAMEG00000001006) #31	ENSAMEG00000001020 #33	NDUFV1 (ENSAMEG00000001049) #35	ENSAMEG00000001078	ENSAMEG00000027070 #36	TBX10 (ENSAMEG00000001098) #37
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
American mink	MODERN SPECIES	104	RCE1 (ENSNVIG00000013666)	PC (ENSNVIG00000013613)	C11orf86 (ENSNVIG00000013594) #8	SYT12 (ENSNVIG00000013581) #9	RHOD (ENSNVIG00000013566) #10	KDM2A (ENSNVIG00000013530) #11	ENSNVIG00000013483 #13	ANKRD13D (ENSNVIG00000013469) #14	SSH3 (ENSNVIG00000013393) #15	POLD4 (ENSNVIG00000013376) #17	CLCF1 (ENSNVIG00000013368) #18	RAD9A (ENSNVIG00000013356) #16	ENSNVIG00000013346 #19	TBC1D10C (ENSNVIG00000013336) #20	CARNS1 (ENSNVIG00000013255) #21	RPS6KB2 (ENSNVIG00000013220) #22	PTPRCAP (ENSNVIG00000013201) #23	CORO1B (ENSNVIG00000013189) #24	GPR152 (ENSNVIG00000013164) #25	CABP4 (ENSNVIG00000013152) #26	TMEM134 (ENSNVIG00000013113) #27	AIP (ENSNVIG00000013080) #28	PITPNM1 (ENSNVIG00000012984) #29	CDK2AP2 (ENSNVIG00000012971) #30	CABP2 (ENSNVIG00000012930) #31	ENSNVIG00000012900	ENSNVIG00000012875 #33	NDUFV1 (ENSNVIG00000012828) #35	ENSNVIG00000012818 #36	ENSNVIG00000012787	TBX10 (ENSNVIG00000012771) #37
Ferret	MODERN SPECIES	233	LRFN4 (ENSMPUG00000003592) #7	C11orf86 (ENSMPUG00000003599) #8	SYT12 (ENSMPUG00000003609) #9	ENSMPUG00000003623	RHOD (ENSMPUG00000003632) #10	KDM2A (ENSMPUG00000003692) #11	GRK2 (ENSMPUG00000003703) #13	ANKRD13D (ENSMPUG00000003716) #14	SSH3 (ENSMPUG00000003722) #15	POLD4 (ENSMPUG00000003768) #17	CLCF1 (ENSMPUG00000003783) #18	RAD9A (ENSMPUG00000003789) #16	PPP1CA (ENSMPUG00000003801) #19	TBC1D10C (ENSMPUG00000003862) #20	ENSMPUG00000003876	RPS6KB2 (ENSMPUG00000003899) #22	PTPRCAP (ENSMPUG00000019028) #23	CORO1B (ENSMPUG00000003912) #24	CABP4 (ENSMPUG00000003919) #26	TMEM134 (ENSMPUG00000003942) #27	AIP (ENSMPUG00000003950) #28	PITPNM1 (ENSMPUG00000003958) #29	CABP2 (ENSMPUG00000003977) #31	ENSMPUG00000004023	ENSMPUG00000004029 #33	NDUFV1 (ENSMPUG00000004041) #35	ENSMPUG00000004052	ENSMPUG00000004064 #36	TBX10 (ENSMPUG00000004076) #37	ENSMPUG00000004086	UNC93B1 (ENSMPUG00000004165)
Canidae	ANCESTRAL SPECIES	13	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000162517.e.a	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000162517.e.a.a	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Dingo	MODERN SPECIES	36	LRFN4 (ENSCAFG00020022894) #7	C11orf86 (ENSCAFG00020022895) #8	ENSCAFG00020022897	SYT12 (ENSCAFG00020022898) #9	RHOD (ENSCAFG00020022899) #10	KDM2A (ENSCAFG00020022902) #11	GRK2 (ENSCAFG00020022904) #13	ANKRD13D (ENSCAFG00020022908) #14	SSH3 (ENSCAFG00020001411) #15	POLD4 (ENSCAFG00020001435) #17	CLCF1 (ENSCAFG00020001441) #18	RAD9A (ENSCAFG00020001462) #16	PPP1CA (ENSCAFG00020001475) #19	TBC1D10C (ENSCAFG00020001477) #20	CARNS1 (ENSCAFG00020001494) #21	RPS6KB2 (ENSCAFG00020001528) #22	PTPRCAP (ENSCAFG00020001549) #23	CORO1B (ENSCAFG00020001558) #24	GPR152 (ENSCAFG00020001563) #25	CABP4 (ENSCAFG00020001570) #26	ENSCAFG00020001594	AIP (ENSCAFG00020001604) #28	PITPNM1 (ENSCAFG00020001608) #29	CDK2AP2 (ENSCAFG00020001620) #30	CABP2 (ENSCAFG00020001633) #31	ENSCAFG00020001669	ENSCAFG00020001675 #33	ENSCAFG00020001698 #35	ENSCAFG00020001779	NUDT8 (ENSCAFG00020001816)	TBX10 (ENSCAFG00020001823) #37
Dog	MODERN SPECIES	9	PC (ENSCAFG00845011738)	C11orf86 (ENSCAFG00845011701) #8	ENSCAFG00845011693	SYT12 (ENSCAFG00845011643) #9	RHOD (ENSCAFG00845011598) #10	KDM2A (ENSCAFG00845011373) #11	GRK2 (ENSCAFG00845011204) #13	ANKRD13D (ENSCAFG00845011061) #14	SSH3 (ENSCAFG00845010891) #15	ENSCAFG00845010800	CLCF1 (ENSCAFG00845010717) #18	ENSCAFG00845010617 #16	PPP1CA (ENSCAFG00845010538) #19	TBC1D10C (ENSCAFG00845010400) #20	CARNS1 (ENSCAFG00845010337) #21	RPS6KB2 (ENSCAFG00845010235) #22	PTPRCAP (ENSCAFG00845010092) #24	GPR152 (ENSCAFG00845010047) #25	CABP4 (ENSCAFG00845009983) #26	TMEM134 (ENSCAFG00845009895) #27	AIP (ENSCAFG00845009822) #28	CDK2AP2 (ENSCAFG00845009575) #29	CABP2 (ENSCAFG00845009417) #31	ENSCAFG00845009326	GSTP1 (ENSCAFG00845009240) #33	NDUFV1 (ENSCAFG00845009152) #35	ENSCAFG00845009108	ENSCAFG00845009072 #36	TBX10 (ENSCAFG00845009035) #37	ALDH3B2 (ENSCAFG00845008948)	UNC93B1 (ENSCAFG00845008909)
Red fox	MODERN SPECIES	49	PC (ENSVVUG00000010525)	C11orf86 (ENSVVUG00000010521) #8	ENSVVUG00000010519	SYT12 (ENSVVUG00000010514) #9	RHOD (ENSVVUG00000010500) #10	KDM2A (ENSVVUG00000010481) #11	GRK2 (ENSVVUG00000010472) #13	ANKRD13D (ENSVVUG00000010464) #14	SSH3 (ENSVVUG00000010455) #15	POLD4 (ENSVVUG00000010444) #17	CLCF1 (ENSVVUG00000010439) #18	RAD9A (ENSVVUG00000010426) #16	PPP1CA (ENSVVUG00000010423) #19	TBC1D10C (ENSVVUG00000010411) #20	CARNS1 (ENSVVUG00000010408) #21	RPS6KB2 (ENSVVUG00000010392) #22	PTPRCAP (ENSVVUG00000010384) #23	CORO1B (ENSVVUG00000010374) #24	GPR152 (ENSVVUG00000010367) #25	CABP4 (ENSVVUG00000010355) #26	TMEM134 (ENSVVUG00000010350) #27	AIP (ENSVVUG00000010343) #28	PITPNM1 (ENSVVUG00000010318) #29	CDK2AP2 (ENSVVUG00000010306) #30	CABP2 (ENSVVUG00000010286) #31	ENSVVUG00000010271	ENSVVUG00000010240 #33	NDUFV1 (ENSVVUG00000010224) #35	ENSVVUG00000010218	NUDT8 (ENSVVUG00000010211)	ENSVVUG00000010192
Felidae	ANCESTRAL SPECIES		ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Panthera	ANCESTRAL SPECIES	18	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37
leopard	MODERN SPECIES	64	ENSPPRG00000000046	LRFN4 (ENSPPRG00000022220) #7	C11orf86 (ENSPPRG00000021097) #8	SYT12 (ENSPPRG00000020909) #9	RHOD (ENSPPRG00000020732) #10	KDM2A (ENSPPRG00000019500) #11	GRK2 (ENSPPRG00000016935) #13	ANKRD13D (ENSPPRG00000014510) #14	SSH3 (ENSPPRG00000013107) #15	POLD4 (ENSPPRG00000012466) #17	CLCF1 (ENSPPRG00000012005) #18	RAD9A (ENSPPRG00000011858) #16	PPP1CA (ENSPPRG00000011753) #19	TBC1D10C (ENSPPRG00000011477) #20	CARNS1 (ENSPPRG00000011289) #21	RPS6KB2 (ENSPPRG00000011013) #22	PTPRCAP (ENSPPRG00000010851) #23	CORO1B (ENSPPRG00000009537) #24	GPR152 (ENSPPRG00000009357) #25	CABP4 (ENSPPRG00000009084) #26	TMEM134 (ENSPPRG00000008976) #27	AIP (ENSPPRG00000008664) #28	PITPNM1 (ENSPPRG00000008543) #29	CDK2AP2 (ENSPPRG00000007878) #30	CABP2 (ENSPPRG00000007774) #31	ENSPPRG00000007615	ENSPPRG00000006958 #33	NDUFV1 (ENSPPRG00000006947) #35	ENSPPRG00000006725	ENSPPRG00000006340 #36	TBX10 (ENSPPRG00000006221) #37
lion	MODERN SPECIES	10	LRFN4 (ENSPLOG00000010292) #7	ENSPLOG00000010311	C11orf86 (ENSPLOG00000010341) #8	SYT12 (ENSPLOG00000010366) #9	RHOD (ENSPLOG00000010416) #10	KDM2A (ENSPLOG00000010522) #11	GRK2 (ENSPLOG00000010645) #13	ANKRD13D (ENSPLOG00000010714) #14	SSH3 (ENSPLOG00000010812) #15	POLD4 (ENSPLOG00000010990) #17	CLCF1 (ENSPLOG00000011060) #18	RAD9A (ENSPLOG00000011138) #16	PPP1CA (ENSPLOG00000011253) #19	TBC1D10C (ENSPLOG00000011370) #20	CARNS1 (ENSPLOG00000011427) #21	RPS6KB2 (ENSPLOG00000011644) #22	PTPRCAP (ENSPLOG00000011683) #23	CORO1B (ENSPLOG00000011738) #24	GPR152 (ENSPLOG00000011768) #25	CABP4 (ENSPLOG00000011804) #26	ENSPLOG00000011943	AIP (ENSPLOG00000012104) #28	PITPNM1 (ENSPLOG00000012168) #29	CDK2AP2 (ENSPLOG00000012271) #30	CABP2 (ENSPLOG00000012338) #31	ENSPLOG00000012523 #33	NDUFV1 (ENSPLOG00000012672) #35	ENSPLOG00000012919	ENSPLOG00000013043 #36	TBX10 (ENSPLOG00000013092) #37	ALDH3B2 (ENSPLOG00000013293)
Tiger	MODERN SPECIES	492									SSH3 (ENSPTIG00000007418) #15	POLD4 (ENSPTIG00000007757) #17	CLCF1 (ENSPTIG00000008383) #18	RAD9A (ENSPTIG00000008690) #16	PPP1CA (ENSPTIG00000009825) #19	TBC1D10C (ENSPTIG00000010601) #20	CARNS1 (ENSPTIG00000011037) #21	RPS6KB2 (ENSPTIG00000011233) #22	ENSPTIG00000011991 #24	ENSPTIG00000012585	CABP4 (ENSPTIG00000012944) #26	ENSPTIG00000013619 #27	AIP (ENSPTIG00000014436) #28	PITPNM1 (ENSPTIG00000014649) #29	CDK2AP2 (ENSPTIG00000016923) #30	CABP2 (ENSPTIG00000017163) #31
Cat	MODERN SPECIES	241	PC (ENSFCAG00000007401)	LRFN4 (ENSFCAG00000007402) #7	ENSFCAG00000022197	CD1H11orf86 (ENSFCAG00000033720) #8	SYT12 (ENSFCAG00000007404) #9	RHOD (ENSFCAG00000043878) #10	KDM2A (ENSFCAG00000003383) #11	GRK2 (ENSFCAG00000003386) #13	ANKRD13D (ENSFCAG00000003388) #14	SSH3 (ENSFCAG00000003389) #15	POLD4 (ENSFCAG00000026317) #17	CLCF1 (ENSFCAG00000030466) #18	RAD9A (ENSFCAG00000003391) #16	PPP1CA (ENSFCAG00000028502) #19	CARNS1 (ENSFCAG00000003394) #21	RPS6KB2 (ENSFCAG00000003395) #22	PTPRCAP (ENSFCAG00000045093) #23	CORO1B (ENSFCAG00000003396) #24	TMEM134 (ENSFCAG00000031246) #25	AIP (ENSFCAG00000001749) #28	CABP4 (ENSFCAG00000003398) #26	ENSFCAG00000052433	PITPNM1 (ENSFCAG00000001751) #29	CDK2AP2 (ENSFCAG00000042271) #30	CABP2 (ENSFCAG00000001754) #31	GSTP1 (ENSFCAG00000001755) #33	NDUFV1 (ENSFCAG00000001757) #35	ENSFCAG00000022755	TBX10 (ENSFCAG00000001760) #37	ENSFCAG00000044091	UNC93B1 (ENSFCAG00000002986)
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875
Equus	ANCESTRAL SPECIES	11	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT01090000263356	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000163435.f #33	ENSGT01100000264273	ENSGT00940000163435.e.b #33	ENSGT00390000010641 #35	ENSGT00940000162875
Horse	MODERN SPECIES	3	PC (ENSECAG00000024887)	C12H11orf86 (ENSECAG00000025011) #8	SYT12 (ENSECAG00000025014) #9	RHOD (ENSECAG00000055527) #10	ENSECAG00000037664	KDM2A (ENSECAG00000025072) #11	GRK2 (ENSECAG00000002944) #13	ANKRD13D (ENSECAG00000058854) #14	SSH3 (ENSECAG00000009653) #15	ENSECAG00000010008 #17	CLCF1 (ENSECAG00000010091) #18	RAD9A (ENSECAG00000010129) #16	TBC1D10C (ENSECAG00000012029) #20	PPP1CA (ENSECAG00000010532) #19	CARNS1 (ENSECAG00000012116) #21	RPS6KB2 (ENSECAG00000012221) #22	PTPRCAP (ENSECAG00000014875) #23	CORO1B (ENSECAG00000014882) #24	GPR152 (ENSECAG00000016385) #25	CABP4 (ENSECAG00000016408) #26	TMEM134 (ENSECAG00000016857) #27	AIP (ENSECAG00000017167) #28	PITPNM1 (ENSECAG00000017776) #29	CDK2AP2 (ENSECAG00000020079) #30	CABP2 (ENSECAG00000020097) #31	ENSECAG00000020462 #33	NDUFV1 (ENSECAG00000021477) #35	ENSECAG00000054975	DOC2G (ENSECAG00000022087)	TBX10 (ENSECAG00000022406) #37	ALDH3B2 (ENSECAG00000000896)
Donkey	MODERN SPECIES	21	PC (ENSEASG00005005157)	ENSEASG00005036361 #8	SYT12 (ENSEASG00005005838) #9	RHOD (ENSEASG00005036709) #10	ENSEASG00005024407	KDM2A (ENSEASG00005005843) #11	GRK2 (ENSEASG00005005846) #13	ANKRD13D (ENSEASG00005005850) #14	SSH3 (ENSEASG00005005855) #15	ENSEASG00005028320 #17	CLCF1 (ENSEASG00005030157) #18	ENSEASG00005005863 #16	PPP1CA (ENSEASG00005005876) #19	TBC1D10C (ENSEASG00005005914) #20	CARNS1 (ENSEASG00005005916) #21	RPS6KB2 (ENSEASG00005005920) #22	PTPRCAP (ENSEASG00005005924) #23	CORO1B (ENSEASG00005005926) #24	GPR152 (ENSEASG00005005928) #25	CABP4 (ENSEASG00005005930) #26	TMEM134 (ENSEASG00005035157) #27	AIP (ENSEASG00005005936) #28	PITPNM1 (ENSEASG00005005939) #29	CDK2AP2 (ENSEASG00005005947) #30	CABP2 (ENSEASG00005005950) #31	ENSEASG00005005953	ENSEASG00005005960 #33	ENSEASG00005026638	NDUFV1 (ENSEASG00005005962) #35	ENSEASG00005005966	ENSEASG00005005969 #36
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Megabat	MODERN SPECIES	2353						KDM2A (ENSPVAG00000008538) #11	GRK2 (ENSPVAG00000008543) #13	ANKRD13D (ENSPVAG00000008545) #14	SSH3 (ENSPVAG00000008548) #15	POLD4 (ENSPVAG00000008550) #17	CLCF1 (ENSPVAG00000008552) #18	RAD9A (ENSPVAG00000008553) #16	PPP1CA (ENSPVAG00000008557) #19	TBC1D10C (ENSPVAG00000008561) #20	ENSPVAG00000008564 #21	RPS6KB2 (ENSPVAG00000008565) #22	CORO1B (ENSPVAG00000008571) #24	CABP4 (ENSPVAG00000008576) #26	TMEM134 (ENSPVAG00000008578) #27	AIP (ENSPVAG00000008580) #28	PITPNM1 (ENSPVAG00000008581) #29	CDK2AP2 (ENSPVAG00000008582) #30	CABP2 (ENSPVAG00000008584) #31	ENSPVAG00000008586 #33	NDUFV1 (ENSPVAG00000008590) #35	ENSPVAG00000008591 #36	ENSPVAG00000008592	ACY3 (ENSPVAG00000008593)
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2707																ENSMLUG00000026476 #22
