Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155062 #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Euteleostomi	ANCESTRAL SPECIES	1103																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Sarcopterygii	ANCESTRAL SPECIES	959																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Tetrapoda	ANCESTRAL SPECIES	452																ENSGT00940000155062.a #22	ENSGT00940000159031 #24
Amniota	ANCESTRAL SPECIES	81				ENSGT01030000234639.A.b ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00530000063359.B
Mammalia	ANCESTRAL SPECIES	83			ENSGT01030000234639.A.b.a.b.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00940000163435	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000168541	ENSGT00940000155904
Theria	ANCESTRAL SPECIES	8	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000168541	ENSGT00940000155904	ENSGT00530000063359.B
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000163374	ENSGT01100000264273
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000163374	ENSGT01100000264273
Primates	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163889 #37	ENSGT00940000154816.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00940000173013	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Rhesus	MODERN SPECIES	5	RCE1 (ENSMMUG00000057966) #7	LRFN4 (ENSMMUG00000004534) #8	PC (ENSMMUG00000004533) #9	C14H11orf86 (ENSMMUG00000014772) #10	SYT12 (ENSMMUG00000011741) #11	RHOD (ENSMMUG00000031214) #12	KDM2A (ENSMMUG00000008771) #13	GRK2 (ENSMMUG00000015925) #14	ANKRD13D (ENSMMUG00000015928) #15	SSH3 (ENSMMUG00000015932) #16	POLD4 (ENSMMUG00000004523) #17	RAD9A (ENSMMUG00000017275) #18	PPP1CA (ENSMMUG00000017278) #19	TBC1D10C (ENSMMUG00000017280) #20	CARNS1 (ENSMMUG00000005480) #21	RPS6KB2 (ENSMMUG00000005483) #22	PTPRCAP (ENSMMUG00000005486) #23	CORO1B (ENSMMUG00000005488) #24	ENSMMUG00000053378 #25	GPR152 (ENSMMUG00000005489) #26	CABP4 (ENSMMUG00000052347) #27	TMEM134 (ENSMMUG00000005493) #28	AIP (ENSMMUG00000011817) #29	PITPNM1 (ENSMMUG00000011821) #30	CDK2AP2 (ENSMMUG00000057395) #31	CABP2 (ENSMMUG00000011828) #32	GSTP1 (ENSMMUG00000018524) #33	NDUFV1 (ENSMMUG00000018526) #34	DOC2G (ENSMMUG00000018527) #35	ENSMMUG00000062171 #36	NUDT8 (ENSMMUG00000042611) #37
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000050217	KDM2A (ENSMFAG00000031721) #13	GRK2 (ENSMFAG00000002282) #14	ANKRD13D (ENSMFAG00000061318) #15	SSH3 (ENSMFAG00000002317) #16	ENSMFAG00000012569	ENSMFAG00000053079	ENSMFAG00000045971	CLCF1 (ENSMFAG00000039712)	ENSMFAG00000053215	RAD9A (ENSMFAG00000041314) #18	PPP1CA (ENSMFAG00000001854) #19	TBC1D10C (ENSMFAG00000045050) #20	CARNS1 (ENSMFAG00000046293) #21	ENSMFAG00000051490	RPS6KB2 (ENSMFAG00000031507) #22	CORO1B (ENSMFAG00000037995) #24	CABP4 (ENSMFAG00000038440) #27	ENSMFAG00000056898	TMEM134 (ENSMFAG00000030408) #28	AIP (ENSMFAG00000034062) #29	PITPNM1 (ENSMFAG00000046144) #30	CDK2AP2 (ENSMFAG00000033158) #31	CABP2 (ENSMFAG00000003212) #32	GSTP1 (ENSMFAG00000032564) #33	ENSMFAG00000051463 #37	ENSMFAG00000061940	NDUFV1 (ENSMFAG00000038730) #34	TBX10 (ENSMFAG00000007056)	ACY3 (ENSMFAG00000046339)	ALDH3B2 (ENSMFAG00000044295)
Pig-tailed macaque	MODERN SPECIES	433	LRFN4 (ENSMNEG00000039420) #8	C11orf86 (ENSMNEG00000042948) #10	SYT12 (ENSMNEG00000035919) #11	RHOD (ENSMNEG00000034211) #12	KDM2A (ENSMNEG00000028013) #13	ENSMNEG00000031090	GRK2 (ENSMNEG00000007223) #14	ANKRD13D (ENSMNEG00000035052) #15	SSH3 (ENSMNEG00000031930) #16	RAD9A (ENSMNEG00000043395) #18	POLD4 (ENSMNEG00000013342) #17	CLCF1 (ENSMNEG00000034658)	PPP1CA (ENSMNEG00000042253) #19	TBC1D10C (ENSMNEG00000031857) #20	CARNS1 (ENSMNEG00000038393) #21	RPS6KB2 (ENSMNEG00000032247) #22	PTPRCAP (ENSMNEG00000043708) #23	CORO1B (ENSMNEG00000044473) #24	GPR152 (ENSMNEG00000030403) #26	CABP4 (ENSMNEG00000032138) #27	TMEM134 (ENSMNEG00000041551) #28	AIP (ENSMNEG00000039995) #29	PITPNM1 (ENSMNEG00000043351) #30	CDK2AP2 (ENSMNEG00000042636) #31	CABP2 (ENSMNEG00000045390) #32	GSTP1 (ENSMNEG00000044300) #33	NDUFV1 (ENSMNEG00000041086) #34	ENSMNEG00000033340 #35	NUDT8 (ENSMNEG00000041484) #37	TBX10 (ENSMNEG00000032749)	ACY3 (ENSMNEG00000041493)
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Olive baboon	MODERN SPECIES	3	PC (ENSPANG00000011195) #9	LRFN4 (ENSPANG00000026466) #8	C11orf86 (ENSPANG00000029904) #10	SYT12 (ENSPANG00000004416) #11	RHOD (ENSPANG00000004925) #12	KDM2A (ENSPANG00000010861) #13	GRK2 (ENSPANG00000024198) #14	ANKRD13D (ENSPANG00000008594) #15	SSH3 (ENSPANG00000023601) #16	POLD4 (ENSPANG00000007733) #17	CLCF1 (ENSPANG00000022856)	RAD9A (ENSPANG00000003109) #18	PPP1CA (ENSPANG00000009836) #19	TBC1D10C (ENSPANG00000006614) #20	CARNS1 (ENSPANG00000011528) #21	RPS6KB2 (ENSPANG00000011196) #22	PTPRCAP (ENSPANG00000004926) #23	CORO1B (ENSPANG00000015784) #24	GPR152 (ENSPANG00000012974) #26	CABP4 (ENSPANG00000011704) #27	TMEM134 (ENSPANG00000007007) #28	AIP (ENSPANG00000006615) #29	PITPNM1 (ENSPANG00000015330) #30	CDK2AP2 (ENSPANG00000004749) #31	CABP2 (ENSPANG00000026467) #32	GSTP1 (ENSPANG00000004067) #33	NDUFV1 (ENSPANG00000011236) #34	ENSPANG00000008595 #35	NUDT8 (ENSPANG00000009837) #37	TBX10 (ENSPANG00000006501)	ACY3 (ENSPANG00000024740)
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Sooty mangabey	MODERN SPECIES	518	LRFN4 (ENSCATG00000027775) #8	PC (ENSCATG00000039663) #9	C11orf86 (ENSCATG00000038272) #10	SYT12 (ENSCATG00000038163) #11	RHOD (ENSCATG00000029650) #12	KDM2A (ENSCATG00000035052) #13	GRK2 (ENSCATG00000020325) #14	ANKRD13D (ENSCATG00000030715) #15	SSH3 (ENSCATG00000039482) #16	POLD4 (ENSCATG00000035283) #17	CLCF1 (ENSCATG00000041096)	RAD9A (ENSCATG00000020148) #18	PPP1CA (ENSCATG00000031120) #19	TBC1D10C (ENSCATG00000035510) #20	CARNS1 (ENSCATG00000032796) #21	RPS6KB2 (ENSCATG00000031028) #22	PTPRCAP (ENSCATG00000041535) #23	CORO1B (ENSCATG00000039163) #24	CABP4 (ENSCATG00000038209) #27	TMEM134 (ENSCATG00000041128) #28	AIP (ENSCATG00000030555) #29	PITPNM1 (ENSCATG00000039132) #30	CDK2AP2 (ENSCATG00000036893) #31	CABP2 (ENSCATG00000029380) #32	GSTP1 (ENSCATG00000032849) #33	NDUFV1 (ENSCATG00000028405) #34	ENSCATG00000030569 #35	NUDT8 (ENSCATG00000029910) #37	TBX10 (ENSCATG00000029511)	ACY3 (ENSCATG00000030863)	ALDH3B2 (ENSCATG00000015105)
Drill	MODERN SPECIES	942	ENSMLEG00000038971 #8	C11orf86 (ENSMLEG00000043661) #10	SYT12 (ENSMLEG00000028297) #11	RHOD (ENSMLEG00000031534) #12	KDM2A (ENSMLEG00000026026) #13	ENSMLEG00000042837	GRK2 (ENSMLEG00000034713) #14	SSH3 (ENSMLEG00000033996) #16	ENSMLEG00000024669	POLD4 (ENSMLEG00000039964) #17	CLCF1 (ENSMLEG00000000061)	RAD9A (ENSMLEG00000033976) #18	PPP1CA (ENSMLEG00000028349) #19	TBC1D10C (ENSMLEG00000043951) #20	CARNS1 (ENSMLEG00000041533) #21	RPS6KB2 (ENSMLEG00000028690) #22	PTPRCAP (ENSMLEG00000032460) #23	CORO1B (ENSMLEG00000031164) #24	GPR152 (ENSMLEG00000019825) #26	CABP4 (ENSMLEG00000030918) #27	TMEM134 (ENSMLEG00000027441) #28	AIP (ENSMLEG00000031372) #29	PITPNM1 (ENSMLEG00000030151) #30	CDK2AP2 (ENSMLEG00000040207) #31	CABP2 (ENSMLEG00000010923) #32	GSTP1 (ENSMLEG00000007972) #33	NDUFV1 (ENSMLEG00000041364) #34	NUDT8 (ENSMLEG00000008171) #37	ENSMLEG00000030742	ACY3 (ENSMLEG00000031989)	ALDH3B2 (ENSMLEG00000028402)
Vervet Monkey	MODERN SPECIES		PC (ENSCSAG00000008427) #9	C11orf86 (ENSCSAG00000008435) #10	SYT12 (ENSCSAG00000008443) #11	RHOD (ENSCSAG00000008459) #12	ENSCSAG00000019166	KDM2A (ENSCSAG00000008476) #13	GRK2 (ENSCSAG00000008492) #14	ANKRD13D (ENSCSAG00000008501) #15	SSH3 (ENSCSAG00000008510) #16	POLD4 (ENSCSAG00000008521) #17	CLCF1 (ENSCSAG00000008530)	RAD9A (ENSCSAG00000008542) #18	PPP1CA (ENSCSAG00000008548) #19	TBC1D10C (ENSCSAG00000008558) #20	CARNS1 (ENSCSAG00000008580) #21	RPS6KB2 (ENSCSAG00000008598) #22	PTPRCAP (ENSCSAG00000019165) #23	CORO1B (ENSCSAG00000008604) #24	GPR152 (ENSCSAG00000018962) #26	CABP4 (ENSCSAG00000008624) #27	TMEM134 (ENSCSAG00000008641) #28	AIP (ENSCSAG00000008652) #29	PITPNM1 (ENSCSAG00000008662) #30	CDK2AP2 (ENSCSAG00000008667) #31	CABP2 (ENSCSAG00000008676) #32	GSTP1 (ENSCSAG00000008684) #33	NDUFV1 (ENSCSAG00000008693) #34	ENSCSAG00000008700 #35	ENSCSAG00000008710	TBX10 (ENSCSAG00000008726)	ACY3 (ENSCSAG00000008735)
Rhinopithecus	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00910000148113	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Black snub-nosed monkey	MODERN SPECIES	1876	LRFN4 (ENSRBIG00000037474) #8	C11orf86 (ENSRBIG00000029927) #10	SYT12 (ENSRBIG00000042251) #11	RHOD (ENSRBIG00000030604) #12	KDM2A (ENSRBIG00000039553) #13	GRK2 (ENSRBIG00000036260) #14	ANKRD13D (ENSRBIG00000044738) #15	SSH3 (ENSRBIG00000043430) #16	ENSRBIG00000029788	POLD4 (ENSRBIG00000036506) #17	CLCF1 (ENSRBIG00000029063)	RAD9A (ENSRBIG00000032418) #18	PPP1CA (ENSRBIG00000043947) #19	TBC1D10C (ENSRBIG00000032877) #20	CARNS1 (ENSRBIG00000040033) #21	RPS6KB2 (ENSRBIG00000036100) #22	PTPRCAP (ENSRBIG00000044684) #23	CORO1B (ENSRBIG00000043610) #24	GPR152 (ENSRBIG00000041858) #26	CABP4 (ENSRBIG00000042584) #27	TMEM134 (ENSRBIG00000030826) #28	AIP (ENSRBIG00000036498) #29	PITPNM1 (ENSRBIG00000011676) #30	CDK2AP2 (ENSRBIG00000010171) #31	CABP2 (ENSRBIG00000042812) #32	GSTP1 (ENSRBIG00000041246) #33	NDUFV1 (ENSRBIG00000038931) #34	ENSRBIG00000031438 #35	NUDT8 (ENSRBIG00000039414) #37	TBX10 (ENSRBIG00000031114)	ACY3 (ENSRBIG00000001203)
Golden snub-nosed monkey	MODERN SPECIES	1279	PC (ENSRROG00000028920) #9	C11orf86 (ENSRROG00000038998) #10	SYT12 (ENSRROG00000027482) #11	RHOD (ENSRROG00000042223) #12	ENSRROG00000031731	KDM2A (ENSRROG00000045014) #13	GRK2 (ENSRROG00000032925) #14	ANKRD13D (ENSRROG00000041027) #15	SSH3 (ENSRROG00000036044) #16	POLD4 (ENSRROG00000037792) #17	CLCF1 (ENSRROG00000045504)	RAD9A (ENSRROG00000035222) #18	PPP1CA (ENSRROG00000039846) #19	TBC1D10C (ENSRROG00000019804) #20	CARNS1 (ENSRROG00000005925) #21	RPS6KB2 (ENSRROG00000044662) #22	PTPRCAP (ENSRROG00000015187) #23	CORO1B (ENSRROG00000039319) #24	CABP4 (ENSRROG00000039803) #27	TMEM134 (ENSRROG00000040406) #28	AIP (ENSRROG00000045104) #29	PITPNM1 (ENSRROG00000007043) #30	CDK2AP2 (ENSRROG00000043366) #31	CABP2 (ENSRROG00000037183) #32	GSTP1 (ENSRROG00000027191) #33	NDUFV1 (ENSRROG00000037664) #34	ENSRROG00000026586 #35	NUDT8 (ENSRROG00000037097) #37	TBX10 (ENSRROG00000039702)	ACY3 (ENSRROG00000039646)	ALDH3B2 (ENSRROG00000030687)
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731.c #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a.b #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334.i #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731.c #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a.b #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334.i #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Pan	ANCESTRAL SPECIES	1	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731.c #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a.b #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334.i #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Chimpanzee	MODERN SPECIES	2	PC (ENSPTRG00000023133) #9	LRFN4 (ENSPTRG00000003941) #8	C11H11orf86 (ENSPTRG00000003942) #10	SYT12 (ENSPTRG00000003943) #11	RHOD (ENSPTRG00000003944) #12	KDM2A (ENSPTRG00000003945) #13	GRK2 (ENSPTRG00000003946) #14	ANKRD13D (ENSPTRG00000003947) #15	SSH3 (ENSPTRG00000003949) #16	POLD4 (ENSPTRG00000003950) #17	CLCF1 (ENSPTRG00000047312)	RAD9A (ENSPTRG00000044525) #18	PPP1CA (ENSPTRG00000005449) #19	TBC1D10C (ENSPTRG00000003954) #20	CARNS1 (ENSPTRG00000028514) #21	RPS6KB2 (ENSPTRG00000003957) #22	PTPRCAP (ENSPTRG00000033878) #23	CORO1B (ENSPTRG00000003959) #24	GPR152 (ENSPTRG00000003960) #26	CABP4 (ENSPTRG00000050164) #27	TMEM134 (ENSPTRG00000003963) #28	AIP (ENSPTRG00000003964) #29	PITPNM1 (ENSPTRG00000003965) #30	CDK2AP2 (ENSPTRG00000003966) #31	CABP2 (ENSPTRG00000003967) #32	GSTP1 (ENSPTRG00000003968) #33	NDUFV1 (ENSPTRG00000003969) #34	DOC2G (ENSPTRG00000052755) #35	NUDT8 (ENSPTRG00000003971) #37	TBX10 (ENSPTRG00000003972)	ACY3 (ENSPTRG00000003973)
Bonobo	MODERN SPECIES	2	PC (ENSPPAG00000038616) #9	LRFN4 (ENSPPAG00000028662) #8	C11orf86 (ENSPPAG00000044055) #10	SYT12 (ENSPPAG00000029779) #11	RHOD (ENSPPAG00000029370) #12	KDM2A (ENSPPAG00000037841) #13	GRK2 (ENSPPAG00000028647) #14	ANKRD13D (ENSPPAG00000036041) #15	SSH3 (ENSPPAG00000016898) #16	POLD4 (ENSPPAG00000035704) #17	ENSPPAG00000035536	RAD9A (ENSPPAG00000031016) #18	PPP1CA (ENSPPAG00000023894) #19	TBC1D10C (ENSPPAG00000042701) #20	CARNS1 (ENSPPAG00000032452) #21	RPS6KB2 (ENSPPAG00000006795) #22	PTPRCAP (ENSPPAG00000044074) #23	CORO1B (ENSPPAG00000030008) #24	GPR152 (ENSPPAG00000008770) #26	CABP4 (ENSPPAG00000031081) #27	TMEM134 (ENSPPAG00000038698) #28	AIP (ENSPPAG00000026775) #29	PITPNM1 (ENSPPAG00000044125) #30	CDK2AP2 (ENSPPAG00000043090) #31	ENSPPAG00000043180 #32	GSTP1 (ENSPPAG00000043169) #33	NDUFV1 (ENSPPAG00000043544) #34	NUDT8 (ENSPPAG00000043158) #37	TBX10 (ENSPPAG00000030171)	ACY3 (ENSPPAG00000031478)	ALDH3B2 (ENSPPAG00000032213)
Human	MODERN SPECIES	2	LRFN4 (ENSG00000173621) #8	C11orf86 (ENSG00000173237) #10	SYT12 (ENSG00000173227) #11	RHOD (ENSG00000173156) #12	KDM2A (ENSG00000173120) #13	GRK2 (ENSG00000173020) #14	ANKRD13D (ENSG00000172932) #15	SSH3 (ENSG00000172830) #16	RAD9A (ENSG00000172613) #18	POLD4 (ENSG00000175482) #17	ENSG00000256514	CLCF1 (ENSG00000175505)	PPP1CA (ENSG00000172531) #19	TBC1D10C (ENSG00000175463) #20	CARNS1 (ENSG00000172508) #21	RPS6KB2 (ENSG00000175634) #22	PTPRCAP (ENSG00000213402) #23	CORO1B (ENSG00000172725) #24	GPR152 (ENSG00000175514) #26	CABP4 (ENSG00000175544) #27	TMEM134 (ENSG00000172663) #28	AIP (ENSG00000110711) #29	PITPNM1 (ENSG00000110697) #30	CDK2AP2 (ENSG00000167797) #31	CABP2 (ENSG00000167791) #32	GSTP1 (ENSG00000084207) #33	NDUFV1 (ENSG00000167792) #34	NUDT8 (ENSG00000167799) #37	TBX10 (ENSG00000167800)	ACY3 (ENSG00000132744)	ALDH3B2 (ENSG00000132746)
Gorilla	MODERN SPECIES	2	LRFN4 (ENSGGOG00000014503) #8	C11orf86 (ENSGGOG00000039309) #10	SYT12 (ENSGGOG00000014969) #11	RHOD (ENSGGOG00000014974) #12	ENSGGOG00000001636 #13	GRK2 (ENSGGOG00000011297) #14	ANKRD13D (ENSGGOG00000011308) #15	SSH3 (ENSGGOG00000011320) #16	POLD4 (ENSGGOG00000016028) #17	ENSGGOG00000008219	RAD9A (ENSGGOG00000009974) #18	ENSGGOG00000039742 #18	PPP1CA (ENSGGOG00000009981) #19	TBC1D10C (ENSGGOG00000009988) #20	CARNS1 (ENSGGOG00000009995) #21	RPS6KB2 (ENSGGOG00000009999) #22	PTPRCAP (ENSGGOG00000010011) #23	CORO1B (ENSGGOG00000010013) #24	GPR152 (ENSGGOG00000010019) #26	CABP4 (ENSGGOG00000010025) #27	TMEM134 (ENSGGOG00000042077) #28	AIP (ENSGGOG00000010142) #29	PITPNM1 (ENSGGOG00000010148) #30	CDK2AP2 (ENSGGOG00000010159) #31	ENSGGOG00000010165 #32	GSTP1 (ENSGGOG00000013849) #33	NDUFV1 (ENSGGOG00000011943) #34	ENSGGOG00000023590 #35	NUDT8 (ENSGGOG00000011953) #37	TBX10 (ENSGGOG00000011961)	ACY3 (ENSGGOG00000011979)
Orangutan	MODERN SPECIES	2	LRFN4 (ENSPPYG00000003006) #8	PC (ENSPPYG00000003005) #9	C11orf86 (ENSPPYG00000003004) #10	SYT12 (ENSPPYG00000003003) #11	RHOD (ENSPPYG00000003002) #12	KDM2A (ENSPPYG00000003001) #13	GRK2 (ENSPPYG00000003000) #14	ANKRD13D (ENSPPYG00000002999) #15	SSH3 (ENSPPYG00000002998) #16	ENSPPYG00000034141	CLCF1 (ENSPPYG00000036168)	RAD9A (ENSPPYG00000002996) #18	PPP1CA (ENSPPYG00000002995) #19	TBC1D10C (ENSPPYG00000002994) #20	CARNS1 (ENSPPYG00000029387) #21	RPS6KB2 (ENSPPYG00000002993) #22	PTPRCAP (ENSPPYG00000037728) #23	CORO1B (ENSPPYG00000002992) #24	GPR152 (ENSPPYG00000002991) #26	CABP4 (ENSPPYG00000002990) #27	TMEM134 (ENSPPYG00000004100) #28	AIP (ENSPPYG00000002989) #29	PITPNM1 (ENSPPYG00000002988) #30	CDK2AP2 (ENSPPYG00000002987) #31	CABP2 (ENSPPYG00000002986) #32	GSTP1 (ENSPPYG00000002985) #33	NDUFV1 (ENSPPYG00000002983) #34	NUDT8 (ENSPPYG00000029677) #37	TBX10 (ENSPPYG00000002981)	ACY3 (ENSPPYG00000002980)	ALDH3B2 (ENSPPYG00000038703)
Gibbon	MODERN SPECIES	19	RCE1 (ENSNLEG00000006267) #7	PC (ENSNLEG00000006274) #9	LRFN4 (ENSNLEG00000006285) #8	SYT12 (ENSNLEG00000006288) #11	RHOD (ENSNLEG00000027419) #12	KDM2A (ENSNLEG00000006301) #13	GRK2 (ENSNLEG00000006311) #14	ANKRD13D (ENSNLEG00000006324) #15	SSH3 (ENSNLEG00000006321) #16	ENSNLEG00000029224	ENSNLEG00000006348	RAD9A (ENSNLEG00000006355) #18	PPP1CA (ENSNLEG00000006360) #19	TBC1D10C (ENSNLEG00000006381) #20	CARNS1 (ENSNLEG00000006317) #21	RPS6KB2 (ENSNLEG00000006392) #22	PTPRCAP (ENSNLEG00000006397) #23	CORO1B (ENSNLEG00000006399) #24	GPR152 (ENSNLEG00000018914) #26	CABP4 (ENSNLEG00000006425) #27	TMEM134 (ENSNLEG00000006430) #28	AIP (ENSNLEG00000006435) #29	PITPNM1 (ENSNLEG00000026976) #30	CDK2AP2 (ENSNLEG00000006438) #31	ENSNLEG00000006441 #32	ENSNLEG00000006448	NDUFV1 (ENSNLEG00000006458) #34	ENSNLEG00000028816 #35	ENSNLEG00000006493	ACY3 (ENSNLEG00000006494)	ALDH3B2 (ENSNLEG00000006499)
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Cebidae	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334.g #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Bolivian squirrel monkey	MODERN SPECIES	184	RCE1 (ENSSBOG00000025022) #7	LRFN4 (ENSSBOG00000002450) #8	PC (ENSSBOG00000026996) #9	C11orf86 (ENSSBOG00000026041) #10	SYT12 (ENSSBOG00000027954) #11	RHOD (ENSSBOG00000029726) #12	KDM2A (ENSSBOG00000034060) #13	GRK2 (ENSSBOG00000027760) #14	ANKRD13D (ENSSBOG00000034525) #15	SSH3 (ENSSBOG00000034638) #16	POLD4 (ENSSBOG00000030107) #17	CLCF1 (ENSSBOG00000025814)	RAD9A (ENSSBOG00000030122) #18	TBC1D10C (ENSSBOG00000022365) #20	CARNS1 (ENSSBOG00000032755) #21	RPS6KB2 (ENSSBOG00000025951) #22	PTPRCAP (ENSSBOG00000021090) #23	CORO1B (ENSSBOG00000034400) #24	CABP4 (ENSSBOG00000022028) #27	TMEM134 (ENSSBOG00000027525) #28	AIP (ENSSBOG00000024333) #29	PITPNM1 (ENSSBOG00000014886) #30	CDK2AP2 (ENSSBOG00000027862) #31	CABP2 (ENSSBOG00000025484) #32	GSTP1 (ENSSBOG00000031760) #33	ENSSBOG00000030579 #34	ENSSBOG00000028474	TBX10 (ENSSBOG00000027660)	ACY3 (ENSSBOG00000026048)	ALDH3B2 (ENSSBOG00000022925)	ENSSBOG00000019661
Capuchin	MODERN SPECIES	102	LRFN4 (ENSCCAG00000015158) #8	PC (ENSCCAG00000037632) #9	C11orf86 (ENSCCAG00000036118) #10	SYT12 (ENSCCAG00000033518) #11	RHOD (ENSCCAG00000033081) #12	KDM2A (ENSCCAG00000032038) #13	GRK2 (ENSCCAG00000026347) #14	ANKRD13D (ENSCCAG00000027410) #15	SSH3 (ENSCCAG00000009573) #16	POLD4 (ENSCCAG00000019708) #17	CLCF1 (ENSCCAG00000033675)	RAD9A (ENSCCAG00000031278) #18	PPP1CA (ENSCCAG00000020614) #19	TBC1D10C (ENSCCAG00000028758) #20	CARNS1 (ENSCCAG00000035608) #21	RPS6KB2 (ENSCCAG00000028374) #22	PTPRCAP (ENSCCAG00000025867) #23	CORO1B (ENSCCAG00000019041) #24	GPR152 (ENSCCAG00000014617) #26	CABP4 (ENSCCAG00000027469) #27	TMEM134 (ENSCCAG00000004430) #28	AIP (ENSCCAG00000027474) #29	PITPNM1 (ENSCCAG00000031570) #30	ENSCCAG00000028353 #31	CABP2 (ENSCCAG00000018244) #32	ENSCCAG00000037776	NDUFV1 (ENSCCAG00000027983) #34	ENSCCAG00000024841	ENSCCAG00000034598 #35	TBX10 (ENSCCAG00000035836)	ACY3 (ENSCCAG00000030848)
Marmoset	MODERN SPECIES	2	LRFN4 (ENSCJAG00000001191) #8	C11orf86 (ENSCJAG00000001141) #10	SYT12 (ENSCJAG00000001134) #11	RHOD (ENSCJAG00000001124) #12	KDM2A (ENSCJAG00000001071) #13	ENSCJAG00000070659	GRK2 (ENSCJAG00000001006) #14	ANKRD13D (ENSCJAG00000001059) #15	SSH3 (ENSCJAG00000000956) #16	RAD9A (ENSCJAG00000047617) #18	POLD4 (ENSCJAG00000085771) #17	CLCF1 (ENSCJAG00000042907)	ENSCJAG00000000983 #19	TBC1D10C (ENSCJAG00000000998) #20	CARNS1 (ENSCJAG00000000981) #21	RPS6KB2 (ENSCJAG00000000967) #22	PTPRCAP (ENSCJAG00000000963) #23	CORO1B (ENSCJAG00000000945) #24	GPR152 (ENSCJAG00000000943) #26	CABP4 (ENSCJAG00000000939) #27	TMEM134 (ENSCJAG00000000933) #28	AIP (ENSCJAG00000000929) #29	PITPNM1 (ENSCJAG00000000908) #30	CDK2AP2 (ENSCJAG00000044071) #31	CABP2 (ENSCJAG00000000890) #32	ENSCJAG00000000379	ENSCJAG00000000879	ENSCJAG00000031574	NDUFV1 (ENSCJAG00000000839) #34	ENSCJAG00000041608	TBX10 (ENSCJAG00000071274)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	411						KDM2A (ENSANAG00000035236) #13	GRK2 (ENSANAG00000017680) #14	ANKRD13D (ENSANAG00000026621) #15	SSH3 (ENSANAG00000027661) #16	POLD4 (ENSANAG00000034188) #17	CLCF1 (ENSANAG00000026225)	RAD9A (ENSANAG00000026397) #18	PPP1CA (ENSANAG00000023829) #19	TBC1D10C (ENSANAG00000019534) #20	CARNS1 (ENSANAG00000022851) #21	ENSANAG00000029796 #22	PTPRCAP (ENSANAG00000032799) #23	CORO1B (ENSANAG00000021241) #24	CABP4 (ENSANAG00000024753) #27	GPR152 (ENSANAG00000030207) #26	TMEM134 (ENSANAG00000033007) #28	AIP (ENSANAG00000022168) #29	PITPNM1 (ENSANAG00000025829) #30	CDK2AP2 (ENSANAG00000034157) #31	CABP2 (ENSANAG00000030444) #32	GSTP1 (ENSANAG00000031563) #33	NDUFV1 (ENSANAG00000029177) #34	ENSANAG00000026619 #35	ENSANAG00000026791	TBX10 (ENSANAG00000029548)	ACY3 (ENSANAG00000024838)
Mas night monkey	MODERN SPECIES	604	COL9A2 (ENSANAG00000036329)	SMAP2 (ENSANAG00000035291)	ZFP69B (ENSANAG00000033029)	ZFP69 (ENSANAG00000027896)	ENSANAG00000020223	RIMS3 (ENSANAG00000029140)	NFYC (ENSANAG00000020951)	KCNQ4 (ENSANAG00000021072)	CITED4 (ENSANAG00000036146)	ENSANAG00000037167	SMC2 (ENSANAG00000030051)	ENSANAG00000026565	ENSANAG00000019822	NIPSNAP3B (ENSANAG00000024274)	ABCA1 (ENSANAG00000033387)	ENSANAG00000019975 #22	SLC44A1 (ENSANAG00000027494)	ENSANAG00000020796	FSD1L (ENSANAG00000026736)	FKTN (ENSANAG00000031912)	TAL2 (ENSANAG00000005973)	TMEM38B (ENSANAG00000019169)	ZNF462 (ENSANAG00000035393)	RAD23B (ENSANAG00000021451)	KLF4 (ENSANAG00000034670)	ENSANAG00000020202	ELP1 (ENSANAG00000033165)	ENSANAG00000037326	ABITRAM (ENSANAG00000038404)	CTNNAL1 (ENSANAG00000032279)	TMEM245 (ENSANAG00000032340)
Tarsier	MODERN SPECIES	2329																RPS6KB2 (ENSTSYG00000027147) #22	CORO1B (ENSTSYG00000029285) #24	CABP4 (ENSTSYG00000030022) #27	TMEM134 (ENSTSYG00000031661) #28	AIP (ENSTSYG00000031634) #29
Strepsirrhini	ANCESTRAL SPECIES	35	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374	ENSGT00940000154816.a.a
Mouse lemur	MODERN SPECIES	27	LRFN4 (ENSMICG00000034770) #8	C11orf86 (ENSMICG00000026449) #10	SYT12 (ENSMICG00000015472) #11	RHOD (ENSMICG00000015500) #12	KDM2A (ENSMICG00000004044) #13	GRK2 (ENSMICG00000004063) #14	ANKRD13D (ENSMICG00000004074) #15	SSH3 (ENSMICG00000004087) #16	ENSMICG00000012349	POLD4 (ENSMICG00000004091) #17	CLCF1 (ENSMICG00000029277)	RAD9A (ENSMICG00000035662) #18	PPP1CA (ENSMICG00000004103) #19	TBC1D10C (ENSMICG00000004107) #20	CARNS1 (ENSMICG00000004109) #21	RPS6KB2 (ENSMICG00000004111) #22	CORO1B (ENSMICG00000004114) #24	CABP4 (ENSMICG00000004133) #27	TMEM134 (ENSMICG00000031454) #28	AIP (ENSMICG00000037390) #29	PITPNM1 (ENSMICG00000004138) #30	CDK2AP2 (ENSMICG00000029533) #31	CABP2 (ENSMICG00000006052) #32	GSTP1 (ENSMICG00000035404) #33	NDUFV1 (ENSMICG00000038015) #34	ENSMICG00000034887 #35	ENSMICG00000031375	ENSMICG00000038049	ACY3 (ENSMICG00000010175)	ALDH3B2 (ENSMICG00000002573)	UNC93B1 (ENSMICG00000009511)
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Coquerels sifaka	MODERN SPECIES	124	LRFN4 (ENSPCOG00000028690) #8	PC (ENSPCOG00000018736) #9	C11orf86 (ENSPCOG00000024212) #10	SYT12 (ENSPCOG00000013770) #11	RHOD (ENSPCOG00000028536) #12	KDM2A (ENSPCOG00000009542) #13	GRK2 (ENSPCOG00000026839) #14	ANKRD13D (ENSPCOG00000022746) #15	SSH3 (ENSPCOG00000015771) #16	POLD4 (ENSPCOG00000023695) #17	CLCF1 (ENSPCOG00000020098)	RAD9A (ENSPCOG00000021291) #18	PPP1CA (ENSPCOG00000026258) #19	TBC1D10C (ENSPCOG00000021827) #20	CARNS1 (ENSPCOG00000026244) #21	RPS6KB2 (ENSPCOG00000018557) #22	PTPRCAP (ENSPCOG00000028437) #23	CORO1B (ENSPCOG00000014764) #24	CABP4 (ENSPCOG00000018937) #27	TMEM134 (ENSPCOG00000014918) #28	AIP (ENSPCOG00000027570) #29	PITPNM1 (ENSPCOG00000025532) #30	CDK2AP2 (ENSPCOG00000017754) #31	CABP2 (ENSPCOG00000027212) #32	ENSPCOG00000013544	GSTP1 (ENSPCOG00000025031) #33	NDUFV1 (ENSPCOG00000016494) #34	ENSPCOG00000025071 #35	ENSPCOG00000017507	ENSPCOG00000026012	ACY3 (ENSPCOG00000016521)
Greater bamboo lemur	MODERN SPECIES	1196				ENSPSMG00000016956	KDM2A (ENSPSMG00000016988) #13	GRK2 (ENSPSMG00000017115) #14	ENSPSMG00000017196	ANKRD13D (ENSPSMG00000017212) #15	SSH3 (ENSPSMG00000017256) #16	POLD4 (ENSPSMG00000017275) #17	CLCF1 (ENSPSMG00000017291)	RAD9A (ENSPSMG00000017323) #18	PPP1CA (ENSPSMG00000017392) #19	TBC1D10C (ENSPSMG00000017434) #20	CARNS1 (ENSPSMG00000017445) #21	RPS6KB2 (ENSPSMG00000017487) #22	PTPRCAP (ENSPSMG00000017495) #23	CORO1B (ENSPSMG00000017512) #24	CABP4 (ENSPSMG00000017519) #27	TMEM134 (ENSPSMG00000017552) #28	AIP (ENSPSMG00000017577) #29	PITPNM1 (ENSPSMG00000017619) #30	CDK2AP2 (ENSPSMG00000017631) #31	CABP2 (ENSPSMG00000017650) #32	ENSPSMG00000017669	GSTP1 (ENSPSMG00000017706) #33	NDUFV1 (ENSPSMG00000017743) #34	ENSPSMG00000017792 #35	ENSPSMG00000017796	TBX10 (ENSPSMG00000017814)	ACY3 (ENSPSMG00000017835)
Bushbaby	MODERN SPECIES	249	RCE1 (ENSOGAG00000010555) #7	LRFN4 (ENSOGAG00000032101) #8	PC (ENSOGAG00000010560) #9	SYT12 (ENSOGAG00000025155) #11	RHOD (ENSOGAG00000010570) #12	KDM2A (ENSOGAG00000010623) #13	GRK2 (ENSOGAG00000010638) #14	ANKRD13D (ENSOGAG00000010645) #15	SSH3 (ENSOGAG00000010647) #16	POLD4 (ENSOGAG00000028157) #17	CLCF1 (ENSOGAG00000010653)	RAD9A (ENSOGAG00000028665) #18	PPP1CA (ENSOGAG00000033516) #19	TBC1D10C (ENSOGAG00000031940) #20	CARNS1 (ENSOGAG00000010654) #21	RPS6KB2 (ENSOGAG00000010658) #22	PTPRCAP (ENSOGAG00000025048) #23	CORO1B (ENSOGAG00000008262) #24	GPR152 (ENSOGAG00000027135) #26	CABP4 (ENSOGAG00000010618) #27	TMEM134 (ENSOGAG00000030275) #28	AIP (ENSOGAG00000008266) #29	PITPNM1 (ENSOGAG00000008269) #30	CDK2AP2 (ENSOGAG00000008275) #31	CABP2 (ENSOGAG00000032757) #32	ENSOGAG00000001869	NDUFV1 (ENSOGAG00000000781) #34	ENSOGAG00000025265 #35	ENSOGAG00000000783	ENSOGAG00000000784	ACY3 (ENSOGAG00000000785)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000163374	ENSGT01100000264273
Tree shrew	MODERN SPECIES	4042																RPS6KB2 (ENSTBEG00000013964) #22
Glires	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT01100000264273	ENSGT00940000162875 #35	ENSGT00940000162775
Lagomorpha	ANCESTRAL SPECIES	362															ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27
Pika	MODERN SPECIES	3446															ENSOPRG00000001032 #21	RPS6KB2 (ENSOPRG00000001039) #22	CORO1B (ENSOPRG00000001058) #24	GPR152 (ENSOPRG00000001080) #26	ENSOPRG00000001087 #27
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT01100000264273	ENSGT00940000162875 #35	ENSGT00940000162775
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT01100000264273	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Arctic ground squirrel	MODERN SPECIES	172	LRFN4 (ENSUPAG00010008457) #8	PC (ENSUPAG00010008269) #9	C11orf86 (ENSUPAG00010008258) #10	SYT12 (ENSUPAG00010008251) #11	RHOD (ENSUPAG00010008245) #12	KDM2A (ENSUPAG00010008235) #13	GRK2 (ENSUPAG00010008194) #14	ANKRD13D (ENSUPAG00010008166) #15	SSH3 (ENSUPAG00010008136) #16	POLD4 (ENSUPAG00010008127) #17	CLCF1 (ENSUPAG00010008123)	RAD9A (ENSUPAG00010008112) #18	PPP1CA (ENSUPAG00010008103) #19	TBC1D10C (ENSUPAG00010008076) #20	CARNS1 (ENSUPAG00010008057) #21	RPS6KB2 (ENSUPAG00010008011) #22	PTPRCAP (ENSUPAG00010008006) #23	CORO1B (ENSUPAG00010007990) #24	GPR152 (ENSUPAG00010007987) #26	CABP4 (ENSUPAG00010007974) #27	TMEM134 (ENSUPAG00010007965) #28	AIP (ENSUPAG00010007946) #29	PITPNM1 (ENSUPAG00010007905) #30	CDK2AP2 (ENSUPAG00010007891) #31	CABP2 (ENSUPAG00010007845) #32	GSTP1 (ENSUPAG00010007817) #33	NDUFV1 (ENSUPAG00010007803) #34	ENSUPAG00010007785 #35	ENSUPAG00010007775	ENSUPAG00010007771	ACY3 (ENSUPAG00010007756)
Squirrel	MODERN SPECIES	199	ENSSTOG00000024101	PC (ENSSTOG00000009227) #9	C11orf86 (ENSSTOG00000033450) #10	SYT12 (ENSSTOG00000011498) #11	RHOD (ENSSTOG00000013778) #12	KDM2A (ENSSTOG00000003355) #13	GRK2 (ENSSTOG00000015686) #14	ANKRD13D (ENSSTOG00000015689) #15	SSH3 (ENSSTOG00000015693) #16	POLD4 (ENSSTOG00000015701) #17	CLCF1 (ENSSTOG00000015702)	RAD9A (ENSSTOG00000021365) #18	PPP1CA (ENSSTOG00000019550) #19	TBC1D10C (ENSSTOG00000015704) #20	CARNS1 (ENSSTOG00000026187) #21	RPS6KB2 (ENSSTOG00000026088) #22	PTPRCAP (ENSSTOG00000032084) #23	CORO1B (ENSSTOG00000015711) #24	GPR152 (ENSSTOG00000031517) #26	CABP4 (ENSSTOG00000019909) #27	TMEM134 (ENSSTOG00000015718) #28	AIP (ENSSTOG00000015721) #29	PITPNM1 (ENSSTOG00000027855) #30	CDK2AP2 (ENSSTOG00000024042) #31	CABP2 (ENSSTOG00000014876) #32	GSTP1 (ENSSTOG00000025905) #33	NDUFV1 (ENSSTOG00000005850) #34	ENSSTOG00000021128 #35	ENSSTOG00000024208	TBX10 (ENSSTOG00000011629)	ACY3 (ENSSTOG00000015148)
Alpin marmot	MODERN SPECIES	86	RCE1 (ENSMMMG00000021852) #7	PC (ENSMMMG00000021862) #9	LRFN4 (ENSMMMG00000021894) #8	C11orf86 (ENSMMMG00000021900) #10	SYT12 (ENSMMMG00000021910) #11	RHOD (ENSMMMG00000021915) #12	KDM2A (ENSMMMG00000021919) #13	GRK2 (ENSMMMG00000021938) #14	ANKRD13D (ENSMMMG00000021943) #15	SSH3 (ENSMMMG00000021948) #16	POLD4 (ENSMMMG00000021956) #17	CLCF1 (ENSMMMG00000021958)	RAD9A (ENSMMMG00000021959) #18	PPP1CA (ENSMMMG00000021961) #19	TBC1D10C (ENSMMMG00000021967) #20	RPS6KB2 (ENSMMMG00000021969) #22	PTPRCAP (ENSMMMG00000021981) #23	CORO1B (ENSMMMG00000021982) #24	GPR152 (ENSMMMG00000021984) #26	CABP4 (ENSMMMG00000021985) #27	TMEM134 (ENSMMMG00000021986) #28	AIP (ENSMMMG00000022002) #29	PITPNM1 (ENSMMMG00000000005) #30	CABP2 (ENSMMMG00000000025) #32	GSTP1 (ENSMMMG00000000041) #33	NDUFV1 (ENSMMMG00000000065) #34	ENSMMMG00000000088 #35	NUDT8 (ENSMMMG00000000113) #37	ENSMMMG00000000133	ACY3 (ENSMMMG00000000156)	ALDH3B2 (ENSMMMG00000000185)
Eurasian red squirrel	MODERN SPECIES	2	PC (ENSSVLG00005005841) #9	C11orf86 (ENSSVLG00005005788) #10	SYT12 (ENSSVLG00005005751) #11	RHOD (ENSSVLG00005005696) #12	KDM2A (ENSSVLG00005005582) #13	GRK2 (ENSSVLG00005005546) #14	ANKRD13D (ENSSVLG00005005506) #15	SSH3 (ENSSVLG00005005420) #16	ENSSVLG00005005401	POLD4 (ENSSVLG00005005332) #17	CLCF1 (ENSSVLG00005005308)	RAD9A (ENSSVLG00005005281) #18	PPP1CA (ENSSVLG00005005219) #19	TBC1D10C (ENSSVLG00005005134) #20	CARNS1 (ENSSVLG00005005060) #21	RPS6KB2 (ENSSVLG00005005042) #22	PTPRCAP (ENSSVLG00005005019) #23	CORO1B (ENSSVLG00005004995) #24	CABP4 (ENSSVLG00005004965) #27	TMEM134 (ENSSVLG00005004915) #28	AIP (ENSSVLG00005004870) #29	PITPNM1 (ENSSVLG00005004838) #30	ENSSVLG00005004797 #31	CABP2 (ENSSVLG00005025399) #32	GSTP1 (ENSSVLG00005025366) #33	NDUFV1 (ENSSVLG00005025325) #34	ENSSVLG00005025305 #35	ENSSVLG00005025291	TBX10 (ENSSVLG00005025280)	ACY3 (ENSSVLG00005025257)	ALDH3B2 (ENSSVLG00005025242)
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT01100000264273	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Guinea pig	MODERN SPECIES	42	PC (ENSCPOG00000006323) #9	LRFN4 (ENSCPOG00000006338) #8	C11orf86 (ENSCPOG00000025117) #10	SYT12 (ENSCPOG00000022335) #11	RHOD (ENSCPOG00000024684) #12	KDM2A (ENSCPOG00000007134) #13	GRK2 (ENSCPOG00000015449) #14	ANKRD13D (ENSCPOG00000015451) #15	SSH3 (ENSCPOG00000008616) #16	POLD4 (ENSCPOG00000039935) #17	CLCF1 (ENSCPOG00000031948)	RAD9A (ENSCPOG00000033699) #18	PPP1CA (ENSCPOG00000032835) #19	TBC1D10C (ENSCPOG00000011171) #20	CARNS1 (ENSCPOG00000010514) #21	RPS6KB2 (ENSCPOG00000010518) #22	PTPRCAP (ENSCPOG00000023825) #23	CORO1B (ENSCPOG00000010527) #24	GPR152 (ENSCPOG00000020561) #26	CABP4 (ENSCPOG00000038418) #27	TMEM134 (ENSCPOG00000034721) #28	AIP (ENSCPOG00000025197) #29	PITPNM1 (ENSCPOG00000011204) #30	CDK2AP2 (ENSCPOG00000033165) #31	CABP2 (ENSCPOG00000023151) #32	GSTP1 (ENSCPOG00000020253) #33	NDUFV1 (ENSCPOG00000006645) #34	ENSCPOG00000022649 #35	ENSCPOG00000002514	TBX10 (ENSCPOG00000032079)	ACY3 (ENSCPOG00000002519)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Degu	MODERN SPECIES	59	LRFN4 (ENSODEG00000017708) #8	PC (ENSODEG00000017864) #9	C11orf86 (ENSODEG00000017799) #10	SYT12 (ENSODEG00000017589) #11	RHOD (ENSODEG00000017560) #12	KDM2A (ENSODEG00000017690) #13	GRK2 (ENSODEG00000018369) #14	ANKRD13D (ENSODEG00000017636) #15	SSH3 (ENSODEG00000017507) #16	POLD4 (ENSODEG00000017608) #17	CLCF1 (ENSODEG00000017639)	RAD9A (ENSODEG00000017457) #18	ENSODEG00000017595 #19	TBC1D10C (ENSODEG00000017872) #20	CARNS1 (ENSODEG00000017571) #21	RPS6KB2 (ENSODEG00000017566) #22	PTPRCAP (ENSODEG00000017616) #23	ENSODEG00000017778 #24	GPR152 (ENSODEG00000017462) #26	CABP4 (ENSODEG00000017561) #27	ENSODEG00000017587 #28	ENSODEG00000017554 #29	ENSODEG00000017542 #30	CDK2AP2 (ENSODEG00000017482) #31	CABP2 (ENSODEG00000017525) #32	ENSODEG00000017726 #33	NDUFV1 (ENSODEG00000017535) #34	ENSODEG00000017660 #35	ENSODEG00000017697	TBX10 (ENSODEG00000017601)	ACY3 (ENSODEG00000017439)
Long-tailed chinchilla	MODERN SPECIES	129	PC (ENSCLAG00000016128) #9	C11orf86 (ENSCLAG00000016624) #10	SYT12 (ENSCLAG00000017132) #11	RHOD (ENSCLAG00000015682) #12	KDM2A (ENSCLAG00000015882) #13	GRK2 (ENSCLAG00000015790) #14	ANKRD13D (ENSCLAG00000015242) #15	SSH3 (ENSCLAG00000016225) #16	POLD4 (ENSCLAG00000016804) #17	CLCF1 (ENSCLAG00000016411)	RAD9A (ENSCLAG00000014799) #18	PPP1CA (ENSCLAG00000014515) #19	TBC1D10C (ENSCLAG00000014250) #20	CARNS1 (ENSCLAG00000016069) #21	PTPRCAP (ENSCLAG00000016874) #23	RPS6KB2 (ENSCLAG00000016408) #22	CORO1B (ENSCLAG00000015993) #24	GPR152 (ENSCLAG00000016443) #26	CABP4 (ENSCLAG00000016497) #27	TMEM134 (ENSCLAG00000016841) #28	AIP (ENSCLAG00000016600) #29	ENSCLAG00000015015 #30	CDK2AP2 (ENSCLAG00000014787) #31	CABP2 (ENSCLAG00000015734) #32	GSTP1 (ENSCLAG00000015548) #33	NDUFV1 (ENSCLAG00000016746) #34	ENSCLAG00000016785 #35	ENSCLAG00000016240	TBX10 (ENSCLAG00000015667)	ACY3 (ENSCLAG00000016314)	ALDH3B2 (ENSCLAG00000017296)
Naked mole-rat female	MODERN SPECIES	14	LRFN4 (ENSHGLG00000043687) #8	C11orf86 (ENSHGLG00000010988) #10	SYT12 (ENSHGLG00000010017) #11	RHOD (ENSHGLG00000033630) #12	KDM2A (ENSHGLG00000019342) #13	ENSHGLG00000050293	GRK2 (ENSHGLG00000016215) #14	ANKRD13D (ENSHGLG00000019254) #15	SSH3 (ENSHGLG00000011687) #16	POLD4 (ENSHGLG00000010576) #17	CLCF1 (ENSHGLG00000009725)	RAD9A (ENSHGLG00000013829) #18	PPP1CA (ENSHGLG00000013028) #19	TBC1D10C (ENSHGLG00000011863) #20	CARNS1 (ENSHGLG00000015759) #21	RPS6KB2 (ENSHGLG00000011537) #22	PTPRCAP (ENSHGLG00000038375) #23	CORO1B (ENSHGLG00000014004) #24	GPR152 (ENSHGLG00000020880) #26	CABP4 (ENSHGLG00000012191) #27	TMEM134 (ENSHGLG00000046661)	AIP (ENSHGLG00000010309) #29	PITPNM1 (ENSHGLG00000008671) #30	CDK2AP2 (ENSHGLG00000008013) #31	CABP2 (ENSHGLG00000006502) #32	ENSHGLG00000011960	ENSHGLG00000043193	GSTP1 (ENSHGLG00000018697) #33	NDUFV1 (ENSHGLG00000042428) #34	ENSHGLG00000048694	ENSHGLG00000018636 #35
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163889 #37
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641.b #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641.a #34	ENSGT00390000010641.b #34	ENSGT00940000162875 #35	ENSGT00940000162775
Chinese hamster chok1gshd	MODERN SPECIES	401	Rbm14 (ENSCGRG00001024921)	Rbm4 (ENSCGRG00001016609)	Rbm4b (ENSCGRG00001024693)	Sptbn2 (ENSCGRG00001000301)	ENSCGRG00001015205	Rce1 (ENSCGRG00001010580) #7	Lrfn4 (ENSCGRG00001017073) #8	Pc (ENSCGRG00001007253) #9	2010003K11Rik (ENSCGRG00001018760) #10	Syt12 (ENSCGRG00001017074) #11	Rhod (ENSCGRG00001010682) #12	Kdm2a (ENSCGRG00001022950) #13	Grk2 (ENSCGRG00001017520) #14	Ankrd13d (ENSCGRG00001015858) #15	Ssh3 (ENSCGRG00001013911) #16	Rps6kb2 (ENSCGRG00001000810) #22	Ptprcap (ENSCGRG00001010731) #23	Coro1b (ENSCGRG00001004662) #24	Gpr152 (ENSCGRG00001019323) #26	Cabp4 (ENSCGRG00001017640) #27	Tmem134 (ENSCGRG00001010615) #28	Aip (ENSCGRG00001007960) #29	Pitpnm1 (ENSCGRG00001023287) #30	Cdk2ap2 (ENSCGRG00001012920) #31	Cabp2 (ENSCGRG00001008642) #32	Gstp3 (ENSCGRG00001014473)	Gstp1 (ENSCGRG00001020577) #33	Ndufv1 (ENSCGRG00001015739) #34	Doc2g (ENSCGRG00001018346) #35	Nudt8 (ENSCGRG00001011961)	Tbx10 (ENSCGRG00001004850)
Golden Hamster	MODERN SPECIES	617	Lrfn4 (ENSMAUG00000015996) #8	2010003K11Rik (ENSMAUG00000017841) #10	Syt12 (ENSMAUG00000016129) #11	Rhod (ENSMAUG00000016108) #12	ENSMAUG00000018328 #13	ENSMAUG00000016356 #13	Grk2 (ENSMAUG00000018453) #14	Ankrd13d (ENSMAUG00000016496) #15	Ssh3 (ENSMAUG00000016554) #16	Pold4 (ENSMAUG00000016004) #17	Clcf1 (ENSMAUG00000017012)	Rad9a (ENSMAUG00000017164) #18	Ppp1ca (ENSMAUG00000016057) #19	Tbc1d10c (ENSMAUG00000017190) #20	Carns1 (ENSMAUG00000017398) #21	Rps6kb2 (ENSMAUG00000017230) #22	Ptprcap (ENSMAUG00000017359) #23	Coro1b (ENSMAUG00000016373) #24	Gpr152 (ENSMAUG00000016522) #26	Cabp4 (ENSMAUG00000017898) #27	Tmem134 (ENSMAUG00000017612) #28	Aip (ENSMAUG00000017268) #29	Pitpnm1 (ENSMAUG00000016912) #30	Cdk2ap2 (ENSMAUG00000017833) #31	Cabp2 (ENSMAUG00000017000) #32	Gstp3 (ENSMAUG00000016934)	Gstp1 (ENSMAUG00000017855) #33	ENSMAUG00000017366 #34	Doc2g (ENSMAUG00000017758) #35	Nudt8 (ENSMAUG00000017149)	Tbx10 (ENSMAUG00000019219)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641.b #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Northern American deer mouse	MODERN SPECIES		Lrfn4 (ENSPEMG00000012813) #8	Pcx (ENSPEMG00000019079) #9	2010003K11Rik (ENSPEMG00000030269) #10	Syt12 (ENSPEMG00000003640) #11	Rhod (ENSPEMG00000018972) #12	Kdm2a (ENSPEMG00000016546) #13	Grk2 (ENSPEMG00000015350) #14	Ankrd13d (ENSPEMG00000011722) #15	Ssh3 (ENSPEMG00000018081) #16	Pold4 (ENSPEMG00000025422) #17	Clcf1 (ENSPEMG00000008786)	Rad9a (ENSPEMG00000006275) #18	Ppp1ca (ENSPEMG00000009056) #19	Tbc1d10c (ENSPEMG00000013534) #20	Carns1 (ENSPEMG00000010758) #21	Rps6kb2 (ENSPEMG00000016166) #22	Ptprcap (ENSPEMG00000029717) #23	Coro1b (ENSPEMG00000011980) #24	Gpr152 (ENSPEMG00000008897) #26	Cabp4 (ENSPEMG00000008224) #27	Tmem134 (ENSPEMG00000008430) #28	Aip (ENSPEMG00000005397) #29	Pitpnm1 (ENSPEMG00000001355) #30	Cdk2ap2 (ENSPEMG00000028665) #31	Cabp2 (ENSPEMG00000005235) #32	Gstp3 (ENSPEMG00000030796)	ENSPEMG00000016907 #33	ENSPEMG00000029247	ENSPEMG00000005365	Ndufv1 (ENSPEMG00000011587) #34	Doc2g (ENSPEMG00000005234) #35
Prairie vole	MODERN SPECIES	16	Lrfn4 (ENSMOCG00000005529) #8	Pcx (ENSMOCG00000017150) #9	2010003K11Rik (ENSMOCG00000014569) #10	Syt12 (ENSMOCG00000005203) #11	Rhod (ENSMOCG00000017530) #12	Kdm2a (ENSMOCG00000013724) #13	Grk2 (ENSMOCG00000007810) #14	Ankrd13d (ENSMOCG00000001738) #15	Ssh3 (ENSMOCG00000010426) #16	Pold4 (ENSMOCG00000020727) #17	Clcf1 (ENSMOCG00000019813)	Rad9a (ENSMOCG00000011209) #18	ENSMOCG00000000843 #19	Tbc1d10c (ENSMOCG00000022473) #20	ENSMOCG00000018725	Rps6kb2 (ENSMOCG00000006354) #22	Ptprcap (ENSMOCG00000021498) #23	Coro1b (ENSMOCG00000015585) #24	Gpr152 (ENSMOCG00000015199) #26	Cabp4 (ENSMOCG00000013395) #27	Tmem134 (ENSMOCG00000002494) #28	Aip (ENSMOCG00000001242) #29	Pitpnm1 (ENSMOCG00000006486) #30	Cdk2ap2 (ENSMOCG00000011876) #31	Cabp2 (ENSMOCG00000022563) #32	Gstp3 (ENSMOCG00000020117)	ENSMOCG00000020246 #33	Ndufv1 (ENSMOCG00000018645) #34	Doc2g (ENSMOCG00000007770) #35	Nudt8 (ENSMOCG00000002104)	Tbx10 (ENSMOCG00000018876)
Murinae	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Mus	ANCESTRAL SPECIES		ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374
Mus_C	ANCESTRAL SPECIES	25	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374	ENSGT00390000001189.b
