Vertebrata	ANCESTRAL SPECIES	1108															ENSGT01050000245095	ENSGT00940000155047 #22
Gnathostomata	ANCESTRAL SPECIES	61			ENSGT00940000154929.C	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00940000160497 #9	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000164516	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000164516	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Sarcopterygii	ANCESTRAL SPECIES	98	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000168208	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000164516	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B
Amniota	ANCESTRAL SPECIES	15	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B
Mammalia	ANCESTRAL SPECIES	68	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Theria	ANCESTRAL SPECIES	22	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572	ENSGT00940000159331.b
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Primates	ANCESTRAL SPECIES	2	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36	ENSGT00390000004985.b
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000154355.e.b #27	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36
Hominidae	ANCESTRAL SPECIES	22	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000154355.e.b #27	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00940000160047.t #13	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000154355.e.b #27	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a.e #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000163242.e #36	ENSGT00940000157461 #35
Gorilla	MODERN SPECIES	6	RSL24D1 (ENSGGOG00000005195) #7	RAB27A (ENSGGOG00000014519) #8	CCPG1 (ENSGGOG00000002361) #9	PIGB (ENSGGOG00000009248) #10	PIERCE2 (ENSGGOG00000040432) #11	DNAAF4 (ENSGGOG00000005429) #12	ENSGGOG00000041234 #13	PYGO1 (ENSGGOG00000043463) #14	PRTG (ENSGGOG00000026231) #15	ENSGGOG00000015628 #16	ENSGGOG00000041227 #17	RFX7 (ENSGGOG00000002118) #18	TEX9 (ENSGGOG00000015030) #19	MNS1 (ENSGGOG00000004668) #20	ZNF280D (ENSGGOG00000006070) #21	TCF12 (ENSGGOG00000008166) #22	ENSGGOG00000040721 #23	CGNL1 (ENSGGOG00000026524) #24	GCOM1 (ENSGGOG00000012125) #25	ALDH1A2 (ENSGGOG00000007661) #26	ENSGGOG00000040043 #27	AQP9 (ENSGGOG00000012151) #28	LIPC (ENSGGOG00000008125) #29	ADAM10 (ENSGGOG00000010649) #30	MINDY2 (ENSGGOG00000000256) #31	SLTM (ENSGGOG00000015866) #32	RNF111 (ENSGGOG00000017000) #33	CCNB2 (ENSGGOG00000007644) #34	MYO1E (ENSGGOG00000007653) #35	LDHAL6B (ENSGGOG00000022172) #36	ENSGGOG00000036165 #37
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00940000160047.t #13	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000154355.e.b #27	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a.e #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000163242.e #36	ENSGT00940000157461 #35
Pan	ANCESTRAL SPECIES	20	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00940000160047.t #13	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT00940000157298.b	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000154355.e.b #27	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a.f ##31	ENSGT00390000016607.a.e #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36
Bonobo	MODERN SPECIES	6	PIGBOS1 (ENSPPAG00000023425)	PIGB (ENSPPAG00000042876) #10	CCPG1 (ENSPPAG00000041408) #9	PIERCE2 (ENSPPAG00000042984) #11	DNAAF4 (ENSPPAG00000013865) #12	ENSPPAG00000031216 #13	PYGO1 (ENSPPAG00000031145) #14	PRTG (ENSPPAG00000034279) #15	ENSPPAG00000016223	ENSPPAG00000036985 #16	ENSPPAG00000034242	RFX7 (ENSPPAG00000039235) #18	TEX9 (ENSPPAG00000032005) #19	MNS1 (ENSPPAG00000033267) #20	ZNF280D (ENSPPAG00000034034) #21	TCF12 (ENSPPAG00000035109) #22	ENSPPAG00000040384 #23	CGNL1 (ENSPPAG00000031337) #24	ENSPPAG00000044087	ENSPPAG00000006446 #25	ALDH1A2 (ENSPPAG00000033733) #26	ENSPPAG00000027982 #27	AQP9 (ENSPPAG00000043955) #28	LIPC (ENSPPAG00000000168) #29	ADAM10 (ENSPPAG00000040346) #30	ENSPPAG00000006779	MINDY2 (ENSPPAG00000040407) #31	SLTM (ENSPPAG00000029308) #32	RNF111 (ENSPPAG00000023370) #33	CCNB2 (ENSPPAG00000037736) #34	MYO1E (ENSPPAG00000042211) #35
Chimpanzee	MODERN SPECIES	6	RSL24D1 (ENSPTRG00000007094) #7	RAB27A (ENSPTRG00000007095) #8	PIGBOS1 (ENSPTRG00000044984)	PIGB (ENSPTRG00000007096) #10	CCPG1 (ENSPTRG00000034458) #9	PIERCE2 (ENSPTRG00000052094) #11	DNAAF4 (ENSPTRG00000007098) #12	PYGO1 (ENSPTRG00000042720) #14	PRTG (ENSPTRG00000007101) #15	NEDD4 (ENSPTRG00000007102) #16	ENSPTRG00000045291	RFX7 (ENSPTRG00000007104) #18	TEX9 (ENSPTRG00000007105) #19	MNS1 (ENSPTRG00000007106) #20	ZNF280D (ENSPTRG00000007107) #21	TCF12 (ENSPTRG00000007109) #22	ENSPTRG00000051354 #23	CGNL1 (ENSPTRG00000007110) #24	ENSPTRG00000003397	ENSPTRG00000007112 #25	ALDH1A2 (ENSPTRG00000007113) #26	ENSPTRG00000045953 #27	AQP9 (ENSPTRG00000007114) #28	LIPC (ENSPTRG00000007115) #29	ADAM10 (ENSPTRG00000007116) #30	ENSPTRG00000040458	MINDY2 (ENSPTRG00000044903) ##31	SLTM (ENSPTRG00000007121) #32	RNF111 (ENSPTRG00000007122) #33	CCNB2 (ENSPTRG00000007123) #34	MYO1E (ENSPTRG00000007124) #35
Human	MODERN SPECIES	6	RSL24D1 (ENSG00000137876) #7	RAB27A (ENSG00000069974) #8	PIGBOS1 (ENSG00000225973)	PIGB (ENSG00000069943) #10	CCPG1 (ENSG00000260916) #9	PIERCE2 (ENSG00000261652) #11	DNAAF4 (ENSG00000256061) #12	PYGO1 (ENSG00000171016) #14	PRTG (ENSG00000166450) #15	NEDD4 (ENSG00000069869) #16	RFX7 (ENSG00000181827) #18	TEX9 (ENSG00000151575) #19	MNS1 (ENSG00000138587) #20	ZNF280D (ENSG00000137871) #21	ENSG00000285253	TCF12 (ENSG00000140262) #22	CGNL1 (ENSG00000128849) #24	MYZAP (ENSG00000263155) #25	GCOM1 (ENSG00000137878)	POLR2M (ENSG00000255529) ##25	ALDH1A2 (ENSG00000128918) #26	AQP9 (ENSG00000103569) #28	LIPC (ENSG00000166035) #29	ADAM10 (ENSG00000137845) #30	MINDY2 (ENSG00000128923) #31	RNF111 (ENSG00000157450) #33	SLTM (ENSG00000137776) #32	CCNB2 (ENSG00000157456) #34	MYO1E (ENSG00000157483) #35	LDHAL6B (ENSG00000171989) #36	FAM81A (ENSG00000157470)
Orangutan	MODERN SPECIES	6	RSL24D1 (ENSPPYG00000006495) #7	RAB27A (ENSPPYG00000006496) #8	CCPG1 (ENSPPYG00000006498) #9	PIGB (ENSPPYG00000006497) #10	PIERCE2 (ENSPPYG00000036881) #11	DNAAF4 (ENSPPYG00000030700) #12	PYGO1 (ENSPPYG00000006499) #14	PRTG (ENSPPYG00000006500) #15	ENSPPYG00000006501 #16	RFX7 (ENSPPYG00000006502) #18	ENSPPYG00000035953	ENSPPYG00000035319	TEX9 (ENSPPYG00000006503) #19	MNS1 (ENSPPYG00000037143) #20	ZNF280D (ENSPPYG00000006504) #21	TCF12 (ENSPPYG00000006505) #22	CGNL1 (ENSPPYG00000006506) #24	MYZAP (ENSPPYG00000006507) #25	POLR2M (ENSPPYG00000032331) ##25	ALDH1A2 (ENSPPYG00000006508) #26	AQP9 (ENSPPYG00000006510) #28	LIPC (ENSPPYG00000006511) #29	ADAM10 (ENSPPYG00000006512) #30	MINDY2 (ENSPPYG00000006514) #31	SLTM (ENSPPYG00000006515) #32	RNF111 (ENSPPYG00000006516) #33	CCNB2 (ENSPPYG00000006517) #34	MYO1E (ENSPPYG00000006518) #35	LDHAL6B (ENSPPYG00000006520) #36	FAM81A (ENSPPYG00000006521)	GTF2A2 (ENSPPYG00000006523)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	21	RSL24D1 (ENSNLEG00000006578) #7	RAB27A (ENSNLEG00000006592) #8	PIGB (ENSNLEG00000006602) #10	CCPG1 (ENSNLEG00000006611) #9	PIERCE2 (ENSNLEG00000029216) #11	ENSNLEG00000036099 #13	DNAAF4 (ENSNLEG00000006617) #12	PYGO1 (ENSNLEG00000006621) #14	PRTG (ENSNLEG00000006624) #15	ENSNLEG00000006630 #16	RFX7 (ENSNLEG00000006658) #18	ENSNLEG00000006663 #19	MNS1 (ENSNLEG00000006668) #20	ZNF280D (ENSNLEG00000006674) #21	ENSNLEG00000034499	ENSNLEG00000027523 #22	TCF12 (ENSNLEG00000006707) #22	CGNL1 (ENSNLEG00000006731) #24	ENSNLEG00000035285	ENSNLEG00000031086	SELENOP (ENSNLEG00000029119)	CCDC152 (ENSNLEG00000016687)	ENSNLEG00000033696	ENSNLEG00000031089	GHR (ENSNLEG00000016678)	FBXO4 (ENSNLEG00000016662)	RIMOC1 (ENSNLEG00000029700)	OXCT1 (ENSNLEG00000016656)	PLCXD3 (ENSNLEG00000030452)	C6 (ENSNLEG00000016610)	MROH2B (ENSNLEG00000016538)
Gibbon	MODERN SPECIES	21	RAB27A (ENSNLEG00000006592) #8	PIGB (ENSNLEG00000006602) #10	CCPG1 (ENSNLEG00000006611) #9	PIERCE2 (ENSNLEG00000029216) #11	ENSNLEG00000036099 #13	DNAAF4 (ENSNLEG00000006617) #12	PYGO1 (ENSNLEG00000006621) #14	PRTG (ENSNLEG00000006624) #15	ENSNLEG00000006630 #16	RFX7 (ENSNLEG00000006658) #18	ENSNLEG00000006663 #19	MNS1 (ENSNLEG00000006668) #20	ZNF280D (ENSNLEG00000006674) #21	ENSNLEG00000034499	ENSNLEG00000027523 #22	TCF12 (ENSNLEG00000006707) #22	CGNL1 (ENSNLEG00000006731) #24	ENSNLEG00000035285	ENSNLEG00000031086	SELENOP (ENSNLEG00000029119)	CCDC152 (ENSNLEG00000016687)	ENSNLEG00000033696	ENSNLEG00000031089	GHR (ENSNLEG00000016678)	FBXO4 (ENSNLEG00000016662)	RIMOC1 (ENSNLEG00000029700)	OXCT1 (ENSNLEG00000016656)	PLCXD3 (ENSNLEG00000030452)	C6 (ENSNLEG00000016610)	MROH2B (ENSNLEG00000016538)	C7 (ENSNLEG00000016515)
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000155174	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36
Rhinopithecus	ANCESTRAL SPECIES	281												ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb.a #34	ENSGT00390000016228.o	ENSGT00940000157461 #35	ENSGT00940000154384.h.b	ENSGT00390000004985.b
Black snub-nosed monkey	MODERN SPECIES	128	BRAP (ENSRBIG00000043626)	ACAD10 (ENSRBIG00000017864)	ALDH2 (ENSRBIG00000029956)	MAPKAPK5 (ENSRBIG00000040771)	ENSRBIG00000043828	TMEM116 (ENSRBIG00000032327)	ERP29 (ENSRBIG00000034678)	NAA25 (ENSRBIG00000041396)	TRAFD1 (ENSRBIG00000038587)	HECTD4 (ENSRBIG00000034348)	ENSRBIG00000034756	ENSRBIG00000033708	TEX9 (ENSRBIG00000029670) #19	MNS1 (ENSRBIG00000040030) #20	ZNF280D (ENSRBIG00000044744) #21	TCF12 (ENSRBIG00000028241) #22	CGNL1 (ENSRBIG00000037972) #24	MYZAP (ENSRBIG00000039531) #25	AQP9 (ENSRBIG00000044874) #28	ALDH1A2 (ENSRBIG00000032417) #26	LIPC (ENSRBIG00000044876) #29	ADAM10 (ENSRBIG00000029485) #30	MINDY2 (ENSRBIG00000041728) #31	ENSRBIG00000017789	SLTM (ENSRBIG00000029226) #32	RNF111 (ENSRBIG00000044491) #33	ENSRBIG00000034154 #34	ENSRBIG00000037017	MYO1E (ENSRBIG00000011941) #35	ENSRBIG00000038080	FAM81A (ENSRBIG00000010649)
Golden snub-nosed monkey	MODERN SPECIES	1781													TEX9 (ENSRROG00000017857) #19	MNS1 (ENSRROG00000030941) #20	ZNF280D (ENSRROG00000045252) #21	TCF12 (ENSRROG00000038864) #22	CGNL1 (ENSRROG00000038869) #24	MYZAP (ENSRROG00000042851) #25	AQP9 (ENSRROG00000036711) #28	ALDH1A2 (ENSRROG00000038404) #26	LIPC (ENSRROG00000034862) #29	ADAM10 (ENSRROG00000040154) #30	MINDY2 (ENSRROG00000029314) #31	ENSRROG00000017628	SLTM (ENSRROG00000045301) #32	RNF111 (ENSRROG00000042594) #33	ENSRROG00000031107 #34	ENSRROG00000031519	MYO1E (ENSRROG00000033829) #35	ENSRROG00000041714	FAM81A (ENSRROG00000042062)
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000155174	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36
Vervet Monkey	MODERN SPECIES	18	UNC13C (ENSCSAG00000011584)	RSL24D1 (ENSCSAG00000011613) #7	RAB27A (ENSCSAG00000011625) #8	PIGB (ENSCSAG00000011658) #10	CCPG1 (ENSCSAG00000011670) #9	PIERCE2 (ENSCSAG00000011676) #11	DNAAF4 (ENSCSAG00000011680) #12	PYGO1 (ENSCSAG00000011684) #14	PRTG (ENSCSAG00000011752) #15	NEDD4 (ENSCSAG00000011809) #16	RFX7 (ENSCSAG00000011819) #18	ENSCSAG00000019743	TEX9 (ENSCSAG00000011830) #19	MNS1 (ENSCSAG00000011864) #20	ZNF280D (ENSCSAG00000011884) #21	TCF12 (ENSCSAG00000011901) #22	CGNL1 (ENSCSAG00000011914) #24	MYZAP (ENSCSAG00000011923) #25	POLR2M (ENSCSAG00000011931) ##25	ENSCSAG00000011949 #27	ALDH1A2 (ENSCSAG00000011956) #26	AQP9 (ENSCSAG00000011963) #28	LIPC (ENSCSAG00000011971) #29	ADAM10 (ENSCSAG00000011980) #30	MINDY2 (ENSCSAG00000011994) #31	SLTM (ENSCSAG00000012004) #32	RNF111 (ENSCSAG00000012015) #33	CCNB2 (ENSCSAG00000012024) #34	LDHAL6B (ENSCSAG00000019742) #36	MYO1E (ENSCSAG00000012036) #35	FAM81A (ENSCSAG00000012043)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000155174	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000163242.e #36	ENSGT00940000157461 #35
Macaca	ANCESTRAL SPECIES	1	ENSGT00950000183105.B.b ##7	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b
Pig-tailed macaque	MODERN SPECIES	77	UNC13C (ENSMNEG00000038451)	RSL24D1 (ENSMNEG00000033431) #7	RAB27A (ENSMNEG00000008433) #8	PIGB (ENSMNEG00000015586) #10	CCPG1 (ENSMNEG00000030126) #9	PIERCE2 (ENSMNEG00000008831) #11	DNAAF4 (ENSMNEG00000032117) #12	PYGO1 (ENSMNEG00000021769) #14	PRTG (ENSMNEG00000043514) #15	NEDD4 (ENSMNEG00000032956) #16	RFX7 (ENSMNEG00000034599) #18	TEX9 (ENSMNEG00000033929) #19	MNS1 (ENSMNEG00000041140) #20	ZNF280D (ENSMNEG00000042755) #21	ENSMNEG00000038740 #23	TCF12 (ENSMNEG00000034483) #22	CGNL1 (ENSMNEG00000036681) #24	MYZAP (ENSMNEG00000036884) #25	ENSMNEG00000031595 #27	AQP9 (ENSMNEG00000041178) #28	ALDH1A2 (ENSMNEG00000035893) #26	LIPC (ENSMNEG00000034628) #29	ADAM10 (ENSMNEG00000040922) #30	MINDY2 (ENSMNEG00000042969) #31	ENSMNEG00000021451	SLTM (ENSMNEG00000025105) #32	RNF111 (ENSMNEG00000004287) #33	CCNB2 (ENSMNEG00000038718) #34	MYO1E (ENSMNEG00000002815) #35	ENSMNEG00000041217	ENSMNEG00000038663
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00940000163242.e #36	ENSGT00390000004985.b	ENSGT00940000154384.h.b
Rhesus	MODERN SPECIES	17	ENSMMUG00000055979	RSL24D1 (ENSMMUG00000020693) #7	RAB27A (ENSMMUG00000020694) #8	CCPG1 (ENSMMUG00000010798) #9	PIGB (ENSMMUG00000010797) #10	PIERCE2 (ENSMMUG00000029638) #11	DNAAF4 (ENSMMUG00000000863) #12	PYGO1 (ENSMMUG00000052322) #14	PRTG (ENSMMUG00000003653) #15	ENSMMUG00000058895	NEDD4 (ENSMMUG00000008112) #16	RFX7 (ENSMMUG00000017801) #18	TEX9 (ENSMMUG00000019484) #19	MNS1 (ENSMMUG00000019485) #20	ZNF280D (ENSMMUG00000008718) #21	TCF12 (ENSMMUG00000004091) #22	CGNL1 (ENSMMUG00000005179) #24	MYZAP (ENSMMUG00000012690) #25	ALDH1A2 (ENSMMUG00000019504) #26	AQP9 (ENSMMUG00000011225) #28	LIPC (ENSMMUG00000009566) #29	ADAM10 (ENSMMUG00000017507) #30	MINDY2 (ENSMMUG00000018109) #31	ENSMMUG00000061679	SLTM (ENSMMUG00000022200) #32	RNF111 (ENSMMUG00000013089) #33	ENSMMUG00000063524	CCNB2 (ENSMMUG00000029628) #34	MYO1E (ENSMMUG00000012933) #35	LDHAL6B (ENSMMUG00000060242) #36	FAM81A (ENSMMUG00000016390)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000040831 ##7	RAB27A (ENSMFAG00000003317) #8	PIGB (ENSMFAG00000038174) #10	CCPG1 (ENSMFAG00000031325) #9	PIERCE2 (ENSMFAG00000043286) #11	DNAAF4 (ENSMFAG00000042616) #12	ENSMFAG00000063141	PYGO1 (ENSMFAG00000033302) #14	PRTG (ENSMFAG00000038722) #15	NEDD4 (ENSMFAG00000035679) #16	ENSMFAG00000055870	RFX7 (ENSMFAG00000033176) #18	TEX9 (ENSMFAG00000037934) #19	MNS1 (ENSMFAG00000027011) #20	ZNF280D (ENSMFAG00000036502) #21	TCF12 (ENSMFAG00000031115) #22	CGNL1 (ENSMFAG00000036711) #24	MYZAP (ENSMFAG00000035568) #25	ALDH1A2 (ENSMFAG00000037327) #26	AQP9 (ENSMFAG00000039733) #28	LIPC (ENSMFAG00000034000) #29	ADAM10 (ENSMFAG00000003773) #30	MINDY2 (ENSMFAG00000033162) #31	SLTM (ENSMFAG00000033354) #32	RNF111 (ENSMFAG00000031221) #33	CCNB2 (ENSMFAG00000042779) #34	MYO1E (ENSMFAG00000032366) #35	LDHAL6B (ENSMFAG00000049071) #36	ENSMFAG00000048877	FAM81A (ENSMFAG00000044204)	ENSMFAG00000045407
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00940000155174	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000163242.e #36	ENSGT00940000157461 #35
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	17	GTF2A2 (ENSPANG00000032423)	ENSPANG00000047784	ENSPANG00000017197	ENSPANG00000032768	ENSPANG00000039068	ENSPANG00000017217 #31	ENSPANG00000017193 #32	ENSPANG00000017216 #30	ENSPANG00000017219 #29	ENSPANG00000017222 #26	ENSPANG00000037769 #25	ENSPANG00000017221 ##25	ENSPANG00000017220 #24	ENSPANG00000017265 #22	ENSPANG00000050897 #21	ENSPANG00000042664 #22	ENSPANG00000017298 #19	ENSPANG00000017263 #20	ENSPANG00000017264 #21	ENSPANG00000017296 #16	ENSPANG00000032347 #11	ENSPANG00000017291 #9	ENSPANG00000017290 #10	ENSPANG00000051200	ENSPANG00000051138	ENSPANG00000017289 #8	ENSPANG00000017320 ##7	ENSPANG00000046076	ENSPANG00000051215	ENSPANG00000017410	ENSPANG00000017409
Olive baboon	MODERN SPECIES	56																ENSPANG00000041671 #22
Olive baboon	MODERN SPECIES	17	FOXB1 (ENSPANG00000000869)	ENSPANG00000017199	GTF2A2 (ENSPANG00000032423)	ENSPANG00000047784	ENSPANG00000017197	ENSPANG00000032768	ENSPANG00000039068	ENSPANG00000017217 #31	ENSPANG00000017193 #32	ENSPANG00000017216 #30	ENSPANG00000017219 #29	ENSPANG00000017222 #26	ENSPANG00000037769 #25	ENSPANG00000017221 ##25	ENSPANG00000017220 #24	ENSPANG00000017265 #22	ENSPANG00000050897 #21	ENSPANG00000042664 #22	ENSPANG00000017298 #19	ENSPANG00000017263 #20	ENSPANG00000017264 #21	ENSPANG00000017296 #16	ENSPANG00000032347 #11	ENSPANG00000017291 #9	ENSPANG00000017290 #10	ENSPANG00000051200	ENSPANG00000051138	ENSPANG00000017289 #8	ENSPANG00000017320 ##7	ENSPANG00000046076	ENSPANG00000051215
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00940000155174	ENSGT00950000183105.B.a.a.b #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000153147.m.a.b.i.b #23	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00910000147762	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b