Microbat	MODERN SPECIES	963	PURG (ENSMLUG00000024424)	ENSMLUG00000024122	ENSMLUG00000016793	ENSMLUG00000008035	TEX15 (ENSMLUG00000014276)	PPP2CB (ENSMLUG00000012897)	UBXN8 (ENSMLUG00000016846)	GSR (ENSMLUG00000010568)	ENSMLUG00000023946	GTF2E2 (ENSMLUG00000007814)	RBPMS (ENSMLUG00000009391)	DCTN6 (ENSMLUG00000028330)	MBOAT4 (ENSMLUG00000015635)	LEPROTL1 (ENSMLUG00000026782)	SARAF (ENSMLUG00000012942)	ENSMLUG00000022302 #22	DUSP4 (ENSMLUG00000007291)	TNKS (ENSMLUG00000007233)	PPP1R3B (ENSMLUG00000016137)	ERI1 (ENSMLUG00000006288)	ENSMLUG00000025949	PRAG1 (ENSMLUG00000000303)	LONRF1 (ENSMLUG00000000300)	ENSMLUG00000024640	ENSMLUG00000013032	DLC1 (ENSMLUG00000013036)	ENSMLUG00000027134	ENSMLUG00000023833	C8orf48 (ENSMLUG00000013054)
Microbat	MODERN SPECIES	1351				SYT12 (ENSMLUG00000011608) #9	RHOD (ENSMLUG00000011602) #10	KDM2A (ENSMLUG00000005065) #11	GRK2 (ENSMLUG00000005075) #13	ANKRD13D (ENSMLUG00000005085) #14	SSH3 (ENSMLUG00000012082) #15	POLD4 (ENSMLUG00000005095) #17	CLCF1 (ENSMLUG00000008928) #18	RAD9A (ENSMLUG00000005102) #16	PPP1CA (ENSMLUG00000005112) #19	TBC1D10C (ENSMLUG00000005115) #20	ENSMLUG00000005122	ENSMLUG00000005128 #22	PTPRCAP (ENSMLUG00000029066) #23	CORO1B (ENSMLUG00000025612) #24	GPR152 (ENSMLUG00000022557) #25	CABP4 (ENSMLUG00000005139) #26	TMEM134 (ENSMLUG00000005143) #27	AIP (ENSMLUG00000011271) #28	PITPNM1 (ENSMLUG00000011222) #29	CDK2AP2 (ENSMLUG00000011488) #30	CABP2 (ENSMLUG00000011504) #31	GSTP1 (ENSMLUG00000011529)	NDUFV1 (ENSMLUG00000011539) #35	ENSMLUG00000026150	TBX10 (ENSMLUG00000011576) #37	ENSMLUG00000011588	ALDH3B2 (ENSMLUG00000028367)
Greater horseshoe bat	MODERN SPECIES	2	LRFN4 (ENSRFEG00010001285) #7	PC (ENSRFEG00010001232)	C11orf86 (ENSRFEG00010001191) #8	SYT12 (ENSRFEG00010001151) #9	RHOD (ENSRFEG00010001120) #10	KDM2A (ENSRFEG00010001017) #11	GRK2 (ENSRFEG00010000957) #13	ANKRD13D (ENSRFEG00010000903) #14	SSH3 (ENSRFEG00010000770) #15	POLD4 (ENSRFEG00010000741) #17	CLCF1 (ENSRFEG00010000699) #18	RAD9A (ENSRFEG00010000657) #16	PPP1CA (ENSRFEG00010000614) #19	TBC1D10C (ENSRFEG00010000562) #20	CARNS1 (ENSRFEG00010021672) #21	RPS6KB2 (ENSRFEG00010021650) #22	PTPRCAP (ENSRFEG00010021642) #23	CORO1B (ENSRFEG00010021624) #24	GPR152 (ENSRFEG00010021609) #25	CABP4 (ENSRFEG00010021584) #26	TMEM134 (ENSRFEG00010021554) #27	AIP (ENSRFEG00010021536) #28	PITPNM1 (ENSRFEG00010021507) #29	CDK2AP2 (ENSRFEG00010021494) #30	CABP2 (ENSRFEG00010021473) #31	ENSRFEG00010021451	ENSRFEG00010021433	NDUFV1 (ENSRFEG00010021407) #35	ENSRFEG00010021394	ENSRFEG00010021387 #36	TBX10 (ENSRFEG00010021376) #37
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00530000063359.B
Tenrec	MODERN SPECIES	6863																RPS6KB2 (ENSETEG00000011175) #22
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000163889	ENSGT00940000154816.a.a #37	ENSGT00530000063359.B
Hyrax	MODERN SPECIES	5783											POLD4 (ENSPCAG00000008381) #17	CLCF1 (ENSPCAG00000008411) #18	RAD9A (ENSPCAG00000008438) #16	PPP1CA (ENSPCAG00000008488) #19	TBC1D10C (ENSPCAG00000008533) #20	RPS6KB2 (ENSPCAG00000008582) #22	PTPRCAP (ENSPCAG00000008661) #23	CORO1B (ENSPCAG00000008674) #24	GPR152 (ENSPCAG00000008723) #25	CABP4 (ENSPCAG00000008736) #26	ENSPCAG00000008770 #27	AIP (ENSPCAG00000008812) #28	PITPNM1 (ENSPCAG00000008848) #29	CDK2AP2 (ENSPCAG00000008952) #30	CABP2 (ENSPCAG00000008970) #31
Elephant	MODERN SPECIES	532	LRFN4 (ENSLAFG00000026880) #7	PC (ENSLAFG00000000987)	C11orf86 (ENSLAFG00000000993) #8	SYT12 (ENSLAFG00000013255) #9	RHOD (ENSLAFG00000013260) #10	KDM2A (ENSLAFG00000006277) #11	GRK2 (ENSLAFG00000015685) #13	ANKRD13D (ENSLAFG00000002412) #14	SSH3 (ENSLAFG00000002413) #15	POLD4 (ENSLAFG00000025827) #17	CLCF1 (ENSLAFG00000010943) #18	RAD9A (ENSLAFG00000008918) #16	PPP1CA (ENSLAFG00000022802) #19	TBC1D10C (ENSLAFG00000029168) #20	ENSLAFG00000030838 #21	RPS6KB2 (ENSLAFG00000008925) #22	PTPRCAP (ENSLAFG00000022927) #23	CORO1B (ENSLAFG00000008929) #24	ENSLAFG00000028907	ENSLAFG00000003585 #26	ENSLAFG00000032093	AIP (ENSLAFG00000005289) #28	PITPNM1 (ENSLAFG00000022098) #29	CDK2AP2 (ENSLAFG00000010947) #30	CABP2 (ENSLAFG00000000855) #31	GSTP1 (ENSLAFG00000022378)	NDUFV1 (ENSLAFG00000022729) #35	ENSLAFG00000030851	NUDT8 (ENSLAFG00000015108)	TBX10 (ENSLAFG00000022296) #37	ENSLAFG00000031633
Xenarthra	ANCESTRAL SPECIES	35		ENSGT00390000004124	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000164125	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b	ENSGT00940000155904.e.b
Armadillo	MODERN SPECIES	4298	PC (ENSDNOG00000004286)	LRFN4 (ENSDNOG00000004298) #7	C11orf86 (ENSDNOG00000037644) #8	SYT12 (ENSDNOG00000005949) #9	RHOD (ENSDNOG00000043702) #10	ENSDNOG00000044420	KDM2A (ENSDNOG00000002051) #11	ANKRD13D (ENSDNOG00000002857) #14	SSH3 (ENSDNOG00000039703) #15	ENSDNOG00000032805	POLD4 (ENSDNOG00000035470) #17	CLCF1 (ENSDNOG00000044435) #18	RAD9A (ENSDNOG00000039829) #16	PPP1CA (ENSDNOG00000042750) #19	TBC1D10C (ENSDNOG00000037883) #20	RPS6KB2 (ENSDNOG00000041769) #22	PTPRCAP (ENSDNOG00000034706) #23	CORO1B (ENSDNOG00000002044) #24	GPR152 (ENSDNOG00000033395) #25	CABP4 (ENSDNOG00000046240) #26	AIP (ENSDNOG00000042576) #28	ENSDNOG00000043892 #29	CDK2AP2 (ENSDNOG00000033375) #30	CABP2 (ENSDNOG00000046652) #31	ENSDNOG00000046765	GSTP1 (ENSDNOG00000035023)	NDUFV1 (ENSDNOG00000007356) #35	ENSDNOG00000034928	TBX10 (ENSDNOG00000025226) #37	ACY3 (ENSDNOG00000040590)	ALDH3B2 (ENSDNOG00000005545)
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484.c #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00940000163374
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484.c #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00900000141164	ENSGT00940000162195 #7	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484.c #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460.p	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Diprotodontia_a	DUPLICATION
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000162195 #7	ENSGT00900000141164	ENSGT00390000012120 #8	ENSGT00940000158627 #9	ENSGT00940000161731 #10	ENSGT00940000155484.c #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a.g #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000011766 #27	ENSGT00390000001289.a #28	ENSGT00940000161522 #29	ENSGT00940000160334 #30	ENSGT00940000159796 #31	ENSGT00940000162460.p	ENSGT00390000010641 #35	ENSGT00940000162875	ENSGT00940000162775 #36	ENSGT00940000154816.a.a #37	ENSGT00390000001189.b
Common wonbat	MODERN SPECIES	714	LRFN4 (ENSVURG00010000273) #7	PC (ENSVURG00010000248)	ENSVURG00010000226 #8	SYT12 (ENSVURG00010000192) #9	RHOD (ENSVURG00010000181) #10	ENSVURG00010000125 #11	GRK2 (ENSVURG00010024770) #13	ANKRD13D (ENSVURG00010024763) #14	SSH3 (ENSVURG00010024758) #15	POLD4 (ENSVURG00010024756) #17	CLCF1 (ENSVURG00010024754) #18	RAD9A (ENSVURG00010024753) #16	PPP1CA (ENSVURG00010024750) #19	TBC1D10C (ENSVURG00010024747) #20	CARNS1 (ENSVURG00010024729) #21	ENSVURG00010024722 #22	ENSVURG00010024721 #23	CORO1B (ENSVURG00010024714) #24	CABP4 (ENSVURG00010024706) #26	TMEM134 (ENSVURG00010024702) #27	PITPNM1 (ENSVURG00010024698) #29	CDK2AP2 (ENSVURG00010024697) #30	CABP2 (ENSVURG00010024694) #31	ENSVURG00010024689	ENSVURG00010024685	NDUFV1 (ENSVURG00010024680) #35	ENSVURG00010024674	ENSVURG00010024670 #36	TBX10 (ENSVURG00010024668) #37	ENSVURG00010024665	ENSVURG00010024664
koala	MODERN SPECIES	179	LRFN4 (ENSPCIG00000026293) #7	ENSPCIG00000026294 #8	SYT12 (ENSPCIG00000036826) #9	RHOD (ENSPCIG00000026303) #10	ENSPCIG00000026309 #11	GRK2 (ENSPCIG00000027498) #13	ANKRD13D (ENSPCIG00000027499) #14	SSH3 (ENSPCIG00000027500) #15	ENSPCIG00000034257 #17	CLCF1 (ENSPCIG00000026625) #18	RAD9A (ENSPCIG00000026626) #16	PPP1CA (ENSPCIG00000026630) #19	ENSPCIG00000035876 #20	ENSPCIG00000032873	ENSPCIG00000037041 #21	RPS6KB2 (ENSPCIG00000034205) #22	CORO1B (ENSPCIG00000003938) #24	GPR152 (ENSPCIG00000003959) #25	ENSPCIG00000033689 #26	ENSPCIG00000003975 #27	ENSPCIG00000022014 #28	PITPNM1 (ENSPCIG00000022016) #29	CABP2 (ENSPCIG00000022020) #31	GSTP1 (ENSPCIG00000022022)	NDUFV1 (ENSPCIG00000022025) #35	ENSPCIG00000022032	ENSPCIG00000033935 #36	TBX10 (ENSPCIG00000009222) #37	ENSPCIG00000009223	ENSPCIG00000009224	UNC93B1 (ENSPCIG00000036094)
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000155062.a.h #22
Common wonbat	MODERN SPECIES	1019	RHOG (ENSVURG00010022226)	STIM1 (ENSVURG00010022220)	RRM1 (ENSVURG00010022211)	ENSVURG00010022208	ENSVURG00010022203	ENSVURG00010022200	ENSVURG00010022196	ENSVURG00010022195	ENSVURG00010022191	OR52M1 (ENSVURG00010022188)	ENSVURG00010022182	ENSVURG00010022181	ENSVURG00010022176	ENSVURG00010022171	ENSVURG00010022170	ENSVURG00010022168 #22	ENSVURG00010022167	ENSVURG00010022166	ENSVURG00010022164	ENSVURG00010022161	ENSVURG00010022159	ENSVURG00010022158	ENSVURG00010022156	ENSVURG00010022151	ENSVURG00010022139	ENSVURG00010022135	ENSVURG00010022113	OR51D1 (ENSVURG00010022108)	OR51E1 (ENSVURG00010022106)	ENSVURG00010022103	ENSVURG00010022100
Wallaby	MODERN SPECIES	8404																RPS6KB2 (ENSMEUG00000000294) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000027356	ENSSHAG00000026263 #7	PC (ENSSHAG00000006586)	ENSSHAG00000022722 #8	SYT12 (ENSSHAG00000005135) #9	RHOD (ENSSHAG00000004771) #10	ENSSHAG00000000130 #11	GRK2 (ENSSHAG00000020611) #13	ANKRD13D (ENSSHAG00000025475) #14	ENSSHAG00000026149 #15	CLCF1 (ENSSHAG00000004986) #18	RAD9A (ENSSHAG00000028578) #16	PPP1CA (ENSSHAG00000030720) #19	TBC1D10C (ENSSHAG00000000027) #20	ENSSHAG00000023289	RPS6KB2 (ENSSHAG00000002574) #22	ENSSHAG00000002870 #23	GPR152 (ENSSHAG00000025856) #25	AIP (ENSSHAG00000001064) #28	ENSSHAG00000029978 #29	CABP2 (ENSSHAG00000001734) #31	ENSSHAG00000005628 #35	ENSSHAG00000005499	ENSSHAG00000005329 #36	TBX10 (ENSSHAG00000005122) #37	ENSSHAG00000004624	ENSSHAG00000024605	ENSSHAG00000002419	ENSSHAG00000021272	NDUFS8 (ENSSHAG00000008291)	TCIRG1 (ENSSHAG00000008168)
Opossum	MODERN SPECIES	7	ENSMODG00000008033	ENSMODG00000041541	RCE1 (ENSMODG00000007858)	LRFN4 (ENSMODG00000007842) #7	PC (ENSMODG00000007831)	ENSMODG00000043771 #8	SYT12 (ENSMODG00000007791) #9	ENSMODG00000007777 #10	ENSMODG00000007767 #11	ENSMODG00000007721 #14	ENSMODG00000007683 #17	RAD9A (ENSMODG00000007675) #16	ENSMODG00000037586	ENSMODG00000007632 #20	CARNS1 (ENSMODG00000007620) #21	RPS6KB2 (ENSMODG00000007615) #22	ENSMODG00000043713 #23	ENSMODG00000007587 #24	GPR152 (ENSMODG00000007491) #25	CABP4 (ENSMODG00000007485) #26	TMEM134 (ENSMODG00000024112) #27	ENSMODG00000007471 #28	TRMU (ENSMODG00000007433)	ENSMODG00000007410	TTC38 (ENSMODG00000007396)	CDPF1 (ENSMODG00000024113)	PPARA (ENSMODG00000007365)	ENSMODG00000024114	ENSMODG00000007333	WNT7B (ENSMODG00000007327)	ENSMODG00000007304
Platypus	MODERN SPECIES	14	ENSOANG00000037515 ##25	ENSOANG00000005851 ##25	ENSOANG00000043368 ##25	ENSOANG00000043730 ##25	ENSOANG00000015174 ##25	ENSOANG00000040700 #10	KDM2A (ENSOANG00000005993) #11	GRK2 (ENSOANG00000037510) #13	ANKRD13D (ENSOANG00000044186) #14	SSH3 (ENSOANG00000039995) #15	ENSOANG00000038827 #17	ENSOANG00000046031 #18	RAD9A (ENSOANG00000011414) #16	PPP1CA (ENSOANG00000011413) #19	CARNS1 (ENSOANG00000005965) #21	RPS6KB2 (ENSOANG00000036266) #22	ENSOANG00000050645 #23	CORO1B (ENSOANG00000047940) #24	ENSOANG00000050272	ENSOANG00000050449 #26	ENSOANG00000042594 #27	AIP (ENSOANG00000037575) #28	PITPNM1 (ENSOANG00000040791) #29	CDK2AP2 (ENSOANG00000046933) #30	GSTP1 (ENSOANG00000037742)	NDUFV1 (ENSOANG00000042354) #35	ENSOANG00000046295	ENSOANG00000038879 ##37	ACY3 (ENSOANG00000029117)	ENSOANG00000047139	UNC93B1 (ENSOANG00000036137)
Sauria	ANCESTRAL SPECIES	73	ENSGT01030000234639.A.b.c ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26