spretus	MODERN SPECIES	10	Lrfn4 (MGP_SPRETEiJ_G0023424) #8	Pcx (MGP_SPRETEiJ_G0023423) #9	2010003K11Rik (MGP_SPRETEiJ_G0023422) #10	Syt12 (MGP_SPRETEiJ_G0023421) #11	MGP_SPRETEiJ_G0023420 #12	Kdm2a (MGP_SPRETEiJ_G0023419) #13	Grk2 (MGP_SPRETEiJ_G0023418) #14	Ankrd13d (MGP_SPRETEiJ_G0023417) #15	Ssh3 (MGP_SPRETEiJ_G0023416) #16	Pold4 (MGP_SPRETEiJ_G0023415) #17	Clcf1 (MGP_SPRETEiJ_G0023414)	Rad9a (MGP_SPRETEiJ_G0023413) #18	Ppp1ca (MGP_SPRETEiJ_G0023412) #19	Tbc1d10c (MGP_SPRETEiJ_G0023411) #20	Carns1 (MGP_SPRETEiJ_G0023410) #21	Rps6kb2 (MGP_SPRETEiJ_G0023409) #22	Ptprcap (MGP_SPRETEiJ_G0023408) #23	Coro1b (MGP_SPRETEiJ_G0023407) #24	Gpr152 (MGP_SPRETEiJ_G0023406) #26	Cabp4 (MGP_SPRETEiJ_G0023405) #27	MGP_SPRETEiJ_G0023404 #29	Pitpnm1 (MGP_SPRETEiJ_G0023403) #30	Cdk2ap2 (MGP_SPRETEiJ_G0023402) #31	Cabp2 (MGP_SPRETEiJ_G0023401) #32	Gstp3 (MGP_SPRETEiJ_G0023400)	Ndufv1 (MGP_SPRETEiJ_G0023399) #34	Doc2g (MGP_SPRETEiJ_G0023398) #35	Nudt8 (MGP_SPRETEiJ_G0023397)	Tbx10 (MGP_SPRETEiJ_G0023396)	Acy3 (MGP_SPRETEiJ_G0023395)	MGP_SPRETEiJ_G0023394
Steppe mouse	MODERN SPECIES	3175	Pcx (ENSMSIG00000005430) #9	Lrfn4 (ENSMSIG00000005682) #8	2010003K11Rik (ENSMSIG00000005698) #10	Syt12 (ENSMSIG00000005710) #11	ENSMSIG00000005753 #12	Kdm2a (ENSMSIG00000005774) #13	Grk2 (ENSMSIG00000005829) #14	Ankrd13d (ENSMSIG00000005923) #15	ENSMSIG00000005977 #16	Pold4 (ENSMSIG00000006171) #17	Clcf1 (ENSMSIG00000006192)	Rad9a (ENSMSIG00000006213) #18	Ppp1ca (ENSMSIG00000006291) #19	Tbc1d10c (ENSMSIG00000006331) #20	Carns1 (ENSMSIG00000006360) #21	Rps6kb2 (ENSMSIG00000006398) #22	Ptprcap (ENSMSIG00000006524) #23	Coro1b (ENSMSIG00000006535) #24	Gpr152 (ENSMSIG00000006566) #26	Cabp4 (ENSMSIG00000006571) #27	ENSMSIG00000006594 #28	ENSMSIG00000006607 #29	Pitpnm1 (ENSMSIG00000006623) #30	Cdk2ap2 (ENSMSIG00000006691) #31	ENSMSIG00000006735 #32	Gstp3 (ENSMSIG00000006920)
Mouse	MODERN SPECIES	10	Pcx (ENSMUSG00000024892) #9	2010003K11Rik (ENSMUSG00000042041) #10	Syt12 (ENSMUSG00000049303) #11	Rhod (ENSMUSG00000041845) #12	Kdm2a (ENSMUSG00000054611) #13	Grk2 (ENSMUSG00000024858) #14	Ankrd13d (ENSMUSG00000005986) #15	Ssh3 (ENSMUSG00000034616) #16	Pold4 (ENSMUSG00000024854) #17	Gm45928 (ENSMUSG00000117873)	Clcf1 (ENSMUSG00000040663)	Rad9a (ENSMUSG00000024824) #18	Ppp1ca (ENSMUSG00000040385) #19	Tbc1d10c (ENSMUSG00000040247) #20	Carns1 (ENSMUSG00000075289) #21	Rps6kb2 (ENSMUSG00000024830) #22	Ptprcap (ENSMUSG00000045826) #23	Coro1b (ENSMUSG00000024835) #24	Gpr152 (ENSMUSG00000044724) #26	Cabp4 (ENSMUSG00000024842) #27	Tmem134 (ENSMUSG00000024845) #28	Aip (ENSMUSG00000024847) #29	Pitpnm1 (ENSMUSG00000024851) #30	Cdk2ap2 (ENSMUSG00000024856) #31	Cabp2 (ENSMUSG00000024857) #32	Gstp3 (ENSMUSG00000058216)	Gstp2 (ENSMUSG00000038155) #33	Gstp1 (ENSMUSG00000060803) #33	Ndufv1 (ENSMUSG00000037916) #34	Doc2g (ENSMUSG00000024871) #35	Nudt8 (ENSMUSG00000110949)
Ryukyu mouse	MODERN SPECIES	10	Lrfn4 (MGP_CAROLIEiJ_G0022510) #8	Pcx (MGP_CAROLIEiJ_G0022509) #9	2010003K11Rik (MGP_CAROLIEiJ_G0022508) #10	Syt12 (MGP_CAROLIEiJ_G0022507) #11	MGP_CAROLIEiJ_G0022506 #12	Kdm2a (MGP_CAROLIEiJ_G0022505) #13	Grk2 (MGP_CAROLIEiJ_G0022504) #14	Ankrd13d (MGP_CAROLIEiJ_G0022503) #15	Ssh3 (MGP_CAROLIEiJ_G0022502) #16	Pold4 (MGP_CAROLIEiJ_G0022501) #17	Clcf1 (MGP_CAROLIEiJ_G0022500)	Rad9a (MGP_CAROLIEiJ_G0022499) #18	Ppp1ca (MGP_CAROLIEiJ_G0022498) #19	Tbc1d10c (MGP_CAROLIEiJ_G0022497) #20	Carns1 (MGP_CAROLIEiJ_G0022496) #21	Rps6kb2 (MGP_CAROLIEiJ_G0022495) #22	Ptprcap (MGP_CAROLIEiJ_G0022494) #23	Coro1b (MGP_CAROLIEiJ_G0022493) #24	Gpr152 (MGP_CAROLIEiJ_G0022492) #26	Cabp4 (MGP_CAROLIEiJ_G0022491) #27	Aip (MGP_CAROLIEiJ_G0022490) #29	Pitpnm1 (MGP_CAROLIEiJ_G0022489) #30	Cdk2ap2 (MGP_CAROLIEiJ_G0022488) #31	Cabp2 (MGP_CAROLIEiJ_G0022487) #32	Gstp3 (MGP_CAROLIEiJ_G0022486)	MGP_CAROLIEiJ_G0022485 #33	MGP_CAROLIEiJ_G0022484 #33	Ndufv1 (MGP_CAROLIEiJ_G0022483) #34	Doc2g (MGP_CAROLIEiJ_G0022482) #35	Nudt8 (MGP_CAROLIEiJ_G0022481)	Tbx10 (MGP_CAROLIEiJ_G0022480)
Shrew mouse	MODERN SPECIES		MGP_PahariEiJ_G0014006	Pcx (MGP_PahariEiJ_G0014005) #9	2010003K11Rik (MGP_PahariEiJ_G0014004) #10	Syt12 (MGP_PahariEiJ_G0014003) #11	MGP_PahariEiJ_G0014002 #12	Kdm2a (MGP_PahariEiJ_G0014001) #13	Grk2 (MGP_PahariEiJ_G0014000) #14	Ankrd13d (MGP_PahariEiJ_G0013999) #15	Ssh3 (MGP_PahariEiJ_G0013998) #16	Pold4 (MGP_PahariEiJ_G0013997) #17	Clcf1 (MGP_PahariEiJ_G0013996)	Rad9a (MGP_PahariEiJ_G0013995) #18	Ppp1ca (MGP_PahariEiJ_G0013994) #19	Tbc1d10c (MGP_PahariEiJ_G0013993) #20	Carns1 (MGP_PahariEiJ_G0013992) #21	Rps6kb2 (MGP_PahariEiJ_G0013991) #22	Ptprcap (MGP_PahariEiJ_G0013990) #23	MGP_PahariEiJ_G0013989 #24	Gpr152 (MGP_PahariEiJ_G0013988) #26	Cabp4 (MGP_PahariEiJ_G0013987) #27	Aip (MGP_PahariEiJ_G0013986) #29	Pitpnm1 (MGP_PahariEiJ_G0013985) #30	Cdk2ap2 (MGP_PahariEiJ_G0013984) #31	Cabp2 (MGP_PahariEiJ_G0013983) #32	Gstp3 (MGP_PahariEiJ_G0013982)	MGP_PahariEiJ_G0013981 #33	Ndufv1 (MGP_PahariEiJ_G0013980) #34	Doc2g (MGP_PahariEiJ_G0013979) #35	Nudt8 (MGP_PahariEiJ_G0013978)	Tbx10 (MGP_PahariEiJ_G0013977)	Acy3 (MGP_PahariEiJ_G0013976)
Rat	MODERN SPECIES		Pc (ENSRNOG00000019372) #9	ENSRNOG00000066174	LOC689065 (ENSRNOG00000036641) #10	Syt12 (ENSRNOG00000019306) #11	Rhod (ENSRNOG00000019220) #12	Kdm2a (ENSRNOG00000019145) #13	Grk2 (ENSRNOG00000018985) #14	Ankrd13d (ENSRNOG00000028247) #15	Ssh3 (ENSRNOG00000018878) #16	Pold4 (ENSRNOG00000018765) #17	Clcf1 (ENSRNOG00000018752)	Rad9a (ENSRNOG00000018729) #18	Ppp1ca (ENSRNOG00000018708) #19	Tbc1d10c (ENSRNOG00000021510) #20	Carns1 (ENSRNOG00000018603) #21	Rps6kb2 (ENSRNOG00000021689) #22	Ptprcap (ENSRNOG00000021724) #23	Coro1b (ENSRNOG00000021828) #24	Gpr152 (ENSRNOG00000021912) #26	Cabp4 (ENSRNOG00000022044) #27	Tmem134 (ENSRNOG00000022153) #28	Aip (ENSRNOG00000022289) #29	Pitpnm1 (ENSRNOG00000018553) #30	Cdk2ap2 (ENSRNOG00000018391) #31	Cabp2 (ENSRNOG00000018339) #32	Gstp3 (ENSRNOG00000018287)	Gstp1 (ENSRNOG00000018237) #33	Ndufv1 (ENSRNOG00000018117) #34	Doc2g (ENSRNOG00000018029) #35	Nudt8 (ENSRNOG00000017955)	Acy3 (ENSRNOG00000017901)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1818	Pcx (ENSNGAG00000012737) #9	Lrfn4 (ENSNGAG00000008243) #8	2010003K11Rik (ENSNGAG00000011755) #10	Syt12 (ENSNGAG00000014179) #11	Rhod (ENSNGAG00000014992) #12	Kdm2a (ENSNGAG00000019841) #13	Grk2 (ENSNGAG00000012384) #14	Ankrd13d (ENSNGAG00000020140) #15	Ssh3 (ENSNGAG00000000431) #16	Pold4 (ENSNGAG00000010450) #17	Clcf1 (ENSNGAG00000013064)	Rad9a (ENSNGAG00000018044) #18	ENSNGAG00000015301 #19	ENSNGAG00000020645 #20	Carns1 (ENSNGAG00000011168) #21	Rps6kb2 (ENSNGAG00000005545) #22	Ptprcap (ENSNGAG00000017126) #23	Coro1b (ENSNGAG00000019821) #24	Gpr152 (ENSNGAG00000008380) #26	Cabp4 (ENSNGAG00000015044) #27	Tmem134 (ENSNGAG00000017238) #28	Aip (ENSNGAG00000020330) #29	Pitpnm1 (ENSNGAG00000020386) #30	Cdk2ap2 (ENSNGAG00000007775) #31	Cabp2 (ENSNGAG00000014616) #32	Gstp3 (ENSNGAG00000000204)	ENSNGAG00000014047 #33	Ndufv1 (ENSNGAG00000013048) #34
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	87	ENSJJAG00000015982	ENSJJAG00000010414	ENSJJAG00000021580	ENSJJAG00000017306	Tmem123 (ENSJJAG00000014178)	Mmp7 (ENSJJAG00000009326)	Mmp20 (ENSJJAG00000020407)	Mmp27 (ENSJJAG00000011497)	Mmp8 (ENSJJAG00000021566)	ENSJJAG00000020496	ENSJJAG00000010013	Mmp12 (ENSJJAG00000019762)	Mmp13 (ENSJJAG00000013818)	Dcun1d5 (ENSJJAG00000004999)	Dync2h1 (ENSJJAG00000000557)	ENSJJAG00000016889 #22	Ddi1 (ENSJJAG00000000750)	Pdgfd (ENSJJAG00000020441)
Lesser Egyptian jerboa	MODERN SPECIES	138						ENSJJAG00000018862	Wrn (ENSJJAG00000015655)	Purg (ENSJJAG00000013136)	Tex15 (ENSJJAG00000013617)	ENSJJAG00000012832	ENSJJAG00000012013	Ubxn8 (ENSJJAG00000011389)	Gsr (ENSJJAG00000018464)	Gtf2e2 (ENSJJAG00000016660)	Rbpms (ENSJJAG00000014024)	ENSJJAG00000011948 #22	ENSJJAG00000010922	Dctn6 (ENSJJAG00000009554)	Mboat4 (ENSJJAG00000019709)	ENSJJAG00000018340	Saraf (ENSJJAG00000017570)	ENSJJAG00000016758	ENSJJAG00000016531	ENSJJAG00000013189	Dusp4 (ENSJJAG00000015845)	Tnks (ENSJJAG00000010315)	ENSJJAG00000000167	ENSJJAG00000022750	Ppp1r3b (ENSJJAG00000012925)	Eri1 (ENSJJAG00000015740)	Mfhas1 (ENSJJAG00000015209)
Lesser Egyptian jerboa	MODERN SPECIES	60	Pcx (ENSJJAG00000017866) #9	Lrfn4 (ENSJJAG00000023056) #8	2010003K11Rik (ENSJJAG00000024072) #10	Syt12 (ENSJJAG00000016544) #11	Rhod (ENSJJAG00000017719) #12	Kdm2a (ENSJJAG00000008785) #13	Grk2 (ENSJJAG00000007615) #14	Ankrd13d (ENSJJAG00000020972) #15	Ssh3 (ENSJJAG00000013515) #16	Pold4 (ENSJJAG00000015752) #17	Clcf1 (ENSJJAG00000019178)	Rad9a (ENSJJAG00000013292) #18	Ppp1ca (ENSJJAG00000010290) #19	Tbc1d10c (ENSJJAG00000004622) #20	Carns1 (ENSJJAG00000018930) #21	ENSJJAG00000016182 #22	ENSJJAG00000001838 #24	Gpr152 (ENSJJAG00000022981) #26	Cabp4 (ENSJJAG00000011101) #27	Tmem134 (ENSJJAG00000016692) #28	Aip (ENSJJAG00000015345) #29	ENSJJAG00000003374 #30	ENSJJAG00000013896 #31	Cabp2 (ENSJJAG00000018419) #32	Gstp3 (ENSJJAG00000024233)	ENSJJAG00000023512 #33	Ndufv1 (ENSJJAG00000017874) #34	Doc2g (ENSJJAG00000021341) #35	Nudt8 (ENSJJAG00000023328)	Tbx10 (ENSJJAG00000022634)	Acy3 (ENSJJAG00000019193)
Kangaroo rat	MODERN SPECIES	373	Lrfn4 (ENSDORG00000028933) #8	Pcx (ENSDORG00000011749) #9	2010003K11Rik (ENSDORG00000027059) #10	Syt12 (ENSDORG00000005678) #11	ENSDORG00000001980 #12	Kdm2a (ENSDORG00000011836) #13	Grk2 (ENSDORG00000010940) #14	Ankrd13d (ENSDORG00000010942) #15	Ssh3 (ENSDORG00000010943) #16	Pold4 (ENSDORG00000023882) #17	Clcf1 (ENSDORG00000015120)	Rad9a (ENSDORG00000012297) #18	ENSDORG00000012300 #19	Tbc1d10c (ENSDORG00000029199) #20	ENSDORG00000014541	Rps6kb2 (ENSDORG00000014540) #22	Ptprcap (ENSDORG00000014538) #23	ENSDORG00000014537 #24	Gpr152 (ENSDORG00000028173) #26	Cabp4 (ENSDORG00000014536) #27	Tmem134 (ENSDORG00000014535) #28	Aip (ENSDORG00000014533) #29	ENSDORG00000014531 #30	Cdk2ap2 (ENSDORG00000025739) #31	Cabp2 (ENSDORG00000014527) #32	Gstp3 (ENSDORG00000024771)	ENSDORG00000002063 #33	Ndufv1 (ENSDORG00000010074) #34	Doc2g (ENSDORG00000026896) #35	ENSDORG00000010072 #37	Tbx10 (ENSDORG00000010070)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435	ENSGT00390000010641 #34	ENSGT00940000163889 #37	ENSGT00940000163374	ENSGT01100000264273
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Hedgehog	MODERN SPECIES	7032																RPS6KB2 (ENSEEUG00000014743) #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.a	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.a	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Suina	ANCESTRAL SPECIES	14	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Chacoan peccary	MODERN SPECIES	921	LRFN4 (ENSCWAG00000008478) #8	PC (ENSCWAG00000008265) #9	C11orf86 (ENSCWAG00000008199) #10	SYT12 (ENSCWAG00000008167) #11	RHOD (ENSCWAG00000008096) #12	KDM2A (ENSCWAG00000007851) #13	GRK2 (ENSCWAG00000007774) #14	ANKRD13D (ENSCWAG00000007724) #15	ENSCWAG00000007703 #16	POLD4 (ENSCWAG00000007670) #17	CLCF1 (ENSCWAG00000007645)	RAD9A (ENSCWAG00000007635) #18	ENSCWAG00000007570 #19	TBC1D10C (ENSCWAG00000007510) #20	CARNS1 (ENSCWAG00000007375) #21	RPS6KB2 (ENSCWAG00000007341) #22	PTPRCAP (ENSCWAG00000007330) #23	CORO1B (ENSCWAG00000007304) #24	GPR152 (ENSCWAG00000007292) #26	CABP4 (ENSCWAG00000007263) #27	TMEM134 (ENSCWAG00000007220) #28	AIP (ENSCWAG00000007192) #29	PITPNM1 (ENSCWAG00000007166) #30	CDK2AP2 (ENSCWAG00000007150) #31	CABP2 (ENSCWAG00000007074) #32	ENSCWAG00000007049	ENSCWAG00000007036	NDUFV1 (ENSCWAG00000006939) #34	ENSCWAG00000006879 #35	ENSCWAG00000006858	TBX10 (ENSCWAG00000006811)
Pig	MODERN SPECIES	10	LRFN4 (ENSSSCG00000039360) #8	PC (ENSSSCG00000012926) #9	C11orf86 (ENSSSCG00000040729) #10	SYT12 (ENSSSCG00000024837) #11	RHOD (ENSSSCG00000022726) #12	KDM2A (ENSSSCG00000029637) #13	GRK2 (ENSSSCG00000012918) #14	ANKRD13D (ENSSSCG00000012917) #15	SSH3 (ENSSSCG00000027956) #16	POLD4 (ENSSSCG00000012916) #17	CLCF1 (ENSSSCG00000012915)	RAD9A (ENSSSCG00000012914) #18	PPP1CA (ENSSSCG00000012913) #19	TBC1D10C (ENSSSCG00000012912) #20	CARNS1 (ENSSSCG00000012911) #21	RPS6KB2 (ENSSSCG00000012910) #22	PTPRCAP (ENSSSCG00000012909) #23	CORO1B (ENSSSCG00000012920) #24	GPR152 (ENSSSCG00000059139) #26	CABP4 (ENSSSCG00000012906) #27	TMEM134 (ENSSSCG00000012905) #28	AIP (ENSSSCG00000062981) #29	PITPNM1 (ENSSSCG00000012903) #30	CDK2AP2 (ENSSSCG00000012902) #31	CABP2 (ENSSSCG00000020764) #32	ENSSSCG00000060071	ENSSSCG00000032003	NDUFV1 (ENSSSCG00000012896) #34	ENSSSCG00000052603 #35	ENSSSCG00000035645	TBX10 (ENSSSCG00000034410)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.a	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00990000213493	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00990000213493	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Dolphin	MODERN SPECIES	1942												RAD9A (ENSTTRG00000013208) #18	PPP1CA (ENSTTRG00000013233) #19	TBC1D10C (ENSTTRG00000013242) #20	ENSTTRG00000013249 #21	RPS6KB2 (ENSTTRG00000013251) #22	PTPRCAP (ENSTTRG00000013255) #23	CORO1B (ENSTTRG00000013257) #24	GPR152 (ENSTTRG00000013260) #26	CABP4 (ENSTTRG00000013261) #27	TMEM134 (ENSTTRG00000013264) #28	AIP (ENSTTRG00000013265) #29	PITPNM1 (ENSTTRG00000013267) #30	CDK2AP2 (ENSTTRG00000013268) #31	CABP2 (ENSTTRG00000013269) #32
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00990000213493	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Vaquita	MODERN SPECIES	19	LRFN4 (ENSPSNG00000009462) #8	C11orf86 (ENSPSNG00000009497) #10	SYT12 (ENSPSNG00000009530) #11	RHOD (ENSPSNG00000009571) #12	KDM2A (ENSPSNG00000009654) #13	ENSPSNG00000009745	GRK2 (ENSPSNG00000009809) #14	ANKRD13D (ENSPSNG00000009916) #15	SSH3 (ENSPSNG00000010029) #16	POLD4 (ENSPSNG00000010304) #17	CLCF1 (ENSPSNG00000010372)	RAD9A (ENSPSNG00000010444) #18	PPP1CA (ENSPSNG00000010502) #19	TBC1D10C (ENSPSNG00000010641) #20	CARNS1 (ENSPSNG00000010738) #21	RPS6KB2 (ENSPSNG00000010990) #22	PTPRCAP (ENSPSNG00000011039) #23	CORO1B (ENSPSNG00000011096) #24	GPR152 (ENSPSNG00000011149) #26	CABP4 (ENSPSNG00000011189) #27	TMEM134 (ENSPSNG00000011362) #28	AIP (ENSPSNG00000011463) #29	PITPNM1 (ENSPSNG00000011535) #30	CDK2AP2 (ENSPSNG00000011634) #31	CABP2 (ENSPSNG00000011691) #32	ENSPSNG00000011890	ENSPSNG00000012038	NDUFV1 (ENSPSNG00000012099) #34	ENSPSNG00000012192	TBX10 (ENSPSNG00000012218)	ALDH3B2 (ENSPSNG00000012373)
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00990000213493	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Beluga whale	MODERN SPECIES	7	CUNH11orf86 (ENSDLEG00000000442) #10	SYT12 (ENSDLEG00000000409) #11	RHOD (ENSDLEG00000000384) #12	ENSDLEG00000000367	KDM2A (ENSDLEG00000000327) #13	GRK2 (ENSDLEG00000000303) #14	ANKRD13D (ENSDLEG00000000230) #15	SSH3 (ENSDLEG00000000182) #16	ENSDLEG00000000120 #17	CLCF1 (ENSDLEG00000000088)	RAD9A (ENSDLEG00000000070) #18	PPP1CA (ENSDLEG00000000041) #19	TBC1D10C (ENSDLEG00000007507) #20	CARNS1 (ENSDLEG00000007504) #21	PTPRCAP (ENSDLEG00000007502) #23	RPS6KB2 (ENSDLEG00000007496) #22	CORO1B (ENSDLEG00000007489) #24	GPR152 (ENSDLEG00000007487) #26	CABP4 (ENSDLEG00000007479) #27	TMEM134 (ENSDLEG00000007472) #28	AIP (ENSDLEG00000007462) #29	PITPNM1 (ENSDLEG00000007424) #30	CDK2AP2 (ENSDLEG00000007407) #31	CABP2 (ENSDLEG00000007398) #32	ENSDLEG00000007392	ENSDLEG00000007379	NDUFV1 (ENSDLEG00000007370) #34	ENSDLEG00000007368 #35	ENSDLEG00000007357	TBX10 (ENSDLEG00000007345)	ENSDLEG00000007341
Narwhal	MODERN SPECIES	314	LRFN4 (ENSMMNG00015018834) #8	C11orf86 (ENSMMNG00015018854) #10	SYT12 (ENSMMNG00015018879) #11	RHOD (ENSMMNG00015018920) #12	KDM2A (ENSMMNG00015018962) #13	ENSMMNG00015019015	GRK2 (ENSMMNG00015019044) #14	ANKRD13D (ENSMMNG00015019115) #15	SSH3 (ENSMMNG00015019247) #16	POLD4 (ENSMMNG00015019361) #17	CLCF1 (ENSMMNG00015019402)	RAD9A (ENSMMNG00015019448) #18	PPP1CA (ENSMMNG00015019512) #19	TBC1D10C (ENSMMNG00015019565) #20	CARNS1 (ENSMMNG00015019617) #21	RPS6KB2 (ENSMMNG00015019710) #22	PTPRCAP (ENSMMNG00015019739) #23	CORO1B (ENSMMNG00015019765) #24	GPR152 (ENSMMNG00015019803) #26	CABP4 (ENSMMNG00015019821) #27	TMEM134 (ENSMMNG00015019872) #28	AIP (ENSMMNG00015019982) #29	PITPNM1 (ENSMMNG00015020033) #30	CDK2AP2 (ENSMMNG00015020090) #31	CABP2 (ENSMMNG00015020136) #32	ENSMMNG00015020200	ENSMMNG00015020229	NDUFV1 (ENSMMNG00015020258) #34	ENSMMNG00015020291 #35	ENSMMNG00015020305	TBX10 (ENSMMNG00015020328)
Sperm whale	MODERN SPECIES	97												RAD9A (ENSPCTG00005022584) #18	PPP1CA (ENSPCTG00005022585) #19	TBC1D10C (ENSPCTG00005022589) #20	CARNS1 (ENSPCTG00005022594) #21	RPS6KB2 (ENSPCTG00005022597) #22	PTPRCAP (ENSPCTG00005022598) #23	CORO1B (ENSPCTG00005022599) #24	GPR152 (ENSPCTG00005022600) #26	CABP4 (ENSPCTG00005022601) #27	TMEM134 (ENSPCTG00005022602) #28	AIP (ENSPCTG00005022604) #29	PITPNM1 (ENSPCTG00005022605) #30	CDK2AP2 (ENSPCTG00005022607) #31	CABP2 (ENSPCTG00005022608) #32	ENSPCTG00005022609
Blue whale	MODERN SPECIES	19	PC (ENSBMSG00010011036) #9	LRFN4 (ENSBMSG00010011109) #8	C11orf86 (ENSBMSG00010011115) #10	SYT12 (ENSBMSG00010011123) #11	RHOD (ENSBMSG00010011143) #12	KDM2A (ENSBMSG00010004384) #13	GRK2 (ENSBMSG00010004418) #14	ANKRD13D (ENSBMSG00010004465) #15	SSH3 (ENSBMSG00010004481) #16	POLD4 (ENSBMSG00010004525) #17	CLCF1 (ENSBMSG00010004545)	RAD9A (ENSBMSG00010004558) #18	PPP1CA (ENSBMSG00010004585) #19	TBC1D10C (ENSBMSG00010004620) #20	CARNS1 (ENSBMSG00010004657) #21	RPS6KB2 (ENSBMSG00010004688) #22	PTPRCAP (ENSBMSG00010004698) #23	CORO1B (ENSBMSG00010004704) #24	CABP4 (ENSBMSG00010004718) #27	TMEM134 (ENSBMSG00010004736) #28	AIP (ENSBMSG00010004756) #29	PITPNM1 (ENSBMSG00010004775) #30	CABP2 (ENSBMSG00010004797) #32	ENSBMSG00010004811	ENSBMSG00010004827	NDUFV1 (ENSBMSG00010004841) #34	ENSBMSG00010004866 #35	ENSBMSG00010004879	TBX10 (ENSBMSG00010004883)	ALDH3B2 (ENSBMSG00010004892)	UNC93B1 (ENSBMSG00010004898)
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Bovinae	ANCESTRAL SPECIES	24	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Bos	ANCESTRAL SPECIES	11	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Bos_b	ANCESTRAL SPECIES	10	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00990000213493	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000154816.a.a
Cow	MODERN SPECIES	21	PC (ENSBTAG00000019700) #9	LRFN4 (ENSBTAG00000037404) #8	C29H11orf86 (ENSBTAG00000022246) #10	SYT12 (ENSBTAG00000003369) #11	RHOD (ENSBTAG00000020600) #12	KDM2A (ENSBTAG00000044032) #13	GRK2 (ENSBTAG00000005832) #14	ANKRD13D (ENSBTAG00000012200) #15	SSH3 (ENSBTAG00000031590) #16	POLD4 (ENSBTAG00000017951) #17	CLCF1 (ENSBTAG00000046110)	RAD9A (ENSBTAG00000012141) #18	PPP1CA (ENSBTAG00000012146) #19	TBC1D10C (ENSBTAG00000013133) #20	CARNS1 (ENSBTAG00000017690) #21	RPS6KB2 (ENSBTAG00000009175) #22	PTPRCAP (ENSBTAG00000004782) #23	CORO1B (ENSBTAG00000004783) #24	GPR152 (ENSBTAG00000046728) #26	CABP4 (ENSBTAG00000004785) #27	TMEM134 (ENSBTAG00000004786) #28	AIP (ENSBTAG00000010478) #29	PITPNM1 (ENSBTAG00000010482) #30	CDK2AP2 (ENSBTAG00000002121) #31	CABP2 (ENSBTAG00000022209) #32	GSTP1 (ENSBTAG00000003548)	GSTP1 (ENSBTAG00000051210)	NDUFV1 (ENSBTAG00000021776) #34	DOC2G (ENSBTAG00000021777) #35	TBX10 (ENSBTAG00000011816)	ENSBTAG00000012054
Hybrid Bos Indicus	MODERN SPECIES	21	PC (ENSBIXG00005003262) #9	C11orf86 (ENSBIXG00005003292) #10	SYT12 (ENSBIXG00005020079) #11	RHOD (ENSBIXG00005007831) #12	ENSBIXG00005006820	KDM2A (ENSBIXG00005003324) #13	GRK2 (ENSBIXG00005003344) #14	ANKRD13D (ENSBIXG00005020219) #15	SSH3 (ENSBIXG00005020249) #16	ENSBIXG00005007206 #17	ENSBIXG00005005868	RAD9A (ENSBIXG00005020343) #18	PPP1CA (ENSBIXG00005003445) #19	TBC1D10C (ENSBIXG00005020430) #20	CARNS1 (ENSBIXG00005020507) #21	RPS6KB2 (ENSBIXG00005007154) #22	PTPRCAP (ENSBIXG00005020556) #23	CORO1B (ENSBIXG00005020573) #24	GPR152 (ENSBIXG00005007302) #26	CABP4 (ENSBIXG00005003484) #27	TMEM134 (ENSBIXG00005003498) #28	AIP (ENSBIXG00005020736) #29	PITPNM1 (ENSBIXG00005003531) #30	ENSBIXG00005020965 #31	CABP2 (ENSBIXG00005021047) #32	ENSBIXG00005021109	ENSBIXG00005021129	NDUFV1 (ENSBIXG00005021193) #34	ENSBIXG00005007675 #35	TBX10 (ENSBIXG00005021245)	ENSBIXG00005021275
Bos_a	ANCESTRAL SPECIES	34	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Wild yak	MODERN SPECIES	1533	PC (ENSBMUG00000021167) #9	LRFN4 (ENSBMUG00000021186) #8	C11orf86 (ENSBMUG00000021198) #10	SYT12 (ENSBMUG00000021201) #11	RHOD (ENSBMUG00000021222) #12	KDM2A (ENSBMUG00000021299) #13	GRK2 (ENSBMUG00000021371) #14	ANKRD13D (ENSBMUG00000021387) #15	SSH3 (ENSBMUG00000021417) #16	POLD4 (ENSBMUG00000021428) #17	CLCF1 (ENSBMUG00000021437)	RAD9A (ENSBMUG00000021453) #18	PPP1CA (ENSBMUG00000021462) #19	TBC1D10C (ENSBMUG00000021479) #20	CARNS1 (ENSBMUG00000021512) #21	RPS6KB2 (ENSBMUG00000021523) #22	ENSBMUG00000021528 #23	CORO1B (ENSBMUG00000021562) #24	GPR152 (ENSBMUG00000021581) #26	CABP4 (ENSBMUG00000021589) #27	ENSBMUG00000021649 #28	AIP (ENSBMUG00000021692) #29	PITPNM1 (ENSBMUG00000021743) #30	CDK2AP2 (ENSBMUG00000021758) #31	CABP2 (ENSBMUG00000021781) #32	ENSBMUG00000021831	NDUFV1 (ENSBMUG00000021947) #34	ENSBMUG00000021996 #35	ENSBMUG00000022014	TBX10 (ENSBMUG00000022029)	ALDH3B2 (ENSBMUG00000022044)
American bison	MODERN SPECIES	3011	LRFN4 (ENSBBBG00000011017) #8	PC (ENSBBBG00000007348) #9	C11orf86 (ENSBBBG00000001988) #10	SYT12 (ENSBBBG00000007588) #11	RHOD (ENSBBBG00000011071) #12	KDM2A (ENSBBBG00000011108) #13	GRK2 (ENSBBBG00000011178) #14	ANKRD13D (ENSBBBG00000011220) #15	SSH3 (ENSBBBG00000011241) #16	POLD4 (ENSBBBG00000011249) #17	CLCF1 (ENSBBBG00000011254)	RAD9A (ENSBBBG00000011271) #18	PPP1CA (ENSBBBG00000002073) #19	TBC1D10C (ENSBBBG00000002019) #20	ENSBBBG00000011410	RPS6KB2 (ENSBBBG00000011423) #22	PTPRCAP (ENSBBBG00000011426) #23	CORO1B (ENSBBBG00000011439) #24	GPR152 (ENSBBBG00000008097) #26	CABP4 (ENSBBBG00000011461) #27	TMEM134 (ENSBBBG00000011488) #28	AIP (ENSBBBG00000011499) #29	PITPNM1 (ENSBBBG00000011566) #30	CDK2AP2 (ENSBBBG00000011578) #31	CABP2 (ENSBBBG00000002134) #32	ENSBBBG00000011647	ENSBBBG00000011688	NDUFV1 (ENSBBBG00000006837) #34	ENSBBBG00000002170	TBX10 (ENSBBBG00000011733)	ALDH3B2 (ENSBBBG00000011745)
Caprinae	ANCESTRAL SPECIES	20	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000163374.g
Rambouillet Sheep	MODERN SPECIES	13	PC (ENSOARG00020009705) #9	LRFN4 (ENSOARG00020009872) #8	C11orf86 (ENSOARG00020009905) #10	SYT12 (ENSOARG00020009939) #11	RHOD (ENSOARG00020010142) #12	KDM2A (ENSOARG00020010294) #13	GRK2 (ENSOARG00020010768) #14	ANKRD13D (ENSOARG00020011036) #15	ENSOARG00020011311 #16	POLD4 (ENSOARG00020011352) #17	CLCF1 (ENSOARG00020011455)	RAD9A (ENSOARG00020011511) #18	PPP1CA (ENSOARG00020011637) #19	TBC1D10C (ENSOARG00020011852) #20	ENSOARG00020011906	RPS6KB2 (ENSOARG00020012258) #22	PTPRCAP (ENSOARG00020012324) #23	CORO1B (ENSOARG00020012381) #24	GPR152 (ENSOARG00020012440) #26	CABP4 (ENSOARG00020012475) #27	TMEM134 (ENSOARG00020012668) #28	AIP (ENSOARG00020012864) #29	PITPNM1 (ENSOARG00020012916) #30	CDK2AP2 (ENSOARG00020013021) #31	CABP2 (ENSOARG00020013080) #32	ENSOARG00020013368	ENSOARG00020013487	NDUFV1 (ENSOARG00020013585) #34	ENSOARG00020013607 #35	NUDT8 (ENSOARG00020013703) #37	TBX10 (ENSOARG00020013801)
Goat	MODERN SPECIES	21	KCNK4 (ENSCHIG00000026272)	GPR137 (ENSCHIG00000017382)	BAD (ENSCHIG00000015400)	PLCB3 (ENSCHIG00000019547)	ENSCHIG00000019416	ENSCHIG00000026323	VEGFB (ENSCHIG00000024766)	DNAJC4 (ENSCHIG00000023580)	NUDT22 (ENSCHIG00000016120)	TRPT1 (ENSCHIG00000021308)	FERMT3 (ENSCHIG00000024155)	ENSCHIG00000010802	FLRT1 (ENSCHIG00000004163)	ENSCHIG00000024098	PTPRCAP (ENSCHIG00000009500) #23	RPS6KB2 (ENSCHIG00000009327) #22	CORO1B (ENSCHIG00000017528) #24	MACROD1 (ENSCHIG00000019953)	ENSCHIG00000014256	COX8A (ENSCHIG00000024147)	NAA40 (ENSCHIG00000010908)	RCOR2 (ENSCHIG00000015292)	MARK2 (ENSCHIG00000019875)	SPINDOC (ENSCHIG00000009623)	ZFTA (ENSCHIG00000022847)	ENSCHIG00000014185	ATL3 (ENSCHIG00000022420)	ENSCHIG00000024459	ENSCHIG00000014874	ENSCHIG00000016166	ENSCHIG00000003540
Siberian musk deer	MODERN SPECIES	1226	LRFN4 (ENSMMSG00000024045) #8	PC (ENSMMSG00000024035) #9	C11orf86 (ENSMMSG00000024029) #10	SYT12 (ENSMMSG00000024019) #11	RHOD (ENSMMSG00000024003) #12	KDM2A (ENSMMSG00000023992) #13	GRK2 (ENSMMSG00000023970) #14	ANKRD13D (ENSMMSG00000023954) #15	SSH3 (ENSMMSG00000023947) #16	POLD4 (ENSMMSG00000023941) #17	CLCF1 (ENSMMSG00000023932)	RAD9A (ENSMMSG00000023915) #18	PPP1CA (ENSMMSG00000023894) #19	TBC1D10C (ENSMMSG00000023882) #20	CARNS1 (ENSMMSG00000023862) #21	RPS6KB2 (ENSMMSG00000023844) #22	PTPRCAP (ENSMMSG00000023838) #23	CORO1B (ENSMMSG00000023829) #24	GPR152 (ENSMMSG00000023822) #26	CABP4 (ENSMMSG00000023807) #27	ENSMMSG00000023795 #28	AIP (ENSMMSG00000023787) #29	PITPNM1 (ENSMMSG00000023779) #30	CDK2AP2 (ENSMMSG00000023774) #31	CABP2 (ENSMMSG00000023763) #32	ENSMMSG00000023744	ENSMMSG00000023730	NDUFV1 (ENSMMSG00000023713) #34	ENSMMSG00000023708 #35	ENSMMSG00000023706	ENSMMSG00000023700
Yarkand deer	MODERN SPECIES	11	ENSCHYG00000002374	C11orf86 (ENSCHYG00000002389) #10	SYT12 (ENSCHYG00000002401) #11	ENSCHYG00000002427 #12	KDM2A (ENSCHYG00000002464) #13	GRK2 (ENSCHYG00000002521) #14	ANKRD13D (ENSCHYG00000002568) #15	SSH3 (ENSCHYG00000002620) #16	ENSCHYG00000002718	ENSCHYG00000002737 #17	CLCF1 (ENSCHYG00000002752)	RAD9A (ENSCHYG00000002779) #18	PPP1CA (ENSCHYG00000002815) #19	TBC1D10C (ENSCHYG00000002870) #20	CARNS1 (ENSCHYG00000002924) #21	RPS6KB2 (ENSCHYG00000002967) #22	PTPRCAP (ENSCHYG00000002984) #23	CORO1B (ENSCHYG00000002991) #24	GPR152 (ENSCHYG00000003011) #26	CABP4 (ENSCHYG00000003019) #27	TMEM134 (ENSCHYG00000003047) #28	AIP (ENSCHYG00000003119) #29	PITPNM1 (ENSCHYG00000003166) #30	CDK2AP2 (ENSCHYG00000003302) #31	CABP2 (ENSCHYG00000003335) #32	ENSCHYG00000003387	ENSCHYG00000003427	NDUFV1 (ENSCHYG00000003440) #34	ENSCHYG00000003458 #35	ENSCHYG00000003477	TBX10 (ENSCHYG00000003486)
Camelidae	ANCESTRAL SPECIES	18	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.e.a	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000163374.g	ENSGT00940000155904.e.b
Arabian camel	MODERN SPECIES	1	LRFN4 (ENSCDRG00005013734) #8	C11orf86 (ENSCDRG00005013704) #10	PC (ENSCDRG00005013184) #9	SYT12 (ENSCDRG00005013137) #11	RHOD (ENSCDRG00005013055) #12	KDM2A (ENSCDRG00005012715) #13	GRK2 (ENSCDRG00005012468) #14	ANKRD13D (ENSCDRG00005012263) #15	SSH3 (ENSCDRG00005012079) #16	POLD4 (ENSCDRG00005011964) #17	CLCF1 (ENSCDRG00005011923)	RAD9A (ENSCDRG00005011885) #18	PPP1CA (ENSCDRG00005011737) #19	TBC1D10C (ENSCDRG00005011591) #20	CARNS1 (ENSCDRG00005011445) #21	RPS6KB2 (ENSCDRG00005011373) #22	CORO1B (ENSCDRG00005011291) #24	GPR152 (ENSCDRG00005011272) #26	CABP4 (ENSCDRG00005011171) #27	ENSCDRG00005010854 #28	AIP (ENSCDRG00005010788) #29	PITPNM1 (ENSCDRG00005010686) #30	CDK2AP2 (ENSCDRG00005010661) #31	CABP2 (ENSCDRG00005010465) #32	ENSCDRG00005010431	GSTP1-1 (ENSCDRG00005010333)	NDUFV1 (ENSCDRG00005010077) #34	ENSCDRG00005010025 #35	NUDT8 (ENSCDRG00005009988) #37	ENSCDRG00005009949	ALDH3B2 (ENSCDRG00005009823)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Carnivora	ANCESTRAL SPECIES	7	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Caniformia	ANCESTRAL SPECIES	21	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Ursidae	ANCESTRAL SPECIES	2	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468.b #27	ENSGT00950000185478	ENSGT00940000167974.a	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125.b	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775
Ursus	ANCESTRAL SPECIES	21	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468.b #27	ENSGT00390000011766 #28	ENSGT00940000167974.a	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125.b.b.b	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
American black bear	MODERN SPECIES	686					KDM2A (ENSUAMG00000005867) #13	GRK2 (ENSUAMG00000005864) #14	ENSUAMG00000005862 #15	ENSUAMG00000005860 #15	SSH3 (ENSUAMG00000005856) #16	ENSUAMG00000005854 #17	CLCF1 (ENSUAMG00000005852)	ENSUAMG00000005849 #18	ENSUAMG00000005846 #19	TBC1D10C (ENSUAMG00000005844) #20	CARNS1 (ENSUAMG00000005842) #21	RPS6KB2 (ENSUAMG00000005838) #22	CORO1B (ENSUAMG00000005827) #24	GPR152 (ENSUAMG00000005821) #26	CABP4 (ENSUAMG00000005819) #27	TMEM134 (ENSUAMG00000005817) #28	ENSUAMG00000005815	AIP (ENSUAMG00000005812) #29	PITPNM1 (ENSUAMG00000005674) #30	CDK2AP2 (ENSUAMG00000005659) #31	CABP2 (ENSUAMG00000005653) #32	ENSUAMG00000005646
Polar bear	MODERN SPECIES	328	RCE1 (ENSUMAG00000011874) #7	PC (ENSUMAG00000011905) #9	LRFN4 (ENSUMAG00000011918) #8	C11orf86 (ENSUMAG00000011922) #10	SYT12 (ENSUMAG00000011928) #11	RHOD (ENSUMAG00000011937) #12	KDM2A (ENSUMAG00000011947) #13	GRK2 (ENSUMAG00000011985) #14	ANKRD13D (ENSUMAG00000012336) #15	SSH3 (ENSUMAG00000012376) #16	POLD4 (ENSUMAG00000012424) #17	CLCF1 (ENSUMAG00000012426)	RAD9A (ENSUMAG00000012428) #18	PPP1CA (ENSUMAG00000012448) #19	TBC1D10C (ENSUMAG00000012480) #20	RPS6KB2 (ENSUMAG00000012544) #22	CORO1B (ENSUMAG00000012896) #24	CABP4 (ENSUMAG00000012943) #27	ENSUMAG00000012948	AIP (ENSUMAG00000012949) #29	PITPNM1 (ENSUMAG00000012967) #30	CDK2AP2 (ENSUMAG00000013035) #31	CABP2 (ENSUMAG00000013041) #32	ENSUMAG00000013046	ENSUMAG00000013053	NDUFV1 (ENSUMAG00000013061) #34	ENSUMAG00000013065 #35	NUDT8 (ENSUMAG00000013078) #37	ENSUMAG00000013092	ENSUMAG00000013104	UNC93B1 (ENSUMAG00000013118)
Giant Panda	MODERN SPECIES	7	PC (ENSAMEG00000010752) #9	LRFN4 (ENSAMEG00000024850) #8	C11orf86 (ENSAMEG00000010744) #10	SYT12 (ENSAMEG00000010734) #11	RHOD (ENSAMEG00000025899) #12	KDM2A (ENSAMEG00000000531) #13	GRK2 (ENSAMEG00000000597) #14	ANKRD13D (ENSAMEG00000000669) #15	SSH3 (ENSAMEG00000000713) #16	RAD9A (ENSAMEG00000000743) #18	POLD4 (ENSAMEG00000000732) #17	CLCF1 (ENSAMEG00000000739)	PPP1CA (ENSAMEG00000000758) #19	TBC1D10C (ENSAMEG00000000778) #20	ENSAMEG00000000816	RPS6KB2 (ENSAMEG00000000822) #22	PTPRCAP (ENSAMEG00000000855) #23	CORO1B (ENSAMEG00000000857) #24	GPR152 (ENSAMEG00000000918) #26	CABP4 (ENSAMEG00000000919) #27	ENSAMEG00000026647	ENSAMEG00000028957	AIP (ENSAMEG00000000937) #29	PITPNM1 (ENSAMEG00000000948) #30	CDK2AP2 (ENSAMEG00000001002) #31	CABP2 (ENSAMEG00000001006) #32	ENSAMEG00000001020	NDUFV1 (ENSAMEG00000001049) #34	ENSAMEG00000001078 #35	ENSAMEG00000027070	TBX10 (ENSAMEG00000001098)
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
American mink	MODERN SPECIES	104	RCE1 (ENSNVIG00000013666) #7	PC (ENSNVIG00000013613) #9	C11orf86 (ENSNVIG00000013594) #10	SYT12 (ENSNVIG00000013581) #11	RHOD (ENSNVIG00000013566) #12	KDM2A (ENSNVIG00000013530) #13	ENSNVIG00000013483 #14	ANKRD13D (ENSNVIG00000013469) #15	SSH3 (ENSNVIG00000013393) #16	POLD4 (ENSNVIG00000013376) #17	CLCF1 (ENSNVIG00000013368)	RAD9A (ENSNVIG00000013356) #18	ENSNVIG00000013346 #19	TBC1D10C (ENSNVIG00000013336) #20	CARNS1 (ENSNVIG00000013255) #21	RPS6KB2 (ENSNVIG00000013220) #22	PTPRCAP (ENSNVIG00000013201) #23	CORO1B (ENSNVIG00000013189) #24	GPR152 (ENSNVIG00000013164) #26	CABP4 (ENSNVIG00000013152) #27	TMEM134 (ENSNVIG00000013113) #28	AIP (ENSNVIG00000013080) #29	PITPNM1 (ENSNVIG00000012984) #30	CDK2AP2 (ENSNVIG00000012971) #31	CABP2 (ENSNVIG00000012930) #32	ENSNVIG00000012900	ENSNVIG00000012875	NDUFV1 (ENSNVIG00000012828) #34	ENSNVIG00000012818	ENSNVIG00000012787 #35	TBX10 (ENSNVIG00000012771)
Ferret	MODERN SPECIES	233	LRFN4 (ENSMPUG00000003592) #8	C11orf86 (ENSMPUG00000003599) #10	SYT12 (ENSMPUG00000003609) #11	ENSMPUG00000003623	RHOD (ENSMPUG00000003632) #12	KDM2A (ENSMPUG00000003692) #13	GRK2 (ENSMPUG00000003703) #14	ANKRD13D (ENSMPUG00000003716) #15	SSH3 (ENSMPUG00000003722) #16	POLD4 (ENSMPUG00000003768) #17	CLCF1 (ENSMPUG00000003783)	RAD9A (ENSMPUG00000003789) #18	PPP1CA (ENSMPUG00000003801) #19	TBC1D10C (ENSMPUG00000003862) #20	ENSMPUG00000003876	RPS6KB2 (ENSMPUG00000003899) #22	PTPRCAP (ENSMPUG00000019028) #23	CORO1B (ENSMPUG00000003912) #24	CABP4 (ENSMPUG00000003919) #27	TMEM134 (ENSMPUG00000003942) #28	AIP (ENSMPUG00000003950) #29	PITPNM1 (ENSMPUG00000003958) #30	CABP2 (ENSMPUG00000003977) #32	ENSMPUG00000004023	ENSMPUG00000004029	NDUFV1 (ENSMPUG00000004041) #34	ENSMPUG00000004052 #35	ENSMPUG00000004064	TBX10 (ENSMPUG00000004076)	ENSMPUG00000004086	UNC93B1 (ENSMPUG00000004165)
Canidae	ANCESTRAL SPECIES	13	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000162517.e.a	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000162517.e.a.a	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.e.a.b.a.b	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Dingo	MODERN SPECIES	36	LRFN4 (ENSCAFG00020022894) #8	C11orf86 (ENSCAFG00020022895) #10	ENSCAFG00020022897	SYT12 (ENSCAFG00020022898) #11	RHOD (ENSCAFG00020022899) #12	KDM2A (ENSCAFG00020022902) #13	GRK2 (ENSCAFG00020022904) #14	ANKRD13D (ENSCAFG00020022908) #15	SSH3 (ENSCAFG00020001411) #16	POLD4 (ENSCAFG00020001435) #17	CLCF1 (ENSCAFG00020001441)	RAD9A (ENSCAFG00020001462) #18	PPP1CA (ENSCAFG00020001475) #19	TBC1D10C (ENSCAFG00020001477) #20	CARNS1 (ENSCAFG00020001494) #21	RPS6KB2 (ENSCAFG00020001528) #22	PTPRCAP (ENSCAFG00020001549) #23	CORO1B (ENSCAFG00020001558) #24	GPR152 (ENSCAFG00020001563) #26	CABP4 (ENSCAFG00020001570) #27	ENSCAFG00020001594	AIP (ENSCAFG00020001604) #29	PITPNM1 (ENSCAFG00020001608) #30	CDK2AP2 (ENSCAFG00020001620) #31	CABP2 (ENSCAFG00020001633) #32	ENSCAFG00020001669	ENSCAFG00020001675	ENSCAFG00020001698 #34	ENSCAFG00020001779 #35	NUDT8 (ENSCAFG00020001816) #37	TBX10 (ENSCAFG00020001823)
Dog	MODERN SPECIES	9	PC (ENSCAFG00845011738) #9	C11orf86 (ENSCAFG00845011701) #10	ENSCAFG00845011693	SYT12 (ENSCAFG00845011643) #11	RHOD (ENSCAFG00845011598) #12	KDM2A (ENSCAFG00845011373) #13	GRK2 (ENSCAFG00845011204) #14	ANKRD13D (ENSCAFG00845011061) #15	SSH3 (ENSCAFG00845010891) #16	ENSCAFG00845010800	CLCF1 (ENSCAFG00845010717)	ENSCAFG00845010617 #18	PPP1CA (ENSCAFG00845010538) #19	TBC1D10C (ENSCAFG00845010400) #20	CARNS1 (ENSCAFG00845010337) #21	RPS6KB2 (ENSCAFG00845010235) #22	PTPRCAP (ENSCAFG00845010092) #24	GPR152 (ENSCAFG00845010047) #26	CABP4 (ENSCAFG00845009983) #27	TMEM134 (ENSCAFG00845009895) #28	AIP (ENSCAFG00845009822) #29	CDK2AP2 (ENSCAFG00845009575) #30	CABP2 (ENSCAFG00845009417) #32	ENSCAFG00845009326	GSTP1 (ENSCAFG00845009240)	NDUFV1 (ENSCAFG00845009152) #34	ENSCAFG00845009108 #35	ENSCAFG00845009072	TBX10 (ENSCAFG00845009035)	ALDH3B2 (ENSCAFG00845008948)	UNC93B1 (ENSCAFG00845008909)
Red fox	MODERN SPECIES	49	PC (ENSVVUG00000010525) #9	C11orf86 (ENSVVUG00000010521) #10	ENSVVUG00000010519	SYT12 (ENSVVUG00000010514) #11	RHOD (ENSVVUG00000010500) #12	KDM2A (ENSVVUG00000010481) #13	GRK2 (ENSVVUG00000010472) #14	ANKRD13D (ENSVVUG00000010464) #15	SSH3 (ENSVVUG00000010455) #16	POLD4 (ENSVVUG00000010444) #17	CLCF1 (ENSVVUG00000010439)	RAD9A (ENSVVUG00000010426) #18	PPP1CA (ENSVVUG00000010423) #19	TBC1D10C (ENSVVUG00000010411) #20	CARNS1 (ENSVVUG00000010408) #21	RPS6KB2 (ENSVVUG00000010392) #22	PTPRCAP (ENSVVUG00000010384) #23	CORO1B (ENSVVUG00000010374) #24	GPR152 (ENSVVUG00000010367) #26	CABP4 (ENSVVUG00000010355) #27	TMEM134 (ENSVVUG00000010350) #28	AIP (ENSVVUG00000010343) #29	PITPNM1 (ENSVVUG00000010318) #30	CDK2AP2 (ENSVVUG00000010306) #31	CABP2 (ENSVVUG00000010286) #32	ENSVVUG00000010271	ENSVVUG00000010240	NDUFV1 (ENSVVUG00000010224) #34	ENSVVUG00000010218 #35	NUDT8 (ENSVVUG00000010211) #37	ENSVVUG00000010192
Felidae	ANCESTRAL SPECIES		ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Panthera	ANCESTRAL SPECIES	18	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a
leopard	MODERN SPECIES	64	ENSPPRG00000000046 #9	LRFN4 (ENSPPRG00000022220) #8	C11orf86 (ENSPPRG00000021097) #10	SYT12 (ENSPPRG00000020909) #11	RHOD (ENSPPRG00000020732) #12	KDM2A (ENSPPRG00000019500) #13	GRK2 (ENSPPRG00000016935) #14	ANKRD13D (ENSPPRG00000014510) #15	SSH3 (ENSPPRG00000013107) #16	POLD4 (ENSPPRG00000012466) #17	CLCF1 (ENSPPRG00000012005)	RAD9A (ENSPPRG00000011858) #18	PPP1CA (ENSPPRG00000011753) #19	TBC1D10C (ENSPPRG00000011477) #20	CARNS1 (ENSPPRG00000011289) #21	RPS6KB2 (ENSPPRG00000011013) #22	PTPRCAP (ENSPPRG00000010851) #23	CORO1B (ENSPPRG00000009537) #24	GPR152 (ENSPPRG00000009357) #26	CABP4 (ENSPPRG00000009084) #27	TMEM134 (ENSPPRG00000008976) #28	AIP (ENSPPRG00000008664) #29	PITPNM1 (ENSPPRG00000008543) #30	CDK2AP2 (ENSPPRG00000007878) #31	CABP2 (ENSPPRG00000007774) #32	ENSPPRG00000007615	ENSPPRG00000006958	NDUFV1 (ENSPPRG00000006947) #34	ENSPPRG00000006725 #35	ENSPPRG00000006340	TBX10 (ENSPPRG00000006221)
lion	MODERN SPECIES	10	LRFN4 (ENSPLOG00000010292) #8	ENSPLOG00000010311	C11orf86 (ENSPLOG00000010341) #10	SYT12 (ENSPLOG00000010366) #11	RHOD (ENSPLOG00000010416) #12	KDM2A (ENSPLOG00000010522) #13	GRK2 (ENSPLOG00000010645) #14	ANKRD13D (ENSPLOG00000010714) #15	SSH3 (ENSPLOG00000010812) #16	POLD4 (ENSPLOG00000010990) #17	CLCF1 (ENSPLOG00000011060)	RAD9A (ENSPLOG00000011138) #18	PPP1CA (ENSPLOG00000011253) #19	TBC1D10C (ENSPLOG00000011370) #20	CARNS1 (ENSPLOG00000011427) #21	RPS6KB2 (ENSPLOG00000011644) #22	PTPRCAP (ENSPLOG00000011683) #23	CORO1B (ENSPLOG00000011738) #24	GPR152 (ENSPLOG00000011768) #26	CABP4 (ENSPLOG00000011804) #27	ENSPLOG00000011943	AIP (ENSPLOG00000012104) #29	PITPNM1 (ENSPLOG00000012168) #30	CDK2AP2 (ENSPLOG00000012271) #31	CABP2 (ENSPLOG00000012338) #32	ENSPLOG00000012523	NDUFV1 (ENSPLOG00000012672) #34	ENSPLOG00000012919 #35	ENSPLOG00000013043	TBX10 (ENSPLOG00000013092)	ALDH3B2 (ENSPLOG00000013293)
Tiger	MODERN SPECIES	492									SSH3 (ENSPTIG00000007418) #16	POLD4 (ENSPTIG00000007757) #17	CLCF1 (ENSPTIG00000008383)	RAD9A (ENSPTIG00000008690) #18	PPP1CA (ENSPTIG00000009825) #19	TBC1D10C (ENSPTIG00000010601) #20	CARNS1 (ENSPTIG00000011037) #21	RPS6KB2 (ENSPTIG00000011233) #22	ENSPTIG00000011991 #24	ENSPTIG00000012585	CABP4 (ENSPTIG00000012944) #27	ENSPTIG00000013619 #28	AIP (ENSPTIG00000014436) #29	PITPNM1 (ENSPTIG00000014649) #30	CDK2AP2 (ENSPTIG00000016923) #31	CABP2 (ENSPTIG00000017163) #32
Cat	MODERN SPECIES	241	PC (ENSFCAG00000007401) #9	LRFN4 (ENSFCAG00000007402) #8	ENSFCAG00000022197	CD1H11orf86 (ENSFCAG00000033720) #10	SYT12 (ENSFCAG00000007404) #11	RHOD (ENSFCAG00000043878) #12	KDM2A (ENSFCAG00000003383) #13	GRK2 (ENSFCAG00000003386) #14	ANKRD13D (ENSFCAG00000003388) #15	SSH3 (ENSFCAG00000003389) #16	POLD4 (ENSFCAG00000026317) #17	CLCF1 (ENSFCAG00000030466)	RAD9A (ENSFCAG00000003391) #18	PPP1CA (ENSFCAG00000028502) #19	CARNS1 (ENSFCAG00000003394) #21	RPS6KB2 (ENSFCAG00000003395) #22	PTPRCAP (ENSFCAG00000045093) #23	CORO1B (ENSFCAG00000003396) #24	TMEM134 (ENSFCAG00000031246) #26	AIP (ENSFCAG00000001749) #29	CABP4 (ENSFCAG00000003398) #27	ENSFCAG00000052433	PITPNM1 (ENSFCAG00000001751) #30	CDK2AP2 (ENSFCAG00000042271) #31	CABP2 (ENSFCAG00000001754) #32	GSTP1 (ENSFCAG00000001755)	NDUFV1 (ENSFCAG00000001757) #34	ENSFCAG00000022755 #35	TBX10 (ENSFCAG00000001760)	ENSFCAG00000044091	UNC93B1 (ENSFCAG00000002986)
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Equus	ANCESTRAL SPECIES	11	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT01090000263356	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000163435.f	ENSGT01100000264273	ENSGT00940000163435.e.b	ENSGT00390000010641 #34	ENSGT00940000162875 #35