Drill	MODERN SPECIES	868																TCF12 (ENSMLEG00000028923) #22	ENSMLEG00000037759 #23	CGNL1 (ENSMLEG00000028818) #24	ENSMLEG00000038639	MYZAP (ENSMLEG00000005112) #25	ALDH1A2 (ENSMLEG00000036167) #26	AQP9 (ENSMLEG00000041087) #28	LIPC (ENSMLEG00000030869) #29	ADAM10 (ENSMLEG00000044106) #30	MINDY2 (ENSMLEG00000032776) #31	ENSMLEG00000028041	SLTM (ENSMLEG00000043355) #32	RNF111 (ENSMLEG00000043927) #33	CCNB2 (ENSMLEG00000032744) #34	MYO1E (ENSMLEG00000028117) #35	ENSMLEG00000014742
Sooty mangabey	MODERN SPECIES	336	UNC13C (ENSCATG00000022600)	RSL24D1 (ENSCATG00000035416) #7	RAB27A (ENSCATG00000025844) #8	PIGB (ENSCATG00000019266) #10	CCPG1 (ENSCATG00000045148) #9	PIERCE2 (ENSCATG00000034873) #11	DNAAF4 (ENSCATG00000035181) #12	PYGO1 (ENSCATG00000044728) #14	PRTG (ENSCATG00000035941) #15	NEDD4 (ENSCATG00000041989) #16	RFX7 (ENSCATG00000041703) #18	TEX9 (ENSCATG00000030510) #19	MNS1 (ENSCATG00000038230) #20	ZNF280D (ENSCATG00000012535) #21	ENSCATG00000042348 #23	TCF12 (ENSCATG00000014938) #22	CGNL1 (ENSCATG00000036319) #24	MYZAP (ENSCATG00000041308) #25	AQP9 (ENSCATG00000044019) #28	ALDH1A2 (ENSCATG00000044324) #26	LIPC (ENSCATG00000039767) #29	ADAM10 (ENSCATG00000041125) #30	MINDY2 (ENSCATG00000043333) #31	SLTM (ENSCATG00000030254) #32	RNF111 (ENSCATG00000040370) #33	CCNB2 (ENSCATG00000037096) #34	MYO1E (ENSCATG00000034350) #35	ENSCATG00000030798	ENSCATG00000043413	FAM81A (ENSCATG00000031214)	GCNT3 (ENSCATG00000040930)
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572	ENSGT00940000158531
Cebidae	ANCESTRAL SPECIES	29	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572	ENSGT00940000158531
Marmoset	MODERN SPECIES	1												TEX9 (ENSCJAG00000046992) #19	MNS1 (ENSCJAG00000046558) #20	ZNF280D (ENSCJAG00000045928) #21	ENSCJAG00000079886	TCF12 (ENSCJAG00000043084) #22	CGNL1 (ENSCJAG00000040972) #24	POLR2M (ENSCJAG00000047453) ##25	ALDH1A2 (ENSCJAG00000002282) #26	AQP9 (ENSCJAG00000085239) #28	LIPC (ENSCJAG00000080400) #29	ENSCJAG00000072076	ADAM10 (ENSCJAG00000020430) #30	MINDY2 (ENSCJAG00000020424) #31	ENSCJAG00000075320	SLTM (ENSCJAG00000020395) #32	RNF111 (ENSCJAG00000020373) #33	CCNB2 (ENSCJAG00000047995) #34	MYO1E (ENSCJAG00000001979) #35	LDHAL6B (ENSCJAG00000054541) #36	ENSCJAG00000073399
Cebidae_a	ANCESTRAL SPECIES	39		ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000163568.h	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.jb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572
Bolivian squirrel monkey	MODERN SPECIES	73	ENSSBOG00000025628	HAUS2 (ENSSBOG00000030366)	LRRC57 (ENSSBOG00000026707)	SNAP23 (ENSSBOG00000033772)	ZNF106 (ENSSBOG00000031142)	CAPN3 (ENSSBOG00000024300)	GANC (ENSSBOG00000026551)	TMEM87A (ENSSBOG00000026228)	VPS39 (ENSSBOG00000035798)	PLA2G4F (ENSSBOG00000035991)	ENSSBOG00000023141 #19	ENSSBOG00000027879	MNS1 (ENSSBOG00000022774) #20	ZNF280D (ENSSBOG00000000088) #21	ENSSBOG00000028904	TCF12 (ENSSBOG00000030977) #22	CGNL1 (ENSSBOG00000034321) #24	MYZAP (ENSSBOG00000034819) #25	POLR2M (ENSSBOG00000033956) ##25	ALDH1A2 (ENSSBOG00000033307) #26	AQP9 (ENSSBOG00000033895) #28	LIPC (ENSSBOG00000025703) #29	ADAM10 (ENSSBOG00000032599) #30	MINDY2 (ENSSBOG00000020545) #31	ENSSBOG00000036232	SLTM (ENSSBOG00000018883) #32	RNF111 (ENSSBOG00000024466) #33	ENSSBOG00000032233 #34	MYO1E (ENSSBOG00000033519) #35	FAM81A (ENSSBOG00000036216)	GTF2A2 (ENSSBOG00000029949)
Capuchin	MODERN SPECIES	501														MNS1 (ENSCCAG00000024644) #20	ZNF280D (ENSCCAG00000018684) #21	TCF12 (ENSCCAG00000032762) #22	CGNL1 (ENSCCAG00000024470) #24	MYZAP (ENSCCAG00000038018) #25	POLR2M (ENSCCAG00000034938) ##25
Mas night monkey	MODERN SPECIES	1045												TEX9 (ENSANAG00000033184) #19	MNS1 (ENSANAG00000037519) #20	ZNF280D (ENSANAG00000036601) #21	ENSANAG00000025937	TCF12 (ENSANAG00000034734) #22	CGNL1 (ENSANAG00000009430) #24	MYZAP (ENSANAG00000037003) #25	POLR2M (ENSANAG00000023616) ##25	AQP9 (ENSANAG00000025076) #28	ALDH1A2 (ENSANAG00000021292) #26	LIPC (ENSANAG00000032517) #29	ADAM10 (ENSANAG00000024000) #30	MINDY2 (ENSANAG00000028968) #31	SLTM (ENSANAG00000037031) #32	RNF111 (ENSANAG00000030291) #33	ENSANAG00000034564 #34	MYO1E (ENSANAG00000031231) #35	ENSANAG00000024145	FAM81A (ENSANAG00000030930)	ENSANAG00000033630
Tarsier	MODERN SPECIES	7191											EHD2 (ENSTSYG00000029507)	NOP53 (ENSTSYG00000036631)	SELENOW (ENSTSYG00000034854)	CRX (ENSTSYG00000003923)	ENSTSYG00000036592	TCF12 (ENSTSYG00000009264) #22	CGNL1 (ENSTSYG00000003413) #24	GALC (ENSTSYG00000003936)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Coquerels sifaka	MODERN SPECIES	729	WDR72 (ENSPCOG00000019239)	ENSPCOG00000017279	ENSPCOG00000020651 ##7	RAB27A (ENSPCOG00000015744) #8	ENSPCOG00000024499	CCPG1 (ENSPCOG00000016294) #9	PIERCE2 (ENSPCOG00000028237) #11	DNAAF4 (ENSPCOG00000021380) #12	PYGO1 (ENSPCOG00000008297) #14	PRTG (ENSPCOG00000019280) #15	NEDD4 (ENSPCOG00000028268) #16	RFX7 (ENSPCOG00000018306) #18	TEX9 (ENSPCOG00000010225) #19	MNS1 (ENSPCOG00000026806) #20	ZNF280D (ENSPCOG00000005546) #21	TCF12 (ENSPCOG00000018347) #22	CGNL1 (ENSPCOG00000027665) #24	MYZAP (ENSPCOG00000024273) #25	ENSPCOG00000024884 ##25	ALDH1A2 (ENSPCOG00000025133) #26	AQP9 (ENSPCOG00000022893) #28	LIPC (ENSPCOG00000020000) #29	ADAM10 (ENSPCOG00000022185) #30	MINDY2 (ENSPCOG00000027791) #31	SLTM (ENSPCOG00000010624) #32	RNF111 (ENSPCOG00000025013) #33	CCNB2 (ENSPCOG00000023161) #34	MYO1E (ENSPCOG00000013210) #35	FAM81A (ENSPCOG00000008691)	ENSPCOG00000017610	BNIP2 (ENSPCOG00000013836)
Greater bamboo lemur	MODERN SPECIES	1024	ENSPSMG00000014462 #27	ENSPSMG00000014481 ##7	RAB27A (ENSPSMG00000014499) #8	PIGBOS1 (ENSPSMG00000014507)	PIGB (ENSPSMG00000014528) #10	CCPG1 (ENSPSMG00000014555) #9	PIERCE2 (ENSPSMG00000014570) #11	DNAAF4 (ENSPSMG00000014584) #12	PYGO1 (ENSPSMG00000014598) #14	PRTG (ENSPSMG00000014622) #15	NEDD4 (ENSPSMG00000014751) #16	RFX7 (ENSPSMG00000014840) #18	TEX9 (ENSPSMG00000014855) #19	MNS1 (ENSPSMG00000014880) #20	ZNF280D (ENSPSMG00000015013) #21	TCF12 (ENSPSMG00000015282) #22	CGNL1 (ENSPSMG00000015615) #24	MYZAP (ENSPSMG00000015743) #25	ALDH1A2 (ENSPSMG00000015908) #26
Mouse lemur	MODERN SPECIES	22	ITGA11 (ENSMICG00000001504)	FEM1B (ENSMICG00000028605)	CLN6 (ENSMICG00000016990)	CALML4 (ENSMICG00000042372)	PIAS1 (ENSMICG00000016982)	SKOR1 (ENSMICG00000006148)	MAP2K5 (ENSMICG00000006137)	C15orf61 (ENSMICG00000046601)	ENSMICG00000045671 #15	ENSMICG00000010451	NEDD4 (ENSMICG00000037350) #16	RFX7 (ENSMICG00000000614) #18	TEX9 (ENSMICG00000028185) #19	MNS1 (ENSMICG00000002649) #20	ZNF280D (ENSMICG00000013140) #21	TCF12 (ENSMICG00000009110) #22	CGNL1 (ENSMICG00000002354) #24	MYZAP (ENSMICG00000012910) #25	POLR2M (ENSMICG00000047017) ##25	AQP9 (ENSMICG00000038252) #28	ALDH1A2 (ENSMICG00000006105) #26	ENSMICG00000038169	LIPC (ENSMICG00000005871) #29	ADAM10 (ENSMICG00000005882) #30	MINDY2 (ENSMICG00000038206) #31	SLTM (ENSMICG00000013069) #32	RNF111 (ENSMICG00000036162) #33	CCNB2 (ENSMICG00000011608) #34	MYO1E (ENSMICG00000011619) #35	FAM81A (ENSMICG00000011130)	ENSMICG00000031559
Bushbaby	MODERN SPECIES	126	WDR72 (ENSOGAG00000009391)	UNC13C (ENSOGAG00000005900)	RSL24D1 (ENSOGAG00000010400) ##7	RAB27A (ENSOGAG00000010405) #8	PIGB (ENSOGAG00000010409) #10	CCPG1 (ENSOGAG00000010414) #9	DNAAF4 (ENSOGAG00000032852) #12	PYGO1 (ENSOGAG00000002974) #14	PRTG (ENSOGAG00000005449) #15	NEDD4 (ENSOGAG00000013838) #16	RFX7 (ENSOGAG00000031795) #18	ENSOGAG00000013490	TEX9 (ENSOGAG00000001811) #19	MNS1 (ENSOGAG00000001813) #20	ZNF280D (ENSOGAG00000001816) #21	TCF12 (ENSOGAG00000006485) #22	CGNL1 (ENSOGAG00000004011) #24	MYZAP (ENSOGAG00000004013) #25	POLR2M (ENSOGAG00000025752) ##25	ALDH1A2 (ENSOGAG00000007796) #26	ENSOGAG00000031619	AQP9 (ENSOGAG00000000483) #28	ENSOGAG00000027328	LIPC (ENSOGAG00000033011) #29	ADAM10 (ENSOGAG00000004350) #30	ENSOGAG00000029975 #31	SLTM (ENSOGAG00000011297) #32	RNF111 (ENSOGAG00000009278) #33	CCNB2 (ENSOGAG00000012885) #34	MYO1E (ENSOGAG00000012887) #35	FAM81A (ENSOGAG00000012897)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Tree shrew	MODERN SPECIES	4095																TCF12 (ENSTBEG00000002192) #22
Glires	ANCESTRAL SPECIES	15	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Rodentia	ANCESTRAL SPECIES	3	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Myomorpha	ANCESTRAL SPECIES	25	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572.nd
Muroidea	ANCESTRAL SPECIES	23	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.c #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579.c #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.c #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579.c #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572.nd
Chinese hamster chok1gshd	MODERN SPECIES	284	Wdr72 (ENSCGRG00001003397)	Unc13c (ENSCGRG00001010273)	ENSCGRG00001009123 #7	Rab27a (ENSCGRG00001015778) #8	Pigb (ENSCGRG00001018673) #10	Ccpg1 (ENSCGRG00001021450) #9	Pierce2 (ENSCGRG00001022312) #11	Dnaaf4 (ENSCGRG00001024405) #12	Pygo1 (ENSCGRG00001005599) #14	Prtg (ENSCGRG00001019030) #15	Nedd4 (ENSCGRG00001024328) #16	Rfx7 (ENSCGRG00001011679) #18	Tex9 (ENSCGRG00001017918) #19	Mns1 (ENSCGRG00001024903) #20	Zfp280d (ENSCGRG00001015255) #21	Tcf12 (ENSCGRG00001017769) #22	Cgnl1 (ENSCGRG00001010637) #24	ENSCGRG00001020102	Myzap (ENSCGRG00001022094) #25	Polr2m (ENSCGRG00001022054) ##25	Aldh1a2 (ENSCGRG00001024783) #26	Aqp9 (ENSCGRG00001002590) #28	Lipc (ENSCGRG00001023377) #29	ENSCGRG00001006102 #30	Adam10 (ENSCGRG00001024542) #30	Mindy2 (ENSCGRG00001009624) #31	ENSCGRG00001005799	Sltm (ENSCGRG00001022009) #32	Rnf111 (ENSCGRG00001012805) #33	Ccnb2 (ENSCGRG00001015914) #34	Myo1e (ENSCGRG00001015678) #35
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.c #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579.c #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000030185	Rab27a (ENSPEMG00000020468) #8	ENSPEMG00000029450	Pigb (ENSPEMG00000006147) #10	Ccpg1 (ENSPEMG00000016732) #9	Pierce2 (ENSPEMG00000023319) #11	Dnaaf4 (ENSPEMG00000014726) #12	Pygo1 (ENSPEMG00000005028) #14	Prtg (ENSPEMG00000021228) #15	Nedd4 (ENSPEMG00000021099) #16	Rfx7 (ENSPEMG00000011329) #18	ENSPEMG00000028980	Tex9 (ENSPEMG00000023878) #19	Mns1 (ENSPEMG00000022047) #20	Zfp280d (ENSPEMG00000020404) #21	Tcf12 (ENSPEMG00000016404) #22	Cgnl1 (ENSPEMG00000021122) #24	Myzap (ENSPEMG00000021267) #25	ENSPEMG00000029794	Polr2m (ENSPEMG00000027979) ##25	Aldh1a2 (ENSPEMG00000017997) #26	Aqp9 (ENSPEMG00000020420) #28	Lipc (ENSPEMG00000021222) #29	Adam10 (ENSPEMG00000023786) #30	ENSPEMG00000028321	Mindy2 (ENSPEMG00000030187) #31	Sltm (ENSPEMG00000013263) #32	Rnf111 (ENSPEMG00000011827) #33	Ccnb2 (ENSPEMG00000010693) #34	Myo1e (ENSPEMG00000020628) #35	Fam81a (ENSPEMG00000020609)
Prairie vole	MODERN SPECIES	13	Unc13c (ENSMOCG00000019135)	ENSMOCG00000003818 #7	ENSMOCG00000006005	Rab27a (ENSMOCG00000021412) #8	Pigb (ENSMOCG00000002149) #10	Ccpg1 (ENSMOCG00000003089) #9	Pierce2 (ENSMOCG00000012469) #11	Dnaaf4 (ENSMOCG00000015951) #12	Pygo1 (ENSMOCG00000012375) #14	Prtg (ENSMOCG00000021980) #15	Nedd4 (ENSMOCG00000014551) #16	Rfx7 (ENSMOCG00000002168) #18	Tex9 (ENSMOCG00000006358) #19	Mns1 (ENSMOCG00000012560) #20	Zfp280d (ENSMOCG00000022695) #21	Tcf12 (ENSMOCG00000022170) #22	Cgnl1 (ENSMOCG00000011190) #24	ENSMOCG00000021256 #25	ENSMOCG00000008322	Aldh1a2 (ENSMOCG00000015827) #26	Aqp9 (ENSMOCG00000019598) #28	Lipc (ENSMOCG00000021852) #29	Adam10 (ENSMOCG00000016984) #30	Mindy2 (ENSMOCG00000007504) #31	Sltm (ENSMOCG00000012419) #32	Rnf111 (ENSMOCG00000002746) #33	Ccnb2 (ENSMOCG00000014442) #34	Myo1e (ENSMOCG00000013989) #35	Fam81a (ENSMOCG00000021727)	Gcnt3 (ENSMOCG00000000478)	Gtf2a2 (ENSMOCG00000012789)
Murinae	ANCESTRAL SPECIES	3	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Mus	ANCESTRAL SPECIES	4	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Mus_A	ANCESTRAL SPECIES	4	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601.c	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601.c	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Mouse	MODERN SPECIES	18	Gm20509 (ENSMUSG00000092310)	Khdc3 (ENSMUSG00000092622)	Rab27a (ENSMUSG00000032202) #8	Pigbos1 (ENSMUSG00000098332)	Pigb (ENSMUSG00000079469) #10	Ccpg1 (ENSMUSG00000034563) #9	Pierce2 (ENSMUSG00000086158) #11	Dnaaf4 (ENSMUSG00000092192) #12	Pygo1 (ENSMUSG00000034910) #14	Prtg (ENSMUSG00000036030) #15	Nedd4 (ENSMUSG00000032216) #16	Rfx7 (ENSMUSG00000037674) #18	Tex9 (ENSMUSG00000090626) #19	Mns1 (ENSMUSG00000032221) #20	Zfp280d (ENSMUSG00000038535) #21	Tcf12 (ENSMUSG00000032228) #22	Cgnl1 (ENSMUSG00000032232) #24	Myzap (ENSMUSG00000041361) #25	Polr2m (ENSMUSG00000032199) ##25	Aldh1a2 (ENSMUSG00000013584) #26	Aqp9 (ENSMUSG00000032204) #28	Lipc (ENSMUSG00000032207) #29	Adam10 (ENSMUSG00000054693) #30	Mindy2 (ENSMUSG00000042444) #31	Sltm (ENSMUSG00000032212) #32	Rnf111 (ENSMUSG00000032217) #33	Ccnb2 (ENSMUSG00000032218) #34	Myo1e (ENSMUSG00000032220) #35	Fam81a (ENSMUSG00000032224)	Gcnt3 (ENSMUSG00000032226)	Gtf2a2 (ENSMUSG00000033543)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000155174	ENSGT00950000183105.B.a.a #7	ENSGT00940000162601.c	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A.d.a #25	ENSGT00950000183065.A.d.b #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00520000062301	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Steppe mouse	MODERN SPECIES	3354	Unc13c (ENSMSIG00000029945)	ENSMSIG00000029963 #7	Khdc3 (ENSMSIG00000029967)	Rab27a (ENSMSIG00000029968) #8	Pigb (ENSMSIG00000029969) #10	Ccpg1 (ENSMSIG00000029989) #9	Pierce2 (ENSMSIG00000029997) #11	Dnaaf4 (ENSMSIG00000029999) #12	Pygo1 (ENSMSIG00000030007) #14	Prtg (ENSMSIG00000030011) #15	ENSMSIG00000030016 #16	Rfx7 (ENSMSIG00000030032) #18	Tex9 (ENSMSIG00000030057) #19	Mns1 (ENSMSIG00000030064) #20	Zfp280d (ENSMSIG00000030068) #21	Tcf12 (ENSMSIG00000030111) #22	ENSMSIG00000030117	ENSMSIG00000030122	Cgnl1 (ENSMSIG00000030124) #24	Myzap (ENSMSIG00000030165) #25	Polr2m (ENSMSIG00000030194) ##25	Aldh1a2 (ENSMSIG00000030205) #26	Aqp9 (ENSMSIG00000030218) #28
spretus	MODERN SPECIES	18	MGP_SPRETEiJ_G0033568	Khdc3 (MGP_SPRETEiJ_G0033567)	Rab27a (MGP_SPRETEiJ_G0033566) #8	Pigb (MGP_SPRETEiJ_G0033565) #10	Ccpg1 (MGP_SPRETEiJ_G0033564) #9	Pierce2 (MGP_SPRETEiJ_G0033563) #11	MGP_SPRETEiJ_G0033562 #12	MGP_SPRETEiJ_G0033561 #12	Pygo1 (MGP_SPRETEiJ_G0033560) #14	Prtg (MGP_SPRETEiJ_G0033559) #15	MGP_SPRETEiJ_G0033558 #16	Rfx7 (MGP_SPRETEiJ_G0033557) #18	Tex9 (MGP_SPRETEiJ_G0033556) #19	Mns1 (MGP_SPRETEiJ_G0033555) #20	Zfp280d (MGP_SPRETEiJ_G0033554) #21	Tcf12 (MGP_SPRETEiJ_G0033553) #22	Cgnl1 (MGP_SPRETEiJ_G0033552) #24	Myzap (MGP_SPRETEiJ_G0033551) #25	MGP_SPRETEiJ_G0033550 #25	MGP_SPRETEiJ_G0033549 ##25	Aldh1a2 (MGP_SPRETEiJ_G0033548) #26	Aqp9 (MGP_SPRETEiJ_G0033547) #28	Lipc (MGP_SPRETEiJ_G0033546) #29	Adam10 (MGP_SPRETEiJ_G0033545) #30	MGP_SPRETEiJ_G0033544	Mindy2 (MGP_SPRETEiJ_G0033543) #31	Sltm (MGP_SPRETEiJ_G0033542) #32	Rnf111 (MGP_SPRETEiJ_G0033541) #33	Ccnb2 (MGP_SPRETEiJ_G0033540) #34	Myo1e (MGP_SPRETEiJ_G0033539) #35	Fam81a (MGP_SPRETEiJ_G0033538)
Ryukyu mouse	MODERN SPECIES	18	MGP_CAROLIEiJ_G0032430	MGP_CAROLIEiJ_G0032429	Rab27a (MGP_CAROLIEiJ_G0032428) #8	Pigb (MGP_CAROLIEiJ_G0032427) #10	Ccpg1 (MGP_CAROLIEiJ_G0032426) #9	Pierce2 (MGP_CAROLIEiJ_G0032425) #11	MGP_CAROLIEiJ_G0032424 #12	MGP_CAROLIEiJ_G0032423 #12	Pygo1 (MGP_CAROLIEiJ_G0032422) #14	Prtg (MGP_CAROLIEiJ_G0032421) #15	MGP_CAROLIEiJ_G0032420 #16	Rfx7 (MGP_CAROLIEiJ_G0032419) #18	Tex9 (MGP_CAROLIEiJ_G0032418) #19	Mns1 (MGP_CAROLIEiJ_G0032417) #20	Zfp280d (MGP_CAROLIEiJ_G0032416) #21	Tcf12 (MGP_CAROLIEiJ_G0032415) #22	Cgnl1 (MGP_CAROLIEiJ_G0032414) #24	Myzap (MGP_CAROLIEiJ_G0032413) #25	MGP_CAROLIEiJ_G0032412 #25	Polr2m (MGP_CAROLIEiJ_G0032411) ##25	Aldh1a2 (MGP_CAROLIEiJ_G0032410) #26	Aqp9 (MGP_CAROLIEiJ_G0032409) #28	Lipc (MGP_CAROLIEiJ_G0032408) #29	Adam10 (MGP_CAROLIEiJ_G0032407) #30	MGP_CAROLIEiJ_G0032406	Mindy2 (MGP_CAROLIEiJ_G0032405) #31	Sltm (MGP_CAROLIEiJ_G0032404) #32	Rnf111 (MGP_CAROLIEiJ_G0032403) #33	Ccnb2 (MGP_CAROLIEiJ_G0032402) #34	Myo1e (MGP_CAROLIEiJ_G0032401) #35	Fam81a (MGP_CAROLIEiJ_G0032400)
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0015294	MGP_PahariEiJ_G0015293	Rab27a (MGP_PahariEiJ_G0015292) #8	Pigb (MGP_PahariEiJ_G0015291) #10	Ccpg1 (MGP_PahariEiJ_G0015290) #9	Pierce2 (MGP_PahariEiJ_G0015289) #11	MGP_PahariEiJ_G0015288 #12	MGP_PahariEiJ_G0015287 #12	Pygo1 (MGP_PahariEiJ_G0015286) #14	Prtg (MGP_PahariEiJ_G0015285) #15	MGP_PahariEiJ_G0015284 #16	MGP_PahariEiJ_G0015283 #18	Tex9 (MGP_PahariEiJ_G0015282) #19	Mns1 (MGP_PahariEiJ_G0015281) #20	Zfp280d (MGP_PahariEiJ_G0015280) #21	Tcf12 (MGP_PahariEiJ_G0015279) #22	Cgnl1 (MGP_PahariEiJ_G0015278) #24	Myzap (MGP_PahariEiJ_G0015277) #25	MGP_PahariEiJ_G0015276 #25	Polr2m (MGP_PahariEiJ_G0015275) ##25	Aldh1a2 (MGP_PahariEiJ_G0015274) #26	MGP_PahariEiJ_G0015273 #28	Lipc (MGP_PahariEiJ_G0015272) #29	Adam10 (MGP_PahariEiJ_G0015271) #30	MGP_PahariEiJ_G0015270	Mindy2 (MGP_PahariEiJ_G0015269) #31	Sltm (MGP_PahariEiJ_G0015268) #32	Rnf111 (MGP_PahariEiJ_G0015267) #33	Ccnb2 (MGP_PahariEiJ_G0015266) #34	Myo1e (MGP_PahariEiJ_G0015265) #35	Fam81a (MGP_PahariEiJ_G0015264)