Lepidosauria	ANCESTRAL SPECIES	64	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Episquamata	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.c.h ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Laterata	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.c.h ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00960000189182	ENSGT00990000203796.b	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Common wall lizard	MODERN SPECIES		POLD4 (ENSPMRG00000011137) #17	ENSPMRG00000011145	ENSPMRG00000011149	ENSPMRG00000011157	ENSPMRG00000011161	ENSPMRG00000011169	ENSPMRG00000011181	ENSPMRG00000011205	ENSPMRG00000011214	CLCF1 (ENSPMRG00000011218) #18	RAD9A (ENSPMRG00000011225) #16	PPP1CA (ENSPMRG00000011241) #19	TBC1D10C (ENSPMRG00000011247) #20	ENSPMRG00000011251	ENSPMRG00000011257	RPS6KB2 (ENSPMRG00000011262) #22	PTPRCAP (ENSPMRG00000011270) #23	CORO1B (ENSPMRG00000011275) #24	CABP4 (ENSPMRG00000011281) #26	ACY3 (ENSPMRG00000011291)	ENSPMRG00000011306	TCIRG1 (ENSPMRG00000011344)	ENSPMRG00000011532	ALDH3B2 (ENSPMRG00000011539)	UNC93B1 (ENSPMRG00000011570)	MAX (ENSPMRG00000011595)	FNTB (ENSPMRG00000011607)	RAB15 (ENSPMRG00000011743)	GPX2 (ENSPMRG00000011751)	SPTB (ENSPMRG00000011932)	PLEKHG3 (ENSPMRG00000013193)
Argentine black and white tegu	MODERN SPECIES	27	GRK2 (ENSSMRG00000009956) #13	ANKRD13D (ENSSMRG00000009957) #14	SSH3 (ENSSMRG00000009958) #15	ENSSMRG00000009959	POLD4 (ENSSMRG00000009960) #17	ENSSMRG00000009962	ENSSMRG00000009964	ENSSMRG00000009965	ENSSMRG00000009966	ENSSMRG00000009967	CLCF1 (ENSSMRG00000009968) #18	RAD9A (ENSSMRG00000009969) #16	PPP1CA (ENSSMRG00000009971) #19	TBC1D10C (ENSSMRG00000009973) #20	ENSSMRG00000010343	RPS6KB2 (ENSSMRG00000010348) #22	CORO1B (ENSSMRG00000010355) #24	CABP4 (ENSSMRG00000010360) #26	ACY3 (ENSSMRG00000010363)	ENSSMRG00000010420	TCIRG1 (ENSSMRG00000010426)	NDUFS8 (ENSSMRG00000010429)	ENSSMRG00000010431	ENSSMRG00000010488	ENSSMRG00000010520	UNC93B1 (ENSSMRG00000010568)	MAX (ENSSMRG00000010573)	FNTB (ENSSMRG00000010574)	RAB15 (ENSSMRG00000010576)	GPX2 (ENSSMRG00000010577)	CHURC1 (ENSSMRG00000010578)
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01030000234639.A.b.c.h ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Elapidae	ANCESTRAL SPECIES		ENSGT01100000263496.C.b.b	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b.h.a.b	ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Indian cobra	MODERN SPECIES		ENSNNAG00000015230	ENSNNAG00000015204	ENSNNAG00000015180	ENSNNAG00000015140	POLD4 (ENSNNAG00000015065) #17	ENSNNAG00000015037	ENSNNAG00000015025	ENSNNAG00000015013	ENSNNAG00000014982	ENSNNAG00000014959	CLCF1 (ENSNNAG00000014943) #18	RAD9A (ENSNNAG00000014879) #16	PPP1CA (ENSNNAG00000014855) #19	TBC1D10C (ENSNNAG00000014817) #20	ENSNNAG00000014795	RPS6KB2 (ENSNNAG00000014748) #22	PTPRCAP (ENSNNAG00000014726) #23	CORO1B (ENSNNAG00000014707) #24	CABP4 (ENSNNAG00000014685) #26	ACY3 (ENSNNAG00000014664)	TBX10 (ENSNNAG00000014624) #37	TCIRG1 (ENSNNAG00000014584)	ENSNNAG00000014335	NDUFS8 (ENSNNAG00000014296)	ENSNNAG00000013740	UNC93B1 (ENSNNAG00000013677)	MAX (ENSNNAG00000013615)	FNTB (ENSNNAG00000013581)	RAB15 (ENSNNAG00000013561)	GPX2 (ENSNNAG00000013545)	CHURC1 (ENSNNAG00000013529)
Elapidae_a	ANCESTRAL SPECIES	5										ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Acanthophiinae	ANCESTRAL SPECIES	7										ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Eastern brown snake	MODERN SPECIES	37									ENSPTXG00000010701	CLCF1 (ENSPTXG00000010699) #18	RAD9A (ENSPTXG00000010697) #16	PPP1CA (ENSPTXG00000010695) #19	TBC1D10C (ENSPTXG00000010679) #20	ENSPTXG00000010674	PTPRCAP (ENSPTXG00000010673) #23	RPS6KB2 (ENSPTXG00000010671) #22	CORO1B (ENSPTXG00000010669) #24	CABP4 (ENSPTXG00000010667) #26	ACY3 (ENSPTXG00000010665)	ENSPTXG00000010662	TCIRG1 (ENSPTXG00000010657)	ENSPTXG00000010652	NDUFS8 (ENSPTXG00000010649)	ENSPTXG00000010498	UNC93B1 (ENSPTXG00000010482)	MAX (ENSPTXG00000010479)	FNTB (ENSPTXG00000010478)	RAB15 (ENSPTXG00000010477)	GPX2 (ENSPTXG00000010476)	CHURC1 (ENSPTXG00000010475)	SPTB (ENSPTXG00000010474)
Mainland tiger snake	MODERN SPECIES	12									ENSNSUG00000012656	ENSNSUG00000012655	CLCF1 (ENSNSUG00000012654) #18	RAD9A (ENSNSUG00000012653) #16	PPP1CA (ENSNSUG00000012652) #19	TBC1D10C (ENSNSUG00000012651) #20	ENSNSUG00000012649	RPS6KB2 (ENSNSUG00000012636) #22	PTPRCAP (ENSNSUG00000012635) #23	CORO1B (ENSNSUG00000012634) #24	CABP4 (ENSNSUG00000012633) #26	ACY3 (ENSNSUG00000012632)	TCIRG1 (ENSNSUG00000012612)	ENSNSUG00000012609	NDUFS8 (ENSNSUG00000012604)	ENSNSUG00000012603	ENSNSUG00000012602	UNC93B1 (ENSNSUG00000012601)	MAX (ENSNSUG00000012600)	FNTB (ENSNSUG00000012585)	RAB15 (ENSNSUG00000012583)	GPX2 (ENSNSUG00000012581)	CHURC1 (ENSNSUG00000012580)
Blue-lipped sea krait	MODERN SPECIES	5731																RPS6KB2 (ENSLLTG00000014903) #22
Lizard	MODERN SPECIES		SSH3 (ENSACAG00000007983) #15	ENSACAG00000023851	POLD4 (ENSACAG00000034932) #17	ENSACAG00000008036	ENSACAG00000008021	ENSACAG00000026621	ENSACAG00000008041	ENSACAG00000044604	ENSACAG00000024500	CLCF1 (ENSACAG00000040580) #18	RAD9A (ENSACAG00000008066) #16	PPP1CA (ENSACAG00000008113) #19	TBC1D10C (ENSACAG00000008155) #20	ENSACAG00000036778	CARNS1 (ENSACAG00000044067) #21	RPS6KB2 (ENSACAG00000008242) #22	CORO1B (ENSACAG00000008365) #24	ENSACAG00000035731	CABP4 (ENSACAG00000008481) #26	ENSACAG00000008489	ENSACAG00000008549	ENSACAG00000008604	ENSACAG00000008728	ENSACAG00000015237	ENSACAG00000008836	MAX (ENSACAG00000043849)	FNTB (ENSACAG00000008948)	RAB15 (ENSACAG00000009008)	GPX2 (ENSACAG00000041232)	CHURC1 (ENSACAG00000009057)	SPTB (ENSACAG00000009068)
tuatara	MODERN SPECIES	786				ENSSPUG00000009704	KDM2A (ENSSPUG00000009673) #11	GRK2 (ENSSPUG00000009626) #13	ANKRD13D (ENSSPUG00000009595) #14	SSH3 (ENSSPUG00000009526) #15	ENSSPUG00000009478	POLD4 (ENSSPUG00000009459) #17	CLCF1 (ENSSPUG00000009438) #18	RAD9A (ENSSPUG00000009423) #16	PPP1CA (ENSSPUG00000009371) #19	TBC1D10C (ENSSPUG00000009318) #20	ENSSPUG00000009270	RPS6KB2 (ENSSPUG00000009249) #22	PTPRCAP (ENSSPUG00000009240) #23	CORO1B (ENSSPUG00000009205) #24	CABP4 (ENSSPUG00000009187) #26	ENSSPUG00000009158	TCIRG1 (ENSSPUG00000009129)	NDUFS8 (ENSSPUG00000009108)	ALDH3B2 (ENSSPUG00000009070)	UNC93B1 (ENSSPUG00000009049)	MAX (ENSSPUG00000009027)
Archelosauria	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.c ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b	ENSGT00940000162443
Cryptodira	ANCESTRAL SPECIES	47	ENSGT01030000234639.A.b.c.b ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162329.c	ENSGT00390000017281
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT01030000234639.A.b.c.b ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT01030000234639.A.b.c.a.a.b ##25	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b
Emydidae	ANCESTRAL SPECIES	54		ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b.db #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT01030000234639.A.b.c.a.a.b ##25	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.d.a	ENSGT00940000175288	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b	ENSGT01030000234567.B.b.z	ENSGT00940000162443
Three-toed box turtle	MODERN SPECIES	34		RHOD (ENSTMTG00000018341) #10	KDM2A (ENSTMTG00000018306) #11	GRK2 (ENSTMTG00000017447) #13	ANKRD13D (ENSTMTG00000017354) #14	SSH3 (ENSTMTG00000017324) #15	ENSTMTG00000017301	POLD4 (ENSTMTG00000017284) #17	ENSTMTG00000017258	ENSTMTG00000017240	CLCF1 (ENSTMTG00000017231) #18	RAD9A (ENSTMTG00000017216) #16	ENSTMTG00000017199 #19	TBC1D10C (ENSTMTG00000017126) #20	ENSTMTG00000017104	RPS6KB2 (ENSTMTG00000017085) #22	PTPRCAP (ENSTMTG00000017074) #23	CORO1B (ENSTMTG00000017036) #24	CABP4 (ENSTMTG00000017012) #26	ENSTMTG00000016999	ENSTMTG00000016974	ACY3 (ENSTMTG00000016860)	OSBP (ENSTMTG00000016825)	PATL1 (ENSTMTG00000016462)	ENSTMTG00000016417	ENSTMTG00000016385	STX3 (ENSTMTG00000016340)	MRPL16 (ENSTMTG00000016326)	CBLIF (ENSTMTG00000016241)	TCN1 (ENSTMTG00000016191)	ENSTMTG00000016174
painted turtle	MODERN SPECIES	13	RHOD (ENSCPBG00000000110) #10	KDM2A (ENSCPBG00000000117) #11	GRK2 (ENSCPBG00000000461) #13	ANKRD13D (ENSCPBG00000009323) #14	SSH3 (ENSCPBG00000009325) #15	ENSCPBG00000009327	POLD4 (ENSCPBG00000009329) #17	ENSCPBG00000009332	ENSCPBG00000009334	ENSCPBG00000009337	CLCF1 (ENSCPBG00000009339) #18	RAD9A (ENSCPBG00000009342) #16	PPP1CA (ENSCPBG00000009344) #19	TBC1D10C (ENSCPBG00000009346) #20	ENSCPBG00000009349	RPS6KB2 (ENSCPBG00000009351) #22	PTPRCAP (ENSCPBG00000009352) #23	CORO1B (ENSCPBG00000009361) #24	ENSCPBG00000009482 #25	CABP4 (ENSCPBG00000009488) #26	ENSCPBG00000009492 #25	ACY3 (ENSCPBG00000009496)	ENSCPBG00000009500 ##25	OSBP (ENSCPBG00000009513)	STX3 (ENSCPBG00000009554)	ENSCPBG00000009572	MRPL16 (ENSCPBG00000009578)	CBLIF (ENSCPBG00000009582)	TCN1 (ENSCPBG00000009594)	MS4A12 (ENSCPBG00000009604)	R3HDM1 (ENSCPBG00000009645)
Testudinidae	ANCESTRAL SPECIES	61	ENSGT01030000234639.A.b.c.b ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001189.b.e	ENSGT01030000234639.A.b.c.a.a.b ##25	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01060000248581.A.a.a.b.d.b	ENSGT00940000175288	ENSGT01030000234627.a.b.a.a
Abingdon island giant tortoise	MODERN SPECIES	1848	KDM2A (ENSCABG00000010947) #11	GRK2 (ENSCABG00000010953) #13	ANKRD13D (ENSCABG00000010975) #14	SSH3 (ENSCABG00000011160) #15	ENSCABG00000011164	POLD4 (ENSCABG00000011165) #17	ENSCABG00000011167	ENSCABG00000011170	ENSCABG00000011175	ENSCABG00000011189	CLCF1 (ENSCABG00000011191) #18	RAD9A (ENSCABG00000011193) #16	PPP1CA (ENSCABG00000011195) #19	TBC1D10C (ENSCABG00000011199) #20	ENSCABG00000011268	RPS6KB2 (ENSCABG00000011289) #22	PTPRCAP (ENSCABG00000011968) #23	ENSCABG00000011969 #24	ENSCABG00000011972 #24	GPR152 (ENSCABG00000011974) #25	CABP4 (ENSCABG00000011975) #26	ENSCABG00000011976	ENSCABG00000011977
Goode s thornscrub tortoise	MODERN SPECIES	18	RHOD (ENSGEVG00005006104) #10	KDM2A (ENSGEVG00005006077) #11	GRK2 (ENSGEVG00005006032) #13	ANKRD13D (ENSGEVG00005015152) #14	SSH3 (ENSGEVG00005015110) #15	ENSGEVG00005015016	POLD4 (ENSGEVG00005014964) #17	ENSGEVG00005014913	ENSGEVG00005014725	ENSGEVG00005014579	CLCF1 (ENSGEVG00005014539) #18	RAD9A (ENSGEVG00005014502) #16	PPP1CA (ENSGEVG00005014476) #19	TBC1D10C (ENSGEVG00005014444) #20	ENSGEVG00005014416	RPS6KB2 (ENSGEVG00005014347) #22	PTPRCAP (ENSGEVG00005014328) #23	CORO1B (ENSGEVG00005014295) #24	ENSGEVG00005014267 #25	ENSGEVG00005014232 #26	ENSGEVG00005014139 #25	ENSGEVG00005014083 #26	ENSGEVG00005013876	ENSGEVG00005013792 #25	ENSGEVG00005013750 ##25	OSBP (ENSGEVG00005012761)	PATL1 (ENSGEVG00005012582)	ENSGEVG00005012509	ENSGEVG00005012481	ENSGEVG00005012447	STX3 (ENSGEVG00005012412)
Chinese turtle	MODERN SPECIES	1535																RPS6KB2 (ENSPSIG00000015408) #22	PTPRCAP (ENSPSIG00000005157) #23	CORO1B (ENSPSIG00000005181) #24	ENSPSIG00000000290 #25	ENSPSIG00000000297 #25	CABP4 (ENSPSIG00000007263) #26	ACY3 (ENSPSIG00000008013)	ENSPSIG00000000310 ##25
Archosauria	ANCESTRAL SPECIES	41	ENSGT00940000163951.d	ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.c ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT00390000017281	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704
Aves	ANCESTRAL SPECIES	42		ENSGT01030000234639.A.b.d.b ##25	ENSGT01030000234639.A.b.c.e.b ##25	ENSGT01030000234639.A.b.d.a ##25	ENSGT01030000234639.A.b.c.f ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Neognathae	ANCESTRAL SPECIES	30	ENSGT01030000234639.A.b.c.f ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT01030000234639.A.b.c.f ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00950000182841.b.a.a.b.b	ENSGT01100000263572.a.a.a.b	ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.d.b ##25	ENSGT01030000234639.A.b.c.e.b ##25	ENSGT01030000234639.A.b.d.a ##25	ENSGT01030000234639.A.b.c.f ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Kakapo	MODERN SPECIES	21	ENSSHBG00005018982 ##25	ENSSHBG00005018977 ##25	ENSSHBG00005018973	ENSSHBG00005018970 ##25	ENSSHBG00005018965 ##25	ENSSHBG00005018961 ##25	ENSSHBG00005018960 ##25	ENSSHBG00005018958 ##25	ENSSHBG00005018955 ##25	KDM2A (ENSSHBG00005018940) #11	CLCF1 (ENSSHBG00005018928) #18	RAD9A (ENSSHBG00005018922) #16	PPP1CA (ENSSHBG00005018918) #19	ENSSHBG00005018910	ENSSHBG00005018902	RPS6KB2 (ENSSHBG00005018896) #22	ENSSHBG00005018890	CORO1B (ENSSHBG00005018882) #24	GPR152 (ENSSHBG00005018876) #25	CABP4 (ENSSHBG00005018871) #26	OSBP (ENSSHBG00005018853)	PATL1 (ENSSHBG00005018825)	STX3 (ENSSHBG00005018809)	MRPL16 (ENSSHBG00005018806)	ENSSHBG00005018802	ENSSHBG00005018799	ENSSHBG00005018798	ENSSHBG00005018795	BAAT (ENSSHBG00005018790)	ENSSHBG00005018775	PRPF19 (ENSSHBG00005018763)