Horse	MODERN SPECIES	3	PC (ENSECAG00000024887) #9	C12H11orf86 (ENSECAG00000025011) #10	SYT12 (ENSECAG00000025014) #11	RHOD (ENSECAG00000055527) #12	ENSECAG00000037664	KDM2A (ENSECAG00000025072) #13	GRK2 (ENSECAG00000002944) #14	ANKRD13D (ENSECAG00000058854) #15	SSH3 (ENSECAG00000009653) #16	ENSECAG00000010008 #17	CLCF1 (ENSECAG00000010091)	RAD9A (ENSECAG00000010129) #18	TBC1D10C (ENSECAG00000012029) #20	PPP1CA (ENSECAG00000010532) #19	CARNS1 (ENSECAG00000012116) #21	RPS6KB2 (ENSECAG00000012221) #22	PTPRCAP (ENSECAG00000014875) #23	CORO1B (ENSECAG00000014882) #24	GPR152 (ENSECAG00000016385) #26	CABP4 (ENSECAG00000016408) #27	TMEM134 (ENSECAG00000016857) #28	AIP (ENSECAG00000017167) #29	PITPNM1 (ENSECAG00000017776) #30	CDK2AP2 (ENSECAG00000020079) #31	CABP2 (ENSECAG00000020097) #32	ENSECAG00000020462	NDUFV1 (ENSECAG00000021477) #34	ENSECAG00000054975	DOC2G (ENSECAG00000022087) #35	TBX10 (ENSECAG00000022406)	ALDH3B2 (ENSECAG00000000896)
Donkey	MODERN SPECIES	21	PC (ENSEASG00005005157) #9	ENSEASG00005036361 #10	SYT12 (ENSEASG00005005838) #11	RHOD (ENSEASG00005036709) #12	ENSEASG00005024407	KDM2A (ENSEASG00005005843) #13	GRK2 (ENSEASG00005005846) #14	ANKRD13D (ENSEASG00005005850) #15	SSH3 (ENSEASG00005005855) #16	ENSEASG00005028320 #17	CLCF1 (ENSEASG00005030157)	ENSEASG00005005863 #18	PPP1CA (ENSEASG00005005876) #19	TBC1D10C (ENSEASG00005005914) #20	CARNS1 (ENSEASG00005005916) #21	RPS6KB2 (ENSEASG00005005920) #22	PTPRCAP (ENSEASG00005005924) #23	CORO1B (ENSEASG00005005926) #24	GPR152 (ENSEASG00005005928) #26	CABP4 (ENSEASG00005005930) #27	TMEM134 (ENSEASG00005035157) #28	AIP (ENSEASG00005005936) #29	PITPNM1 (ENSEASG00005005939) #30	CDK2AP2 (ENSEASG00005005947) #31	CABP2 (ENSEASG00005005950) #32	ENSEASG00005005953	ENSEASG00005005960	ENSEASG00005026638	NDUFV1 (ENSEASG00005005962) #34	ENSEASG00005005966 #35	ENSEASG00005005969
Chiroptera	ANCESTRAL SPECIES	14	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Megabat	MODERN SPECIES	2353						KDM2A (ENSPVAG00000008538) #13	GRK2 (ENSPVAG00000008543) #14	ANKRD13D (ENSPVAG00000008545) #15	SSH3 (ENSPVAG00000008548) #16	POLD4 (ENSPVAG00000008550) #17	CLCF1 (ENSPVAG00000008552)	RAD9A (ENSPVAG00000008553) #18	PPP1CA (ENSPVAG00000008557) #19	TBC1D10C (ENSPVAG00000008561) #20	ENSPVAG00000008564 #21	RPS6KB2 (ENSPVAG00000008565) #22	CORO1B (ENSPVAG00000008571) #24	CABP4 (ENSPVAG00000008576) #27	TMEM134 (ENSPVAG00000008578) #28	AIP (ENSPVAG00000008580) #29	PITPNM1 (ENSPVAG00000008581) #30	CDK2AP2 (ENSPVAG00000008582) #31	CABP2 (ENSPVAG00000008584) #32	ENSPVAG00000008586	NDUFV1 (ENSPVAG00000008590) #34	ENSPVAG00000008591	ENSPVAG00000008592	ACY3 (ENSPVAG00000008593)
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Microbat	DUPLICATION
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2707																ENSMLUG00000026476 #22
Microbat	MODERN SPECIES	963	PURG (ENSMLUG00000024424)	ENSMLUG00000024122	ENSMLUG00000016793	ENSMLUG00000008035	TEX15 (ENSMLUG00000014276)	PPP2CB (ENSMLUG00000012897)	UBXN8 (ENSMLUG00000016846)	GSR (ENSMLUG00000010568)	ENSMLUG00000023946	GTF2E2 (ENSMLUG00000007814)	RBPMS (ENSMLUG00000009391)	DCTN6 (ENSMLUG00000028330)	MBOAT4 (ENSMLUG00000015635)	LEPROTL1 (ENSMLUG00000026782)	SARAF (ENSMLUG00000012942)	ENSMLUG00000022302 #22	DUSP4 (ENSMLUG00000007291)	TNKS (ENSMLUG00000007233)	PPP1R3B (ENSMLUG00000016137)	ERI1 (ENSMLUG00000006288)	ENSMLUG00000025949	PRAG1 (ENSMLUG00000000303)	LONRF1 (ENSMLUG00000000300)	ENSMLUG00000024640	ENSMLUG00000013032	DLC1 (ENSMLUG00000013036)	ENSMLUG00000027134	ENSMLUG00000023833	C8orf48 (ENSMLUG00000013054)
Microbat	MODERN SPECIES	1351				SYT12 (ENSMLUG00000011608) #11	RHOD (ENSMLUG00000011602) #12	KDM2A (ENSMLUG00000005065) #13	GRK2 (ENSMLUG00000005075) #14	ANKRD13D (ENSMLUG00000005085) #15	SSH3 (ENSMLUG00000012082) #16	POLD4 (ENSMLUG00000005095) #17	CLCF1 (ENSMLUG00000008928)	RAD9A (ENSMLUG00000005102) #18	PPP1CA (ENSMLUG00000005112) #19	TBC1D10C (ENSMLUG00000005115) #20	ENSMLUG00000005122	ENSMLUG00000005128 #22	PTPRCAP (ENSMLUG00000029066) #23	CORO1B (ENSMLUG00000025612) #24	GPR152 (ENSMLUG00000022557) #26	CABP4 (ENSMLUG00000005139) #27	TMEM134 (ENSMLUG00000005143) #28	AIP (ENSMLUG00000011271) #29	PITPNM1 (ENSMLUG00000011222) #30	CDK2AP2 (ENSMLUG00000011488) #31	CABP2 (ENSMLUG00000011504) #32	GSTP1 (ENSMLUG00000011529) #33	NDUFV1 (ENSMLUG00000011539) #34	ENSMLUG00000026150 #35	TBX10 (ENSMLUG00000011576)	ENSMLUG00000011588	ALDH3B2 (ENSMLUG00000028367)
Greater horseshoe bat	MODERN SPECIES	2	LRFN4 (ENSRFEG00010001285) #8	PC (ENSRFEG00010001232) #9	C11orf86 (ENSRFEG00010001191) #10	SYT12 (ENSRFEG00010001151) #11	RHOD (ENSRFEG00010001120) #12	KDM2A (ENSRFEG00010001017) #13	GRK2 (ENSRFEG00010000957) #14	ANKRD13D (ENSRFEG00010000903) #15	SSH3 (ENSRFEG00010000770) #16	POLD4 (ENSRFEG00010000741) #17	CLCF1 (ENSRFEG00010000699)	RAD9A (ENSRFEG00010000657) #18	PPP1CA (ENSRFEG00010000614) #19	TBC1D10C (ENSRFEG00010000562) #20	CARNS1 (ENSRFEG00010021672) #21	RPS6KB2 (ENSRFEG00010021650) #22	PTPRCAP (ENSRFEG00010021642) #23	CORO1B (ENSRFEG00010021624) #24	GPR152 (ENSRFEG00010021609) #26	CABP4 (ENSRFEG00010021584) #27	TMEM134 (ENSRFEG00010021554) #28	AIP (ENSRFEG00010021536) #29	PITPNM1 (ENSRFEG00010021507) #30	CDK2AP2 (ENSRFEG00010021494) #31	CABP2 (ENSRFEG00010021473) #32	ENSRFEG00010021451	ENSRFEG00010021433 #33	NDUFV1 (ENSRFEG00010021407) #34	ENSRFEG00010021394 #35	ENSRFEG00010021387	TBX10 (ENSRFEG00010021376)
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00530000063359.B
Tenrec	MODERN SPECIES	6863																RPS6KB2 (ENSETEG00000011175) #22
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000163889 #37	ENSGT00940000154816.a.a	ENSGT00530000063359.B
Hyrax	MODERN SPECIES	5783											POLD4 (ENSPCAG00000008381) #17	CLCF1 (ENSPCAG00000008411)	RAD9A (ENSPCAG00000008438) #18	PPP1CA (ENSPCAG00000008488) #19	TBC1D10C (ENSPCAG00000008533) #20	RPS6KB2 (ENSPCAG00000008582) #22	PTPRCAP (ENSPCAG00000008661) #23	CORO1B (ENSPCAG00000008674) #24	GPR152 (ENSPCAG00000008723) #26	CABP4 (ENSPCAG00000008736) #27	ENSPCAG00000008770 #28	AIP (ENSPCAG00000008812) #29	PITPNM1 (ENSPCAG00000008848) #30	CDK2AP2 (ENSPCAG00000008952) #31	CABP2 (ENSPCAG00000008970) #32
Elephant	MODERN SPECIES	532	LRFN4 (ENSLAFG00000026880) #8	PC (ENSLAFG00000000987) #9	C11orf86 (ENSLAFG00000000993) #10	SYT12 (ENSLAFG00000013255) #11	RHOD (ENSLAFG00000013260) #12	KDM2A (ENSLAFG00000006277) #13	GRK2 (ENSLAFG00000015685) #14	ANKRD13D (ENSLAFG00000002412) #15	SSH3 (ENSLAFG00000002413) #16	POLD4 (ENSLAFG00000025827) #17	CLCF1 (ENSLAFG00000010943)	RAD9A (ENSLAFG00000008918) #18	PPP1CA (ENSLAFG00000022802) #19	TBC1D10C (ENSLAFG00000029168) #20	ENSLAFG00000030838 #21	RPS6KB2 (ENSLAFG00000008925) #22	PTPRCAP (ENSLAFG00000022927) #23	CORO1B (ENSLAFG00000008929) #24	ENSLAFG00000028907	ENSLAFG00000003585 #27	ENSLAFG00000032093	AIP (ENSLAFG00000005289) #29	PITPNM1 (ENSLAFG00000022098) #30	CDK2AP2 (ENSLAFG00000010947) #31	CABP2 (ENSLAFG00000000855) #32	GSTP1 (ENSLAFG00000022378) #33	NDUFV1 (ENSLAFG00000022729) #34	ENSLAFG00000030851 #35	NUDT8 (ENSLAFG00000015108) #37	TBX10 (ENSLAFG00000022296)	ENSLAFG00000031633
Xenarthra	ANCESTRAL SPECIES	35		ENSGT00390000004124 #7	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000164125	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000154816.a.a	ENSGT00390000001189.b	ENSGT00940000155904.e.b
Armadillo	MODERN SPECIES	4298	PC (ENSDNOG00000004286) #9	LRFN4 (ENSDNOG00000004298) #8	C11orf86 (ENSDNOG00000037644) #10	SYT12 (ENSDNOG00000005949) #11	RHOD (ENSDNOG00000043702) #12	ENSDNOG00000044420	KDM2A (ENSDNOG00000002051) #13	ANKRD13D (ENSDNOG00000002857) #15	SSH3 (ENSDNOG00000039703) #16	ENSDNOG00000032805	POLD4 (ENSDNOG00000035470) #17	CLCF1 (ENSDNOG00000044435)	RAD9A (ENSDNOG00000039829) #18	PPP1CA (ENSDNOG00000042750) #19	TBC1D10C (ENSDNOG00000037883) #20	RPS6KB2 (ENSDNOG00000041769) #22	PTPRCAP (ENSDNOG00000034706) #23	CORO1B (ENSDNOG00000002044) #24	GPR152 (ENSDNOG00000033395) #26	CABP4 (ENSDNOG00000046240) #27	AIP (ENSDNOG00000042576) #29	ENSDNOG00000043892 #30	CDK2AP2 (ENSDNOG00000033375) #31	CABP2 (ENSDNOG00000046652) #32	ENSDNOG00000046765	GSTP1 (ENSDNOG00000035023) #33	NDUFV1 (ENSDNOG00000007356) #34	ENSDNOG00000034928 #35	TBX10 (ENSDNOG00000025226)	ACY3 (ENSDNOG00000040590)	ALDH3B2 (ENSDNOG00000005545)
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484.c #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00940000163374
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484.c #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460 #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00900000141164 #9	ENSGT00940000162195 #8	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484.c #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460.p #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Diprotodontia_a	DUPLICATION
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000162195 #8	ENSGT00900000141164 #9	ENSGT00390000012120 #10	ENSGT00940000158627 #11	ENSGT00940000161731 #12	ENSGT00940000155484.c #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00390000018717.a #21	ENSGT00940000155062.a.g #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000011766 #28	ENSGT00390000001289.a #29	ENSGT00940000161522 #30	ENSGT00940000160334 #31	ENSGT00940000159796 #32	ENSGT00940000162460.p #33	ENSGT00390000010641 #34	ENSGT00940000162875 #35	ENSGT00940000162775	ENSGT00940000154816.a.a	ENSGT00390000001189.b
Common wonbat	MODERN SPECIES	714	LRFN4 (ENSVURG00010000273) #8	PC (ENSVURG00010000248) #9	ENSVURG00010000226 #10	SYT12 (ENSVURG00010000192) #11	RHOD (ENSVURG00010000181) #12	ENSVURG00010000125 #13	GRK2 (ENSVURG00010024770) #14	ANKRD13D (ENSVURG00010024763) #15	SSH3 (ENSVURG00010024758) #16	POLD4 (ENSVURG00010024756) #17	CLCF1 (ENSVURG00010024754)	RAD9A (ENSVURG00010024753) #18	PPP1CA (ENSVURG00010024750) #19	TBC1D10C (ENSVURG00010024747) #20	CARNS1 (ENSVURG00010024729) #21	ENSVURG00010024722 #22	ENSVURG00010024721 #23	CORO1B (ENSVURG00010024714) #24	CABP4 (ENSVURG00010024706) #27	TMEM134 (ENSVURG00010024702) #28	PITPNM1 (ENSVURG00010024698) #30	CDK2AP2 (ENSVURG00010024697) #31	CABP2 (ENSVURG00010024694) #32	ENSVURG00010024689 #33	ENSVURG00010024685 #33	NDUFV1 (ENSVURG00010024680) #34	ENSVURG00010024674 #35	ENSVURG00010024670	TBX10 (ENSVURG00010024668)	ENSVURG00010024665	ENSVURG00010024664
koala	MODERN SPECIES	179	LRFN4 (ENSPCIG00000026293) #8	ENSPCIG00000026294 #10	SYT12 (ENSPCIG00000036826) #11	RHOD (ENSPCIG00000026303) #12	ENSPCIG00000026309 #13	GRK2 (ENSPCIG00000027498) #14	ANKRD13D (ENSPCIG00000027499) #15	SSH3 (ENSPCIG00000027500) #16	ENSPCIG00000034257 #17	CLCF1 (ENSPCIG00000026625)	RAD9A (ENSPCIG00000026626) #18	PPP1CA (ENSPCIG00000026630) #19	ENSPCIG00000035876 #20	ENSPCIG00000032873	ENSPCIG00000037041 #21	RPS6KB2 (ENSPCIG00000034205) #22	CORO1B (ENSPCIG00000003938) #24	GPR152 (ENSPCIG00000003959) #26	ENSPCIG00000033689 #27	ENSPCIG00000003975 #28	ENSPCIG00000022014 #29	PITPNM1 (ENSPCIG00000022016) #30	CABP2 (ENSPCIG00000022020) #32	GSTP1 (ENSPCIG00000022022) #33	NDUFV1 (ENSPCIG00000022025) #34	ENSPCIG00000022032 #35	ENSPCIG00000033935	TBX10 (ENSPCIG00000009222)	ENSPCIG00000009223	ENSPCIG00000009224	UNC93B1 (ENSPCIG00000036094)
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000155062.a.h #22
Common wonbat	MODERN SPECIES	1019	RHOG (ENSVURG00010022226)	STIM1 (ENSVURG00010022220)	RRM1 (ENSVURG00010022211)	ENSVURG00010022208	ENSVURG00010022203	ENSVURG00010022200	ENSVURG00010022196	ENSVURG00010022195	ENSVURG00010022191	OR52M1 (ENSVURG00010022188)	ENSVURG00010022182	ENSVURG00010022181	ENSVURG00010022176	ENSVURG00010022171	ENSVURG00010022170	ENSVURG00010022168 #22	ENSVURG00010022167	ENSVURG00010022166	ENSVURG00010022164	ENSVURG00010022161	ENSVURG00010022159	ENSVURG00010022158	ENSVURG00010022156	ENSVURG00010022151	ENSVURG00010022139	ENSVURG00010022135	ENSVURG00010022113	OR51D1 (ENSVURG00010022108)	OR51E1 (ENSVURG00010022106)	ENSVURG00010022103	ENSVURG00010022100
Wallaby	MODERN SPECIES	8404																RPS6KB2 (ENSMEUG00000000294) #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000027356	ENSSHAG00000026263 #8	PC (ENSSHAG00000006586) #9	ENSSHAG00000022722 #10	SYT12 (ENSSHAG00000005135) #11	RHOD (ENSSHAG00000004771) #12	ENSSHAG00000000130 #13	GRK2 (ENSSHAG00000020611) #14	ANKRD13D (ENSSHAG00000025475) #15	ENSSHAG00000026149 #16	CLCF1 (ENSSHAG00000004986)	RAD9A (ENSSHAG00000028578) #18	PPP1CA (ENSSHAG00000030720) #19	TBC1D10C (ENSSHAG00000000027) #20	ENSSHAG00000023289	RPS6KB2 (ENSSHAG00000002574) #22	ENSSHAG00000002870 #23	GPR152 (ENSSHAG00000025856) #26	AIP (ENSSHAG00000001064) #29	ENSSHAG00000029978 #30	CABP2 (ENSSHAG00000001734) #32	ENSSHAG00000005628 #34	ENSSHAG00000005499 #35	ENSSHAG00000005329	TBX10 (ENSSHAG00000005122)	ENSSHAG00000004624	ENSSHAG00000024605	ENSSHAG00000002419	ENSSHAG00000021272	NDUFS8 (ENSSHAG00000008291)	TCIRG1 (ENSSHAG00000008168)
Opossum	MODERN SPECIES	7	ENSMODG00000008033	ENSMODG00000041541	RCE1 (ENSMODG00000007858) #7	LRFN4 (ENSMODG00000007842) #8	PC (ENSMODG00000007831) #9	ENSMODG00000043771 #10	SYT12 (ENSMODG00000007791) #11	ENSMODG00000007777 #12	ENSMODG00000007767 #13	ENSMODG00000007721 #15	ENSMODG00000007683 #17	RAD9A (ENSMODG00000007675) #18	ENSMODG00000037586	ENSMODG00000007632 #20	CARNS1 (ENSMODG00000007620) #21	RPS6KB2 (ENSMODG00000007615) #22	ENSMODG00000043713 #23	ENSMODG00000007587 #24	GPR152 (ENSMODG00000007491) #26	CABP4 (ENSMODG00000007485) #27	TMEM134 (ENSMODG00000024112) #28	ENSMODG00000007471 #29	TRMU (ENSMODG00000007433)	ENSMODG00000007410	TTC38 (ENSMODG00000007396)	CDPF1 (ENSMODG00000024113)	PPARA (ENSMODG00000007365)	ENSMODG00000024114	ENSMODG00000007333	WNT7B (ENSMODG00000007327)	ENSMODG00000007304
Platypus	MODERN SPECIES	14	ENSOANG00000037515 ##26	ENSOANG00000005851 ##26	ENSOANG00000043368 ##26	ENSOANG00000043730 ##26	ENSOANG00000015174 ##26	ENSOANG00000040700 #12	KDM2A (ENSOANG00000005993) #13	GRK2 (ENSOANG00000037510) #14	ANKRD13D (ENSOANG00000044186) #15	SSH3 (ENSOANG00000039995) #16	ENSOANG00000038827 #17	ENSOANG00000046031	RAD9A (ENSOANG00000011414) #18	PPP1CA (ENSOANG00000011413) #19	CARNS1 (ENSOANG00000005965) #21	RPS6KB2 (ENSOANG00000036266) #22	ENSOANG00000050645 #23	CORO1B (ENSOANG00000047940) #24	ENSOANG00000050272	ENSOANG00000050449 #27	ENSOANG00000042594 #28	AIP (ENSOANG00000037575) #29	PITPNM1 (ENSOANG00000040791) #30	CDK2AP2 (ENSOANG00000046933) #31	GSTP1 (ENSOANG00000037742) #33	NDUFV1 (ENSOANG00000042354) #34	ENSOANG00000046295 #37	ENSOANG00000038879	ACY3 (ENSOANG00000029117)	ENSOANG00000047139	UNC93B1 (ENSOANG00000036137)
Sauria	ANCESTRAL SPECIES	73	ENSGT01030000234639.A.b.c ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27
Lepidosauria	ANCESTRAL SPECIES	64	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Episquamata	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.c.h ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Laterata	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.c.h ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00960000189182	ENSGT00990000203796.b	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Common wall lizard	MODERN SPECIES		POLD4 (ENSPMRG00000011137) #17	ENSPMRG00000011145	ENSPMRG00000011149	ENSPMRG00000011157	ENSPMRG00000011161	ENSPMRG00000011169	ENSPMRG00000011181	ENSPMRG00000011205	ENSPMRG00000011214	CLCF1 (ENSPMRG00000011218)	RAD9A (ENSPMRG00000011225) #18	PPP1CA (ENSPMRG00000011241) #19	TBC1D10C (ENSPMRG00000011247) #20	ENSPMRG00000011251	ENSPMRG00000011257	RPS6KB2 (ENSPMRG00000011262) #22	PTPRCAP (ENSPMRG00000011270) #23	CORO1B (ENSPMRG00000011275) #24	CABP4 (ENSPMRG00000011281) #27	ACY3 (ENSPMRG00000011291)	ENSPMRG00000011306	TCIRG1 (ENSPMRG00000011344)	ENSPMRG00000011532	ALDH3B2 (ENSPMRG00000011539)	UNC93B1 (ENSPMRG00000011570)	MAX (ENSPMRG00000011595)	FNTB (ENSPMRG00000011607)	RAB15 (ENSPMRG00000011743)	GPX2 (ENSPMRG00000011751)	SPTB (ENSPMRG00000011932)	PLEKHG3 (ENSPMRG00000013193)
Argentine black and white tegu	MODERN SPECIES	27	GRK2 (ENSSMRG00000009956) #14	ANKRD13D (ENSSMRG00000009957) #15	SSH3 (ENSSMRG00000009958) #16	ENSSMRG00000009959	POLD4 (ENSSMRG00000009960) #17	ENSSMRG00000009962	ENSSMRG00000009964	ENSSMRG00000009965	ENSSMRG00000009966	ENSSMRG00000009967	CLCF1 (ENSSMRG00000009968)	RAD9A (ENSSMRG00000009969) #18	PPP1CA (ENSSMRG00000009971) #19	TBC1D10C (ENSSMRG00000009973) #20	ENSSMRG00000010343	RPS6KB2 (ENSSMRG00000010348) #22	CORO1B (ENSSMRG00000010355) #24	CABP4 (ENSSMRG00000010360) #27	ACY3 (ENSSMRG00000010363)	ENSSMRG00000010420	TCIRG1 (ENSSMRG00000010426)	NDUFS8 (ENSSMRG00000010429)	ENSSMRG00000010431	ENSSMRG00000010488	ENSSMRG00000010520	UNC93B1 (ENSSMRG00000010568)	MAX (ENSSMRG00000010573)	FNTB (ENSSMRG00000010574)	RAB15 (ENSSMRG00000010576)	GPX2 (ENSSMRG00000010577)	CHURC1 (ENSSMRG00000010578)
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01030000234639.A.b.c.h ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00390000018717.a #21	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00390000003049	ENSGT00940000155904	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163	ENSGT00940000158908
Elapidae	ANCESTRAL SPECIES		ENSGT01100000263496.C.b.b	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b.h.a.b	ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Indian cobra	MODERN SPECIES		ENSNNAG00000015230	ENSNNAG00000015204	ENSNNAG00000015180	ENSNNAG00000015140	POLD4 (ENSNNAG00000015065) #17	ENSNNAG00000015037	ENSNNAG00000015025	ENSNNAG00000015013	ENSNNAG00000014982	ENSNNAG00000014959	CLCF1 (ENSNNAG00000014943)	RAD9A (ENSNNAG00000014879) #18	PPP1CA (ENSNNAG00000014855) #19	TBC1D10C (ENSNNAG00000014817) #20	ENSNNAG00000014795	RPS6KB2 (ENSNNAG00000014748) #22	PTPRCAP (ENSNNAG00000014726) #23	CORO1B (ENSNNAG00000014707) #24	CABP4 (ENSNNAG00000014685) #27	ACY3 (ENSNNAG00000014664)	TBX10 (ENSNNAG00000014624)	TCIRG1 (ENSNNAG00000014584)	ENSNNAG00000014335	NDUFS8 (ENSNNAG00000014296)	ENSNNAG00000013740	UNC93B1 (ENSNNAG00000013677)	MAX (ENSNNAG00000013615)	FNTB (ENSNNAG00000013581)	RAB15 (ENSNNAG00000013561)	GPX2 (ENSNNAG00000013545)	CHURC1 (ENSNNAG00000013529)
Elapidae_a	ANCESTRAL SPECIES	5										ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Acanthophiinae	ANCESTRAL SPECIES	7										ENSGT00950000183133.f.g.a.b.g	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796.a	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000163374	ENSGT00950000182881.a.b.a.b	ENSGT00940000155904.l	ENSGT00390000003049	ENSGT00940000155904.k	ENSGT00530000063359.B	ENSGT00530000064011	ENSGT00950000183128.C	ENSGT00940000157848	ENSGT00940000160477	ENSGT00390000011163
Eastern brown snake	MODERN SPECIES	37									ENSPTXG00000010701	CLCF1 (ENSPTXG00000010699)	RAD9A (ENSPTXG00000010697) #18	PPP1CA (ENSPTXG00000010695) #19	TBC1D10C (ENSPTXG00000010679) #20	ENSPTXG00000010674	PTPRCAP (ENSPTXG00000010673) #23	RPS6KB2 (ENSPTXG00000010671) #22	CORO1B (ENSPTXG00000010669) #24	CABP4 (ENSPTXG00000010667) #27	ACY3 (ENSPTXG00000010665)	ENSPTXG00000010662	TCIRG1 (ENSPTXG00000010657)	ENSPTXG00000010652	NDUFS8 (ENSPTXG00000010649)	ENSPTXG00000010498	UNC93B1 (ENSPTXG00000010482)	MAX (ENSPTXG00000010479)	FNTB (ENSPTXG00000010478)	RAB15 (ENSPTXG00000010477)	GPX2 (ENSPTXG00000010476)	CHURC1 (ENSPTXG00000010475)	SPTB (ENSPTXG00000010474)
Mainland tiger snake	MODERN SPECIES	12									ENSNSUG00000012656	ENSNSUG00000012655	CLCF1 (ENSNSUG00000012654)	RAD9A (ENSNSUG00000012653) #18	PPP1CA (ENSNSUG00000012652) #19	TBC1D10C (ENSNSUG00000012651) #20	ENSNSUG00000012649	RPS6KB2 (ENSNSUG00000012636) #22	PTPRCAP (ENSNSUG00000012635) #23	CORO1B (ENSNSUG00000012634) #24	CABP4 (ENSNSUG00000012633) #27	ACY3 (ENSNSUG00000012632)	TCIRG1 (ENSNSUG00000012612)	ENSNSUG00000012609	NDUFS8 (ENSNSUG00000012604)	ENSNSUG00000012603	ENSNSUG00000012602	UNC93B1 (ENSNSUG00000012601)	MAX (ENSNSUG00000012600)	FNTB (ENSNSUG00000012585)	RAB15 (ENSNSUG00000012583)	GPX2 (ENSNSUG00000012581)	CHURC1 (ENSNSUG00000012580)
Blue-lipped sea krait	MODERN SPECIES	5731																RPS6KB2 (ENSLLTG00000014903) #22
Lizard	MODERN SPECIES		SSH3 (ENSACAG00000007983) #16	ENSACAG00000023851	POLD4 (ENSACAG00000034932) #17	ENSACAG00000008036	ENSACAG00000008021	ENSACAG00000026621	ENSACAG00000008041	ENSACAG00000044604	ENSACAG00000024500	CLCF1 (ENSACAG00000040580)	RAD9A (ENSACAG00000008066) #18	PPP1CA (ENSACAG00000008113) #19	TBC1D10C (ENSACAG00000008155) #20	ENSACAG00000036778	CARNS1 (ENSACAG00000044067) #21	RPS6KB2 (ENSACAG00000008242) #22	CORO1B (ENSACAG00000008365) #24	ENSACAG00000035731	CABP4 (ENSACAG00000008481) #27	ENSACAG00000008489	ENSACAG00000008549	ENSACAG00000008604	ENSACAG00000008728	ENSACAG00000015237	ENSACAG00000008836	MAX (ENSACAG00000043849)	FNTB (ENSACAG00000008948)	RAB15 (ENSACAG00000009008)	GPX2 (ENSACAG00000041232)	CHURC1 (ENSACAG00000009057)	SPTB (ENSACAG00000009068)
tuatara	MODERN SPECIES	786				ENSSPUG00000009704	KDM2A (ENSSPUG00000009673) #13	GRK2 (ENSSPUG00000009626) #14	ANKRD13D (ENSSPUG00000009595) #15	SSH3 (ENSSPUG00000009526) #16	ENSSPUG00000009478	POLD4 (ENSSPUG00000009459) #17	CLCF1 (ENSSPUG00000009438)	RAD9A (ENSSPUG00000009423) #18	PPP1CA (ENSSPUG00000009371) #19	TBC1D10C (ENSSPUG00000009318) #20	ENSSPUG00000009270	RPS6KB2 (ENSSPUG00000009249) #22	PTPRCAP (ENSSPUG00000009240) #23	CORO1B (ENSSPUG00000009205) #24	CABP4 (ENSSPUG00000009187) #27	ENSSPUG00000009158	TCIRG1 (ENSSPUG00000009129)	NDUFS8 (ENSSPUG00000009108)	ALDH3B2 (ENSSPUG00000009070)	UNC93B1 (ENSSPUG00000009049)	MAX (ENSSPUG00000009027)
Archelosauria	ANCESTRAL SPECIES	2	ENSGT01030000234639.A.b.c ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b	ENSGT00940000162443
Cryptodira	ANCESTRAL SPECIES	47	ENSGT01030000234639.A.b.c.b ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162329.c	ENSGT00390000017281
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT01030000234639.A.b.c.b ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT01030000234639.A.b.c.a.a.b ##26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.a.b.d.b	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b
Emydidae	ANCESTRAL SPECIES	54		ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b.db #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT01030000234639.A.b.c.a.a.b ##26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.d.a	ENSGT00940000175288	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00530000063370.a.b	ENSGT01030000234567.B.b.z	ENSGT00940000162443
Three-toed box turtle	MODERN SPECIES	34		RHOD (ENSTMTG00000018341) #12	KDM2A (ENSTMTG00000018306) #13	GRK2 (ENSTMTG00000017447) #14	ANKRD13D (ENSTMTG00000017354) #15	SSH3 (ENSTMTG00000017324) #16	ENSTMTG00000017301	POLD4 (ENSTMTG00000017284) #17	ENSTMTG00000017258	ENSTMTG00000017240	CLCF1 (ENSTMTG00000017231)	RAD9A (ENSTMTG00000017216) #18	ENSTMTG00000017199 #19	TBC1D10C (ENSTMTG00000017126) #20	ENSTMTG00000017104	RPS6KB2 (ENSTMTG00000017085) #22	PTPRCAP (ENSTMTG00000017074) #23	CORO1B (ENSTMTG00000017036) #24	CABP4 (ENSTMTG00000017012) #27	ENSTMTG00000016999	ENSTMTG00000016974	ACY3 (ENSTMTG00000016860)	OSBP (ENSTMTG00000016825)	PATL1 (ENSTMTG00000016462)	ENSTMTG00000016417	ENSTMTG00000016385	STX3 (ENSTMTG00000016340)	MRPL16 (ENSTMTG00000016326)	CBLIF (ENSTMTG00000016241)	TCN1 (ENSTMTG00000016191)	ENSTMTG00000016174
painted turtle	MODERN SPECIES	13	RHOD (ENSCPBG00000000110) #12	KDM2A (ENSCPBG00000000117) #13	GRK2 (ENSCPBG00000000461) #14	ANKRD13D (ENSCPBG00000009323) #15	SSH3 (ENSCPBG00000009325) #16	ENSCPBG00000009327	POLD4 (ENSCPBG00000009329) #17	ENSCPBG00000009332	ENSCPBG00000009334	ENSCPBG00000009337	CLCF1 (ENSCPBG00000009339)	RAD9A (ENSCPBG00000009342) #18	PPP1CA (ENSCPBG00000009344) #19	TBC1D10C (ENSCPBG00000009346) #20	ENSCPBG00000009349	RPS6KB2 (ENSCPBG00000009351) #22	PTPRCAP (ENSCPBG00000009352) #23	CORO1B (ENSCPBG00000009361) #24	ENSCPBG00000009482 #26	CABP4 (ENSCPBG00000009488) #27	ENSCPBG00000009492 #26	ACY3 (ENSCPBG00000009496)	ENSCPBG00000009500 ##26	OSBP (ENSCPBG00000009513)	STX3 (ENSCPBG00000009554)	ENSCPBG00000009572	MRPL16 (ENSCPBG00000009578)	CBLIF (ENSCPBG00000009582)	TCN1 (ENSCPBG00000009594)	MS4A12 (ENSCPBG00000009604)	R3HDM1 (ENSCPBG00000009645)
Testudinidae	ANCESTRAL SPECIES	61	ENSGT01030000234639.A.b.c.b ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00940000158691.j	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a.d.b	ENSGT00950000183133.f.g.a.a.d.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001189.b.e	ENSGT01030000234639.A.b.c.a.a.b ##26	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01060000248581.A.a.a.b.c	ENSGT01100000263561.B	ENSGT01060000248581.A.a.b	ENSGT01090000260024.A.a.b.a.a	ENSGT01060000248581.A.a.a.b.d.b	ENSGT00940000175288	ENSGT01030000234627.a.b.a.a
Abingdon island giant tortoise	MODERN SPECIES	1848	KDM2A (ENSCABG00000010947) #13	GRK2 (ENSCABG00000010953) #14	ANKRD13D (ENSCABG00000010975) #15	SSH3 (ENSCABG00000011160) #16	ENSCABG00000011164	POLD4 (ENSCABG00000011165) #17	ENSCABG00000011167	ENSCABG00000011170	ENSCABG00000011175	ENSCABG00000011189	CLCF1 (ENSCABG00000011191)	RAD9A (ENSCABG00000011193) #18	PPP1CA (ENSCABG00000011195) #19	TBC1D10C (ENSCABG00000011199) #20	ENSCABG00000011268	RPS6KB2 (ENSCABG00000011289) #22	PTPRCAP (ENSCABG00000011968) #23	ENSCABG00000011969 #24	ENSCABG00000011972 #24	GPR152 (ENSCABG00000011974) #26	CABP4 (ENSCABG00000011975) #27	ENSCABG00000011976	ENSCABG00000011977
Goode s thornscrub tortoise	MODERN SPECIES	18	RHOD (ENSGEVG00005006104) #12	KDM2A (ENSGEVG00005006077) #13	GRK2 (ENSGEVG00005006032) #14	ANKRD13D (ENSGEVG00005015152) #15	SSH3 (ENSGEVG00005015110) #16	ENSGEVG00005015016	POLD4 (ENSGEVG00005014964) #17	ENSGEVG00005014913	ENSGEVG00005014725	ENSGEVG00005014579	CLCF1 (ENSGEVG00005014539)	RAD9A (ENSGEVG00005014502) #18	PPP1CA (ENSGEVG00005014476) #19	TBC1D10C (ENSGEVG00005014444) #20	ENSGEVG00005014416	RPS6KB2 (ENSGEVG00005014347) #22	PTPRCAP (ENSGEVG00005014328) #23	CORO1B (ENSGEVG00005014295) #24	ENSGEVG00005014267 #26	ENSGEVG00005014232 #27	ENSGEVG00005014139 #26	ENSGEVG00005014083 #27	ENSGEVG00005013876	ENSGEVG00005013792 #26	ENSGEVG00005013750 ##26	OSBP (ENSGEVG00005012761)	PATL1 (ENSGEVG00005012582)	ENSGEVG00005012509	ENSGEVG00005012481	ENSGEVG00005012447	STX3 (ENSGEVG00005012412)
Chinese turtle	MODERN SPECIES	1535																RPS6KB2 (ENSPSIG00000015408) #22	PTPRCAP (ENSPSIG00000005157) #23	CORO1B (ENSPSIG00000005181) #24	ENSPSIG00000000290 #26	ENSPSIG00000000297 #26	CABP4 (ENSPSIG00000007263) #27	ACY3 (ENSPSIG00000008013)	ENSPSIG00000000310 ##26
Archosauria	ANCESTRAL SPECIES	41	ENSGT00940000163951.d	ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.c ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000161287 #20	ENSGT00960000189182	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00390000001189.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT00390000017281	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704
Aves	ANCESTRAL SPECIES	42		ENSGT01030000234639.A.b.d.b ##26	ENSGT01030000234639.A.b.c.e.b ##26	ENSGT01030000234639.A.b.d.a ##26	ENSGT01030000234639.A.b.c.f ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Neognathae	ANCESTRAL SPECIES	30	ENSGT01030000234639.A.b.c.f ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT01030000234639.A.b.c.f ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00950000182841.b.a.a.b.b	ENSGT01100000263572.a.a.a.b	ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.d.b ##26	ENSGT01030000234639.A.b.c.e.b ##26	ENSGT01030000234639.A.b.d.a ##26	ENSGT01030000234639.A.b.c.f ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Kakapo	MODERN SPECIES	21	ENSSHBG00005018982 ##26	ENSSHBG00005018977 ##26	ENSSHBG00005018973	ENSSHBG00005018970 ##26	ENSSHBG00005018965 ##26	ENSSHBG00005018961 ##26	ENSSHBG00005018960 ##26	ENSSHBG00005018958 ##26	ENSSHBG00005018955 ##26	KDM2A (ENSSHBG00005018940) #13	CLCF1 (ENSSHBG00005018928)	RAD9A (ENSSHBG00005018922) #18	PPP1CA (ENSSHBG00005018918) #19	ENSSHBG00005018910	ENSSHBG00005018902	RPS6KB2 (ENSSHBG00005018896) #22	ENSSHBG00005018890	CORO1B (ENSSHBG00005018882) #24	GPR152 (ENSSHBG00005018876) #26	CABP4 (ENSSHBG00005018871) #27	OSBP (ENSSHBG00005018853)	PATL1 (ENSSHBG00005018825)	STX3 (ENSSHBG00005018809)	MRPL16 (ENSSHBG00005018806)	ENSSHBG00005018802	ENSSHBG00005018799	ENSSHBG00005018798	ENSSHBG00005018795	BAAT (ENSSHBG00005018790)	ENSSHBG00005018775	PRPF19 (ENSSHBG00005018763)
Passeriformes	ANCESTRAL SPECIES	25	ENSGT01030000234639.A.b.c.e.a.j.b.a ##26	ENSGT01030000234639.A.b.c.e.a.j.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Great tit	MODERN SPECIES	25	ENSPMJG00000007039 ##26	ENSPMJG00000007036 ##26	ENSPMJG00000007035 ##26	RHOD (ENSPMJG00000007034) #12	KDM2A (ENSPMJG00000007031) #13	GRK2 (ENSPMJG00000007030) #14	ANKRD13D (ENSPMJG00000007025) #15	SSH3 (ENSPMJG00000007019) #16	ENSPMJG00000007016	ENSPMJG00000007014	ENSPMJG00000007012	CLCF1 (ENSPMJG00000007011)	RAD9A (ENSPMJG00000006996) #18	PPP1CA (ENSPMJG00000006978) #19	ENSPMJG00000006971	RPS6KB2 (ENSPMJG00000006961) #22	ENSPMJG00000006959	CORO1B (ENSPMJG00000006958) #24	CABP4 (ENSPMJG00000006951) #27	OSBP (ENSPMJG00000006948)	PATL1 (ENSPMJG00000006943)	STX3 (ENSPMJG00000006941)	MRPL16 (ENSPMJG00000006934)	ENSPMJG00000006932	CCDC86 (ENSPMJG00000006931)	BAAT (ENSPMJG00000006930)	ZP1 (ENSPMJG00000006893)	PRPF19 (ENSPMJG00000006887)	ENSPMJG00000006885	TMEM132A (ENSPMJG00000006881)	CD6 (ENSPMJG00000006875)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT01030000234639.A.b.c.e.a.j.b.a ##26	ENSGT01030000234639.A.b.c.e.a.j.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00940000162329	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000163951.c.b	ENSGT01030000234639.A.b.d.b ##26	ENSGT01030000234639.A.b.d.a ##26	ENSGT00940000161731.a #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029
Passeroidea	ANCESTRAL SPECIES	1	ENSGT01030000234639.A.b.d.a ##26	ENSGT01030000234639.A.b.c.e.a.j.b.a ##26	ENSGT01030000234639.A.b.c.e.a.j.a ##26	ENSGT00940000161731.b #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00960000189839	ENSGT00940000159031 #24	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029
Zebra finch	MODERN SPECIES	27	ENSTGUG00000005977 ##26	ENSTGUG00000005978 #12	KDM2A (ENSTGUG00000005980) #13	ENSTGUG00000020335 ##26	ENSTGUG00000028025 #12	GRK2 (ENSTGUG00000006012) #14	ANKRD13D (ENSTGUG00000006094) #15	SSH3 (ENSTGUG00000024239) #16	ENSTGUG00000021475	ENSTGUG00000006113	ENSTGUG00000006114	CLCF1 (ENSTGUG00000021220)	RAD9A (ENSTGUG00000019902) #18	PPP1CA (ENSTGUG00000006149) #19	ENSTGUG00000019259	RPS6KB2 (ENSTGUG00000006119) #22	ENSTGUG00000021108	CABP4 (ENSTGUG00000022413) #27	OSBP (ENSTGUG00000006213)	PATL1 (ENSTGUG00000006222)	STX3 (ENSTGUG00000006244)	MRPL16 (ENSTGUG00000006277)	ENSTGUG00000006278	CCDC86 (ENSTGUG00000006282)	BAAT (ENSTGUG00000018509)	ENSTGUG00000006283	PRPF19 (ENSTGUG00000006319)	TMEM109 (ENSTGUG00000006345)	TMEM132A (ENSTGUG00000006351)	ENSTGUG00000006362	ENSTGUG00000006369
Flycatcher	MODERN SPECIES	24	ENSFALG00000027414 ##26	ENSFALG00000025433 ##26	ENSFALG00000023990 ##26	ENSFALG00000025035 ##26	RHOD (ENSFALG00000012398) #12	KDM2A (ENSFALG00000012392) #13	GRK2 (ENSFALG00000012347) #14	SSH3 (ENSFALG00000012276) #16	POLD4 (ENSFALG00000027860) #17	ENSFALG00000012256	ENSFALG00000012239	CLCF1 (ENSFALG00000012231)	RAD9A (ENSFALG00000012227) #18	CORO1B (ENSFALG00000012176) #24	ENSFALG00000012202	RPS6KB2 (ENSFALG00000012189) #22	ENSFALG00000026285 #27	OSBP (ENSFALG00000012165)	PATL1 (ENSFALG00000012150)	STX3 (ENSFALG00000012131)	MRPL16 (ENSFALG00000012123)	ENSFALG00000012120	CCDC86 (ENSFALG00000028475)	ENSFALG00000012107	ZP1 (ENSFALG00000012091)	PRPF19 (ENSFALG00000012084)	TMEM109 (ENSFALG00000012077)	TMEM132A (ENSFALG00000012067)	ENSFALG00000024710	ENSFALG00000012049	VPS37C (ENSFALG00000012043)
Galloanserae	ANCESTRAL SPECIES	30	ENSGT01030000234639.A.b.c.f ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000161731 #12	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00960000189384	ENSGT00950000183133.f.g.a.a	ENSGT00950000183133.f.g.a.b	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00390000017041 #23	ENSGT00940000159031 #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT01030000234567.B.b.`b	ENSGT00940000162443	ENSGT00390000017281	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00940000163951.c.b.b	ENSGT01030000234639.A.b.d.b ##26	ENSGT01030000234639.A.b.c.e.b ##26	ENSGT01030000234639.A.b.d.a ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031.m #24	ENSGT00940000159031.n #24	ENSGT01030000234639.B #26	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414
Phasianidae_b	ANCESTRAL SPECIES	34		ENSGT01030000234639.A.b.d.b ##26	ENSGT01030000234639.A.b.c.e.b ##26	ENSGT01030000234639.A.b.d.a ##26	ENSGT01030000234639.A.b.c.e.a ##26	ENSGT00940000155484 #13	ENSGT00940000161626 #14	ENSGT00950000182928.A.a.b #15	ENSGT00940000160322 #16	ENSGT00390000005096 #17	ENSGT00950000183133.f.g.a.a	ENSGT00510000048856.C	ENSGT00390000005767.a #18	ENSGT00940000153472.a.b #19	ENSGT00990000203796	ENSGT00940000155062.a #22	ENSGT00940000159031.m #24	ENSGT00940000161468 #27	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT01030000234627.a.b.a.a	ENSGT00390000002038	ENSGT00530000063370.a.a	ENSGT00940000162443	ENSGT01010000222336.a.a.b	ENSGT00940000161188.d	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161029	ENSGT00940000167155
Chicken	MODERN SPECIES	34	MRGPRH (ENSGALG00010022270) ##26	ENSGALG00010022294 ##26	ENSGALG00010022313 ##26	ENSGALG00010022322 ##26	ENSGALG00010022339	KDM2A (ENSGALG00010023166) #13	GRK2 (ENSGALG00010023175) #14	ANKRD13D (ENSGALG00010024205) #15	SSH3 (ENSGALG00010023218) #16	POLD4 (ENSGALG00010023262) #17	ENSGALG00010023397	CLCF1 (ENSGALG00010023466)	RAD9A (ENSGALG00010022504) #18	PPP1CA (ENSGALG00010022526) #19	CARNS1 (ENSGALG00010022409)	RPS6KB2 (ENSGALG00010022422) #22	CORO1B (ENSGALG00010022481) #24	CABP4 (ENSGALG00010020334) #27	OSBP (ENSGALG00010020336)	PATL1 (ENSGALG00010020343)	STX3 (ENSGALG00010020356)	MRPL16 (ENSGALG00010020364)	ENSGALG00010024137	MS4A4A (ENSGALG00010020373)	BAAT (ENSGALG00010020383)	ENSGALG00010020417	PRPF19 (ENSGALG00010020449)	TMEM109 (ENSGALG00010020473)	TMEM132A (ENSGALG00010020476)	CD6 (ENSGALG00010019520)	CD5 (ENSGALG00010019580)
Turkey	MODERN SPECIES	1198												ENSMGAG00000016571	CLCF1 (ENSMGAG00000022283)	ENSMGAG00000018768	ENSMGAG00000016041	RPS6KB2 (ENSMGAG00000004389) #22	CORO1B (ENSMGAG00000004385) #24	CABP4 (ENSMGAG00000006595) #27	ENSMGAG00000004932
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000155062.a #22
Duck	MODERN SPECIES	1975																RPS6KB2 (ENSAPLG00000025888) #22
African ostrich	MODERN SPECIES	1001																RPS6KB2 (ENSSCUG00000013439) #22	CORO1B (ENSSCUG00000013462) #24	CABP4 (ENSSCUG00000013465) #27	OSBP (ENSSCUG00000013467)	PATL1 (ENSSCUG00000013472)	MRPL16 (ENSSCUG00000013476)	ENSSCUG00000013478	ENSSCUG00000013482	ENSSCUG00000013487	BAAT (ENSSCUG00000013489)	ZP1 (ENSSCUG00000013490)	PRPF19 (ENSSCUG00000013502)	TMEM109 (ENSSCUG00000013511)
Australian saltwater crocodile	MODERN SPECIES	21	ENSCPRG00005012130	KDM2A (ENSCPRG00005012193) #13	GRK2 (ENSCPRG00005012206) #14	ANKRD13D (ENSCPRG00005012212) #15	SSH3 (ENSCPRG00005012220) #16	ENSCPRG00005012230	ENSCPRG00005012236	ENSCPRG00005012242	ENSCPRG00005012250	ENSCPRG00005012272	CLCF1 (ENSCPRG00005012283)	RAD9A (ENSCPRG00005012286) #18	PPP1CA (ENSCPRG00005012292) #19	TBC1D10C (ENSCPRG00005012314) #20	ENSCPRG00005012350	RPS6KB2 (ENSCPRG00005012355) #22	PTPRCAP (ENSCPRG00005012359) #23	CORO1B (ENSCPRG00005012364) #24	CABP4 (ENSCPRG00005012368) #27	ACY3 (ENSCPRG00005012373)	OSBP (ENSCPRG00005012387)	PATL1 (ENSCPRG00005012480)	ENSCPRG00005012828	ENSCPRG00005012847	ENSCPRG00005012867	ENSCPRG00005012874
Coelacanth	MODERN SPECIES	2400															aldh3b1 (ENSLACG00000008281)	ENSLACG00000007348 #22	NDUFV1 (ENSLACG00000006744) #34	ENSLACG00000005648	LRRC55 (ENSLACG00000003281)	ENSLACG00000001614	ENSLACG00000000717
Actinopterygii	ANCESTRAL SPECIES	205										ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000155062.a #22	ENSGT00940000159031 #24	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00530000063506.A	ENSGT00940000153246.a.a.b	ENSGT00890000139482	ENSGT00940000158695	ENSGT00390000016307	ENSGT00390000001733	ENSGT00390000002721
Neopterygii	ANCESTRAL SPECIES	2										ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000155062.a #22	ENSGT00740000117056	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000167088	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00940000156842	ENSGT00640000091487	ENSGT01060000248588.a.c.b	ENSGT00390000012346	ENSGT00940000155372
Osteoglossocephalai	ANCESTRAL SPECIES	76	ENSGT00390000017246	ENSGT00950000182938.b.b.b.a.b.a	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000001733	ENSGT00390000016307	ENSGT00950000182924.B.a.a	ENSGT00390000017143	ENSGT00940000154630.b	ENSGT00940000159397	ENSGT00390000013264	ENSGT00390000006503.b	ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00980000199739	ENSGT00730000111690.B	ENSGT00520000055649.a	ENSGT00740000117056	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a	ENSGT00940000157323	ENSGT00390000008458	ENSGT00940000167088	ENSGT00390000008984	ENSGT00940000162309	ENSGT00390000010494	ENSGT00390000016264
Clupeocephala	ANCESTRAL SPECIES	486														ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00730000111690.B.g	ENSGT00520000055649.a
Euteleosteomorpha	ANCESTRAL SPECIES	382														ENSGT00390000013419	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01100000263527.b.b.a.a.b	ENSGT00730000111690.B.g	ENSGT00520000055649.a
Acanthomorphata	ANCESTRAL SPECIES	163	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00990000204792	ENSGT00940000163299.B.b.b	ENSGT00940000155987.b	ENSGT00940000157963	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01060000249351
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00390000011081.q.a	ENSGT01030000234532.B.e.a.a.b	ENSGT00390000002721	ENSGT01050000244891.B	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01060000249351
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Tiger tail seahorse	MODERN SPECIES	282	ENSHCOG00000001738	fbxo8 (ENSHCOG00000001746)	hand2 (ENSHCOG00000001752)	GPM6A (ENSHCOG00000001758)	ENSHCOG00000001764	GLRA3 (ENSHCOG00000001778)	wdr17 (ENSHCOG00000001805)	hmgb2a (ENSHCOG00000001815)	pmm2 (ENSHCOG00000001822)	mtmr7b (ENSHCOG00000001833)	ENSHCOG00000001844	ENSHCOG00000001854	ENSHCOG00000001869	patl1 (ENSHCOG00000001898)	ENSHCOG00000001913	RPS6KB2 (ENSHCOG00000001946) #22	ENSHCOG00000001961	ENSHCOG00000001963	ENSHCOG00000001978	ENSHCOG00000001988	ENSHCOG00000002010	ENSHCOG00000002019	neurl1aa (ENSHCOG00000002024)	SH3PXD2A (ENSHCOG00000002037)	stn1 (ENSHCOG00000002048)	SLK (ENSHCOG00000002060)	aplnrb (ENSHCOG00000002072)	SMIM26 (ENSHCOG00000002079)	dtd1 (ENSHCOG00000002105)	SLC24A3 (ENSHCOG00000002123)	RIN2 (ENSHCOG00000002148)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Tetraodontidae	ANCESTRAL SPECIES	34													ENSGT00940000158105	ENSGT00390000013419	ENSGT00390000003049.b.a	ENSGT00940000155062.a #22	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198753	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.d	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b