Rat	MODERN SPECIES	18	Pigbos1 (ENSRNOG00000067122)	Pigb (ENSRNOG00000059622) #10	Ccpg1 (ENSRNOG00000053428) #9	Pierce2 (ENSRNOG00000052869) #11	Dnaaf4 (ENSRNOG00000056654) #12	Pygo1 (ENSRNOG00000066086) #14	Prtg (ENSRNOG00000055251) #15	ENSRNOG00000064605	AABR07070669.1 (ENSRNOG00000056409)	Nedd4 (ENSRNOG00000058898) #16	Rfx7 (ENSRNOG00000060367) #18	Tex9 (ENSRNOG00000059702) #19	Mns1 (ENSRNOG00000057867) #20	ENSRNOG00000070052	Zfp280d (ENSRNOG00000055631) #21	Tcf12 (ENSRNOG00000057754) #22	Cgnl1 (ENSRNOG00000054080) #24	Polr2m (ENSRNOG00000057676) #25	Aldh1a2 (ENSRNOG00000055049) #26	Aqp9 (ENSRNOG00000061883) #28	ENSRNOG00000070532	AABR07038881.1 (ENSRNOG00000038181)	Lipc (ENSRNOG00000060338) #29	Adam10 (ENSRNOG00000054257) #30	AABR07070609.1 (ENSRNOG00000061240)	Mindy2 (ENSRNOG00000061337) #31	Sltm (ENSRNOG00000054446) #32	Rnf111 (ENSRNOG00000060750) #33	Ccnb2 (ENSRNOG00000063216) #34	ENSRNOG00000071086	Myo1e (ENSRNOG00000061928) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	479			ENSNGAG00000023571 #7	Rab27a (ENSNGAG00000022849) #8	Pigb (ENSNGAG00000017307) #10	Ccpg1 (ENSNGAG00000020929) #9	Pierce2 (ENSNGAG00000019770) #11	Dnaaf4 (ENSNGAG00000005170) #12	Pygo1 (ENSNGAG00000013925) #14	Prtg (ENSNGAG00000016273) #15	Nedd4 (ENSNGAG00000021617) #16	Rfx7 (ENSNGAG00000021696) #18	ENSNGAG00000019601 #19	Mns1 (ENSNGAG00000001019) #20	Zfp280d (ENSNGAG00000018877) #21	Tcf12 (ENSNGAG00000019165) #22	Cgnl1 (ENSNGAG00000023531) #24	ENSNGAG00000023815 #25	Aldh1a2 (ENSNGAG00000016135) #26	Aqp9 (ENSNGAG00000022209) #28
Lesser Egyptian jerboa	MODERN SPECIES	92	ENSJJAG00000022225	Unc13c (ENSJJAG00000022823)	ENSJJAG00000010150 ##7	Rab27a (ENSJJAG00000023800) #8	Pigb (ENSJJAG00000011422) #10	Ccpg1 (ENSJJAG00000009513) #9	Pierce2 (ENSJJAG00000014904) #11	ENSJJAG00000018037 #12	Pygo1 (ENSJJAG00000012455) #14	Prtg (ENSJJAG00000011718) #15	Nedd4 (ENSJJAG00000023014) #16	Rfx7 (ENSJJAG00000004499) #18	ENSJJAG00000008835 #19	Mns1 (ENSJJAG00000006548) #20	Zfp280d (ENSJJAG00000010802) #21	Tcf12 (ENSJJAG00000014280) #22	Cgnl1 (ENSJJAG00000002516) #24	Myzap (ENSJJAG00000003683) #25	Aldh1a2 (ENSJJAG00000019176) #26	Aqp9 (ENSJJAG00000003289) #28	Lipc (ENSJJAG00000016366) #29	Adam10 (ENSJJAG00000020483) #30	Mindy2 (ENSJJAG00000015879) #31	Sltm (ENSJJAG00000006970) #32	Rnf111 (ENSJJAG00000013647) #33	Ccnb2 (ENSJJAG00000022154) #34	Myo1e (ENSJJAG00000010416) #35	Fam81a (ENSJJAG00000021870)	ENSJJAG00000016236	Bnip2 (ENSJJAG00000012193)	Foxb1 (ENSJJAG00000010310)
Kangaroo rat	MODERN SPECIES	330	Wdr72 (ENSDORG00000003029)	Unc13c (ENSDORG00000005687)	Rsl24d1 (ENSDORG00000030252) #7	Rab27a (ENSDORG00000029758) #8	Pigb (ENSDORG00000004237) #10	Ccpg1 (ENSDORG00000028418) #9	Pierce2 (ENSDORG00000029919) #11	Dnaaf4 (ENSDORG00000012067) #12	Pygo1 (ENSDORG00000028210) #14	Prtg (ENSDORG00000012398) #15	Nedd4 (ENSDORG00000008857) #16	Rfx7 (ENSDORG00000024632) #18	ENSDORG00000004539 #19	Mns1 (ENSDORG00000004541) #20	Zfp280d (ENSDORG00000010891) #21	Tcf12 (ENSDORG00000007054) #22	Cgnl1 (ENSDORG00000026162) #24	Myzap (ENSDORG00000015312) #25	ENSDORG00000026281	Aldh1a2 (ENSDORG00000011893) #26	Aqp9 (ENSDORG00000007593) #28	Adam10 (ENSDORG00000007459) #30	Mindy2 (ENSDORG00000007461) #31	Sltm (ENSDORG00000007463) #32	Rnf111 (ENSDORG00000006942) #33	Ccnb2 (ENSDORG00000006944) #34	Myo1e (ENSDORG00000008506) #35	ENSDORG00000008945	Gcnt3 (ENSDORG00000005165)	Gtf2a2 (ENSDORG00000007867)	Bnip2 (ENSDORG00000009318)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00950000183105.B.b.bb ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Marmotini	ANCESTRAL SPECIES	9	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b.bb ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Alpin marmot	MODERN SPECIES	7	ENSMMMG00000015334 ##7	RAB27A (ENSMMMG00000015328) #8	CCPG1 (ENSMMMG00000015280) #9	PIERCE2 (ENSMMMG00000015276) #11	DNAAF4 (ENSMMMG00000015251) #12	PYGO1 (ENSMMMG00000015245) #14	PRTG (ENSMMMG00000015217) #15	ENSMMMG00000015209	NEDD4 (ENSMMMG00000015178) #16	RFX7 (ENSMMMG00000015149) #18	ENSMMMG00000015145	TEX9 (ENSMMMG00000015071) #19	MNS1 (ENSMMMG00000015043) #20	ZNF280D (ENSMMMG00000014982) #21	ENSMMMG00000014979	TCF12 (ENSMMMG00000014657) #22	CGNL1 (ENSMMMG00000014543) #24	MYZAP (ENSMMMG00000014508) #25	POLR2M (ENSMMMG00000014496) ##25	ALDH1A2 (ENSMMMG00000014471) #26	AQP9 (ENSMMMG00000014447) #28	LIPC (ENSMMMG00000014432) #29	ADAM10 (ENSMMMG00000014417) #30	ENSMMMG00000014410	MINDY2 (ENSMMMG00000014393) #31	SLTM (ENSMMMG00000011563) #32	RNF111 (ENSMMMG00000011515) #33	CCNB2 (ENSMMMG00000011506) #34	MYO1E (ENSMMMG00000011477) #35	ENSMMMG00000011444	FAM81A (ENSMMMG00000011428)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000155174	ENSGT00950000183105.B.b.bb ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000006192.u	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.pb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	71	RSL24D1 (ENSSTOG00000009408) ##7	RAB27A (ENSSTOG00000025489) #8	PIGB (ENSSTOG00000008450) #10	CCPG1 (ENSSTOG00000008480) #9	PIERCE2 (ENSSTOG00000003853) #11	DNAAF4 (ENSSTOG00000021598) #12	ENSSTOG00000028579	PYGO1 (ENSSTOG00000009236) #14	PRTG (ENSSTOG00000009243) #15	NEDD4 (ENSSTOG00000005877) #16	RFX7 (ENSSTOG00000027249) #18	ENSSTOG00000029745	TEX9 (ENSSTOG00000003051) #19	MNS1 (ENSSTOG00000006850) #20	ZNF280D (ENSSTOG00000003775) #21	ENSSTOG00000001523 #22	CGNL1 (ENSSTOG00000015855) #24	MYZAP (ENSSTOG00000027285) #25	POLR2M (ENSSTOG00000026874) ##25	ALDH1A2 (ENSSTOG00000000292) #26	AQP9 (ENSSTOG00000014131) #28	LIPC (ENSSTOG00000000547) #29	ADAM10 (ENSSTOG00000000561) #30	MINDY2 (ENSSTOG00000000569) #31	ENSSTOG00000030471	SLTM (ENSSTOG00000000584) #32	RNF111 (ENSSTOG00000001267) #33	ENSSTOG00000001275 #34	MYO1E (ENSSTOG00000001282) #35	FAM81A (ENSSTOG00000005017)	GCNT3 (ENSSTOG00000004004)
Squirrel	MODERN SPECIES	895																ENSSTOG00000029885 #22
Arctic ground squirrel	MODERN SPECIES	33											ENSUPAG00010019059	TEX9 (ENSUPAG00010019067) #19	MNS1 (ENSUPAG00010019137) #20	ZNF280D (ENSUPAG00010019149) #21	ENSUPAG00010019221	TCF12 (ENSUPAG00010019230) #22	ENSUPAG00010019275	CGNL1 (ENSUPAG00010019308) #24	MYZAP (ENSUPAG00010019369) #25	POLR2M (ENSUPAG00010019395) ##25	ALDH1A2 (ENSUPAG00010019398) #26	AQP9 (ENSUPAG00010019410) #28	LIPC (ENSUPAG00010019417) #29	ADAM10 (ENSUPAG00010019425) #30	MINDY2 (ENSUPAG00010019437) #31	SLTM (ENSUPAG00010019462) #32	RNF111 (ENSUPAG00010019547) #33	ENSUPAG00010019571 #34	MYO1E (ENSUPAG00010019578) #35	FAM81A (ENSUPAG00010019613)	GCNT3 (ENSUPAG00010019625)
Eurasian red squirrel	MODERN SPECIES	11	RAB27A (ENSSVLG00005008649) #8	PIGBOS1 (ENSSVLG00005008699)	PIGB (ENSSVLG00005008710) #10	ENSSVLG00005008737 #9	PIERCE2 (ENSSVLG00005008825) #11	DNAAF4 (ENSSVLG00005008874) #12	PYGO1 (ENSSVLG00005009006) #14	PRTG (ENSSVLG00005009076) #15	NEDD4 (ENSSVLG00005009303) #16	RFX7 (ENSSVLG00005009779) #18	ENSSVLG00005009806	ENSSVLG00005009847	TEX9 (ENSSVLG00005009884) #19	MNS1 (ENSSVLG00005010076) #20	ZNF280D (ENSSVLG00005010148) #21	TCF12 (ENSSVLG00005010240) #22	CGNL1 (ENSSVLG00005010468) #24	MYZAP (ENSSVLG00005010520) #25	ENSSVLG00005010581 ##25	ALDH1A2 (ENSSVLG00005010692) #26	AQP9 (ENSSVLG00005011049) #28	LIPC (ENSSVLG00005011202) #29	ENSSVLG00005011609 #30	MINDY2 (ENSSVLG00005011765) #31	ENSSVLG00005011970	SLTM (ENSSVLG00005012027) #32	RNF111 (ENSSVLG00005012286) #33	ENSSVLG00005012381 #34	MYO1E (ENSSVLG00005012637) #35	FAM81A (ENSSVLG00005012717)	ENSSVLG00005012768
Hystricomorpha	ANCESTRAL SPECIES	36													ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	19	H2AFZ (ENSHGLG00000035407)	DNAJB14 (ENSHGLG00000000566)	LAMTOR3 (ENSHGLG00000000596)	DAPP1 (ENSHGLG00000046657)	MTTP (ENSHGLG00000002604)	ENSHGLG00000001110	C4orf17 (ENSHGLG00000001229)	ENSHGLG00000036671	ENSHGLG00000050154	ENSHGLG00000000047	ENSHGLG00000035119	ENSHGLG00000040269	ENSHGLG00000006258 #20	ENSHGLG00000010333 #21	ENSHGLG00000038848 #22	ENSHGLG00000017862 #22	CGNL1 (ENSHGLG00000014971) #24	ENSHGLG00000032585	MYZAP (ENSHGLG00000012877) #25	ENSHGLG00000011124 ##25	ALDH1A2 (ENSHGLG00000006822) #26	AQP9 (ENSHGLG00000040651) #28	LIPC (ENSHGLG00000017247) #29	ENSHGLG00000042059	ADAM10 (ENSHGLG00000008761) #30	MINDY2 (ENSHGLG00000005567) #31	ENSHGLG00000018512 #32	RNF111 (ENSHGLG00000017832) #33	ENSHGLG00000015169 #34	MYO1E (ENSHGLG00000015124) #35	ENSHGLG00000042902
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000003800	H2AFZ (ENSHGLG00000035407)	DNAJB14 (ENSHGLG00000000566)	LAMTOR3 (ENSHGLG00000000596)	DAPP1 (ENSHGLG00000046657)	MTTP (ENSHGLG00000002604)	ENSHGLG00000001110	C4orf17 (ENSHGLG00000001229)	ENSHGLG00000036671	ENSHGLG00000050154	ENSHGLG00000000047	ENSHGLG00000035119	ENSHGLG00000040269	ENSHGLG00000006258 #20	ENSHGLG00000010333 #21	ENSHGLG00000038848 #22	ENSHGLG00000017862 #22	CGNL1 (ENSHGLG00000014971) #24	ENSHGLG00000032585	MYZAP (ENSHGLG00000012877) #25	ENSHGLG00000011124 ##25	ALDH1A2 (ENSHGLG00000006822) #26	AQP9 (ENSHGLG00000040651) #28	LIPC (ENSHGLG00000017247) #29	ENSHGLG00000042059	ADAM10 (ENSHGLG00000008761) #30	MINDY2 (ENSHGLG00000005567) #31	ENSHGLG00000018512 #32	RNF111 (ENSHGLG00000017832) #33	ENSHGLG00000015169 #34	MYO1E (ENSHGLG00000015124) #35
Naked mole-rat female	MODERN SPECIES	26	DRC7 (ENSHGLG00000016692)	KATNB1 (ENSHGLG00000013445)	KIFC3 (ENSHGLG00000010429)	ENSHGLG00000010847	ENSHGLG00000016148	TEPP (ENSHGLG00000012890)	USB1 (ENSHGLG00000037991)	MMP15 (ENSHGLG00000014300)	CFAP20 (ENSHGLG00000011587)	CSNK2A2 (ENSHGLG00000014843)	CCDC113 (ENSHGLG00000016049)	PRSS54 (ENSHGLG00000012351)	ENSHGLG00000044368	ENSHGLG00000033990	ENSHGLG00000011914	ENSHGLG00000011450 #22	GINS3 (ENSHGLG00000041082)	NDRG4 (ENSHGLG00000012553)	SETD6 (ENSHGLG00000012827)	CNOT1 (ENSHGLG00000014322)	SLC38A7 (ENSHGLG00000012028)	ENSHGLG00000011393	ENSHGLG00000010708	ENSHGLG00000034274	ENSHGLG00000012608	ENSHGLG00000013653	ENSHGLG00000033892	ENSHGLG00000034841	ENSHGLG00000046044	ENSHGLG00000017133	ENSHGLG00000017123
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	RNF168 (ENSHGLG00000033078)	ENSHGLG00000048283	UBXN7 (ENSHGLG00000013332)	TM4SF19 (ENSHGLG00000013007)	ENSHGLG00000012816	PCYT1A (ENSHGLG00000046200)	ENSHGLG00000043456	SLC51A (ENSHGLG00000019258)	ZDHHC19 (ENSHGLG00000017180)	Tfrc (ENSHGLG00000017167)	TNK2 (ENSHGLG00000017162)	ENSHGLG00000047329	ENSHGLG00000025225	ENSHGLG00000017149	ENSHGLG00000019355	ENSHGLG00000035747 #22	LRCH3 (ENSHGLG00000019171)	IQCG (ENSHGLG00000018834)	RPL35A (ENSHGLG00000046416)	ENSHGLG00000014676	ENSHGLG00000014650	ENSHGLG00000041896	ENSHGLG00000014589	ATP11B (ENSHGLG00000014553)	SOX2 (ENSHGLG00000046210)	ENSHGLG00000032116	ENSHGLG00000050891	ENSHGLG00000014387	FXR1 (ENSHGLG00000018814)	ENSHGLG00000039606	CCDC39 (ENSHGLG00000016969)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000001248	ZNF287 (ENSHGLG00000001276)	ENSHGLG00000040349	ENSHGLG00000033384	CENPV (ENSHGLG00000001393)	PIGL (ENSHGLG00000039841)	NCOR1 (ENSHGLG00000000767)	ENSHGLG00000000296	TTC19 (ENSHGLG00000001575)	ENSHGLG00000001705	ENSHGLG00000048303	ENSHGLG00000001723	ENSHGLG00000038039	ENSHGLG00000041360	ENSHGLG00000047839	ENSHGLG00000042947 #22	ENSHGLG00000001950
Naked mole-rat female	MODERN SPECIES	15	SPSB3 (ENSHGLG00000001146)	NUBP2 (ENSHGLG00000004842)	IGFALS (ENSHGLG00000004496)	HAGH (ENSHGLG00000003923)	FAHD1 (ENSHGLG00000041252)	ENSHGLG00000003597	HS3ST6 (ENSHGLG00000039701)	RPL3L (ENSHGLG00000003329)	ENSHGLG00000003234	ENSHGLG00000002542	ENSHGLG00000002492	TBL3 (ENSHGLG00000002431)	NOXO1 (ENSHGLG00000044783)	GFER (ENSHGLG00000048995)	SYNGR3 (ENSHGLG00000031929)	ENSHGLG00000035150 #22	ZNF598 (ENSHGLG00000002708)	ENSHGLG00000032740	NHERF2 (ENSHGLG00000002563)	NTHL1 (ENSHGLG00000002461)	TSC2 (ENSHGLG00000002350)	PKD1 (ENSHGLG00000001913)	RAB26 (ENSHGLG00000001632)	TRAF7 (ENSHGLG00000003259)	CASKIN1 (ENSHGLG00000002907)	MLST8 (ENSHGLG00000039212)	BRICD5 (ENSHGLG00000044043)	PGP (ENSHGLG00000035898)	DNASE1L2 (ENSHGLG00000039834)	ECI1 (ENSHGLG00000019052)	ENSHGLG00000013957
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000009226	ENSHGLG00000048857	ENSHGLG00000008969	ENSHGLG00000003591	ENSHGLG00000003669	ENSHGLG00000004099	ENSHGLG00000006140	ENSHGLG00000039811	ENSHGLG00000007210	ENSHGLG00000031886	ENSHGLG00000020286	ENSHGLG00000041638	ENSHGLG00000005601	ENSHGLG00000006285	ENSHGLG00000010360	ENSHGLG00000049554 #22	ENSHGLG00000034996	ENSHGLG00000008140	ENSHGLG00000004691	SLC7A2 (ENSHGLG00000003793)	ENSHGLG00000048013	MTMR7 (ENSHGLG00000003694)	VPS37A (ENSHGLG00000006804)	CNOT7 (ENSHGLG00000006898)	ZDHHC2 (ENSHGLG00000008184)	ENSHGLG00000010341	MICU3 (ENSHGLG00000003362)	FGF20 (ENSHGLG00000004116)	ENSHGLG00000043415	ENSHGLG00000049138	MSR1 (ENSHGLG00000003185)
Naked mole-rat female	MODERN SPECIES	18	ITPK1 (ENSHGLG00000037143)	GOLGA5 (ENSHGLG00000011570)	ENSHGLG00000020869	ENSHGLG00000045989	LGMN (ENSHGLG00000048497)	ENSHGLG00000008678	ENSHGLG00000044188	SLC24A4 (ENSHGLG00000013245)	CPSF2 (ENSHGLG00000018311)	ENSHGLG00000043136	ATXN3 (ENSHGLG00000016988)	TRIP11 (ENSHGLG00000017677)	ENSHGLG00000021034	ENSHGLG00000039852	BDKRB2 (ENSHGLG00000011080)	ENSHGLG00000045135 #22	C14orf132 (ENSHGLG00000047447)	ENSHGLG00000009049	ENSHGLG00000046745	GLRX5 (ENSHGLG00000046404)	ENSHGLG00000044144	SYNE3 (ENSHGLG00000006581)	ENSHGLG00000018212	CLMN (ENSHGLG00000015763)	DICER1 (ENSHGLG00000018124)	GSC (ENSHGLG00000016799)	ENSHGLG00000016455	SERPINA3 (ENSHGLG00000016431)	SERPINA5 (ENSHGLG00000016356)	SERPINA12 (ENSHGLG00000016787)	SERPINA9 (ENSHGLG00000041856)
Naked mole-rat female	MODERN SPECIES	8	SLC2A13 (ENSHGLG00000007456)	ENSHGLG00000033676	ABCD2 (ENSHGLG00000012569)	ENSHGLG00000018960	ENSHGLG00000044300	ENSHGLG00000016118	ENSHGLG00000049034	ENSHGLG00000006477	ENSHGLG00000007513	ENSHGLG00000020628	ENSHGLG00000005157	ALG10 (ENSHGLG00000042948)	ENSHGLG00000010318	ENSHGLG00000004697	ENSHGLG00000005218	ENSHGLG00000036554 #22	PKP2 (ENSHGLG00000008295)	YARS2 (ENSHGLG00000009938)	DNM1L (ENSHGLG00000018513)	ENSHGLG00000034994	FGD4 (ENSHGLG00000010358)	ENSHGLG00000014911	ENSHGLG00000033197	ENSHGLG00000039155	ENSHGLG00000036563	ENSHGLG00000044149	ENSHGLG00000033198	ENSHGLG00000044038	ENSHGLG00000040624	ENSHGLG00000044525	ENSHGLG00000035643
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000001938	ENSHGLG00000034386	ENSHGLG00000000865	ENSHGLG00000037149	ENSHGLG00000036208	TMC1 (ENSHGLG00000015834)	ENSHGLG00000033487	ENSHGLG00000041124	GDA (ENSHGLG00000012950)	ENSHGLG00000013674	ENSHGLG00000044859	ENSHGLG00000015860	ABHD17B (ENSHGLG00000032723)	TMEM2 (ENSHGLG00000013965)	ENSHGLG00000003100	ENSHGLG00000034795 #22	TRPM3 (ENSHGLG00000009801)	KLF9 (ENSHGLG00000048078)	SMC5 (ENSHGLG00000016184)	ENSHGLG00000015921	MAMDC2 (ENSHGLG00000016706)	CFAP95 (ENSHGLG00000008365)	PTAR1 (ENSHGLG00000011396)	ENSHGLG00000035765	APBA1 (ENSHGLG00000007815)	ENSHGLG00000021076	ENTREP1 (ENSHGLG00000014108)	ENSHGLG00000031959	TJP2 (ENSHGLG00000015590)	FXN (ENSHGLG00000013859)	PIP5K1B (ENSHGLG00000015519)
Naked mole-rat female	MODERN SPECIES	23	SUCLG1 (ENSHGLG00000047475)	ENSHGLG00000020983	ENSHGLG00000016878	ENSHGLG00000016889	ENSHGLG00000050728	ENSHGLG00000021375	ENSHGLG00000045424	ENSHGLG00000005143	ENSHGLG00000007074	ENSHGLG00000007734	ENSHGLG00000008059	ENSHGLG00000034192	ENSHGLG00000047665	ENSHGLG00000008716	ENSHGLG00000034955	ENSHGLG00000038719 #22	ENSHGLG00000034056	ENSHGLG00000015346	ENSHGLG00000015398	GCFC2 (ENSHGLG00000008801)	MRPL19 (ENSHGLG00000042011)	EVA1A (ENSHGLG00000040877)	TACR1 (ENSHGLG00000045416)	POLE4 (ENSHGLG00000047239)	HK2 (ENSHGLG00000005907)	ENSHGLG00000035045	SEMA4F (ENSHGLG00000009042)	M1AP (ENSHGLG00000004860)	DOK1 (ENSHGLG00000005074)	LOXL3 (ENSHGLG00000006170)	HTRA2 (ENSHGLG00000009744)
Naked mole-rat female	MODERN SPECIES	27	SOX2 (ENSHGLG00000046210)	ENSHGLG00000032116	ENSHGLG00000050891	ENSHGLG00000014387	FXR1 (ENSHGLG00000018814)	ENSHGLG00000039606	CCDC39 (ENSHGLG00000016969)	TTC14 (ENSHGLG00000016959)	ENSHGLG00000016952	PEX5L (ENSHGLG00000016946)	USP13 (ENSHGLG00000014472)	NDUFB5 (ENSHGLG00000014377)	MRPL47 (ENSHGLG00000033799)	ACTL6A (ENSHGLG00000013350)	GNB4 (ENSHGLG00000012880)	ENSHGLG00000044219 #22	MFN1 (ENSHGLG00000012515)	ZNF639 (ENSHGLG00000050776)	KCNMB3 (ENSHGLG00000012132)	ENSHGLG00000011894	ZMAT3 (ENSHGLG00000011523)	ENSHGLG00000011277	KCNMB2 (ENSHGLG00000041894)	ENSHGLG00000016930	ENSHGLG00000038549	ENSHGLG00000019115	ENSHGLG00000050422	TBL1XR1 (ENSHGLG00000044077)	ENSHGLG00000033259	ENSHGLG00000050637	NAALADL2 (ENSHGLG00000013839)