Passeriformes	ANCESTRAL SPECIES	25	ENSGT01030000234639.A.b.c.e.a.j.b.a ##25	ENSGT01030000234639.A.b.c.e.a.j.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Great tit	MODERN SPECIES	25	ENSPMJG00000007039 ##25	ENSPMJG00000007036 ##25	ENSPMJG00000007035 ##25	RHOD (ENSPMJG00000007034) #10	KDM2A (ENSPMJG00000007031) #11	GRK2 (ENSPMJG00000007030) #13	ANKRD13D (ENSPMJG00000007025) #14	SSH3 (ENSPMJG00000007019) #15	ENSPMJG00000007016	ENSPMJG00000007014	ENSPMJG00000007012	CLCF1 (ENSPMJG00000007011) #18	RAD9A (ENSPMJG00000006996) #16	PPP1CA (ENSPMJG00000006978) #19	ENSPMJG00000006971	RPS6KB2 (ENSPMJG00000006961) #22	ENSPMJG00000006959	CORO1B (ENSPMJG00000006958) #24	CABP4 (ENSPMJG00000006951) #26	OSBP (ENSPMJG00000006948)	PATL1 (ENSPMJG00000006943)	STX3 (ENSPMJG00000006941)	MRPL16 (ENSPMJG00000006934)	ENSPMJG00000006932	CCDC86 (ENSPMJG00000006931)	BAAT (ENSPMJG00000006930)	ZP1 (ENSPMJG00000006893)	PRPF19 (ENSPMJG00000006887)	ENSPMJG00000006885	TMEM132A (ENSPMJG00000006881)	CD6 (ENSPMJG00000006875)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT01030000234639.A.b.c.e.a.j.b.a ##25	ENSGT01030000234639.A.b.c.e.a.j.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.d.b ##25	ENSGT01030000234639.A.b.d.a ##25	ENSGT00940000161731.a #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029
Passeroidea	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.d.a ##25	ENSGT01030000234639.A.b.c.e.a.j.b.a ##25	ENSGT01030000234639.A.b.c.e.a.j.a ##25	ENSGT00940000161731.b #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029
Zebra finch	MODERN SPECIES	27	ENSTGUG00000005977 ##25	ENSTGUG00000005978 #10	KDM2A (ENSTGUG00000005980) #11	ENSTGUG00000020335 ##25	ENSTGUG00000028025 #10	GRK2 (ENSTGUG00000006012) #13	ANKRD13D (ENSTGUG00000006094) #14	SSH3 (ENSTGUG00000024239) #15	ENSTGUG00000021475	ENSTGUG00000006113	ENSTGUG00000006114	CLCF1 (ENSTGUG00000021220) #18	RAD9A (ENSTGUG00000019902) #16	PPP1CA (ENSTGUG00000006149) #19	ENSTGUG00000019259	RPS6KB2 (ENSTGUG00000006119) #22	ENSTGUG00000021108	CABP4 (ENSTGUG00000022413) #26	OSBP (ENSTGUG00000006213)	PATL1 (ENSTGUG00000006222)	STX3 (ENSTGUG00000006244)	MRPL16 (ENSTGUG00000006277)	ENSTGUG00000006278	CCDC86 (ENSTGUG00000006282)	BAAT (ENSTGUG00000018509)	ENSTGUG00000006283	PRPF19 (ENSTGUG00000006319)	TMEM109 (ENSTGUG00000006345)	TMEM132A (ENSTGUG00000006351)	ENSTGUG00000006362	ENSTGUG00000006369
Flycatcher	MODERN SPECIES	24	ENSFALG00000027414 ##25	ENSFALG00000025433 ##25	ENSFALG00000023990 ##25	ENSFALG00000025035 ##25	RHOD (ENSFALG00000012398) #10	KDM2A (ENSFALG00000012392) #11	GRK2 (ENSFALG00000012347) #13	SSH3 (ENSFALG00000012276) #15	POLD4 (ENSFALG00000027860) #17	ENSFALG00000012256	ENSFALG00000012239	CLCF1 (ENSFALG00000012231) #18	RAD9A (ENSFALG00000012227) #16	CORO1B (ENSFALG00000012176) #24	ENSFALG00000012202	RPS6KB2 (ENSFALG00000012189) #22	ENSFALG00000026285 #26	OSBP (ENSFALG00000012165)	PATL1 (ENSFALG00000012150)	STX3 (ENSFALG00000012131)	MRPL16 (ENSFALG00000012123)	ENSFALG00000012120	CCDC86 (ENSFALG00000028475)	ENSFALG00000012107	ZP1 (ENSFALG00000012091)	PRPF19 (ENSFALG00000012084)	TMEM109 (ENSFALG00000012077)	TMEM132A (ENSFALG00000012067)	ENSFALG00000024710	ENSFALG00000012049	VPS37C (ENSFALG00000012043)
Galloanserae	ANCESTRAL SPECIES	30	ENSGT01030000234639.A.b.c.f ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000161731 #10	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00940000163951.c.b.b	ENSGT01030000234639.A.b.d.b ##25	ENSGT01030000234639.A.b.c.e.b ##25	ENSGT01030000234639.A.b.d.a ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031.m #24	ENSGT00940000159031.n #24	ENSGT01030000234639.B #25	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Phasianidae_b	ANCESTRAL SPECIES	34		ENSGT01030000234639.A.b.d.b ##25	ENSGT01030000234639.A.b.c.e.b ##25	ENSGT01030000234639.A.b.d.a ##25	ENSGT01030000234639.A.b.c.e.a ##25	ENSGT00940000155484 #11	ENSGT00940000161626 #13	ENSGT00950000182928.A.a.b #14	ENSGT00940000160322 #15	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C #18	ENSGT00390000005767.a #16	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031.m #24	ENSGT00940000161468 #26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029	ENSGT00940000167155
Chicken	MODERN SPECIES	34	MRGPRH (ENSGALG00010022270) ##25	ENSGALG00010022294 ##25	ENSGALG00010022313 ##25	ENSGALG00010022322 ##25	ENSGALG00010022339	KDM2A (ENSGALG00010023166) #11	GRK2 (ENSGALG00010023175) #13	ANKRD13D (ENSGALG00010024205) #14	SSH3 (ENSGALG00010023218) #15	POLD4 (ENSGALG00010023262) #17	ENSGALG00010023397	CLCF1 (ENSGALG00010023466) #18	RAD9A (ENSGALG00010022504) #16	PPP1CA (ENSGALG00010022526) #19	CARNS1 (ENSGALG00010022409)	RPS6KB2 (ENSGALG00010022422) #22	CORO1B (ENSGALG00010022481) #24	CABP4 (ENSGALG00010020334) #26	OSBP (ENSGALG00010020336)	PATL1 (ENSGALG00010020343)	STX3 (ENSGALG00010020356)	MRPL16 (ENSGALG00010020364)	ENSGALG00010024137	MS4A4A (ENSGALG00010020373)	BAAT (ENSGALG00010020383)	ENSGALG00010020417	PRPF19 (ENSGALG00010020449)	TMEM109 (ENSGALG00010020473)	TMEM132A (ENSGALG00010020476)	CD6 (ENSGALG00010019520)	CD5 (ENSGALG00010019580)
Turkey	MODERN SPECIES	1198												ENSMGAG00000016571	CLCF1 (ENSMGAG00000022283) #18	ENSMGAG00000018768	ENSMGAG00000016041	RPS6KB2 (ENSMGAG00000004389) #22	CORO1B (ENSMGAG00000004385) #24	CABP4 (ENSMGAG00000006595) #26	ENSMGAG00000004932
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Duck	MODERN SPECIES	1975																RPS6KB2 (ENSAPLG00000025888) #22
African ostrich	MODERN SPECIES	1001																RPS6KB2 (ENSSCUG00000013439) #22	CORO1B (ENSSCUG00000013462) #24	CABP4 (ENSSCUG00000013465) #26	OSBP (ENSSCUG00000013467)	PATL1 (ENSSCUG00000013472)	MRPL16 (ENSSCUG00000013476)	ENSSCUG00000013478	ENSSCUG00000013482	ENSSCUG00000013487	BAAT (ENSSCUG00000013489)	ZP1 (ENSSCUG00000013490)	PRPF19 (ENSSCUG00000013502)	TMEM109 (ENSSCUG00000013511)
Australian saltwater crocodile	MODERN SPECIES	21	ENSCPRG00005012130	KDM2A (ENSCPRG00005012193) #11	GRK2 (ENSCPRG00005012206) #13	ANKRD13D (ENSCPRG00005012212) #14	SSH3 (ENSCPRG00005012220) #15	ENSCPRG00005012230	ENSCPRG00005012236	ENSCPRG00005012242	ENSCPRG00005012250	ENSCPRG00005012272	CLCF1 (ENSCPRG00005012283) #18	RAD9A (ENSCPRG00005012286) #16	PPP1CA (ENSCPRG00005012292) #19	TBC1D10C (ENSCPRG00005012314) #20	ENSCPRG00005012350	RPS6KB2 (ENSCPRG00005012355) #22	PTPRCAP (ENSCPRG00005012359) #23	CORO1B (ENSCPRG00005012364) #24	CABP4 (ENSCPRG00005012368) #26	ACY3 (ENSCPRG00005012373)	OSBP (ENSCPRG00005012387)	PATL1 (ENSCPRG00005012480)	ENSCPRG00005012828	ENSCPRG00005012847	ENSCPRG00005012867	ENSCPRG00005012874
Coelacanth	MODERN SPECIES	2400															aldh3b1 (ENSLACG00000008281)	ENSLACG00000007348 #22	NDUFV1 (ENSLACG00000006744) #35	ENSLACG00000005648	LRRC55 (ENSLACG00000003281)	ENSLACG00000001614	ENSLACG00000000717
Actinopterygii	ANCESTRAL SPECIES	205										ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00530000063506.A	ENSGT00940000153246.a.a.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721
Neopterygii	ANCESTRAL SPECIES	2										ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000155062.a #22	ENSGT00740000117056	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000167088	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372
Osteoglossocephalai	ANCESTRAL SPECIES	76	ENSGT00390000017246	ENSGT00950000182938.b.b.b.a.b.a	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000001733	ENSGT00390000016307	ENSGT00950000182924.B.a.a	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00980000199739	ENSGT00730000111690.B	ENSGT00520000055649.a	ENSGT00740000117056	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000167088	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000016264
Clupeocephala	ANCESTRAL SPECIES	486														ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00730000111690.B.g	ENSGT00520000055649.a
Euteleosteomorpha	ANCESTRAL SPECIES	382														ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01100000263527.b.b.a.a.b	ENSGT00730000111690.B.g	ENSGT00520000055649.a
Acanthomorphata	ANCESTRAL SPECIES	163	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00990000204792	ENSGT00940000163299.B.b.b	ENSGT00940000155987.b	ENSGT00940000157963	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01060000249351
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00390000011081.q.a	ENSGT01030000234532.B.e.a.a.b	ENSGT00390000002721	ENSGT01050000244891.B	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01060000249351
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Tiger tail seahorse	MODERN SPECIES	282	ENSHCOG00000001738	fbxo8 (ENSHCOG00000001746)	hand2 (ENSHCOG00000001752)	GPM6A (ENSHCOG00000001758)	ENSHCOG00000001764	GLRA3 (ENSHCOG00000001778)	wdr17 (ENSHCOG00000001805)	hmgb2a (ENSHCOG00000001815)	pmm2 (ENSHCOG00000001822)	mtmr7b (ENSHCOG00000001833)	ENSHCOG00000001844	ENSHCOG00000001854	ENSHCOG00000001869	patl1 (ENSHCOG00000001898)	ENSHCOG00000001913	RPS6KB2 (ENSHCOG00000001946) #22	ENSHCOG00000001961	ENSHCOG00000001963	ENSHCOG00000001978	ENSHCOG00000001988	ENSHCOG00000002010	ENSHCOG00000002019	neurl1aa (ENSHCOG00000002024)	SH3PXD2A (ENSHCOG00000002037)	stn1 (ENSHCOG00000002048)	SLK (ENSHCOG00000002060)	aplnrb (ENSHCOG00000002072)	SMIM26 (ENSHCOG00000002079)	dtd1 (ENSHCOG00000002105)	SLC24A3 (ENSHCOG00000002123)	RIN2 (ENSHCOG00000002148)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Tetraodontidae	ANCESTRAL SPECIES	34													ENSGT00940000158105	ENSGT00390000013419	ENSGT00390000003049.b.a	ENSGT00940000155062.a #22	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198753	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.d	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b
Tetraodon	MODERN SPECIES	10	FBXO10 (ENSTNIG00000017811)	ENSTNIG00000017810	camk2d2 (ENSTNIG00000017809)	ENSTNIG00000017807	ENSTNIG00000017808	hpf1 (ENSTNIG00000017806)	ppp2r2ca (ENSTNIG00000017805)	WFS1 (ENSTNIG00000017804)	crmp1 (ENSTNIG00000017803)	ENSTNIG00000001129	ENSTNIG00000017802	vps37c (ENSTNIG00000017801)	ENSTNIG00000017800	ENSTNIG00000017799	ndufs8a (ENSTNIG00000001102)	RPS6KB2 (ENSTNIG00000017798) #22	ENSTNIG00000003748	neurl1aa (ENSTNIG00000014164)	SH3PXD2A (ENSTNIG00000014163)	stn1 (ENSTNIG00000014162)	slkb (ENSTNIG00000014161)	ENSTNIG00000014160	dtd1 (ENSTNIG00000014159)	SLC24A3 (ENSTNIG00000014158)	RIN2 (ENSTNIG00000014157)	EEF1A1 (ENSTNIG00000014156)	ENSTNIG00000014155	RIMS1 (ENSTNIG00000014154)	krt97 (ENSTNIG00000014153)	ENSTNIG00000014152	ENSTNIG00000014151
Fugu	MODERN SPECIES	8	ppp2r2ca (ENSTRUG00000007774)	WFS1 (ENSTRUG00000031502)	crmp1 (ENSTRUG00000006479)	ENSTRUG00000006145	vps37c (ENSTRUG00000006049)	ENSTRUG00000023852	ENSTRUG00000026670	ENSTRUG00000029491	stx3a (ENSTRUG00000005789)	kdm2aa (ENSTRUG00000005339) #11	spcs3 (ENSTRUG00000029852)	ENSTRUG00000020693	galnt7 (ENSTRUG00000004719)	saraf (ENSTRUG00000004686)	ndufs8a (ENSTRUG00000004480)	RPS6KB2 (ENSTRUG00000003821) #22	ENSTRUG00000002790	ENSTRUG00000004155	neurl1aa (ENSTRUG00000010201)	SH3PXD2A (ENSTRUG00000009926)	stn1 (ENSTRUG00000009766)	slkb (ENSTRUG00000009332)	ENSTRUG00000030764	SMIM26 (ENSTRUG00000023360)	dtd1 (ENSTRUG00000009122)	SLC24A3 (ENSTRUG00000008760)	RIN2 (ENSTRUG00000008617)	ENSTRUG00000008301	RIMS1 (ENSTRUG00000008061)	krt97 (ENSTRUG00000007514)	ENSTRUG00000006989
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Ballan wrasse	MODERN SPECIES	124																RPS6KB2 (ENSLBEG00000009739) #22	ENSLBEG00000009717	ENSLBEG00000009708	ENSLBEG00000009573	ENSLBEG00000009449	neurl1aa (ENSLBEG00000009389)	SH3PXD2A (ENSLBEG00000009293)	stn1 (ENSLBEG00000009231)	slkb (ENSLBEG00000009202)	dtd1 (ENSLBEG00000009154)	SLC24A3 (ENSLBEG00000009089)	RIN2 (ENSLBEG00000009046)	ENSLBEG00000008998	ENSLBEG00000008974	EEF1A1 (ENSLBEG00000008936)	ENSLBEG00000008809