Tetraodon	MODERN SPECIES	10	FBXO10 (ENSTNIG00000017811)	ENSTNIG00000017810	camk2d2 (ENSTNIG00000017809)	ENSTNIG00000017807	ENSTNIG00000017808	hpf1 (ENSTNIG00000017806)	ppp2r2ca (ENSTNIG00000017805)	WFS1 (ENSTNIG00000017804)	crmp1 (ENSTNIG00000017803)	ENSTNIG00000001129	ENSTNIG00000017802	vps37c (ENSTNIG00000017801)	ENSTNIG00000017800	ENSTNIG00000017799	ndufs8a (ENSTNIG00000001102)	RPS6KB2 (ENSTNIG00000017798) #22	ENSTNIG00000003748	neurl1aa (ENSTNIG00000014164)	SH3PXD2A (ENSTNIG00000014163)	stn1 (ENSTNIG00000014162)	slkb (ENSTNIG00000014161)	ENSTNIG00000014160	dtd1 (ENSTNIG00000014159)	SLC24A3 (ENSTNIG00000014158)	RIN2 (ENSTNIG00000014157)	EEF1A1 (ENSTNIG00000014156)	ENSTNIG00000014155	RIMS1 (ENSTNIG00000014154)	krt97 (ENSTNIG00000014153)	ENSTNIG00000014152	ENSTNIG00000014151
Fugu	MODERN SPECIES	8	ppp2r2ca (ENSTRUG00000007774)	WFS1 (ENSTRUG00000031502)	crmp1 (ENSTRUG00000006479)	ENSTRUG00000006145	vps37c (ENSTRUG00000006049)	ENSTRUG00000023852	ENSTRUG00000026670	ENSTRUG00000029491	stx3a (ENSTRUG00000005789)	kdm2aa (ENSTRUG00000005339) #13	spcs3 (ENSTRUG00000029852)	ENSTRUG00000020693	galnt7 (ENSTRUG00000004719)	saraf (ENSTRUG00000004686)	ndufs8a (ENSTRUG00000004480)	RPS6KB2 (ENSTRUG00000003821) #22	ENSTRUG00000002790	ENSTRUG00000004155	neurl1aa (ENSTRUG00000010201)	SH3PXD2A (ENSTRUG00000009926)	stn1 (ENSTRUG00000009766)	slkb (ENSTRUG00000009332)	ENSTRUG00000030764	SMIM26 (ENSTRUG00000023360)	dtd1 (ENSTRUG00000009122)	SLC24A3 (ENSTRUG00000008760)	RIN2 (ENSTRUG00000008617)	ENSTRUG00000008301	RIMS1 (ENSTRUG00000008061)	krt97 (ENSTRUG00000007514)	ENSTRUG00000006989
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Ballan wrasse	MODERN SPECIES	124																RPS6KB2 (ENSLBEG00000009739) #22	ENSLBEG00000009717	ENSLBEG00000009708	ENSLBEG00000009573	ENSLBEG00000009449	neurl1aa (ENSLBEG00000009389)	SH3PXD2A (ENSLBEG00000009293)	stn1 (ENSLBEG00000009231)	slkb (ENSLBEG00000009202)	dtd1 (ENSLBEG00000009154)	SLC24A3 (ENSLBEG00000009089)	RIN2 (ENSLBEG00000009046)	ENSLBEG00000008998	ENSLBEG00000008974	EEF1A1 (ENSLBEG00000008936)	ENSLBEG00000008809
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00390000011272	ENSGT00390000003049.b.a	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000168136	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Gilthead seabream	MODERN SPECIES		ENSSAUG00010001464	IGFBP4 (ENSSAUG00010001470)	SMARCE1 (ENSSAUG00010001477)	ccr7 (ENSSAUG00010001767)	TNS4 (ENSSAUG00010001774)	KRT222 (ENSSAUG00010001784)	krt97 (ENSSAUG00010001794)	RIMS1 (ENSSAUG00010001933)	ENSSAUG00010005554	EEF1A1 (ENSSAUG00010006843)	RIN2 (ENSSAUG00010006846)	SLC24A3 (ENSSAUG00010006850)	dtd1 (ENSSAUG00010006855)	ENSSAUG00010006857	ENSSAUG00010006872	RPS6KB2 (ENSSAUG00010007075) #22	ENSSAUG00010008266	ENSSAUG00010008268	ENSSAUG00010008286	ENSSAUG00010008526	neurl1aa (ENSSAUG00010008681)	SH3PXD2A (ENSSAUG00010008689)	stn1 (ENSSAUG00010008836)	slkb (ENSSAUG00010008906)	ENSSAUG00010012937	gria2a (ENSSAUG00010012962)	dctd (ENSSAUG00010013208)	dctd (ENSSAUG00010013206)	dctd (ENSSAUG00010013210)	dctd (ENSSAUG00010013213)	TENM3 (ENSSAUG00010013265)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000163514.C	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b
Large yellow croaker	MODERN SPECIES		ENSLCRG00005017034	ENSLCRG00005017033	ENSLCRG00005017032	ENSLCRG00005017031	ENSLCRG00005017028	ENSLCRG00005017013	ENSLCRG00005017005	DIAPH1 (ENSLCRG00005015452)	ENSLCRG00005015437	TRPC7 (ENSLCRG00005015318)	ENSLCRG00005015313	DOCK2 (ENSLCRG00005014555)	VPS13D (ENSLCRG00005011523)	slc38a5b (ENSLCRG00005009664)	ENSLCRG00005009622	RPS6KB2 (ENSLCRG00005009003) #22	ENSLCRG00005008999	ENSLCRG00005008997	ENSLCRG00005007789	ENSLCRG00005007768	ENSLCRG00005005434	neurl1aa (ENSLCRG00005005390)	SH3PXD2A (ENSLCRG00005005384)	stn1 (ENSLCRG00005005380)	slkb (ENSLCRG00005002201)	ENSLCRG00005002151	ENSLCRG00005002149	SMIM26 (ENSLCRG00005002148)	dtd1 (ENSLCRG00005002147)	SLC24A3 (ENSLCRG00005002139)	RIN2 (ENSLCRG00005002138)
European seabass	MODERN SPECIES	20	wdr17 (ENSDLAG00005012661)	ENSDLAG00005029916	ENSDLAG00005033937	ENSDLAG00005014026	ENSDLAG00005014095	ENSDLAG00005014121	ENSDLAG00005030996	ENSDLAG00005014143	ENSDLAG00005032477	ENSDLAG00005028830	ENSDLAG00005028439	ENSDLAG00005017418	ENSDLAG00005029797	ENSDLAG00005032965	ENSDLAG00005014236	ENSDLAG00005014448 #22	ENSDLAG00005014739	ENSDLAG00005014751	ENSDLAG00005029910	ENSDLAG00005029141	ENSDLAG00005030943	ENSDLAG00005014805	ENSDLAG00005014887	ENSDLAG00005006423	ENSDLAG00005003059	ENSDLAG00005014976	neurl1aa (ENSDLAG00005018019)	ENSDLAG00005018046	SLK (ENSDLAG00005018450)	ENSDLAG00005030620	DTD1 (ENSDLAG00005033950)
Perciformes	ANCESTRAL SPECIES	2															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01030000234934.f	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT01020000230351.B.j.a	ENSGT00390000005096 #17	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000158942.a	ENSGT00950000183012.A.b
Lumpfish	MODERN SPECIES		wdr17 (ENSCLMG00005018275)	ENSCLMG00005018277	ENSCLMG00005018279	ENSCLMG00005018282	ENSCLMG00005018285	ENSCLMG00005018286	TESK1 (ENSCLMG00005018287)	TMX2 (ENSCLMG00005018288)	ENSCLMG00005018290	p2rx3b (ENSCLMG00005018292)	ENSCLMG00005018331	pold4 (ENSCLMG00005018333) #17	ENSCLMG00005018361	slc43a1b (ENSCLMG00005019621)	ENSCLMG00005019628	RPS6KB2 (ENSCLMG00005019638) #22	ENSCLMG00005019747	ENSCLMG00005019750	ENSCLMG00005019770	ENSCLMG00005019835	neurl1aa (ENSCLMG00005019836)	SH3PXD2A (ENSCLMG00005019839)	stn1 (ENSCLMG00005019841)	slkb (ENSCLMG00005019844)	ENSCLMG00005019848	dtd1 (ENSCLMG00005019851)	SLC24A3 (ENSCLMG00005019855)	RIN2 (ENSCLMG00005019858)	ENSCLMG00005019860	vps37c (ENSCLMG00005019863)	ENSCLMG00005019865
Stickleback	MODERN SPECIES	4	dctd (ENSGACG00000016400)	TENM3 (ENSGACG00000016390)	vegfc (ENSGACG00000016386)	ENSGACG00000016383	ENSGACG00000016382	ENSGACG00000016379	ENSGACG00000016377	ENSGACG00000016375	TESK1 (ENSGACG00000016374)	tmx2b (ENSGACG00000016364)	zdhhc5a (ENSGACG00000016361)	p2rx3b (ENSGACG00000016347)	ENSGACG00000016342	slc43a1b (ENSGACG00000016335)	ENSGACG00000016328	RPS6KB2 (ENSGACG00000016324) #22	ENSGACG00000016322	ENSGACG00000016319	neurl1aa (ENSGACG00000016316)	SH3PXD2A (ENSGACG00000016310)	stn1 (ENSGACG00000016306)	slkb (ENSGACG00000016303)	ENSGACG00000016293	SMIM26 (ENSGACG00000016292)	dtd1 (ENSGACG00000016291)	SLC24A3 (ENSGACG00000016278)	RIN2 (ENSGACG00000016274)	ENSGACG00000016272	vps37c (ENSGACG00000016269)	ENSGACG00000016267	tmem176 (ENSGACG00000016266)
Perciformes_a	ANCESTRAL SPECIES																ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01030000234934.f	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Pike perch	MODERN SPECIES	14	ARHGAP42 (ENSSLUG00000001065)	cntn5 (ENSSLUG00000001094)	FBXO40 (ENSSLUG00000001101)	ttc36 (ENSSLUG00000001107)	ENSSLUG00000001110	ENSSLUG00000001115	fat3a (ENSSLUG00000001164)	ENSSLUG00000001215	ENSSLUG00000001217	ENSSLUG00000001220	GAL3ST2 (ENSSLUG00000001225)	ENSSLUG00000001232	ENSSLUG00000001238	kcnj13 (ENSSLUG00000001243)	efhd1 (ENSSLUG00000001244)	RPS6KB2 (ENSSLUG00000001259) #22	ENSSLUG00000001295	ENSSLUG00000001297	ENSSLUG00000001300	ENSSLUG00000001302	ENSSLUG00000001304	ENSSLUG00000001311	ENSSLUG00000001323	ENSSLUG00000001325	ENSSLUG00000001327	ENSSLUG00000001332
Channel bull blenny	MODERN SPECIES		ADISSP (ENSCGOG00000007559)	ENSCGOG00000007556	tmx2b (ENSCGOG00000007447)	zdhhc5a (ENSCGOG00000007444)	slc43a1b (ENSCGOG00000007195)	ENSCGOG00000001541	pold4 (ENSCGOG00000001322) #17	p2rx3b (ENSCGOG00000001240)	ENSCGOG00000001230	chchd10 (ENSCGOG00000001225)	ddt (ENSCGOG00000001222)	gstt1b (ENSCGOG00000001216)	ENSCGOG00000001214	ENSCGOG00000001213	ENSCGOG00000001186	RPS6KB2 (ENSCGOG00000001028) #22	ENSCGOG00000001009	ENSCGOG00000001008	ENSCGOG00000000905	ENSCGOG00000000608	neurl1aa (ENSCGOG00000016424)	SH3PXD2A (ENSCGOG00000016358)	stn1 (ENSCGOG00000016351)	slkb (ENSCGOG00000014887)	ENSCGOG00000014863	SLC24A3 (ENSCGOG00000014741)	RIN2 (ENSCGOG00000014735)	ENSCGOG00000014734	EEF1A1 (ENSCGOG00000013916)	ENSCGOG00000013545	RIMS1 (ENSCGOG00000012729)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Carangaria	ANCESTRAL SPECIES		ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT01100000263568.b.a.c.b.a.b.h.a	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b
Pleuronectoidei	ANCESTRAL SPECIES	22				ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.d	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Turbot	MODERN SPECIES	20	ENSSMAG00000008085	ENSSMAG00000021981	gcdha (ENSSMAG00000008177)	acp5a (ENSSMAG00000008214)	ilf3a (ENSSMAG00000008244)	ptger1a (ENSSMAG00000008320)	ENSSMAG00000023192	ENSSMAG00000008367	ENSSMAG00000009345	ENSSMAG00000009373	ENSSMAG00000009404	ENSSMAG00000009459	ENSSMAG00000009482	ENSSMAG00000009548	ENSSMAG00000009570	ENSSMAG00000009624 #22	ENSSMAG00000009667	ENSSMAG00000009691	ENSSMAG00000009768	neurl1aa (ENSSMAG00000009853)	SH3PXD2A (ENSSMAG00000009908)	stn1 (ENSSMAG00000010029)	SLK (ENSSMAG00000010057)	ENSSMAG00000010117	DTD1 (ENSSMAG00000037240)	SLC24A3 (ENSSMAG00000010158)	RIN2 (ENSSMAG00000010253)	ENSSMAG00000010287	ENSSMAG00000010349	ENSSMAG00000010378	ENSSMAG00000010490
Tongue sole	MODERN SPECIES	19	zgc:172091 (ENSCSEG00000008002)	slc25a10b (ENSCSEG00000008008)	ENSCSEG00000008027	nanos3 (ENSCSEG00000008032)	crb3b (ENSCSEG00000008038)	slc26a11 (ENSCSEG00000008050)	sgsh (ENSCSEG00000008106)	sgsh (ENSCSEG00000008128)	npb (ENSCSEG00000008163)	SIRT7 (ENSCSEG00000008179)	pcyt2 (ENSCSEG00000008194)	ENSCSEG00000008237	ENSCSEG00000008248	patl1 (ENSCSEG00000008261)	ENSCSEG00000008288	RPS6KB2 (ENSCSEG00000008322) #22	ENSCSEG00000008336	ENSCSEG00000009670	ENSCSEG00000009703	ENSCSEG00000009714	SMARCA4 (ENSCSEG00000009723)	ENSCSEG00000009760	atg4da (ENSCSEG00000009774)	MAST1 (ENSCSEG00000009799)	rnaseh2a (ENSCSEG00000009842)	SOX10 (ENSCSEG00000009865)	ENSCSEG00000009882	ENSCSEG00000009951	ENSCSEG00000009965	ENSCSEG00000009983	ENSCSEG00000010002
Carangaria_A	ANCESTRAL SPECIES	62															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00940000160772	ENSGT00940000158356
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	261	gria2a (ENSLCAG00010007982)	GPM6A (ENSLCAG00010008112)	ENSLCAG00010008120	glra3 (ENSLCAG00010008149)	hpgd (ENSLCAG00010008272)	wdr17 (ENSLCAG00010008315)	hmgb2a (ENSLCAG00010008345)	pmm2 (ENSLCAG00010008352)	mtmr7b (ENSLCAG00010008364)	ENSLCAG00010008382	ENSLCAG00010008413	patl1 (ENSLCAG00010008420)	ENSLCAG00010008436	ENSLCAG00010008444	ENSLCAG00010008453	RPS6KB2 (ENSLCAG00010008505) #22	ENSLCAG00010008792	ENSLCAG00010008804	ENSLCAG00010008859
Barramundi perch	MODERN SPECIES	464						ENSLCAG00010012091	ENSLCAG00010012095	ENSLCAG00010012109	AXIN1 (ENSLCAG00010012115)	ERI2 (ENSLCAG00010012125)	thumpd1 (ENSLCAG00010012137)	ENSLCAG00010012141	parn (ENSLCAG00010012153)	ELFN1 (ENSLCAG00010012168)	mad1l1 (ENSLCAG00010012179)	RPS6KB2 (ENSLCAG00010012206) #22
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263476.B.b.a.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00860000134050	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00980000200302	ENSGT00940000157122.b.b
Greater amberjack	MODERN SPECIES	20	ENSSDUG00000004923	RIN2 (ENSSDUG00000004936)	SLC24A3 (ENSSDUG00000004963)	dtd1 (ENSSDUG00000005018)	SMIM26 (ENSSDUG00000005036)	slkb (ENSSDUG00000005052)	stn1 (ENSSDUG00000005081)	SH3PXD2A (ENSSDUG00000005118)	neurl1aa (ENSSDUG00000005144)	ENSSDUG00000005183	ENSSDUG00000005227	ENSSDUG00000005271	ENSSDUG00000005281	ENSSDUG00000005296	ENSSDUG00000005305	RPS6KB2 (ENSSDUG00000005315) #22	patl1 (ENSSDUG00000005362)	dctd (ENSSDUG00000005434)	ENSSDUG00000005449	ENSSDUG00000005488	ENSSDUG00000005523	ENSSDUG00000005531	mtmr7b (ENSSDUG00000005550)	pmm2 (ENSSDUG00000005606)	hmgb2a (ENSSDUG00000005632)	ENSSDUG00000005654
Yellowtail amberjack	MODERN SPECIES	3209				ENSSLDG00000018440	RIN2 (ENSSLDG00000018455)	SLC24A3 (ENSSLDG00000018479)	dtd1 (ENSSLDG00000018545)	slkb (ENSSLDG00000018565)	stn1 (ENSSLDG00000018589)	SH3PXD2A (ENSSLDG00000018642)	neurl1aa (ENSSLDG00000018741)	ENSSLDG00000018786	ENSSLDG00000018868	ENSSLDG00000018916	ENSSLDG00000018968	RPS6KB2 (ENSSLDG00000019011) #22	ENSSLDG00000019108	patl1 (ENSSLDG00000019146)	ENSSLDG00000019241	ENSSLDG00000019262	mtmr7b (ENSSLDG00000019287)	pmm2 (ENSSLDG00000019311)	hmgb2a (ENSSLDG00000019332)	wdr17 (ENSSLDG00000019354)	hpgd (ENSSLDG00000019409)	glra3 (ENSSLDG00000019421)	ENSSLDG00000019437	GPM6A (ENSSLDG00000019455)	gria2a (ENSSLDG00000019507)	GLRB (ENSSLDG00000019634)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00980000201148	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B.l	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Zig-zag eel	MODERN SPECIES		hand2 (ENSMAMG00000003557)	ENSMAMG00000028518	ENSMAMG00000003580	ENSMAMG00000026834	ENSMAMG00000027721	glra3 (ENSMAMG00000003626)	hpgd (ENSMAMG00000026813)	wdr17 (ENSMAMG00000003713)	ENSMAMG00000003816	ENSMAMG00000003832	ENSMAMG00000003860	ENSMAMG00000003905	ENSMAMG00000003950	ENSMAMG00000004038	ENSMAMG00000004063	ENSMAMG00000004097 #22	ENSMAMG00000004196	ENSMAMG00000004218	ENSMAMG00000004269	neurl1aa (ENSMAMG00000004358)	SH3PXD2A (ENSMAMG00000004389)	stn1 (ENSMAMG00000004419)	SLK (ENSMAMG00000004440)	SMIM26 (ENSMAMG00000004480)	DTD1 (ENSMAMG00000028550)	SLC24A3 (ENSMAMG00000004489)	RIN2 (ENSMAMG00000004527)	ENSMAMG00000007730	ENSMAMG00000004581	ENSMAMG00000004685	ENSMAMG00000004898
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00980000201148	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B.k	ENSGT00940000156696.B.l	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Climbing perch	MODERN SPECIES		ENSATEG00000002567	ENSATEG00000002531	ENSATEG00000002518	ENSATEG00000002482	ENSATEG00000002444	wdr17 (ENSATEG00000002342)	ENSATEG00000002324	ENSATEG00000002288	ENSATEG00000002240	ENSATEG00000002237	ENSATEG00000002230	ENSATEG00000002193	ENSATEG00000002144	ENSATEG00000002122	ENSATEG00000002070	ENSATEG00000002017 #22	ENSATEG00000002013	ENSATEG00000001890	ENSATEG00000001759	ENSATEG00000001724	neurl1aa (ENSATEG00000001684)	SH3PXD2A (ENSATEG00000001601)	stn1 (ENSATEG00000001592)	SLK (ENSATEG00000001585)	ENSATEG00000001557	DTD1 (ENSATEG00000029992)	SLC24A3 (ENSATEG00000001443)	RIN2 (ENSATEG00000001431)	ENSATEG00000026801	ENSATEG00000001388	ENSATEG00000001300
Siamese fighting fish	MODERN SPECIES		tmx2b (ENSBSLG00000023146)	TESK1 (ENSBSLG00000023178)	ADISSP (ENSBSLG00000023218)	ENSBSLG00000023229	ENSBSLG00000023239	ENSBSLG00000023248	TFAP4 (ENSBSLG00000023258)	SRL (ENSBSLG00000023269)	ADCY9 (ENSBSLG00000023274)	CREBBP (ENSBSLG00000023331)	ENSBSLG00000024262	mcrip2 (ENSBSLG00000024265)	gde1 (ENSBSLG00000024268)	tmem186 (ENSBSLG00000024270)	ENSBSLG00000024282	RPS6KB2 (ENSBSLG00000024359) #22	ENSBSLG00000024920	ENSBSLG00000024928	ENSBSLG00000024935	ENSBSLG00000005070	ENSBSLG00000007057	ENSBSLG00000009265	ENSBSLG00000009275	neurl1aa (ENSBSLG00000009287)	SH3PXD2A (ENSBSLG00000009349)	stn1 (ENSBSLG00000009367)	slkb (ENSBSLG00000009441)	dtd1 (ENSBSLG00000011467)	SLC24A3 (ENSBSLG00000011681)	RIN2 (ENSBSLG00000011909)	ENSBSLG00000011966
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00940000177791	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00990000207926	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000175285	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Atherinomorphae	ANCESTRAL SPECIES	53																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000167646	ENSGT00940000177894	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000168028	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00950000182969.B.c.a.b	ENSGT00940000159655
Indian medaka	MODERN SPECIES	21	ENSOMEG00000021726	elf2b (ENSOMEG00000021691)	NOCT (ENSOMEG00000021625)	ENSOMEG00000021602	ENSOMEG00000021588	slc43a3a (ENSOMEG00000021570)	dctd (ENSOMEG00000021534)	TENM3 (ENSOMEG00000021448)	ENSOMEG00000021371	vegfc (ENSOMEG00000021355)	ENSOMEG00000021322	ENSOMEG00000000562	ENSOMEG00000021246	ENSOMEG00000021220	ENSOMEG00000021212	RPS6KB2 (ENSOMEG00000021168) #22	ENSOMEG00000021107	ENSOMEG00000021072	ENSOMEG00000020906	neurl1aa (ENSOMEG00000020787)	SH3PXD2A (ENSOMEG00000020700)	slkb (ENSOMEG00000020542)	stn1 (ENSOMEG00000020439)	ENSOMEG00000020399	dtd1 (ENSOMEG00000020384)	SLC24A3 (ENSOMEG00000020364)	RIN2 (ENSOMEG00000020275)	ENSOMEG00000020245	ENSOMEG00000020175	RIMS1 (ENSOMEG00000019970)	krt97 (ENSOMEG00000019636)
Javanese ricefish	MODERN SPECIES		naa15b (ENSOJAG00000022103)	RAB33B (ENSOJAG00000022099)	elf2b (ENSOJAG00000022092)	NOCT (ENSOJAG00000022083)	ENSOJAG00000022075	ENSOJAG00000022066	dctd (ENSOJAG00000022053)	atf1 (ENSOJAG00000022043)	TENM3 (ENSOJAG00000019297)	vegfc (ENSOJAG00000018818)	ENSOJAG00000018807	ENSOJAG00000018795	ENSOJAG00000018773	ENSOJAG00000018743	ENSOJAG00000018416	RPS6KB2 (ENSOJAG00000017187) #22	ENSOJAG00000017045	ENSOJAG00000016816	ENSOJAG00000016780	ENSOJAG00000016384	neurl1aa (ENSOJAG00000016314)	SH3PXD2A (ENSOJAG00000016104)	stn1 (ENSOJAG00000016081)	slkb (ENSOJAG00000014646)	dtd1 (ENSOJAG00000014567)	SLC24A3 (ENSOJAG00000014331)	RIN2 (ENSOJAG00000014046)	ENSOJAG00000013990	ENSOJAG00000013977	ENSOJAG00000013760	RIMS1 (ENSOJAG00000012649)
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00870000137155	ENSGT00950000183174.B.a.e	ENSGT00940000157090.h	ENSGT00940000154953.b	ENSGT00940000155249.g	ENSGT00940000163186	ENSGT00940000157622.a.a	ENSGT00940000153676.a	ENSGT01030000234566.e.b.a.a.a.a	ENSGT00940000156167.b	ENSGT00390000004697	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000002071	elf2b (ENSORLG00000002091)	NOCT (ENSORLG00000002100)	ENSORLG00000023189	slc43a3a (ENSORLG00000002116)	dctd (ENSORLG00000002127)	ENSORLG00000002165	vegfc (ENSORLG00000002180)	ENSORLG00000029382	ENSORLG00000002191	ENSORLG00000022778	ENSORLG00000002209	ENSORLG00000028979	ENSORLG00000002249	ENSORLG00000023252	RPS6KB2 (ENSORLG00000002272) #22	ENSORLG00000027842	ENSORLG00000026236	ENSORLG00000030303	ENSORLG00000029043	ENSORLG00000028680	ENSORLG00000026615	ENSORLG00000026837	neurl1aa (ENSORLG00000002316)	SH3PXD2A (ENSORLG00000002337)	stn1 (ENSORLG00000002353)	slkb (ENSORLG00000002380)	dtd1 (ENSORLG00000002441)	SLC24A3 (ENSORLG00000002454)	RIN2 (ENSORLG00000002466)	ENSORLG00000028162
Chinese medaka	MODERN SPECIES	218	naa15b (ENSOSIG00000005351)	RAB33B (ENSOSIG00000007092)	elf2b (ENSOSIG00000007093)	NOCT (ENSOSIG00000007097)	ENSOSIG00000007098	slc43a3a (ENSOSIG00000007099)	dctd (ENSOSIG00000007102)	TENM3 (ENSOSIG00000007174)	ENSOSIG00000016828	vegfc (ENSOSIG00000016830)	ENSOSIG00000016832	ENSOSIG00000016837	ENSOSIG00000016840	ENSOSIG00000016841	ENSOSIG00000016843	RPS6KB2 (ENSOSIG00000016911) #22	ENSOSIG00000018609
Cyprinodontiformes	ANCESTRAL SPECIES	76																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b
Cyprinodontoidei	ANCESTRAL SPECIES	24																ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000175362	ENSGT00730000111912.A.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Platyfish	MODERN SPECIES	19	glra3 (ENSXMAG00000017591)	hpgd (ENSXMAG00000025441)	ENSXMAG00000022041	ENSXMAG00000022980	hmgb2a (ENSXMAG00000012281)	pmm2 (ENSXMAG00000012252)	mtmr7b (ENSXMAG00000012190)	ENSXMAG00000027108	ENSXMAG00000024644	patl1 (ENSXMAG00000013834)	ENSXMAG00000029189	ENSXMAG00000007906	ENSXMAG00000027685	ENSXMAG00000010145	DTX4 (ENSXMAG00000028593)	RPS6KB2 (ENSXMAG00000004706) #22	ENSXMAG00000026114	ENSXMAG00000027118	ENSXMAG00000022733	ENSXMAG00000010459	ENSXMAG00000010410	neurl1aa (ENSXMAG00000010401)	SH3PXD2A (ENSXMAG00000010386)	stn1 (ENSXMAG00000010374)	slkb (ENSXMAG00000010323)	SMIM26 (ENSXMAG00000010293)	dtd1 (ENSXMAG00000010278)	SLC24A3 (ENSXMAG00000010863)	RIN2 (ENSXMAG00000010264)	aimp1a (ENSXMAG00000010255)	dkk2 (ENSXMAG00000010254)
Poecilia	ANCESTRAL SPECIES	36	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000156296	ENSGT00940000175362	ENSGT00730000111912.A.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Guppy	MODERN SPECIES	439	hmgb2a (ENSPREG00000004023)	mtmr7b (ENSPREG00000004011)	ENSPREG00000003983	ENSPREG00000003977	ENSPREG00000003915	patl1 (ENSPREG00000003874)	ENSPREG00000003856	ENSPREG00000003797	ENSPREG00000003556	ENSPREG00000003504	ENSPREG00000003463	ENSPREG00000003442	ENSPREG00000003419	ENSPREG00000003403	ENSPREG00000003372	RPS6KB2 (ENSPREG00000003303) #22	ENSPREG00000003281	ENSPREG00000003257	ENSPREG00000003119	ENSPREG00000003050	neurl1aa (ENSPREG00000003006)	SH3PXD2A (ENSPREG00000002929)	stn1 (ENSPREG00000002904)	slkb (ENSPREG00000002838)	ENSPREG00000002796	dtd1 (ENSPREG00000002775)	SLC24A3 (ENSPREG00000002750)	RIN2 (ENSPREG00000002721)	aimp1a (ENSPREG00000002704)	dkk2 (ENSPREG00000002679)	papss1 (ENSPREG00000002639)
NAME_6	ANCESTRAL SPECIES	177														ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b
Amazon molly	MODERN SPECIES	367																RPS6KB2 (ENSPFOG00000005547) #22	ENSPFOG00000024667	ENSPFOG00000005981	ENSPFOG00000007665	neurl1aa (ENSPFOG00000009159)	SH3PXD2A (ENSPFOG00000009258)	stn1 (ENSPFOG00000009409)	slkb (ENSPFOG00000009525)	ENSPFOG00000009887	SMIM26 (ENSPFOG00000010226)	dtd1 (ENSPFOG00000010227)	SLC24A3 (ENSPFOG00000010286)	RIN2 (ENSPFOG00000010495)	aimp1a (ENSPFOG00000010749)	dkk2 (ENSPFOG00000010805)	papss1 (ENSPFOG00000010859)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	2534																RPS6KB2 (ENSPLAG00000014571) #22	ENSPLAG00000014531
Sailfin molly	MODERN SPECIES	2967															ENSPLAG00000016093	ENSPLAG00000016108 #22
NAME_4	ANCESTRAL SPECIES	169														ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a.d	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000154950.y.a.c	ENSGT00940000164073.a	ENSGT00390000009613.b	ENSGT00940000157370.b
Sheepshead minnow	MODERN SPECIES	281																RPS6KB2 (ENSCVAG00000011611) #22	ENSCVAG00000011577	ENSCVAG00000011571	ENSCVAG00000011502	ENSCVAG00000011430	ENSCVAG00000011408	sms (ENSCVAG00000000303)	ENSCVAG00000011355	gabrr3a (ENSCVAG00000011341)	ENSCVAG00000011310	ENSCVAG00000011288	ENSCVAG00000011276	ENSCVAG00000011262	ENSCVAG00000011251	ENSCVAG00000011062	pcyt1bb (ENSCVAG00000011048)
Mummichog	MODERN SPECIES	985														ENSFHEG00000015914	ENSFHEG00000015925	RPS6KB2 (ENSFHEG00000016002) #22
Aplocheiloidei	ANCESTRAL SPECIES	99	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000154866.B.b	ENSGT00940000166983.d	ENSGT00390000011055	ENSGT00940000158153.a	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858
Mangrove rivulus	MODERN SPECIES	297												EEF1A1 (ENSKMAG00000020147)	RIN2 (ENSKMAG00000020173)	ENSKMAG00000020233	ENSKMAG00000020240	RPS6KB2 (ENSKMAG00000020276) #22	ENSKMAG00000020358	GRIK5 (ENSKMAG00000020380)	ENSKMAG00000020409	ENSKMAG00000020421	IGKV2D-30 (ENSKMAG00000020435)
Turquoise killifish	MODERN SPECIES	112												ENSNFUG00015018531	EEF1A1A (ENSNFUG00015018495)	RIN2 (ENSNFUG00015018490)	ENSNFUG00015018483	RPS6KB2 (ENSNFUG00015018480) #22	ENSNFUG00015018479
Ovalentaria_B	ANCESTRAL SPECIES	4															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Pomacentridae	ANCESTRAL SPECIES	85															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Bicolor damselfish	MODERN SPECIES	1368															ENSSPAG00000001232	RPS6KB2 (ENSSPAG00000001176) #22	ENSSPAG00000001155
Pomacentridae_A	ANCESTRAL SPECIES	13															ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000155933.b.b
Spiny chromis	MODERN SPECIES	1720															ENSAPOG00000000564	RPS6KB2 (ENSAPOG00000019776) #22	ENSAPOG00000019792
Amphiprion	ANCESTRAL SPECIES																ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00940000176858	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000180729	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.c.a
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000011242	ENSAPEG00000011264	pin1 (ENSAPEG00000011284)	UBL5 (ENSAPEG00000011322)	VAV1 (ENSAPEG00000011348)	ENSAPEG00000011483	TRIP10 (ENSAPEG00000011594)	ENSAPEG00000011639	ENSAPEG00000011670	OLFM2 (ENSAPEG00000011686)	ENSAPEG00000011718	ENSAPEG00000011756	ENSAPEG00000011765	ENSAPEG00000011772	ENSAPEG00000011844	RPS6KB2 (ENSAPEG00000011904) #22	ENSAPEG00000011971	ENSAPEG00000011983	ENSAPEG00000012014	ENSAPEG00000012156	ENSAPEG00000012255	neurl1aa (ENSAPEG00000012299)	SH3PXD2A (ENSAPEG00000012345)	stn1 (ENSAPEG00000012396)	slkb (ENSAPEG00000012404)	SMIM26 (ENSAPEG00000012413)	dtd1 (ENSAPEG00000012431)	SLC24A3 (ENSAPEG00000012473)	RIN2 (ENSAPEG00000012498)	ENSAPEG00000012510	ENSAPEG00000012536
Clown anemonefish	MODERN SPECIES	1867															ENSAOCG00000013360	RPS6KB2 (ENSAOCG00000013401) #22
Cichlidae	ANCESTRAL SPECIES	32	ENSGT00940000159647	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664	ENSGT00940000171885	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602
Midas cichlid	MODERN SPECIES	1111						ENSACIG00000005680	ENSACIG00000005649	EEF1A1 (ENSACIG00000005630)	ENSACIG00000005620	ENSACIG00000005593	RIN2 (ENSACIG00000005564)	SLC24A3 (ENSACIG00000005525)	dtd1 (ENSACIG00000005511)	ENSACIG00000005499	ENSACIG00000005467	RPS6KB2 (ENSACIG00000005433) #22	ENSACIG00000005422	ENSACIG00000005419	ENSACIG00000005361	ENSACIG00000005322
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.b	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602
Nile tilapia	MODERN SPECIES	18	ENSONIG00000009010	IGFBP4 (ENSONIG00000009007)	ENSONIG00000009004	ccr7 (ENSONIG00000030896)	KRT222 (ENSONIG00000008997)	krt97 (ENSONIG00000008991)	RIMS1 (ENSONIG00000008981)	ENSONIG00000008979	EEF1A1 (ENSONIG00000043142)	ENSONIG00000008974	RIN2 (ENSONIG00000033297)	SLC24A3 (ENSONIG00000008969)	dtd1 (ENSONIG00000030547)	ENSONIG00000042570	ENSONIG00000008963	RPS6KB2 (ENSONIG00000008956) #22	ENSONIG00000022976	ENSONIG00000008941	ENSONIG00000008935	ENSONIG00000037720	neurl1aa (ENSONIG00000008931)	SH3PXD2A (ENSONIG00000008928)	stn1 (ENSONIG00000008926)	slkb (ENSONIG00000008924)	ENSONIG00000029619	ENSONIG00000038105	ENSONIG00000038608	ENSONIG00000006729	ENSONIG00000006725	mtmr7b (ENSONIG00000006726)	ENSONIG00000034664
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000164415	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00860000134050	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
Burton s mouthbrooder	MODERN SPECIES	297	ENSHBUG00000001362	ccr7 (ENSHBUG00000001358)	ENSHBUG00000001355	KRT222 (ENSHBUG00000001354)	krt97 (ENSHBUG00000001352)	RIMS1 (ENSHBUG00000001343)	ENSHBUG00000001329	EEF1A1 (ENSHBUG00000001322)	ENSHBUG00000001317	RIN2 (ENSHBUG00000001311)	SLC24A3 (ENSHBUG00000001307)	dtd1 (ENSHBUG00000001306)	ENSHBUG00000001301	SMIM26 (ENSHBUG00000001299)	ENSHBUG00000001294	RPS6KB2 (ENSHBUG00000001281) #22	ENSHBUG00000001275	ENSHBUG00000001272	ENSHBUG00000001262	neurl1aa (ENSHBUG00000001254)	SH3PXD2A (ENSHBUG00000001248)	stn1 (ENSHBUG00000001245)	slkb (ENSHBUG00000001244)	ENSHBUG00000001243
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00860000134050	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b
P. nyererei	MODERN SPECIES	466	SMARCE1 (ENSPNYG00000005893)	ccr7 (ENSPNYG00000005879)	TNS4 (ENSPNYG00000005850)	KRT222 (ENSPNYG00000005823)	krt97 (ENSPNYG00000005805)	RIMS1 (ENSPNYG00000005657)	ENSPNYG00000005614	EEF1A1 (ENSPNYG00000005593)	ENSPNYG00000005450	RIN2 (ENSPNYG00000005375)	SLC24A3 (ENSPNYG00000005329)	dtd1 (ENSPNYG00000005312)	ENSPNYG00000005292	SMIM26 (ENSPNYG00000005283)	ENSPNYG00000005245	RPS6KB2 (ENSPNYG00000005173) #22	ENSPNYG00000005158	ENSPNYG00000005082	ENSPNYG00000005052
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000159647	ENSGT00390000003628.a.a	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000160142	ENSGT00940000159655	ENSGT00950000182969.B.c.a.b	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.j.c.a	ENSGT01100000263529.a.a.a.b.b	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT01040000240400.c.a.b.a.b.a.b.a	ENSGT00940000157122.b.b	ENSGT00940000155062.a #22	ENSGT00990000204664.a	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT01040000240400.c.a.b.a.b.a.b.b	ENSGT00940000177734	ENSGT00990000203954.a	ENSGT00730000111912.A.b.d.b	ENSGT00940000175362	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a.a
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005012542	ccr7 (ENSMZEG00005012551)	ENSMZEG00005012559	KRT222 (ENSMZEG00005012564)	krt97 (ENSMZEG00005012578)	RIMS1 (ENSMZEG00005012628)	ENSMZEG00005012772	EEF1A1 (ENSMZEG00005012825)	ENSMZEG00005012852	ENSMZEG00005012864	RIN2 (ENSMZEG00005012875)	SLC24A3 (ENSMZEG00005012883)	dtd1 (ENSMZEG00005012906)	ENSMZEG00005012913	ENSMZEG00005012931	RPS6KB2 (ENSMZEG00005012978) #22	ENSMZEG00005013004	ENSMZEG00005013019	ENSMZEG00005013059	neurl1aa (ENSMZEG00005013097)	SH3PXD2A (ENSMZEG00005013142)	stn1 (ENSMZEG00005013232)	slkb (ENSMZEG00005013258)	ENSMZEG00005013301	ENSMZEG00005013308	ENSMZEG00005013314	ENSMZEG00005013324	ENSMZEG00005013335	ENSMZEG00005013365	ENSMZEG00005013373	ENSMZEG00005013379
Eastern happy	MODERN SPECIES	18	ccr7 (ENSACLG00000009137)	TNS4 (ENSACLG00000009099)	krt97 (ENSACLG00000009073)	KRT222 (ENSACLG00000009030)	RIMS1 (ENSACLG00000008035)	ENSACLG00000008010	ENSACLG00000007969	EEF1A1 (ENSACLG00000007936)	ENSACLG00000007923	RIN2 (ENSACLG00000007912)	SLC24A3 (ENSACLG00000007881)	dtd1 (ENSACLG00000007875)	ENSACLG00000007869	ENSACLG00000007831	ENSACLG00000007825	RPS6KB2 (ENSACLG00000007792) #22	ENSACLG00000007591	ENSACLG00000007497	ENSACLG00000006749	ENSACLG00000006413	ENSACLG00000006294	ENSACLG00000006272	neurl1aa (ENSACLG00000006223)	SH3PXD2A (ENSACLG00000005614)	stn1 (ENSACLG00000005574)	slkb (ENSACLG00000005534)	ENSACLG00000005528	ENSACLG00000005526	ENSACLG00000005524	ENSACLG00000005516	ENSACLG00000005509
Lyretail cichlid	MODERN SPECIES	355	ENSNBRG00000016940	ENSNBRG00000016920	ccr7 (ENSNBRG00000016910)	KRT222 (ENSNBRG00000016891)	krt97 (ENSNBRG00000016868)	ENSNBRG00000016853	ENSNBRG00000016819	ENSNBRG00000016788	ENSNBRG00000016770	ENSNBRG00000016710	RIN2 (ENSNBRG00000016691)	SLC24A3 (ENSNBRG00000016662)	dtd1 (ENSNBRG00000016635)	ENSNBRG00000016612	ENSNBRG00000016601	ENSNBRG00000016589 #22	ENSNBRG00000016576	ENSNBRG00000016529	ENSNBRG00000016466	neurl1aa (ENSNBRG00000016439)	SH3PXD2A (ENSNBRG00000016394)	slkb (ENSNBRG00000016350)	ENSNBRG00000016334
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005017502	CREBBP (ENSMMDG00005017595)	ADCY9 (ENSMMDG00005019835)	SRL (ENSMMDG00005019838)	TFAP4 (ENSMMDG00005019842)	GLIS2 (ENSMMDG00005019846)	ENSMMDG00005019847	ENSMMDG00005019848	ENSMMDG00005019850	ENSMMDG00005019851	vasna (ENSMMDG00005019853)	dnaja3b (ENSMMDG00005019859)	pdgfaa (ENSMMDG00005019975)	ENSMMDG00005019976	ENSMMDG00005019978	RPS6KB2 (ENSMMDG00005019990) #22	ENSMMDG00005020399	ENSMMDG00005020405	ENSMMDG00005020408	ENSMMDG00005020410	ENSMMDG00005020412	ENSMMDG00005020414	ENSMMDG00005020417	ENSMMDG00005020432	ddt (ENSMMDG00005020509)	chchd10 (ENSMMDG00005020510)	vps37c (ENSMMDG00005020514)	ENSMMDG00005020517	ENSMMDG00005020519	TCIRG1 (ENSMMDG00005020531)	stx3a (ENSMMDG00005020547)
Cod	MODERN SPECIES	16	ENSGMOG00000014509	ENSGMOG00000004167	ENSGMOG00000023130	ENSGMOG00000022708	ENSGMOG00000012831	ENSGMOG00000023089	ENSGMOG00000034630	ENSGMOG00000023667	ENSGMOG00000030016	ENSGMOG00000024977	ENSGMOG00000033724	ENSGMOG00000032370	ENSGMOG00000035513	ENSGMOG00000030624	ENSGMOG00000007168	ENSGMOG00000000851 #22	ENSGMOG00000025010	ENSGMOG00000015347	ENSGMOG00000017694	ENSGMOG00000029935	ENSGMOG00000030257	ENSGMOG00000017627	ENSGMOG00000017601	ENDOV (ENSGMOG00000017580)	ENSGMOG00000008585	RPTOR (ENSGMOG00000013162)	ENSGMOG00000022507	ENSGMOG00000013136	ENSGMOG00000013131	ANAPC11 (ENSGMOG00000031405)	ENSGMOG00000024527
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT01070000253822.D.a.h.b	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334 #31	ENSGT00390000001289.a #29	ENSGT00390000011766 #28	ENSGT00940000159681	ENSGT00940000166345	ENSGT00940000159796.a.a #32	ENSGT00440000033329.a.a.b	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01100000263527.b.b.a.a.b	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00390000015948.a	ENSGT00390000017452	ENSGT00940000160184.c.b	ENSGT00530000063713.b.a	ENSGT00940000159443	ENSGT00940000157511	ENSGT00940000156223	ENSGT00950000182934.a.a	ENSGT00940000160795	ENSGT01030000234543.A.a.h	ENSGT00940000161705	ENSGT01030000234543.A.a.g.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	66	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #32	ENSGT00440000033329.a.a.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a	ENSGT01050000244806.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #32	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a	ENSGT01030000234601.o	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a
Salmo	ANCESTRAL SPECIES	59	ENSGT00940000156393.a.b.b	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.s.a #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.d #32	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b.a	ENSGT01050000244806.a.a.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a.a	ENSGT01030000234601.o.h	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a.b	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f
River trout	MODERN SPECIES	33	ENSSTUG00000012958	ENSSTUG00000012974	ankrd49 (ENSSTUG00000012977)	GPR83 (ENSSTUG00000012980)	ENSSTUG00000012990	ENSSTUG00000013101	ENSSTUG00000013138	cdk2ap2 (ENSSTUG00000013144) #31	aip (ENSSTUG00000013160) #29	tmem134 (ENSSTUG00000013182) #28	serping1 (ENSSTUG00000013203)	doc2d (ENSSTUG00000013241)	ENSSTUG00000013309 #32	ENSSTUG00000013327	ENSSTUG00000013340	RPS6KB2 (ENSSTUG00000013358) #22	ENSSTUG00000013851	ENSSTUG00000013860	ENSSTUG00000013888	ENSSTUG00000013904	ENSSTUG00000013915	ENSSTUG00000013947	ENSSTUG00000013985	ENSSTUG00000014010	ENSSTUG00000014029	ENSSTUG00000014077	ENSSTUG00000014088	ENSSTUG00000014094	ENSSTUG00000014104	ENSSTUG00000014111	ENSSTUG00000014116
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000094036	ENSSSAG00000096879	ENSSSAG00000093695	ENSSSAG00000090418	ENSSSAG00000118802	ENSSSAG00000063815	ENSSSAG00000063865 #31	ENSSSAG00000086675	aip (ENSSSAG00000063862) #29	ENSSSAG00000063873 #28	serping1 (ENSSSAG00000041306)	doc2d (ENSSSAG00000041354)	ENSSSAG00000041457 #32	ENSSSAG00000085583	ENSSSAG00000063939	ENSSSAG00000063963 #22	ENSSSAG00000093559	ENSSSAG00000097384	ENSSSAG00000015333	ENSSSAG00000106001	ENSSSAG00000114375	ENSSSAG00000105041	ENSSSAG00000064183	ENSSSAG00000103202	ENSSSAG00000064234	ENSSSAG00000064248	ENSSSAG00000064252	ENSSSAG00000113252	ENSSSAG00000120994	ENSSSAG00000116704	ENSSSAG00000102982
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #32	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a	ENSGT00530000063713.b.a.o	ENSGT00940000159443.g.b	ENSGT00940000157511.l
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000010607	ENSOMYG00000010516	ENSOMYG00000010441	ENSOMYG00000010305	ENSOMYG00000010235 #31	ENSOMYG00000010208 #29	ENSOMYG00000059054 #28	serping1 (ENSOMYG00000010083)	serping1 (ENSOMYG00000076828)	doc2d (ENSOMYG00000010048)	ENSOMYG00000061139	ENSOMYG00000075864 #32	ENSOMYG00000059678	ENSOMYG00000010036	ENSOMYG00000074207	ENSOMYG00000009955 #22	ENSOMYG00000009605	ENSOMYG00000069994	ENSOMYG00000057181	ENSOMYG00000047849	ENSOMYG00000009468	ENSOMYG00000061115	ENSOMYG00000008924	ENSOMYG00000067411	ENSOMYG00000008886	ENSOMYG00000008860	ENSOMYG00000057422	ENSOMYG00000060091	ENSOMYG00000008780	ENSOMYG00000008772	ENSOMYG00000050027
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a.e #32	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.a.b.a	ENSGT01030000234540.B.b.w	ENSGT01030000234601.o.f	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b	ENSGT00390000015948.a.f	ENSGT00390000017452.a	ENSGT00940000160184.c.b.a	ENSGT00530000063713.b.a.o	ENSGT00940000159443.g.b	ENSGT00940000157511.l
Chinook salmon	MODERN SPECIES	27	ENSOTSG00005003103	ENSOTSG00005002803	ENSOTSG00005002792	ENSOTSG00005002683	ENSOTSG00005023496	cdk2ap2 (ENSOTSG00005023495) #31	aip (ENSOTSG00005023494) #29	tmem134 (ENSOTSG00005023492) #28	serping1 (ENSOTSG00005023487)	ENSOTSG00005023484	doc2d (ENSOTSG00005023475)	ENSOTSG00005023472 #32	ENSOTSG00005023470	ENSOTSG00005023471	ENSOTSG00005023469	RPS6KB2 (ENSOTSG00005023467) #22	ENSOTSG00005023464	ENSOTSG00005023440	ENSOTSG00005023433	ENSOTSG00005023430	ENSOTSG00005023428	ENSOTSG00005023427	ENSOTSG00005023424	ENSOTSG00005023420	ENSOTSG00005023417	ENSOTSG00005023411	ENSOTSG00005023407	ENSOTSG00005023406	patl1 (ENSOTSG00005023397)	pdcd4a (ENSOTSG00005021716)	mogs (ENSOTSG00005021715)
Coho salmon	MODERN SPECIES	3	ENSOKIG00005023805	ENSOKIG00005023786	ENSOKIG00005023774	ankrd49 (ENSOKIG00005023772)	GPR83 (ENSOKIG00005023758)	ENSOKIG00005023748	ENSOKIG00005023659	CDK2AP2 (ENSOKIG00005023637) #31	AIP (ENSOKIG00005023623) #29	ENSOKIG00005023608 #28	serping1 (ENSOKIG00005023514)	doc2d (ENSOKIG00005023418)	ENSOKIG00005023395 #32	ENSOKIG00005023381	ENSOKIG00005023373	RPS6KB2 (ENSOKIG00005023179) #22	ENSOKIG00005023150	ENSOKIG00005023132	ENSOKIG00005023106	ENSOKIG00005023026	ENSOKIG00005023011	ENSOKIG00005023006	ENSOKIG00005022995	ENSOKIG00005022974	ENSOKIG00005022956	ENSOKIG00005022884	ENSOKIG00005022778	ENSOKIG00005022742	ENSOKIG00005022700	ENSOKIG00005022641	ENSOKIG00005022613
Huchen	MODERN SPECIES	2947															ENSHHUG00000044871	RPS6KB2 (ENSHHUG00000044876) #22	ENSHHUG00000044885	ENSHHUG00000044904	ENSHHUG00000044910	ENSHHUG00000044914
Salmoninae	ANCESTRAL SPECIES	66	ENSGT01070000253822.D.a.h.b.a	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT01070000253822.D.b.v.b	ENSGT01070000253822.G	ENSGT00390000019377.a.a.b.j	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #32	ENSGT00440000033329.a.a.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a	ENSGT01050000244806.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00540000073610.A.c	ENSGT00390000003919	ENSGT00940000154336.pd.a	ENSGT01040000240400.d	ENSGT01070000253822.F	ENSGT01070000253822.D.b.v.a.b	ENSGT00940000180384	ENSGT01070000253822.D.b.v.a.a	ENSGT00940000160334.t #31	ENSGT00390000001289.a.h #29	ENSGT00390000011766.e #28	ENSGT00940000159681.f.b.a.a	ENSGT00940000166345.i	ENSGT00940000159796.a.a #32	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00440000033329.a.a.b.m.a	ENSGT00940000180362	ENSGT00940000155062.a.m #22	ENSGT01050000244806.a.a.a.b	ENSGT01050000244806.a.a.a.a.b	ENSGT00980000198730.a.b	ENSGT01050000244806.a.a.b.a	ENSGT00980000198730.b.b	ENSGT01030000234540.B.b	ENSGT00980000198730.b.a	ENSGT01030000234601.o	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.a	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.b.i.b	ENSGT00730000111690.B.g.d	ENSGT00520000055649.a.b