Hystricomorpha_a	ANCESTRAL SPECIES	38													ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Guinea pig	MODERN SPECIES	155							MTFMT (ENSCPOG00000012242)	SPG21 (ENSCPOG00000012234)	GP9 (ENSCPOG00000024986)	EFCC1 (ENSCPOG00000021193)	ENSCPOG00000019560	ENSCPOG00000031208	TEX9 (ENSCPOG00000007244) #19	MNS1 (ENSCPOG00000009030) #20	ZNF280D (ENSCPOG00000014273) #21	TCF12 (ENSCPOG00000009153) #22	CGNL1 (ENSCPOG00000026550) #24	MYZAP (ENSCPOG00000009159) #25	POLR2M (ENSCPOG00000039114) ##25	ALDH1A2 (ENSCPOG00000003149) #26	AQP9 (ENSCPOG00000036908) #28	LIPC (ENSCPOG00000003790) #29	ADAM10 (ENSCPOG00000010516) #30
Hystricomorpha_b	ANCESTRAL SPECIES	35													ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572.dd
Long-tailed chinchilla	MODERN SPECIES	157												TEX9 (ENSCLAG00000010721) #19	MNS1 (ENSCLAG00000009111) #20	ENSCLAG00000008975	ZNF280D (ENSCLAG00000010749) #21	TCF12 (ENSCLAG00000009457) #22	CGNL1 (ENSCLAG00000007046) #24	MYZAP (ENSCLAG00000006426) #25	POLR2M (ENSCLAG00000006251) ##25	ALDH1A2 (ENSCLAG00000008024) #26	AQP9 (ENSCLAG00000007276) #28	LIPC (ENSCLAG00000009019) #29	ADAM10 (ENSCLAG00000008259) #30	MINDY2 (ENSCLAG00000007672) #31	SLTM (ENSCLAG00000007160) #32	RNF111 (ENSCLAG00000008225) #33	CCNB2 (ENSCLAG00000008353) #34	MYO1E (ENSCLAG00000008802) #35	FAM81A (ENSCLAG00000008454)	GCNT3 (ENSCLAG00000017684)	ENSCLAG00000007616
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	67										ENSODEG00000017399 #19	MNS1 (ENSODEG00000017130) #20	ENSODEG00000020516	ZNF280D (ENSODEG00000017105) #21	ENSODEG00000017238	ENSODEG00000017113	ENSODEG00000017233 #22	ENSODEG00000017285 #22	CGNL1 (ENSODEG00000017187) #24	ENSODEG00000020457	MYZAP (ENSODEG00000017200) #25	ALDH1A2 (ENSODEG00000017335) #26	AQP9 (ENSODEG00000016950) #28	LIPC (ENSODEG00000017170) #29	ADAM10 (ENSODEG00000017007) #30	MINDY2 (ENSODEG00000017214) #31	SLTM (ENSODEG00000017077) #32	RNF111 (ENSODEG00000017237) #33	CCNB2 (ENSODEG00000016886) #34	ENSODEG00000017886	MYO1E (ENSODEG00000016979) #35	ENSODEG00000016827
Degu	MODERN SPECIES	67									ENSODEG00000017399 #19	MNS1 (ENSODEG00000017130) #20	ENSODEG00000020516	ZNF280D (ENSODEG00000017105) #21	ENSODEG00000017238	ENSODEG00000017113	ENSODEG00000017233 #22	ENSODEG00000017285 #22	CGNL1 (ENSODEG00000017187) #24	ENSODEG00000020457	MYZAP (ENSODEG00000017200) #25	ALDH1A2 (ENSODEG00000017335) #26	AQP9 (ENSODEG00000016950) #28	LIPC (ENSODEG00000017170) #29	ADAM10 (ENSODEG00000017007) #30	MINDY2 (ENSODEG00000017214) #31	SLTM (ENSODEG00000017077) #32	RNF111 (ENSODEG00000017237) #33	CCNB2 (ENSODEG00000016886) #34	ENSODEG00000017886	MYO1E (ENSODEG00000016979) #35	ENSODEG00000016827	ENSODEG00000017154
Degu	MODERN SPECIES	632																ENSODEG00000000026 #22
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000155047 #22
Pika	MODERN SPECIES	1663																ENSOPRG00000000336 #22
Rabbit	MODERN SPECIES	8	PIGBOS1 (ENSOCUG00000034355)	PIGB (ENSOCUG00000007457) #10	CCPG1 (ENSOCUG00000007468) #9	PIERCE2 (ENSOCUG00000039060) #11	DNAAF4 (ENSOCUG00000025031) #12	PYGO1 (ENSOCUG00000011752) #14	ENSOCUG00000027152 #15	NEDD4 (ENSOCUG00000006856) #16	RFX7 (ENSOCUG00000013678) #18	ENSOCUG00000033842	TEX9 (ENSOCUG00000012275) #19	MNS1 (ENSOCUG00000012282) #20	ZNF280D (ENSOCUG00000015094) #21	ENSOCUG00000025662	ENSOCUG00000023894	TCF12 (ENSOCUG00000017812) #22	ENSOCUG00000036890	CGNL1 (ENSOCUG00000003637) #24	MYZAP (ENSOCUG00000002296) #25	POLR2M (ENSOCUG00000036974) ##25	ALDH1A2 (ENSOCUG00000016942) #26	AQP9 (ENSOCUG00000009796) #28	LIPC (ENSOCUG00000001647) #29	ADAM10 (ENSOCUG00000016023) #30	ENSOCUG00000006171 #31	SLTM (ENSOCUG00000003327) #32	RNF111 (ENSOCUG00000003338) #33	CCNB2 (ENSOCUG00000001652) #34	MYO1E (ENSOCUG00000015835) #35	FAM81A (ENSOCUG00000005790)	GCNT3 (ENSOCUG00000006282)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155047 #22
Common shrew	MODERN SPECIES	253																TCF12 (ENSSARG00000013798) #22
Hedgehog	MODERN SPECIES	3780																TCF12 (ENSEEUG00000002182) #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Suina	ANCESTRAL SPECIES	12	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Pig	MODERN SPECIES		PYGO1 (ENSSSCG00000004607) #14	ENSSSCG00000059778	PRTG (ENSSSCG00000035798) #15	NEDD4 (ENSSSCG00000037499) #16	ENSSSCG00000049979	RFX7 (ENSSSCG00000004603) #18	TEX9 (ENSSSCG00000004602) #19	MNS1 (ENSSSCG00000004601) #20	ENSSSCG00000058998	ZNF280D (ENSSSCG00000026960) #21	ENSSSCG00000052145	ENSSSCG00000043390	ENSSSCG00000041181	ENSSSCG00000053651	ENSSSCG00000058191	TCF12 (ENSSSCG00000004600) #22	CGNL1 (ENSSSCG00000035038) #24	MYZAP (ENSSSCG00000004598) #25	POLR2M (ENSSSCG00000030605) ##25	ALDH1A2 (ENSSSCG00000025578) #26	ENSSSCG00000046774	AQP9 (ENSSSCG00000004597) #28	ENSSSCG00000055556	LIPC (ENSSSCG00000004596) #29	ENSSSCG00000024660	ADAM10 (ENSSSCG00000004595) #30	MINDY2 (ENSSSCG00000024131) #31	ENSSSCG00000034769	SLTM (ENSSSCG00000004592) #32	RNF111 (ENSSSCG00000004589) #33	CCNB2 (ENSSSCG00000004588) #34
Chacoan peccary	MODERN SPECIES	162	RSL24D1 (ENSCWAG00000019134) ##7	RAB27A (ENSCWAG00000019162) #8	PIGBOS1 (ENSCWAG00000019184)	PIGB (ENSCWAG00000019191) #10	CCPG1 (ENSCWAG00000019209) #9	PIERCE2 (ENSCWAG00000019245) #11	DNAAF4 (ENSCWAG00000019267) #12	PYGO1 (ENSCWAG00000019372) #14	PRTG (ENSCWAG00000019422) #15	NEDD4 (ENSCWAG00000019581) #16	RFX7 (ENSCWAG00000019910) #18	TEX9 (ENSCWAG00000019953) #19	MNS1 (ENSCWAG00000020054) #20	ENSCWAG00000020068	ZNF280D (ENSCWAG00000020082) #21	TCF12 (ENSCWAG00000020173) #22	CGNL1 (ENSCWAG00000020310) #24
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Camelidae	ANCESTRAL SPECIES	23	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Alpaca	MODERN SPECIES	670															ZNF280D (ENSVPAG00000006543) #21	TCF12 (ENSVPAG00000006545) #22	ENSVPAG00000006546 #24
Arabian camel	MODERN SPECIES	32	UNC13C (ENSCDRG00005016110)	RSL24D1 (ENSCDRG00005016070) ##7	RAB27A (ENSCDRG00005016015) #8	PIGBOS1 (ENSCDRG00005016000)	PIGB (ENSCDRG00005015836) #10	CCPG1 (ENSCDRG00005015670) #9	PIERCE2 (ENSCDRG00005015626) #11	DNAAF4 (ENSCDRG00005015559) #12	PYGO1 (ENSCDRG00005015513) #14	PRTG (ENSCDRG00005015350) #15	NEDD4 (ENSCDRG00005014473) #16	RFX7 (ENSCDRG00005014343) #18	TEX9 (ENSCDRG00005014221) #19	MNS1 (ENSCDRG00005014157) #20	ZNF280D (ENSCDRG00005013979) #21	TCF12 (ENSCDRG00005013440) #22	CGNL1 (ENSCDRG00005013208) #24	MYZAP (ENSCDRG00005012933) #25	POLR2M (ENSCDRG00005012854) ##25	AQP9 (ENSCDRG00005012783) #28	ALDH1A2 (ENSCDRG00005012276) #26	LIPC (ENSCDRG00005012154) #29	ADAM10 (ENSCDRG00005011988) #30	ENSCDRG00005011957	MINDY2 (ENSCDRG00005011843) #31	SLTM (ENSCDRG00005011603) #32	RNF111 (ENSCDRG00005011330) #33	CCNB2 (ENSCDRG00005011168) #34	MYO1E (ENSCDRG00005010981) #35	FAM81A (ENSCDRG00005010891)	GCNT3 (ENSCDRG00005010851)
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00960000192699	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572.fb
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00500000044920.h	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00500000044920.h	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Beluga whale	MODERN SPECIES	20	WDR72 (ENSDLEG00000010477)	UNC13C (ENSDLEG00000010608)	RSL24D1 (ENSDLEG00000010837) ##7	RAB27A (ENSDLEG00000010854) #8	CCPG1 (ENSDLEG00000010886) #9	PIGB (ENSDLEG00000010992) #10	PIERCE2 (ENSDLEG00000011036) #11	DNAAF4 (ENSDLEG00000011045) #12	PYGO1 (ENSDLEG00000011055) #14	PRTG (ENSDLEG00000011067) #15	NEDD4 (ENSDLEG00000011206) #16	RFX7 (ENSDLEG00000011344) #18	TEX9 (ENSDLEG00000011367) #19	MNS1 (ENSDLEG00000011429) #20	ZNF280D (ENSDLEG00000011456) #21	TCF12 (ENSDLEG00000011499) #22	CGNL1 (ENSDLEG00000011635) #24	MYZAP (ENSDLEG00000011677) #25	POLR2M (ENSDLEG00000011717) ##25	ALDH1A2 (ENSDLEG00000011724) #26	AQP9 (ENSDLEG00000011745) #28	LIPC (ENSDLEG00000011760) #29	ADAM10 (ENSDLEG00000011799) #30	MINDY2 (ENSDLEG00000011823) #31	ENSDLEG00000011841	SLTM (ENSDLEG00000011855) #32	RNF111 (ENSDLEG00000011891) #33	ENSDLEG00000011930	CCNB2 (ENSDLEG00000011945) #34	MYO1E (ENSDLEG00000011982) #35	FAM81A (ENSDLEG00000012090)
Narwhal	MODERN SPECIES	308	UNC13C (ENSMMNG00015007908)	RSL24D1 (ENSMMNG00015008035) ##7	RAB27A (ENSMMNG00015008060) #8	PIGBOS1 (ENSMMNG00015008080)	PIGB (ENSMMNG00015008100) #10	CCPG1 (ENSMMNG00015008124) #9	PIERCE2 (ENSMMNG00015008158) #11	DNAAF4 (ENSMMNG00015008183) #12	PYGO1 (ENSMMNG00015008220) #14	PRTG (ENSMMNG00015008239) #15	NEDD4 (ENSMMNG00015008335) #16	RFX7 (ENSMMNG00015008450) #18	TEX9 (ENSMMNG00015008497) #19	MNS1 (ENSMMNG00015008552) #20	ZNF280D (ENSMMNG00015008588) #21	TCF12 (ENSMMNG00015008652) #22	CGNL1 (ENSMMNG00015008737) #24	MYZAP (ENSMMNG00015008782) #25	POLR2M (ENSMMNG00015008834) ##25	ALDH1A2 (ENSMMNG00015008867) #26	AQP9 (ENSMMNG00015008896) #28	LIPC (ENSMMNG00015008926) #29	ADAM10 (ENSMMNG00015008952) #30	MINDY2 (ENSMMNG00015008982) #31	SLTM (ENSMMNG00015009010) #32	RNF111 (ENSMMNG00015009033) #33	ENSMMNG00015009045	CCNB2 (ENSMMNG00015009062) #34	MYO1E (ENSMMNG00015009083) #35	FAM81A (ENSMMNG00015009117)	GCNT3 (ENSMMNG00015009131)
Vaquita	MODERN SPECIES	11	UNC13C (ENSPSNG00000003141)	RSL24D1 (ENSPSNG00000003069) ##7	RAB27A (ENSPSNG00000003049) #8	PIGB (ENSPSNG00000003010) #10	CCPG1 (ENSPSNG00000002957) #9	PIERCE2 (ENSPSNG00000002922) #11	DNAAF4 (ENSPSNG00000002904) #12	PYGO1 (ENSPSNG00000002880) #14	PRTG (ENSPSNG00000002846) #15	NEDD4 (ENSPSNG00000002691) #16	RFX7 (ENSPSNG00000002608) #18	ENSPSNG00000002570	TEX9 (ENSPSNG00000002550) #19	MNS1 (ENSPSNG00000002522) #20	ZNF280D (ENSPSNG00000002413) #21	TCF12 (ENSPSNG00000002365) #22	CGNL1 (ENSPSNG00000002273) #24	MYZAP (ENSPSNG00000002163) #25	POLR2M (ENSPSNG00000002108) ##25	ALDH1A2 (ENSPSNG00000002037) #26	AQP9 (ENSPSNG00000001984) #28	LIPC (ENSPSNG00000001932) #29	ADAM10 (ENSPSNG00000001884) #30	MINDY2 (ENSPSNG00000001818) #31	SLTM (ENSPSNG00000001794) #32	RNF111 (ENSPSNG00000001766) #33	ENSPSNG00000001751	CCNB2 (ENSPSNG00000001729) #34	MYO1E (ENSPSNG00000001661) #35	FAM81A (ENSPSNG00000001585)	GCNT3 (ENSPSNG00000001564)
Dolphin	MODERN SPECIES	659																TCF12 (ENSTTRG00000010817) #22	CGNL1 (ENSTTRG00000010818) #24	MYZAP (ENSTTRG00000010819) #25
Sperm whale	MODERN SPECIES	2	PIGB (ENSPCTG00005003912) #10	CCPG1 (ENSPCTG00005003939) #9	ENSPCTG00005003967 #11	DNAAF4 (ENSPCTG00005003984) #12	PYGO1 (ENSPCTG00005004001) #14	PRTG (ENSPCTG00005004024) #15	ENSPCTG00005004050	NEDD4 (ENSPCTG00005004131) #16	RFX7 (ENSPCTG00005004716) #18	ENSPCTG00005004742	ENSPCTG00005004746	TEX9 (ENSPCTG00005004786) #19	MNS1 (ENSPCTG00005004828) #20	ZNF280D (ENSPCTG00005004865) #21	ENSPCTG00005004946	TCF12 (ENSPCTG00005005020) #22	CGNL1 (ENSPCTG00005005300) #24	MYZAP (ENSPCTG00005005348) #25	POLR2M (ENSPCTG00005005433) ##25	ALDH1A2 (ENSPCTG00005005493) #26	AQP9 (ENSPCTG00005005660) #28	LIPC (ENSPCTG00005005721) #29	ADAM10 (ENSPCTG00005005786) #30	MINDY2 (ENSPCTG00005006000) #31	ENSPCTG00005006055	SLTM (ENSPCTG00005006094) #32	RNF111 (ENSPCTG00005006164) #33	CCNB2 (ENSPCTG00005008748) #34	MYO1E (ENSPCTG00005008840) #35	FAM81A (ENSPCTG00005009006)	GCNT3 (ENSPCTG00005009050)
Blue whale	MODERN SPECIES	11	CCPG1 (ENSBMSG00010003354) #9	PIERCE2 (ENSBMSG00010003343) #11	DNAAF4 (ENSBMSG00010003330) #12	PYGO1 (ENSBMSG00010003306) #14	ENSBMSG00010003291	PRTG (ENSBMSG00010003236) #15	ENSBMSG00010003217	NEDD4 (ENSBMSG00010003007) #16	RFX7 (ENSBMSG00010002951) #18	ENSBMSG00010002935	TEX9 (ENSBMSG00010002805) #19	MNS1 (ENSBMSG00010002770) #20	ENSBMSG00010002765	ENSBMSG00010002756 #21	ENSBMSG00010002738	TCF12 (ENSBMSG00010002642) #22	CGNL1 (ENSBMSG00010002567) #24	MYZAP (ENSBMSG00010002466) #25	ENSBMSG00010002414 ##25	ALDH1A2 (ENSBMSG00010002264) #26	AQP9 (ENSBMSG00010002216) #28	LIPC (ENSBMSG00010002097) #29	ADAM10 (ENSBMSG00010002053) #30	MINDY2 (ENSBMSG00010002021) #31	SLTM (ENSBMSG00010001996) #32	RNF111 (ENSBMSG00010001868) #33	CCNB2 (ENSBMSG00010001737) #34	MYO1E (ENSBMSG00010001489) #35	FAM81A (ENSBMSG00010001446)	ENSBMSG00010001413	BNIP2 (ENSBMSG00010001392)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Yarkand deer	MODERN SPECIES	3	RAB27A (ENSCHYG00000021962) #8	PIGB (ENSCHYG00000021828) #10	CCPG1 (ENSCHYG00000021635) #9	PIERCE2 (ENSCHYG00000021599) #11	DNAAF4 (ENSCHYG00000021358) #12	PYGO1 (ENSCHYG00000021276) #14	PRTG (ENSCHYG00000021091) #15	ENSCHYG00000021021	NEDD4 (ENSCHYG00000018840) #16	ENSCHYG00000018700	RFX7 (ENSCHYG00000018617) #18	TEX9 (ENSCHYG00000018258) #19	MNS1 (ENSCHYG00000018147) #20	ZNF280D (ENSCHYG00000017379) #21	ENSCHYG00000017295	TCF12 (ENSCHYG00000016611) #22	ENSCHYG00000016552	ENSCHYG00000016531	CGNL1 (ENSCHYG00000016114) #24	MYZAP (ENSCHYG00000015583) #25	ALDH1A2 (ENSCHYG00000014768) #26	ENSCHYG00000014708	AQP9 (ENSCHYG00000014576) #28	LIPC (ENSCHYG00000014377) #29	ADAM10 (ENSCHYG00000014132) #30	MINDY2 (ENSCHYG00000013931) #31	SLTM (ENSCHYG00000013792) #32	RNF111 (ENSCHYG00000013657) #33	ENSCHYG00000013470 #34	MYO1E (ENSCHYG00000013289) #35	FAM81A (ENSCHYG00000013193)
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Siberian musk deer	MODERN SPECIES	257	RSL24D1 (ENSMMSG00000006658) ##7	RAB27A (ENSMMSG00000006628) #8	PIGBOS1 (ENSMMSG00000006610)	PIGB (ENSMMSG00000006576) #10	CCPG1 (ENSMMSG00000006480) #9	PIERCE2 (ENSMMSG00000006447) #11	DNAAF4 (ENSMMSG00000006406) #12	PYGO1 (ENSMMSG00000006373) #14	PRTG (ENSMMSG00000006260) #15	NEDD4 (ENSMMSG00000006090) #16	RFX7 (ENSMMSG00000006029) #18	ENSMMSG00000006005	TEX9 (ENSMMSG00000005857) #19	MNS1 (ENSMMSG00000020858) #20	ZNF280D (ENSMMSG00000020750) #21	TCF12 (ENSMMSG00000020389) #22	CGNL1 (ENSMMSG00000020305) #24	MYZAP (ENSMMSG00000020205) #25	POLR2M (ENSMMSG00000020150) ##25	ALDH1A2 (ENSMMSG00000019982) #26	AQP9 (ENSMMSG00000019948) #28	LIPC (ENSMMSG00000019830) #29	ADAM10 (ENSMMSG00000019713) #30	ENSMMSG00000019695	MINDY2 (ENSMMSG00000019661) #31	SLTM (ENSMMSG00000019627) #32	ENSMMSG00000019602	RNF111 (ENSMMSG00000019565) #33	ENSMMSG00000019489 #34	ENSMMSG00000019472	MYO1E (ENSMMSG00000019415) #35
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Goat	MODERN SPECIES	1	WDR72 (ENSCHIG00000010513)	ENSCHIG00000013181	RSL24D1 (ENSCHIG00000016405) ##7	RAB27A (ENSCHIG00000007718) #8	PIGB (ENSCHIG00000018932) #10	CCPG1 (ENSCHIG00000024802) #9	PIERCE2 (ENSCHIG00000019137) #11	DNAAF4 (ENSCHIG00000016814) #12	PYGO1 (ENSCHIG00000024969) #14	PRTG (ENSCHIG00000014891) #15	NEDD4 (ENSCHIG00000017824) #16	RFX7 (ENSCHIG00000026500) #18	TEX9 (ENSCHIG00000016001) #19	MNS1 (ENSCHIG00000011779) #20	ZNF280D (ENSCHIG00000021583) #21	TCF12 (ENSCHIG00000008569) #22	CGNL1 (ENSCHIG00000012395) #24	MYZAP (ENSCHIG00000010101) #25	POLR2M (ENSCHIG00000000701) ##25	ALDH1A2 (ENSCHIG00000025960) #26	AQP9 (ENSCHIG00000018286) #28	LIPC (ENSCHIG00000026829) #29	ADAM10 (ENSCHIG00000007232) #30	ENSCHIG00000004124	MINDY2 (ENSCHIG00000008343) #31	SLTM (ENSCHIG00000008780) #32	RNF111 (ENSCHIG00000023723) #33	CCNB2 (ENSCHIG00000014721) #34	MYO1E (ENSCHIG00000013110) #35	FAM81A (ENSCHIG00000015814)	GCNT3 (ENSCHIG00000009946)
Rambouillet Sheep	MODERN SPECIES	23	RAB27A (ENSOARG00020024569) #8	PIGBOS1 (ENSOARG00020024563)	PIGB (ENSOARG00020024539) #10	CCPG1 (ENSOARG00020024398) #9	C15orf65 (ENSOARG00020024376) #11	ENSOARG00020024348	DNAAF4 (ENSOARG00020024256) #12	PYGO1 (ENSOARG00020024222) #14	PRTG (ENSOARG00020024103) #15	NEDD4 (ENSOARG00020023422) #16	RFX7 (ENSOARG00020023368) #18	TEX9 (ENSOARG00020023244) #19	ENSOARG00020023225	MNS1 (ENSOARG00020023210) #20	ZNF280D (ENSOARG00020022968) #21	TCF12 (ENSOARG00020022679) #22	ENSOARG00020022647	CGNL1 (ENSOARG00020022386) #24	MYZAP (ENSOARG00020022259) #25	POLR2M (ENSOARG00020022191) ##25	ALDH1A2 (ENSOARG00020021892) #26	AQP9 (ENSOARG00020021823) #28	ENSOARG00020021759	LIPC (ENSOARG00020021564) #29	ADAM10 (ENSOARG00020021312) #30	MINDY2 (ENSOARG00020021211) #31	SLTM (ENSOARG00020021163) #32	RNF111 (ENSOARG00020021012) #33	CCNB2 (ENSOARG00020020879) #34	MYO1E (ENSOARG00020020182) #35	FAM81A (ENSOARG00020020134)
Bovinae	ANCESTRAL SPECIES	11	ENSGT00950000183105.B.b ##7	ENSGT00940000156218.a #8	ENSGT00940000156218.b #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000015813.g.d	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