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00390000011272	ENSGT00390000003049.b.a	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Gilthead seabream	MODERN SPECIES		ENSSAUG00010001464	IGFBP4 (ENSSAUG00010001470)	SMARCE1 (ENSSAUG00010001477)	ccr7 (ENSSAUG00010001767)	TNS4 (ENSSAUG00010001774)	KRT222 (ENSSAUG00010001784)	krt97 (ENSSAUG00010001794)	RIMS1 (ENSSAUG00010001933)	ENSSAUG00010005554	EEF1A1 (ENSSAUG00010006843)	RIN2 (ENSSAUG00010006846)	SLC24A3 (ENSSAUG00010006850)	dtd1 (ENSSAUG00010006855)	ENSSAUG00010006857	ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075) #22	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208)	dctd (ENSSAUG00010013206)	dctd (ENSSAUG00010013210)	dctd (ENSSAUG00010013213)	TENM3 (ENSSAUG00010013265)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000163514.C	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Large yellow croaker	MODERN SPECIES		ENSLCRG00005017034	ENSLCRG00005017033	ENSLCRG00005017032	ENSLCRG00005017031	ENSLCRG00005017028	ENSLCRG00005017013	ENSLCRG00005017005	DIAPH1 (ENSLCRG00005015452)	ENSLCRG00005015437	TRPC7 (ENSLCRG00005015318)	ENSLCRG00005015313	DOCK2 (ENSLCRG00005014555)	VPS13D (ENSLCRG00005011523)	slc38a5b (ENSLCRG00005009664)	ENSLCRG00005009622	RPS6KB2 (ENSLCRG00005009003) #22	ENSLCRG00005008999	ENSLCRG00005008997	ENSLCRG00005007789	ENSLCRG00005007768	ENSLCRG00005005434	neurl1aa (ENSLCRG00005005390)	SH3PXD2A (ENSLCRG00005005384)	stn1 (ENSLCRG00005005380)	slkb (ENSLCRG00005002201)	ENSLCRG00005002151	ENSLCRG00005002149	SMIM26 (ENSLCRG00005002148)	dtd1 (ENSLCRG00005002147)	SLC24A3 (ENSLCRG00005002139)	RIN2 (ENSLCRG00005002138)
European seabass	MODERN SPECIES	20	wdr17 (ENSDLAG00005012661)	ENSDLAG00005029916	ENSDLAG00005033937	ENSDLAG00005014026	ENSDLAG00005014095	ENSDLAG00005014121	ENSDLAG00005030996	ENSDLAG00005014143	ENSDLAG00005032477	ENSDLAG00005028830	ENSDLAG00005028439	ENSDLAG00005017418	ENSDLAG00005029797	ENSDLAG00005032965	ENSDLAG00005014236	ENSDLAG00005014448 #22	ENSDLAG00005014739	ENSDLAG00005014751	ENSDLAG00005029910	ENSDLAG00005029141	ENSDLAG00005030943	ENSDLAG00005014805	ENSDLAG00005014887	ENSDLAG00005006423	ENSDLAG00005003059	ENSDLAG00005014976	neurl1aa (ENSDLAG00005018019)	ENSDLAG00005018046	SLK (ENSDLAG00005018450)	ENSDLAG00005030620	DTD1 (ENSDLAG00005033950)
Perciformes	ANCESTRAL SPECIES	2															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01030000234934.f	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT01020000230351.B.j.a	ENSGT00390000005096 #17	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000158942.a	ENSGT00950000183012.A.b
Lumpfish	MODERN SPECIES		wdr17 (ENSCLMG00005018275)	ENSCLMG00005018277	ENSCLMG00005018279	ENSCLMG00005018282	ENSCLMG00005018285	ENSCLMG00005018286	TESK1 (ENSCLMG00005018287)	TMX2 (ENSCLMG00005018288)	ENSCLMG00005018290	p2rx3b (ENSCLMG00005018292)	ENSCLMG00005018331	pold4 (ENSCLMG00005018333) #17	ENSCLMG00005018361	slc43a1b (ENSCLMG00005019621)	ENSCLMG00005019628	RPS6KB2 (ENSCLMG00005019638) #22	ENSCLMG00005019747	ENSCLMG00005019750	ENSCLMG00005019770	ENSCLMG00005019835	neurl1aa (ENSCLMG00005019836)	SH3PXD2A (ENSCLMG00005019839)	stn1 (ENSCLMG00005019841)	slkb (ENSCLMG00005019844)	ENSCLMG00005019848	dtd1 (ENSCLMG00005019851)	SLC24A3 (ENSCLMG00005019855)	RIN2 (ENSCLMG00005019858)	ENSCLMG00005019860	vps37c (ENSCLMG00005019863)	ENSCLMG00005019865
Stickleback	MODERN SPECIES	4	dctd (ENSGACG00000016400)	TENM3 (ENSGACG00000016390)	vegfc (ENSGACG00000016386)	ENSGACG00000016383	ENSGACG00000016382	ENSGACG00000016379	ENSGACG00000016377	ENSGACG00000016375	TESK1 (ENSGACG00000016374)	tmx2b (ENSGACG00000016364)	zdhhc5a (ENSGACG00000016361)	p2rx3b (ENSGACG00000016347)	ENSGACG00000016342	slc43a1b (ENSGACG00000016335)	ENSGACG00000016328	RPS6KB2 (ENSGACG00000016324) #22	ENSGACG00000016322	ENSGACG00000016319	neurl1aa (ENSGACG00000016316)	SH3PXD2A (ENSGACG00000016310)	stn1 (ENSGACG00000016306)	slkb (ENSGACG00000016303)	ENSGACG00000016293	SMIM26 (ENSGACG00000016292)	dtd1 (ENSGACG00000016291)	SLC24A3 (ENSGACG00000016278)	RIN2 (ENSGACG00000016274)	ENSGACG00000016272	vps37c (ENSGACG00000016269)	ENSGACG00000016267	tmem176 (ENSGACG00000016266)
Perciformes_a	ANCESTRAL SPECIES																ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01030000234934.f	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Pike perch	MODERN SPECIES	14	ARHGAP42 (ENSSLUG00000001065)	cntn5 (ENSSLUG00000001094)	FBXO40 (ENSSLUG00000001101)	ttc36 (ENSSLUG00000001107)	ENSSLUG00000001110	ENSSLUG00000001115	fat3a (ENSSLUG00000001164)	ENSSLUG00000001215	ENSSLUG00000001217	ENSSLUG00000001220	GAL3ST2 (ENSSLUG00000001225)	ENSSLUG00000001232	ENSSLUG00000001238	kcnj13 (ENSSLUG00000001243)	efhd1 (ENSSLUG00000001244)	RPS6KB2 (ENSSLUG00000001259) #22	ENSSLUG00000001295	ENSSLUG00000001297	ENSSLUG00000001300	ENSSLUG00000001302	ENSSLUG00000001304	ENSSLUG00000001311	ENSSLUG00000001323	ENSSLUG00000001325	ENSSLUG00000001327	ENSSLUG00000001332
Channel bull blenny	MODERN SPECIES		ADISSP (ENSCGOG00000007559)	ENSCGOG00000007556	tmx2b (ENSCGOG00000007447)	zdhhc5a (ENSCGOG00000007444)	slc43a1b (ENSCGOG00000007195)	ENSCGOG00000001541	pold4 (ENSCGOG00000001322) #17	p2rx3b (ENSCGOG00000001240)	ENSCGOG00000001230	chchd10 (ENSCGOG00000001225)	ddt (ENSCGOG00000001222)	gstt1b (ENSCGOG00000001216)	ENSCGOG00000001214	ENSCGOG00000001213	ENSCGOG00000001186	RPS6KB2 (ENSCGOG00000001028) #22	ENSCGOG00000001009	ENSCGOG00000001008	ENSCGOG00000000905	ENSCGOG00000000608	neurl1aa (ENSCGOG00000016424)	SH3PXD2A (ENSCGOG00000016358)	stn1 (ENSCGOG00000016351)	slkb (ENSCGOG00000014887)	ENSCGOG00000014863	SLC24A3 (ENSCGOG00000014741)	RIN2 (ENSCGOG00000014735)	ENSCGOG00000014734	EEF1A1 (ENSCGOG00000013916)	ENSCGOG00000013545	RIMS1 (ENSCGOG00000012729)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Carangaria	ANCESTRAL SPECIES		ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b
Pleuronectoidei	ANCESTRAL SPECIES	22				ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.d	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Turbot	MODERN SPECIES	20	ENSSMAG00000008085	ENSSMAG00000021981	gcdha (ENSSMAG00000008177)	acp5a (ENSSMAG00000008214)	ilf3a (ENSSMAG00000008244)	ptger1a (ENSSMAG00000008320)	ENSSMAG00000023192	ENSSMAG00000008367	ENSSMAG00000009345	ENSSMAG00000009373	ENSSMAG00000009404	ENSSMAG00000009459	ENSSMAG00000009482	ENSSMAG00000009548	ENSSMAG00000009570	ENSSMAG00000009624 #22	ENSSMAG00000009667	ENSSMAG00000009691	ENSSMAG00000009768	neurl1aa (ENSSMAG00000009853)	SH3PXD2A (ENSSMAG00000009908)	stn1 (ENSSMAG00000010029)	SLK (ENSSMAG00000010057)	ENSSMAG00000010117	DTD1 (ENSSMAG00000037240)	SLC24A3 (ENSSMAG00000010158)	RIN2 (ENSSMAG00000010253)	ENSSMAG00000010287	ENSSMAG00000010349	ENSSMAG00000010378	ENSSMAG00000010490
Tongue sole	MODERN SPECIES	19	zgc:172091 (ENSCSEG00000008002)	slc25a10b (ENSCSEG00000008008)	ENSCSEG00000008027	nanos3 (ENSCSEG00000008032)	crb3b (ENSCSEG00000008038)	slc26a11 (ENSCSEG00000008050)	sgsh (ENSCSEG00000008106)	sgsh (ENSCSEG00000008128)	npb (ENSCSEG00000008163)	SIRT7 (ENSCSEG00000008179)	pcyt2 (ENSCSEG00000008194)	ENSCSEG00000008237	ENSCSEG00000008248	patl1 (ENSCSEG00000008261)	ENSCSEG00000008288	RPS6KB2 (ENSCSEG00000008322) #22	ENSCSEG00000008336	ENSCSEG00000009670	ENSCSEG00000009703	ENSCSEG00000009714	SMARCA4 (ENSCSEG00000009723)	ENSCSEG00000009760	atg4da (ENSCSEG00000009774)	MAST1 (ENSCSEG00000009799)	rnaseh2a (ENSCSEG00000009842)	SOX10 (ENSCSEG00000009865)	ENSCSEG00000009882	ENSCSEG00000009951	ENSCSEG00000009965	ENSCSEG00000009983	ENSCSEG00000010002
Carangaria_A	ANCESTRAL SPECIES	62															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	261	gria2a (ENSLCAG00010007982)	GPM6A (ENSLCAG00010008112)	ENSLCAG00010008120	glra3 (ENSLCAG00010008149)	hpgd (ENSLCAG00010008272)	wdr17 (ENSLCAG00010008315)	hmgb2a (ENSLCAG00010008345)	pmm2 (ENSLCAG00010008352)	mtmr7b (ENSLCAG00010008364)	ENSLCAG00010008382	ENSLCAG00010008413	patl1 (ENSLCAG00010008420)	ENSLCAG00010008436	ENSLCAG00010008444	ENSLCAG00010008453	RPS6KB2 (ENSLCAG00010008505) #22	ENSLCAG00010008792	ENSLCAG00010008804	ENSLCAG00010008859
Barramundi perch	MODERN SPECIES	464						ENSLCAG00010012091	ENSLCAG00010012095	ENSLCAG00010012109	AXIN1 (ENSLCAG00010012115)	ERI2 (ENSLCAG00010012125)	thumpd1 (ENSLCAG00010012137)	ENSLCAG00010012141	parn (ENSLCAG00010012153)	ELFN1 (ENSLCAG00010012168)	mad1l1 (ENSLCAG00010012179)	RPS6KB2 (ENSLCAG00010012206) #22
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263476.B.b.a.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00860000134050	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00980000200302	ENSGT00940000157122.b.b
Greater amberjack	MODERN SPECIES	20	ENSSDUG00000004923	RIN2 (ENSSDUG00000004936)	SLC24A3 (ENSSDUG00000004963)	dtd1 (ENSSDUG00000005018)	SMIM26 (ENSSDUG00000005036)	slkb (ENSSDUG00000005052)	stn1 (ENSSDUG00000005081)	SH3PXD2A (ENSSDUG00000005118)	neurl1aa (ENSSDUG00000005144)	ENSSDUG00000005183	ENSSDUG00000005227	ENSSDUG00000005271	ENSSDUG00000005281	ENSSDUG00000005296	ENSSDUG00000005305	RPS6KB2 (ENSSDUG00000005315) #22	patl1 (ENSSDUG00000005362)	dctd (ENSSDUG00000005434)	ENSSDUG00000005449	ENSSDUG00000005488	ENSSDUG00000005523	ENSSDUG00000005531	mtmr7b (ENSSDUG00000005550)	pmm2 (ENSSDUG00000005606)	hmgb2a (ENSSDUG00000005632)	ENSSDUG00000005654
Yellowtail amberjack	MODERN SPECIES	3209				ENSSLDG00000018440	RIN2 (ENSSLDG00000018455)	SLC24A3 (ENSSLDG00000018479)	dtd1 (ENSSLDG00000018545)	slkb (ENSSLDG00000018565)	stn1 (ENSSLDG00000018589)	SH3PXD2A (ENSSLDG00000018642)	neurl1aa (ENSSLDG00000018741)	ENSSLDG00000018786	ENSSLDG00000018868	ENSSLDG00000018916	ENSSLDG00000018968	RPS6KB2 (ENSSLDG00000019011) #22	ENSSLDG00000019108	patl1 (ENSSLDG00000019146)	ENSSLDG00000019241	ENSSLDG00000019262	mtmr7b (ENSSLDG00000019287)	pmm2 (ENSSLDG00000019311)	hmgb2a (ENSSLDG00000019332)	wdr17 (ENSSLDG00000019354)	hpgd (ENSSLDG00000019409)	glra3 (ENSSLDG00000019421)	ENSSLDG00000019437	GPM6A (ENSSLDG00000019455)	gria2a (ENSSLDG00000019507)	GLRB (ENSSLDG00000019634)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00980000201148	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B.l	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Zig-zag eel	MODERN SPECIES		hand2 (ENSMAMG00000003557)	ENSMAMG00000028518	ENSMAMG00000003580	ENSMAMG00000026834	ENSMAMG00000027721	glra3 (ENSMAMG00000003626)	hpgd (ENSMAMG00000026813)	wdr17 (ENSMAMG00000003713)	ENSMAMG00000003816	ENSMAMG00000003832	ENSMAMG00000003860	ENSMAMG00000003905	ENSMAMG00000003950	ENSMAMG00000004038	ENSMAMG00000004063	ENSMAMG00000004097 #22	ENSMAMG00000004196	ENSMAMG00000004218	ENSMAMG00000004269	neurl1aa (ENSMAMG00000004358)	SH3PXD2A (ENSMAMG00000004389)	stn1 (ENSMAMG00000004419)	SLK (ENSMAMG00000004440)	SMIM26 (ENSMAMG00000004480)	DTD1 (ENSMAMG00000028550)	SLC24A3 (ENSMAMG00000004489)	RIN2 (ENSMAMG00000004527)	ENSMAMG00000007730	ENSMAMG00000004581	ENSMAMG00000004685	ENSMAMG00000004898
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00980000201148	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B.k	ENSGT00940000156696.B.l	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Climbing perch	MODERN SPECIES		ENSATEG00000002567	ENSATEG00000002531	ENSATEG00000002518	ENSATEG00000002482	ENSATEG00000002444	wdr17 (ENSATEG00000002342)	ENSATEG00000002324	ENSATEG00000002288	ENSATEG00000002240	ENSATEG00000002237	ENSATEG00000002230	ENSATEG00000002193	ENSATEG00000002144	ENSATEG00000002122	ENSATEG00000002070	ENSATEG00000002017 #22	ENSATEG00000002013	ENSATEG00000001890	ENSATEG00000001759	ENSATEG00000001724	neurl1aa (ENSATEG00000001684)	SH3PXD2A (ENSATEG00000001601)	stn1 (ENSATEG00000001592)	SLK (ENSATEG00000001585)	ENSATEG00000001557	DTD1 (ENSATEG00000029992)	SLC24A3 (ENSATEG00000001443)	RIN2 (ENSATEG00000001431)	ENSATEG00000026801	ENSATEG00000001388	ENSATEG00000001300