Salmo	ANCESTRAL SPECIES	82	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000172609	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #31	ENSGT00390000001289.a.g #29	ENSGT00390000011766.f #28	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.c #32	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00520000055649.a.a	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.h	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT01030000234543.A.a.h.a.a	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.b.a.b	ENSGT00940000156351.l.b	ENSGT00940000156660.d	ENSGT00390000013285.g.e
River trout	MODERN SPECIES	2	ACY3 (ENSSTUG00000031191)	cldnd1b (ENSSTUG00000031183)	ENSSTUG00000031177	ENSSTUG00000031173	ENSSTUG00000031155	ENSSTUG00000031149	ENSSTUG00000031142	GPR83 (ENSSTUG00000031138)	cdk2ap2 (ENSSTUG00000031121) #31	aip (ENSSTUG00000031104) #29	tmem134 (ENSSTUG00000031098) #28	serping1 (ENSSTUG00000031094)	doc2d (ENSSTUG00000031080)	ENSSTUG00000047334 #32	ENSSTUG00000047328	RPS6KB2 (ENSSTUG00000047181) #22	ENSSTUG00000047168	ENSSTUG00000047161	ENSSTUG00000047157	patl1 (ENSSTUG00000047084)	ENSSTUG00000047081	pdcd4a (ENSSTUG00000046821)	mogs (ENSSTUG00000046788)	FBXO41 (ENSSTUG00000046742)	ENSSTUG00000046726	rnf24 (ENSSTUG00000046711)	smox (ENSSTUG00000046704)	ENSSTUG00000046698	ADRA1D (ENSSTUG00000046685)	CTNNA2 (ENSSTUG00000046678)	LRRTM1 (ENSSTUG00000046676)
Atlantic salmon	MODERN SPECIES	27	tacr3l (ENSSSAG00000095583)	ENSSSAG00000041089	cldnd1b (ENSSSAG00000089615)	ENSSSAG00000102183	ENSSSAG00000041120	ENSSSAG00000041148	ENSSSAG00000041156	ENSSSAG00000106519	ENSSSAG00000041260 #31	ENSSSAG00000041284 #29	ENSSSAG00000041290 #28	serping1 (ENSSSAG00000063885)	doc2d (ENSSSAG00000063929)	ENSSSAG00000100733 #32	ENSSSAG00000041511	ENSSSAG00000041617 #22	ENSSSAG00000042856	ENSSSAG00000043053	mogs (ENSSSAG00000064563)	ENSSSAG00000046984	ENSSSAG00000047010	ENSSSAG00000105176	RNF24 (ENSSSAG00000095342)	smox (ENSSSAG00000064759)	ENSSSAG00000007913	ADRA1D (ENSSSAG00000007918)	LRRTM1 (ENSSSAG00000083145)	ENSSSAG00000008013	suclg1 (ENSSSAG00000008139)	ENSSSAG00000103581	ENSSSAG00000008170
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #31	ENSGT00390000001289.a.g #29	ENSGT00390000011766.f #28	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #32	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT01030000234543.A.a.h.a.a	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.a	ENSGT00940000156351.l.b
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000067081	ENSOMYG00000070156	ENSOMYG00000058329	ENSOMYG00000010610	ENSOMYG00000064659	ENSOMYG00000072004 #31	ENSOMYG00000011672 #29	ENSOMYG00000011651 #28	ENSOMYG00000059190	serping1 (ENSOMYG00000011625)	doc2d (ENSOMYG00000011603)	ENSOMYG00000077883 #32	ENSOMYG00000055206	ENSOMYG00000007521	ENSOMYG00000061229	ENSOMYG00000010122 #22	ENSOMYG00000016570	ENSOMYG00000016555	ENSOMYG00000015868	mogs (ENSOMYG00000015792)	ENSOMYG00000015762	rnf24 (ENSOMYG00000015737)	smox (ENSOMYG00000015547)	ENSOMYG00000015484	adra1b (ENSOMYG00000015475)	CTNNA2 (ENSOMYG00000015458)	ENSOMYG00000015450	ctnna2 (ENSOMYG00000015423)	suclg1 (ENSOMYG00000015366)	cisd2 (ENSOMYG00000015345)	ENSOMYG00000015313
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00980000201781	ENSGT00940000153745.b.e.a.d	ENSGT00390000001189.b.j.g	ENSGT00390000002596.b.k.b	ENSGT01000000214857.e	ENSGT00940000156393.a.b.a	ENSGT00540000073610.A.d	ENSGT00940000154336.pd.b	ENSGT00940000160334.s.b #31	ENSGT00390000001289.a.g #29	ENSGT00390000011766.f #28	ENSGT00940000159681.e	ENSGT00940000166345.j	ENSGT00940000159796.a.a.f #32	ENSGT00440000033329.a.a.b.m.b	ENSGT00940000155062.a.n #22	ENSGT00730000111690.B.g.c	ENSGT00520000055649.a.a	ENSGT00940000166931.e.b	ENSGT00390000015948.a.e	ENSGT00390000017452.b	ENSGT00940000160184.c.b.b	ENSGT00530000063713.b.a.p	ENSGT00940000159443.g.a	ENSGT00940000157511.k	ENSGT00950000182934.a.a.g	ENSGT00940000160795.c	ENSGT00940000161705.d	ENSGT01030000234543.A.a.g.a	ENSGT00940000156351.l.b	ENSGT00940000156660.d
Coho salmon	MODERN SPECIES	27	ENSOKIG00005016010	tacr3l (ENSOKIG00005016023)	ENSOKIG00005016065	ACY3 (ENSOKIG00005016070)	cldnd1b (ENSOKIG00005016083)	ENSOKIG00005016092	ENSOKIG00005016103	ENSOKIG00005016121	GPR83 (ENSOKIG00005016218)	cdk2ap2 (ENSOKIG00005016226) #31	aip (ENSOKIG00005016244) #29	tmem134 (ENSOKIG00005016256) #28	serping1 (ENSOKIG00005016270)	doc2d (ENSOKIG00005016308)	LONRF1 (ENSOKIG00005016341)	RPS6KB2 (ENSOKIG00005016392) #22	ENSOKIG00005017183	patl1 (ENSOKIG00005017198)	ENSOKIG00005017262	ENSOKIG00005017303	mogs (ENSOKIG00005017826)	FBXO41 (ENSOKIG00005017837)	rnf24 (ENSOKIG00005017879)	smox (ENSOKIG00005017892)	ENSOKIG00005025927	ADRA1D (ENSOKIG00005025944)	ctnna2 (ENSOKIG00005025961)	ENSOKIG00005025969	LRRTM1 (ENSOKIG00005025973)	ctnna2 (ENSOKIG00005026027)	ENSOKIG00005026919
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2	ccdc86 (ENSOTSG00005001805)	ACY3 (ENSOTSG00005001822)	tacr3l (ENSOTSG00005001838)	cldnd1b (ENSOTSG00005001844)	ENSOTSG00005001847	ENSOTSG00005001855	GPR83 (ENSOTSG00005001862)	cdk2ap2 (ENSOTSG00005001875) #31	aip (ENSOTSG00005001890) #29	tmem134 (ENSOTSG00005001894) #28	serping1 (ENSOTSG00005001901)	doc2d (ENSOTSG00005001907)	ENSOTSG00005001915 #32	ENSOTSG00005001919	ENSOTSG00005001924	RPS6KB2 (ENSOTSG00005001961) #22	patl1 (ENSOTSG00005003681)	pdcd4a (ENSOTSG00005003692)	ENSOTSG00005005496	ENSOTSG00005005497	FBXO41 (ENSOTSG00005005498)	rnf24 (ENSOTSG00005005499)	smox (ENSOTSG00005005501)	ENSOTSG00005005504	ADRA1D (ENSOTSG00005005506)	ctnna2 (ENSOTSG00005005511)	ENSOTSG00005005512	LRRTM1 (ENSOTSG00005005513)	ENSOTSG00005005514	ctnna2 (ENSOTSG00005005515)	suclg1 (ENSOTSG00005005666)
Chinook salmon	MODERN SPECIES	66	CACNA1B (ENSOTSG00005021787)	ehmt1b (ENSOTSG00005021006)	rtknb (ENSOTSG00005021005)	ENSOTSG00005021004	ENSOTSG00005021003	ENSOTSG00005021001	cntf (ENSOTSG00005021000)	GPR83 (ENSOTSG00005020999)	cdk2ap2 (ENSOTSG00005020998) #31	aip (ENSOTSG00005020997) #29	tmem134 (ENSOTSG00005020996) #28	serping1 (ENSOTSG00005020995)	doc2d (ENSOTSG00005020994)	ENSOTSG00005020993	ENSOTSG00005020992	RPS6KB2 (ENSOTSG00005020990) #22	patl1 (ENSOTSG00005020988)	pdcd4a (ENSOTSG00005019518)	ENSOTSG00005019515	ENSOTSG00005019514	FBXO41 (ENSOTSG00005019513)	rnf24 (ENSOTSG00005019512)	smox (ENSOTSG00005019511)	ENSOTSG00005019510	ADRA1D (ENSOTSG00005019507)	ctnna2 (ENSOTSG00005019506)	ENSOTSG00005019505	LRRTM1 (ENSOTSG00005019504)	ctnna2 (ENSOTSG00005019484)	suclg1 (ENSOTSG00005019483)	cisd2 (ENSOTSG00005019482)
Northern pike	MODERN SPECIES	24	ankrd49 (ENSELUG00000026478)	GPR83 (ENSELUG00000022975)	ENSELUG00000032300	ENSELUG00000023021	ENSELUG00000030691	ENSELUG00000028280	cdk2ap2 (ENSELUG00000030693) #31	aip (ENSELUG00000023123) #29	tmem134 (ENSELUG00000023207) #28	serping1 (ENSELUG00000023225)	doc2d (ENSELUG00000023240)	ENSELUG00000026595	CABP2 (ENSELUG00000028776) #32	LONRF1 (ENSELUG00000023387)	ENSELUG00000023310	RPS6KB2 (ENSELUG00000001422) #22	ENSELUG00000032247	ENSELUG00000023838	ENSELUG00000023812	ENSELUG00000023936	ENSELUG00000027687	ENSELUG00000023784	ENSELUG00000023987	ENSELUG00000024004	ENSELUG00000024089	ENSELUG00000024018	ENSELUG00000001008	ENSELUG00000026297	ENSELUG00000024061	ENSELUG00000016949	ENSELUG00000033667
Otomorpha	ANCESTRAL SPECIES	536															ENSGT00940000180362.b	ENSGT00940000155062.a #22	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B.f.b.a.a	ENSGT00980000199739
Clupeiformes	ANCESTRAL SPECIES	26	ENSGT00940000156393.a.b	ENSGT01000000214857	ENSGT00390000017281	ENSGT00950000182942.a.a	ENSGT00940000159063.f	ENSGT00940000173396	ENSGT01030000234601.q.a	ENSGT00940000153745.b.e.a	ENSGT00390000001189.b.j	ENSGT00390000002596.b	ENSGT00730000111690.B.f.b.b	ENSGT00940000156164	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00940000180362.b	ENSGT00940000155062.a #22	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT00940000158942.a	ENSGT00950000183012.A.b	ENSGT00510000052942	ENSGT00980000202422	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT00940000153662.A.f	ENSGT00950000182881.a.b.a.b.z.a	ENSGT00940000155484.b #13	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00390000003049.b.a	ENSGT00390000011272	ENSGT01020000230351.B.j.a	ENSGT00940000157117.k
Denticle herring	MODERN SPECIES	14	cdk2ap2 (ENSDCDG00000028719) #31	ENSDCDG00000028714	cntf (ENSDCDG00000028705)	ENSDCDG00000028701	ENSDCDG00000028689	ENSDCDG00000028687	ENSDCDG00000028684	glb1 (ENSDCDG00000027570)	ENSDCDG00000027557	ENSDCDG00000027556	tacr3l (ENSDCDG00000027552)	acy3.2 (ENSDCDG00000027548)	cldnd1b (ENSDCDG00000027546)	osbp (ENSDCDG00000027532)	patl1 (ENSDCDG00000027526)	RPS6KB2 (ENSDCDG00000027065) #22	ENSDCDG00000027041	ENSDCDG00000027036	ENSDCDG00000027019	ENSDCDG00000027011	vps37c (ENSDCDG00000027008)	tmem176 (ENSDCDG00000027004)	ENSDCDG00000027002	ENSDCDG00000026990	PRPF19 (ENSDCDG00000026988)	TCIRG1 (ENSDCDG00000026911)	kdm2aa (ENSDCDG00000026146) #13	stx3a (ENSDCDG00000026109)	ndufs8a (ENSDCDG00000026107)	TMEM187 (ENSDCDG00000026106)	p2rx3b (ENSDCDG00000026105)
Atlantic herring	MODERN SPECIES	14	dvl3a (ENSCHAG00000000950)	ap2m1a (ENSCHAG00000000899)	pcyt1aa (ENSCHAG00000000780)	SERP1 (ENSCHAG00000000757)	selenot1a (ENSCHAG00000000724)	DDR2 (ENSCHAG00000000563)	ENSCHAG00000017284	rgs5b (ENSCHAG00000017250)	ENSCHAG00000017225	ENSCHAG00000017213	NMUR1 (ENSCHAG00000016995)	cpdp (ENSCHAG00000016978)	ENSCHAG00000016918	med31 (ENSCHAG00000016908)	ENSCHAG00000016891	RPS6KB2 (ENSCHAG00000016541) #22	ENSCHAG00000016517	ENSCHAG00000016480	ENSCHAG00000016367	ENSCHAG00000016035	ENSCHAG00000015999	ENSCHAG00000015992	ENSCHAG00000015920	patl1 (ENSCHAG00000015834)	osbp (ENSCHAG00000015665)	ENSCHAG00000015655	ENSCHAG00000015639	ENSCHAG00000015606	ENSCHAG00000015589	ENSCHAG00000015553	cldnd1b (ENSCHAG00000015544)
Otophysi	ANCESTRAL SPECIES	577																ENSGT00940000155062.a #22	ENSGT00520000055649.a
Characiphysae	ANCESTRAL SPECIES	114	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b	ENSGT00940000155062.a #22	ENSGT00520000055649.a	ENSGT00940000153558	ENSGT00940000155007.n.b	ENSGT00390000009819.a.a	ENSGT00530000063926.a	ENSGT00940000165823	ENSGT00390000008711.h
Characiphysae_b	ANCESTRAL SPECIES	135	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b	ENSGT00940000155062.a #22
Characoidei	ANCESTRAL SPECIES	133	ENSGT00940000160795	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000156351	ENSGT00940000156660	ENSGT00390000013285.g	ENSGT00940000156721	ENSGT00940000153745.b.f	ENSGT00940000156074.a.b	ENSGT00980000203458	ENSGT00390000005736	ENSGT00740000117107	ENSGT00400000023138	ENSGT00990000208074	ENSGT00740000116854.b.a	ENSGT00940000155062.a #22
Red-bellied piranha	MODERN SPECIES	1084													ENSPNAG00000009315	ENSPNAG00000001309	ENSPNAG00000009286	RPS6KB2 (ENSPNAG00000009268) #22	ENSPNAG00000009210	ENSPNAG00000009193
Mexicana tetra	MODERN SPECIES	13	LRRTM1 (ENSAMXG00000025113)	ctnna2 (ENSAMXG00000018513)	suclg1 (ENSAMXG00000005265)	cisd2 (ENSAMXG00000042295)	ENSAMXG00000042540	bdh2 (ENSAMXG00000040462)	tacr3a (ENSAMXG00000005217)	cnga1a (ENSAMXG00000043371)	enam (ENSAMXG00000030244)	scpp5 (ENSAMXG00000037331)	scpp7 (ENSAMXG00000033970)	odam (ENSAMXG00000037617)	scpp9 (ENSAMXG00000039551)	ENSAMXG00000035031	ENSAMXG00000038073	RPS6KB2 (ENSAMXG00000004056) #22	hpf1 (ENSAMXG00000034213)	ENSAMXG00000030810	ENSAMXG00000030369	ENSAMXG00000030781	ENSAMXG00000039785	camk2d2 (ENSAMXG00000004004)	ENSAMXG00000035755	ENSAMXG00000038972	ENSAMXG00000032032	crmp1 (ENSAMXG00000003990)	WFS1 (ENSAMXG00000003978)
Electric eel	MODERN SPECIES	1354														ENSEEEG00000018145	ENSEEEG00000018144	RPS6KB2 (ENSEEEG00000018066) #22
Channel catfish	MODERN SPECIES	21	suclg1 (ENSIPUG00000015947)	ENSIPUG00000015955	ENSIPUG00000015967	cisd2 (ENSIPUG00000015976)	ENSIPUG00000016001	ENSIPUG00000016037	ENSIPUG00000016044	ENSIPUG00000016048	ENSIPUG00000016061	ENSIPUG00000016105	bdh2 (ENSIPUG00000016147)	tacr3 (ENSIPUG00000016246)	cnga1a (ENSIPUG00000016281)	odam (ENSIPUG00000016299)	ENSIPUG00000016313	RPS6KB2 (ENSIPUG00000016325) #22	ENSIPUG00000016365	ENSIPUG00000016386	ENSIPUG00000016394	ENSIPUG00000016420	ENSIPUG00000016437	ENSIPUG00000016498	ENSIPUG00000016525	ENSIPUG00000016557	ENSIPUG00000016592	patl1 (ENSIPUG00000016627)	DNAJA1 (ENSIPUG00000016707)	ENSIPUG00000016741	rps6 (ENSIPUG00000016770)	ACER2 (ENSIPUG00000016812)	A33 (ENSIPUG00000016835)
Osteoglossiformes	ANCESTRAL SPECIES	114														ENSGT01030000235063.a	ENSGT00940000180362	ENSGT00940000155062.a #22	ENSGT01050000244806.a.a	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00730000111690.B	ENSGT00980000199739.a	ENSGT01030000234601	ENSGT00390000001189.b.i.i.a	ENSGT00390000002596.b	ENSGT00390000017281	ENSGT01000000214857	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00940000160334.m #31	ENSGT00390000001289.a #29
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015025711	ENSSFOG00015028148	ENSSFOG00015028400	ENSSFOG00015007597	hpf1 (ENSSFOG00015007682)	ANK2 (ENSSFOG00015028530)	camk2d1 (ENSSFOG00015007879)	chic2 (ENSSFOG00015007962)	WFS1 (ENSSFOG00015008008)	exoc1l (ENSSFOG00015008063)	ENSSFOG00015010021	dtx4a (ENSSFOG00015025212)	ENSSFOG00015009984	ENSSFOG00015009970	ENSSFOG00015009866	RPS6KB2 (ENSSFOG00015009820) #22	ENSSFOG00015009779	ENSSFOG00015032046	ENSSFOG00015029325	ENSSFOG00015026904	ENSSFOG00015009667	ENSSFOG00015024892	ENSSFOG00015009654	patl1 (ENSSFOG00015009614)	osbp (ENSSFOG00015009541)	ENSSFOG00015009499	ENSSFOG00015028596	ENSSFOG00015009467	ACY3 (ENSSFOG00015032855)	cldnd1b (ENSSFOG00015009451)	ENSSFOG00015009402
P. kingsleyae	MODERN SPECIES	693												dtx4a (ENSPKIG00000014683)	ENSPKIG00000014604	ENSPKIG00000014587	ENSPKIG00000014571	RPS6KB2 (ENSPKIG00000014443) #22	ENSPKIG00000014333
Spotted gar	MODERN SPECIES	675	dsc2l (ENSLOCG00000006830)	ENSLOCG00000006871 #27	aip (ENSLOCG00000006893) #29	ENSLOCG00000006911	ENSLOCG00000006926	ENSLOCG00000006939	doc2d (ENSLOCG00000006958)	ENSLOCG00000006991	ENSLOCG00000007003	ENSLOCG00000007012	ZFP91 (ENSLOCG00000007033)	ENSLOCG00000007044	ENSLOCG00000007057	si:dkey-9i23.5 (ENSLOCG00000007066)	ENSLOCG00000007079 #24	ENSLOCG00000007090 #22	ENSLOCG00000017818	ENSLOCG00000007110	dtx4a (ENSLOCG00000007126)	ENSLOCG00000007143	ENSLOCG00000017819	EPC1 (ENSLOCG00000007160)	KIF5B (ENSLOCG00000007172)	arhgap12b (ENSLOCG00000007199)	zeb1b (ENSLOCG00000007239)	znf438 (ENSLOCG00000007254)	SVIL (ENSLOCG00000007278)	ENSLOCG00000007305	ENSLOCG00000007332	MTPAP (ENSLOCG00000007357)	MAP3K8 (ENSLOCG00000007364)
Reedfish	MODERN SPECIES	1	ENSECRG00000010610	ENSECRG00000010602	ENSECRG00000010591	ENSECRG00000010586	ENSECRG00000010580	ENSECRG00000010572	ENSECRG00000010568	MPEG1 (ENSECRG00000010559)	ENSECRG00000010548	ENSECRG00000010541	ENSECRG00000010535	ENSECRG00000010529	ENSECRG00000010525	ENSECRG00000010523	ENSECRG00000010517	RPS6KB2 (ENSECRG00000010507) #22	ENSECRG00000010486 #24	aldob (ENSECRG00000010463)	pgap4 (ENSECRG00000010458)	rnf20 (ENSECRG00000010449)	ENSECRG00000010440	ENSECRG00000010435	ENSECRG00000010427	VPS37C (ENSECRG00000010424)	ENSECRG00000010420	ENSECRG00000010416	ENSECRG00000010409	ENSECRG00000010405	ENSECRG00000010400	ENSECRG00000010391	ENSECRG00000010380
Gnathostomata	ANCESTRAL SPECIES	197				ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123	ENSGT00390000009588	ENSGT00510000046704.a	ENSGT00390000018533	ENSGT00940000156673	ENSGT00940000164942	ENSGT00940000158902	ENSGT00390000015991	ENSGT00390000007230	ENSGT00940000155062.b ##22	ENSGT00940000156740
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Lesser Egyptian jerboa	MODERN SPECIES	112				Ppm1e (ENSJJAG00000015240)	Trim37 (ENSJJAG00000011870)	ENSJJAG00000012824	Smg8 (ENSJJAG00000000434)	Gdpd1 (ENSJJAG00000011630)	Ypel2 (ENSJJAG00000011970)	Dhx40 (ENSJJAG00000010433)	Cltc (ENSJJAG00000015375)	ENSJJAG00000019588	Vmp1 (ENSJJAG00000011537)	Tubd1 (ENSJJAG00000014684)	ENSJJAG00000008914	ENSJJAG00000010455 ##22	Rnft1 (ENSJJAG00000019680)	Med13 (ENSJJAG00000009968)	Ints2 (ENSJJAG00000003384)	Brip1 (ENSJJAG00000016463)	Tbx4 (ENSJJAG00000015943)	Tbx2 (ENSJJAG00000016726)	Bcas3 (ENSJJAG00000018677)	Ppm1d (ENSJJAG00000024338)	Appbp2 (ENSJJAG00000018940)	Chct1 (ENSJJAG00000008525)	Usp32 (ENSJJAG00000013153)	Car4 (ENSJJAG00000024230)	Znhit3 (ENSJJAG00000021789)	Myo19 (ENSJJAG00000018388)	Ggnbp2 (ENSJJAG00000020699)
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000042213	ENSHGLG00000049918	ENSHGLG00000002212	ENSHGLG00000007144	ENSHGLG00000006403	ENSHGLG00000005743	ENSHGLG00000010213	ENSHGLG00000016657	ENSHGLG00000041627	NPVF (ENSHGLG00000017985)	NFE2L3 (ENSHGLG00000017200)	ENSHGLG00000015396	ENSHGLG00000014772	ENSHGLG00000050650	SKAP2 (ENSHGLG00000042970)	ENSHGLG00000045030 ##22	ENSHGLG00000036434	HOXA1 (ENSHGLG00000018117)	HOXA2 (ENSHGLG00000017804)	HOXA3 (ENSHGLG00000046038)	HOXA4 (ENSHGLG00000048807)	HOXA5 (ENSHGLG00000016863)	ENSHGLG00000043027	HOXA9 (ENSHGLG00000045326)	HOXA10 (ENSHGLG00000050027)	HOXA11 (ENSHGLG00000009266)	HOXA13 (ENSHGLG00000039960)	EVX1 (ENSHGLG00000005868)	HIBADH (ENSHGLG00000005354)	ENSHGLG00000047390	ENSHGLG00000016256
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Mustelinae	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
American mink	MODERN SPECIES	37			ENSNVIG00000002716	ENSNVIG00000002702	PRR11 (ENSNVIG00000002688)	SMG8 (ENSNVIG00000002669)	GDPD1 (ENSNVIG00000002603)	YPEL2 (ENSNVIG00000002566)	ENSNVIG00000002558	DHX40 (ENSNVIG00000002198)	CLTC (ENSNVIG00000002049)	PTH2 (ENSNVIG00000002036)	VMP1 (ENSNVIG00000002020)	TUBD1 (ENSNVIG00000001981)	ENSNVIG00000001967	ENSNVIG00000001957 ##22	ENSNVIG00000001943	RNFT1 (ENSNVIG00000001927)	MED13 (ENSNVIG00000001880)	INTS2 (ENSNVIG00000001784)	BRIP1 (ENSNVIG00000001747)	ENSNVIG00000001733	TBX4 (ENSNVIG00000001674)	TBX2 (ENSNVIG00000001656)	BCAS3 (ENSNVIG00000001168)	PPM1D (ENSNVIG00000001090)	ENSNVIG00000001066	APBP2 (ENSNVIG00000001010)	CHCT1 (ENSNVIG00000000985)	ENSNVIG00000000918	CA4 (ENSNVIG00000000902)
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Hyrax	MODERN SPECIES	825																ENSPCAG00000015670 ##22	RNFT1 (ENSPCAG00000015742)
Sauria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000155062.b ##22
Turkey	MODERN SPECIES	13	ENSMGAG00000007761	ENSMGAG00000007837	ENSMGAG00000007687	CHCT1 (ENSMGAG00000007719)	ENSMGAG00000019392	ENSMGAG00000007680	ENSMGAG00000021136	ENSMGAG00000021546	ENSMGAG00000018635	ENSMGAG00000007617	ENSMGAG00000007537	ENSMGAG00000007574	ENSMGAG00000007481	ENSMGAG00000021070	ENSMGAG00000007474	ENSMGAG00000007416 ##22	ENSMGAG00000007384	VMP1 (ENSMGAG00000007355)	ENSMGAG00000007276	ENSMGAG00000015485	ENSMGAG00000020743	ENSMGAG00000007238	ENSMGAG00000007232	ENSMGAG00000007212	ENSMGAG00000007204	ENSMGAG00000007186	SKA2 (ENSMGAG00000007183)	ENSMGAG00000007109	ENSMGAG00000007115	RAD51C (ENSMGAG00000007095)	ENSMGAG00000022814
Coelacanth	MODERN SPECIES	228			RAD51C (ENSLACG00000000179)	PPM1E (ENSLACG00000004046)	TRIM37 (ENSLACG00000004789)	ska2 (ENSLACG00000005730)	PRR11 (ENSLACG00000006191)	SMG8 (ENSLACG00000006505)	GDPD1 (ENSLACG00000006722)	YPEL2 (ENSLACG00000007336)	DHX40 (ENSLACG00000008892)	CLTC (ENSLACG00000009711)	PTRH2 (ENSLACG00000010258)	VMP1 (ENSLACG00000010438)	TUBD1 (ENSLACG00000011751)	rps6kb1b (ENSLACG00000011872) ##22	RNFT1 (ENSLACG00000012165)	ENSLACG00000012334	MED13 (ENSLACG00000012774)	INTS2 (ENSLACG00000013445)	BRIP1 (ENSLACG00000013747)	TBX4 (ENSLACG00000014713)	TBX2 (ENSLACG00000015364)	BCAS3 (ENSLACG00000016293)	PPM1D (ENSLACG00000016794)	APPBP2 (ENSLACG00000016848)	ENSLACG00000016966	CA4 (ENSLACG00000017298)	ENSLACG00000017393	ZNHIT3 (ENSLACG00000017408)	MYO19 (ENSLACG00000017419)
Actinopterygii	ANCESTRAL SPECIES	75					ENSGT00940000165416	ENSGT00940000156014	ENSGT00940000154823	ENSGT00940000176149	ENSGT00390000017214	ENSGT00390000009061	ENSGT00940000158902	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230	ENSGT00940000157069	ENSGT00940000155062.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00740000117073	ENSGT00390000013680.b	ENSGT00390000011888	ENSGT00940000161188	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000001189.a	ENSGT00940000153491.b.b.a	ENSGT00990000205129	ENSGT00390000016067	ENSGT00940000153592.B.a	ENSGT01030000234555.a.a.a.c.a
Neopterygii	ANCESTRAL SPECIES	76				ENSGT00940000157837	ENSGT00390000014001	ENSGT00390000018199.b	ENSGT00390000012785	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00390000015991	ENSGT00390000007230	ENSGT00940000157069	ENSGT00940000155062.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00740000117073	ENSGT00390000013680.b	ENSGT00390000011888	ENSGT00390000015077	ENSGT00940000161188	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00390000001189.a	ENSGT00940000153491.b.b.a	ENSGT00990000205129	ENSGT00390000016067	ENSGT00940000153592.B.a	ENSGT01030000234555.a.a.a.c.a
Osteoglossocephalai	ANCESTRAL SPECIES	307						ENSGT01020000230351.E.c	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000154203	ENSGT00390000013680.b.b	ENSGT00940000155062.b ##22	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b
Osteoglossiformes	ANCESTRAL SPECIES	31					ENSGT00940000157044.t	ENSGT00840000129887.h	ENSGT00560000077232.B.h	ENSGT00530000063811.A.a.b	ENSGT01020000230351.E.c	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00940000157069	ENSGT00940000155062.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028.n.a	ENSGT00940000179338	ENSGT00940000159975	ENSGT00530000063947.C.d
P. kingsleyae	MODERN SPECIES	28	pigl (ENSPKIG00000019311)	ncor1 (ENSPKIG00000019364)	zswim7 (ENSPKIG00000019504)	adora2b (ENSPKIG00000019530)	ENSPKIG00000019548	TIMM22 (ENSPKIG00000019575)	abr (ENSPKIG00000019607)	aspa (ENSPKIG00000019648)	zgc:85789 (ENSPKIG00000019680)	AKAP10 (ENSPKIG00000019721)	ENSPKIG00000019759	ENSPKIG00000019766	cltca (ENSPKIG00000019841)	ptrh2 (ENSPKIG00000019982)	VMP1 (ENSPKIG00000020009)	rps6kb1b (ENSPKIG00000020084) ##22	rnft1 (ENSPKIG00000020150)	med13a (ENSPKIG00000020202)	ints2 (ENSPKIG00000020268)	AUTS2 (ENSPKIG00000020360)	ENSPKIG00000020479	cxadr (ENSPKIG00000020497)	btg3 (ENSPKIG00000020578)	zgc:110006 (ENSPKIG00000020592)	ripk4 (ENSPKIG00000020611)	PRDM15 (ENSPKIG00000020637)	C2CD2 (ENSPKIG00000020677)	atg101 (ENSPKIG00000020716)	ZBTB21 (ENSPKIG00000020728)	ENSPKIG00000020739	ENSPKIG00000020754
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	19	pigl (ENSSFOG00015033284)	ncor1 (ENSSFOG00015015165)	zswim7 (ENSSFOG00015015135)	adora2b (ENSSFOG00015015124)	SPECC1 (ENSSFOG00015015085)	TIMM22 (ENSSFOG00015015062)	abr (ENSSFOG00015014912)	aspa (ENSSFOG00015014886)	zgc:85789 (ENSSFOG00015014869)	AKAP10 (ENSSFOG00015014821)	ENSSFOG00015014806	ENSSFOG00015014797	cltca (ENSSFOG00015014567)	ptrh2 (ENSSFOG00015014530)	VMP1 (ENSSFOG00015014460)	ENSSFOG00015014392 ##22	rnft1 (ENSSFOG00015014371)	med13a (ENSSFOG00015014324)	ints2 (ENSSFOG00015014282)	AUTS2 (ENSSFOG00015014144)	cxadr (ENSSFOG00015029571)	btg3 (ENSSFOG00015014103)	btg3 (ENSSFOG00015014091)	zgc:110006 (ENSSFOG00015025769)	ripk4 (ENSSFOG00015014053)	PRDM15 (ENSSFOG00015013930)	C2CD2 (ENSSFOG00015013901)	atg101 (ENSSFOG00015026818)	ZBTB21 (ENSSFOG00015028888)	ENSSFOG00015025291	ENSSFOG00015013853
Asian bonytongue	MODERN SPECIES	1	robo2 (ENSSFOG00015003444)	ENSSFOG00015003369	ENSSFOG00015003337	stim1a (ENSSFOG00015003330)	rhogb (ENSSFOG00015029302)	ENSSFOG00015028915	or71aq1 (ENSSFOG00015003193)	or71ar1 (ENSSFOG00015003144)	ENSSFOG00015003134	ENSSFOG00015003120	or40a1 (ENSSFOG00015003063)	DHX40 (ENSSFOG00015003020)	cltcb (ENSSFOG00015002844)	ENSSFOG00015025392	tubd1 (ENSSFOG00015002798)	rps6kb1b (ENSSFOG00015002745) ##22	MED13 (ENSSFOG00015002623)	zgc:112083 (ENSSFOG00015031442)	ZBTB21 (ENSSFOG00015032112)	ENSSFOG00015025900	zgc:112083 (ENSSFOG00015002582)	ZBTB21 (ENSSFOG00015025479)	ENSSFOG00015024974	thap12b (ENSSFOG00015025519)	dner (ENSSFOG00015002483)	pid1 (ENSSFOG00015029680)	ENSSFOG00015033161	ENSSFOG00015017017	ENSSFOG00015027061	ENSSFOG00015026160	ENSSFOG00015032162
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155062.b.c ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155062.b.c ##22
Otophysi	ANCESTRAL SPECIES	166											ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.c ##22	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00390000013680.b.b	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00940000158249.q.b	ENSGT00390000015119	ENSGT00950000182834.A.a.b.d	ENSGT01030000234773	ENSGT01100000263938	ENSGT00390000017253	ENSGT00390000017147	ENSGT00390000000417.a.a.b.a.a
Characiphysae	ANCESTRAL SPECIES	216											ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.c ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888
Characiphysae_b	ANCESTRAL SPECIES	171	ENSGT00950000182847.b.b.a.b.g.a.a.a.a	ENSGT00940000161369.B.b.b.r.a	ENSGT00950000182847.b.b.a.b.g.a.b	ENSGT00940000161369.B.b.b.r.b	ENSGT00390000004952.a.a	ENSGT00390000004952.b	ENSGT00940000156630	ENSGT00950000183120.j	ENSGT00390000002316	ENSGT00940000158706	ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.c ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888
Characoidei	ANCESTRAL SPECIES	202	ENSGT00950000182847.b.b.a.b.g.a.a.b.a	ENSGT00950000182847.b.b.a.b.g.a.a.a.a	ENSGT00940000161369.B.b.b.r.a	ENSGT00950000182847.b.b.a.b.g.a.b	ENSGT00940000161369.B.b.b.r.b	ENSGT00390000004952.b	ENSGT00940000156630	ENSGT00950000183120.j	ENSGT00390000002316	ENSGT00940000158706	ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.c ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888
Red-bellied piranha	MODERN SPECIES	299	ENSPNAG00000001622	ENSPNAG00000001632	ENSPNAG00000011255	ENSPNAG00000011274	ENSPNAG00000001650	UBL3 (ENSPNAG00000011303)	katnal1 (ENSPNAG00000011321)	hmgb1a (ENSPNAG00000011332)	uspl1 (ENSPNAG00000001686)	alox5ap (ENSPNAG00000006240)	btg3 (ENSPNAG00000011497)	cltca (ENSPNAG00000011593)	ENSPNAG00000001827	ptrh2 (ENSPNAG00000011617)	VMP1 (ENSPNAG00000011637)	ENSPNAG00000001850 ##22	rnft1 (ENSPNAG00000011664)	med13a (ENSPNAG00000011769)	ints2 (ENSPNAG00000011813)
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	162			ENSGT00940000165416	ENSGT00940000156014	ENSGT00560000077232.B.g.a	ENSGT00530000063811.A.a.b	ENSGT01020000230351.E.c	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000163253.a.b	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b	ENSGT00940000157408.a.b	ENSGT00940000156881.g	ENSGT00940000164443.a.a.b	ENSGT00940000156527.d	ENSGT00950000183068.a.b.d	ENSGT00940000166822	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.a	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00940000155457.a.b	ENSGT00940000157231.a.b	ENSGT00940000161544
Otomorpha	ANCESTRAL SPECIES	2	ENSGT00940000156673	ENSGT00940000159010	ENSGT00940000153594.d	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000163253.a.b	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00390000013680.b.b
Otophysi	ANCESTRAL SPECIES	53	ENSGT00940000159010.g.b	ENSGT00940000153594.d	ENSGT00530000063461.B	ENSGT00940000160233	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000161324	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00950000182856.b.c	ENSGT00940000155801.c	ENSGT00940000159642.f.a	ENSGT00940000167856.b	ENSGT00940000177557	ENSGT00940000168466	ENSGT00940000153695.A	ENSGT00530000063801.b.g	ENSGT00940000154904	ENSGT00940000162996	ENSGT00940000155231.a.a	ENSGT00390000017207.i.a	ENSGT00940000157434.c	ENSGT00950000182903.b.b.o.a	ENSGT00510000048581
Characiphysae	ANCESTRAL SPECIES	22	ENSGT00510000047059	ENSGT00390000007848.a.c	ENSGT00940000156673	ENSGT00940000159010.g.b	ENSGT00940000153594.d	ENSGT00530000063461.B	ENSGT00940000160233	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00950000182856.b.c	ENSGT00940000155801.c	ENSGT00940000159642.f.a	ENSGT00940000167856.b	ENSGT00940000177557	ENSGT00940000168466	ENSGT00940000153695.A	ENSGT00530000063801.b.g	ENSGT00940000155231.a.a	ENSGT00390000014712.a.a	ENSGT00390000013680.b.b	ENSGT00940000154823	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b
Channel catfish	MODERN SPECIES	8	gdpd1 (ENSIPUG00000016248)	ENSIPUG00000016220	hip1 (ENSIPUG00000016140)	clptm1 (ENSIPUG00000016096)	mos (ENSIPUG00000016091)	relb (ENSIPUG00000016024)	mrpl28 (ENSIPUG00000015984)	cul5 (ENSIPUG00000015796)	ENSIPUG00000015761	tuba1a (ENSIPUG00000015759)	ENSIPUG00000015743	dhx40 (ENSIPUG00000015673)	cltc (ENSIPUG00000015496)	vmp1 (ENSIPUG00000015448)	tubd1 (ENSIPUG00000015416)	rps6kb1 (ENSIPUG00000015350) ##22	snx19 (ENSIPUG00000015323)	ENSIPUG00000015253	ADAMTS8 (ENSIPUG00000015232)	ENSIPUG00000015217	ENSIPUG00000015199	pou2af1 (ENSIPUG00000015171)	zgc:113279 (ENSIPUG00000015147)	ENSIPUG00000015135	PHLDB1 (ENSIPUG00000014949)	ENSIPUG00000014911	ENSIPUG00000014902	ENSIPUG00000014891	med13 (ENSIPUG00000014773)	AUTS2 (ENSIPUG00000014760)	zgc:112083 (ENSIPUG00000014663)
Characiphysae_b	ANCESTRAL SPECIES	14	ENSGT00510000047059	ENSGT00390000007848.a.c	ENSGT00940000156673	ENSGT00940000159010.g.b	ENSGT00940000153594.d	ENSGT00530000063461.B	ENSGT00940000160233	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00950000182856.b.c	ENSGT00940000155801.c	ENSGT00940000159642.f.a	ENSGT00940000167856.b	ENSGT00940000177557	ENSGT00940000168466	ENSGT00940000153695.A	ENSGT00530000063801.b.g	ENSGT00940000155231.a.a	ENSGT00390000014712.a.a	ENSGT00390000013680.b.b	ENSGT00940000154823	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b
Characoidei	ANCESTRAL SPECIES	12	ENSGT00510000047059	ENSGT00390000007848.a.c	ENSGT00940000156673	ENSGT00940000159010.g.b	ENSGT00940000153594.d	ENSGT00530000063461.B	ENSGT00940000160233	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00950000182856.b.c	ENSGT00940000155801.c	ENSGT00940000159642.f.a	ENSGT00940000167856.b	ENSGT00940000177557	ENSGT00940000168466	ENSGT00940000153695.A	ENSGT00530000063801.b.g	ENSGT00940000155231.a.a	ENSGT00390000014712.a.a	ENSGT00390000013680.b.b	ENSGT00940000154823	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b
Red-bellied piranha	MODERN SPECIES	546									cul5a (ENSPNAG00000024709)	ENSPNAG00000024754	ENSPNAG00000024767	DHX40 (ENSPNAG00000024815)	cltcb (ENSPNAG00000006697)	vmp1 (ENSPNAG00000025107)	tubd1 (ENSPNAG00000025143)	rps6kb1b (ENSPNAG00000003900) ##22	SNX19 (ENSPNAG00000025317)	ENSPNAG00000025324	ADAMTS8 (ENSPNAG00000005196)	ENSPNAG00000025353	ENSPNAG00000025372
Mexicana tetra	MODERN SPECIES	11	zgc:172282 (ENSAMXG00000009318)	ENSAMXG00000041073	ENSAMXG00000034907	TIAM1 (ENSAMXG00000001973)	ENSAMXG00000036256	mos (ENSAMXG00000001991)	ENSAMXG00000040998	mrpl28 (ENSAMXG00000001999)	cul5a (ENSAMXG00000035613)	ENSAMXG00000002027	DHX40 (ENSAMXG00000002031)	cltcb (ENSAMXG00000002036)	ENSAMXG00000044057	vmp1 (ENSAMXG00000034404)	tubd1 (ENSAMXG00000037376)	rps6kb1b (ENSAMXG00000002047) ##22	SNX19 (ENSAMXG00000002051)	ENSAMXG00000029165	ADAMTS8 (ENSAMXG00000037225)	ENSAMXG00000035465	ENSAMXG00000030782	ENSAMXG00000042879	ENSAMXG00000036212	zgc:113279 (ENSAMXG00000002706)	ENSAMXG00000002726	PHLDB1 (ENSAMXG00000002751)	ENSAMXG00000002789	med13b (ENSAMXG00000002817)	ENSAMXG00000040896	zgc:112083 (ENSAMXG00000002891)	AUTS2 (ENSAMXG00000043649)
Electric eel	MODERN SPECIES	384										cul5a (ENSEEEG00000001913)	ENSEEEG00000001923	DHX40 (ENSEEEG00000001927)	cltcb (ENSEEEG00000001965)	vmp1 (ENSEEEG00000003353)	tubd1 (ENSEEEG00000003361)	rps6kb1b (ENSEEEG00000003363) ##22	SNX19 (ENSEEEG00000003574)	ENSEEEG00000003584	ADAMTS8 (ENSEEEG00000003650)	ENSEEEG00000003670	ENSEEEG00000003672	zgc:113279 (ENSEEEG00000003675)	ENSEEEG00000003678	PHLDB1 (ENSEEEG00000003684)	ENSEEEG00000003686	med13b (ENSEEEG00000003746)	ENSEEEG00000004270	zgc:112083 (ENSEEEG00000004274)	ENSEEEG00000004276	thap12b (ENSEEEG00000004277)	dyrk1ab (ENSEEEG00000004282)
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000153594.d	ENSGT00950000182920.b.a.b.a.a	ENSGT01030000234974	ENSGT00530000063461.B	ENSGT00940000160233	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156648.e	ENSGT00940000161532.b	ENSGT00940000161532.a	ENSGT00730000113168	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00950000182856.b.c	ENSGT00940000155801.c	ENSGT00940000159642.f.a	ENSGT00940000167856.b	ENSGT00940000177557	ENSGT00940000168466	ENSGT00940000153695.A	ENSGT00530000063801.b.g	ENSGT00940000154904	ENSGT00940000155231.a.a	ENSGT00390000017207.i.a	ENSGT00940000157434.c	ENSGT00950000182903.b.b.o.a.a	ENSGT00510000048581	ENSGT00940000159163
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	92	ENSGT00940000156673.j	ENSGT00940000159010.g.b	ENSGT00940000153594.d.d	ENSGT00950000182920.b.a.b.a.a.c.b	ENSGT01030000234974.b	ENSGT00530000063461.B.d	ENSGT00940000160230.j	ENSGT00390000017359.e	ENSGT00940000156648.e.a	ENSGT00940000161532.a.b	ENSGT00940000161532.a.a	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a.e	ENSGT00390000007230.b.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a.a ##22	ENSGT00950000182856.b.c.c	ENSGT00940000155801.c.a	ENSGT00940000159642.f.a.j	ENSGT00940000167856.b.f	ENSGT00940000168466.a.a	ENSGT00940000153695.A.d	ENSGT00530000063801.b.g.a	ENSGT00940000154904.k.a.a.b	ENSGT00940000155231.a.a.n	ENSGT00390000017207.i.a.a	ENSGT00940000157434.c.a.b	ENSGT00950000182903.b.b.o.a.a.b	ENSGT00510000048581.a	ENSGT00940000159163.n	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.b.a
Goldfish	MODERN SPECIES	34	ENSCARG00000017115	hip1 (ENSCARG00000017186)	plin2 (ENSCARG00000018167)	lgals17 (ENSCARG00000018173)	clptm1 (ENSCARG00000018186)	ENSCARG00000018281	mrpl28 (ENSCARG00000018286)	cul5a (ENSCARG00000018298)	ENSCARG00000018477	ENSCARG00000018506	DHX40 (ENSCARG00000018540)	ENSCARG00000018692	cltcb (ENSCARG00000018739)	vmp1 (ENSCARG00000019606)	tubd1 (ENSCARG00000019823)	rps6kb1b (ENSCARG00000019854) ##22	SNX19 (ENSCARG00000019984)	ENSCARG00000019995	ADAMTS8 (ENSCARG00000020026)	ENSCARG00000020056	ENSCARG00000020078	zgc:113279 (ENSCARG00000006060)	ENSCARG00000006073	ENSCARG00000006121	PHLDB1 (ENSCARG00000006617)	arcn1b (ENSCARG00000008069)	cryaba (ENSCARG00000008127)	dixdc1a (ENSCARG00000008136)	TMPRSS5 (ENSCARG00000008161)	ENSCARG00000008171	ENSCARG00000008173
Cyprininae_a	ANCESTRAL SPECIES	116	ENSGT00940000156673.j	ENSGT00940000159010.g.b.b	ENSGT00940000153594.d.d	ENSGT00950000182920.b.a.b.a.a.c.b	ENSGT01030000234974.b	ENSGT00530000063461.B.d	ENSGT00940000160230.j	ENSGT00390000017359.e	ENSGT00940000156648.e.a	ENSGT00940000161532.a.b	ENSGT00940000161532.a.a	ENSGT00940000158902	ENSGT00950000183166.a.a.a.b.e.a.e	ENSGT00390000007230.b.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a.a ##22	ENSGT00950000182856.b.c.c	ENSGT00940000155801.c.a	ENSGT00940000159642.f.a.j	ENSGT00940000167856.b.f	ENSGT00940000168466.a.a	ENSGT00940000153695.A.d	ENSGT00530000063801.b.g.a	ENSGT00940000154904.k.a.a.b	ENSGT00940000162996.j	ENSGT00940000155231.a.a.n	ENSGT00390000017207.i.a.a	ENSGT00940000157434.c.a.b	ENSGT00950000182903.b.b.o.a.a.b	ENSGT00510000048581.a	ENSGT00940000159163.n
Common carp reference	MODERN SPECIES	39	gdpd1 (ENSCCRG00000006979)	ENSCCRG00000081908	hip1 (ENSCCRG00000004949)	plin2 (ENSCCRG00000047866)	lgals17 (ENSCCRG00000066698)	clptm1 (ENSCCRG00000016330)	ENSCCRG00000016319	mrpl28 (ENSCCRG00000045526)	cul5a (ENSCCRG00000055967)	ENSCCRG00000040769	ENSCCRG00000044853	DHX40 (ENSCCRG00000045045)	cltcb (ENSCCRG00000045130)	vmp1 (ENSCCRG00000056267)	tubd1 (ENSCCRG00000046954)	rps6kb1b (ENSCCRG00000046967) ##22	ENSCCRG00000007963	ENSCCRG00000027505	ENSCCRG00000070847	ENSCCRG00000082012	ENSCCRG00000064916	ENSCCRG00000055079	zgc:113279 (ENSCCRG00000007467)	ENSCCRG00000007510	ENSCCRG00000007456	ENSCCRG00000042379	arcn1b (ENSCCRG00000007010)	cryaba (ENSCCRG00000042526)	dixdc1a (ENSCCRG00000007008)	pih1d2 (ENSCCRG00000007006)	ENSCCRG00000007003
Golden-line barbel	MODERN SPECIES	232	shox (ENSSGRG00000041658)	ENSSGRG00000041659	ENSSGRG00000041660	med14 (ENSSGRG00000041679)	grtp1b (ENSSGRG00000042166)	cd247l (ENSSGRG00000042167)	pou2f1b (ENSSGRG00000042169)	ENSSGRG00000042172	ildr2 (ENSSGRG00000042173)	ENSSGRG00000042174	ENSSGRG00000042176	ENSSGRG00000042178	nxpe3 (ENSSGRG00000042180)	mpc2b (ENSSGRG00000042182)	dcaf6 (ENSSGRG00000042186)	rps6kb1b (ENSSGRG00000042190) ##22	SNX19 (ENSSGRG00000042476)	ENSSGRG00000042477	ADAMTS8 (ENSSGRG00000042509)	ENSSGRG00000042539	ENSSGRG00000042541	zgc:113279 (ENSSGRG00000042543)	ENSSGRG00000042544	ENSSGRG00000042545	PHLDB1 (ENSSGRG00000042551)	arcn1b (ENSSGRG00000042872)	ENSSGRG00000042997	pih1d2 (ENSSGRG00000042999)	ENSSGRG00000043000	ENSSGRG00000043001	ENSSGRG00000043004
Cyprininae	ANCESTRAL SPECIES	13	ENSGT00940000159212.a.i	ENSGT00510000047059.c	ENSGT00390000007848.a.c	ENSGT00940000156673.i	ENSGT00940000153594.d.c	ENSGT00950000182920.b.a.b.a.a.c.a	ENSGT01030000234974.a	ENSGT00530000063461.B.c	ENSGT00940000160233	ENSGT00940000160230.i	ENSGT00390000017359.f	ENSGT00940000156648.e.b	ENSGT00940000161532.b	ENSGT00950000183166.a.a.a.b.e.a.f	ENSGT00390000007230.b.a	ENSGT00940000155062.b.d.a.b ##22	ENSGT00950000182856.b.c.d	ENSGT00940000155801.c.b.a	ENSGT00940000159642.f.a.i	ENSGT00940000167856.b.e	ENSGT00940000168466.a.b	ENSGT00940000177557	ENSGT00940000168466.b	ENSGT00940000153695.A.c	ENSGT00530000063801.b.g.b	ENSGT00940000154904.l	ENSGT00940000155231.a.a.m	ENSGT00390000017207.i.a.b	ENSGT00940000157434.c.a.a	ENSGT00950000182903.b.b.o.a.a.a	ENSGT00510000048581.b
Goldfish	MODERN SPECIES	6	tmem120ab (ENSCARG00000051241)	gdpd1 (ENSCARG00000051133)	YPEL2 (ENSCARG00000051106)	hip1 (ENSCARG00000050171)	plin2 (ENSCARG00000050083)	lgals17 (ENSCARG00000050068)	clptm1 (ENSCARG00000049991)	c-mos (ENSCARG00000049965)	ENSCARG00000049951	ENSCARG00000049822	cul5a (ENSCARG00000049549)	ENSCARG00000049501	ENSCARG00000049387	cltcb (ENSCARG00000047152)	vmp1 (ENSCARG00000047030)	rps6kb1b (ENSCARG00000044677) ##22	SNX19 (ENSCARG00000044596)	ENSCARG00000044542	ADAMTS8 (ENSCARG00000044408)	ENSCARG00000044372	ENSCARG00000044342	zgc:113279 (ENSCARG00000044303)	ENSCARG00000044287	ENSCARG00000044186	ENSCARG00000044166	PHLDB1 (ENSCARG00000041981)	arcn1b (ENSCARG00000041685)	cryaba (ENSCARG00000041656)	dixdc1a (ENSCARG00000041579)	pih1d2 (ENSCARG00000041565)	ENSCARG00000041507
Cyprininae_a	ANCESTRAL SPECIES	27	ENSGT00940000159212.a.i	ENSGT00510000047059.c	ENSGT00390000007848.a.c	ENSGT00940000156673.i	ENSGT00940000159010.g.b.a	ENSGT00940000153594.d.c	ENSGT00950000182920.b.a.b.a.a.c.a	ENSGT01030000234974.a	ENSGT00530000063461.B.c	ENSGT00940000160230.i	ENSGT00390000017359.f	ENSGT00940000156648.e.b	ENSGT00940000161532.b	ENSGT00950000183166.a.a.a.b.e.a.f	ENSGT00390000007230.b.a	ENSGT00940000155062.b.d.a.b ##22	ENSGT00950000182856.b.c.d	ENSGT00940000155801.c.b.a	ENSGT00940000159642.f.a.i	ENSGT00940000167856.b.e	ENSGT00940000168466.a.b	ENSGT00940000177557	ENSGT00940000168466.b	ENSGT00940000153695.A.c	ENSGT00530000063801.b.g.b	ENSGT00940000154904.l	ENSGT00940000155231.a.a.m	ENSGT00390000017207.i.a.b	ENSGT00940000157434.c.a.a	ENSGT00950000182903.b.b.o.a.a.a	ENSGT00510000048581.b