American bison	MODERN SPECIES	3000	RSL24D1 (ENSBBBG00000000926) ##7	ENSBBBG00000000933 #8	PIGBOS1 (ENSBBBG00000000972)	PIGB (ENSBBBG00000000978) #10	CCPG1 (ENSBBBG00000001012) #9	PIERCE2 (ENSBBBG00000001102) #11	DNAAF4 (ENSBBBG00000001110) #12	PYGO1 (ENSBBBG00000001176) #14	PRTG (ENSBBBG00000001204) #15	NEDD4 (ENSBBBG00000014895) #16	RFX7 (ENSBBBG00000014720) #18	TEX9 (ENSBBBG00000014685) #19	ENSBBBG00000014604	MNS1 (ENSBBBG00000014599) #20	ZNF280D (ENSBBBG00000014586) #21	TCF12 (ENSBBBG00000009128) #22	CGNL1 (ENSBBBG00000014380) #24	MYZAP (ENSBBBG00000014366) #25	POLR2M (ENSBBBG00000014311) ##25	ALDH1A2 (ENSBBBG00000014299) #26	AQP9 (ENSBBBG00000014231) #28	LIPC (ENSBBBG00000002888) #29	ADAM10 (ENSBBBG00000014183) #30	ENSBBBG00000014172	MINDY2 (ENSBBBG00000014166) #31	SLTM (ENSBBBG00000003203) #32	RNF111 (ENSBBBG00000003193) #33	CCNB2 (ENSBBBG00000014120) #34	MYO1E (ENSBBBG00000014100) #35	FAM81A (ENSBBBG00000003145)	GCNT3 (ENSBBBG00000003138)
Bos	ANCESTRAL SPECIES	13	ENSGT00950000183105.B.b ##7	ENSGT00940000156218.a #8	ENSGT00940000156218.b #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000015813.g.d	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b
Bos_a	ANCESTRAL SPECIES	53				ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000015813.g.d	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b
Wild yak	MODERN SPECIES	1802		RSL24D1 (ENSBMUG00000009011) ##7	ENSBMUG00000008998 #8	PIGBOS1 (ENSBMUG00000008967)	PIGB (ENSBMUG00000008959) #10	CCPG1 (ENSBMUG00000008930) #9	PIERCE2 (ENSBMUG00000008876) #11	DNAAF4 (ENSBMUG00000008868) #12	PYGO1 (ENSBMUG00000008849) #14	PRTG (ENSBMUG00000008833) #15	NEDD4 (ENSBMUG00000008777) #16	RFX7 (ENSBMUG00000008646) #18	TEX9 (ENSBMUG00000008599) #19	MNS1 (ENSBMUG00000008552) #20	ZNF280D (ENSBMUG00000008538) #21	TCF12 (ENSBMUG00000008445) #22	CGNL1 (ENSBMUG00000008354) #24	MYZAP (ENSBMUG00000008320) #25	POLR2M (ENSBMUG00000008259) ##25
Domestic yak	MODERN SPECIES	2	ENSBGRG00000016711 #8	PIGBOS1 (ENSBGRG00000016687)	PIGB (ENSBGRG00000016535) #10	CCPG1 (ENSBGRG00000016245) #9	PIERCE2 (ENSBGRG00000016198) #11	DNAAF4 (ENSBGRG00000015774) #12	PYGO1 (ENSBGRG00000015626) #14	PRTG (ENSBGRG00000015376) #15	NEDD4 (ENSBGRG00000014374) #16	RFX7 (ENSBGRG00000014266) #18	ENSBGRG00000014232	TEX9 (ENSBGRG00000013941) #19	MNS1 (ENSBGRG00000013787) #20	ENSBGRG00000013754	ZNF280D (ENSBGRG00000013385) #21	TCF12 (ENSBGRG00000012739) #22	CGNL1 (ENSBGRG00000012540) #24	MYZAP (ENSBGRG00000011974) #25	POLR2M (ENSBGRG00000011811) ##25	ALDH1A2 (ENSBGRG00000011324) #26	AQP9 (ENSBGRG00000011032) #28	LIPC (ENSBGRG00000010472) #29	ADAM10 (ENSBGRG00000010308) #30	ENSBGRG00000010264	MINDY2 (ENSBGRG00000010110) #31	SLTM (ENSBGRG00000009817) #32	ENSBGRG00000009782	ENSBGRG00000009765	ENSBGRG00000009750	RNF111 (ENSBGRG00000009659) #33	ENSBGRG00000009460 #34
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218.a #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01090000260003.a.b.b.a.a.a.b.b.p	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000015813.g.d	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.hb #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b
Hybrid Bos Indicus	MODERN SPECIES	1	PIGB (ENSBIXG00005006358) #10	CCPG1 (ENSBIXG00005017475) #9	PIERCE2 (ENSBIXG00005017539) #11	DNAAF4 (ENSBIXG00005017633) #12	ENSBIXG00005017681	PRTG (ENSBIXG00005017699) #15	ENSBIXG00005017728	NEDD4 (ENSBIXG00005018225) #16	RFX7 (ENSBIXG00005002962) #18	ENSBIXG00005002965	ENSBIXG00005018317	TEX9 (ENSBIXG00005018366) #19	MNS1 (ENSBIXG00005018404) #20	ENSBIXG00005018423	ZNF280D (ENSBIXG00005018538) #21	TCF12 (ENSBIXG00005018770) #22	CGNL1 (ENSBIXG00005018869) #24	MYZAP (ENSBIXG00005019030) #25	POLR2M (ENSBIXG00005019093) ##25	ALDH1A2 (ENSBIXG00005019214) #26	AQP9 (ENSBIXG00005019291) #28	LIPC (ENSBIXG00005003152) #29	ADAM10 (ENSBIXG00005019471) #30	ENSBIXG00005019503	MINDY2 (ENSBIXG00005019539) #31	SLTM (ENSBIXG00005003196) #32	RNF111 (ENSBIXG00005019694) #33	CCNB2 (ENSBIXG00005019754) #34	MYO1E (ENSBIXG00005019811) #35	FAM81A (ENSBIXG00005005864)	ENSBIXG00005019886
Cow	DUPLICATION
Cow	MODERN SPECIES	1	UNC13C (ENSBTAG00000025522)	RSL24D1 (ENSBTAG00000001342) ##7	RAB27A (ENSBTAG00000012408) #8	PIGB (ENSBTAG00000012740) #10	CCPG1 (ENSBTAG00000012741) #9	PIERCE2 (ENSBTAG00000051675) #11	DNAAF4 (ENSBTAG00000031388) #12	PYGO1 (ENSBTAG00000009151) #14	PRTG (ENSBTAG00000005848) #15	ENSBTAG00000031396	NEDD4 (ENSBTAG00000013793) #16	RFX7 (ENSBTAG00000000565) #18	TEX9 (ENSBTAG00000031433) #19	MNS1 (ENSBTAG00000000271) #20	ENSBTAG00000052391 #21	ENSBTAG00000053119 #22	TCF12 (ENSBTAG00000002586) #22	CGNL1 (ENSBTAG00000008575) #24	MYZAP (ENSBTAG00000002194) #25	POLR2M (ENSBTAG00000040384) ##25	ALDH1A2 (ENSBTAG00000010119) #26	AQP9 (ENSBTAG00000013452) #28	ENSBTAG00000049039	LIPC (ENSBTAG00000005479) #29	ADAM10 (ENSBTAG00000005481) #30	ENSBTAG00000049189	MINDY2 (ENSBTAG00000012391) #31	SLTM (ENSBTAG00000011319) #32	RNF111 (ENSBTAG00000014181) #33	CCNB2 (ENSBTAG00000005269) #34	MYO1E (ENSBTAG00000021538) #35
Cow	MODERN SPECIES	1	RSL24D1 (ENSBTAG00000001342) ##7	RAB27A (ENSBTAG00000012408) #8	PIGB (ENSBTAG00000012740) #10	CCPG1 (ENSBTAG00000012741) #9	PIERCE2 (ENSBTAG00000051675) #11	DNAAF4 (ENSBTAG00000031388) #12	PYGO1 (ENSBTAG00000009151) #14	PRTG (ENSBTAG00000005848) #15	ENSBTAG00000031396	NEDD4 (ENSBTAG00000013793) #16	RFX7 (ENSBTAG00000000565) #18	TEX9 (ENSBTAG00000031433) #19	MNS1 (ENSBTAG00000000271) #20	ENSBTAG00000052391 #21	ENSBTAG00000053119 #22	TCF12 (ENSBTAG00000002586) #22	CGNL1 (ENSBTAG00000008575) #24	MYZAP (ENSBTAG00000002194) #25	POLR2M (ENSBTAG00000040384) ##25	ALDH1A2 (ENSBTAG00000010119) #26	AQP9 (ENSBTAG00000013452) #28	ENSBTAG00000049039	LIPC (ENSBTAG00000005479) #29	ADAM10 (ENSBTAG00000005481) #30	ENSBTAG00000049189	MINDY2 (ENSBTAG00000012391) #31	SLTM (ENSBTAG00000011319) #32	RNF111 (ENSBTAG00000014181) #33	CCNB2 (ENSBTAG00000005269) #34	MYO1E (ENSBTAG00000021538) #35	FAM81A (ENSBTAG00000014699)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Carnivora	ANCESTRAL SPECIES		ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Felidae	ANCESTRAL SPECIES	1	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Panthera	ANCESTRAL SPECIES	3	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT00390000005254.i.a.b.k.a	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
leopard	MODERN SPECIES	7	RAB27A (ENSPPRG00000016973) #8	PIGBOS1 (ENSPPRG00000021706)	PIGB (ENSPPRG00000021881) #10	CCPG1 (ENSPPRG00000023996) #9	PIERCE2 (ENSPPRG00000023926) #11	DNAAF4 (ENSPPRG00000023889) #12	PYGO1 (ENSPPRG00000023789) #14	PRTG (ENSPPRG00000023644) #15	ENSPPRG00000023548	NEDD4 (ENSPPRG00000001102) #16	RFX7 (ENSPPRG00000002232) #18	TEX9 (ENSPPRG00000003149) #19	MNS1 (ENSPPRG00000003500) #20	ZNF280D (ENSPPRG00000003905) #21	ENSPPRG00000004158	TCF12 (ENSPPRG00000006795) #22	ENSPPRG00000007010	CGNL1 (ENSPPRG00000007520) #24	MYZAP (ENSPPRG00000008038) #25	ENSPPRG00000008155 ##25	ENSPPRG00000008593	AQP9 (ENSPPRG00000008797) #28	ALDH1A2 (ENSPPRG00000009754) #26	LIPC (ENSPPRG00000010248) #29	ADAM10 (ENSPPRG00000010697) #30	MINDY2 (ENSPPRG00000011830) #31	SLTM (ENSPPRG00000012400) #32	ENSPPRG00000022159	RNF111 (ENSPPRG00000012896) #33	CCNB2 (ENSPPRG00000013358) #34	MYO1E (ENSPPRG00000013746) #35
lion	MODERN SPECIES	6	UNC13C (ENSPLOG00000002354)	RSL24D1 (ENSPLOG00000002280) ##7	RAB27A (ENSPLOG00000002213) #8	PIGB (ENSPLOG00000002176) #10	CCPG1 (ENSPLOG00000002113) #9	PIERCE2 (ENSPLOG00000002061) #11	DNAAF4 (ENSPLOG00000002038) #12	PYGO1 (ENSPLOG00000002006) #14	PRTG (ENSPLOG00000001890) #15	ENSPLOG00000001866	NEDD4 (ENSPLOG00000001661) #16	RFX7 (ENSPLOG00000001487) #18	TEX9 (ENSPLOG00000001413) #19	MNS1 (ENSPLOG00000001293) #20	ZNF280D (ENSPLOG00000001244) #21	TCF12 (ENSPLOG00000001054) #22	CGNL1 (ENSPLOG00000000873) #24	MYZAP (ENSPLOG00000000827) #25	POLR2M (ENSPLOG00000000778) ##25	AQP9 (ENSPLOG00000000752) #28	ALDH1A2 (ENSPLOG00000000630) #26	LIPC (ENSPLOG00000000384) #29	ADAM10 (ENSPLOG00000020025) #30	MINDY2 (ENSPLOG00000019972) #31	SLTM (ENSPLOG00000019866) #32	RNF111 (ENSPLOG00000019792) #33	CCNB2 (ENSPLOG00000019712) #34	MYO1E (ENSPLOG00000019658) #35	FAM81A (ENSPLOG00000019602)	GCNT3 (ENSPLOG00000019578)	GTF2A2 (ENSPLOG00000019533)
Tiger	MODERN SPECIES	204															ENSPTIG00000009862 #21	TCF12 (ENSPTIG00000010407) #22	CGNL1 (ENSPTIG00000016583) #24	MYZAP (ENSPTIG00000017186) #25	POLR2M (ENSPTIG00000019395) ##25	ALDH1A2 (ENSPTIG00000021049) #26	AQP9 (ENSPTIG00000016760) #28	LIPC (ENSPTIG00000017416) #29	ADAM10 (ENSPTIG00000020483) #30	MINDY2 (ENSPTIG00000021426) #31	SLTM (ENSPTIG00000021933) #32	RNF111 (ENSPTIG00000022057) #33	CCNB2 (ENSPTIG00000022086) #34	MYO1E (ENSPTIG00000002391) #35	FAM81A (ENSPTIG00000007107)	GTF2A2 (ENSPTIG00000008342)	BNIP2 (ENSPTIG00000010345)
Cat	MODERN SPECIES	237	UNC13C (ENSFCAG00000022273)	RSL24D1 (ENSFCAG00000034397) ##7	RAB27A (ENSFCAG00000042960) #8	PIGB (ENSFCAG00000031267) #10	CCPG1 (ENSFCAG00000003265) #9	PIERCE2 (ENSFCAG00000036319) #11	DNAAF4 (ENSFCAG00000029550) #12	PYGO1 (ENSFCAG00000011165) #14	PRTG (ENSFCAG00000013524) #15	NEDD4 (ENSFCAG00000008280) #16	RFX7 (ENSFCAG00000029408) #18	ENSFCAG00000045000	TEX9 (ENSFCAG00000008935) #19	MNS1 (ENSFCAG00000042011) #20	ZNF280D (ENSFCAG00000030645) #21	TCF12 (ENSFCAG00000031674) #22	CGNL1 (ENSFCAG00000018538) #24	MYZAP (ENSFCAG00000014906) #25	POLR2M (ENSFCAG00000041205) ##25	AQP9 (ENSFCAG00000028244) #28	ALDH1A2 (ENSFCAG00000033553) #26	LIPC (ENSFCAG00000008009) #29	MINDY2 (ENSFCAG00000025467) #31	ADAM10 (ENSFCAG00000023688) #32	RNF111 (ENSFCAG00000009412) #33	CCNB2 (ENSFCAG00000009413) #34	MYO1E (ENSFCAG00000009414) #35	FAM81A (ENSFCAG00000022356)	GCNT3 (ENSFCAG00000012912)	GTF2A2 (ENSFCAG00000012914)	BNIP2 (ENSFCAG00000012916)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Ursidae	ANCESTRAL SPECIES	21	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00960000187413	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898.j.a #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Ursus	ANCESTRAL SPECIES	73	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898.j.a #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
American black bear	MODERN SPECIES	3998																TCF12 (ENSUAMG00000017313) #22
Polar bear	MODERN SPECIES	282	ENSUMAG00000023407	UNC13C (ENSUMAG00000023410)	RSL24D1 (ENSUMAG00000023425) ##7	RAB27A (ENSUMAG00000023439) #8	PIGB (ENSUMAG00000023451) #10	CCPG1 (ENSUMAG00000023459) #9	PIERCE2 (ENSUMAG00000023462) #11	DNAAF4 (ENSUMAG00000023467) #12	PYGO1 (ENSUMAG00000023471) #14	PRTG (ENSUMAG00000023474) #15	NEDD4 (ENSUMAG00000023487) #16	RFX7 (ENSUMAG00000023577) #18	TEX9 (ENSUMAG00000023578) #19	MNS1 (ENSUMAG00000023585) #20	ZNF280D (ENSUMAG00000023594) #21	TCF12 (ENSUMAG00000023601) #22	CGNL1 (ENSUMAG00000023607) #24	MYZAP (ENSUMAG00000023621) #25	POLR2M (ENSUMAG00000023632) ##25	ALDH1A2 (ENSUMAG00000023636) #26	AQP9 (ENSUMAG00000023641) #28	LIPC (ENSUMAG00000023645) #29	ADAM10 (ENSUMAG00000023649) #30	MINDY2 (ENSUMAG00000023650) #31	SLTM (ENSUMAG00000023678) #32	RNF111 (ENSUMAG00000023950) #33	CCNB2 (ENSUMAG00000023954) #34	MYO1E (ENSUMAG00000023955) #35	FAM81A (ENSUMAG00000023957)	GCNT3 (ENSUMAG00000023958)	GTF2A2 (ENSUMAG00000023959)
Giant Panda	MODERN SPECIES	15	RAB27A (ENSAMEG00000023639) #8	PIGBOS1 (ENSAMEG00000030426)	PIGB (ENSAMEG00000018381) #10	CCPG1 (ENSAMEG00000018378) #9	PIERCE2 (ENSAMEG00000023945) #11	DNAAF4 (ENSAMEG00000018375) #12	PYGO1 (ENSAMEG00000018374) #14	PRTG (ENSAMEG00000018373) #15	NEDD4 (ENSAMEG00000018371) #16	RFX7 (ENSAMEG00000018368) #18	ENSAMEG00000030897	TEX9 (ENSAMEG00000018367) #19	MNS1 (ENSAMEG00000003083) #20	ZNF280D (ENSAMEG00000003065) #21	ENSAMEG00000026462	TCF12 (ENSAMEG00000010612) #22	CGNL1 (ENSAMEG00000010575) #24	MYZAP (ENSAMEG00000010550) #25	ENSAMEG00000026876 ##25	AQP9 (ENSAMEG00000010516) #28	ENSAMEG00000010508	ENSAMEG00000010535 #26	LIPC (ENSAMEG00000003097) #29	ADAM10 (ENSAMEG00000003056) #30	MINDY2 (ENSAMEG00000026245) #31	SLTM (ENSAMEG00000004537) #32	RNF111 (ENSAMEG00000004568) #33	CCNB2 (ENSAMEG00000004603) #34	MYO1E (ENSAMEG00000004643) #35	FAM81A (ENSAMEG00000004782)	GCNT3 (ENSAMEG00000018673)
Mustelinae	ANCESTRAL SPECIES	57	ENSGT00940000156594	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
American mink	MODERN SPECIES	132	RLP24 (ENSNVIG00000001933) ##7	RAB27A (ENSNVIG00000001904) #8	PIGB (ENSNVIG00000001873) #10	CCPG1 (ENSNVIG00000001839) #9	PIERCE2 (ENSNVIG00000001827) #11	DYXC1 (ENSNVIG00000001732) #12	PYGO1 (ENSNVIG00000001708) #14	PRTG (ENSNVIG00000001680) #15	NEDD4 (ENSNVIG00000001441) #16	RFX7 (ENSNVIG00000001344) #18	TEX9 (ENSNVIG00000001262) #19	MNS1 (ENSNVIG00000001219) #20	ZNF280D (ENSNVIG00000001156) #21	ENSNVIG00000001140	ENSNVIG00000001115	TCF12 (ENSNVIG00000000931) #22	CGNL1 (ENSNVIG00000000923) #24	MYZAP (ENSNVIG00000000857) #25	GRL1A (ENSNVIG00000000834) ##25	AQP9 (ENSNVIG00000000811) #28	AL1A2 (ENSNVIG00000000690) #26	LIPC (ENSNVIG00000000464) #29	ADA10 (ENSNVIG00000000408) #30	ENSNVIG00000000402	MINDY2 (ENSNVIG00000000373) #31	SLTM (ENSNVIG00000000365) #32	ENSNVIG00000000361 #32	ENSNVIG00000000355	RNF111 (ENSNVIG00000000316) #33	CCNB2 (ENSNVIG00000000283) #34	MYO1E (ENSNVIG00000000225) #35
Ferret	MODERN SPECIES	403																TCF12 (ENSMPUG00000004438) #22	CGNL1 (ENSMPUG00000004423) #24	MYZAP (ENSMPUG00000004417) #25	POLR2M (ENSMPUG00000004414) ##25	ALDH1A2 (ENSMPUG00000004407) #26	AQP9 (ENSMPUG00000004398) #28	ENSMPUG00000004389	LIPC (ENSMPUG00000004381) #29	ADAM10 (ENSMPUG00000004375) #30	MINDY2 (ENSMPUG00000004320) #31	SLTM (ENSMPUG00000004229) #32	RNF111 (ENSMPUG00000004214) #33	CCNB2 (ENSMPUG00000004129) #34	MYO1E (ENSMPUG00000004116) #35	FAM81A (ENSMPUG00000004110)
Canidae	ANCESTRAL SPECIES	15	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00390000006696.bb	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Dingo	DUPLICATION
Dingo	MODERN SPECIES	205	RSL24D1 (ENSCAFG00020012749) ##7	RAB27A (ENSCAFG00020012748) #8	PIGB (ENSCAFG00020012711) #10	CCPG1 (ENSCAFG00020012696) #9	PIERCE2 (ENSCAFG00020012693) #11	DNAAF4 (ENSCAFG00020012682) #12	PYGO1 (ENSCAFG00020012681) #14	PRTG (ENSCAFG00020012669) #15	NEDD4 (ENSCAFG00020012451) #16	RFX7 (ENSCAFG00020012426) #18	TEX9 (ENSCAFG00020012413) #19	MNS1 (ENSCAFG00020012394) #20	ENSCAFG00020012380	ZNF280D (ENSCAFG00020012271) #21	ENSCAFG00020012249 #22	ENSCAFG00020012159 #22	CGNL1 (ENSCAFG00020011993) #24	ENSCAFG00020011988	MYZAP (ENSCAFG00020011984) #25	POLR2M (ENSCAFG00020011980) ##25	ALDH1A2 (ENSCAFG00020011975) #26	ENSCAFG00020011974	AQP9 (ENSCAFG00020011973) #28	LIPC (ENSCAFG00020011968) #29	ADAM10 (ENSCAFG00020011960) #30	MINDY2 (ENSCAFG00020011948) #31	SLTM (ENSCAFG00020011253) #32	RNF111 (ENSCAFG00020011102) #33	CCNB2 (ENSCAFG00020011050) #34	MYO1E (ENSCAFG00020011013) #35	FAM81A (ENSCAFG00020010984)
Dingo	MODERN SPECIES	205	UNC13C (ENSCAFG00020012791)	RSL24D1 (ENSCAFG00020012749) ##7	RAB27A (ENSCAFG00020012748) #8	PIGB (ENSCAFG00020012711) #10	CCPG1 (ENSCAFG00020012696) #9	PIERCE2 (ENSCAFG00020012693) #11	DNAAF4 (ENSCAFG00020012682) #12	PYGO1 (ENSCAFG00020012681) #14	PRTG (ENSCAFG00020012669) #15	NEDD4 (ENSCAFG00020012451) #16	RFX7 (ENSCAFG00020012426) #18	TEX9 (ENSCAFG00020012413) #19	MNS1 (ENSCAFG00020012394) #20	ENSCAFG00020012380	ZNF280D (ENSCAFG00020012271) #21	ENSCAFG00020012249 #22	ENSCAFG00020012159 #22	CGNL1 (ENSCAFG00020011993) #24	ENSCAFG00020011988	MYZAP (ENSCAFG00020011984) #25	POLR2M (ENSCAFG00020011980) ##25	ALDH1A2 (ENSCAFG00020011975) #26	ENSCAFG00020011974	AQP9 (ENSCAFG00020011973) #28	LIPC (ENSCAFG00020011968) #29	ADAM10 (ENSCAFG00020011960) #30	MINDY2 (ENSCAFG00020011948) #31	SLTM (ENSCAFG00020011253) #32	RNF111 (ENSCAFG00020011102) #33	CCNB2 (ENSCAFG00020011050) #34	MYO1E (ENSCAFG00020011013) #35
Dog	MODERN SPECIES	23	WDR72 (ENSCAFG00845028013)	UNC13C (ENSCAFG00845028243)	RSL24D1 (ENSCAFG00845028485) ##7	RAB27A (ENSCAFG00845028531) #8	PIGB (ENSCAFG00845028570) #10	CCPG1 (ENSCAFG00845028620) #9	PIERCE2 (ENSCAFG00845028715) #11	DNAAF4 (ENSCAFG00845028777) #12	PYGO1 (ENSCAFG00845028910) #14	PRTG (ENSCAFG00845028953) #15	NEDD4 (ENSCAFG00845029105) #16	RFX7 (ENSCAFG00845029424) #18	TEX9 (ENSCAFG00845029502) #19	MNS1 (ENSCAFG00845029645) #20	ZNF280D (ENSCAFG00845029677) #21	TCF12 (ENSCAFG00845029773) #22	CGNL1 (ENSCAFG00845029856) #24	ENSCAFG00845029942	ENSCAFG00845030020 #25	ALDH1A2 (ENSCAFG00845030136) #26	ENSCAFG00845030206	AQP9 (ENSCAFG00845015193) #28	LIPC (ENSCAFG00845015307) #29	ADAM10 (ENSCAFG00845015520) #30	MINDY2 (ENSCAFG00845015725) #31	SLTM (ENSCAFG00845015853) #32	RNF111 (ENSCAFG00845016023) #33	CCNB2 (ENSCAFG00845016098) #34	MYO1E (ENSCAFG00845016229) #35	ENSCAFG00845016391	FAM81A (ENSCAFG00845016440)
Red fox	DUPLICATION
Red fox	MODERN SPECIES		RSL24D1 (ENSVVUG00000000235) #7	RAB27A (ENSVVUG00000000413) #8	PIGB (ENSVVUG00000000616) #10	CCPG1 (ENSVVUG00000000630) #9	ENSVVUG00000000655 #11	DNAAF4 (ENSVVUG00000000666) #12	PYGO1 (ENSVVUG00000000736) #14	PRTG (ENSVVUG00000000755) #15	ENSVVUG00000000785	NEDD4 (ENSVVUG00000000843) #16	RFX7 (ENSVVUG00000000901) #18	TEX9 (ENSVVUG00000000942) #19	MNS1 (ENSVVUG00000000969) #20	ZNF280D (ENSVVUG00000001009) #21	ENSVVUG00000001065 #22	TCF12 (ENSVVUG00000001081) #22	CGNL1 (ENSVVUG00000001119) #24	MYZAP (ENSVVUG00000001200) #25	POLR2M (ENSVVUG00000001253) ##25	ALDH1A2 (ENSVVUG00000001283) #26	AQP9 (ENSVVUG00000001306) #28	LIPC (ENSVVUG00000001352) #29	ADAM10 (ENSVVUG00000001386) #30	MINDY2 (ENSVVUG00000001426) #31	SLTM (ENSVVUG00000001450) #32	RNF111 (ENSVVUG00000001485) #33	CCNB2 (ENSVVUG00000001497) #34	MYO1E (ENSVVUG00000001541) #35	ENSVVUG00000001567	FAM81A (ENSVVUG00000001584)	GCNT3 (ENSVVUG00000001601)