Siamese fighting fish	MODERN SPECIES		tmx2b (ENSBSLG00000023146)	TESK1 (ENSBSLG00000023178)	ADISSP (ENSBSLG00000023218)	ENSBSLG00000023229	ENSBSLG00000023239	ENSBSLG00000023248	TFAP4 (ENSBSLG00000023258)	SRL (ENSBSLG00000023269)	ADCY9 (ENSBSLG00000023274)	CREBBP (ENSBSLG00000023331)	ENSBSLG00000024262	mcrip2 (ENSBSLG00000024265)	gde1 (ENSBSLG00000024268)	tmem186 (ENSBSLG00000024270)	ENSBSLG00000024282	RPS6KB2 (ENSBSLG00000024359) #22	ENSBSLG00000024920	ENSBSLG00000024928	ENSBSLG00000024935	ENSBSLG00000005070	ENSBSLG00000007057	ENSBSLG00000009265	ENSBSLG00000009275	neurl1aa (ENSBSLG00000009287)	SH3PXD2A (ENSBSLG00000009349)	stn1 (ENSBSLG00000009367)	slkb (ENSBSLG00000009441)	dtd1 (ENSBSLG00000011467)	SLC24A3 (ENSBSLG00000011681)	RIN2 (ENSBSLG00000011909)	ENSBSLG00000011966
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000175285	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Atherinomorphae	ANCESTRAL SPECIES	53																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655
Indian medaka	MODERN SPECIES	21	ENSOMEG00000021726	elf2b (ENSOMEG00000021691)	NOCT (ENSOMEG00000021625)	ENSOMEG00000021602	ENSOMEG00000021588	slc43a3a (ENSOMEG00000021570)	dctd (ENSOMEG00000021534)	TENM3 (ENSOMEG00000021448)	ENSOMEG00000021371	vegfc (ENSOMEG00000021355)	ENSOMEG00000021322	ENSOMEG00000000562	ENSOMEG00000021246	ENSOMEG00000021220	ENSOMEG00000021212	RPS6KB2 (ENSOMEG00000021168) #22	ENSOMEG00000021107	ENSOMEG00000021072	ENSOMEG00000020906	neurl1aa (ENSOMEG00000020787)	SH3PXD2A (ENSOMEG00000020700)	slkb (ENSOMEG00000020542)	stn1 (ENSOMEG00000020439)	ENSOMEG00000020399	dtd1 (ENSOMEG00000020384)	SLC24A3 (ENSOMEG00000020364)	RIN2 (ENSOMEG00000020275)	ENSOMEG00000020245	ENSOMEG00000020175	RIMS1 (ENSOMEG00000019970)	krt97 (ENSOMEG00000019636)
Javanese ricefish	MODERN SPECIES		naa15b (ENSOJAG00000022103)	RAB33B (ENSOJAG00000022099)	elf2b (ENSOJAG00000022092)	NOCT (ENSOJAG00000022083)	ENSOJAG00000022075	ENSOJAG00000022066	dctd (ENSOJAG00000022053)	atf1 (ENSOJAG00000022043)	TENM3 (ENSOJAG00000019297)	vegfc (ENSOJAG00000018818)	ENSOJAG00000018807	ENSOJAG00000018795	ENSOJAG00000018773	ENSOJAG00000018743	ENSOJAG00000018416	RPS6KB2 (ENSOJAG00000017187) #22	ENSOJAG00000017045	ENSOJAG00000016816	ENSOJAG00000016780	ENSOJAG00000016384	neurl1aa (ENSOJAG00000016314)	SH3PXD2A (ENSOJAG00000016104)	stn1 (ENSOJAG00000016081)	slkb (ENSOJAG00000014646)	dtd1 (ENSOJAG00000014567)	SLC24A3 (ENSOJAG00000014331)	RIN2 (ENSOJAG00000014046)	ENSOJAG00000013990	ENSOJAG00000013977	ENSOJAG00000013760	RIMS1 (ENSOJAG00000012649)
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000002071	elf2b (ENSORLG00000002091)	NOCT (ENSORLG00000002100)	ENSORLG00000023189	slc43a3a (ENSORLG00000002116)	dctd (ENSORLG00000002127)	ENSORLG00000002165	vegfc (ENSORLG00000002180)	ENSORLG00000029382	ENSORLG00000002191	ENSORLG00000022778	ENSORLG00000002209	ENSORLG00000028979	ENSORLG00000002249	ENSORLG00000023252	RPS6KB2 (ENSORLG00000002272) #22	ENSORLG00000027842	ENSORLG00000026236	ENSORLG00000030303	ENSORLG00000029043	ENSORLG00000028680	ENSORLG00000026615	ENSORLG00000026837	neurl1aa (ENSORLG00000002316)	SH3PXD2A (ENSORLG00000002337)	stn1 (ENSORLG00000002353)	slkb (ENSORLG00000002380)	dtd1 (ENSORLG00000002441)	SLC24A3 (ENSORLG00000002454)	RIN2 (ENSORLG00000002466)	ENSORLG00000028162
Chinese medaka	MODERN SPECIES	218	naa15b (ENSOSIG00000005351)	RAB33B (ENSOSIG00000007092)	elf2b (ENSOSIG00000007093)	NOCT (ENSOSIG00000007097)	ENSOSIG00000007098	slc43a3a (ENSOSIG00000007099)	dctd (ENSOSIG00000007102)	TENM3 (ENSOSIG00000007174)	ENSOSIG00000016828	vegfc (ENSOSIG00000016830)	ENSOSIG00000016832	ENSOSIG00000016837	ENSOSIG00000016840	ENSOSIG00000016841	ENSOSIG00000016843	RPS6KB2 (ENSOSIG00000016911) #22	ENSOSIG00000018609
Cyprinodontiformes	ANCESTRAL SPECIES	76																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b
Cyprinodontoidei	ANCESTRAL SPECIES	24																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000175362	ENSGT00730000111912.A.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Platyfish	MODERN SPECIES	19	glra3 (ENSXMAG00000017591)	hpgd (ENSXMAG00000025441)	ENSXMAG00000022041	ENSXMAG00000022980	hmgb2a (ENSXMAG00000012281)	pmm2 (ENSXMAG00000012252)	mtmr7b (ENSXMAG00000012190)	ENSXMAG00000027108	ENSXMAG00000024644	patl1 (ENSXMAG00000013834)	ENSXMAG00000029189	ENSXMAG00000007906	ENSXMAG00000027685	ENSXMAG00000010145	DTX4 (ENSXMAG00000028593)	RPS6KB2 (ENSXMAG00000004706) #22	ENSXMAG00000026114	ENSXMAG00000027118	ENSXMAG00000022733	ENSXMAG00000010459	ENSXMAG00000010410	neurl1aa (ENSXMAG00000010401)	SH3PXD2A (ENSXMAG00000010386)	stn1 (ENSXMAG00000010374)	slkb (ENSXMAG00000010323)	SMIM26 (ENSXMAG00000010293)	dtd1 (ENSXMAG00000010278)	SLC24A3 (ENSXMAG00000010863)	RIN2 (ENSXMAG00000010264)	aimp1a (ENSXMAG00000010255)	dkk2 (ENSXMAG00000010254)
Poecilia	ANCESTRAL SPECIES	36	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000175362	ENSGT00730000111912.A.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Guppy	MODERN SPECIES	439	hmgb2a (ENSPREG00000004023)	mtmr7b (ENSPREG00000004011)	ENSPREG00000003983	ENSPREG00000003977	ENSPREG00000003915	patl1 (ENSPREG00000003874)	ENSPREG00000003856	ENSPREG00000003797	ENSPREG00000003556	ENSPREG00000003504	ENSPREG00000003463	ENSPREG00000003442	ENSPREG00000003419	ENSPREG00000003403	ENSPREG00000003372	RPS6KB2 (ENSPREG00000003303) #22	ENSPREG00000003281	ENSPREG00000003257	ENSPREG00000003119	ENSPREG00000003050	neurl1aa (ENSPREG00000003006)	SH3PXD2A (ENSPREG00000002929)	stn1 (ENSPREG00000002904)	slkb (ENSPREG00000002838)	ENSPREG00000002796	dtd1 (ENSPREG00000002775)	SLC24A3 (ENSPREG00000002750)	RIN2 (ENSPREG00000002721)	aimp1a (ENSPREG00000002704)	dkk2 (ENSPREG00000002679)	papss1 (ENSPREG00000002639)
NAME_6	ANCESTRAL SPECIES	177														ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Amazon molly	MODERN SPECIES	367																RPS6KB2 (ENSPFOG00000005547) #22	ENSPFOG00000024667	ENSPFOG00000005981	ENSPFOG00000007665	neurl1aa (ENSPFOG00000009159)	SH3PXD2A (ENSPFOG00000009258)	stn1 (ENSPFOG00000009409)	slkb (ENSPFOG00000009525)	ENSPFOG00000009887	SMIM26 (ENSPFOG00000010226)	dtd1 (ENSPFOG00000010227)	SLC24A3 (ENSPFOG00000010286)	RIN2 (ENSPFOG00000010495)	aimp1a (ENSPFOG00000010749)	dkk2 (ENSPFOG00000010805)	papss1 (ENSPFOG00000010859)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	2534																RPS6KB2 (ENSPLAG00000014571) #22	ENSPLAG00000014531
Sailfin molly	MODERN SPECIES	2967															ENSPLAG00000016093	ENSPLAG00000016108 #22
NAME_4	ANCESTRAL SPECIES	169														ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a.d	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b	ENSGT00940000157370.b
Sheepshead minnow	MODERN SPECIES	281																RPS6KB2 (ENSCVAG00000011611) #22	ENSCVAG00000011577	ENSCVAG00000011571	ENSCVAG00000011502	ENSCVAG00000011430	ENSCVAG00000011408	sms (ENSCVAG00000000303)	ENSCVAG00000011355	gabrr3a (ENSCVAG00000011341)	ENSCVAG00000011310	ENSCVAG00000011288	ENSCVAG00000011276	ENSCVAG00000011262	ENSCVAG00000011251	ENSCVAG00000011062	pcyt1bb (ENSCVAG00000011048)
Mummichog	MODERN SPECIES	985														ENSFHEG00000015914	ENSFHEG00000015925	RPS6KB2 (ENSFHEG00000016002) #22
Aplocheiloidei	ANCESTRAL SPECIES	99	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000154866.B.b	ENSGT00940000166983.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858
Mangrove rivulus	MODERN SPECIES	297												EEF1A1 (ENSKMAG00000020147)	RIN2 (ENSKMAG00000020173)	ENSKMAG00000020233	ENSKMAG00000020240	RPS6KB2 (ENSKMAG00000020276) #22	ENSKMAG00000020358	GRIK5 (ENSKMAG00000020380)	ENSKMAG00000020409	ENSKMAG00000020421	IGKV2D-30 (ENSKMAG00000020435)
Turquoise killifish	MODERN SPECIES	112												ENSNFUG00015018531	EEF1A1A (ENSNFUG00015018495)	RIN2 (ENSNFUG00015018490)	ENSNFUG00015018483	RPS6KB2 (ENSNFUG00015018480) #22	ENSNFUG00015018479
Ovalentaria_B	ANCESTRAL SPECIES	4															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Pomacentridae	ANCESTRAL SPECIES	85															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Bicolor damselfish	MODERN SPECIES	1368															ENSSPAG00000001232	RPS6KB2 (ENSSPAG00000001176) #22	ENSSPAG00000001155
Pomacentridae_A	ANCESTRAL SPECIES	13															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Spiny chromis	MODERN SPECIES	1720															ENSAPOG00000000564	RPS6KB2 (ENSAPOG00000019776) #22	ENSAPOG00000019792
Amphiprion	ANCESTRAL SPECIES																ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000180729	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000011242	ENSAPEG00000011264	pin1 (ENSAPEG00000011284)	UBL5 (ENSAPEG00000011322)	VAV1 (ENSAPEG00000011348)	ENSAPEG00000011483	TRIP10 (ENSAPEG00000011594)	ENSAPEG00000011639	ENSAPEG00000011670	OLFM2 (ENSAPEG00000011686)	ENSAPEG00000011718	ENSAPEG00000011756	ENSAPEG00000011765	ENSAPEG00000011772	ENSAPEG00000011844	RPS6KB2 (ENSAPEG00000011904) #22	ENSAPEG00000011971	ENSAPEG00000011983	ENSAPEG00000012014	ENSAPEG00000012156	ENSAPEG00000012255	neurl1aa (ENSAPEG00000012299)	SH3PXD2A (ENSAPEG00000012345)	stn1 (ENSAPEG00000012396)	slkb (ENSAPEG00000012404)	SMIM26 (ENSAPEG00000012413)	dtd1 (ENSAPEG00000012431)	SLC24A3 (ENSAPEG00000012473)	RIN2 (ENSAPEG00000012498)	ENSAPEG00000012510	ENSAPEG00000012536
Clown anemonefish	MODERN SPECIES	1867															ENSAOCG00000013360	RPS6KB2 (ENSAOCG00000013401) #22
Cichlidae	ANCESTRAL SPECIES	32	ENSGT00940000159647	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602
Midas cichlid	MODERN SPECIES	1111						ENSACIG00000005680	ENSACIG00000005649	EEF1A1 (ENSACIG00000005630)	ENSACIG00000005620	ENSACIG00000005593	RIN2 (ENSACIG00000005564)	SLC24A3 (ENSACIG00000005525)	dtd1 (ENSACIG00000005511)	ENSACIG00000005499	ENSACIG00000005467	RPS6KB2 (ENSACIG00000005433) #22	ENSACIG00000005422	ENSACIG00000005419	ENSACIG00000005361	ENSACIG00000005322
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.b	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602
Nile tilapia	MODERN SPECIES	18	ENSONIG00000009010	IGFBP4 (ENSONIG00000009007)	ENSONIG00000009004	ccr7 (ENSONIG00000030896)	KRT222 (ENSONIG00000008997)	krt97 (ENSONIG00000008991)	RIMS1 (ENSONIG00000008981)	ENSONIG00000008979	EEF1A1 (ENSONIG00000043142)	ENSONIG00000008974	RIN2 (ENSONIG00000033297)	SLC24A3 (ENSONIG00000008969)	dtd1 (ENSONIG00000030547)	ENSONIG00000042570	ENSONIG00000008963	RPS6KB2 (ENSONIG00000008956) #22	ENSONIG00000022976	ENSONIG00000008941	ENSONIG00000008935	ENSONIG00000037720	neurl1aa (ENSONIG00000008931)	SH3PXD2A (ENSONIG00000008928)	stn1 (ENSONIG00000008926)	slkb (ENSONIG00000008924)	ENSONIG00000029619	ENSONIG00000038105	ENSONIG00000038608	ENSONIG00000006729	ENSONIG00000006725	mtmr7b (ENSONIG00000006726)	ENSONIG00000034664
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00860000134050	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
Burton s mouthbrooder	MODERN SPECIES	297	ENSHBUG00000001362	ccr7 (ENSHBUG00000001358)	ENSHBUG00000001355	KRT222 (ENSHBUG00000001354)	krt97 (ENSHBUG00000001352)	RIMS1 (ENSHBUG00000001343)	ENSHBUG00000001329	EEF1A1 (ENSHBUG00000001322)	ENSHBUG00000001317	RIN2 (ENSHBUG00000001311)	SLC24A3 (ENSHBUG00000001307)	dtd1 (ENSHBUG00000001306)	ENSHBUG00000001301	SMIM26 (ENSHBUG00000001299)	ENSHBUG00000001294	RPS6KB2 (ENSHBUG00000001281) #22	ENSHBUG00000001275	ENSHBUG00000001272	ENSHBUG00000001262	neurl1aa (ENSHBUG00000001254)	SH3PXD2A (ENSHBUG00000001248)	stn1 (ENSHBUG00000001245)	slkb (ENSHBUG00000001244)	ENSHBUG00000001243
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00860000134050	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
P. nyererei	MODERN SPECIES	466	SMARCE1 (ENSPNYG00000005893)	ccr7 (ENSPNYG00000005879)	TNS4 (ENSPNYG00000005850)	KRT222 (ENSPNYG00000005823)	krt97 (ENSPNYG00000005805)	RIMS1 (ENSPNYG00000005657)	ENSPNYG00000005614	EEF1A1 (ENSPNYG00000005593)	ENSPNYG00000005450	RIN2 (ENSPNYG00000005375)	SLC24A3 (ENSPNYG00000005329)	dtd1 (ENSPNYG00000005312)	ENSPNYG00000005292	SMIM26 (ENSPNYG00000005283)	ENSPNYG00000005245	RPS6KB2 (ENSPNYG00000005173) #22	ENSPNYG00000005158	ENSPNYG00000005082	ENSPNYG00000005052