Common carp reference	MODERN SPECIES	26	ENSCCRG00000062402	tyw1 (ENSCCRG00000006852)	tmem120ab (ENSCCRG00000006863)	gdpd1 (ENSCCRG00000055190)	ENSCCRG00000006985	plin2 (ENSCCRG00000078256)	hip1 (ENSCCRG00000022349)	clptm1 (ENSCCRG00000059984)	ENSCCRG00000069886	mrpl28 (ENSCCRG00000063857)	cul5a (ENSCCRG00000062279)	ENSCCRG00000074713	ENSCCRG00000045907	cltcb (ENSCCRG00000045999)	vmp1 (ENSCCRG00000046892)	rps6kb1b (ENSCCRG00000049274) ##22	ENSCCRG00000063982	ENSCCRG00000070041	ENSCCRG00000027436	ENSCCRG00000027512	ENSCCRG00000060519	ENSCCRG00000027498	zgc:113279 (ENSCCRG00000027495)	ENSCCRG00000007464	ENSCCRG00000007498	ENSCCRG00000007492	ENSCCRG00000081350	arcn1b (ENSCCRG00000042393)	cryaba (ENSCCRG00000060486)	dixdc1a (ENSCCRG00000042546)	pih1d2 (ENSCCRG00000042559)
Zebrafish	MODERN SPECIES	6	hip1 (ENSDARG00000062972)	plin2 (ENSDARG00000042332)	lgals17 (ENSDARG00000088251)	clptm1 (ENSDARG00000018973)	mos (ENSDARG00000069744)	ENSDARG00000086173	mrpl28 (ENSDARG00000057805)	cul5a (ENSDARG00000069742)	ENSDARG00000057787	ENSDARG00000098012	ENSDARG00000097065	DHX40 (ENSDARG00000041586)	cltcb (ENSDARG00000090716)	vmp1 (ENSDARG00000012450)	tubd1 (ENSDARG00000058219)	rps6kb1b (ENSDARG00000058230) ##22	SNX19 (ENSDARG00000079931)	ENSDARG00000033544	ADAMTS8 (ENSDARG00000058252)	ENSDARG00000058254	ENSDARG00000097483	ENSDARG00000104312	zgc:113279 (ENSDARG00000099533)	ENSDARG00000077785	PHLDB1 (ENSDARG00000079378)	arcn1b (ENSDARG00000031214)	cryaba (ENSDARG00000042621)	dixdc1a (ENSDARG00000025302)	ENSDARG00000108432	pih1d2 (ENSDARG00000014849)	ENSDARG00000087717
Clupeiformes	ANCESTRAL SPECIES	872																ENSGT00940000155062.b.d.a ##22	ENSGT00390000013680.b.b
Atlantic herring	MODERN SPECIES	8	VSIG2 (ENSCHAG00000015204)	ENSCHAG00000015318	ROBO3 (ENSCHAG00000015342)	ENSCHAG00000015460	lim2.3 (ENSCHAG00000015485)	HSPA8 (ENSCHAG00000015525)	ENSCHAG00000015970	ENSCHAG00000016014	picalmb (ENSCHAG00000016048)	ZPLD1 (ENSCHAG00000016440)	ENSCHAG00000016522	DGAT2 (ENSCHAG00000016533)	ENSCHAG00000016577	zgc:112083 (ENSCHAG00000016615)	ENSCHAG00000016744	rps6kb1b (ENSCHAG00000017089) ##22	med13b (ENSCHAG00000017619)	ENSCHAG00000020698	ENSCHAG00000022010	ENSCHAG00000002421	ENSCHAG00000003337	WDR53 (ENSCHAG00000004728)	srprb (ENSCHAG00000004736)	ENSCHAG00000004753	ENSCHAG00000004776	ENSCHAG00000004793	zcchc17 (ENSCHAG00000004958)	wdr37 (ENSCHAG00000005026)	ADARB2 (ENSCHAG00000005372)	ENSCHAG00000005378	PFKP (ENSCHAG00000005498)
Euteleosteomorpha	ANCESTRAL SPECIES	7	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00980000198612	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154203	ENSGT00390000013680.b.b	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b	ENSGT00940000157408.a.b	ENSGT00940000156881.g	ENSGT00940000164443.a.a.b	ENSGT00940000156527.d	ENSGT00950000183068.a.b.d	ENSGT00940000166822	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.a	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00940000155457.a.b
Acanthomorphata	ANCESTRAL SPECIES	37	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00980000198612	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00980000198612	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00940000178743	ENSGT00940000165615.a	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00980000198612	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00940000156017.fb	ENSGT00980000198612	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Ballan wrasse	MODERN SPECIES	187	SACS (ENSLBEG00000012985)	ENSLBEG00000012942	MIPEP (ENSLBEG00000012788)	ENSLBEG00000012658	ENSLBEG00000012641	get1 (ENSLBEG00000012607)	sh3bgr (ENSLBEG00000012550)	PCP4 (ENSLBEG00000012516)	DSCAM (ENSLBEG00000012440)	bace2 (ENSLBEG00000012380)	ENSLBEG00000012284	ATM (ENSLBEG00000012075)	ENSLBEG00000011976	vmp1 (ENSLBEG00000011931)	tubd1 (ENSLBEG00000011893)	rps6kb1b (ENSLBEG00000011832) ##22	slc33a1 (ENSLBEG00000011762)	gmps (ENSLBEG00000011676)	ENSLBEG00000011623	KCNAB1 (ENSLBEG00000011567)	ssr3 (ENSLBEG00000011529)	TIPARP (ENSLBEG00000011510)	ENSLBEG00000011488	ccnl1a (ENSLBEG00000011423)	PTX3 (ENSLBEG00000011385)	veph1 (ENSLBEG00000011336)	ENSLBEG00000011295	ENSLBEG00000011230	ENSLBEG00000011193	serpini1 (ENSLBEG00000011139)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Perciformes	ANCESTRAL SPECIES	10	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000154203	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000159847	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000154203	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Channel bull blenny	MODERN SPECIES	4	tnfrsf19 (ENSCGOG00000013459)	MIPEP (ENSCGOG00000011811)	BRWD1 (ENSCGOG00000010580)	get1 (ENSCGOG00000010518)	ENSCGOG00000010514	sh3bgr (ENSCGOG00000010512)	PCP4 (ENSCGOG00000010510)	DSCAM (ENSCGOG00000010331)	bace2 (ENSCGOG00000010192)	ENSCGOG00000010187	ENSCGOG00000010186	ATM (ENSCGOG00000009803)	ENSCGOG00000009762	vmp1 (ENSCGOG00000009611)	tubd1 (ENSCGOG00000009591)	rps6kb1b (ENSCGOG00000007441) ##22	slc33a1 (ENSCGOG00000007409)	gmps (ENSCGOG00000006633)	ENSCGOG00000006594	ssr3 (ENSCGOG00000006585)	TIPARP (ENSCGOG00000006581)	ENSCGOG00000006572	ccnl1a (ENSCGOG00000006520)	PTX3 (ENSCGOG00000006518)	veph1 (ENSCGOG00000006443)	ENSCGOG00000006431	ENSCGOG00000006429	ENSCGOG00000006427	serpini1 (ENSCGOG00000006326)	pdcd10a (ENSCGOG00000006318)	ENSCGOG00000006314
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00940000165905	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000156017.fb	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT01030000236977	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000154203	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Lumpfish	MODERN SPECIES	4	tnfrsf19 (ENSCLMG00005009631)	MIPEP (ENSCLMG00005008099)	ENSCLMG00005005199	get1 (ENSCLMG00005005177)	ENSCLMG00005005176	sh3bgr (ENSCLMG00005005175)	ENSCLMG00005005173	ENSCLMG00005005171	DSCAM (ENSCLMG00005004757)	bace2 (ENSCLMG00005004602)	ENSCLMG00005004592	ATM (ENSCLMG00005004417)	ENSCLMG00005004360	vmp1 (ENSCLMG00005004248)	tubd1 (ENSCLMG00005004241)	rps6kb1b (ENSCLMG00005002261) ##22	slc33a1 (ENSCLMG00005002225)	gmps (ENSCLMG00005001830)	ENSCLMG00005001666	kcnab1a (ENSCLMG00005001395)	ssr3 (ENSCLMG00005001348)	TIPARP (ENSCLMG00005014365)	ENSCLMG00005014363	ccnl1a (ENSCLMG00005014288)	PTX3 (ENSCLMG00005014275)	veph1 (ENSCLMG00005014271)	ENSCLMG00005014270	ENSCLMG00005014269	ENSCLMG00005014268	serpini1 (ENSCLMG00005014267)	pdcd10a (ENSCLMG00005014266)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
European seabass	MODERN SPECIES	3	TNFRSF19 (ENSDLAG00005012166)	MIPEP (ENSDLAG00005012227)	BRWD1 (ENSDLAG00005014292)	GET1 (ENSDLAG00005028635)	ENSDLAG00005033085	sh3bgr (ENSDLAG00005033194)	ENSDLAG00005015529	PCP4 (ENSDLAG00005034194)	ENSDLAG00005015557	bace2 (ENSDLAG00005015782)	ENSDLAG00005015906	ENSDLAG00005015958	ENSDLAG00005034756	vmp1 (ENSDLAG00005000095)	ENSDLAG00005000199	rps6kb1b (ENSDLAG00005000265) ##22	slc33a1 (ENSDLAG00005000369)	gmps (ENSDLAG00005000390)	ENSDLAG00005000541	kcnab1a (ENSDLAG00005033535)	ssr3 (ENSDLAG00005034114)	TIPARP (ENSDLAG00005000653)	ENSDLAG00005029556	ENSDLAG00005000662	VEPH1 (ENSDLAG00005000686)	ENSDLAG00005028846	ENSDLAG00005031780	ENSDLAG00005000713	ENSDLAG00005000719	serpini1 (ENSDLAG00005000720)	pdcd10a (ENSDLAG00005000725)
Large yellow croaker	MODERN SPECIES	479	SACS (ENSLCRG00005009399)	tnfrsf19 (ENSLCRG00005009394)	MIPEP (ENSLCRG00005009341)	ENSLCRG00005006800	GET1 (ENSLCRG00005006768)	SH3BGRL (ENSLCRG00005006767)	ENSLCRG00005006765	ENSLCRG00005006764	DSCAM (ENSLCRG00005004721)	bace2 (ENSLCRG00005004486)	ENSLCRG00005004478	ATM (ENSLCRG00005002491)	ENSLCRG00005020210	vmp1 (ENSLCRG00005020202)	tubd1 (ENSLCRG00005020200)	rps6kb1b (ENSLCRG00005020043) ##22	slc33a1 (ENSLCRG00005020034)	gmps (ENSLCRG00005019918)	ENSLCRG00005019917	KCNAB1 (ENSLCRG00005019456)	ssr3 (ENSLCRG00005019439)	TIPARP (ENSLCRG00005019437)	ENSLCRG00005019436	ccnl1a (ENSLCRG00005019432)	PTX3 (ENSLCRG00005019431)	veph1 (ENSLCRG00005019426)	ENSLCRG00005019425	ENSLCRG00005019422	ENSLCRG00005019419	serpini1 (ENSLCRG00005019413)	pdcd10a (ENSLCRG00005019412)
Gilthead seabream	MODERN SPECIES	11	tnfrsf19 (ENSSAUG00010008977)	MIPEP (ENSSAUG00010007830)	BRWD1 (ENSSAUG00010005505)	GET1 (ENSSAUG00010005439)	ENSSAUG00010005437	sh3bgr (ENSSAUG00010005431)	ENSSAUG00010005429	PCP4 (ENSSAUG00010005428)	DSCAM (ENSSAUG00010004746)	bace2 (ENSSAUG00010004045)	ENSSAUG00010004041	ATM (ENSSAUG00010024686)	ENSSAUG00010024677	vmp1 (ENSSAUG00010024671)	tubd1 (ENSSAUG00010024666)	rps6kb1b (ENSSAUG00010024586) ##22	slc33a1 (ENSSAUG00010024579)	gmps (ENSSAUG00010024081)	ENSSAUG00010024068	KCNAB1 (ENSSAUG00010024065)	ssr3 (ENSSAUG00010024063)	TIPARP (ENSSAUG00010024062)	ENSSAUG00010024059	ccnl1a (ENSSAUG00010024057)	ENSSAUG00010024054	PTX3 (ENSSAUG00010024052)	veph1 (ENSSAUG00010024046)	ENSSAUG00010024042	ENSSAUG00010024040	ENSSAUG00010024038	serpini1 (ENSSAUG00010024035)
Tetraodontidae	ANCESTRAL SPECIES	42	ENSGT00390000004856	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT01030000235087	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591.p	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000157637.a.n.b	ENSGT00940000158681.a	ENSGT00940000157637.a.n.a	ENSGT00940000157637.a.m
Fugu	MODERN SPECIES	2	rps25 (ENSTRUG00000000547)	sgcg (ENSTRUG00000000565)	SACS (ENSTRUG00000000662)	tnfrsf19 (ENSTRUG00000000696)	MIPEP (ENSTRUG00000000713)	GET1 (ENSTRUG00000001308)	sh3bgr (ENSTRUG00000001393)	ENSTRUG00000001463	DSCAM (ENSTRUG00000001465)	bace2 (ENSTRUG00000002469)	TMPRSS2 (ENSTRUG00000002768)	ATM (ENSTRUG00000030407)	ENSTRUG00000023256	vmp1 (ENSTRUG00000005028)	tubd1 (ENSTRUG00000005354)	rps6kb1b (ENSTRUG00000005648) ##22	slc33a1 (ENSTRUG00000006020)	gmps (ENSTRUG00000006141)	ENSTRUG00000006589	KCNAB1 (ENSTRUG00000007233)	ssr3 (ENSTRUG00000021463)	TIPARP (ENSTRUG00000022644)	ccnl1a (ENSTRUG00000012879)	veph1 (ENSTRUG00000026457)	ptx3 (ENSTRUG00000027736)	ENSTRUG00000012672	ENSTRUG00000012663	serpini1 (ENSTRUG00000012444)	ENSTRUG00000028082	ENSTRUG00000001552	ENSTRUG00000026202
Tetraodon	MODERN SPECIES	26	septin4a (ENSTNIG00000003311)	wnt4b (ENSTNIG00000003321)	cdc42l (ENSTNIG00000003322)	mlf2 (ENSTNIG00000003323)	ENO2 (ENSTNIG00000003324)	dnali1 (ENSTNIG00000003325)	SNIP1 (ENSTNIG00000000342)	rnf150b (ENSTNIG00000003327)	ENSTNIG00000003329	ENSTNIG00000003331	ENSTNIG00000005878	ENSTNIG00000003333	ENSTNIG00000003334	vmp1 (ENSTNIG00000003335)	tubd1 (ENSTNIG00000003336)	rps6kb1b (ENSTNIG00000003337) ##22	slc33a1 (ENSTNIG00000003338)	gmps (ENSTNIG00000003339)	ENSTNIG00000003340	aldh4a1 (ENSTNIG00000003342)	ENSTNIG00000000263	slc38a9 (ENSTNIG00000003352)	ENSTNIG00000003354	dusp16 (ENSTNIG00000003355)	crebl2 (ENSTNIG00000003356)	gpr19 (ENSTNIG00000003357)	tbk1 (ENSTNIG00000003358)	lrp6 (ENSTNIG00000003359)	ENSTNIG00000001161	PLPPR5 (ENSTNIG00000003367)	tyw3 (ENSTNIG00000003368)
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000165905	ENSGT00940000156017.fb	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00980000203400	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000164489	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637.w	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Climbing perch	MODERN SPECIES	4	sgcg (ENSATEG00000001297)	SACS (ENSATEG00000001324)	TNFRSF19 (ENSATEG00000001369)	MIPEP (ENSATEG00000001402)	BRWD1 (ENSATEG00000025243)	ENSATEG00000001447	sh3bgr (ENSATEG00000027004)	ENSATEG00000025365	PCP4 (ENSATEG00000030128)	ENSATEG00000001528	bace2 (ENSATEG00000001688)	ENSATEG00000001745	ENSATEG00000002259	vmp1 (ENSATEG00000002271)	ENSATEG00000002282	rps6kb1b (ENSATEG00000002322) ##22	slc33a1 (ENSATEG00000002379)	gmps (ENSATEG00000002414)	ENSATEG00000002487	kcnab1a (ENSATEG00000002685)	ssr3 (ENSATEG00000002923)	TIPARP (ENSATEG00000002945)	ENSATEG00000002998	VEPH1 (ENSATEG00000003338)	ENSATEG00000003353	ENSATEG00000003367	ENSATEG00000003384	ENSATEG00000003399	ENSATEG00000003428	serpini1 (ENSATEG00000003455)	pdcd10a (ENSATEG00000028772)
Siamese fighting fish	MODERN SPECIES	4	rps25 (ENSBSLG00000002417)	sgcg (ENSBSLG00000002399)	SACS (ENSBSLG00000002286)	tnfrsf19 (ENSBSLG00000002236)	MIPEP (ENSBSLG00000025221)	BRWD1 (ENSBSLG00000024719)	GET1 (ENSBSLG00000024662)	sh3bgr (ENSBSLG00000024644)	PCP4 (ENSBSLG00000024632)	DSCAM (ENSBSLG00000024564)	bace2 (ENSBSLG00000024512)	ATM (ENSBSLG00000024399)	ENSBSLG00000024388	vmp1 (ENSBSLG00000024375)	tubd1 (ENSBSLG00000024370)	rps6kb1b (ENSBSLG00000023815) ##22	slc33a1 (ENSBSLG00000023790)	gmps (ENSBSLG00000023613)	KCNAB1 (ENSBSLG00000023499)	ssr3 (ENSBSLG00000023464)	TIPARP (ENSBSLG00000023451)	ccnl1a (ENSBSLG00000023262)	PTX3 (ENSBSLG00000023245)	veph1 (ENSBSLG00000023219)	ENSBSLG00000023217	ENSBSLG00000023207	pdcd10a (ENSBSLG00000023205)	ENSBSLG00000023203	ENSBSLG00000023190	ENSBSLG00000023182	ENSBSLG00000023129
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000026828	ENSMAMG00000003059	ENSMAMG00000003093	ENSMAMG00000003129	ENSMAMG00000003188	ENSMAMG00000003277	sh3bgr (ENSMAMG00000003326)	ENSMAMG00000003391	ENSMAMG00000003410	ENSMAMG00000003431	bace2 (ENSMAMG00000003518)	ENSMAMG00000003551	ENSMAMG00000003763	vmp1 (ENSMAMG00000003783)	ENSMAMG00000003847	rps6kb1b (ENSMAMG00000003898) ##22	slc33a1 (ENSMAMG00000003947)	gmps (ENSMAMG00000003973)	KCNAB1 (ENSMAMG00000004062)	ssr3 (ENSMAMG00000027905)	TIPARP (ENSMAMG00000004108)	ENSMAMG00000004117	ENSMAMG00000004139	ENSMAMG00000004160	VEPH1 (ENSMAMG00000004227)	ENSMAMG00000025628	ENSMAMG00000004259	ENSMAMG00000004283	serpini1 (ENSMAMG00000004322)	pdcd10a (ENSMAMG00000004345)	ENSMAMG00000004378
Carangaria	ANCESTRAL SPECIES	8	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000165905	ENSGT00940000156017.fb	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Seriola	ANCESTRAL SPECIES	107		ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000156017.fb	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Greater amberjack	MODERN SPECIES	263		tnfrsf19 (ENSSDUG00000011111)	MIPEP (ENSSDUG00000011133)	BRWD1 (ENSSDUG00000011194)	ENSSDUG00000011259	GET1 (ENSSDUG00000011276)	SH3BGRL (ENSSDUG00000011284)	PCP4 (ENSSDUG00000011309)	DSCAM (ENSSDUG00000011324)	bace2 (ENSSDUG00000011375)	ENSSDUG00000011401	ATM (ENSSDUG00000011432)	ENSSDUG00000011642	vmp1 (ENSSDUG00000011759)	tubd1 (ENSSDUG00000011791)	rps6kb1b (ENSSDUG00000011826) ##22	slc33a1 (ENSSDUG00000011921)	gmps (ENSSDUG00000011961)	ENSSDUG00000012007	kcnab1a (ENSSDUG00000012041)	ssr3 (ENSSDUG00000012065)	TIPARP (ENSSDUG00000012080)	ENSSDUG00000012089	ccnl1a (ENSSDUG00000012095)	veph1 (ENSSDUG00000012112)	PTX3 (ENSSDUG00000012167)	ENSSDUG00000012207	ENSSDUG00000012221	ENSSDUG00000012238	ENSSDUG00000012271	serpini1 (ENSSDUG00000012287)
Yellowtail amberjack	MODERN SPECIES	2709	MIPEP (ENSSLDG00000018219)	ENSSLDG00000018147	ENSSLDG00000018131	GET1 (ENSSLDG00000018117)	SH3BGRL (ENSSLDG00000018039)	ENSSLDG00000017997	PCP4 (ENSSLDG00000017984)	DSCAM (ENSSLDG00000017857)	bace2 (ENSSLDG00000017766)	ENSSLDG00000017743	ATM (ENSSLDG00000017590)	ENSSLDG00000017562	ENSSLDG00000017549	vmp1 (ENSSLDG00000017538)	tubd1 (ENSSLDG00000017471)	rps6kb1b (ENSSLDG00000017438) ##22	slc33a1 (ENSSLDG00000017409)	gmps (ENSSLDG00000017360)	ENSSLDG00000017315	KCNAB1 (ENSSLDG00000017278)	ssr3 (ENSSLDG00000017262)	TIPARP (ENSSLDG00000017252)	ccnl1a (ENSSLDG00000017234)
Barramundi perch	MODERN SPECIES	311				MIPEP (ENSLCAG00010008971)	BRWD1 (ENSLCAG00010008026)	GET1 (ENSLCAG00010007806)	sh3bgr (ENSLCAG00010007787)	ENSLCAG00010007770	ENSLCAG00010007764	DSCAM (ENSLCAG00010007372)	bace2 (ENSLCAG00010007279)	TMPRSS2 (ENSLCAG00010007274)	ENSLCAG00010007223	vmp1 (ENSLCAG00010007207)	tubd1 (ENSLCAG00010007190)	rps6kb1b (ENSLCAG00010006981) ##22	slc33a1 (ENSLCAG00010006951)	gmps (ENSLCAG00010006816)	ENSLCAG00010006770	ENSLCAG00010006762	KCNAB1 (ENSLCAG00010006738)	ssr3 (ENSLCAG00010006719)	TIPARP (ENSLCAG00010006708)
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00940000165905	ENSGT00940000156017.fb	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a	ENSGT00940000160751
Turbot	MODERN SPECIES	15	ENSSMAG00000023732	ENSSMAG00000035276	MIPEP (ENSSMAG00000003706)	BRWD1 (ENSSMAG00000033221)	ENSSMAG00000003726	sh3bgr (ENSSMAG00000025337)	ENSSMAG00000003771	ENSSMAG00000003801	ENSSMAG00000003813	bace2 (ENSSMAG00000003934)	ENSSMAG00000003958	ENSSMAG00000003979	ENSSMAG00000004072	vmp1 (ENSSMAG00000004088)	ENSSMAG00000004126	rps6kb1b (ENSSMAG00000004157) ##22	ENSSMAG00000004204	aamdc (ENSSMAG00000025950)	ENSSMAG00000004233	KCTD14 (ENSSMAG00000034158)	rps3 (ENSSMAG00000004341)	ENSSMAG00000031710	ENSSMAG00000037429	ENSSMAG00000019928	ENSSMAG00000010153	ENSSMAG00000000805	ENSSMAG00000033293	ENSSMAG00000004780	zgc:101731 (ENSSMAG00000030306)	ENSSMAG00000004795	zgc:162698 (ENSSMAG00000004823)
Tongue sole	MODERN SPECIES	14	ENSCSEG00000002124	tnfrsf19 (ENSCSEG00000002123)	MIPEP (ENSCSEG00000002112)	ENSCSEG00000002102	ENSCSEG00000002092	get1 (ENSCSEG00000002084)	ENSCSEG00000002075	PCP4 (ENSCSEG00000002068)	DSCAM (ENSCSEG00000002056)	bace2 (ENSCSEG00000002049)	ENSCSEG00000002045	ATM (ENSCSEG00000002010)	ENSCSEG00000002004	vmp1 (ENSCSEG00000001998)	tubd1 (ENSCSEG00000001994)	rps6kb1b (ENSCSEG00000001890) ##22	slc33a1 (ENSCSEG00000001853)	gmps (ENSCSEG00000001844)	ENSCSEG00000001836	kcnab1a (ENSCSEG00000001804)	ssr3 (ENSCSEG00000001801)	TIPARP (ENSCSEG00000001795)	ENSCSEG00000001792	ENSCSEG00000001790	ccnl1a (ENSCSEG00000001787)	PTX3 (ENSCSEG00000001784)	veph1 (ENSCSEG00000001780)	ENSCSEG00000001775	ENSCSEG00000001772	ENSCSEG00000001766	serpini1 (ENSCSEG00000001765)
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000160751
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000156017.fb	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284	ENSGT00940000163043
Aplocheiloidei	ANCESTRAL SPECIES	50	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000156017.fb	ENSGT00530000064267	ENSGT00940000165905	ENSGT00940000159847	ENSGT01030000235087	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l
Mangrove rivulus	MODERN SPECIES	51	SACS (ENSKMAG00000000970)	tnfrsf19 (ENSKMAG00000000938)	MIPEP (ENSKMAG00000000843)	ENSKMAG00000000800	GET1 (ENSKMAG00000000772)	SH3BGRL (ENSKMAG00000000741)	PCP4 (ENSKMAG00000000723)	DSCAM (ENSKMAG00000000525)	bace2 (ENSKMAG00000000463)	ENSKMAG00000000451	ENSKMAG00000000424	ENSKMAG00000000398	ENSKMAG00000000385	vmp1 (ENSKMAG00000000301)	tubd1 (ENSKMAG00000000289)	rps6kb1b (ENSKMAG00000000145) ##22	slc33a1 (ENSKMAG00000020878)	gmps (ENSKMAG00000020846)	ENSKMAG00000020819	KCNAB1 (ENSKMAG00000020762)	ssr3 (ENSKMAG00000020716)	TIPARP (ENSKMAG00000020703)	ccnl1a (ENSKMAG00000020652)	PTX3 (ENSKMAG00000020630)	veph1 (ENSKMAG00000020613)
Turquoise killifish	MODERN SPECIES	1615	get1 (ENSNFUG00015016763)	SH3BGR (ENSNFUG00015016727)	ENSNFUG00015016722	ENSNFUG00015016718	ENSNFUG00015016717	ENSNFUG00015016711	DSCAM (ENSNFUG00015015815)	ENSNFUG00015015573	ENSNFUG00015015567	bace2 (ENSNFUG00015015535)	Nfu_g_1_000287 (ENSNFUG00015015419)	ENSNFUG00015015401	VMP1 (ENSNFUG00015015209)	TUBD1 (ENSNFUG00015015119)	ENSNFUG00015015086	rps6kb1b (ENSNFUG00015014003) ##22	SLC33A1 (ENSNFUG00015013943)	GMPS (ENSNFUG00015013903)	ENSNFUG00015013867	ccnl1a (ENSNFUG00015013461)	ENSNFUG00015013420	ENSNFUG00015013416	PTX3 (ENSNFUG00015013412)	VEPH (ENSNFUG00015013400)	ENSNFUG00015013390	SMIM8 (ENSNFUG00015013382)	DDX51 (ENSNFUG00015013353)	ENSNFUG00015013344	ENSNFUG00015013333	CABZ01080599.1 (ENSNFUG00015013324)	ENSNFUG00015013321
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284	ENSGT00940000167407
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00940000159847	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284	ENSGT00940000167407
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284
NAME_6	ANCESTRAL SPECIES	71	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00940000165905	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368.p.a
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1905											ATM (ENSPLAG00000015692)	ENSPLAG00000015720	vmp1 (ENSPLAG00000015757)	tubd1 (ENSPLAG00000015794)	rps6kb1b (ENSPLAG00000015812) ##22	rps6kb1b (ENSPLAG00000015842) ##22	slc33a1 (ENSPLAG00000015875)	gmps (ENSPLAG00000015928)	ENSPLAG00000015967
Sailfin molly	MODERN SPECIES	1905												ATM (ENSPLAG00000015692)	ENSPLAG00000015720	vmp1 (ENSPLAG00000015757)	tubd1 (ENSPLAG00000015794)	rps6kb1b (ENSPLAG00000015812) ##22	rps6kb1b (ENSPLAG00000015842) ##22	slc33a1 (ENSPLAG00000015875)	gmps (ENSPLAG00000015928)	ENSPLAG00000015967
Amazon molly	MODERN SPECIES	619					ENSPFOG00000021806	get1 (ENSPFOG00000008133)	sh3bgr (ENSPFOG00000008082)	ENSPFOG00000008069	DSCAM (ENSPFOG00000006723)	bace2 (ENSPFOG00000006331)	TMPRSS2 (ENSPFOG00000022474)	ATM (ENSPFOG00000005882)	ENSPFOG00000005842	vmp1 (ENSPFOG00000005645)	tubd1 (ENSPFOG00000005581)	rps6kb1b (ENSPFOG00000005577) ##22	slc33a1 (ENSPFOG00000005401)	gmps (ENSPFOG00000005179)	ENSPFOG00000004893	kcnab1a (ENSPFOG00000004612)	ssr3 (ENSPFOG00000004548)	tiparp (ENSPFOG00000004540)
Guppy	MODERN SPECIES	443	ENSPREG00000016062	timm8b (ENSPREG00000016068)	sdhdb (ENSPREG00000016080)	ENSPREG00000016094	TNFRSF19 (ENSPREG00000016118)	MIPEP (ENSPREG00000016159)	BRWD1 (ENSPREG00000016228)	get1 (ENSPREG00000016282)	sh3bgr (ENSPREG00000016297)	DSCAM (ENSPREG00000016331)	bace2 (ENSPREG00000016445)	ATM (ENSPREG00000016478)	ENSPREG00000016529	vmp1 (ENSPREG00000016550)	tubd1 (ENSPREG00000016574)	rps6kb1b (ENSPREG00000016611) ##22	slc33a1 (ENSPREG00000016678)	gmps (ENSPREG00000016715)	ENSPREG00000016759	KCNAB1 (ENSPREG00000016824)	ssr3 (ENSPREG00000016878)	TIPARP (ENSPREG00000016895)	ENSPREG00000016911	ccnl1a (ENSPREG00000016928)	veph1 (ENSPREG00000016977)	PTX3 (ENSPREG00000017014)	ENSPREG00000017027	ENSPREG00000017052	serpini1 (ENSPREG00000017073)	ENSPREG00000017109	ENSPREG00000017185
Platyfish	MODERN SPECIES	9	rps25 (ENSXMAG00000001136)	sgcg (ENSXMAG00000001141)	SACS (ENSXMAG00000001161)	tnfrsf19 (ENSXMAG00000001169)	MIPEP (ENSXMAG00000001178)	ENSXMAG00000026478	get1 (ENSXMAG00000024681)	sh3bgr (ENSXMAG00000021184)	PCP4 (ENSXMAG00000023518)	DSCAM (ENSXMAG00000016834)	bace2 (ENSXMAG00000016905)	ATM (ENSXMAG00000016925)	ENSXMAG00000022466	vmp1 (ENSXMAG00000029668)	tubd1 (ENSXMAG00000016973)	rps6kb1b (ENSXMAG00000024330) ##22	slc33a1 (ENSXMAG00000017004)	gmps (ENSXMAG00000017018)	ENSXMAG00000017051	KCNAB1 (ENSXMAG00000021396)	ssr3 (ENSXMAG00000017141)	TIPARP (ENSXMAG00000022705)	ENSXMAG00000024244	ccnl1a (ENSXMAG00000025483)	veph1 (ENSXMAG00000017171)	PTX3 (ENSXMAG00000017185)	ENSXMAG00000017189	ENSXMAG00000017194	serpini1 (ENSXMAG00000017196)	ENSXMAG00000017223	ENSXMAG00000029864
NAME_4	ANCESTRAL SPECIES	48								ENSGT00530000064267	ENSGT00940000154678.a.a.e	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284	ENSGT00940000163043
Sheepshead minnow	MODERN SPECIES	136	ENSCVAG00000014311	ENSCVAG00000014304	mvp (ENSCVAG00000014286)	CASKIN2 (ENSCVAG00000000360)	ST6GALNAC2 (ENSCVAG00000014197)	ENSCVAG00000000357	ENSCVAG00000014174	DSCAM (ENSCVAG00000014165)	bace2 (ENSCVAG00000014157)	ENSCVAG00000014136	ENSCVAG00000014064	ENSCVAG00000014053	ENSCVAG00000014039	vmp1 (ENSCVAG00000014027)	tubd1 (ENSCVAG00000013974)	rps6kb1b (ENSCVAG00000013927) ##22	slc33a1 (ENSCVAG00000013855)	gmps (ENSCVAG00000013802)	ENSCVAG00000013745
Mummichog	MODERN SPECIES	2337							ENSFHEG00000022635	DSCAM (ENSFHEG00000022730)	bace2 (ENSFHEG00000022744)	ENSFHEG00000022763	ENSFHEG00000022784	ENSFHEG00000022810	ENSFHEG00000022823	vmp1 (ENSFHEG00000022833)	tubd1 (ENSFHEG00000022865)	rps6kb1b (ENSFHEG00000022944) ##22	slc33a1 (ENSFHEG00000022958)	gmps (ENSFHEG00000023029)	ENSFHEG00000023083	KCNAB1 (ENSFHEG00000023223)	ssr3 (ENSFHEG00000001489)	TIPARP (ENSFHEG00000001493)	ENSFHEG00000001495	ccnl1a (ENSFHEG00000000052)	PTX3 (ENSFHEG00000001511)	veph1 (ENSFHEG00000001515)	ENSFHEG00000001523	ENSFHEG00000001527	serpini1 (ENSFHEG00000001535)
Oryzias	ANCESTRAL SPECIES	8	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00980000198612	ENSGT00940000165905	ENSGT00940000159847	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000178902	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Oryzias_b	ANCESTRAL SPECIES	14						ENSGT00940000159847	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000178902	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000160751
Indian medaka	MODERN SPECIES	12	fli1 (ENSOMEG00000005553)	ets1 (ENSOMEG00000005506)	smtla (ENSOMEG00000005457)	ENSOMEG00000005443	KIRREL3 (ENSOMEG00000005416)	BARX2 (ENSOMEG00000005335)	rbm7 (ENSOMEG00000000117)	DSCAM (ENSOMEG00000005263)	bace2 (ENSOMEG00000005121)	ENSOMEG00000005097	ENSOMEG00000005080	ENSOMEG00000005072	ENSOMEG00000000658	vmp1 (ENSOMEG00000005037)	tubd1 (ENSOMEG00000005007)	rps6kb1b (ENSOMEG00000004988) ##22	slc33a1 (ENSOMEG00000004961)	ENSOMEG00000000107	gmps (ENSOMEG00000004911)	ENSOMEG00000004875	KCNAB1 (ENSOMEG00000004823)	ssr3 (ENSOMEG00000004731)	TIPARP (ENSOMEG00000004712)	ENSOMEG00000004695	ccnl1a (ENSOMEG00000004676)	veph1 (ENSOMEG00000004616)	PTX3 (ENSOMEG00000004580)	ENSOMEG00000004575	ENSOMEG00000004565	ENSOMEG00000004503	serpini1 (ENSOMEG00000004490)
Javanese ricefish	MODERN SPECIES	4	samsn1a (ENSOJAG00000003575)	DHX40 (ENSOJAG00000003692)	akt2 (ENSOJAG00000004323)	ccnp (ENSOJAG00000004617)	si:ch211-132b12.2 (ENSOJAG00000004671)	ENSOJAG00000004824	sh3bgr (ENSOJAG00000004847)	ENSOJAG00000004912	DSCAM (ENSOJAG00000004963)	bace2 (ENSOJAG00000005226)	ENSOJAG00000005284	ENSOJAG00000005295	ENSOJAG00000005355	vmp1 (ENSOJAG00000005368)	tubd1 (ENSOJAG00000005491)	rps6kb1b (ENSOJAG00000005562) ##22	slc33a1 (ENSOJAG00000006317)	gmps (ENSOJAG00000006419)	KCNAB1 (ENSOJAG00000007464)	ssr3 (ENSOJAG00000007577)	TIPARP (ENSOJAG00000007617)	ENSOJAG00000007626	ccnl1a (ENSOJAG00000007650)	veph1 (ENSOJAG00000007679)	PTX3 (ENSOJAG00000007708)	ENSOJAG00000007721	ENSOJAG00000007736	serpini1 (ENSOJAG00000007758)	ENSOJAG00000007894	ENSOJAG00000008161	SLITRK3 (ENSOJAG00000009670)
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00980000198612	ENSGT00940000165905	ENSGT00940000159847	ENSGT00530000064267	ENSGT00940000154678.a.a.c	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT01030000235461	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00940000171284
Japanese Medaka HdrR	MODERN SPECIES	4	MIPEP (ENSORLG00000012997)	ENSORLG00000024206	ENSORLG00000024611	get1 (ENSORLG00000012945)	sh3bgr (ENSORLG00000012924)	ENSORLG00000029158	ENSORLG00000024531	PCP4 (ENSORLG00000029260)	ENSORLG00000012892	bace2 (ENSORLG00000012838)	ENSORLG00000030057	ENSORLG00000027668	ENSORLG00000012728	vmp1 (ENSORLG00000012702)	tubd1 (ENSORLG00000012665)	rps6kb1b (ENSORLG00000012636) ##22	slc33a1 (ENSORLG00000012608)	gmps (ENSORLG00000012593)	ENSORLG00000012554	KCNAB1 (ENSORLG00000012536)	ssr3 (ENSORLG00000012523)	ENSORLG00000025556	TIPARP (ENSORLG00000023309)	ENSORLG00000029262	ENSORLG00000025029	ENSORLG00000027313	ccnl1a (ENSORLG00000012502)	PTX3 (ENSORLG00000026149)	veph1 (ENSORLG00000012452)	ENSORLG00000012393	ENSORLG00000024315
Chinese medaka	MODERN SPECIES	337											ENSOSIG00000006501	ENSOSIG00000006502	vmp1 (ENSOSIG00000006507)	ENSOSIG00000006628	tubd1 (ENSOSIG00000006631)	rps6kb1b (ENSOSIG00000006671) ##22	slc33a1 (ENSOSIG00000009159)	gmps (ENSOSIG00000009190)	ENSOSIG00000010402	ENSOSIG00000010408	KCNAB1 (ENSOSIG00000010651)	ssr3 (ENSOSIG00000011858)	ENSOSIG00000011859	TIPARP (ENSOSIG00000011861)	ccnl1a (ENSOSIG00000011867)	veph1 (ENSOSIG00000011873)
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000178902	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Clown anemonefish	MODERN SPECIES	3409	tnfrsf19 (ENSAOCG00000024121)	MIPEP (ENSAOCG00000024152)	BRWD1 (ENSAOCG00000024196)	GET1 (ENSAOCG00000024215)	ENSAOCG00000003106	SH3BGRL (ENSAOCG00000000079)	ENSAOCG00000003134	PCP4 (ENSAOCG00000003144)	DSCAM (ENSAOCG00000003164)	bace2 (ENSAOCG00000003180)	ENSAOCG00000003194	ATM (ENSAOCG00000003225)	ENSAOCG00000003237	vmp1 (ENSAOCG00000003247)	tubd1 (ENSAOCG00000003256)	rps6kb1b (ENSAOCG00000003270) ##22	slc33a1 (ENSAOCG00000003278)	gmps (ENSAOCG00000003292)	ENSAOCG00000003302	kcnab1a (ENSAOCG00000003317)	ssr3 (ENSAOCG00000003325)	TIPARP (ENSAOCG00000003328)	ENSAOCG00000003337	ENSAOCG00000002693	ccnl1a (ENSAOCG00000003345)
Orange clownfish	MODERN SPECIES	23	SACS (ENSAPEG00000021169)	tnfrsf19 (ENSAPEG00000021145)	MIPEP (ENSAPEG00000021052)	BRWD1 (ENSAPEG00000020945)	GET1 (ENSAPEG00000020919)	sh3bgr (ENSAPEG00000020837)	ENSAPEG00000020792	PCP4 (ENSAPEG00000020783)	DSCAM (ENSAPEG00000020708)	bace2 (ENSAPEG00000020666)	ENSAPEG00000020652	ATM (ENSAPEG00000020503)	ENSAPEG00000020478	vmp1 (ENSAPEG00000020424)	tubd1 (ENSAPEG00000020380)	rps6kb1b (ENSAPEG00000020308) ##22	slc33a1 (ENSAPEG00000020265)	gmps (ENSAPEG00000020189)	ENSAPEG00000020169	kcnab1a (ENSAPEG00000020132)	ssr3 (ENSAPEG00000020109)	TIPARP (ENSAPEG00000020094)	ENSAPEG00000020089	ccnl1a (ENSAPEG00000020021)	PTX3 (ENSAPEG00000020003)	veph1 (ENSAPEG00000019966)	ENSAPEG00000019942	ENSAPEG00000019910	ENSAPEG00000019874	serpini1 (ENSAPEG00000019861)	pdcd10a (ENSAPEG00000019821)
Spiny chromis	MODERN SPECIES	284	sgcg (ENSAPOG00000012872)	SACS (ENSAPOG00000012936)	tnfrsf19 (ENSAPOG00000012968)	MIPEP (ENSAPOG00000013090)	ENSAPOG00000013130	GET1 (ENSAPOG00000013162)	sh3bgr (ENSAPOG00000013215)	PCP4 (ENSAPOG00000013232)	DSCAM (ENSAPOG00000013397)	bace2 (ENSAPOG00000013476)	TMPRSS2 (ENSAPOG00000013509)	ATM (ENSAPOG00000014196)	ENSAPOG00000014237	vmp1 (ENSAPOG00000014312)	tubd1 (ENSAPOG00000014374)	rps6kb1b (ENSAPOG00000014469) ##22	slc33a1 (ENSAPOG00000014524)
Bicolor damselfish	MODERN SPECIES	298	tnfrsf19 (ENSSPAG00000016259)	MIPEP (ENSSPAG00000016280)	ENSSPAG00000016327	ENSSPAG00000016375	get1 (ENSSPAG00000016386)	SH3BGRL (ENSSPAG00000016427)	ENSSPAG00000016519	PCP4 (ENSSPAG00000016538)	DSCAM (ENSSPAG00000016558)	bace2 (ENSSPAG00000016639)	ENSSPAG00000016672	ATM (ENSSPAG00000016715)	ENSSPAG00000017062	vmp1 (ENSSPAG00000017088)	tubd1 (ENSSPAG00000017131)	rps6kb1b (ENSSPAG00000017178) ##22	slc33a1 (ENSSPAG00000017251)	gmps (ENSSPAG00000017294)	ENSSPAG00000017345	kcnab1a (ENSSPAG00000017381)	ssr3 (ENSSPAG00000017403)	TIPARP (ENSSPAG00000017423)	ENSSPAG00000017439	ccnl1a (ENSSPAG00000017459)
Cichlidae	ANCESTRAL SPECIES	25	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT01030000236803	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Haplochromini	ANCESTRAL SPECIES	33	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000159847	ENSGT01030000236803	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
Burton s mouthbrooder	MODERN SPECIES	304									ENSHBUG00000006435	ENSHBUG00000006425	ENSHBUG00000006418	ENSHBUG00000006402	ENSHBUG00000006378	vmp1 (ENSHBUG00000006342)	tubd1 (ENSHBUG00000006291)	rps6kb1b (ENSHBUG00000006264) ##22	slc33a1 (ENSHBUG00000006210)	gmps (ENSHBUG00000000946)	ENSHBUG00000006145	kcnab1a (ENSHBUG00000006103)	ssr3 (ENSHBUG00000006051)	TIPARP (ENSHBUG00000001162)	ENSHBUG00000006024	ccnl1a (ENSHBUG00000006011)	veph1 (ENSHBUG00000005977)	PTX3 (ENSHBUG00000005964)	ENSHBUG00000005954	ENSHBUG00000005939	ENSHBUG00000005934	serpini1 (ENSHBUG00000005921)	pdcd10a (ENSHBUG00000005860)
Haplochromini_A	ANCESTRAL SPECIES	20	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT01030000236803	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00940000172904	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00390000000970	ENSGT00940000155368.bb	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.`b.a
P. nyererei	MODERN SPECIES	298	SACS (ENSPNYG00000011559)	TNFRSF19 (ENSPNYG00000011535)	MIPEP (ENSPNYG00000011479)	BRWD1 (ENSPNYG00000011393)	GET1 (ENSPNYG00000011363)	sh3bgr (ENSPNYG00000011342)	ENSPNYG00000011328	DSCAM (ENSPNYG00000011266)	bace2 (ENSPNYG00000011236)	ATM (ENSPNYG00000011075)	ENSPNYG00000011035	ENSPNYG00000011010	vmp1 (ENSPNYG00000010976)	tubd1 (ENSPNYG00000010942)	ENSPNYG00000010930	rps6kb1b (ENSPNYG00000010910) ##22	slc33a1 (ENSPNYG00000010862)	gmps (ENSPNYG00000010788)	ENSPNYG00000010752	kcnab1a (ENSPNYG00000010724)	ssr3 (ENSPNYG00000010708)	TIPARP (ENSPNYG00000010697)	ENSPNYG00000010684	ccnl1a (ENSPNYG00000010611)	PTX3 (ENSPNYG00000010607)	veph1 (ENSPNYG00000010566)	ENSPNYG00000010528	ENSPNYG00000010502	ENSPNYG00000010480	serpini1 (ENSPNYG00000010454)	pdcd10a (ENSPNYG00000010422)
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT01030000236803	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00940000154019.a	ENSGT00390000006591	ENSGT00940000160473	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00390000000970	ENSGT00940000155368.bb	ENSGT00990000203825	ENSGT00940000159135	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000163939	ENSGT00940000164637	ENSGT00390000015980	ENSGT00940000158168
Eastern happy	MODERN SPECIES	5	MIPEP (ENSACLG00000002037)	BRWD1 (ENSACLG00000002135)	GET1 (ENSACLG00000002274)	ENSACLG00000002305	ENSACLG00000002318	ENSACLG00000002366	PCP4 (ENSACLG00000002377)	DSCAM (ENSACLG00000002566)	bace2 (ENSACLG00000002738)	ENSACLG00000002745	ENSACLG00000002762	ENSACLG00000002780	ENSACLG00000002815	vmp1 (ENSACLG00000002866)	tubd1 (ENSACLG00000002918)	rps6kb1b (ENSACLG00000002988) ##22	slc33a1 (ENSACLG00000003045)	gmps (ENSACLG00000003086)	ENSACLG00000003138	KCNAB1 (ENSACLG00000003199)	ENSACLG00000003251	ssr3 (ENSACLG00000003278)	TIPARP (ENSACLG00000003294)	ENSACLG00000003336	ccnl1a (ENSACLG00000003702)	veph1 (ENSACLG00000003779)	ENSACLG00000003799	PTX3 (ENSACLG00000003802)	ENSACLG00000003814	ENSACLG00000003825	ENSACLG00000003853
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005012643	ENSMZEG00005012605	DSCAM (ENSMZEG00005012544)	ENSMZEG00005012519	ENSMZEG00005012508	ENSMZEG00005012501	bace2 (ENSMZEG00005012481)	ENSMZEG00005012462	ENSMZEG00005012458	bace2 (ENSMZEG00005012442)	ENSMZEG00005012426	ENSMZEG00005012408	ENSMZEG00005012387	vmp1 (ENSMZEG00005012351)	tubd1 (ENSMZEG00005012335)	rps6kb1b (ENSMZEG00005012294) ##22	slc33a1 (ENSMZEG00005012250)	gmps (ENSMZEG00005012210)	ENSMZEG00005012186	kcnab1a (ENSMZEG00005011156)	ssr3 (ENSMZEG00005011142)	TIPARP (ENSMZEG00005011128)	ENSMZEG00005011115	ccnl1a (ENSMZEG00005011094)	PTX3 (ENSMZEG00005011083)	veph1 (ENSMZEG00005011041)	ENSMZEG00005011024	ENSMZEG00005011004	ENSMZEG00005010991	serpini1 (ENSMZEG00005010980)	pdcd10a (ENSMZEG00005010953)
Lyretail cichlid	MODERN SPECIES	357	SACS (ENSNBRG00000001180)	tnfrsf19 (ENSNBRG00000001209)	MIPEP (ENSNBRG00000001216)	ENSNBRG00000001310	ENSNBRG00000001325	GET1 (ENSNBRG00000001335)	sh3bgr (ENSNBRG00000001356)	ENSNBRG00000001365	DSCAM (ENSNBRG00000001377)	bace2 (ENSNBRG00000001509)	ENSNBRG00000001548	ENSNBRG00000001564	ENSNBRG00000001584	vmp1 (ENSNBRG00000001690)	tubd1 (ENSNBRG00000001764)	rps6kb1b (ENSNBRG00000001797) ##22	slc33a1 (ENSNBRG00000001875)	gmps (ENSNBRG00000001913)	ENSNBRG00000001977	kcnab1a (ENSNBRG00000002042)	ssr3 (ENSNBRG00000002077)	tiparp (ENSNBRG00000002101)	ENSNBRG00000002119	ccnl1a (ENSNBRG00000002147)	veph1 (ENSNBRG00000002195)	PTX3 (ENSNBRG00000002253)	ENSNBRG00000002274	ENSNBRG00000002301	ENSNBRG00000002317	ENSNBRG00000002351	serpini1 (ENSNBRG00000002372)
Nile tilapia	MODERN SPECIES	5	sgcg (ENSONIG00000005441)	SACS (ENSONIG00000005444)	tnfrsf19 (ENSONIG00000005447)	MIPEP (ENSONIG00000005451)	BRWD1 (ENSONIG00000005455)	WRB (ENSONIG00000005465)	sh3bgr (ENSONIG00000039028)	ENSONIG00000032616	ENSONIG00000028558	DSCAM (ENSONIG00000005472)	bace2 (ENSONIG00000005485)	ATM (ENSONIG00000005496)	ENSONIG00000005503	vmp1 (ENSONIG00000005506)	tubd1 (ENSONIG00000005513)	rps6kb1b (ENSONIG00000005515) ##22	slc33a1 (ENSONIG00000005517)	gmps (ENSONIG00000005518)	ENSONIG00000005521	KCNAB1 (ENSONIG00000005523)	ssr3 (ENSONIG00000005536)	tiparp (ENSONIG00000036070)	ENSONIG00000026707	ccnl1a (ENSONIG00000005540)	ENSONIG00000041653	PTX3 (ENSONIG00000037163)	veph1 (ENSONIG00000005544)	pqlc2l (ENSONIG00000005546)	ENSONIG00000005548	ENSONIG00000032201	serpini1 (ENSONIG00000005552)
Midas cichlid	MODERN SPECIES	1082		tnfrsf19 (ENSACIG00000011787)	MIPEP (ENSACIG00000011826)	ENSACIG00000012030	get1 (ENSACIG00000012099)	sh3bgr (ENSACIG00000012110)	ENSACIG00000012122	DSCAM (ENSACIG00000012139)	bace2 (ENSACIG00000012213)	ENSACIG00000012252	ENSACIG00000012260	ENSACIG00000012273	vmp1 (ENSACIG00000012291)	tubd1 (ENSACIG00000012321)	ENSACIG00000012364	rps6kb1b (ENSACIG00000012381) ##22	slc33a1 (ENSACIG00000012418)	gmps (ENSACIG00000012452)	ENSACIG00000012494	KCNAB1 (ENSACIG00000012518)	ssr3 (ENSACIG00000012559)	tiparp (ENSACIG00000012575)	ENSACIG00000012602	ccnl1a (ENSACIG00000012628)	veph1 (ENSACIG00000012800)	PTX3 (ENSACIG00000012845)	ENSACIG00000012874	golim4a (ENSACIG00000012889)	ENSACIG00000012902	ENSACIG00000012939	serpini1 (ENSACIG00000012958)
Tiger tail seahorse	MODERN SPECIES	111	tnfrsf19 (ENSHCOG00000011223)	MIPEP (ENSHCOG00000011277)	ENSHCOG00000011328	ENSHCOG00000011348	GET1 (ENSHCOG00000011367)	sh3bgr (ENSHCOG00000011431)	ENSHCOG00000011448	DSCAM (ENSHCOG00000011496)	bace2 (ENSHCOG00000011505)	TMPRSS2 (ENSHCOG00000011555)	ENSHCOG00000011572	ENSHCOG00000011601	ENSHCOG00000011606	vmp1 (ENSHCOG00000011637)	tubd1 (ENSHCOG00000011655)	rps6kb1b (ENSHCOG00000011708) ##22	slc33a1 (ENSHCOG00000011734)	gmps (ENSHCOG00000011768)	ENSHCOG00000011815	kcnab1a (ENSHCOG00000011840)	KCNAB1 (ENSHCOG00000011865)	ssr3 (ENSHCOG00000011884)	TIPARP (ENSHCOG00000011891)	ENSHCOG00000011900	ccnl1a (ENSHCOG00000011929)	PTX3 (ENSHCOG00000011996)	veph1 (ENSHCOG00000012032)	ENSHCOG00000012043	ENSHCOG00000012055	serpini1 (ENSHCOG00000012118)	pdcd10a (ENSHCOG00000012152)
Cod	MODERN SPECIES	7	ENSGMOG00000008714	MIPEP (ENSGMOG00000008729)	BRWD1 (ENSGMOG00000033322)	ENSGMOG00000008777	sh3bgr (ENSGMOG00000008783)	ENSGMOG00000008789	PCP4 (ENSGMOG00000026737)	ENSGMOG00000033004	ENSGMOG00000036534	ENSGMOG00000008806	bace2 (ENSGMOG00000008848)	ENSGMOG00000008875	ENSGMOG00000035807	vmp1 (ENSGMOG00000008975)	ENSGMOG00000008987	rps6kb1b (ENSGMOG00000008995) ##22	slc33a1 (ENSGMOG00000009015)	gmps (ENSGMOG00000009029)	ENSGMOG00000009045	KCNAB1 (ENSGMOG00000009066)	ssr3 (ENSGMOG00000009082)	tiparp (ENSGMOG00000034698)	ENSGMOG00000009099	PTX3 (ENSGMOG00000025297)	ENSGMOG00000009109	ENSGMOG00000027732	ENSGMOG00000030358	ENSGMOG00000009158	ENSGMOG00000007093	ENSGMOG00000016151	ENSGMOG00000004207
Protacanthopterygii	ANCESTRAL SPECIES	15	ENSGT00390000016695	ENSGT00940000153259.a.a.b.g	ENSGT00390000008610.a.b.a.a.b	ENSGT00560000077266.b	ENSGT00940000156017.fb	ENSGT00940000159847	ENSGT00940000165615.b	ENSGT00530000064267	ENSGT00940000154678.a.a	ENSGT00940000159548	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388	ENSGT00390000007230.b	ENSGT00940000157069	ENSGT00940000155062.b.d.a ##22	ENSGT00390000013680.b.b	ENSGT00870000136508.c.b	ENSGT00530000063947.C.c	ENSGT00530000063516.a.a.a.b	ENSGT00940000157408.a.b	ENSGT00940000156881.g	ENSGT00940000156527.d	ENSGT00950000183068.a.b.d	ENSGT00940000166822	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.b.c.b	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00940000155457.a.b	ENSGT00940000157231.a.b	ENSGT00940000157590