Red fox	MODERN SPECIES		UNC13C (ENSVVUG00000000196)	RSL24D1 (ENSVVUG00000000235) #7	RAB27A (ENSVVUG00000000413) #8	PIGB (ENSVVUG00000000616) #10	CCPG1 (ENSVVUG00000000630) #9	ENSVVUG00000000655 #11	DNAAF4 (ENSVVUG00000000666) #12	PYGO1 (ENSVVUG00000000736) #14	PRTG (ENSVVUG00000000755) #15	ENSVVUG00000000785	NEDD4 (ENSVVUG00000000843) #16	RFX7 (ENSVVUG00000000901) #18	TEX9 (ENSVVUG00000000942) #19	MNS1 (ENSVVUG00000000969) #20	ZNF280D (ENSVVUG00000001009) #21	ENSVVUG00000001065 #22	TCF12 (ENSVVUG00000001081) #22	CGNL1 (ENSVVUG00000001119) #24	MYZAP (ENSVVUG00000001200) #25	POLR2M (ENSVVUG00000001253) ##25	ALDH1A2 (ENSVVUG00000001283) #26	AQP9 (ENSVVUG00000001306) #28	LIPC (ENSVVUG00000001352) #29	ADAM10 (ENSVVUG00000001386) #30	MINDY2 (ENSVVUG00000001426) #31	SLTM (ENSVVUG00000001450) #32	RNF111 (ENSVVUG00000001485) #33	CCNB2 (ENSVVUG00000001497) #34	MYO1E (ENSVVUG00000001541) #35	ENSVVUG00000001567	FAM81A (ENSVVUG00000001584)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00960000192699	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010018108	ENSRFEG00010018069 ##7	ENSRFEG00010018018	RAB27A (ENSRFEG00010017986) #8	PIGB (ENSRFEG00010017955) #10	CCPG1 (ENSRFEG00010017828) #9	PIERCE2 (ENSRFEG00010017771) #11	DNAAF4 (ENSRFEG00010017472) #12	PYGO1 (ENSRFEG00010017366) #14	PRTG (ENSRFEG00010017056) #15	NEDD4 (ENSRFEG00010015941) #16	RFX7 (ENSRFEG00010015861) #18	TEX9 (ENSRFEG00010015660) #19	MNS1 (ENSRFEG00010015563) #20	ZNF280D (ENSRFEG00010015417) #21	TCF12 (ENSRFEG00010015112) #22	CGNL1 (ENSRFEG00010015008) #24	MYZAP (ENSRFEG00010014850) #25	POLR2M (ENSRFEG00010014706) ##25	AQP9 (ENSRFEG00010014557) #28	ALDH1A2 (ENSRFEG00010014030) #26	LIPC (ENSRFEG00010013904) #29	ADAM10 (ENSRFEG00010013728) #30	ENSRFEG00010013690	MINDY2 (ENSRFEG00010013660) #31	SLTM (ENSRFEG00010013490) #32	ENSRFEG00010013430	RNF111 (ENSRFEG00010013280) #33	CCNB2 (ENSRFEG00010013118) #34	MYO1E (ENSRFEG00010013049) #35	FAM81A (ENSRFEG00010012996)
Microbat	MODERN SPECIES	960	WDR72 (ENSMLUG00000010979)	UNC13C (ENSMLUG00000002661)	RSL24D1 (ENSMLUG00000011976) ##7	RAB27A (ENSMLUG00000009147) #8	ENSMLUG00000022472 ##7	PIGB (ENSMLUG00000009162) #10	CCPG1 (ENSMLUG00000009218) #9	DNAAF4 (ENSMLUG00000029069) #12	PYGO1 (ENSMLUG00000006301) #14	PRTG (ENSMLUG00000006308) #15	NEDD4 (ENSMLUG00000006323) #16	RFX7 (ENSMLUG00000028676) #18	TEX9 (ENSMLUG00000009056) #19	MNS1 (ENSMLUG00000009072) #20	ZNF280D (ENSMLUG00000001958) #21	TCF12 (ENSMLUG00000006205) #22	ENSMLUG00000028449	ENSMLUG00000028181	CGNL1 (ENSMLUG00000006276) #24	MYZAP (ENSMLUG00000010564) #25	POLR2M (ENSMLUG00000016026) ##25	ALDH1A2 (ENSMLUG00000002098) #26	ENSMLUG00000001108 #28	LIPC (ENSMLUG00000027865) #29	ENSMLUG00000022615	ADAM10 (ENSMLUG00000005663) #30	MINDY2 (ENSMLUG00000000733) #31	SLTM (ENSMLUG00000000742) #32	RNF111 (ENSMLUG00000013496) #33	CCNB2 (ENSMLUG00000013505) #34
Megabat	MODERN SPECIES	926																TCF12 (ENSPVAG00000006184) #22
Equus	ANCESTRAL SPECIES	4	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Horse	MODERN SPECIES		ENSECAG00000036510	ENSECAG00000052545	DNAAF4 (ENSECAG00000010951) #12	PYGO1 (ENSECAG00000010191) #14	ENSECAG00000052784	PRTG (ENSECAG00000012671) #15	NEDD4 (ENSECAG00000009456) #16	RFX7 (ENSECAG00000002379) #18	ENSECAG00000045204	TEX9 (ENSECAG00000024271) #19	MNS1 (ENSECAG00000020945) #20	ENSECAG00000059798	ZNF280D (ENSECAG00000008139) #21	ENSECAG00000055172	ENSECAG00000045013	TCF12 (ENSECAG00000011678) #22	CGNL1 (ENSECAG00000011325) #24	ALDH1A2 (ENSECAG00000014750) #26	ENSECAG00000046764	AQP9 (ENSECAG00000012789) #28	LIPC (ENSECAG00000020896) #29	ADAM10 (ENSECAG00000007963) #30	ENSECAG00000052250	ENSECAG00000059129	MINDY2 (ENSECAG00000019456) #31	SLTM (ENSECAG00000011267) #32	RNF111 (ENSECAG00000024602) #33	CCNB2 (ENSECAG00000014813) #34	MYO1E (ENSECAG00000024352) #35	ENSECAG00000038907	FAM81A (ENSECAG00000012692)
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11	ENSEASG00005033219	PIGB (ENSEASG00005009821) #10	CCPG1 (ENSEASG00005009809) #9	PIERCE2 (ENSEASG00005028334) #11	ENSEASG00005027098	ENSEASG00005031272	DNAAF4 (ENSEASG00005009799) #12	PYGO1 (ENSEASG00005024573) #14	PRTG (ENSEASG00005009792) #15	NEDD4 (ENSEASG00005009782) #16	RFX7 (ENSEASG00005029468) #18	TEX9 (ENSEASG00005009768) #19	MNS1 (ENSEASG00005009763) #20	ENSEASG00005024241	ENSEASG00005025175 #21	ENSEASG00005009750 #22	ENSEASG00005006845 #22	CGNL1 (ENSEASG00005006838) #24	MYZAP (ENSEASG00005006833) #25	POLR2M (ENSEASG00005006830) ##25	ALDH1A2 (ENSEASG00005006828) #26	AQP9 (ENSEASG00005006825) #28	LIPC (ENSEASG00005006810) #29	ADAM10 (ENSEASG00005006804) #30	MINDY2 (ENSEASG00005006799) #31	SLTM (ENSEASG00005006792) #32	RNF111 (ENSEASG00005006789) #33	CCNB2 (ENSEASG00005006782) #34	MYO1E (ENSEASG00005006777) #35	FAM81A (ENSEASG00005006773)	GCNT3 (ENSEASG00005006772)
Donkey	MODERN SPECIES	11	PIGB (ENSEASG00005009821) #10	CCPG1 (ENSEASG00005009809) #9	PIERCE2 (ENSEASG00005028334) #11	ENSEASG00005027098	ENSEASG00005031272	DNAAF4 (ENSEASG00005009799) #12	PYGO1 (ENSEASG00005024573) #14	PRTG (ENSEASG00005009792) #15	NEDD4 (ENSEASG00005009782) #16	RFX7 (ENSEASG00005029468) #18	TEX9 (ENSEASG00005009768) #19	MNS1 (ENSEASG00005009763) #20	ENSEASG00005024241	ENSEASG00005025175 #21	ENSEASG00005009750 #22	ENSEASG00005006845 #22	CGNL1 (ENSEASG00005006838) #24	MYZAP (ENSEASG00005006833) #25	POLR2M (ENSEASG00005006830) ##25	ALDH1A2 (ENSEASG00005006828) #26	AQP9 (ENSEASG00005006825) #28	LIPC (ENSEASG00005006810) #29	ADAM10 (ENSEASG00005006804) #30	MINDY2 (ENSEASG00005006799) #31	SLTM (ENSEASG00005006792) #32	RNF111 (ENSEASG00005006789) #33	CCNB2 (ENSEASG00005006782) #34	MYO1E (ENSEASG00005006777) #35	FAM81A (ENSEASG00005006773)	GCNT3 (ENSEASG00005006772)	GTF2A2 (ENSEASG00005006771)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000159331.b	ENSGT00390000014572
Afrotheria	ANCESTRAL SPECIES	58			ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572	ENSGT00940000158531
Tenrec	MODERN SPECIES	3642																TCF12 (ENSETEG00000007295) #22
Afrotheria_a	ANCESTRAL SPECIES	56			ENSGT00940000155174	ENSGT00950000183105.B.b ##7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00390000014572	ENSGT00940000158531
Hyrax	MODERN SPECIES	2982																TCF12 (ENSPCAG00000002363) #22
Elephant	MODERN SPECIES	466	ENSLAFG00000007902	RSL24D1 (ENSLAFG00000004679) ##7	RAB27A (ENSLAFG00000004684) #8	PIGB (ENSLAFG00000014508) #10	CCPG1 (ENSLAFG00000026362) #9	ENSLAFG00000032297	DNAAF4 (ENSLAFG00000007916) #12	PYGO1 (ENSLAFG00000016075) #14	PRTG (ENSLAFG00000016070) #15	NEDD4 (ENSLAFG00000012649) #16	ENSLAFG00000031960	RFX7 (ENSLAFG00000018745) #18	TEX9 (ENSLAFG00000016272) #19	MNS1 (ENSLAFG00000013495) #20	ZNF280D (ENSLAFG00000005060) #21	TCF12 (ENSLAFG00000010546) #22	CGNL1 (ENSLAFG00000015742) #24	MYZAP (ENSLAFG00000013840) #25	POLR2M (ENSLAFG00000028328) ##25	ALDH1A2 (ENSLAFG00000018094) #26	AQP9 (ENSLAFG00000012160) #28	ENSLAFG00000028987	LIPC (ENSLAFG00000003533) #29	ADAM10 (ENSLAFG00000003535) #30	MINDY2 (ENSLAFG00000026046) #31	SLTM (ENSLAFG00000017922) #32	RNF111 (ENSLAFG00000004816) #33	CCNB2 (ENSLAFG00000004822) #34	MYO1E (ENSLAFG00000004825) #35	FAM81A (ENSLAFG00000014758)	GTF2A2 (ENSLAFG00000010773)
Xenarthra	ANCESTRAL SPECIES	307																ENSGT00940000155047 #22	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Armadillo	MODERN SPECIES	959																ENSDNOG00000003182 #22	MYZAP (ENSDNOG00000003966) #25	ENSDNOG00000042909 ##25	ENSDNOG00000044354	ALDH1A2 (ENSDNOG00000010541) #26	AQP9 (ENSDNOG00000044325) #28	LIPC (ENSDNOG00000040890) #29	ENSDNOG00000036584	ADAM10 (ENSDNOG00000040738) #30	MINDY2 (ENSDNOG00000013776) #31	SLTM (ENSDNOG00000002975) #32	RNF111 (ENSDNOG00000002542) #33	CCNB2 (ENSDNOG00000033547) #34	MYO1E (ENSDNOG00000003626) #35	ENSDNOG00000032898	FAM81A (ENSDNOG00000034819)
Sloth	MODERN SPECIES	3347																TCF12 (ENSCHOG00000003168) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B.r	ENSGT00940000156594
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000008022	RSL24D1 (ENSSHAG00000029603) #7	RAB27A (ENSSHAG00000030386) #8	CCPG1 (ENSSHAG00000010560) #9	PIGB (ENSSHAG00000010715) #10	ENSSHAG00000022406 #11	PYGO1 (ENSSHAG00000009649) #14	PRTG (ENSSHAG00000007825) #15	ENSSHAG00000006925	NEDD4 (ENSSHAG00000005132) #16	RFX7 (ENSSHAG00000003875) #18	ENSSHAG00000022866	TEX9 (ENSSHAG00000017749) #19	MNS1 (ENSSHAG00000017711) #20	ZNF280D (ENSSHAG00000017405) #21	ENSSHAG00000023900 #22	ENSSHAG00000015935 #22	CGNL1 (ENSSHAG00000014820) #24	MYZAP (ENSSHAG00000014214) #25	POLR2M (ENSSHAG00000013954) ##25	ALDH1A2 (ENSSHAG00000012217) #26	AQP9 (ENSSHAG00000011444) #28	LIPC (ENSSHAG00000006097) #29	ADAM10 (ENSSHAG00000025847) #30	MINDY2 (ENSSHAG00000029720) #31	SLTM (ENSSHAG00000015395) #32	RNF111 (ENSSHAG00000014920) #33	CCNB2 (ENSSHAG00000014698) #34	MYO1E (ENSSHAG00000014042) #35	ENSSHAG00000012883	ENSSHAG00000011727
Tasmanian devil	MODERN SPECIES	1	RSL24D1 (ENSSHAG00000029603) #7	RAB27A (ENSSHAG00000030386) #8	CCPG1 (ENSSHAG00000010560) #9	PIGB (ENSSHAG00000010715) #10	ENSSHAG00000022406 #11	PYGO1 (ENSSHAG00000009649) #14	PRTG (ENSSHAG00000007825) #15	ENSSHAG00000006925	NEDD4 (ENSSHAG00000005132) #16	RFX7 (ENSSHAG00000003875) #18	ENSSHAG00000022866	TEX9 (ENSSHAG00000017749) #19	MNS1 (ENSSHAG00000017711) #20	ZNF280D (ENSSHAG00000017405) #21	ENSSHAG00000023900 #22	ENSSHAG00000015935 #22	CGNL1 (ENSSHAG00000014820) #24	MYZAP (ENSSHAG00000014214) #25	POLR2M (ENSSHAG00000013954) ##25	ALDH1A2 (ENSSHAG00000012217) #26	AQP9 (ENSSHAG00000011444) #28	LIPC (ENSSHAG00000006097) #29	ADAM10 (ENSSHAG00000025847) #30	MINDY2 (ENSSHAG00000029720) #31	SLTM (ENSSHAG00000015395) #32	RNF111 (ENSSHAG00000014920) #33	CCNB2 (ENSSHAG00000014698) #34	MYO1E (ENSSHAG00000014042) #35	ENSSHAG00000012883	ENSSHAG00000011727	LRRC49 (ENSSHAG00000023183)
Diprotodontia	ANCESTRAL SPECIES		ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B.r	ENSGT00940000156594
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B.r	ENSGT00940000156594
Common wonbat	MODERN SPECIES	1076	RAB27A (ENSVURG00010005252) #8	PIGBOS1 (ENSVURG00010005259)	PIGB (ENSVURG00010005264) #10	CCPG1 (ENSVURG00010005273) #9	PIERCE2 (ENSVURG00010005284) #11	DNAAF4 (ENSVURG00010005294) #12	PYGO1 (ENSVURG00010005305) #14	PRTG (ENSVURG00010005313) #15	NEDD4 (ENSVURG00010005346) #16	RFX7 (ENSVURG00010005605) #18	TEX9 (ENSVURG00010005626) #19	MNS1 (ENSVURG00010005636) #20	ENSVURG00010005647	ENSVURG00010005653 #21	ENSVURG00010005679 #21	TCF12 (ENSVURG00010005698) #22	CGNL1 (ENSVURG00010005749) #24	MYZAP (ENSVURG00010005763) #25	POLR2M (ENSVURG00010005805) ##25	ENSVURG00010005812 #26	AQP9 (ENSVURG00010005824) #28
koala	MODERN SPECIES		RSL24D1 (ENSPCIG00000007604) #7	RAB27A (ENSPCIG00000030883) #8	PIGBOS1 (ENSPCIG00000031962)	PIGB (ENSPCIG00000011739) #10	CCPG1 (ENSPCIG00000011741) #9	PIERCE2 (ENSPCIG00000011745) #11	DNAAF4 (ENSPCIG00000031568) #12	PYGO1 (ENSPCIG00000024934) #14	PRTG (ENSPCIG00000024927) #15	ENSPCIG00000009027	NEDD4 (ENSPCIG00000024892) #16	RFX7 (ENSPCIG00000018497) #18	TEX9 (ENSPCIG00000018498) #19	MNS1 (ENSPCIG00000018499) #20	ZNF280D (ENSPCIG00000018502) #21	TCF12 (ENSPCIG00000026273) #22	CGNL1 (ENSPCIG00000026263) #24	MYZAP (ENSPCIG00000032158) #25	POLR2M (ENSPCIG00000026255) ##25	ALDH1A2 (ENSPCIG00000026253) #26	AQP9 (ENSPCIG00000036207) #28	LIPC (ENSPCIG00000028345) #29	ADAM10 (ENSPCIG00000028347) #30	MINDY2 (ENSPCIG00000028352) #31	SLTM (ENSPCIG00000028356) #32	ENSPCIG00000028362	RNF111 (ENSPCIG00000023892) #33	CCNB2 (ENSPCIG00000023888) #34	MYO1E (ENSPCIG00000023881) #35	FAM81A (ENSPCIG00000023876)	ENSPCIG00000023869
Wallaby	MODERN SPECIES	4762																TCF12 (ENSMEUG00000008928) #22
Opossum	MODERN SPECIES		ENSMODG00000037906	RSL24D1 (ENSMODG00000036826) #7	RAB27A (ENSMODG00000007980) #8	PIGB (ENSMODG00000007999) #10	ENSMODG00000008020 #9	PIERCE2 (ENSMODG00000050524) #11	ENSMODG00000037550	DNAAF4 (ENSMODG00000008053) #12	PRTG (ENSMODG00000008078) #15	ENSMODG00000008121 #16	RFX7 (ENSMODG00000008136) #18	ENSMODG00000008144 #19	MNS1 (ENSMODG00000008165) #20	ZNF280D (ENSMODG00000008223) #21	ENSMODG00000051438	TCF12 (ENSMODG00000008311) #22	CGNL1 (ENSMODG00000008365) #24	MYZAP (ENSMODG00000008437) #25	ENSMODG00000008459 ##25	ENSMODG00000048733	ALDH1A2 (ENSMODG00000008641) #26	ENSMODG00000008662 #28	ENSMODG00000038854	LIPC (ENSMODG00000008689) #29	ADAM10 (ENSMODG00000008735) #30	ENSMODG00000039109	MINDY2 (ENSMODG00000008761) #31	ENSMODG00000008794 #32	RNF111 (ENSMODG00000008829) #33	CCNB2 (ENSMODG00000008862) #34	MYO1E (ENSMODG00000008886) #35
Platypus	MODERN SPECIES	19	UNC13C (ENSOANG00000049555)	RSL24D1 (ENSOANG00000038127) #7	RAB27A (ENSOANG00000001183) #8	PIGBOS1 (ENSOANG00000045389)	PIGB (ENSOANG00000008547) #10	CCPG1 (ENSOANG00000008542) #9	ENSOANG00000040868 #11	DNAAF4 (ENSOANG00000008539) #12	PYGO1 (ENSOANG00000008537) #14	PRTG (ENSOANG00000008531) #15	NEDD4 (ENSOANG00000008529) #16	RFX7 (ENSOANG00000008526) #18	ENSOANG00000008525 #19	MNS1 (ENSOANG00000009459) #20	ZNF280D (ENSOANG00000046608) #21	TCF12 (ENSOANG00000009462) #22	CGNL1 (ENSOANG00000042911) #24	MYZAP (ENSOANG00000007558) #25	ENSOANG00000044862 ##25	ALDH1A2 (ENSOANG00000047195) #26	AQP9 (ENSOANG00000041403) #28	LIPC (ENSOANG00000048492) #29	ADAM10 (ENSOANG00000009151) #30	ENSOANG00000038536 #31	SLTM (ENSOANG00000012311) #32	RNF111 (ENSOANG00000012312) #33	CCNB2 (ENSOANG00000012313) #34	MYO1E (ENSOANG00000031114) #35	FAM81A (ENSOANG00000009485)	ENSOANG00000038164	THSD4 (ENSOANG00000039575)
Sauria	ANCESTRAL SPECIES	10	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Aves	ANCESTRAL SPECIES	14	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Great tit	MODERN SPECIES	1	ONECUT1 (ENSPMJG00000018485)	WDR72 (ENSPMJG00000018481)	UNC13C (ENSPMJG00000018480)	RSL24D1 (ENSPMJG00000018477) #7	RAB27A (ENSPMJG00000018476) #8	PIGB (ENSPMJG00000018475) #10	CCPG1 (ENSPMJG00000018474) #9	DNAAF4 (ENSPMJG00000018473) #12	PYGO1 (ENSPMJG00000018471) #14	PRTG (ENSPMJG00000018469) #15	NEDD4 (ENSPMJG00000018468) #16	RFX7 (ENSPMJG00000018467) #18	TEX9 (ENSPMJG00000018466) #19	MNS1 (ENSPMJG00000018465) #20	ZNF280D (ENSPMJG00000018464) #21	TCF12 (ENSPMJG00000018462) #22	CGNL1 (ENSPMJG00000018460) #24	MYZAP (ENSPMJG00000018458) #25	POLR2M (ENSPMJG00000018457) ##25	ALDH1A2 (ENSPMJG00000016819) #26	AQP9 (ENSPMJG00000016818) #28	LIPC (ENSPMJG00000016726) #29	ADAM10 (ENSPMJG00000016725) #30	MINDY2 (ENSPMJG00000016724) #31	SLTM (ENSPMJG00000016582) #32	RNF111 (ENSPMJG00000016570) #33	CCNB2 (ENSPMJG00000016564) #34	MYO1E (ENSPMJG00000015983) #35	FAM81A (ENSPMJG00000015957)	CHRFAM7A (ENSPMJG00000015956)	THSD4 (ENSPMJG00000015955)
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Flycatcher	MODERN SPECIES	1	WDR72 (ENSFALG00000011944)	UNC13C (ENSFALG00000011972)	RSL24D1 (ENSFALG00000012001) #7	RAB27A (ENSFALG00000026250) #8	PIGB (ENSFALG00000012011) #10	CCPG1 (ENSFALG00000012036) #9	DNAAF4 (ENSFALG00000012048) #12	PYGO1 (ENSFALG00000012052) #14	PRTG (ENSFALG00000012060) #15	NEDD4 (ENSFALG00000012079) #16	ENSFALG00000025558 #18	ENSFALG00000025884 #18	TEX9 (ENSFALG00000025263) #19	MNS1 (ENSFALG00000012101) #20	ZNF280D (ENSFALG00000012113) #21	TCF12 (ENSFALG00000012146) #22	CGNL1 (ENSFALG00000012171) #24	MYZAP (ENSFALG00000028894) #25	POLR2M (ENSFALG00000024129) ##25	ALDH1A2 (ENSFALG00000012199) #26	AQP9 (ENSFALG00000024121) #28	LIPC (ENSFALG00000012245) #29	ADAM10 (ENSFALG00000012254) #30	MINDY2 (ENSFALG00000012269) #31	SLTM (ENSFALG00000012285) #32	RNF111 (ENSFALG00000012315) #33	CCNB2 (ENSFALG00000012342) #34	MYO1E (ENSFALG00000012355) #35	FAM81A (ENSFALG00000027686)	ENSFALG00000026917	THSD4 (ENSFALG00000012368)
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Zebra finch	MODERN SPECIES	1	ATOSA (ENSTGUG00000006642)	ONECUT1 (ENSTGUG00000006638)	WDR72 (ENSTGUG00000006614)	UNC13C (ENSTGUG00000006535)	RSL24D1 (ENSTGUG00000019056) #7	RAB27A (ENSTGUG00000023269) #8	PIGB (ENSTGUG00000006499) #10	CCPG1 (ENSTGUG00000006492) #9	DNAAF4 (ENSTGUG00000006467) #12	PYGO1 (ENSTGUG00000027625) #14	NEDD4 (ENSTGUG00000006360) #16	RFX7 (ENSTGUG00000025950) #18	TEX9 (ENSTGUG00000006348) #19	MNS1 (ENSTGUG00000006330) #20	ZNF280D (ENSTGUG00000006310) #21	TCF12 (ENSTGUG00000006270) #22	CGNL1 (ENSTGUG00000006242) #24	MYZAP (ENSTGUG00000006225) #25	POLR2M (ENSTGUG00000023181) ##25	ALDH1A2 (ENSTGUG00000006178) #26	AQP9 (ENSTGUG00000006153) #28	LIPC (ENSTGUG00000006120) #29	ADAM10 (ENSTGUG00000006081) #30	MINDY2 (ENSTGUG00000006043) #31	SLTM (ENSTGUG00000006017) #32	RNF111 (ENSTGUG00000005994) #33	CCNB2 (ENSTGUG00000005982) #34	MYO1E (ENSTGUG00000005894) #35	FAM81A (ENSTGUG00000005890)	ENSTGUG00000005850	THSD4 (ENSTGUG00000005809)