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b	ENSGT00940000177734	ENSGT00990000203954.a	ENSGT00730000111912.A.b.d.b	ENSGT00940000175362	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a.a
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005012542	ccr7 (ENSMZEG00005012551)	ENSMZEG00005012559	KRT222 (ENSMZEG00005012564)	krt97 (ENSMZEG00005012578)	RIMS1 (ENSMZEG00005012628)	ENSMZEG00005012772	EEF1A1 (ENSMZEG00005012825)	ENSMZEG00005012852	ENSMZEG00005012864	RIN2 (ENSMZEG00005012875)	SLC24A3 (ENSMZEG00005012883)	dtd1 (ENSMZEG00005012906)	ENSMZEG00005012913	ENSMZEG00005012931	RPS6KB2 (ENSMZEG00005012978) #22	ENSMZEG00005013004	ENSMZEG00005013019	ENSMZEG00005013059	neurl1aa (ENSMZEG00005013097)	SH3PXD2A (ENSMZEG00005013142)	stn1 (ENSMZEG00005013232)	slkb (ENSMZEG00005013258)	ENSMZEG00005013301	ENSMZEG00005013308	ENSMZEG00005013314	ENSMZEG00005013324	ENSMZEG00005013335	ENSMZEG00005013365	ENSMZEG00005013373	ENSMZEG00005013379
Eastern happy	MODERN SPECIES	18	ccr7 (ENSACLG00000009137)	TNS4 (ENSACLG00000009099)	krt97 (ENSACLG00000009073)	KRT222 (ENSACLG00000009030)	RIMS1 (ENSACLG00000008035)	ENSACLG00000008010	ENSACLG00000007969	EEF1A1 (ENSACLG00000007936)	ENSACLG00000007923	RIN2 (ENSACLG00000007912)	SLC24A3 (ENSACLG00000007881)	dtd1 (ENSACLG00000007875)	ENSACLG00000007869	ENSACLG00000007831	ENSACLG00000007825	RPS6KB2 (ENSACLG00000007792) #22	ENSACLG00000007591	ENSACLG00000007497	ENSACLG00000006749	ENSACLG00000006413	ENSACLG00000006294	ENSACLG00000006272	neurl1aa (ENSACLG00000006223)	SH3PXD2A (ENSACLG00000005614)	stn1 (ENSACLG00000005574)	slkb (ENSACLG00000005534)	ENSACLG00000005528	ENSACLG00000005526	ENSACLG00000005524	ENSACLG00000005516	ENSACLG00000005509
Lyretail cichlid	MODERN SPECIES	355	ENSNBRG00000016940	ENSNBRG00000016920	ccr7 (ENSNBRG00000016910)	KRT222 (ENSNBRG00000016891)	krt97 (ENSNBRG00000016868)	ENSNBRG00000016853	ENSNBRG00000016819	ENSNBRG00000016788	ENSNBRG00000016770	ENSNBRG00000016710	RIN2 (ENSNBRG00000016691)	SLC24A3 (ENSNBRG00000016662)	dtd1 (ENSNBRG00000016635)	ENSNBRG00000016612	ENSNBRG00000016601	ENSNBRG00000016589 #22	ENSNBRG00000016576	ENSNBRG00000016529	ENSNBRG00000016466	neurl1aa (ENSNBRG00000016439)	SH3PXD2A (ENSNBRG00000016394)	slkb (ENSNBRG00000016350)	ENSNBRG00000016334
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005017502	CREBBP (ENSMMDG00005017595)	ADCY9 (ENSMMDG00005019835)	SRL (ENSMMDG00005019838)	TFAP4 (ENSMMDG00005019842)	GLIS2 (ENSMMDG00005019846)	ENSMMDG00005019847	ENSMMDG00005019848	ENSMMDG00005019850	ENSMMDG00005019851	vasna (ENSMMDG00005019853)	dnaja3b (ENSMMDG00005019859)	pdgfaa (ENSMMDG00005019975)	ENSMMDG00005019976	ENSMMDG00005019978	RPS6KB2 (ENSMMDG00005019990) #22	ENSMMDG00005020399	ENSMMDG00005020405	ENSMMDG00005020408	ENSMMDG00005020410	ENSMMDG00005020412	ENSMMDG00005020414	ENSMMDG00005020417	ENSMMDG00005020432	ddt (ENSMMDG00005020509)	chchd10 (ENSMMDG00005020510)	vps37c (ENSMMDG00005020514)	ENSMMDG00005020517	ENSMMDG00005020519	TCIRG1 (ENSMMDG00005020531)	stx3a (ENSMMDG00005020547)
Cod	MODERN SPECIES	16	ENSGMOG00000014509	ENSGMOG00000004167	ENSGMOG00000023130	ENSGMOG00000022708	ENSGMOG00000012831	ENSGMOG00000023089	ENSGMOG00000034630	ENSGMOG00000023667	ENSGMOG00000030016	ENSGMOG00000024977	ENSGMOG00000033724	ENSGMOG00000032370	ENSGMOG00000035513	ENSGMOG00000030624	ENSGMOG00000007168	ENSGMOG00000000851 #22	ENSGMOG00000025010	ENSGMOG00000015347	ENSGMOG00000017694	ENSGMOG00000029935	ENSGMOG00000030257	ENSGMOG00000017627	ENSGMOG00000017601	ENDOV (ENSGMOG00000017580)	ENSGMOG00000008585	RPTOR (ENSGMOG00000013162)	ENSGMOG00000022507	ENSGMOG00000013136	ENSGMOG00000013131	ANAPC11 (ENSGMOG00000031405)	ENSGMOG00000024527
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT01070000253822.D.a.h.b	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334 #30	ENSGT00390000001289.a #28	ENSGT00390000011766 #27	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #31	ENSGT00440000033329.a.a.b	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01100000263527.b.b.a.a.b	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00390000015948.a	ENSGT00390000017452	ENSGT00940000160184.c.b	ENSGT00530000063713.b.a	ENSGT00940000159443	ENSGT00940000157511	ENSGT00940000156223	ENSGT00950000182934.a.a	ENSGT00940000160795	ENSGT01030000234543.A.a.h	ENSGT00940000161705	ENSGT01030000234543.A.a.g.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	66	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #31	ENSGT00440000033329.a.a.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a	ENSGT01050000244806.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #31	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a	ENSGT01030000234601.o	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a
Salmo	ANCESTRAL SPECIES	59	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.s.a #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.d #31	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b.a	ENSGT01050000244806.a.a.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a.a	ENSGT01030000234601.o.h	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a.b	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f
River trout	MODERN SPECIES	33	ENSSTUG00000012958	ENSSTUG00000012974	ankrd49 (ENSSTUG00000012977)	GPR83 (ENSSTUG00000012980)	ENSSTUG00000012990	ENSSTUG00000013101	ENSSTUG00000013138	cdk2ap2 (ENSSTUG00000013144) #30	aip (ENSSTUG00000013160) #28	tmem134 (ENSSTUG00000013182) #27	serping1 (ENSSTUG00000013203)	doc2d (ENSSTUG00000013241)	ENSSTUG00000013309 #31	ENSSTUG00000013327	ENSSTUG00000013340	RPS6KB2 (ENSSTUG00000013358) #22	ENSSTUG00000013851	ENSSTUG00000013860	ENSSTUG00000013888	ENSSTUG00000013904	ENSSTUG00000013915	ENSSTUG00000013947	ENSSTUG00000013985	ENSSTUG00000014010	ENSSTUG00000014029	ENSSTUG00000014077	ENSSTUG00000014088	ENSSTUG00000014094	ENSSTUG00000014104	ENSSTUG00000014111	ENSSTUG00000014116
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000094036	ENSSSAG00000096879	ENSSSAG00000093695	ENSSSAG00000090418	ENSSSAG00000118802	ENSSSAG00000063815	ENSSSAG00000063865 #30	ENSSSAG00000086675	aip (ENSSSAG00000063862) #28	ENSSSAG00000063873 #27	serping1 (ENSSSAG00000041306)	doc2d (ENSSSAG00000041354)	ENSSSAG00000041457 #31	ENSSSAG00000085583	ENSSSAG00000063939	ENSSSAG00000063963 #22	ENSSSAG00000093559	ENSSSAG00000097384	ENSSSAG00000015333	ENSSSAG00000106001	ENSSSAG00000114375	ENSSSAG00000105041	ENSSSAG00000064183	ENSSSAG00000103202	ENSSSAG00000064234	ENSSSAG00000064248	ENSSSAG00000064252	ENSSSAG00000113252	ENSSSAG00000120994	ENSSSAG00000116704	ENSSSAG00000102982
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #31	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a	ENSGT00530000063713.b.a.o	ENSGT00940000159443.g.b	ENSGT00940000157511.l
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000010607	ENSOMYG00000010516	ENSOMYG00000010441	ENSOMYG00000010305	ENSOMYG00000010235 #30	ENSOMYG00000010208 #28	ENSOMYG00000059054 #27	serping1 (ENSOMYG00000010083)	serping1 (ENSOMYG00000076828)	doc2d (ENSOMYG00000010048)	ENSOMYG00000061139	ENSOMYG00000075864 #31	ENSOMYG00000059678	ENSOMYG00000010036	ENSOMYG00000074207	ENSOMYG00000009955 #22	ENSOMYG00000009605	ENSOMYG00000069994	ENSOMYG00000057181	ENSOMYG00000047849	ENSOMYG00000009468	ENSOMYG00000061115	ENSOMYG00000008924	ENSOMYG00000067411	ENSOMYG00000008886	ENSOMYG00000008860	ENSOMYG00000057422	ENSOMYG00000060091	ENSOMYG00000008780	ENSOMYG00000008772	ENSOMYG00000050027
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #31	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234540.B.b.w	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a	ENSGT00530000063713.b.a.o	ENSGT00940000159443.g.b	ENSGT00940000157511.l
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005003103	ENSOTSG00005002803	ENSOTSG00005002792	ENSOTSG00005002683	ENSOTSG00005023496	cdk2ap2 (ENSOTSG00005023495) #30	aip (ENSOTSG00005023494) #28	tmem134 (ENSOTSG00005023492) #27	serping1 (ENSOTSG00005023487)	ENSOTSG00005023484	doc2d (ENSOTSG00005023475)	ENSOTSG00005023472 #31	ENSOTSG00005023470	ENSOTSG00005023471	ENSOTSG00005023469	RPS6KB2 (ENSOTSG00005023467) #22	ENSOTSG00005023464	ENSOTSG00005023440	ENSOTSG00005023433	ENSOTSG00005023430	ENSOTSG00005023428	ENSOTSG00005023427	ENSOTSG00005023424	ENSOTSG00005023420	ENSOTSG00005023417	ENSOTSG00005023411	ENSOTSG00005023407	ENSOTSG00005023406	patl1 (ENSOTSG00005023397)	pdcd4a (ENSOTSG00005021716)	mogs (ENSOTSG00005021715)
Coho salmon	MODERN SPECIES	3	ENSOKIG00005023805	ENSOKIG00005023786	ENSOKIG00005023774	ankrd49 (ENSOKIG00005023772)	GPR83 (ENSOKIG00005023758)	ENSOKIG00005023748	ENSOKIG00005023659	CDK2AP2 (ENSOKIG00005023637) #30	AIP (ENSOKIG00005023623) #28	ENSOKIG00005023608 #27	serping1 (ENSOKIG00005023514)	doc2d (ENSOKIG00005023418)	ENSOKIG00005023395 #31	ENSOKIG00005023381	ENSOKIG00005023373	RPS6KB2 (ENSOKIG00005023179) #22	ENSOKIG00005023150	ENSOKIG00005023132	ENSOKIG00005023106	ENSOKIG00005023026	ENSOKIG00005023011	ENSOKIG00005023006	ENSOKIG00005022995	ENSOKIG00005022974	ENSOKIG00005022956	ENSOKIG00005022884	ENSOKIG00005022778	ENSOKIG00005022742	ENSOKIG00005022700	ENSOKIG00005022641	ENSOKIG00005022613
Huchen	MODERN SPECIES	2947															ENSHHUG00000044871	RPS6KB2 (ENSHHUG00000044876) #22	ENSHHUG00000044885	ENSHHUG00000044904	ENSHHUG00000044910	ENSHHUG00000044914
Salmoninae	ANCESTRAL SPECIES	66	ENSGT01070000253822.D.a.h.b.a	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00390000019377.a.a.b.j	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #31	ENSGT00440000033329.a.a.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a	ENSGT01050000244806.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #30	ENSGT00390000001289.a.h #28	ENSGT00390000011766.e #27	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #31	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a	ENSGT01030000234601.o	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b
Salmo	ANCESTRAL SPECIES	82	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000172609	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #30	ENSGT00390000001289.a.g #28	ENSGT00390000011766.f #27	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.c #31	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.h	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT01030000234543.A.a.h.a.a	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.b.a.b	ENSGT00940000156351.l.b	ENSGT00940000156660.d	ENSGT00390000013285.g.e
River trout	MODERN SPECIES	2	ACY3 (ENSSTUG00000031191)	cldnd1b (ENSSTUG00000031183)	ENSSTUG00000031177	ENSSTUG00000031173	ENSSTUG00000031155	ENSSTUG00000031149	ENSSTUG00000031142	GPR83 (ENSSTUG00000031138)	cdk2ap2 (ENSSTUG00000031121) #30	aip (ENSSTUG00000031104) #28	tmem134 (ENSSTUG00000031098) #27	serping1 (ENSSTUG00000031094)	doc2d (ENSSTUG00000031080)	ENSSTUG00000047334 #31	ENSSTUG00000047328	RPS6KB2 (ENSSTUG00000047181) #22	ENSSTUG00000047168	ENSSTUG00000047161	ENSSTUG00000047157	patl1 (ENSSTUG00000047084)	ENSSTUG00000047081	pdcd4a (ENSSTUG00000046821)	mogs (ENSSTUG00000046788)	FBXO41 (ENSSTUG00000046742)	ENSSTUG00000046726	rnf24 (ENSSTUG00000046711)	smox (ENSSTUG00000046704)	ENSSTUG00000046698	ADRA1D (ENSSTUG00000046685)	CTNNA2 (ENSSTUG00000046678)	LRRTM1 (ENSSTUG00000046676)
Atlantic salmon	MODERN SPECIES	27	tacr3l (ENSSSAG00000095583)	ENSSSAG00000041089	cldnd1b (ENSSSAG00000089615)	ENSSSAG00000102183	ENSSSAG00000041120	ENSSSAG00000041148	ENSSSAG00000041156	ENSSSAG00000106519	ENSSSAG00000041260 #30	ENSSSAG00000041284 #28	ENSSSAG00000041290 #27	serping1 (ENSSSAG00000063885)	doc2d (ENSSSAG00000063929)	ENSSSAG00000100733 #31	ENSSSAG00000041511	ENSSSAG00000041617 #22	ENSSSAG00000042856	ENSSSAG00000043053	mogs (ENSSSAG00000064563)	ENSSSAG00000046984	ENSSSAG00000047010	ENSSSAG00000105176	RNF24 (ENSSSAG00000095342)	smox (ENSSSAG00000064759)	ENSSSAG00000007913	ADRA1D (ENSSSAG00000007918)	LRRTM1 (ENSSSAG00000083145)	ENSSSAG00000008013	suclg1 (ENSSSAG00000008139)	ENSSSAG00000103581	ENSSSAG00000008170