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	96	ENSGT00940000159847.f.b	ENSGT00940000165615.b	ENSGT00940000159847.e	ENSGT00530000064267	ENSGT00940000154678.a.a.m.b	ENSGT00940000159548.m	ENSGT00390000012388.c	ENSGT01030000235187.b.a	ENSGT00940000154678.a.a.m.a	ENSGT00940000159548.n	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388.d	ENSGT00390000007230.b.c	ENSGT00940000157069.d	ENSGT00940000155062.b.d.a.e ##22	ENSGT00390000013680.b.b.k.a	ENSGT00940000154823.f	ENSGT00870000136508.c.b.g	ENSGT00530000063947.C.c.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063516.a.a.a.b.c	ENSGT00940000157408.a.b.d	ENSGT00940000156881.g.d	ENSGT00940000156527.d.c	ENSGT00950000183068.a.b.d.d	ENSGT00940000166822.a	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00940000155457.a.b.g	ENSGT00940000157231.a.b.c
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00950000183107.a.b.a.e.b	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00560000077266.b.p	ENSGT00940000159847.f.a.b	ENSGT00940000159847.e	ENSGT00530000064267.m	ENSGT00940000154678.a.a.m.a	ENSGT00940000159548.n	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061	ENSGT00390000012388.d	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000007230.b.c	ENSGT00940000157069.d	ENSGT00940000154203	ENSGT00940000155062.b.d.a.e ##22	ENSGT00390000013680.b.b.k.a	ENSGT00940000154823.f	ENSGT00870000136508.c.b.g	ENSGT00530000063947.C.c.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063516.a.a.a.b.c	ENSGT00940000157408.a.b.d	ENSGT00940000156881.g.d	ENSGT00940000156527.d.c	ENSGT00950000183068.a.b.d.d	ENSGT00940000166822.a	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00940000155457.a.b.g	ENSGT00940000157231.a.b.c
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000159187.k.b	ENSGT00390000016695.v	ENSGT00940000153259.a.a.b.g.a	ENSGT00950000183107.a.b.a.e.a	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00560000077266.b.p	ENSGT00940000159847.f.a.b	ENSGT00530000064267.m	ENSGT00940000154678.a.a.m.a	ENSGT00940000159548.n	ENSGT00670000098061	ENSGT00390000012388.d	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000007230.b.c	ENSGT00940000157069.d	ENSGT00940000155062.b.d.a.e ##22	ENSGT00390000013680.b.b.k.a	ENSGT00940000154823.f	ENSGT00870000136508.c.b.g	ENSGT00530000063947.C.c.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063516.a.a.a.b.c	ENSGT00940000157408.a.b.d	ENSGT00940000156881.g.d	ENSGT00940000156527.d.c	ENSGT00950000183068.a.b.d.d	ENSGT00940000166822.a	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00940000155457.a.b.g	ENSGT00940000157231.a.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	32	ENSGT00940000159187.k.b	ENSGT00390000016695.v	ENSGT00940000153259.a.a.b.g.a	ENSGT00950000183107.a.b.a.e.a	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00560000077266.b.p	ENSGT00940000159847.f.a.b	ENSGT00530000064267.m	ENSGT00940000154678.a.a.m.a	ENSGT00940000159548.n	ENSGT00670000098061	ENSGT00390000012388.d	ENSGT00940000154308.A.b.a.a.a.a.a	ENSGT00390000007230.b.c	ENSGT00940000157069.d	ENSGT00940000155062.b.d.a.e ##22	ENSGT00390000013680.b.b.k.a	ENSGT00940000154823.f	ENSGT00530000063947.C.c.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063516.a.a.a.b.c	ENSGT00940000157408.a.b.d	ENSGT00940000156881.g.d	ENSGT00940000156527.d.c	ENSGT00950000183068.a.b.d.d	ENSGT00940000166822.a	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00940000155457.a.b.g	ENSGT00940000157231.a.b.c	ENSGT00940000157590.c
Coho salmon	MODERN SPECIES	9	SACS (ENSOKIG00005022146)	TNFRSF19 (ENSOKIG00005022197)	BRWD1 (ENSOKIG00005022332)	GET1 (ENSOKIG00005024181)	LCA5L (ENSOKIG00005024205)	sh3bgr (ENSOKIG00005024237)	PCP4 (ENSOKIG00005024307)	DSCAM (ENSOKIG00005024367)	bace2 (ENSOKIG00005024749)	ATM (ENSOKIG00005024860)	ENSOKIG00005025007	ENSOKIG00005013361	ENSOKIG00005013377	ENSOKIG00005013383	VMP1 (ENSOKIG00005013392)	ENSOKIG00005013515 ##22	med13b (ENSOKIG00005013827)	ENSOKIG00005013995	ENSOKIG00005014040	DGAT2 (ENSOKIG00005014055)	thap12b (ENSOKIG00005014074)	dyrk1ab (ENSOKIG00005014090)	alcamb (ENSOKIG00005014274)	ZPLD1 (ENSOKIG00005015354)	picalmb (ENSOKIG00005015421)	ENSOKIG00005015779	HSPA8 (ENSOKIG00005015815)	lim2.3 (ENSOKIG00005015852)	ENSOKIG00005015874	ENSOKIG00005015967	ENSOKIG00005015978
Chinook salmon	MODERN SPECIES	5	tnfrsf19 (ENSOTSG00005014683)	ENSOTSG00005014611	GET1 (ENSOTSG00005014606)	ENSOTSG00005014604	sh3bgr (ENSOTSG00005014599)	ENSOTSG00005014594	DSCAM (ENSOTSG00005013132)	bace2 (ENSOTSG00005013111)	ENSOTSG00005013109	ATM (ENSOTSG00005013089)	ENSOTSG00005013070	ENSOTSG00005013069	ENSOTSG00005013068	vmp1 (ENSOTSG00005013046)	ENSOTSG00005013044	rps6kb1b (ENSOTSG00005012975) ##22	MED13 (ENSOTSG00005012848)	ENSOTSG00005012845	ENSOTSG00005012844	ENSOTSG00005012843	DGAT2 (ENSOTSG00005012842)	thap12b (ENSOTSG00005012841)	dyrk1ab (ENSOTSG00005012840)	alcamb (ENSOTSG00005012833)	ZPLD1 (ENSOTSG00005012832)	picalmb (ENSOTSG00005012322)	ENSOTSG00005012313	HSPA8 (ENSOTSG00005012311)	ENSOTSG00005012309	ENSOTSG00005012306	acad8 (ENSOTSG00005012302)
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000035526	TNFRSF19 (ENSOMYG00000035498)	BRWD1 (ENSOMYG00000035122)	GET1 (ENSOMYG00000034958)	ENSOMYG00000034950	sh3bgr (ENSOMYG00000034919)	PCP4 (ENSOMYG00000066852)	ENSOMYG00000068438	ENSOMYG00000034752	bace2 (ENSOMYG00000034678)	ENSOMYG00000034665	ENSOMYG00000034525	ENSOMYG00000034295	ENSOMYG00000034276	ENSOMYG00000034026	ENSOMYG00000033692 ##22	med13b (ENSOMYG00000030822)	ENSOMYG00000030177	zgc:112083 (ENSOMYG00000030130)	ENSOMYG00000030116	thap12b (ENSOMYG00000030080)	dyrk1ab (ENSOMYG00000029887)	alcamb (ENSOMYG00000029148)	ENSOMYG00000028755	ENSOMYG00000049793	picalmb (ENSOMYG00000028120)	ENSOMYG00000027808	ENSOMYG00000027697	lim2.3 (ENSOMYG00000027638)	ENSOMYG00000027603	ENSOMYG00000027575
Salmo	ANCESTRAL SPECIES	22	ENSGT00940000153259.a.a.b.g.a	ENSGT00950000183107.a.b.a.e.a	ENSGT00390000008610.a.b.a.a.b.a	ENSGT00560000077266.b.p	ENSGT00940000159847.e	ENSGT00530000064267.m	ENSGT00940000154678.a.a.m.a	ENSGT00940000159548.n	ENSGT00940000155207.a.b.i.b	ENSGT00670000098061.ec	ENSGT00390000012388.d	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000007230.b.c	ENSGT00940000157069.d	ENSGT00940000154203	ENSGT00940000155062.b.d.a.e ##22	ENSGT00390000013680.b.b.k.a	ENSGT00940000154823.f	ENSGT00870000136508.c.b.g	ENSGT00530000063947.C.c.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063516.a.a.a.b.c	ENSGT00940000157408.a.b.d	ENSGT00940000156881.g.d	ENSGT00940000156527.d.c	ENSGT00950000183068.a.b.d.d	ENSGT00940000166822.a	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00940000155457.a.b.g	ENSGT00940000157231.a.b.c
River trout	MODERN SPECIES	4	SACS (ENSSTUG00000030213)	tnfrsf19 (ENSSTUG00000030193)	BRWD1 (ENSSTUG00000029657)	GET1 (ENSSTUG00000029614)	ENSSTUG00000029610	sh3bgr (ENSSTUG00000029565)	PCP4 (ENSSTUG00000029546)	DSCAM (ENSSTUG00000049801)	bace2 (ENSSTUG00000049778)	TMPRSS2 (ENSSTUG00000049766)	ATM (ENSSTUG00000048910)	ENSSTUG00000048847	ENSSTUG00000048843	vmp1 (ENSSTUG00000048793)	tubd1 (ENSSTUG00000048781)	rps6kb1b (ENSSTUG00000048572) ##22	med13b (ENSSTUG00000047840)	ENSSTUG00000047778	zgc:112083 (ENSSTUG00000047772)	ENSSTUG00000047771	DGAT2 (ENSSTUG00000047767)	thap12b (ENSSTUG00000047763)	dyrk1ab (ENSSTUG00000047725)	alcamb (ENSSTUG00000047456)	ZPLD1 (ENSSTUG00000047423)	picalmb (ENSSTUG00000047043)	ENSSTUG00000046985	ENSSTUG00000046963	lim2.3 (ENSSTUG00000046958)	ENSSTUG00000046504	ENSSTUG00000046462
Huchen	MODERN SPECIES	646					ENSHHUG00000041865	ENSHHUG00000041872	bace2 (ENSHHUG00000041902)	ENSHHUG00000041920	ATM (ENSHHUG00000041950)	ENSHHUG00000041994	ENSHHUG00000042012	ENSHHUG00000042013	ENSHHUG00000042026	vmp1 (ENSHHUG00000042032)	tubd1 (ENSHHUG00000042054)	rps6kb1b (ENSHHUG00000042066) ##22	med13b (ENSHHUG00000042143)	ENSHHUG00000042515	zgc:112083 (ENSHHUG00000042534)	ENSHHUG00000042547	ENSHHUG00000042572	thap12b (ENSHHUG00000042575)	dyrk1ab (ENSHHUG00000042582)	alcamb (ENSHHUG00000042593)	ZPLD1 (ENSHHUG00000042720)	picalmb (ENSHHUG00000042750)	ENSHHUG00000042808	ENSHHUG00000042836	lim2.3 (ENSHHUG00000044460)	ENSHHUG00000044471	ENSHHUG00000044692
Salmoninae	ANCESTRAL SPECIES	1057														ENSGT00390000007230.b.d	ENSGT00940000157069.c	ENSGT00940000155062.b.d.a.f ##22	ENSGT00390000013680.b.b.k.b	ENSGT00870000136508.c.b.h
Salmoninae_a	ANCESTRAL SPECIES	19							ENSGT00560000077266.b.o	ENSGT00940000159847.f.b	ENSGT00940000165615.b	ENSGT00530000064267.n	ENSGT00940000154678.a.a.m.b	ENSGT00940000159548.m	ENSGT00390000012388.c	ENSGT00390000007230.b.d	ENSGT00940000157069.c	ENSGT00940000155062.b.d.a.f ##22	ENSGT00390000013680.b.b.k.b	ENSGT00870000136508.c.b.h	ENSGT00530000063947.C.c.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00940000158413.a.a	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000157408.a.b.c	ENSGT00940000156881.g.c	ENSGT00940000156527.d.d	ENSGT00950000183068.a.b.d.c	ENSGT00940000166822.b	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00940000155457.a.b.h
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00940000159187.k.a	ENSGT00390000016695.u	ENSGT00940000153259.a.a.b.g.b	ENSGT00950000183107.a.b.a.e.b	ENSGT00940000165905	ENSGT00940000159847.f.a.a	ENSGT00560000077266.b.o	ENSGT00940000156017.fb	ENSGT00940000165615.b	ENSGT00530000064267.n	ENSGT00940000154678.a.a.m.b	ENSGT00940000159548.m	ENSGT00390000012388.c	ENSGT00390000007230.b.d	ENSGT00940000157069.c	ENSGT00940000155062.b.d.a.f ##22	ENSGT00390000013680.b.b.k.b	ENSGT00870000136508.c.b.h	ENSGT00530000063947.C.c.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000157408.a.b.c	ENSGT00940000156881.g.c	ENSGT00940000156527.d.d	ENSGT00950000183068.a.b.d.c	ENSGT00940000166822.b	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00940000155457.a.b.h	ENSGT00940000157231.a.b.d
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT00390000016695.u	ENSGT00940000153259.a.a.b.g.b	ENSGT00950000183107.a.b.a.e.b	ENSGT00940000165905	ENSGT00560000077266.b.o	ENSGT00940000156017.fb	ENSGT00940000159847.f.a.a	ENSGT00940000165615.b	ENSGT01030000235187.b.b	ENSGT00940000154678.a.a.m.b	ENSGT00940000159548.m	ENSGT00390000012388.c	ENSGT00940000154308.A.b.a.a.a.a.b	ENSGT00390000007230.b.d	ENSGT00940000157069.c	ENSGT00940000155062.b.d.a.f ##22	ENSGT00390000013680.b.b.k.b	ENSGT00870000136508.c.b.h	ENSGT00530000063947.C.c.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000157408.a.b.c	ENSGT00940000156881.g.c	ENSGT00940000156527.d.d	ENSGT00950000183068.a.b.d.c	ENSGT00940000166822.b	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00940000155457.a.b.h	ENSGT00940000157231.a.b.d
Chinook salmon	MODERN SPECIES	4	SACS (ENSOTSG00005002699)	tnfrsf19 (ENSOTSG00005002694)	ENSOTSG00005002691	MIPEP (ENSOTSG00005001720)	ENSOTSG00005001688	get1 (ENSOTSG00005001681)	sh3bgr (ENSOTSG00005044963)	ENSOTSG00005044962	ENSOTSG00005044961	DSCAM (ENSOTSG00005044816)	bace2 (ENSOTSG00005044809)	ENSOTSG00005044807	ENSOTSG00005044802	vmp1 (ENSOTSG00005044790)	tubd1 (ENSOTSG00005044787)	rps6kb1b (ENSOTSG00005044037) ##22	med13b (ENSOTSG00005043675)	zgc:112083 (ENSOTSG00005043668)	ENSOTSG00005043667	thap12b (ENSOTSG00005043666)	dyrk1ab (ENSOTSG00005043665)	alcamb (ENSOTSG00005043663)	ZPLD1 (ENSOTSG00005043656)	picalmb (ENSOTSG00005043652)	ENSOTSG00005043650	ENSOTSG00005043649	ENSOTSG00005043648	HSPA8 (ENSOTSG00005043511)	lim2.3 (ENSOTSG00005043510)	ENSOTSG00005043509	ENSOTSG00005043508
Coho salmon	MODERN SPECIES	6	SACS (ENSOKIG00005030615)	TNFRSF19 (ENSOKIG00005030602)	MIPEP (ENSOKIG00005029922)	ENSOKIG00005029161	get1 (ENSOKIG00005029110)	ENSOKIG00005029085	ENSOKIG00005029010	ENSOKIG00005028982	ENSOKIG00005028967	DSCAM (ENSOKIG00005027691)	bace2 (ENSOKIG00005027472)	ENSOKIG00005027440	ENSOKIG00005027360	vmp1 (ENSOKIG00005027161)	tubd1 (ENSOKIG00005027110)	rps6kb1b (ENSOKIG00005026801) ##22	med13b (ENSOKIG00005025823)	zgc:112083 (ENSOKIG00005025572)	ENSOKIG00005025537	DGAT2 (ENSOKIG00005025492)	thap12b (ENSOKIG00005025487)	dyrk1ab (ENSOKIG00005025310)	alcamb (ENSOKIG00005025148)	ZPLD1 (ENSOKIG00005025118)	picalmb (ENSOKIG00005024344)	ENSOKIG00005024282	ENSOKIG00005024272	HSPA8 (ENSOKIG00005024212)	lim2.3 (ENSOKIG00005024196)	ENSOKIG00005024004	ENSOKIG00005023953
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000069171	ENSOMYG00000037542	MIPEP (ENSOMYG00000056267)	ENSOMYG00000046965	get1 (ENSOMYG00000072139)	sh3bgr (ENSOMYG00000046917)	ENSOMYG00000060063	ENSOMYG00000046904	PCP4 (ENSOMYG00000052464)	ENSOMYG00000046821	bace2 (ENSOMYG00000046757)	ENSOMYG00000046735	ENSOMYG00000046725	vmp1 (ENSOMYG00000046712)	ENSOMYG00000046703	rps6kb1b (ENSOMYG00000046639) ##22	med13b (ENSOMYG00000045974)	zgc:112083 (ENSOMYG00000045796)	ENSOMYG00000060831	ENSOMYG00000045776	ENSOMYG00000045766	thap12b (ENSOMYG00000045761)	dyrk1ab (ENSOMYG00000045737)	alcamb (ENSOMYG00000045710)	ENSOMYG00000045681	picalmb (ENSOMYG00000043978)	ENSOMYG00000043664	ENSOMYG00000043653	lim2.3 (ENSOMYG00000043644)	ENSOMYG00000043512	ENSOMYG00000043432
Salmo	ANCESTRAL SPECIES	7	ENSGT00390000016695.u	ENSGT00940000153259.a.a.b.g.b	ENSGT00950000183171.B	ENSGT00950000183107.a.b.a.e.b	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00560000077266.b.o	ENSGT00940000159847.f.b	ENSGT00940000165615.b	ENSGT01030000235187.b.b	ENSGT00940000154678.a.a.m.b	ENSGT00940000159548.m	ENSGT00670000098061.dc	ENSGT00390000012388.c	ENSGT00390000007230.b.d	ENSGT00940000157069.c	ENSGT00940000155062.b.d.a.f ##22	ENSGT00390000013680.b.b.k.b	ENSGT00870000136508.c.b.h	ENSGT00530000063947.C.c.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00940000158413.a.a	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000157408.a.b.c	ENSGT00940000156881.g.c	ENSGT00940000156527.d.d	ENSGT00950000183068.a.b.d.c	ENSGT00940000166822.b	ENSGT00940000164443.b.b	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00940000155457.a.b.h
River trout	MODERN SPECIES	18	rps25 (ENSSTUG00000045337)	sgcg (ENSSTUG00000045324)	SACS (ENSSTUG00000045288)	tnfrsf19 (ENSSTUG00000045269)	MIPEP (ENSSTUG00000043505)	BRWD1 (ENSSTUG00000043308)	GET1 (ENSSTUG00000043283)	sh3bgr (ENSSTUG00000043092)	ENSSTUG00000043037	ENSSTUG00000043011	bace2 (ENSSTUG00000040624)	ENSSTUG00000040587	ENSSTUG00000040517	vmp1 (ENSSTUG00000039588)	tubd1 (ENSSTUG00000039484)	rps6kb1b (ENSSTUG00000038781) ##22	med13b (ENSSTUG00000037765)	zgc:112083 (ENSSTUG00000037705)	ENSSTUG00000037691	DGAT2 (ENSSTUG00000037676)	WNT11 (ENSSTUG00000037604)	thap12b (ENSSTUG00000037593)	dyrk1ab (ENSSTUG00000037489)	alcamb (ENSSTUG00000037434)	ZPLD1 (ENSSTUG00000037419)	picalmb (ENSSTUG00000030933)	ENSSTUG00000030785	ENSSTUG00000030772	ENSSTUG00000030586	lim2.3 (ENSSTUG00000030560)	ENSSTUG00000030437
Atlantic salmon	MODERN SPECIES	12	TNFRSF19 (ENSSSAG00000116770)	MIPEP (ENSSSAG00000077681)	BRWD1 (ENSSSAG00000076419)	GET1 (ENSSSAG00000099223)	ENSSSAG00000076366	sh3bgr (ENSSSAG00000076342)	ENSSSAG00000105438	ENSSSAG00000076326	ENSSSAG00000076303	bace2 (ENSSSAG00000076277)	ENSSSAG00000088954	ENSSSAG00000102380	ENSSSAG00000095706	vmp1 (ENSSSAG00000076254)	tubd1 (ENSSSAG00000076249)	rps6kb1b (ENSSSAG00000038645) ##22	med13b (ENSSSAG00000075136)	zgc:112083 (ENSSSAG00000075048)	ma6d1 (ENSSSAG00000075045)	DGAT2 (ENSSSAG00000075042)	WNT11 (ENSSSAG00000075039)	thap12b (ENSSSAG00000075037)	dyrk1ab (ENSSSAG00000075014)	alcamb (ENSSSAG00000074948)	ENSSSAG00000074932	picalmb (ENSSSAG00000068883)	ENSSSAG00000068754	ENSSSAG00000068747	ENSSSAG00000096585	ENSSSAG00000067344	lim2.3 (ENSSSAG00000104390)
Huchen	MODERN SPECIES	5597														vmp1 (ENSHHUG00000015238)	tubd1 (ENSHHUG00000015229)	rps6kb1b (ENSHHUG00000015167) ##22	med13b (ENSHHUG00000014815)	zgc:112083 (ENSHHUG00000014774)
Northern pike	MODERN SPECIES		SACS (ENSELUG00000018309)	tnfrsf19 (ENSELUG00000018329)	MIPEP (ENSELUG00000018354)	BRWD1 (ENSELUG00000018454)	GET1 (ENSELUG00000018486)	ENSELUG00000018496	sh3bgr (ENSELUG00000018547)	PCP4 (ENSELUG00000029251)	ENSELUG00000031958	DSCAM (ENSELUG00000018635)	bace2 (ENSELUG00000018655)	ATM (ENSELUG00000019146)	ENSELUG00000019191	vmp1 (ENSELUG00000019247)	tubd1 (ENSELUG00000019274)	rps6kb1b (ENSELUG00000019321) ##22	med13b (ENSELUG00000019446)	ENSELUG00000019466	zgc:112083 (ENSELUG00000019494)	ENSELUG00000019513	DGAT2 (ENSELUG00000019544)	thap12b (ENSELUG00000019554)	dyrk1ab (ENSELUG00000019596)	alcamb (ENSELUG00000019643)	ZPLD1 (ENSELUG00000019686)	picalmb (ENSELUG00000019993)	ENSELUG00000020088	HSPA8 (ENSELUG00000020135)	lim2.3 (ENSELUG00000020108)	ENSELUG00000020146	ENSELUG00000020157
Clupeocephala	ANCESTRAL SPECIES	33	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000017214	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000179338	ENSGT00940000159975	ENSGT00530000063947.C.d
Euteleosteomorpha	ANCESTRAL SPECIES	35	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000017214	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Acanthomorphata	ANCESTRAL SPECIES	14	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000017214	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000017214	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Ovalentaria_B	ANCESTRAL SPECIES	26	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Pomacentridae	ANCESTRAL SPECIES	42	ENSGT01060000250877	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00390000016067
Amphiprion	ANCESTRAL SPECIES	72	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00390000016067	ENSGT00940000153592.B.a
Clown anemonefish	MODERN SPECIES	681							SPNS2 (ENSAOCG00000005041)	ruvbl2 (ENSAOCG00000005084)	ftr83 (ENSAOCG00000005123)	ftr82 (ENSAOCG00000005147)	atp5l (ENSAOCG00000005157)	nherf4b (ENSAOCG00000000217)	cltca (ENSAOCG00000005254)	ptrh2 (ENSAOCG00000002043)	VMP1 (ENSAOCG00000005312)	ENSAOCG00000000238 ##22	rnft1 (ENSAOCG00000000243)	med13a (ENSAOCG00000005443)	ints2 (ENSAOCG00000005547)
Orange clownfish	MODERN SPECIES	6	ZZEF1 (ENSAPEG00000013980)	cyb5d2 (ENSAPEG00000014167)	ankfy1 (ENSAPEG00000014177)	ube2g1a (ENSAPEG00000014285)	spns3 (ENSAPEG00000014311)	SPNS2 (ENSAPEG00000014337)	ruvbl2 (ENSAPEG00000014402)	ftr83 (ENSAPEG00000014475)	ftr82 (ENSAPEG00000014500)	atp5l (ENSAPEG00000014537)	nherf4b (ENSAPEG00000014555)	cltca (ENSAPEG00000014591)	ptrh2 (ENSAPEG00000014719)	VMP1 (ENSAPEG00000014734)	ENSAPEG00000014767	ENSAPEG00000014775 ##22	rnft1 (ENSAPEG00000014829)	med13a (ENSAPEG00000014866)	ints2 (ENSAPEG00000015071)	AUTS2 (ENSAPEG00000015219)	cxadr (ENSAPEG00000015699)	btg3 (ENSAPEG00000015710)	ENSAPEG00000015722	fgf13b (ENSAPEG00000015730)	ENSAPEG00000015745	afap1l1b (ENSAPEG00000015760)	ablim3 (ENSAPEG00000015796)	ADRB2 (ENSAPEG00000015923)	ubtd2 (ENSAPEG00000015929)	IL12B (ENSAPEG00000015946)	ublcp1 (ENSAPEG00000015991)
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000156179.f	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00950000183166.a.a.a.a	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	29	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179.f	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00940000178429	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890.w	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Nile tilapia	MODERN SPECIES	1	ENSONIG00000030618	ZZEF1 (ENSONIG00000017503)	cyb5d2 (ENSONIG00000017509)	ankfy1 (ENSONIG00000017506)	ube2g1a (ENSONIG00000017510)	spns3 (ENSONIG00000017513)	SPNS2 (ENSONIG00000017515)	ruvbl2 (ENSONIG00000017516)	ftr83 (ENSONIG00000017518)	ftr82 (ENSONIG00000042794)	atp5l (ENSONIG00000039539)	nherf4b (ENSONIG00000017521)	cltca (ENSONIG00000017523)	ptrh2 (ENSONIG00000020574)	VMP1 (ENSONIG00000017533)	ENSONIG00000017536 ##22	rnft1 (ENSONIG00000017540)	med13a (ENSONIG00000017544)	ints2 (ENSONIG00000017550)	AUTS2 (ENSONIG00000013890)	cxadr (ENSONIG00000013884)	btg3 (ENSONIG00000013880)	zgc:110006 (ENSONIG00000013879)	ripk4 (ENSONIG00000013876)	PRDM15 (ENSONIG00000011354)	C2CD2 (ENSONIG00000011348)	atg101 (ENSONIG00000011347)	ZBTB21 (ENSONIG00000020517)	ENSONIG00000027631	ENSONIG00000028592	umodl1 (ENSONIG00000011342)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	39												ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890.w	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Haplochromini	ANCESTRAL SPECIES	36	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179.e	ENSGT00940000156179.f	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000156747	ENSGT00390000018406	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890.w	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Haplochromini_A	ANCESTRAL SPECIES	41	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179.e	ENSGT00940000156179.f	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000156747	ENSGT00390000018406	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000160709.gb.a	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890.w	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Haplochromini_B	ANCESTRAL SPECIES	46	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179.e	ENSGT00940000156179.f	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000156747	ENSGT00390000018406	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000160709.fb	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890.w	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Eastern happy	MODERN SPECIES	1	spns3 (ENSACLG00000025176)	ube2g1a (ENSACLG00000025207)	ankfy1 (ENSACLG00000025221)	cyb5d2 (ENSACLG00000025297)	ZZEF1 (ENSACLG00000025326)	ATP2A3 (ENSACLG00000025451)	camkk1a (ENSACLG00000025568)	p2rx1 (ENSACLG00000025593)	dhx33 (ENSACLG00000025610)	c1qbp (ENSACLG00000025636)	nherf4b (ENSACLG00000025664)	cltca (ENSACLG00000025746)	ptrh2 (ENSACLG00000025860)	VMP1 (ENSACLG00000025863)	ENSACLG00000025929	ENSACLG00000025944 ##22	rnft1 (ENSACLG00000026053)	med13a (ENSACLG00000026063)	ints2 (ENSACLG00000026142)	AUTS2 (ENSACLG00000026319)	ENSACLG00000026502	cxadr (ENSACLG00000026504)	btg3 (ENSACLG00000026510)	zgc:110006 (ENSACLG00000026514)	ripk4 (ENSACLG00000026520)	ENSACLG00000026537	PRDM15 (ENSACLG00000026541)	C2CD2 (ENSACLG00000026579)	atg101 (ENSACLG00000026616)	ZBTB21 (ENSACLG00000026624)	ENSACLG00000026628
Zebra mbuna	MODERN SPECIES	1092	spns3 (ENSMZEG00005023266)	ube2g1a (ENSMZEG00005023267)	ENSMZEG00005023268	ankfy1 (ENSMZEG00005023269)	cyb5d2 (ENSMZEG00005023271)	ZZEF1 (ENSMZEG00005023273)	ATP2A3 (ENSMZEG00005023279)	camkk1a (ENSMZEG00005023284)	p2rx1 (ENSMZEG00005023288)	dhx33 (ENSMZEG00005023292)	c1qbp (ENSMZEG00005023297)	nherf4b (ENSMZEG00005023301)	cltca (ENSMZEG00005023314)	ptrh2 (ENSMZEG00005023327)	VMP1 (ENSMZEG00005023328)	ENSMZEG00005023330 ##22	rnft1 (ENSMZEG00005023331)	med13a (ENSMZEG00005023335)	ints2 (ENSMZEG00005023345)	ENSMZEG00005023353	crx (ENSMZEG00005023354)	kptn (ENSMZEG00005023357)	nova1 (ENSMZEG00005023362)	capns1b (ENSMZEG00005023364)	zgc:153990 (ENSMZEG00005023367)	dlb (ENSMZEG00005023369)	ppp1r14aa (ENSMZEG00005023370)	ENSMZEG00005023372	MARK4 (ENSMZEG00005023376)	ckma (ENSMZEG00005023380)	ENSMZEG00005023381
P. nyererei	MODERN SPECIES	394	SPNS2 (ENSPNYG00000021223)	spns3 (ENSPNYG00000021255)	ube2g1a (ENSPNYG00000021278)	ankfy1 (ENSPNYG00000021305)	cyb5d2 (ENSPNYG00000021404)	ZZEF1 (ENSPNYG00000021435)	ATP2A3 (ENSPNYG00000021524)	camkk1a (ENSPNYG00000021580)	p2rx1 (ENSPNYG00000021629)	dhx33 (ENSPNYG00000021648)	c1qbp (ENSPNYG00000021675)	nherf4b (ENSPNYG00000021731)	cltca (ENSPNYG00000021868)	ptrh2 (ENSPNYG00000021938)	VMP1 (ENSPNYG00000021954)	ENSPNYG00000022020 ##22	rnft1 (ENSPNYG00000022048)	med13a (ENSPNYG00000022087)	ints2 (ENSPNYG00000022152)	ENSPNYG00000022186	ENSPNYG00000022191	AUTS2 (ENSPNYG00000022205)	cxadr (ENSPNYG00000022225)	btg3 (ENSPNYG00000022238)	zgc:110006 (ENSPNYG00000022248)	ripk4 (ENSPNYG00000022263)	PRDM15 (ENSPNYG00000022279)	C2CD2 (ENSPNYG00000022300)	atg101 (ENSPNYG00000022310)	ZBTB21 (ENSPNYG00000022313)	ENSPNYG00000022318
Burton s mouthbrooder	MODERN SPECIES	351	SPNS2 (ENSHBUG00000016777)	spns3 (ENSHBUG00000016903)	ube2g1a (ENSHBUG00000016930)	ankfy1 (ENSHBUG00000017004)	cyb5d2 (ENSHBUG00000017014)	ZZEF1 (ENSHBUG00000017178)	ATP2A3 (ENSHBUG00000017234)	camkk1a (ENSHBUG00000017282)	p2rx1 (ENSHBUG00000017365)	dhx33 (ENSHBUG00000017415)	c1qbp (ENSHBUG00000017435)	nherf4b (ENSHBUG00000017695)	ptrh2 (ENSHBUG00000017727)	cltca (ENSHBUG00000017936)	VMP1 (ENSHBUG00000018002)	ENSHBUG00000018050 ##22	rnft1 (ENSHBUG00000018066)	med13a (ENSHBUG00000018215)	ints2 (ENSHBUG00000018293)	AUTS2 (ENSHBUG00000018432)	cxadr (ENSHBUG00000018448)	btg3 (ENSHBUG00000018451)	zgc:110006 (ENSHBUG00000018470)	ripk4 (ENSHBUG00000018516)	PRDM15 (ENSHBUG00000018577)	C2CD2 (ENSHBUG00000018587)	atg101 (ENSHBUG00000018599)	ZBTB21 (ENSHBUG00000018602)	ENSHBUG00000018624	ENSHBUG00000018637	MAP6 (ENSHBUG00000018659)
Lyretail cichlid	MODERN SPECIES	304									ENSNBRG00000017667	dhx33 (ENSNBRG00000017674)	nherf4b (ENSNBRG00000017700)	ENSNBRG00000017743	ENSNBRG00000017772	ptrh2 (ENSNBRG00000017781)	VMP1 (ENSNBRG00000017826)	ENSNBRG00000017932 ##22	rnft1 (ENSNBRG00000017969)	med13a (ENSNBRG00000017995)	ints2 (ENSNBRG00000018077)	ENSNBRG00000018142	AUTS2 (ENSNBRG00000018192)	cxadr (ENSNBRG00000018356)	btg3 (ENSNBRG00000018382)	zgc:110006 (ENSNBRG00000018396)	ripk4 (ENSNBRG00000018416)	PRDM15 (ENSNBRG00000018449)	C2CD2 (ENSNBRG00000018526)	atg101 (ENSNBRG00000018566)	ZBTB21 (ENSNBRG00000018615)	umodl1 (ENSNBRG00000018633)	MAP6 (ENSNBRG00000018687)
Midas cichlid	MODERN SPECIES	402	supt6h (ENSACIG00000004887)	ENSACIG00000004859	ube2g1a (ENSACIG00000004830)	spns3 (ENSACIG00000004800)	SPNS2 (ENSACIG00000004769)	ruvbl2 (ENSACIG00000004736)	ftr83 (ENSACIG00000004715)	ftr82 (ENSACIG00000004699)	atp5l (ENSACIG00000004693)	ENSACIG00000004690	nherf4b (ENSACIG00000004640)	cltca (ENSACIG00000004577)	ENSACIG00000004566	ptrh2 (ENSACIG00000004561)	VMP1 (ENSACIG00000004532)	ENSACIG00000004484 ##22	rnft1 (ENSACIG00000004455)	med13a (ENSACIG00000004400)	ints2 (ENSACIG00000004348)	ENSACIG00000004336	AUTS2 (ENSACIG00000004308)	cxadr (ENSACIG00000004258)	btg3 (ENSACIG00000004219)	zgc:110006 (ENSACIG00000004186)	ripk4 (ENSACIG00000004160)	PRDM15 (ENSACIG00000004096)	atg101 (ENSACIG00000004090)	C2CD2 (ENSACIG00000004053)	ZBTB21 (ENSACIG00000004038)	ENSACIG00000004029	ENSACIG00000004011
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
NAME_4	ANCESTRAL SPECIES	103	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000156599.e.b	ENSGT00940000160709	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975
Mummichog	MODERN SPECIES	2220		ZZEF1 (ENSFHEG00000000398)	cyb5d2 (ENSFHEG00000000388)	ankfy1 (ENSFHEG00000015803)	ENSFHEG00000015747	ube2g1a (ENSFHEG00000015743)	spns3 (ENSFHEG00000015735)	SPNS2 (ENSFHEG00000015716)	ruvbl2 (ENSFHEG00000015674)	ftr83 (ENSFHEG00000000379)	ftr82 (ENSFHEG00000015648)	nherf4b (ENSFHEG00000015626)	cltca (ENSFHEG00000015543)	ptrh2 (ENSFHEG00000015394)	VMP1 (ENSFHEG00000015380)	ENSFHEG00000015336 ##22	rnft1 (ENSFHEG00000015297)	med13a (ENSFHEG00000015280)	ints2 (ENSFHEG00000015234)	ENSFHEG00000015143	AUTS2 (ENSFHEG00000015132)	cxadr (ENSFHEG00000015110)	btg3 (ENSFHEG00000015099)	zgc:110006 (ENSFHEG00000015092)	ripk4 (ENSFHEG00000015080)	PRDM15 (ENSFHEG00000015074)	C2CD2 (ENSFHEG00000015050)	atg101 (ENSFHEG00000015044)	ZBTB21 (ENSFHEG00000015025)	ENSFHEG00000015020	MAP6 (ENSFHEG00000015010)
Sheepshead minnow	MODERN SPECIES	296														B3GAT1 (ENSCVAG00000014240)	VMP1 (ENSCVAG00000014406)	ENSCVAG00000014458 ##22	rnft1 (ENSCVAG00000014471)	med13a (ENSCVAG00000014612)	ints2 (ENSCVAG00000014735)	sec14l1 (ENSCVAG00000014796)	nptx1l (ENSCVAG00000014811)	pecam1a (ENSCVAG00000000377)	PPP1R27 (ENSCVAG00000014830)	mcrip1 (ENSCVAG00000014844)	alyref (ENSCVAG00000014869)	arhgdia (ENSCVAG00000014899)	cdr2l (ENSCVAG00000014918)	ENSCVAG00000014937	ENSCVAG00000014946	xylt2 (ENSCVAG00000014978)	ENSCVAG00000014996
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000168093	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000168093	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
NAME_6	ANCESTRAL SPECIES	16	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Sailfin molly	MODERN SPECIES	20	ENSPLAG00000018365	cyb5d2 (ENSPLAG00000018333)	ankfy1 (ENSPLAG00000018316)	ENSPLAG00000018263	ube2g1a (ENSPLAG00000018256)	spns3 (ENSPLAG00000018239)	SPNS2 (ENSPLAG00000018225)	ruvbl2 (ENSPLAG00000018179)	ftr83 (ENSPLAG00000018137)	ftr82 (ENSPLAG00000018080)	atp5l (ENSPLAG00000018065)	nherf4b (ENSPLAG00000018057)	cltca (ENSPLAG00000018039)	ptrh2 (ENSPLAG00000017895)	VMP1 (ENSPLAG00000017885)	ENSPLAG00000017836 ##22	rnft1 (ENSPLAG00000017768)
Amazon molly	MODERN SPECIES	344	ATP2A3 (ENSPFOG00000010142)	ZZEF1 (ENSPFOG00000010928)	cyb5d2 (ENSPFOG00000011722)	ankfy1 (ENSPFOG00000011523)	ube2g1a (ENSPFOG00000011752)	spns3 (ENSPFOG00000011784)	SPNS2 (ENSPFOG00000012057)	ruvbl2 (ENSPFOG00000012154)	ftr83 (ENSPFOG00000012268)	ftr82 (ENSPFOG00000012322)	atp5l (ENSPFOG00000012385)	nherf4b (ENSPFOG00000012404)	cltca (ENSPFOG00000012479)	ptrh2 (ENSPFOG00000019981)	VMP1 (ENSPFOG00000012735)	ENSPFOG00000012827 ##22	rnft1 (ENSPFOG00000012947)	med13a (ENSPFOG00000024209)	ints2 (ENSPFOG00000013081)	ENSPFOG00000013762	AUTS2 (ENSPFOG00000013965)	cxadr (ENSPFOG00000014050)	btg3 (ENSPFOG00000014137)	zgc:110006 (ENSPFOG00000014149)	ripk4 (ENSPFOG00000014172)	PRDM15 (ENSPFOG00000014213)	C2CD2 (ENSPFOG00000014289)	atg101 (ENSPFOG00000014414)	ZBTB21 (ENSPFOG00000014412)	umodl1 (ENSPFOG00000014425)	MAP6 (ENSPFOG00000014500)
Guppy	MODERN SPECIES	444	ATP2A3 (ENSPREG00000008353)	ENSPREG00000008432	cyb5d2 (ENSPREG00000008466)	ankfy1 (ENSPREG00000008492)	ube2g1a (ENSPREG00000008552)	spns3 (ENSPREG00000008650)	SPNS2 (ENSPREG00000008723)	ruvbl2 (ENSPREG00000008743)	ftr83 (ENSPREG00000008778)	ftr82 (ENSPREG00000008798)	atp5l (ENSPREG00000008835)	nherf4b (ENSPREG00000008881)	cltca (ENSPREG00000008915)	ptrh2 (ENSPREG00000009062)	VMP1 (ENSPREG00000009165)	ENSPREG00000009211 ##22	rnft1 (ENSPREG00000009266)	med13a (ENSPREG00000009296)	ints2 (ENSPREG00000009357)	ENSPREG00000009454	AUTS2 (ENSPREG00000009569)	cxadr (ENSPREG00000009699)	btg3 (ENSPREG00000009710)	zgc:110006 (ENSPREG00000009716)	ripk4 (ENSPREG00000009732)	PRDM15 (ENSPREG00000009745)	C2CD2 (ENSPREG00000009798)	atg101 (ENSPREG00000009819)	ZBTB21 (ENSPREG00000009830)	ENSPREG00000009833	ENSPREG00000009840
Platyfish	MODERN SPECIES	2	cyb5d2 (ENSXMAG00000021541)	ankfy1 (ENSXMAG00000005852)	ENSXMAG00000023117	ube2g1a (ENSXMAG00000021404)	spns3 (ENSXMAG00000005883)	SPNS2 (ENSXMAG00000005907)	ruvbl2 (ENSXMAG00000005918)	ftr83 (ENSXMAG00000005932)	ENSXMAG00000023206	ftr82 (ENSXMAG00000005946)	atp5l (ENSXMAG00000005949)	nherf4b (ENSXMAG00000005950)	cltca (ENSXMAG00000000159)	ptrh2 (ENSXMAG00000020094)	VMP1 (ENSXMAG00000000149)	ENSXMAG00000000125 ##22	rnft1 (ENSXMAG00000028931)	med13a (ENSXMAG00000000108)	ints2 (ENSXMAG00000000085)	ENSXMAG00000005437	AUTS2 (ENSXMAG00000005417)	cxadr (ENSXMAG00000030048)	btg3 (ENSXMAG00000001510)	zgc:110006 (ENSXMAG00000024037)	ripk4 (ENSXMAG00000029450)	PRDM15 (ENSXMAG00000013849)	C2CD2 (ENSXMAG00000013863)	atg101 (ENSXMAG00000013867)	ZBTB21 (ENSXMAG00000013870)	ENSXMAG00000030021	umodl1 (ENSXMAG00000013871)
Aplocheiloidei	ANCESTRAL SPECIES	103															ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Mangrove rivulus	MODERN SPECIES	200															VMP1 (ENSKMAG00000001535)	ENSKMAG00000001463 ##22	rnft1 (ENSKMAG00000001441)	med13a (ENSKMAG00000001306)	ints2 (ENSKMAG00000001184)	ENSKMAG00000001163
Oryzias	ANCESTRAL SPECIES	31	ENSGT00940000155093.b	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000162439	ENSGT00940000157820.a.a	ENSGT00940000163900	ENSGT01020000230351.E.d	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Oryzias_b	ANCESTRAL SPECIES	97	ENSGT00390000017523	ENSGT00940000155093.b.tb	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000162439	ENSGT00940000157820.a.b.bb.b	ENSGT01020000230351.E.d	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888
Indian medaka	MODERN SPECIES	156															VMP1 (ENSOMEG00000016949)	ENSOMEG00000017046 ##22	rnft1 (ENSOMEG00000017085)	ENSOMEG00000017098	ENSOMEG00000017112	ENSOMEG00000017134	med13a (ENSOMEG00000017190)	ints2 (ENSOMEG00000017250)	ENSOMEG00000017275
Javanese ricefish	MODERN SPECIES	5	UBB (ENSOJAG00000016576)	p2rx5 (ENSOJAG00000016490)	ruvbl2 (ENSOJAG00000016327)	ftr83 (ENSOJAG00000016286)	ftr82 (ENSOJAG00000016255)	atp5l (ENSOJAG00000016193)	ENSOJAG00000016164	ENSOJAG00000016160	ENSOJAG00000016155	ENSOJAG00000016144	large1 (ENSOJAG00000015453)	ptrh2 (ENSOJAG00000015410)	cltca (ENSOJAG00000013818)	VMP1 (ENSOJAG00000013320)	ENSOJAG00000013286	ENSOJAG00000012018 ##22	rnft1 (ENSOJAG00000011924)	ENSOJAG00000011761	ENSOJAG00000011750	AUTS2 (ENSOJAG00000011264)	cxadr (ENSOJAG00000011215)	btg3 (ENSOJAG00000011209)	zgc:110006 (ENSOJAG00000011181)	ripk4 (ENSOJAG00000011170)	PRDM15 (ENSOJAG00000010979)	C2CD2 (ENSOJAG00000010910)	atg101 (ENSOJAG00000010901)	ENSOJAG00000010874	MAP6 (ENSOJAG00000010863)	ENSOJAG00000010857	mogat2 (ENSOJAG00000010849)
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00940000155093.b	ENSGT00390000018434	ENSGT00390000003183	ENSGT00940000162439	ENSGT00940000157820.a.a	ENSGT00940000163900	ENSGT01020000230351.E.d	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00960000193219	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Japanese Medaka HdrR	MODERN SPECIES	5	adora2b (ENSORLG00000011912)	zswim7 (ENSORLG00000011920)	ncor1 (ENSORLG00000011992)	pigl (ENSORLG00000029758)	CENPV (ENSORLG00000012007)	ubb (ENSORLG00000012032)	p2rx5 (ENSORLG00000012047)	ruvbl2 (ENSORLG00000012078)	ftr83 (ENSORLG00000012084)	ftr82 (ENSORLG00000012100)	atp5l (ENSORLG00000012113)	ENSORLG00000025547	cltca (ENSORLG00000012174)	ptrh2 (ENSORLG00000012183)	ENSORLG00000012209	ENSORLG00000012295 ##22	rnft1 (ENSORLG00000012310)	med13a (ENSORLG00000012337)	ints2 (ENSORLG00000012396)	AUTS2 (ENSORLG00000012440)	ENSORLG00000024537	cxadr (ENSORLG00000012457)	btg3 (ENSORLG00000028396)	zgc:110006 (ENSORLG00000023562)	ripk4 (ENSORLG00000012500)	PRDM15 (ENSORLG00000012533)	C2CD2 (ENSORLG00000012550)	atg101 (ENSORLG00000022617)	ZBTB21 (ENSORLG00000012564)	ENSORLG00000028612	MAP6 (ENSORLG00000012570)
Chinese medaka	MODERN SPECIES	2209																ENSOSIG00000012858 ##22
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Greater amberjack	MODERN SPECIES	39	ZZEF1 (ENSSDUG00000018005)	cyb5d2 (ENSSDUG00000018115)	ankfy1 (ENSSDUG00000018127)	ube2g1a (ENSSDUG00000018171)	spns3 (ENSSDUG00000018188)	SPNS2 (ENSSDUG00000018219)	ruvbl2 (ENSSDUG00000018240)	ftr83 (ENSSDUG00000018269)	ftr82 (ENSSDUG00000018280)	atp5l (ENSSDUG00000018295)	nherf4b (ENSSDUG00000018307)	cltca (ENSSDUG00000018330)	ptrh2 (ENSSDUG00000018478)	ENSSDUG00000018481	VMP1 (ENSSDUG00000018497)	ENSSDUG00000018534 ##22	rnft1 (ENSSDUG00000018589)	med13a (ENSSDUG00000018609)	ints2 (ENSSDUG00000018651)	ENSSDUG00000018715	AUTS2 (ENSSDUG00000018721)	cxadr (ENSSDUG00000018759)	btg3 (ENSSDUG00000018777)	zgc:110006 (ENSSDUG00000018789)	ripk4 (ENSSDUG00000018812)	PRDM15 (ENSSDUG00000018835)	C2CD2 (ENSSDUG00000018900)	atg101 (ENSSDUG00000018937)	ZBTB21 (ENSSDUG00000018941)	umodl1 (ENSSDUG00000018945)	ENSSDUG00000018979
Yellowtail amberjack	MODERN SPECIES	2973	ATP2A3 (ENSSLDG00000020300)	ZZEF1 (ENSSLDG00000020380)	cyb5d2 (ENSSLDG00000020502)	ankfy1 (ENSSLDG00000020515)	ube2g1a (ENSSLDG00000020570)	spns3 (ENSSLDG00000020590)	SPNS2 (ENSSLDG00000020609)	ruvbl2 (ENSSLDG00000020629)	ftr83 (ENSSLDG00000020663)	ftr82 (ENSSLDG00000020684)	atp5l (ENSSLDG00000020709)	nherf4b (ENSSLDG00000020716)	cltca (ENSSLDG00000020736)	ptrh2 (ENSSLDG00000020791)	VMP1 (ENSSLDG00000020806)	ENSSLDG00000020864 ##22	rnft1 (ENSSLDG00000020915)	med13a (ENSSLDG00000020940)	ints2 (ENSSLDG00000021035)	lysmd3 (ENSSLDG00000021083)	ENSSLDG00000021071	mblac2 (ENSSLDG00000021089)	rtkna (ENSSLDG00000021105)	smn1 (ENSSLDG00000021135)	hspb11 (ENSSLDG00000021149)	LZTS1 (ENSSLDG00000021163)	ENSSLDG00000021190	bco2l (ENSSLDG00000021212)	ela3l (ENSSLDG00000021269)	ENSSLDG00000021291	fam219ab (ENSSLDG00000021302)
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000155062.b.d.b ##22
Tongue sole	MODERN SPECIES	10	p2rx1 (ENSCSEG00000011044)	camkk1a (ENSCSEG00000011071)	ATP2A3 (ENSCSEG00000011132)	ZZEF1 (ENSCSEG00000011204)	cyb5d2 (ENSCSEG00000011274)	ankfy1 (ENSCSEG00000011282)	ube2g1a (ENSCSEG00000011314)	SPNS2 (ENSCSEG00000011335)	ruvbl2 (ENSCSEG00000011364)	ftr83 (ENSCSEG00000011391)	ftr82 (ENSCSEG00000011399)	atp5l (ENSCSEG00000011411)	nherf4b (ENSCSEG00000011455)	cltca (ENSCSEG00000011486)	ptrh2 (ENSCSEG00000011617)	ENSCSEG00000011623 ##22	rnft1 (ENSCSEG00000011652)	med13a (ENSCSEG00000011668)	ints2 (ENSCSEG00000011730)	AUTS2 (ENSCSEG00000011806)	ENSCSEG00000011872	ARHGAP26 (ENSCSEG00000012004)	ndfip1l (ENSCSEG00000012074)	fgf1b (ENSCSEG00000012102)	spry4 (ENSCSEG00000012105)	endou2 (ENSCSEG00000012111)	rnf14 (ENSCSEG00000012116)	HSPA4 (ENSCSEG00000012129)	alg5 (ENSCSEG00000012166)	ENSCSEG00000012196	rfxap (ENSCSEG00000012231)
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823.b	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Climbing perch	MODERN SPECIES	5	ATP2A3 (ENSATEG00000004892)	ZZEF1 (ENSATEG00000004666)	cyb5d2 (ENSATEG00000004642)	ankfy1 (ENSATEG00000004571)	ube2g1a (ENSATEG00000026882)	spns3 (ENSATEG00000004516)	SPNS2 (ENSATEG00000004450)	ruvbl2 (ENSATEG00000004385)	ftr83 (ENSATEG00000004332)	ftr82 (ENSATEG00000004290)	atp5l (ENSATEG00000004283)	nherf4b (ENSATEG00000004249)	cltca (ENSATEG00000004119)	ptrh2 (ENSATEG00000004102)	ENSATEG00000004033	ENSATEG00000004003 ##22	rnft1 (ENSATEG00000003991)	med13a (ENSATEG00000003855)	ints2 (ENSATEG00000003724)	ENSATEG00000003637	cxadr (ENSATEG00000003528)	ENSATEG00000003518	ENSATEG00000003511	RIPK4 (ENSATEG00000003499)	PRDM15 (ENSATEG00000003481)	C2CD2 (ENSATEG00000003475)	atg101 (ENSATEG00000003457)	ZBTB21 (ENSATEG00000003451)	umodl1 (ENSATEG00000003443)	MAP6 (ENSATEG00000003426)	mogat2 (ENSATEG00000003295)
Siamese fighting fish	MODERN SPECIES	5	ZZEF1 (ENSBSLG00000021871)	cyb5d2 (ENSBSLG00000022432)	ankfy1 (ENSBSLG00000022451)	ube2g1a (ENSBSLG00000022583)	spns3 (ENSBSLG00000022634)	SPNS2 (ENSBSLG00000022986)	ruvbl2 (ENSBSLG00000023101)	ftr83 (ENSBSLG00000023294)	ftr82 (ENSBSLG00000023310)	atp5l (ENSBSLG00000023317)	ENSBSLG00000023319	ENSBSLG00000023322	cltca (ENSBSLG00000023361)	ptrh2 (ENSBSLG00000024097)	VMP1 (ENSBSLG00000024115)	ENSBSLG00000024307 ##22	rnft1 (ENSBSLG00000024356)	med13a (ENSBSLG00000024379)	ints2 (ENSBSLG00000024682)	AUTS2 (ENSBSLG00000024716)	cxadr (ENSBSLG00000024866)	btg3 (ENSBSLG00000010988)	zgc:110006 (ENSBSLG00000010989)	ripk4 (ENSBSLG00000010994)	PRDM15 (ENSBSLG00000011018)	C2CD2 (ENSBSLG00000011125)	atg101 (ENSBSLG00000011170)	ZBTB21 (ENSBSLG00000011177)	umodl1 (ENSBSLG00000011180)	MAP6 (ENSBSLG00000011209)	mogat2 (ENSBSLG00000011588)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000155062.b.d.b ##22