Common canary	MODERN SPECIES	12	ENSSCAG00000000665	UNC13C (ENSSCAG00000000605)	RSL24D1 (ENSSCAG00000000580) #7	RAB27A (ENSSCAG00000000573) #8	PIGB (ENSSCAG00000000567) #10	CCPG1 (ENSSCAG00000000559) #9	DNAAF4 (ENSSCAG00000000540) #12	PYGO1 (ENSSCAG00000000533) #14	PRTG (ENSSCAG00000000517) #15	NEDD4 (ENSSCAG00000000490) #16	RFX7 (ENSSCAG00000000475) #18	TEX9 (ENSSCAG00000000461) #19	MNS1 (ENSSCAG00000000435) #20	ENSSCAG00000000416	ZNF280D (ENSSCAG00000000400) #21	TCF12 (ENSSCAG00000000350) #22	CGNL1 (ENSSCAG00000000325) #24	MYZAP (ENSSCAG00000000309) #25	POLR2M (ENSSCAG00000000300) ##25	ALDH1A2 (ENSSCAG00000000270) #26	AQP9 (ENSSCAG00000000247) #28	LIPC (ENSSCAG00000000234) #29	ADAM10 (ENSSCAG00000000209) #30	MINDY2 (ENSSCAG00000000187) #31	SLTM (ENSSCAG00000000153) #32	RNF111 (ENSSCAG00000016558) #33	CCNB2 (ENSSCAG00000016552) #34	MYO1E (ENSSCAG00000016544) #35	FAM81A (ENSSCAG00000016543)	ENSSCAG00000016541	THSD4 (ENSSCAG00000016540)
Medium ground finch	MODERN SPECIES	16	ONECUT1 (ENSGFOG00000009825)	WDR72 (ENSGFOG00000009836)	UNC13C (ENSGFOG00000009982)	ENSGFOG00000011499	RAB27A (ENSGFOG00000011507) #8	PIGB (ENSGFOG00000011526) #10	CCPG1 (ENSGFOG00000011556) #9	DNAAF4 (ENSGFOG00000011562) #12	PYGO1 (ENSGFOG00000011567) #14	PRTG (ENSGFOG00000011574) #15	NEDD4 (ENSGFOG00000011597) #16	RFX7 (ENSGFOG00000011617) #18	TEX9 (ENSGFOG00000011623) #19	MNS1 (ENSGFOG00000011632) #20	ZNF280D (ENSGFOG00000011637) #21	TCF12 (ENSGFOG00000011648) #22	CGNL1 (ENSGFOG00000011668) #24	MYZAP (ENSGFOG00000011676) #25	POLR2M (ENSGFOG00000011689) ##25	ALDH1A2 (ENSGFOG00000011695) #26	AQP9 (ENSGFOG00000011700) #28	LIPC (ENSGFOG00000011709) #29	ADAM10 (ENSGFOG00000011720) #30	MINDY2 (ENSGFOG00000011738) #31	SLTM (ENSGFOG00000011769) #32	RNF111 (ENSGFOG00000011985) #33	CCNB2 (ENSGFOG00000011997) #34	MYO1E (ENSGFOG00000012007) #35	FAM81A (ENSGFOG00000012019)	ENSGFOG00000012024	THSD4 (ENSGFOG00000012032)
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Kakapo	MODERN SPECIES	1	WDR72 (ENSSHBG00005020062)	UNC13C (ENSSHBG00005020067)	RSL24D1 (ENSSHBG00005020069) #7	RAB27A (ENSSHBG00005020074) #8	PIGB (ENSSHBG00005020077) #10	CCPG1 (ENSSHBG00005020079) #9	ENSSHBG00005020082	DNAAF4 (ENSSHBG00005020083) #12	PYGO1 (ENSSHBG00005020087) #14	PRTG (ENSSHBG00005020090) #15	NEDD4 (ENSSHBG00005020102) #16	RFX7 (ENSSHBG00005020120) #18	TEX9 (ENSSHBG00005020129) #19	MNS1 (ENSSHBG00005020137) #20	ZNF280D (ENSSHBG00005020145) #21	TCF12 (ENSSHBG00005020169) #22	CGNL1 (ENSSHBG00005020183) #24	MYZAP (ENSSHBG00005020198) #25	POLR2M (ENSSHBG00005020207) ##25	ALDH1A2 (ENSSHBG00005020211) #26	AQP9 (ENSSHBG00005020214) #28	LIPC (ENSSHBG00005020219) #29	ADAM10 (ENSSHBG00005020223) #30	MINDY2 (ENSSHBG00005020225) #31	SLTM (ENSSHBG00005020230) #32	RNF111 (ENSSHBG00005020234) #33	CCNB2 (ENSSHBG00005020237) #34	MYO1E (ENSSHBG00005020280) #35	FAM81A (ENSSHBG00005020350)	ENSSHBG00005020354	THSD4 (ENSSHBG00005020365)
Golden eagle	MODERN SPECIES	21	WDR72 (ENSACCG00020006564)	ENSACCG00020006537	RSL24D1 (ENSACCG00020006521) #7	RAB27A (ENSACCG00020006510) #8	PIGB (ENSACCG00020006496) #10	CCPG1 (ENSACCG00020006460) #9	PIERCE2 (ENSACCG00020006437) #11	DNAAF4 (ENSACCG00020006423) #12	PYGO1 (ENSACCG00020006412) #14	PRTG (ENSACCG00020006392) #15	NEDD4 (ENSACCG00020006105) #16	RFX7 (ENSACCG00020005717) #18	TEX9 (ENSACCG00020005705) #19	MNS1 (ENSACCG00020005685) #20	ZNF280D (ENSACCG00020005610) #21	TCF12 (ENSACCG00020005493) #22	CGNL1 (ENSACCG00020005435) #24	MYZAP (ENSACCG00020005410) #25	POLR2M (ENSACCG00020005396) ##25	ALDH1A2 (ENSACCG00020005373) #26	AQP9 (ENSACCG00020005336) #28	LIPC (ENSACCG00020005327) #29	ADAM10 (ENSACCG00020005313) #30	MINDY2 (ENSACCG00020005299) #31	SLTM (ENSACCG00020005275) #32	RNF111 (ENSACCG00020005250) #33	CCNB2 (ENSACCG00020005235) #34	MYO1E (ENSACCG00020005196) #35	FAM81A (ENSACCG00020005161)	ENSACCG00020005149	THSD4 (ENSACCG00020005122)
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Anatidae	ANCESTRAL SPECIES	23	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889.b.b #21	ENSGT00940000175332	ENSGT00940000158889.b.a #21	ENSGT00940000158889.a #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000157011
Duck	DUPLICATION
Duck	MODERN SPECIES	2	RAB27A (ENSAPLG00000002447) #8	ENSAPLG00000018832	CCPG1 (ENSAPLG00000002976) #9	DNAAF4 (ENSAPLG00000003228) #12	PYGO1 (ENSAPLG00000027137) #14	PRTG (ENSAPLG00000003723) #15	NEDD4 (ENSAPLG00000004254) #16	ENSAPLG00000030615 #18	ENSAPLG00000023268 #18	ENSAPLG00000022154	TEX9 (ENSAPLG00000030066) #19	MNS1 (ENSAPLG00000006558) #20	ENSAPLG00000021149	ENSAPLG00000006903 #21	ENSAPLG00000025642 #21	ENSAPLG00000024067 #22	ENSAPLG00000007225 #22	CGNL1 (ENSAPLG00000007650) #24	MYZAP (ENSAPLG00000008051) #25	ALDH1A2 (ENSAPLG00000008541) #26	AQP9 (ENSAPLG00000010168) #28	LIPC (ENSAPLG00000014018) #29	ADAM10 (ENSAPLG00000013495) #30	MINDY2 (ENSAPLG00000013166) #31	SLTM (ENSAPLG00000013025) #32	RNF111 (ENSAPLG00000012549) #33	CCNB2 (ENSAPLG00000011947) #34	MYO1E (ENSAPLG00000010820) #35	FAM81A (ENSAPLG00000010722)	ENSAPLG00000010434	THSD4 (ENSAPLG00000010423)
Duck	MODERN SPECIES	2	ENSAPLG00000018832	CCPG1 (ENSAPLG00000002976) #9	DNAAF4 (ENSAPLG00000003228) #12	PYGO1 (ENSAPLG00000027137) #14	PRTG (ENSAPLG00000003723) #15	NEDD4 (ENSAPLG00000004254) #16	ENSAPLG00000030615 #18	ENSAPLG00000023268 #18	ENSAPLG00000022154	TEX9 (ENSAPLG00000030066) #19	MNS1 (ENSAPLG00000006558) #20	ENSAPLG00000021149	ENSAPLG00000006903 #21	ENSAPLG00000025642 #21	ENSAPLG00000024067 #22	ENSAPLG00000007225 #22	CGNL1 (ENSAPLG00000007650) #24	MYZAP (ENSAPLG00000008051) #25	ALDH1A2 (ENSAPLG00000008541) #26	AQP9 (ENSAPLG00000010168) #28	LIPC (ENSAPLG00000014018) #29	ADAM10 (ENSAPLG00000013495) #30	MINDY2 (ENSAPLG00000013166) #31	SLTM (ENSAPLG00000013025) #32	RNF111 (ENSAPLG00000012549) #33	CCNB2 (ENSAPLG00000011947) #34	MYO1E (ENSAPLG00000010820) #35	FAM81A (ENSAPLG00000010722)	ENSAPLG00000010434	THSD4 (ENSAPLG00000010423)	LRRC49 (ENSAPLG00000009920)
Pink-footed goose	MODERN SPECIES	21	WDR72 (ENSABRG00000021450)	UNC13C (ENSABRG00000020364)	RSL24D1 (ENSABRG00000020189) #7	RAB27A (ENSABRG00000020187) #8	PIGB (ENSABRG00000020176) #10	CCPG1 (ENSABRG00000020166) #9	PIERCE2 (ENSABRG00000020164) #11	DNAAF4 (ENSABRG00000020158) #12	PYGO1 (ENSABRG00000020155) #14	PRTG (ENSABRG00000020122) #15	NEDD4 (ENSABRG00000020096) #16	RFX7 (ENSABRG00000020057) #18	ENSABRG00000020051	MNS1 (ENSABRG00000020045) #20	ENSABRG00000019932 #21	TCF12 (ENSABRG00000019704) #22	CGNL1 (ENSABRG00000019633) #24	MYZAP (ENSABRG00000019604) #25	ALDH1A2 (ENSABRG00000017236) #26	AQP9 (ENSABRG00000016918) #28	LIPC (ENSABRG00000016671) #29	ADAM10 (ENSABRG00000016551) #30	MINDY2 (ENSABRG00000016495) #31	SLTM (ENSABRG00000016347) #32	RNF111 (ENSABRG00000016214) #33	CCNB2 (ENSABRG00000016184) #34	MYO1E (ENSABRG00000015343) #35	FAM81A (ENSABRG00000015310)	ENSABRG00000015306	THSD4 (ENSABRG00000015299)	LRRC49 (ENSABRG00000015293)
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461.s #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00950000183103.c	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461.s #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Turkey	DUPLICATION
Turkey	MODERN SPECIES	3	ENSMGAG00000005132	ENSMGAG00000005177	ENSMGAG00000005190 #35	ENSMGAG00000016492 #35	CCNB2 (ENSMGAG00000005262) #34	ENSMGAG00000005286 #33	ENSMGAG00000005313 #32	ENSMGAG00000005379 #30	ENSMGAG00000005444 #29	ENSMGAG00000019744	ENSMGAG00000005501 #28	ENSMGAG00000005523 #26	ENSMGAG00000005643 ##25	ENSMGAG00000005658 #25	ENSMGAG00000005589 #24	ENSMGAG00000005667 #22	ENSMGAG00000016556 #22	ENSMGAG00000017930	ENSMGAG00000005701 #21	ENSMGAG00000019860 #21	ENSMGAG00000005768 #19	ENSMGAG00000005754 #20	ENSMGAG00000005745 #18	ENSMGAG00000005780 #16	ENSMGAG00000020708 #16	ENSMGAG00000021031 #15	ENSMGAG00000005943 #14	ENSMGAG00000017699	DNAAF4 (ENSMGAG00000005949) #12	ENSMGAG00000005993 #10	ENSMGAG00000005965 #9
Turkey	MODERN SPECIES	3	ENSMGAG00000005177	ENSMGAG00000005190 #35	ENSMGAG00000016492 #35	CCNB2 (ENSMGAG00000005262) #34	ENSMGAG00000005286 #33	ENSMGAG00000005313 #32	ENSMGAG00000005379 #30	ENSMGAG00000005444 #29	ENSMGAG00000019744	ENSMGAG00000005501 #28	ENSMGAG00000005523 #26	ENSMGAG00000005643 ##25	ENSMGAG00000005658 #25	ENSMGAG00000005589 #24	ENSMGAG00000005667 #22	ENSMGAG00000016556 #22	ENSMGAG00000017930	ENSMGAG00000005701 #21	ENSMGAG00000019860 #21	ENSMGAG00000005768 #19	ENSMGAG00000005754 #20	ENSMGAG00000005745 #18	ENSMGAG00000005780 #16	ENSMGAG00000020708 #16	ENSMGAG00000021031 #15	ENSMGAG00000005943 #14	ENSMGAG00000017699	DNAAF4 (ENSMGAG00000005949) #12	ENSMGAG00000005993 #10	ENSMGAG00000005965 #9	ENSMGAG00000006007 #8
Chicken	MODERN SPECIES	1	UNC13C (ENSGALG00010021779)	RSL24D1 (ENSGALG00010021745) #7	RAB27A (ENSGALG00010021713) #8	PIGBOS1 (ENSGALG00010021735)	PIGB (ENSGALG00010021691) #10	CCPG1 (ENSGALG00010021686) #9	DNAAF4 (ENSGALG00010021678) #12	PYGO1 (ENSGALG00010021668) #14	PRTG (ENSGALG00010022482) #15	NEDD4 (ENSGALG00010022466) #16	RFX7 (ENSGALG00010023234) #18	ENSGALG00010023226 #18	TEX9 (ENSGALG00010023219) #19	MNS1 (ENSGALG00010023207) #20	ZNF280D (ENSGALG00010023201) #21	TCF12 (ENSGALG00010023170) #22	CGNL1 (ENSGALG00010023126) #24	MYZAP (ENSGALG00010023113) #25	POLR2M (ENSGALG00010023071) ##25	ALDH1A2 (ENSGALG00010023060) #26	AQP9 (ENSGALG00010023054) #28	LIPC (ENSGALG00010022994) #29	ADAM10 (ENSGALG00010025336) #30	FAM63B (ENSGALG00010022976) #31	SLTM (ENSGALG00010022957) #32	RNF111 (ENSGALG00010022928) #33	CCNB1 (ENSGALG00010022881) #34	FAM81A (ENSGALG00010022863)	CHRNA7 (ENSGALG00010022834)	MYO1E (ENSGALG00010022809) #35	THSD4 (ENSGALG00010022759)
Japanese quail	MODERN SPECIES	1	UNC13C (ENSCJPG00005016257)	RSL24D1 (ENSCJPG00005016253) #7	RAB27A (ENSCJPG00005016252) #8	PIGB (ENSCJPG00005016251) #10	ENSCJPG00005016250	CCPG1 (ENSCJPG00005016249) #9	ENSCJPG00005016248	PYGO1 (ENSCJPG00005016247) #14	PRTG (ENSCJPG00005016246) #15	NEDD4 (ENSCJPG00005016242) #16	RFX7 (ENSCJPG00005016241) #18	TEX9 (ENSCJPG00005016240) #19	MNS1 (ENSCJPG00005016239) #20	ENSCJPG00005016238	ZNF280D (ENSCJPG00005016237) #21	TCF12 (ENSCJPG00005016236) #22	CGNL1 (ENSCJPG00005016235) #24	MYZAP (ENSCJPG00005016234) #25	POLR2M (ENSCJPG00005016233) ##25	ALDH1A2 (ENSCJPG00005012931) #26	AQP9 (ENSCJPG00005012926) #28	LIPC (ENSCJPG00005012746) #29	ADAM10 (ENSCJPG00005012732) #30	MINDY2 (ENSCJPG00005012730) #31	SLTM (ENSCJPG00005012727) #32	RNF111 (ENSCJPG00005012724) #33	CCNB2 (ENSCJPG00005012721) #34	MYO1E (ENSCJPG00005012713) #35	FAM81A (ENSCJPG00005012711)	CHRNA7 (ENSCJPG00005012710)	THSD4 (ENSCJPG00005012708)
African ostrich	MODERN SPECIES	834	WDR72 (ENSSCUG00000014358)	UNC13C (ENSSCUG00000014361)	RSL24D1 (ENSSCUG00000014366) #7	RAB27A (ENSSCUG00000014367) #8	PIGB (ENSSCUG00000014369) #10	CCPG1 (ENSSCUG00000014371) #9	DNAAF4 (ENSSCUG00000014375) #12	PIERCE2 (ENSSCUG00000014377) #11	PYGO1 (ENSSCUG00000014379) #14	PRTG (ENSSCUG00000014384) #15	NEDD4 (ENSSCUG00000014393) #16	RFX7 (ENSSCUG00000014399) #18	TEX9 (ENSSCUG00000014401) #19	MNS1 (ENSSCUG00000014403) #20	ZNF280D (ENSSCUG00000014412) #21	TCF12 (ENSSCUG00000014425) #22	CGNL1 (ENSSCUG00000014437) #24	MYZAP (ENSSCUG00000014440) #25	POLR2M (ENSSCUG00000014446) ##25	ALDH1A2 (ENSSCUG00000014587) #26	AQP9 (ENSSCUG00000014737) #28	LIPC (ENSSCUG00000014743) #29	ADAM10 (ENSSCUG00000014747) #30	MINDY2 (ENSSCUG00000014754) #31	SLTM (ENSSCUG00000014764) #32	RNF111 (ENSSCUG00000014769) #33	CCNB2 (ENSSCUG00000014772) #34	MYO1E (ENSSCUG00000014780) #35	FAM81A (ENSSCUG00000014814)	ENSSCUG00000014822	ENSSCUG00000014824
Australian saltwater crocodile	MODERN SPECIES	31	RSL24D1 (ENSCPRG00005011774) #7	RAB27A (ENSCPRG00005011769) #8	PIGB (ENSCPRG00005011765) #10	CCPG1 (ENSCPRG00005011744) #9	ENSCPRG00005011735 #11	DNAAF4 (ENSCPRG00005011732) #12	PYGO1 (ENSCPRG00005011729) #14	PRTG (ENSCPRG00005011722) #15	NEDD4 (ENSCPRG00005011696) #16	RFX7 (ENSCPRG00005011681) #18	TEX9 (ENSCPRG00005011655) #19	MNS1 (ENSCPRG00005011651) #20	ENSCPRG00005011648	ENSCPRG00005011643 #21	ENSCPRG00005011636 #21	TCF12 (ENSCPRG00005011593) #22	CGNL1 (ENSCPRG00005011575) #24	MYZAP (ENSCPRG00005011480) #25	POLR2M (ENSCPRG00005011467) ##25	ALDH1A2 (ENSCPRG00005009841) #26	ENSCPRG00005009661	ENSCPRG00005009644	ENSCPRG00005009638	ENSCPRG00005009570	ENSCPRG00005009560	ENSCPRG00005009557	ENSCPRG00005009555	ENSCPRG00005009538	ENSCPRG00005009533	ENSCPRG00005009529	LIPC (ENSCPRG00005009476) #29
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Chinese turtle	MODERN SPECIES	222							PYGO1 (ENSPSIG00000006169) #14	PRTG (ENSPSIG00000017154) #15	NEDD4 (ENSPSIG00000015343) #16	ENSPSIG00000014872	RFX7 (ENSPSIG00000014731) #18	ENSPSIG00000014667	TEX9 (ENSPSIG00000014620) #19	MNS1 (ENSPSIG00000014083) #20	ZNF280D (ENSPSIG00000013619) #21	TCF12 (ENSPSIG00000011880) #22	CGNL1 (ENSPSIG00000009354) #24	MYZAP (ENSPSIG00000008395) #25	ALDH1A2 (ENSPSIG00000017126) #26	AQP9 (ENSPSIG00000016630) #28	LIPC (ENSPSIG00000014171) #29	ADAM10 (ENSPSIG00000010695) #30	MINDY2 (ENSPSIG00000009432) #31	SLTM (ENSPSIG00000005489) #32	RNF111 (ENSPSIG00000018092) #33
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	27	WDR72 (ENSTMTG00000022964)	UNC13C (ENSTMTG00000022955)	RSL24D1 (ENSTMTG00000022948) #7	RAB27A (ENSTMTG00000022945) #8	PIGB (ENSTMTG00000022938) #10	CCPG1 (ENSTMTG00000022929) #9	PIERCE2 (ENSTMTG00000022925) #11	DNAAF4 (ENSTMTG00000022920) #12	PYGO1 (ENSTMTG00000022919) #14	PRTG (ENSTMTG00000022916) #15	NEDD4 (ENSTMTG00000022909) #16	RFX7 (ENSTMTG00000022907) #18	TEX9 (ENSTMTG00000022905) #19	MNS1 (ENSTMTG00000022902) #20	ZNF280D (ENSTMTG00000022895) #21	ENSTMTG00000022894 #22	ENSTMTG00000022893 #22	CGNL1 (ENSTMTG00000022891) #24	MYZAP (ENSTMTG00000022878) #25	POLR2M (ENSTMTG00000022874) ##25	ALDH1A2 (ENSTMTG00000022845) #26	AQP9 (ENSTMTG00000022831) #28	LIPC (ENSTMTG00000022828) #29	ADAM10 (ENSTMTG00000022823) #30	MINDY2 (ENSTMTG00000022818) #31	SLTM (ENSTMTG00000022776) #32	RNF111 (ENSTMTG00000022740) #33	CCNB2 (ENSTMTG00000022735) #34	MYO1E (ENSTMTG00000022631) #35	ENSTMTG00000022596	THSD4 (ENSTMTG00000022590)
Three-toed box turtle	MODERN SPECIES	27	UNC13C (ENSTMTG00000022955)	RSL24D1 (ENSTMTG00000022948) #7	RAB27A (ENSTMTG00000022945) #8	PIGB (ENSTMTG00000022938) #10	CCPG1 (ENSTMTG00000022929) #9	PIERCE2 (ENSTMTG00000022925) #11	DNAAF4 (ENSTMTG00000022920) #12	PYGO1 (ENSTMTG00000022919) #14	PRTG (ENSTMTG00000022916) #15	NEDD4 (ENSTMTG00000022909) #16	RFX7 (ENSTMTG00000022907) #18	TEX9 (ENSTMTG00000022905) #19	MNS1 (ENSTMTG00000022902) #20	ZNF280D (ENSTMTG00000022895) #21	ENSTMTG00000022894 #22	ENSTMTG00000022893 #22	CGNL1 (ENSTMTG00000022891) #24	MYZAP (ENSTMTG00000022878) #25	POLR2M (ENSTMTG00000022874) ##25	ALDH1A2 (ENSTMTG00000022845) #26	AQP9 (ENSTMTG00000022831) #28	LIPC (ENSTMTG00000022828) #29	ADAM10 (ENSTMTG00000022823) #30	MINDY2 (ENSTMTG00000022818) #31	SLTM (ENSTMTG00000022776) #32	RNF111 (ENSTMTG00000022740) #33	CCNB2 (ENSTMTG00000022735) #34	MYO1E (ENSTMTG00000022631) #35	ENSTMTG00000022596	THSD4 (ENSTMTG00000022590)	LRRC49 (ENSTMTG00000022586)
painted turtle	MODERN SPECIES	2410	RSL24D1 (ENSCPBG00000004100) #7	RAB27A (ENSCPBG00000004115) #8	PIGB (ENSCPBG00000004140) #10	CCPG1 (ENSCPBG00000004161) #9	ENSCPBG00000004174	DNAAF4 (ENSCPBG00000004176) #12	PYGO1 (ENSCPBG00000004182) #14	PRTG (ENSCPBG00000004188) #15	NEDD4 (ENSCPBG00000004215) #16	RFX7 (ENSCPBG00000004255) #18	TEX9 (ENSCPBG00000004273) #19	MNS1 (ENSCPBG00000004298) #20	ENSCPBG00000004327	ENSCPBG00000004363 #21	ENSCPBG00000004803 #21	TCF12 (ENSCPBG00000004845) #22	CGNL1 (ENSCPBG00000004924) #24	MYZAP (ENSCPBG00000004950) #25	POLR2M (ENSCPBG00000004965) ##25	ALDH1A2 (ENSCPBG00000004982) #26	AQP9 (ENSCPBG00000004992) #28	ENSCPBG00000005016 #30	MINDY2 (ENSCPBG00000005835) #31	SLTM (ENSCPBG00000006045) #32	RNF111 (ENSCPBG00000010682) #33	CCNB2 (ENSCPBG00000010694) #34	MYO1E (ENSCPBG00000010702) #35	FAM81A (ENSCPBG00000010724)	ENSCPBG00000010732	ENSCPBG00000010741	ENSCPBG00000010742
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00910000148328	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a.b #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000154617.B	ENSGT00940000156594
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	924											ENSCABG00000022139	MNS1 (ENSCABG00000022140) #20	ENSCABG00000022145	ENSCABG00000022147 #21	ENSCABG00000022151 #21	ENSCABG00000022153 #22