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #30	ENSGT00390000001289.a.g #28	ENSGT00390000011766.f #27	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #31	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT01030000234543.A.a.h.a.a	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.a	ENSGT00940000156351.l.b
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000067081	ENSOMYG00000070156	ENSOMYG00000058329	ENSOMYG00000010610	ENSOMYG00000064659	ENSOMYG00000072004 #30	ENSOMYG00000011672 #28	ENSOMYG00000011651 #27	ENSOMYG00000059190	serping1 (ENSOMYG00000011625)	doc2d (ENSOMYG00000011603)	ENSOMYG00000077883 #31	ENSOMYG00000055206	ENSOMYG00000007521	ENSOMYG00000061229	ENSOMYG00000010122 #22	ENSOMYG00000016570	ENSOMYG00000016555	ENSOMYG00000015868	mogs (ENSOMYG00000015792)	ENSOMYG00000015762	rnf24 (ENSOMYG00000015737)	smox (ENSOMYG00000015547)	ENSOMYG00000015484	adra1b (ENSOMYG00000015475)	CTNNA2 (ENSOMYG00000015458)	ENSOMYG00000015450	ctnna2 (ENSOMYG00000015423)	suclg1 (ENSOMYG00000015366)	cisd2 (ENSOMYG00000015345)	ENSOMYG00000015313
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #30	ENSGT00390000001289.a.g #28	ENSGT00390000011766.f #27	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #31	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.a	ENSGT00940000156351.l.b	ENSGT00940000156660.d
Coho salmon	MODERN SPECIES	27	ENSOKIG00005016010	tacr3l (ENSOKIG00005016023)	ENSOKIG00005016065	ACY3 (ENSOKIG00005016070)	cldnd1b (ENSOKIG00005016083)	ENSOKIG00005016092	ENSOKIG00005016103	ENSOKIG00005016121	GPR83 (ENSOKIG00005016218)	cdk2ap2 (ENSOKIG00005016226) #30	aip (ENSOKIG00005016244) #28	tmem134 (ENSOKIG00005016256) #27	serping1 (ENSOKIG00005016270)	doc2d (ENSOKIG00005016308)	LONRF1 (ENSOKIG00005016341)	RPS6KB2 (ENSOKIG00005016392) #22	ENSOKIG00005017183	patl1 (ENSOKIG00005017198)	ENSOKIG00005017262	ENSOKIG00005017303	mogs (ENSOKIG00005017826)	FBXO41 (ENSOKIG00005017837)	rnf24 (ENSOKIG00005017879)	smox (ENSOKIG00005017892)	ENSOKIG00005025927	ADRA1D (ENSOKIG00005025944)	ctnna2 (ENSOKIG00005025961)	ENSOKIG00005025969	LRRTM1 (ENSOKIG00005025973)	ctnna2 (ENSOKIG00005026027)	ENSOKIG00005026919
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2	ccdc86 (ENSOTSG00005001805)	ACY3 (ENSOTSG00005001822)	tacr3l (ENSOTSG00005001838)	cldnd1b (ENSOTSG00005001844)	ENSOTSG00005001847	ENSOTSG00005001855	GPR83 (ENSOTSG00005001862)	cdk2ap2 (ENSOTSG00005001875) #30	aip (ENSOTSG00005001890) #28	tmem134 (ENSOTSG00005001894) #27	serping1 (ENSOTSG00005001901)	doc2d (ENSOTSG00005001907)	ENSOTSG00005001915 #31	ENSOTSG00005001919	ENSOTSG00005001924	RPS6KB2 (ENSOTSG00005001961) #22	patl1 (ENSOTSG00005003681)	pdcd4a (ENSOTSG00005003692)	ENSOTSG00005005496	ENSOTSG00005005497	FBXO41 (ENSOTSG00005005498)	rnf24 (ENSOTSG00005005499)	smox (ENSOTSG00005005501)	ENSOTSG00005005504	ADRA1D (ENSOTSG00005005506)	ctnna2 (ENSOTSG00005005511)	ENSOTSG00005005512	LRRTM1 (ENSOTSG00005005513)	ENSOTSG00005005514	ctnna2 (ENSOTSG00005005515)	suclg1 (ENSOTSG00005005666)
Chinook salmon	MODERN SPECIES	66	CACNA1B (ENSOTSG00005021787)	ehmt1b (ENSOTSG00005021006)	rtknb (ENSOTSG00005021005)	ENSOTSG00005021004	ENSOTSG00005021003	ENSOTSG00005021001	cntf (ENSOTSG00005021000)	GPR83 (ENSOTSG00005020999)	cdk2ap2 (ENSOTSG00005020998) #30	aip (ENSOTSG00005020997) #28	tmem134 (ENSOTSG00005020996) #27	serping1 (ENSOTSG00005020995)	doc2d (ENSOTSG00005020994)	ENSOTSG00005020993	ENSOTSG00005020992	RPS6KB2 (ENSOTSG00005020990) #22	patl1 (ENSOTSG00005020988)	pdcd4a (ENSOTSG00005019518)	ENSOTSG00005019515	ENSOTSG00005019514	FBXO41 (ENSOTSG00005019513)	rnf24 (ENSOTSG00005019512)	smox (ENSOTSG00005019511)	ENSOTSG00005019510	ADRA1D (ENSOTSG00005019507)	ctnna2 (ENSOTSG00005019506)	ENSOTSG00005019505	LRRTM1 (ENSOTSG00005019504)	ctnna2 (ENSOTSG00005019484)	suclg1 (ENSOTSG00005019483)	cisd2 (ENSOTSG00005019482)
Northern pike	MODERN SPECIES	24	ankrd49 (ENSELUG00000026478)	GPR83 (ENSELUG00000022975)	ENSELUG00000032300	ENSELUG00000023021	ENSELUG00000030691	ENSELUG00000028280	cdk2ap2 (ENSELUG00000030693) #30	aip (ENSELUG00000023123) #28	tmem134 (ENSELUG00000023207) #27	serping1 (ENSELUG00000023225)	doc2d (ENSELUG00000023240)	ENSELUG00000026595	CABP2 (ENSELUG00000028776) #31	LONRF1 (ENSELUG00000023387)	ENSELUG00000023310	RPS6KB2 (ENSELUG00000001422) #22	ENSELUG00000032247	ENSELUG00000023838	ENSELUG00000023812	ENSELUG00000023936	ENSELUG00000027687	ENSELUG00000023784	ENSELUG00000023987	ENSELUG00000024004	ENSELUG00000024089	ENSELUG00000024018	ENSELUG00000001008	ENSELUG00000026297	ENSELUG00000024061	ENSELUG00000016949	ENSELUG00000033667
Otomorpha	ANCESTRAL SPECIES	536															ENSGT00940000180362.b	ENSGT00940000155062.a #22	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B.f.b.a.a	ENSGT00980000199739
Clupeiformes	ANCESTRAL SPECIES	26	ENSGT00940000156393.a.b	ENSGT01000000214857	ENSGT00390000017281	ENSGT00950000182942.a.a	ENSGT00940000159063.f	ENSGT00940000173396	ENSGT01030000234601.q.a	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j	ENSGT00390000002596.b	ENSGT00730000111690.B.f.b.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000180362.b	ENSGT00940000155062.a #22	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT00940000158942.a	ENSGT00950000183012.A.b	ENSGT00510000052942	ENSGT00980000202422	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT00940000153662.A.f	ENSGT00950000182881.a.b.a.b.z.a	ENSGT00940000155484.b #11	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00390000003049.b.a	ENSGT00390000011272	ENSGT01020000230351.B.j.a	ENSGT00940000157117.k
Denticle herring	MODERN SPECIES	14	cdk2ap2 (ENSDCDG00000028719) #30	ENSDCDG00000028714	cntf (ENSDCDG00000028705)	ENSDCDG00000028701	ENSDCDG00000028689	ENSDCDG00000028687	ENSDCDG00000028684	glb1 (ENSDCDG00000027570)	ENSDCDG00000027557	ENSDCDG00000027556	tacr3l (ENSDCDG00000027552)	acy3.2 (ENSDCDG00000027548)	cldnd1b (ENSDCDG00000027546)	osbp (ENSDCDG00000027532)	patl1 (ENSDCDG00000027526)	RPS6KB2 (ENSDCDG00000027065) #22	ENSDCDG00000027041	ENSDCDG00000027036	ENSDCDG00000027019	ENSDCDG00000027011	vps37c (ENSDCDG00000027008)	tmem176 (ENSDCDG00000027004)	ENSDCDG00000027002	ENSDCDG00000026990	PRPF19 (ENSDCDG00000026988)	TCIRG1 (ENSDCDG00000026911)	kdm2aa (ENSDCDG00000026146) #11	stx3a (ENSDCDG00000026109)	ndufs8a (ENSDCDG00000026107)	TMEM187 (ENSDCDG00000026106)	p2rx3b (ENSDCDG00000026105)
Atlantic herring	MODERN SPECIES	14	dvl3a (ENSCHAG00000000950)	ap2m1a (ENSCHAG00000000899)	pcyt1aa (ENSCHAG00000000780)	SERP1 (ENSCHAG00000000757)	selenot1a (ENSCHAG00000000724)	DDR2 (ENSCHAG00000000563)	ENSCHAG00000017284	rgs5b (ENSCHAG00000017250)	ENSCHAG00000017225	ENSCHAG00000017213	NMUR1 (ENSCHAG00000016995)	cpdp (ENSCHAG00000016978)	ENSCHAG00000016918	med31 (ENSCHAG00000016908)	ENSCHAG00000016891	RPS6KB2 (ENSCHAG00000016541) #22	ENSCHAG00000016517	ENSCHAG00000016480	ENSCHAG00000016367	ENSCHAG00000016035	ENSCHAG00000015999	ENSCHAG00000015992	ENSCHAG00000015920	patl1 (ENSCHAG00000015834)	osbp (ENSCHAG00000015665)	ENSCHAG00000015655	ENSCHAG00000015639	ENSCHAG00000015606	ENSCHAG00000015589	ENSCHAG00000015553	cldnd1b (ENSCHAG00000015544)
Otophysi	ANCESTRAL SPECIES	577																ENSGT00940000155062.a #22	ENSGT00520000055649.a
Characiphysae	ANCESTRAL SPECIES	114	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000153558	ENSGT00940000155007.n.b	ENSGT00390000009819.a.a	ENSGT00530000063926.a	ENSGT00940000165823	ENSGT00390000008711.h
Characiphysae_b	ANCESTRAL SPECIES	135	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b	ENSGT00940000155062.a #22
Characoidei	ANCESTRAL SPECIES	133	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b.a	ENSGT00940000155062.a #22
Red-bellied piranha	MODERN SPECIES	1084													ENSPNAG00000009315	ENSPNAG00000001309	ENSPNAG00000009286	RPS6KB2 (ENSPNAG00000009268) #22	ENSPNAG00000009210	ENSPNAG00000009193
Mexicana tetra	MODERN SPECIES	13	LRRTM1 (ENSAMXG00000025113)	ctnna2 (ENSAMXG00000018513)	suclg1 (ENSAMXG00000005265)	cisd2 (ENSAMXG00000042295)	ENSAMXG00000042540	bdh2 (ENSAMXG00000040462)	tacr3a (ENSAMXG00000005217)	cnga1a (ENSAMXG00000043371)	enam (ENSAMXG00000030244)	scpp5 (ENSAMXG00000037331)	scpp7 (ENSAMXG00000033970)	odam (ENSAMXG00000037617)	scpp9 (ENSAMXG00000039551)	ENSAMXG00000035031	ENSAMXG00000038073	RPS6KB2 (ENSAMXG00000004056) #22	hpf1 (ENSAMXG00000034213)	ENSAMXG00000030810	ENSAMXG00000030369	ENSAMXG00000030781	ENSAMXG00000039785	camk2d2 (ENSAMXG00000004004)	ENSAMXG00000035755	ENSAMXG00000038972	ENSAMXG00000032032	crmp1 (ENSAMXG00000003990)	WFS1 (ENSAMXG00000003978)
Electric eel	MODERN SPECIES	1354														ENSEEEG00000018145	ENSEEEG00000018144	RPS6KB2 (ENSEEEG00000018066) #22
Channel catfish	MODERN SPECIES	21	suclg1 (ENSIPUG00000015947)	ENSIPUG00000015955	ENSIPUG00000015967	cisd2 (ENSIPUG00000015976)	ENSIPUG00000016001	ENSIPUG00000016037	ENSIPUG00000016044	ENSIPUG00000016048	ENSIPUG00000016061	ENSIPUG00000016105	bdh2 (ENSIPUG00000016147)	tacr3 (ENSIPUG00000016246)	cnga1a (ENSIPUG00000016281)	odam (ENSIPUG00000016299)	ENSIPUG00000016313	RPS6KB2 (ENSIPUG00000016325) #22	ENSIPUG00000016365	ENSIPUG00000016386	ENSIPUG00000016394	ENSIPUG00000016420	ENSIPUG00000016437	ENSIPUG00000016498	ENSIPUG00000016525	ENSIPUG00000016557	ENSIPUG00000016592	patl1 (ENSIPUG00000016627)	DNAJA1 (ENSIPUG00000016707)	ENSIPUG00000016741	rps6 (ENSIPUG00000016770)	ACER2 (ENSIPUG00000016812)	A33 (ENSIPUG00000016835)
Osteoglossiformes	ANCESTRAL SPECIES	114														ENSGT01030000235063.a	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B	ENSGT00980000199739.a	ENSGT01030000234601	ENSGT00390000001189.b.i.i.a	ENSGT00390000002596.b	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00940000160334.m #30	ENSGT00390000001289.a #28
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015025711	ENSSFOG00015028148	ENSSFOG00015028400	ENSSFOG00015007597	hpf1 (ENSSFOG00015007682)	ANK2 (ENSSFOG00015028530)	camk2d1 (ENSSFOG00015007879)	chic2 (ENSSFOG00015007962)	WFS1 (ENSSFOG00015008008)	exoc1l (ENSSFOG00015008063)	ENSSFOG00015010021	dtx4a (ENSSFOG00015025212)	ENSSFOG00015009984	ENSSFOG00015009970	ENSSFOG00015009866	RPS6KB2 (ENSSFOG00015009820) #22	ENSSFOG00015009779	ENSSFOG00015032046	ENSSFOG00015029325	ENSSFOG00015026904	ENSSFOG00015009667	ENSSFOG00015024892	ENSSFOG00015009654	patl1 (ENSSFOG00015009614)	osbp (ENSSFOG00015009541)	ENSSFOG00015009499	ENSSFOG00015028596	ENSSFOG00015009467	ACY3 (ENSSFOG00015032855)	cldnd1b (ENSSFOG00015009451)	ENSSFOG00015009402
P. kingsleyae	MODERN SPECIES	693												dtx4a (ENSPKIG00000014683)	ENSPKIG00000014604	ENSPKIG00000014587	ENSPKIG00000014571	RPS6KB2 (ENSPKIG00000014443) #22	ENSPKIG00000014333
Spotted gar	MODERN SPECIES	675	dsc2l (ENSLOCG00000006830)	ENSLOCG00000006871 #26	aip (ENSLOCG00000006893) #28	ENSLOCG00000006911	ENSLOCG00000006926	ENSLOCG00000006939	doc2d (ENSLOCG00000006958)	ENSLOCG00000006991	ENSLOCG00000007003	ENSLOCG00000007012	ZFP91 (ENSLOCG00000007033)	ENSLOCG00000007044	ENSLOCG00000007057	si:dkey-9i23.5 (ENSLOCG00000007066)	ENSLOCG00000007079 #24	ENSLOCG00000007090 #22	ENSLOCG00000017818	ENSLOCG00000007110	dtx4a (ENSLOCG00000007126)	ENSLOCG00000007143	ENSLOCG00000017819	EPC1 (ENSLOCG00000007160)	KIF5B (ENSLOCG00000007172)	arhgap12b (ENSLOCG00000007199)	zeb1b (ENSLOCG00000007239)	znf438 (ENSLOCG00000007254)	SVIL (ENSLOCG00000007278)	ENSLOCG00000007305	ENSLOCG00000007332	MTPAP (ENSLOCG00000007357)	MAP3K8 (ENSLOCG00000007364)
Reedfish	MODERN SPECIES	1	ENSECRG00000010610	ENSECRG00000010602	ENSECRG00000010591	ENSECRG00000010586	ENSECRG00000010580	ENSECRG00000010572	ENSECRG00000010568	MPEG1 (ENSECRG00000010559)	ENSECRG00000010548	ENSECRG00000010541	ENSECRG00000010535	ENSECRG00000010529	ENSECRG00000010525	ENSECRG00000010523	ENSECRG00000010517	RPS6KB2 (ENSECRG00000010507) #22	ENSECRG00000010486 #24	aldob (ENSECRG00000010463)	pgap4 (ENSECRG00000010458)	rnf20 (ENSECRG00000010449)	ENSECRG00000010440	ENSECRG00000010435	ENSECRG00000010427	VPS37C (ENSECRG00000010424)	ENSECRG00000010420	ENSECRG00000010416	ENSECRG00000010409	ENSECRG00000010405	ENSECRG00000010400	ENSECRG00000010391	ENSECRG00000010380