Tetraodon	MODERN SPECIES	22	pknox2 (ENSTNIG00000008608)	ENSTNIG00000000367	tmem218 (ENSTNIG00000000479)	ENSTNIG00000008609	ENSTNIG00000008610	fez1 (ENSTNIG00000004486)	cfap58 (ENSTNIG00000005100)	ENSTNIG00000005142	vps26bl (ENSTNIG00000011629)	ARHGAP32 (ENSTNIG00000011630)	ENSTNIG00000011631	crx (ENSTNIG00000011632)	kptn (ENSTNIG00000011633)	nova1 (ENSTNIG00000011634)	zgc:153990 (ENSTNIG00000011635)	ENSTNIG00000011636 ##22	rnft1 (ENSTNIG00000011637)	ENSTNIG00000011638	ENSTNIG00000009033	med13a (ENSTNIG00000011639)	ints2 (ENSTNIG00000011640)	AUTS2 (ENSTNIG00000004427)	cxadr (ENSTNIG00000004428)	uvrag (ENSTNIG00000003753)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000176156	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000154203	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975
Perciformes	ANCESTRAL SPECIES	25	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Lumpfish	MODERN SPECIES	5	ATP2A3 (ENSCLMG00005012606)	ZZEF1 (ENSCLMG00005014272)	cyb5d2 (ENSCLMG00005015627)	ankfy1 (ENSCLMG00005015633)	ube2g1a (ENSCLMG00005015661)	spns3 (ENSCLMG00005015673)	SPNS2 (ENSCLMG00005015818)	ruvbl2 (ENSCLMG00005015825)	ftr83 (ENSCLMG00005016071)	ftr82 (ENSCLMG00005016080)	atp5l (ENSCLMG00005016081)	nherf4b (ENSCLMG00005016083)	cltca (ENSCLMG00005016112)	ptrh2 (ENSCLMG00005017158)	VMP1 (ENSCLMG00005017160)	ENSCLMG00005017165 ##22	rnft1 (ENSCLMG00005017622)	ENSCLMG00005017623	med13a (ENSCLMG00005017640)	ints2 (ENSCLMG00005019629)	ENSCLMG00005019663	AUTS2 (ENSCLMG00005019665)	cxadr (ENSCLMG00005019666)	btg3 (ENSCLMG00005019667)	zgc:110006 (ENSCLMG00005019669)	ripk4 (ENSCLMG00005019671)	PRDM15 (ENSCLMG00005019676)	C2CD2 (ENSCLMG00005019677)	atg101 (ENSCLMG00005019679)	ZBTB21 (ENSCLMG00005019681)	ENSCLMG00005019683
Stickleback	MODERN SPECIES	7	c1qbp (ENSGACG00000020230)	dhx33 (ENSGACG00000020229)	p2rx1 (ENSGACG00000020228)	camkk1a (ENSGACG00000020227)	ATP2A3 (ENSGACG00000020226)	ZZEF1 (ENSGACG00000020225)	ankfy1 (ENSGACG00000020224)	ube2g1a (ENSGACG00000020223)	spns3 (ENSGACG00000020222)	ENSGACG00000020221	ruvbl2 (ENSGACG00000020220)	ftr83 (ENSGACG00000020219)	ftr82 (ENSGACG00000020218)	atp5l (ENSGACG00000020217)	cltca (ENSGACG00000020216)	ENSGACG00000020215 ##22	rnft1 (ENSGACG00000020214)	med13a (ENSGACG00000020213)	ints2 (ENSGACG00000020212)	zp3f.1 (ENSGACG00000020211)	AUTS2 (ENSGACG00000020210)	cxadr (ENSGACG00000020209)	btg3 (ENSGACG00000020208)	zgc:110006 (ENSGACG00000020207)	ripk4 (ENSGACG00000020206)	PRDM15 (ENSGACG00000020205)	C2CD2 (ENSGACG00000020204)	atg101 (ENSGACG00000020203)	ZBTB21 (ENSGACG00000020202)	ENSGACG00000020201	ENSGACG00000020200
Perciformes_a	ANCESTRAL SPECIES	26	ENSGT00940000155668.j	ENSGT00940000155045	ENSGT00940000160156	ENSGT00940000156179	ENSGT00940000155228	ENSGT00390000005976.a.a.a	ENSGT00390000005976.a.a.b	ENSGT00940000153556.B	ENSGT00940000162978.a.a.b	ENSGT00940000166102	ENSGT00390000009724.c	ENSGT00950000182849.A.f.a.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000177985	ENSGT00940000159975	ENSGT00530000063947.C.d
Channel bull blenny	MODERN SPECIES	5	ATP2A3 (ENSCGOG00000018525)	ZZEF1 (ENSCGOG00000018390)	cyb5d2 (ENSCGOG00000018382)	ankfy1 (ENSCGOG00000018337)	ube2g1a (ENSCGOG00000018326)	spns3 (ENSCGOG00000018037)	SPNS2 (ENSCGOG00000017799)	ruvbl2 (ENSCGOG00000017679)	ftr83 (ENSCGOG00000017672)	ftr82 (ENSCGOG00000017669)	atp5l (ENSCGOG00000017659)	nherf4b (ENSCGOG00000017655)	ptrh2 (ENSCGOG00000017654)	cltca (ENSCGOG00000014173)	VMP1 (ENSCGOG00000014096)	ENSCGOG00000012711 ##22	rnft1 (ENSCGOG00000012683)	med13a (ENSCGOG00000011324)	ints2 (ENSCGOG00000010333)	AUTS2 (ENSCGOG00000009203)	cxadr (ENSCGOG00000009159)	btg3 (ENSCGOG00000009155)	zgc:110006 (ENSCGOG00000009154)	ripk4 (ENSCGOG00000009149)	PRDM15 (ENSCGOG00000009089)	C2CD2 (ENSCGOG00000009073)	atg101 (ENSCGOG00000009066)	ZBTB21 (ENSCGOG00000009064)	ENSCGOG00000009059	ENSCGOG00000009057	mogat2 (ENSCGOG00000008959)
Pike perch	MODERN SPECIES	25	ATP2A3 (ENSSLUG00000003912)	ZZEF1 (ENSSLUG00000003643)	cyb5d2 (ENSSLUG00000003586)	ankfy1 (ENSSLUG00000003223)	ube2g1a (ENSSLUG00000003043)	spns3 (ENSSLUG00000002607)	SPNS2 (ENSSLUG00000002498)	ruvbl2 (ENSSLUG00000002309)	ftr83 (ENSSLUG00000002279)	ftr82 (ENSSLUG00000002272)	atp5l (ENSSLUG00000002263)	nherf4b (ENSSLUG00000002253)	cltca (ENSSLUG00000001226)	ptrh2 (ENSSLUG00000001078)	VMP1 (ENSSLUG00000001063)	ENSSLUG00000000943 ##22	rnft1 (ENSSLUG00000000895)	med13a (ENSSLUG00000000621)	ints2 (ENSSLUG00000000411)	AUTS2 (ENSSLUG00000000368)	cxadr (ENSSLUG00000000363)	btg3 (ENSSLUG00000000357)	zgc:110006 (ENSSLUG00000000351)	ripk4 (ENSSLUG00000000346)	PRDM15 (ENSSLUG00000016649)	C2CD2 (ENSSLUG00000016637)	atg101 (ENSSLUG00000016632)	ZBTB21 (ENSSLUG00000016627)	ENSSLUG00000016624	ENSSLUG00000016617	ENSSLUG00000016612
Tiger tail seahorse	MODERN SPECIES	455	ATP2A3 (ENSHCOG00000011269)	ZZEF1 (ENSHCOG00000011860)	cyb5d2 (ENSHCOG00000011921)	ankfy1 (ENSHCOG00000011942)	ube2g1a (ENSHCOG00000011959)	spns3 (ENSHCOG00000011991)	SPNS2 (ENSHCOG00000012022)	ruvbl2 (ENSHCOG00000012047)	ftr83 (ENSHCOG00000012070)	ftr82 (ENSHCOG00000012085)	atp5l (ENSHCOG00000012095)	ENSHCOG00000012106	nherf4b (ENSHCOG00000012164)	cltca (ENSHCOG00000012301)	ptrh2 (ENSHCOG00000012325)	ENSHCOG00000012357 ##22	rnft1 (ENSHCOG00000012411)	med13a (ENSHCOG00000012491)	ints2 (ENSHCOG00000012559)	AUTS2 (ENSHCOG00000012618)	cxadr (ENSHCOG00000012630)	zgc:110006 (ENSHCOG00000012636)	ripk4 (ENSHCOG00000012678)	PRDM15 (ENSHCOG00000000365)	C2CD2 (ENSHCOG00000000367)	atg101 (ENSHCOG00000012709)	ZBTB21 (ENSHCOG00000012732)	ENSHCOG00000012749	ENSHCOG00000012762	mogat2 (ENSHCOG00000012773)	dgat2 (ENSHCOG00000012797)
Cod	MODERN SPECIES	20	ncor1 (ENSGMOG00000022749)	zswim7 (ENSGMOG00000010701)	adora2b (ENSGMOG00000010712)	ENSGMOG00000034697	ENSGMOG00000010736	ENSGMOG00000010744	ENSGMOG00000030116	ENSGMOG00000010763	zgc:85789 (ENSGMOG00000010771)	ENSGMOG00000010783	ENSGMOG00000035370	ENSGMOG00000025228	cltca (ENSGMOG00000012290)	ptrh2 (ENSGMOG00000020589)	ENSGMOG00000012274	ENSGMOG00000012269 ##22	rnft1 (ENSGMOG00000012265)	med13a (ENSGMOG00000012253)	ints2 (ENSGMOG00000012241)	ENSGMOG00000036889	ENSGMOG00000023510	ENSGMOG00000028475	cxadr (ENSGMOG00000012230)	ENSGMOG00000012227	ENSGMOG00000028802	RIPK4 (ENSGMOG00000024177)	PRDM15 (ENSGMOG00000012203)	C2CD2 (ENSGMOG00000012196)	atg101 (ENSGMOG00000012194)	ZBTB21 (ENSGMOG00000023478)	ENSGMOG00000036446
Protacanthopterygii	ANCESTRAL SPECIES	63	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000017214	ENSGT00390000015077	ENSGT00990000203589.a.a	ENSGT00390000018151	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00390000002429	ENSGT00940000159908	ENSGT00940000157890	ENSGT00530000063764.a	ENSGT00390000016511	ENSGT00940000161028	ENSGT00940000159975	ENSGT00530000063947.C.d	ENSGT01030000234582.e.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	534	ENSGT01020000230351.E.d.e	ENSGT00940000155093.b.wb	ENSGT00390000017523.b	ENSGT01030000234555.a.a.a.c.a.q.b	ENSGT00940000153592.B.a.w	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a.c.a	ENSGT00390000001189.a	ENSGT00390000017214.d	ENSGT00390000015077.i	ENSGT00990000203589.a.a.a.a	ENSGT00390000018151.g	ENSGT00950000183166.a.a.a.b.e.b.f.a	ENSGT00390000015991.x	ENSGT00390000007230.a.a	ENSGT00940000155062.b.d.b.a ##22	ENSGT00940000156740.w	ENSGT00390000013680.b.a.c	ENSGT00940000175044
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT01020000230351.E.d.e	ENSGT00940000155093.b.wb	ENSGT00390000017523.b	ENSGT01030000234555.a.a.a.c.a.q.b	ENSGT00940000153592.B.a.w	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a.c.a	ENSGT00390000001189.a	ENSGT00390000017214.d	ENSGT00390000015077.i	ENSGT00990000203589.a.a.a.a	ENSGT00390000018151.g	ENSGT00950000183166.a.a.a.b.e.b.f.a	ENSGT00390000015991.x	ENSGT00390000007230.a.a	ENSGT00940000155062.b.d.b.a ##22	ENSGT00940000156740.w	ENSGT00390000013680.b.a.c	ENSGT00940000175044	ENSGT00940000154823.e.b	ENSGT00940000154829.i.a.e	ENSGT00950000182952.A.b.d.a	ENSGT00390000002429.e	ENSGT00940000159908.i	ENSGT00940000157890.r	ENSGT00530000063764.a.c	ENSGT00390000016511.k	ENSGT00940000161028.c	ENSGT00940000159975.a	ENSGT00530000063947.C.d.c	ENSGT01030000234582.e.b.c
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00390000003917.k	ENSGT01020000230351.E.d.e	ENSGT00940000155093.b.wb	ENSGT00390000017523.b	ENSGT01030000234555.a.a.a.c.a.q.b	ENSGT00940000153592.B.a.w.d	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a.c.a	ENSGT00390000001189.a	ENSGT00390000015077.i	ENSGT00990000203589.a.a.a.a	ENSGT00390000018151.g	ENSGT00950000183166.a.a.a.b.e.b.f.a	ENSGT01010000230108	ENSGT00390000007230.a.a	ENSGT00940000155062.b.d.b.a ##22	ENSGT00940000156740.w	ENSGT00390000013680.b.a.c	ENSGT00940000175044	ENSGT00530000063764.a.c	ENSGT00390000016511.k	ENSGT00940000161028.c	ENSGT00940000159975.a	ENSGT00530000063947.C.d.c	ENSGT01030000234582.e.b.c	ENSGT01030000234582.f.a.b.o.b	ENSGT00390000012877.r	ENSGT00940000158413.b.c	ENSGT00530000063516.a.b.m	ENSGT00530000063516.a.a.a.a.c	ENSGT00530000063691.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00390000003917.k	ENSGT01020000230351.E.d.e	ENSGT00940000155093.b.wb	ENSGT00390000017523.b	ENSGT01030000234555.a.a.a.c.a.q.b	ENSGT00940000153592.B.a.w.d	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a.c.a	ENSGT00390000001189.a	ENSGT00390000015077.i	ENSGT00990000203589.a.a.a.a	ENSGT00390000018151.g	ENSGT00950000183166.a.a.a.b.e.b.f.a	ENSGT01010000230108	ENSGT00390000007230.a.a	ENSGT00940000155062.b.d.b.a ##22	ENSGT00940000156740.w	ENSGT00390000013680.b.a.c	ENSGT00940000175044	ENSGT00940000154823.e.b	ENSGT00940000154829.i.a.e	ENSGT00950000182952.A.b.d.a	ENSGT00390000002429.e	ENSGT00940000159908.i	ENSGT00530000063764.a.c	ENSGT00390000016511.k	ENSGT00940000161028.c	ENSGT00940000159975.a	ENSGT00530000063947.C.d.c	ENSGT01030000234582.e.b.c	ENSGT01030000234582.f.a.b.o.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2936										aspa (ENSOTSG00005043095)	AKAP10 (ENSOTSG00005043028)	ENSOTSG00005043027	ENSOTSG00005043025	cltca (ENSOTSG00005042121)	VMP1 (ENSOTSG00005042086)	ENSOTSG00005039553 ##22	rnft1 (ENSOTSG00005039549)	med13a (ENSOTSG00005042771)	ENSOTSG00005042763	crybb1l3 (ENSOTSG00005042761)	cryba1a (ENSOTSG00005042759)	CPD (ENSOTSG00005042724)	gosr1 (ENSOTSG00005042722)	TRARG1 (ENSOTSG00005042721)	AIPL1 (ENSOTSG00005042720) ##29	ENSOTSG00005042718	exo5 (ENSOTSG00005042717)	rflnb (ENSOTSG00005042716)	vps53 (ENSOTSG00005042137)	aifm4 (ENSOTSG00005042124)	tlcd2 (ENSOTSG00005042120)
Chinook salmon	MODERN SPECIES	23	adora2b (ENSOTSG00005026974)	SPECC1 (ENSOTSG00005026978)	TIMM22 (ENSOTSG00005026981)	ABR (ENSOTSG00005026985)	RUNDC3A (ENSOTSG00005027003)	ENSOTSG00005027402	FAM117A (ENSOTSG00005027407)	slc35b1 (ENSOTSG00005027416)	ENSOTSG00005027423	spop (ENSOTSG00005027424)	aspa (ENSOTSG00005027425)	AKAP10 (ENSOTSG00005027429)	ENSOTSG00005027472	ENSOTSG00005027473	cltca (ENSOTSG00005027499)	ENSOTSG00005028946 ##22	rnft1 (ENSOTSG00005029055)	med13a (ENSOTSG00005029059)	ENSOTSG00005029413	ENSOTSG00005029416	samsn1b (ENSOTSG00005029419)	GDPD5 (ENSOTSG00005029422)	serpinh1a (ENSOTSG00005029441)	acer3 (ENSOTSG00005029442)	ENSOTSG00005029444	acat1 (ENSOTSG00005029483)	tmprss2 (ENSOTSG00005029534)	dscama (ENSOTSG00005029538)	ENSOTSG00005029546	ENSOTSG00005029547	ENSOTSG00005029549
Coho salmon	MODERN SPECIES	20	p2rx5 (ENSOKIG00005039561)	NCOR1 (ENSOKIG00005038245)	ENSOKIG00005038141	adora2b (ENSOKIG00005038126)	ENSOKIG00005043141	ENSOKIG00005043120	TIMM22 (ENSOKIG00005043091)	ABR (ENSOKIG00005037728)	aspa (ENSOKIG00005037330)	AKAP10 (ENSOKIG00005037245)	ENSOKIG00005037211	ENSOKIG00005037184	cltca (ENSOKIG00005036221)	ENSOKIG00005036080	VMP1 (ENSOKIG00005036046)	ENSOKIG00005035809 ##22	rnft1 (ENSOKIG00005035763)	med13a (ENSOKIG00005034739)	ENSOKIG00005034659	ENSOKIG00005034651	ENSOKIG00005034642	ENSOKIG00005034631	ENSOKIG00005033943	btg3 (ENSOKIG00005033910)	ENSOKIG00005033904	ENSOKIG00005033889	RIPK4 (ENSOKIG00005033873)	C2CD2 (ENSOKIG00005033858)	atg101 (ENSOKIG00005033843)	ZBTB21 (ENSOKIG00005033836)	umodl1 (ENSOKIG00005033824)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000015618	adora2b (ENSOMYG00000015627)	ENSOMYG00000015659	ENSOMYG00000015699	ENSOMYG00000015704	ENSOMYG00000015773	ENSOMYG00000039032	ENSOMYG00000016442	ENSOMYG00000060154	ENSOMYG00000016469	ENSOMYG00000016518	ENSOMYG00000016534	cltca (ENSOMYG00000016659)	ENSOMYG00000020345	ENSOMYG00000020370	ENSOMYG00000020489 ##22	rnft1 (ENSOMYG00000021054)	ENSOMYG00000058548	med13a (ENSOMYG00000021204)	ENSOMYG00000052162	ints2 (ENSOMYG00000057190)	ENSOMYG00000060019	ENSOMYG00000021559	ENSOMYG00000051068	cxadr (ENSOMYG00000022077)	ENSOMYG00000022099	ENSOMYG00000022105	ENSOMYG00000022124	ENSOMYG00000070522	ENSOMYG00000022164	atg101 (ENSOMYG00000022187)
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000162439	ENSGT00940000155093.b.wb	ENSGT00990000213466	ENSGT01030000234555.a.a.a.c.a.q.b	ENSGT00940000153592.B.a.w	ENSGT00390000016067.e	ENSGT00940000153491.b.b.a.c.a	ENSGT00390000001189.a	ENSGT00390000017214.d	ENSGT00390000015077.i	ENSGT00990000203589.a.a.a.a	ENSGT00390000018151.g	ENSGT00950000183166.a.a.a.b.e.b.f.a	ENSGT00390000015991.x	ENSGT00390000007230.a.a	ENSGT00940000155062.b.d.b.a ##22	ENSGT00940000156740.w	ENSGT00390000013680.b.a.c	ENSGT00940000175044	ENSGT00940000154823.e.b	ENSGT00940000154829.i.a.e	ENSGT00950000182952.A.b.d.a	ENSGT00390000002429.e	ENSGT00940000159908.i	ENSGT00940000157890.r	ENSGT00530000063764.a.c	ENSGT00390000016511.k	ENSGT00940000161028.c	ENSGT00940000159975.a	ENSGT00530000063947.C.d.c	ENSGT01030000234582.e.b.c
River trout	MODERN SPECIES	10	ncor1 (ENSSTUG00000011408)	ENSSTUG00000011698	adora2b (ENSSTUG00000011703)	SPECC1 (ENSSTUG00000011715)	TIMM22 (ENSSTUG00000011756)	ABR (ENSSTUG00000011857)	ENSSTUG00000016705	aspa (ENSSTUG00000016720)	zgc:85789 (ENSSTUG00000016825)	AKAP10 (ENSSTUG00000016877)	ENSSTUG00000016911	ENSSTUG00000016928	cltca (ENSSTUG00000017001)	ptrh2 (ENSSTUG00000018991)	VMP1 (ENSSTUG00000019009)	ENSSTUG00000019094 ##22	rnft1 (ENSSTUG00000019450)	med13a (ENSSTUG00000019529)	ENSSTUG00000020980	ENSSTUG00000020996	AUTS2 (ENSSTUG00000021010)	cxadr (ENSSTUG00000021277)	btg3 (ENSSTUG00000021287)	zgc:110006 (ENSSTUG00000021309)	ripk4 (ENSSTUG00000021325)	PRDM15 (ENSSTUG00000021344)	C2CD2 (ENSSTUG00000021492)	atg101 (ENSSTUG00000016804)	ZBTB21 (ENSSTUG00000016813)	ENSSTUG00000016821	mogat2 (ENSSTUG00000016827)
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000003967	adora2b (ENSSSAG00000003962)	ENSSSAG00000003917	ENSSSAG00000003899	ENSSSAG00000001855	ENSSSAG00000001742	zgc:85789 (ENSSSAG00000001728)	ENSSSAG00000001634	ENSSSAG00000118930	ENSSSAG00000001611	ENSSSAG00000120532	cltca (ENSSSAG00000000892)	ptrh2 (ENSSSAG00000000541)	ENSSSAG00000117760	ENSSSAG00000098489	ENSSSAG00000076220 ##22	rnft1 (ENSSSAG00000076196)	med13a (ENSSSAG00000073075)	ENSSSAG00000072966	ENSSSAG00000072299	ENSSSAG00000072270	cxadr (ENSSSAG00000116551)	ENSSSAG00000095429	ENSSSAG00000107762	RIPK4 (ENSSSAG00000072251)	ENSSSAG00000108936	ENSSSAG00000072201	C2CD2 (ENSSSAG00000072184)	atg101 (ENSSSAG00000072181)	ENSSSAG00000112286	umodl1 (ENSSSAG00000072174)
Huchen	MODERN SPECIES	779											ENSHHUG00000029525	ENSHHUG00000029533	cltca (ENSHHUG00000029538)	ptrh2 (ENSHHUG00000029646)	VMP1 (ENSHHUG00000029688)	ENSHHUG00000029713 ##22	rnft1 (ENSHHUG00000029756)	med13a (ENSHHUG00000029764)	ENSHHUG00000029844	ENSHHUG00000029853	ENSHHUG00000029858
Salmoninae	ANCESTRAL SPECIES	62									ENSGT00390000017214.c	ENSGT00390000015077.j	ENSGT00990000203589.a.a.a.b	ENSGT00390000018151.h	ENSGT00950000183166.a.a.a.b.e.b.f.b	ENSGT00390000015991.w	ENSGT00390000007230.a.b	ENSGT00940000155062.b.d.b.b ##22	ENSGT00940000156740.x	ENSGT00390000013680.b.a.d	ENSGT00390000011888	ENSGT00940000154823.e.a	ENSGT00940000154829.i.a.f	ENSGT00950000182952.A.b.c	ENSGT00390000002429.f	ENSGT00940000159908.j	ENSGT00940000157890.q	ENSGT00530000063764.a.d	ENSGT00390000016511.l	ENSGT00940000161028.d	ENSGT00940000159975.b	ENSGT00530000063947.C.d.d	ENSGT01030000234582.e.b.d
Huchen	MODERN SPECIES	987												lhx1a (ENSHHUG00000039996)	ENSHHUG00000039972	ptrh2 (ENSHHUG00000039964)	VMP1 (ENSHHUG00000039958)	ENSHHUG00000039861 ##22	rnft1 (ENSHHUG00000039835)
Salmoninae_a	ANCESTRAL SPECIES	55	ENSGT00390000018434	ENSGT00940000155093.b.vb	ENSGT00390000017523.a	ENSGT01030000234555.a.a.a.c.a.q.a	ENSGT00940000153592.B.a.x	ENSGT00390000016067.f	ENSGT00990000205129	ENSGT00940000153491.b.b.a.c.b	ENSGT00390000017214.c	ENSGT00390000015077.j	ENSGT00990000203589.a.a.a.b	ENSGT00390000018151.h	ENSGT00950000183166.a.a.a.b.e.b.f.b	ENSGT00390000015991.w	ENSGT00390000007230.a.b	ENSGT00940000155062.b.d.b.b ##22	ENSGT00940000156740.x	ENSGT00390000013680.b.a.d	ENSGT00390000011888	ENSGT00940000154823.e.a	ENSGT00940000154829.i.a.f	ENSGT00950000182952.A.b.c	ENSGT00390000002429.f	ENSGT00940000159908.j	ENSGT00940000157890.q	ENSGT00530000063764.a.d	ENSGT00390000016511.l	ENSGT00940000161028.d	ENSGT00940000159975.b	ENSGT00530000063947.C.d.d	ENSGT01030000234582.e.b.d
Salmo	ANCESTRAL SPECIES	13	ENSGT00390000003183.x	ENSGT00390000018434	ENSGT00940000155093.b.vb	ENSGT00390000017523.a	ENSGT01030000234555.a.a.a.c.a.q.a	ENSGT00940000153592.B.a.x	ENSGT00390000016067.f	ENSGT00940000153491.b.b.a.c.b	ENSGT00390000017214.c	ENSGT00390000015077.j	ENSGT00990000203589.a.a.a.b	ENSGT00390000018151.h	ENSGT00950000183166.a.a.a.b.e.b.f.b	ENSGT00390000015991.w	ENSGT00390000007230.a.b	ENSGT00940000155062.b.d.b.b ##22	ENSGT00940000156740.x	ENSGT00390000013680.b.a.d	ENSGT00390000011888	ENSGT00940000154823.e.a	ENSGT00940000154829.i.a.f	ENSGT00950000182952.A.b.c	ENSGT00390000002429.f	ENSGT00940000159908.j	ENSGT00940000157890.q	ENSGT00530000063764.a.d	ENSGT00390000016511.l	ENSGT00940000161028.d	ENSGT00940000159975.b	ENSGT00530000063947.C.d.d	ENSGT01030000234582.e.b.d
Atlantic salmon	MODERN SPECIES	4	zswim7 (ENSSSAG00000048680)	adora2b (ENSSSAG00000093669)	ENSSSAG00000121257	ENSSSAG00000100834	ENSSSAG00000048700	TIM22 (ENSSSAG00000048705)	ENSSSAG00000048882	ENSSSAG00000064271	ENSSSAG00000064296	ENSSSAG00000119915	ENSSSAG00000088536	cltca (ENSSSAG00000064444)	ptrh2 (ENSSSAG00000069376)	ENSSSAG00000069379	ENSSSAG00000091537	ENSSSAG00000069400 ##22	rnft1 (ENSSSAG00000070020)	ENSSSAG00000106850	med13a (ENSSSAG00000070166)	ints2 (ENSSSAG00000083939)	ENSSSAG00000117357	ENSSSAG00000074056	cxadr (ENSSSAG00000103314)	ENSSSAG00000072259	RIPK4 (ENSSSAG00000075149)	ENSSSAG00000075157	C2CD2 (ENSSSAG00000103293)	ENSSSAG00000106354	umodl1 (ENSSSAG00000075208)	ENSSSAG00000075205	ENSSSAG00000088580
River trout	MODERN SPECIES	6	ncor1 (ENSSTUG00000013753)	zswim7 (ENSSTUG00000014972)	adora2b (ENSSTUG00000014986)	SPECC1 (ENSSTUG00000015003)	ENSSTUG00000015062	ENSSTUG00000015143	zgc:85789 (ENSSTUG00000016858)	AKAP10 (ENSSTUG00000016934)	ENSSTUG00000017888	ENSSTUG00000017895	cltca (ENSSTUG00000017945)	ptrh2 (ENSSTUG00000018545)	ENSSTUG00000018549	VMP1 (ENSSTUG00000018553)	ENSSTUG00000018578	ENSSTUG00000018596 ##22	rnft1 (ENSSTUG00000018877)	med13a (ENSSTUG00000018954)	ENSSTUG00000019600	ints2 (ENSSTUG00000019625)	ENSSTUG00000020439	AUTS2 (ENSSTUG00000020449)	cxadr (ENSSTUG00000020542)	btg3 (ENSSTUG00000020548)	zgc:110006 (ENSSTUG00000020562)	ripk4 (ENSSTUG00000020579)	PRDM15 (ENSSTUG00000020587)	C2CD2 (ENSSTUG00000020679)	atg101 (ENSSTUG00000020723)	ZBTB21 (ENSSTUG00000020731)	umodl1 (ENSSTUG00000023381)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00390000018434	ENSGT00940000155093.b.vb	ENSGT00390000017523.a	ENSGT01030000234555.a.a.a.c.a.q.a	ENSGT00940000153592.B.a.x	ENSGT00390000016067.f	ENSGT00990000205129	ENSGT00940000153491.b.b.a.c.b	ENSGT00390000017214.c	ENSGT00390000015077.j	ENSGT00990000203589.a.a.a.b	ENSGT00390000018151.h	ENSGT00950000183166.a.a.a.b.e.b.f.b	ENSGT00390000015991.w	ENSGT00390000007230.a.b	ENSGT00940000155062.b.d.b.b ##22	ENSGT00940000156740.x	ENSGT00390000013680.b.a.d	ENSGT00390000011888.c	ENSGT00940000154823.e.a	ENSGT00940000154829.i.a.f	ENSGT00950000182952.A.b.c	ENSGT00390000002429.f	ENSGT00940000159908.j	ENSGT00940000157890.q	ENSGT00530000063764.a.d	ENSGT00390000016511.l	ENSGT00940000161028.d	ENSGT00940000159975.b	ENSGT00530000063947.C.d.d	ENSGT01030000234582.e.b.d
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000059710	ENSOMYG00000043745	ENSOMYG00000024049	ENSOMYG00000041733	ENSOMYG00000041492	ENSOMYG00000041273	ENSOMYG00000060533	ENSOMYG00000071231	ENSOMYG00000041244	ENSOMYG00000041236	ENSOMYG00000055010	cltca (ENSOMYG00000041153)	ptrh2 (ENSOMYG00000041111)	ENSOMYG00000041106	ENSOMYG00000048146	ENSOMYG00000040837 ##22	ENSOMYG00000062411	rnft1 (ENSOMYG00000040786)	med13a (ENSOMYG00000040547)	ints2 (ENSOMYG00000040354)	ENSOMYG00000039918	cxadr (ENSOMYG00000039794)	btg3 (ENSOMYG00000039779)	ENSOMYG00000039753	ENSOMYG00000058851	RIPK4 (ENSOMYG00000039676)	PRDM15 (ENSOMYG00000068439)	C2CD2 (ENSOMYG00000039572)	atg101 (ENSOMYG00000039557)	ZBTB21 (ENSOMYG00000039537)	ENSOMYG00000039432
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00390000018434	ENSGT00940000155093.b.vb	ENSGT00390000017523.a	ENSGT01030000234555.a.a.a.c.a.q.a	ENSGT00940000153592.B.a.x	ENSGT00390000016067.f	ENSGT00990000205129	ENSGT00940000153491.b.b.a.c.b	ENSGT00390000017214.c	ENSGT00390000015077.j	ENSGT00990000203589.a.a.a.b	ENSGT00390000018151.h	ENSGT00950000183166.a.a.a.b.e.b.f.b	ENSGT00390000015991.w	ENSGT00390000007230.a.b	ENSGT00940000155062.b.d.b.b ##22	ENSGT00940000156740.x	ENSGT00390000013680.b.a.d	ENSGT00390000011888.c	ENSGT00940000154823.e.a	ENSGT00940000154829.i.a.f	ENSGT00950000182952.A.b.c	ENSGT00390000002429.f	ENSGT00940000159908.j	ENSGT00940000157890.q	ENSGT00530000063764.a.d	ENSGT00390000016511.l	ENSGT00940000161028.d	ENSGT00940000159975.b	ENSGT00530000063947.C.d.d	ENSGT01030000234582.e.b.d
Chinook salmon	MODERN SPECIES	33	ncor1 (ENSOTSG00005035193)	zswim7 (ENSOTSG00005035163)	adora2b (ENSOTSG00005035162)	SPECC1 (ENSOTSG00005035161)	TIMM22 (ENSOTSG00005035160)	ENSOTSG00005035159	ABR (ENSOTSG00005026479)	zgc:85789 (ENSOTSG00005026466)	AKAP10 (ENSOTSG00005026463)	ENSOTSG00005026460	ENSOTSG00005026457	ENSOTSG00005026453	cltca (ENSOTSG00005026215)	ptrh2 (ENSOTSG00005026201)	ENSOTSG00005026199	ENSOTSG00005026104 ##22	rnft1 (ENSOTSG00005026103)	ints2 (ENSOTSG00005041108)	AUTS2 (ENSOTSG00005041105)	ENSOTSG00005041103	cxadr (ENSOTSG00005041102)	btg3 (ENSOTSG00005041099)	zgc:110006 (ENSOTSG00005041097)	ripk4 (ENSOTSG00005041095)	PRDM15 (ENSOTSG00005041093)	C2CD2 (ENSOTSG00005041092)	atg101 (ENSOTSG00005041088)	ZBTB21 (ENSOTSG00005041087)	umodl1 (ENSOTSG00005041085)	ENSOTSG00005041083	mogat2 (ENSOTSG00005041081)
Coho salmon	MODERN SPECIES	26	ncor1 (ENSOKIG00005025038)	zswim7 (ENSOKIG00005024904)	adora2b (ENSOKIG00005024897)	SPECC1 (ENSOKIG00005024878)	TIMM22 (ENSOKIG00005024857)	ENSOKIG00005024842	ABR (ENSOKIG00005020014)	zgc:85789 (ENSOKIG00005019734)	ENSOKIG00005019725	AKAP10 (ENSOKIG00005018678)	ENSOKIG00005018591	ENSOKIG00005018585	cltca (ENSOKIG00005015984)	ptrh2 (ENSOKIG00005015864)	ENSOKIG00005015845	ENSOKIG00005014899 ##22	ENSOKIG00005014840	rnft1 (ENSOKIG00005014815)	ENSOKIG00005014806	med13a (ENSOKIG00005013432)	ints2 (ENSOKIG00005012876)	AUTS2 (ENSOKIG00005011653)	cxadr (ENSOKIG00005011492)	BTG3 (ENSOKIG00005011476)	zgc:110006 (ENSOKIG00005011457)	ripk4 (ENSOKIG00005011440)	ENSOKIG00005011397	ENSOKIG00005011384	C2CD2 (ENSOKIG00005011373)	atg101 (ENSOKIG00005011364)	ZBTB21 (ENSOKIG00005011351)
Northern pike	MODERN SPECIES	6	zswim7 (ENSELUG00000022232)	SPECC1 (ENSELUG00000022344)	timm22 (ENSELUG00000033173)	ABR (ENSELUG00000022656)	ENSELUG00000033538	ENSELUG00000027338	ENSELUG00000029329	aspa (ENSELUG00000022701)	lg07h11orf54 (ENSELUG00000022777)	AKAP10 (ENSELUG00000022856)	ENSELUG00000022872	ENSELUG00000022891	cltca (ENSELUG00000022973)	ptrh2 (ENSELUG00000023013)	VMP1 (ENSELUG00000023055)	ENSELUG00000023112 ##22	rnft1 (ENSELUG00000023126)	med13a (ENSELUG00000023312)	ints2 (ENSELUG00000023402)	AUTS2 (ENSELUG00000023517)	ENSELUG00000027999	cxadr (ENSELUG00000023548)	zgc:110006 (ENSELUG00000023572)	ENSELUG00000023575	ripk4 (ENSELUG00000023611)	PRDM15 (ENSELUG00000023702)	C2CD2 (ENSELUG00000023790)	atg101 (ENSELUG00000023813)	ZBTB21 (ENSELUG00000023816)	ENSELUG00000023897	mogat2 (ENSELUG00000023919)
Otomorpha	ANCESTRAL SPECIES	192												ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00940000158249.q.b	ENSGT00390000015119	ENSGT00950000182834.A.a.b.d	ENSGT01030000234773	ENSGT01100000263938	ENSGT00390000017253	ENSGT00390000017147	ENSGT00390000000417.a.a.b.a.a	ENSGT00940000180813
Clupeiformes	ANCESTRAL SPECIES	167													ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00950000182952.A.b	ENSGT00940000158249.q.b	ENSGT00390000015119	ENSGT00950000182834.A.a.b.d	ENSGT01030000234773	ENSGT01100000263938	ENSGT00390000017253	ENSGT00390000017147	ENSGT00390000000417.a.a.b.a.a	ENSGT00390000001738
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000016851	ENSCHAG00000016860	cfap298 (ENSCHAG00000016864)	synj1 (ENSCHAG00000016950)	SLC46A3 (ENSCHAG00000017815)	ENSCHAG00000017829	sod1 (ENSCHAG00000017872)	TIAM1 (ENSCHAG00000018070)	GRIK1 (ENSCHAG00000018442)	bach1b (ENSCHAG00000020662)	ENSCHAG00000020667	cct8 (ENSCHAG00000020688)	ENSCHAG00000020837	cltca (ENSCHAG00000020897)	ptrh2 (ENSCHAG00000022697)	ENSCHAG00000022732 ##22	rnft1 (ENSCHAG00000023238)	med13a (ENSCHAG00000023322)	ercc6l (ENSCHAG00000024713)	AUTS2 (ENSCHAG00000024732)	cxadr (ENSCHAG00000024899)	btg3 (ENSCHAG00000024909)	ENSCHAG00000024911	ehd1b (ENSCHAG00000024920)	cnih2 (ENSCHAG00000024943)	ENSCHAG00000024956	ENSCHAG00000024958	MRPL49 (ENSCHAG00000024967)	znhit2 (ENSCHAG00000024972)	tm7sf2 (ENSCHAG00000024979)	vps51 (ENSCHAG00000025001)
Denticle herring	MODERN SPECIES	16	fdx1b (ENSDCDG00000019095)	ENSDCDG00000019097	ENSDCDG00000019110	ENSDCDG00000019200	AR (ENSDCDG00000019212)	OPHN1 (ENSDCDG00000019380)	yipf6 (ENSDCDG00000022325)	stard8 (ENSDCDG00000022374)	ENSDCDG00000023802	steep1 (ENSDCDG00000023805)	efnb1 (ENSDCDG00000023808)	PCYOX1L (ENSDCDG00000023811)	cltca (ENSDCDG00000023857)	ptrh2 (ENSDCDG00000026632)	VMP1 (ENSDCDG00000026638)	ENSDCDG00000026943 ##22	rnft1 (ENSDCDG00000026969)	med13a (ENSDCDG00000026998)	ints2 (ENSDCDG00000027208)	AUTS2 (ENSDCDG00000027228)	cxadr (ENSDCDG00000027254)	btg3 (ENSDCDG00000027255)	ehd1b (ENSDCDG00000027256)	wdr74 (ENSDCDG00000027260)	cnih2 (ENSDCDG00000027262)	ENSDCDG00000027264	ENSDCDG00000027265	MRPL49 (ENSDCDG00000027267)	znhit2 (ENSDCDG00000027268)	tm7sf2 (ENSDCDG00000027273)	vps51 (ENSDCDG00000027374)
Otophysi	ANCESTRAL SPECIES	166										ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00940000177608	ENSGT00390000015991	ENSGT00390000007230.a	ENSGT00940000155062.b.c ##22	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00390000013680.b.b	ENSGT00940000154823	ENSGT00940000154829.i.a	ENSGT00940000158249.q.b	ENSGT00390000015119	ENSGT00950000182834.A.a.b.d	ENSGT01030000234773	ENSGT01100000263938	ENSGT00390000017253	ENSGT00390000017147	ENSGT00390000000417.a.a.b.a.a	ENSGT00940000180813
Cyprinoidei	ANCESTRAL SPECIES	6	ENSGT00390000005544	ENSGT00940000155156.b	ENSGT00520000055616.a	ENSGT00390000016589	ENSGT00390000013087	ENSGT00950000183068.a.b.c	ENSGT00940000156527.c	ENSGT00940000164443.a.a.a	ENSGT00940000156881.h	ENSGT00940000156631.B	ENSGT00940000158592	ENSGT00800000125277.a	ENSGT00950000182952.A.b	ENSGT00950000183166.a.a.a.b.e.b	ENSGT00390000015991.z	ENSGT00940000155062.b.d.b ##22	ENSGT00940000156740	ENSGT00390000013680.b.a	ENSGT00390000011888	ENSGT00940000154829.i.a	ENSGT00940000158249.q.b	ENSGT00390000015119	ENSGT00950000182834.A.a.b.d	ENSGT01030000234773	ENSGT01100000263938	ENSGT00390000017253	ENSGT00390000017147	ENSGT00390000000417.a.a.b.a.a	ENSGT00940000180813	ENSGT00390000001738	ENSGT00530000063721.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	458							ENSGT00940000156881.h.b	ENSGT00940000156631.B.b	ENSGT00940000158592.g	ENSGT00940000180111	ENSGT00800000125277.b.b	ENSGT00800000125277.a.b	ENSGT00950000182952.A.b.b	ENSGT00950000183166.a.a.a.b.e.b.g	ENSGT00390000015991.y	ENSGT00940000155062.b.d.b.c ##22	ENSGT00940000156740.v	ENSGT00390000013680.b.a.f	ENSGT00390000011888.a.a	ENSGT00940000154823.m.b	ENSGT00940000154829.i.a.h	ENSGT00940000158249.q.b.b	ENSGT00390000015119.b	ENSGT00950000182834.A.a.b.d.f	ENSGT01030000234773.b	ENSGT01100000263938.a.a	ENSGT00390000007479.j.a	ENSGT00390000017253.w	ENSGT00390000017147.a	ENSGT00390000001738.b	ENSGT00530000063721.B.b
Goldfish	MODERN SPECIES	28	mrpl48 (ENSCARG00000015135)	ucp2 (ENSCARG00000015127)	ENSCARG00000015116	ENSCARG00000015058	slc1a3b (ENSCARG00000015042)	nipblb (ENSCARG00000014888)	PTRH2 (ENSCARG00000014844)	alcama (ENSCARG00000014386)	CBLB (ENSCARG00000014271)	ints2 (ENSCARG00000013809)	BBX (ENSCARG00000013768)	ENSCARG00000013758	btg3 (ENSCARG00000013751)	cltca (ENSCARG00000011125)	PTRH2 (ENSCARG00000011040)	ENSCARG00000009681 ##22	rnft1 (ENSCARG00000009638)	med13a (ENSCARG00000009000)	ints2 (ENSCARG00000008663)	AUTS2 (ENSCARG00000007769)	cxadr (ENSCARG00000007678)	ehd1b (ENSCARG00000007667)	wdr74 (ENSCARG00000007643)	cnih2 (ENSCARG00000007632)	faub (ENSCARG00000007624)	MRPL49 (ENSCARG00000007615)	znhit2 (ENSCARG00000007612)	tm7sf2 (ENSCARG00000007042)	vps51 (ENSCARG00000006794)	frmd8 (ENSCARG00000006664)	rab1bb (ENSCARG00000006629)
Cyprininae_a	ANCESTRAL SPECIES	132	ENSGT00520000055616.a.g	ENSGT00390000016589.a	ENSGT00940000155843.y.a	ENSGT00950000183068.a.b.c.a	ENSGT00940000156527.c.b	ENSGT00940000164443.a.a.a.u	ENSGT00940000156881.h.b	ENSGT00940000156631.B.b	ENSGT00940000158592.g	ENSGT00940000180111	ENSGT00800000125277.b.b	ENSGT00800000125277.a.b	ENSGT00950000182952.A.b.b	ENSGT00950000183166.a.a.a.b.e.b.g	ENSGT00390000015991.y	ENSGT00940000155062.b.d.b.c ##22	ENSGT00940000156740.v	ENSGT00390000013680.b.a.f	ENSGT00390000011888.a.a	ENSGT00940000154823.m.b	ENSGT00940000154829.i.a.h	ENSGT00940000158249.q.b.b	ENSGT00390000015119.b	ENSGT00950000182834.A.a.b.d.f	ENSGT01030000234773.b	ENSGT01100000263938.a.a	ENSGT00390000007479.j.a	ENSGT00390000017147.a	ENSGT00940000180813	ENSGT00390000001738.b	ENSGT00530000063721.B.b
Common carp reference	MODERN SPECIES	32	ENSCCRG00000078317	tmem126a (ENSCCRG00000011765)	CREBZF (ENSCCRG00000013131)	ENSCCRG00000013126	picalma (ENSCCRG00000011380)	ZPLD1 (ENSCCRG00000032231)	ENSCCRG00000074724	alcama (ENSCCRG00000028043)	ENSCCRG00000030807	CBLB (ENSCCRG00000027869)	BBX (ENSCCRG00000069468)	ENSCCRG00000040418	btg3 (ENSCCRG00000040412)	cltca (ENSCCRG00000065499)	ENSCCRG00000079540	ENSCCRG00000039568 ##22	rnft1 (ENSCCRG00000070929)	med13a (ENSCCRG00000011590)	ints2 (ENSCCRG00000011487)	ENSCCRG00000027252	cxadr (ENSCCRG00000053575)	ehd1b (ENSCCRG00000024905)	wdr74 (ENSCCRG00000022191)	cnih2 (ENSCCRG00000025144)	ENSCCRG00000059844	faub (ENSCCRG00000025151)	znhit2 (ENSCCRG00000064969)	vps51 (ENSCCRG00000025167)	frmd8 (ENSCCRG00000018385)	ENSCCRG00000023552	rab1bb (ENSCCRG00000023555)
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3980																ENSSGRG00000003887 ##22	ENSSGRG00000003886 ##22
Golden-line barbel	MODERN SPECIES	3980															ENSSGRG00000003887 ##22	ENSSGRG00000003886 ##22
Golden-line barbel	MODERN SPECIES	31	CREBZF (ENSSGRG00000009628)	ENSSGRG00000009626	picalma (ENSSGRG00000007145)	ZPLD1 (ENSSGRG00000007100)	ENSSGRG00000007099	alcama (ENSSGRG00000006997)	CBLB (ENSSGRG00000006740)	BBX (ENSSGRG00000006735)	ENSSGRG00000006734	ENSSGRG00000006733	ENSSGRG00000006731	ENSSGRG00000006730	btg3 (ENSSGRG00000006724)	PTRH2 (ENSSGRG00000006722)	cltca (ENSSGRG00000001518)	ENSSGRG00000054144 ##22	rnft1 (ENSSGRG00000054143)	med13a (ENSSGRG00000054077)	ints2 (ENSSGRG00000054016)	PTPRM (ENSSGRG00000053191)
Cyprininae	ANCESTRAL SPECIES	128	ENSGT00940000155156.b.a	ENSGT00390000016589.b.b	ENSGT00940000155843.y.b	ENSGT00390000013087	ENSGT00950000183068.a.b.c.b	ENSGT00940000156527.c.a	ENSGT00940000164443.a.a.a.v	ENSGT00940000156881.h.a	ENSGT00940000156631.B.a	ENSGT00940000158592.h	ENSGT00800000125277.b.a	ENSGT00800000125277.a.a	ENSGT00950000182952.A.b.a	ENSGT00950000183166.a.a.a.b.e.b.h	ENSGT00390000015991.z	ENSGT00940000155062.b.d.b.d ##22	ENSGT00940000156740.u	ENSGT00390000013680.b.a.e	ENSGT00390000011888.a.b	ENSGT00940000160709.y	ENSGT00940000154823.m.a	ENSGT00940000154829.i.a.g	ENSGT00940000158249.q.b.a	ENSGT00390000015119.a	ENSGT00950000182834.A.a.b.d.e	ENSGT01030000234773.a	ENSGT00390000007479.j.b	ENSGT00390000017253.x	ENSGT00390000017147.b	ENSGT00390000000417.a.a.b.a.a	ENSGT00390000001738.a
Goldfish	MODERN SPECIES	77											ENSCARG00000069573	ENSCARG00000069572	btg3 (ENSCARG00000069570)	ptrh2 (ENSCARG00000069569)	cltca (ENSCARG00000069513)	ENSCARG00000069453 ##22	rnft1 (ENSCARG00000069433)	med13a (ENSCARG00000069188)	ints2 (ENSCARG00000068804)
Cyprininae_a	ANCESTRAL SPECIES	102	ENSGT00940000155156.b.a	ENSGT00390000016589.b.b	ENSGT00940000155843.y.b	ENSGT00390000013087	ENSGT00950000183068.a.b.c.b	ENSGT00940000156527.c.a	ENSGT00940000164443.a.a.a.v	ENSGT00940000156881.h.a	ENSGT00940000156631.B.a	ENSGT00940000158592.h	ENSGT00800000125277.b.a	ENSGT00800000125277.a.a	ENSGT00950000182952.A.b.a	ENSGT00950000183166.a.a.a.b.e.b.h	ENSGT00390000015991.z	ENSGT00940000155062.b.d.b.d ##22	ENSGT00940000156740.u	ENSGT00390000013680.b.a.e	ENSGT00390000011888.a.b	ENSGT00940000154823.m.a	ENSGT00940000154829.i.a.g	ENSGT00940000158249.q.b.a	ENSGT00390000015119.a	ENSGT00950000182834.A.a.b.d.e	ENSGT01030000234773.a	ENSGT00390000007479.j.b	ENSGT01100000263938.b	ENSGT00390000017253.x	ENSGT00390000017147.b	ENSGT00390000000417.a.a.b.a.a	ENSGT00390000001738.a
Common carp reference	MODERN SPECIES	24	dlg2 (ENSCCRG00000036750)	CREBZF (ENSCCRG00000011761)	ENSCCRG00000011758	ccdc83 (ENSCCRG00000011745)	picalma (ENSCCRG00000011792)	ZPLD1 (ENSCCRG00000011372)	ENSCCRG00000011368	alcama (ENSCCRG00000012239)	CBLB (ENSCCRG00000012330)	BBX (ENSCCRG00000066044)	ENSCCRG00000062848	ENSCCRG00000037990	btg3 (ENSCCRG00000052780)	cltca (ENSCCRG00000066395)	ptrh2 (ENSCCRG00000075208)	ENSCCRG00000011203 ##22	rnft1 (ENSCCRG00000074540)	med13a (ENSCCRG00000035951)	ints2 (ENSCCRG00000035861)	ENSCCRG00000020760	cxadr (ENSCCRG00000053043)	ehd1b (ENSCCRG00000022179)	wdr74 (ENSCCRG00000024922)	cnih2 (ENSCCRG00000078329)	faub (ENSCCRG00000022403)	ENSCCRG00000065160	ENSCCRG00000022401	znhit2 (ENSCCRG00000074415)	vps51 (ENSCCRG00000018372)	frmd8 (ENSCCRG00000023247)	rab1bb (ENSCCRG00000018440)
Golden-line barbel	MODERN SPECIES	355	CREBZF (ENSSGRG00000011004)	CREBZF (ENSSGRG00000011003)	ccdc83 (ENSSGRG00000010998)	ENSSGRG00000010980	ZPLD1 (ENSSGRG00000010930)	ENSSGRG00000010928	alcama (ENSSGRG00000010780)	CBLB (ENSSGRG00000010705)	BBX (ENSSGRG00000010704)	ENSSGRG00000010702	ENSSGRG00000010700	ENSSGRG00000010699	btg3 (ENSSGRG00000010698)	cltca (ENSSGRG00000006860)	ptrh2 (ENSSGRG00000006788)	ENSSGRG00000006539 ##22	rnft1 (ENSSGRG00000006525)	med13a (ENSSGRG00000005731)	ENSSGRG00000005670	AUTS2 (ENSSGRG00000002291)	cxadr (ENSSGRG00000002270)	ehd1b (ENSSGRG00000002236)	wdr74 (ENSSGRG00000002234)	cnih2 (ENSSGRG00000002231)	ENSSGRG00000002227	faub (ENSSGRG00000002221)	ENSSGRG00000002226	MRPL49 (ENSSGRG00000002220)	znhit2 (ENSSGRG00000002218)	tm7sf2 (ENSSGRG00000002213)	vps51 (ENSSGRG00000001813)
Zebrafish	MODERN SPECIES	1	tmem126a (ENSDARG00000014506)	CREBZF (ENSDARG00000089787)	ENSDARG00000061956	ccdc83 (ENSDARG00000077179)	picalma (ENSDARG00000012866)	ZPLD1 (ENSDARG00000061835)	ENSDARG00000088315	alcama (ENSDARG00000026531)	CBLB (ENSDARG00000015199)	BBX (ENSDARG00000012699)	ENSDARG00000092578	ENSDARG00000103049	btg3 (ENSDARG00000069065)	cltca (ENSDARG00000043493)	ptrh2 (ENSDARG00000077339)	ENSDARG00000018399 ##22	rnft1 (ENSDARG00000015917)	med13a (ENSDARG00000053884)	ints2 (ENSDARG00000069085)	ENSDARG00000087639	AUTS2 (ENSDARG00000056427)	cxadr (ENSDARG00000043658)	ehd1b (ENSDARG00000014793)	wdr74 (ENSDARG00000061993)	cnih2 (ENSDARG00000043662)	ENSDARG00000114036	uqcc3 (ENSDARG00000093382)	si:dkey-88p24.11 (ENSDARG00000092787)	zgc:193742 (ENSDARG00000092387)	faub (ENSDARG00000043663)	MRPL49 (ENSDARG00000075422)
Spotted gar	MODERN SPECIES	661	mrps17 (ENSLOCG00000004118)	nf2b (ENSLOCG00000004088)	sbds (ENSLOCG00000004073)	tyw1 (ENSLOCG00000004035)	CALN1 (ENSLOCG00000004017)	GALNT17 (ENSLOCG00000003993)	AUTS2 (ENSLOCG00000003979)	ENSLOCG00000003962	zgc:85789 (ENSLOCG00000003948)	ENSLOCG00000003933	DHX40 (ENSLOCG00000003916)	cltca (ENSLOCG00000003892)	ptrh2 (ENSLOCG00000017426)	vmp1 (ENSLOCG00000003867)	tubd1 (ENSLOCG00000003847)	rps6kb1b (ENSLOCG00000003823) ##22	rnft1 (ENSLOCG00000003795)	ENSLOCG00000003767	med13b (ENSLOCG00000003727)	ints2 (ENSLOCG00000003709)	AKAP10 (ENSLOCG00000003685)	ENSLOCG00000003673	ENSLOCG00000003659	aspa (ENSLOCG00000003642)	ENSLOCG00000003633	ENSLOCG00000003616	abr (ENSLOCG00000003587)	TIMM22 (ENSLOCG00000003575)	SPECC1 (ENSLOCG00000003564)	adora2b (ENSLOCG00000003553)	zswim7 (ENSLOCG00000003544)
Reedfish	MODERN SPECIES	16	mrps17 (ENSECRG00000010225)	nf2b (ENSECRG00000010195)	sbds (ENSECRG00000010179)	tyw1 (ENSECRG00000010163)	CALN1 (ENSECRG00000010148)	GALNT17 (ENSECRG00000010128)	AUTS2 (ENSECRG00000010102)	ENSECRG00000010079	zgc:85789 (ENSECRG00000010068)	ENSECRG00000010053	DHX40 (ENSECRG00000010026)	ENSECRG00000009941	ptrh2 (ENSECRG00000009891)	vmp1 (ENSECRG00000009872)	tubd1 (ENSECRG00000009859)	rps6kb1b (ENSECRG00000009842) ##22	rnft1 (ENSECRG00000009822)	ENSECRG00000009817	ints2 (ENSECRG00000009696)	AKAP10 (ENSECRG00000009614)	ENSECRG00000009599	ENSECRG00000009586	aspa (ENSECRG00000009575)	ABR (ENSECRG00000009333)	TIMM22 (ENSECRG00000009193)	SPECC1 (ENSECRG00000009157)	adora2b (ENSECRG00000009144)	zswim7 (ENSECRG00000009135)	NCOR1 (ENSECRG00000009114)	ENSECRG00000009099	PIGL (ENSECRG00000009081)
Elephant shark	MODERN SPECIES	1640	dph1 (ENSCMIG00000019200)	ovca2 (ENSCMIG00000019188)	TRIM37 (ENSCMIG00000019056)	ppm1e (ENSCMIG00000019016)	rad51c (ENSCMIG00000019014)	ENSCMIG00000019009	ska2 (ENSCMIG00000019006)	ENSCMIG00000019005	SMG8 (ENSCMIG00000019003)	gdpd1 (ENSCMIG00000018999)	ENSCMIG00000018997	DHX40 (ENSCMIG00000018962)	ENSCMIG00000018685	ptrh2 (ENSCMIG00000018497)	vmp1 (ENSCMIG00000018489)	rps6kb1b (ENSCMIG00000018480) ##22	rnft1 (ENSCMIG00000018471)	ENSCMIG00000018468	ENSCMIG00000018464	ENSCMIG00000018461	ENSCMIG00000018460	mdh2 (ENSCMIG00000018430)	ENSCMIG00000018426	SLFN14 (ENSCMIG00000018424)	rffl (ENSCMIG00000018422)	rfc2 (ENSCMIG00000018372)	ENSCMIG00000018355	eif4h (ENSCMIG00000018354)	mybbp1a (ENSCMIG00000018350)	SPNS2 (ENSCMIG00000018344)	spns3 (ENSCMIG00000018342)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155062 #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	498									ENSEBUG00000000581	ENSEBUG00000012835	ENSEBUG00000015751	ENSEBUG00000003750	ENSEBUG00000015353	ENSEBUG00000011652	ENSEBUG00000015692	RPS6KB2 (ENSEBUG00000011589) #22	ENSEBUG00000007648
Hagfish	MODERN SPECIES	802							ENSEBUG00000001624	ENSEBUG00000013889	ENSEBUG00000005134	ENSEBUG00000009071	ENSEBUG00000004813	ENSEBUG00000009616	ENSEBUG00000005731	ENSEBUG00000011385	ENSEBUG00000003668	ENSEBUG00000001342 #22	ENSEBUG00000012049	mapk1 (ENSEBUG00000010853)	castor2 (ENSEBUG00000015989)	gal3st1a (ENSEBUG00000000840)	ENSEBUG00000006703	ENSEBUG00000015152	ENSEBUG00000007309	sf3a1 (ENSEBUG00000001285)	ENSEBUG00000005226	ENSEBUG00000013060