Abingdon island giant tortoise	MODERN SPECIES	345																TCF12 (ENSCABG00000005881) #22	CGNL1 (ENSCABG00000006002) #24	MYZAP (ENSCABG00000006437) #25	POLR2M (ENSCABG00000006599) ##25	ALDH1A2 (ENSCABG00000006606) #26	AQP9 (ENSCABG00000006634) #28	LIPC (ENSCABG00000006642) #29	ADAM10 (ENSCABG00000006648) #30
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	1	WDR72 (ENSGEVG00005004872)	UNC13C (ENSGEVG00005004984)	RSL24D1 (ENSGEVG00005005092) #7	RAB27A (ENSGEVG00005005130) #8	PIGB (ENSGEVG00005005153) #10	CCPG1 (ENSGEVG00005005193) #9	PIERCE2 (ENSGEVG00005005251) #11	DNAAF4 (ENSGEVG00005005274) #12	PYGO1 (ENSGEVG00005005363) #14	PRTG (ENSGEVG00005005383) #15	NEDD4 (ENSGEVG00005005456) #16	RFX7 (ENSGEVG00005005566) #18	ENSGEVG00005005592 #19	MNS1 (ENSGEVG00005005603) #20	ZNF280D (ENSGEVG00005005673) #21	ENSGEVG00005005841 #22	TCF12 (ENSGEVG00005005908) #22	CGNL1 (ENSGEVG00005006058) #24	MYZAP (ENSGEVG00005006307) #25	POLR2M (ENSGEVG00005006362) ##25	ALDH1A2 (ENSGEVG00005006412) #26	AQP9 (ENSGEVG00005006552) #28	LIPC (ENSGEVG00005006594) #29	ADAM10 (ENSGEVG00005006648) #30	MINDY2 (ENSGEVG00005006676) #31	SLTM (ENSGEVG00005006854) #32	RNF111 (ENSGEVG00005007444) #33	CCNB2 (ENSGEVG00005007484) #34	MYO1E (ENSGEVG00005007601) #35	FAM81A (ENSGEVG00005007916)	ENSGEVG00005007968
Goode s thornscrub tortoise	MODERN SPECIES	1	UNC13C (ENSGEVG00005004984)	RSL24D1 (ENSGEVG00005005092) #7	RAB27A (ENSGEVG00005005130) #8	PIGB (ENSGEVG00005005153) #10	CCPG1 (ENSGEVG00005005193) #9	PIERCE2 (ENSGEVG00005005251) #11	DNAAF4 (ENSGEVG00005005274) #12	PYGO1 (ENSGEVG00005005363) #14	PRTG (ENSGEVG00005005383) #15	NEDD4 (ENSGEVG00005005456) #16	RFX7 (ENSGEVG00005005566) #18	ENSGEVG00005005592 #19	MNS1 (ENSGEVG00005005603) #20	ZNF280D (ENSGEVG00005005673) #21	ENSGEVG00005005841 #22	TCF12 (ENSGEVG00005005908) #22	CGNL1 (ENSGEVG00005006058) #24	MYZAP (ENSGEVG00005006307) #25	POLR2M (ENSGEVG00005006362) ##25	ALDH1A2 (ENSGEVG00005006412) #26	AQP9 (ENSGEVG00005006552) #28	LIPC (ENSGEVG00005006594) #29	ADAM10 (ENSGEVG00005006648) #30	MINDY2 (ENSGEVG00005006676) #31	SLTM (ENSGEVG00005006854) #32	RNF111 (ENSGEVG00005007444) #33	CCNB2 (ENSGEVG00005007484) #34	MYO1E (ENSGEVG00005007601) #35	FAM81A (ENSGEVG00005007916)	ENSGEVG00005007968	ENSGEVG00005007998
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b
Episquamata	ANCESTRAL SPECIES	9	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905.ab #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737
Toxicofera	ANCESTRAL SPECIES	15	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905.ab #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573.k #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b	ENSGT00390000003748
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	14	ONECUT1 (ENSNNAG00000014594)	WDR72 (ENSNNAG00000014607)	UNC13C (ENSNNAG00000014666)	RSL24D1 (ENSNNAG00000014732) #7	RAB27A (ENSNNAG00000014760) #8	PIGB (ENSNNAG00000014791) #10	CCPG1 (ENSNNAG00000014854) #9	DNAAF4 (ENSNNAG00000014815) #12	PYGO1 (ENSNNAG00000014935) #14	ENSNNAG00000014990 #15	TEX9 (ENSNNAG00000015052) #19	MNS1 (ENSNNAG00000015080) #20	ENSNNAG00000015088	ZNF280D (ENSNNAG00000015092) #21	ENSNNAG00000015120 #22	ENSNNAG00000015131 #22	CGNL1 (ENSNNAG00000015168) #24	MYZAP (ENSNNAG00000015353) #25	ALDH1A2 (ENSNNAG00000015465) #26	AQP9 (ENSNNAG00000015484) #28	LIPC (ENSNNAG00000015496) #29	ADAM10 (ENSNNAG00000015510) #30	MINDY2 (ENSNNAG00000015542) #31	SLTM (ENSNNAG00000015551) #32	RNF111 (ENSNNAG00000015595) #33	FAM81A (ENSNNAG00000015620)	MYO1E (ENSNNAG00000015790) #35	TBC1D2B (ENSNNAG00000017352)	DAPK2 (ENSNNAG00000017373)	HERC1 (ENSNNAG00000017461)	FBXL22 (ENSNNAG00000017821)
Indian cobra	MODERN SPECIES	14		ONECUT1 (ENSNNAG00000014594)	WDR72 (ENSNNAG00000014607)	UNC13C (ENSNNAG00000014666)	RSL24D1 (ENSNNAG00000014732) #7	RAB27A (ENSNNAG00000014760) #8	PIGB (ENSNNAG00000014791) #10	CCPG1 (ENSNNAG00000014854) #9	DNAAF4 (ENSNNAG00000014815) #12	PYGO1 (ENSNNAG00000014935) #14	ENSNNAG00000014990 #15	TEX9 (ENSNNAG00000015052) #19	MNS1 (ENSNNAG00000015080) #20	ENSNNAG00000015088	ZNF280D (ENSNNAG00000015092) #21	ENSNNAG00000015120 #22	ENSNNAG00000015131 #22	CGNL1 (ENSNNAG00000015168) #24	MYZAP (ENSNNAG00000015353) #25	ALDH1A2 (ENSNNAG00000015465) #26	AQP9 (ENSNNAG00000015484) #28	LIPC (ENSNNAG00000015496) #29	ADAM10 (ENSNNAG00000015510) #30	MINDY2 (ENSNNAG00000015542) #31	SLTM (ENSNNAG00000015551) #32	RNF111 (ENSNNAG00000015595) #33	FAM81A (ENSNNAG00000015620)	MYO1E (ENSNNAG00000015790) #35	TBC1D2B (ENSNNAG00000017352)	DAPK2 (ENSNNAG00000017373)	HERC1 (ENSNNAG00000017461)
Elapidae_a	ANCESTRAL SPECIES	17	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573.k #32	ENSGT00940000156573.l #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b
Acanthophiinae	ANCESTRAL SPECIES	17	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000175332	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573.k #32	ENSGT00940000156573.l #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	168	WDR72 (ENSNSUG00000013342)	UNC13C (ENSNSUG00000013400)	RSL24D1 (ENSNSUG00000013401) #7	RAB27A (ENSNSUG00000013402) #8	PIGB (ENSNSUG00000013403) #10	CCPG1 (ENSNSUG00000013404) #9	ENSNSUG00000013405	DNAAF4 (ENSNSUG00000013406) #12	PYGO1 (ENSNSUG00000013407) #14	PRTG (ENSNSUG00000013408) #15	RFX7 (ENSNSUG00000013409) #18	ENSNSUG00000013410 #19	MNS1 (ENSNSUG00000013411) #20	ENSNSUG00000013412	ZNF280D (ENSNSUG00000013413) #21	ENSNSUG00000013448 #22	ENSNSUG00000013449 #22	ENSNSUG00000013450 #22	CGNL1 (ENSNSUG00000013451) #24	MYZAP (ENSNSUG00000013455) #25	ALDH1A2 (ENSNSUG00000013568) #26	AQP9 (ENSNSUG00000014539) #28	LIPC (ENSNSUG00000014540) #29	ADAM10 (ENSNSUG00000014541) #30	MINDY2 (ENSNSUG00000014542) #31	ENSNSUG00000014543 #32	ENSNSUG00000014544 #32	RNF111 (ENSNSUG00000014545) #33	MYO1E (ENSNSUG00000014553) #35	FAM81A (ENSNSUG00000015051)	TBC1D2B (ENSNSUG00000015053)
Mainland tiger snake	MODERN SPECIES	168	RSL24D1 (ENSNSUG00000013401) #7	RAB27A (ENSNSUG00000013402) #8	PIGB (ENSNSUG00000013403) #10	CCPG1 (ENSNSUG00000013404) #9	ENSNSUG00000013405	DNAAF4 (ENSNSUG00000013406) #12	PYGO1 (ENSNSUG00000013407) #14	PRTG (ENSNSUG00000013408) #15	RFX7 (ENSNSUG00000013409) #18	ENSNSUG00000013410 #19	MNS1 (ENSNSUG00000013411) #20	ENSNSUG00000013412	ZNF280D (ENSNSUG00000013413) #21	ENSNSUG00000013448 #22	ENSNSUG00000013449 #22	ENSNSUG00000013450 #22	CGNL1 (ENSNSUG00000013451) #24	MYZAP (ENSNSUG00000013455) #25	ALDH1A2 (ENSNSUG00000013568) #26	AQP9 (ENSNSUG00000014539) #28	LIPC (ENSNSUG00000014540) #29	ADAM10 (ENSNSUG00000014541) #30	MINDY2 (ENSNSUG00000014542) #31	ENSNSUG00000014543 #32	ENSNSUG00000014544 #32	RNF111 (ENSNSUG00000014545) #33	MYO1E (ENSNSUG00000014553) #35	FAM81A (ENSNSUG00000015051)	TBC1D2B (ENSNSUG00000015053)	DAPK2 (ENSNSUG00000015054)	HERC1 (ENSNSUG00000015055)
Mainland tiger snake	MODERN SPECIES	168	UNC13C (ENSNSUG00000013400)	RSL24D1 (ENSNSUG00000013401) #7	RAB27A (ENSNSUG00000013402) #8	PIGB (ENSNSUG00000013403) #10	CCPG1 (ENSNSUG00000013404) #9	ENSNSUG00000013405	DNAAF4 (ENSNSUG00000013406) #12	PYGO1 (ENSNSUG00000013407) #14	PRTG (ENSNSUG00000013408) #15	RFX7 (ENSNSUG00000013409) #18	ENSNSUG00000013410 #19	MNS1 (ENSNSUG00000013411) #20	ENSNSUG00000013412	ZNF280D (ENSNSUG00000013413) #21	ENSNSUG00000013448 #22	ENSNSUG00000013449 #22	ENSNSUG00000013450 #22	CGNL1 (ENSNSUG00000013451) #24	MYZAP (ENSNSUG00000013455) #25	ALDH1A2 (ENSNSUG00000013568) #26	AQP9 (ENSNSUG00000014539) #28	LIPC (ENSNSUG00000014540) #29	ADAM10 (ENSNSUG00000014541) #30	MINDY2 (ENSNSUG00000014542) #31	ENSNSUG00000014543 #32	ENSNSUG00000014544 #32	RNF111 (ENSNSUG00000014545) #33	MYO1E (ENSNSUG00000014553) #35	FAM81A (ENSNSUG00000015051)	TBC1D2B (ENSNSUG00000015053)	DAPK2 (ENSNSUG00000015054)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	44		ONECUT1 (ENSPTXG00000006996)	WDR72 (ENSPTXG00000006995)	UNC13C (ENSPTXG00000002901)	RSL24D1 (ENSPTXG00000002855) #7	RAB27A (ENSPTXG00000002854) #8	PIGB (ENSPTXG00000002852) #10	CCPG1 (ENSPTXG00000002850) #9	DNAAF4 (ENSPTXG00000002847) #12	PRTG (ENSPTXG00000002842) #15	RFX7 (ENSPTXG00000002837) #18	ENSPTXG00000002836 #19	MNS1 (ENSPTXG00000002834) #20	ZNF280D (ENSPTXG00000002832) #21	ENSPTXG00000002830 #22	ENSPTXG00000017973 #22	CGNL1 (ENSPTXG00000017971) #24	MYZAP (ENSPTXG00000017967) #25	ALDH1A2 (ENSPTXG00000016295) #26	LIPC (ENSPTXG00000016286) #29	ADAM10 (ENSPTXG00000016285) #30	MINDY2 (ENSPTXG00000016284) #31	SLTM (ENSPTXG00000016283) #32	RNF111 (ENSPTXG00000016282) #33	MYO1E (ENSPTXG00000015740) #35	FAM81A (ENSPTXG00000015726)	TBC1D2B (ENSPTXG00000015724)	DAPK2 (ENSPTXG00000015723)	HERC1 (ENSPTXG00000013834)	FBXL22 (ENSPTXG00000013818)	USP3 (ENSPTXG00000012839)
Eastern brown snake	MODERN SPECIES	44			ONECUT1 (ENSPTXG00000006996)	WDR72 (ENSPTXG00000006995)	UNC13C (ENSPTXG00000002901)	RSL24D1 (ENSPTXG00000002855) #7	RAB27A (ENSPTXG00000002854) #8	PIGB (ENSPTXG00000002852) #10	CCPG1 (ENSPTXG00000002850) #9	DNAAF4 (ENSPTXG00000002847) #12	PRTG (ENSPTXG00000002842) #15	RFX7 (ENSPTXG00000002837) #18	ENSPTXG00000002836 #19	MNS1 (ENSPTXG00000002834) #20	ZNF280D (ENSPTXG00000002832) #21	ENSPTXG00000002830 #22	ENSPTXG00000017973 #22	CGNL1 (ENSPTXG00000017971) #24	MYZAP (ENSPTXG00000017967) #25	ALDH1A2 (ENSPTXG00000016295) #26	LIPC (ENSPTXG00000016286) #29	ADAM10 (ENSPTXG00000016285) #30	MINDY2 (ENSPTXG00000016284) #31	SLTM (ENSPTXG00000016283) #32	RNF111 (ENSPTXG00000016282) #33	MYO1E (ENSPTXG00000015740) #35	FAM81A (ENSPTXG00000015726)	TBC1D2B (ENSPTXG00000015724)	DAPK2 (ENSPTXG00000015723)	HERC1 (ENSPTXG00000013834)	FBXL22 (ENSPTXG00000013818)
Blue-lipped sea krait	MODERN SPECIES	3358								ENSLLTG00000016846	DNAAF4 (ENSLLTG00000016842) #12	PYGO1 (ENSLLTG00000016839) #14	PRTG (ENSLLTG00000016830) #15	RFX7 (ENSLLTG00000016827) #18	TEX9 (ENSLLTG00000016826) #19	MNS1 (ENSLLTG00000016824) #20	ZNF280D (ENSLLTG00000016820) #21	TCF12 (ENSLLTG00000016817) #22	CGNL1 (ENSLLTG00000016815) #24	ENSLLTG00000016811 #25
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1184											TEX9 (ENSACAG00000014134) #19	MNS1 (ENSACAG00000014151) #20	ENSACAG00000014184	ENSACAG00000044398 #22	ENSACAG00000041269 #22	ENSACAG00000014277 #22	CGNL1 (ENSACAG00000014517) #24	POLR2M (ENSACAG00000024002) ##25	ALDH1A2 (ENSACAG00000014641) #26	ENSACAG00000041588	LIPC (ENSACAG00000014883) #29	ADAM10 (ENSACAG00000014994) #30	MINDY2 (ENSACAG00000015045) #31	SLTM (ENSACAG00000015120) #32	RNF111 (ENSACAG00000015170) #33	MYO1E (ENSACAG00000015242) #35	FAM81A (ENSACAG00000015330)	ENSACAG00000015337	ENSACAG00000015395
Lizard	MODERN SPECIES	1184													TEX9 (ENSACAG00000014134) #19	MNS1 (ENSACAG00000014151) #20	ENSACAG00000014184	ENSACAG00000044398 #22	ENSACAG00000041269 #22	ENSACAG00000014277 #22	CGNL1 (ENSACAG00000014517) #24	POLR2M (ENSACAG00000024002) ##25	ALDH1A2 (ENSACAG00000014641) #26	ENSACAG00000041588	LIPC (ENSACAG00000014883) #29	ADAM10 (ENSACAG00000014994) #30	MINDY2 (ENSACAG00000015045) #31	SLTM (ENSACAG00000015120) #32	RNF111 (ENSACAG00000015170) #33	MYO1E (ENSACAG00000015242) #35	FAM81A (ENSACAG00000015330)	ENSACAG00000015337	ENSACAG00000015395
Lizard	MODERN SPECIES	1184												TEX9 (ENSACAG00000014134) #19	MNS1 (ENSACAG00000014151) #20	ENSACAG00000014184	ENSACAG00000044398 #22	ENSACAG00000041269 #22	ENSACAG00000014277 #22	CGNL1 (ENSACAG00000014517) #24	POLR2M (ENSACAG00000024002) ##25	ALDH1A2 (ENSACAG00000014641) #26	ENSACAG00000041588	LIPC (ENSACAG00000014883) #29	ADAM10 (ENSACAG00000014994) #30	MINDY2 (ENSACAG00000015045) #31	SLTM (ENSACAG00000015120) #32	RNF111 (ENSACAG00000015170) #33	MYO1E (ENSACAG00000015242) #35	FAM81A (ENSACAG00000015330)	ENSACAG00000015337	ENSACAG00000015395
Laterata	ANCESTRAL SPECIES	33	ENSGT00940000160298	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00970000193985	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905.ab #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000158889 #21	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000157737
Common wall lizard	MODERN SPECIES	5	WDR72 (ENSPMRG00000023547)	UNC13C (ENSPMRG00000023535)	RSL24D1 (ENSPMRG00000023532) #7	RAB27A (ENSPMRG00000023529) #8	PIGB (ENSPMRG00000023526) #10	CCPG1 (ENSPMRG00000023523) #9	ENSPMRG00000023520	DNAAF4 (ENSPMRG00000023517) #12	PYGO1 (ENSPMRG00000023516) #14	PRTG (ENSPMRG00000023506) #15	NEDD4 (ENSPMRG00000023493) #16	RFX7 (ENSPMRG00000023486) #18	TEX9 (ENSPMRG00000023481) #19	MNS1 (ENSPMRG00000023479) #20	ZNF280D (ENSPMRG00000023475) #21	TCF12 (ENSPMRG00000023467) #22	ENSPMRG00000023461 ##25	ENSPMRG00000023457 #26	ENSPMRG00000023456 #26	AQP9 (ENSPMRG00000023453) #28	ENSPMRG00000023449	ENSPMRG00000023445	LIPC (ENSPMRG00000023441) #29	ADAM10 (ENSPMRG00000023435) #30	MINDY2 (ENSPMRG00000023430) #31	SLTM (ENSPMRG00000023425) #32	RNF111 (ENSPMRG00000023421) #33	CCNB2 (ENSPMRG00000023416) #34	MYO1E (ENSPMRG00000023361) #35	FAM81A (ENSPMRG00000023319)	TBC1D2B (ENSPMRG00000023313)
Argentine black and white tegu	MODERN SPECIES	95	WDR72 (ENSSMRG00000007309)	UNC13C (ENSSMRG00000004801)	ENSSMRG00000004782	RAB27A (ENSSMRG00000004781) #8	PIGB (ENSSMRG00000004775) #10	CCPG1 (ENSSMRG00000004769) #9	ENSSMRG00000004763	DNAAF4 (ENSSMRG00000004760) #12	PYGO1 (ENSSMRG00000004758) #14	PRTG (ENSSMRG00000004720) #15	NEDD4 (ENSSMRG00000002035) #16	RFX7 (ENSSMRG00000002021) #18	TEX9 (ENSSMRG00000002009) #19	MNS1 (ENSSMRG00000001999) #20	ZNF280D (ENSSMRG00000001995) #21	TCF12 (ENSSMRG00000001959) #22	CGNL1 (ENSSMRG00000001924) #24	COMMD4 (ENSSMRG00000001915)	NEIL1 (ENSSMRG00000001911)	MAN2C1 (ENSSMRG00000001893)	IREB2 (ENSSMRG00000001882)	HYKK (ENSSMRG00000001874)	PSMA4 (ENSSMRG00000001868)	CHRNA5 (ENSSMRG00000001867)	CHRNA3 (ENSSMRG00000001861)	ENSSMRG00000001856	CHRNB4 (ENSSMRG00000001852)	UBE2Q2 (ENSSMRG00000000898)	FBXO22 (ENSSMRG00000000871)	ENSSMRG00000000845	TMEM266 (ENSSMRG00000000811)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1440													MNS1 (ENSSPUG00000017338) #20	ENSSPUG00000016905 #21	ENSSPUG00000016788 #21	ENSSPUG00000016780 #22	TCF12 (ENSSPUG00000016702) #22	ENSSPUG00000016685	CGNL1 (ENSSPUG00000016667) #24	MYZAP (ENSSPUG00000016651) #25	POLR2M (ENSSPUG00000016640) ##25	ALDH1A2 (ENSSPUG00000016605) #26	AQP9 (ENSSPUG00000016586) #28
tuatara	MODERN SPECIES	1440												MNS1 (ENSSPUG00000017338) #20	ENSSPUG00000016905 #21	ENSSPUG00000016788 #21	ENSSPUG00000016780 #22	TCF12 (ENSSPUG00000016702) #22	ENSSPUG00000016685	CGNL1 (ENSSPUG00000016667) #24	MYZAP (ENSSPUG00000016651) #25	POLR2M (ENSSPUG00000016640) ##25	ALDH1A2 (ENSSPUG00000016605) #26	AQP9 (ENSSPUG00000016586) #28
Anura	ANCESTRAL SPECIES		ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00760000120436	ENSGT00950000183090.A #10	ENSGT00940000160497 #9	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000160582 #28	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000160579 #30	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405.rb.a #34	ENSGT00940000155405.rb.b #34	ENSGT00940000157461 #35	ENSGT00940000154617.B
Frog	MODERN SPECIES	3	rsl24d1 (ENSXETG00000007376) #7	rab27a (ENSXETG00000007375) #8	PIGBOS1 (ENSXETG00000045140)	pigb (ENSXETG00000032008) #10	ccpg1 (ENSXETG00000007370) #9	PIERCE2 (ENSXETG00000036765) #11	dnaaf4 (ENSXETG00000007369) #12	prtg (ENSXETG00000041045) #15	nedd4 (ENSXETG00000016554) #16	rfx7 (ENSXETG00000024544) #18	tex9 (ENSXETG00000024543) #19	mns1 (ENSXETG00000016556) #20	znf280d (ENSXETG00000016560)	ENSXETG00000039109	ENSXETG00000040376	tcf12 (ENSXETG00000016563) #22	cgnl1 (ENSXETG00000010876) #24	myzap (ENSXETG00000040770) #25	polr2m (ENSXETG00000036763) ##25	aldh1a2 (ENSXETG00000010865) #26	aqp9 (ENSXETG00000010861) #28	ENSXETG00000042238	ENSXETG00000044321	lipc (ENSXETG00000032604) #29	adam10 (ENSXETG00000010850) #30	mindy2 (ENSXETG00000010848) #31	ccnb2 (ENSXETG00000010845) #34	rnf111 (ENSXETG00000010842) #33	ENSXETG00000039400	sltm (ENSXETG00000010840) #32	ENSXETG00000043724
Leishan spiny toad	MODERN SPECIES	6	DNAAF4 (ENSLLEG00000006301) #12	ENSLLEG00000006372	PYGO1 (ENSLLEG00000006394) #14	ENSLLEG00000006410	PRTG (ENSLLEG00000006488) #15	NEDD4 (ENSLLEG00000006776) #16	ENSLLEG00000007299	ENSLLEG00000007341	ENSLLEG00000007564	ENSLLEG00000007574	RFX7 (ENSLLEG00000007598) #18	ENSLLEG00000007655	TEX9 (ENSLLEG00000007743) #19	MNS1 (ENSLLEG00000007808) #20	ENSLLEG00000007883	TCF12 (ENSLLEG00000008126) #22	ENSLLEG00000008841	MYO5A (ENSLLEG00000009028)	MYO5C (ENSLLEG00000011900)	GNB5 (ENSLLEG00000012270)	ENSLLEG00000012482	MAPK6 (ENSLLEG00000012510)	ENSLLEG00000012559	ENSLLEG00000012618	LEO1 (ENSLLEG00000012664)	ENSLLEG00000012853	ENSLLEG00000013274	ENSLLEG00000013296	ENSLLEG00000013364	ENSLLEG00000013474	ENSLLEG00000013490
Coelacanth	MODERN SPECIES	695																TCF12 (ENSLACG00000014145) #22	CGNL1 (ENSLACG00000013518) #24	MYZAP (ENSLACG00000012652) #25	ALDH1A2 (ENSLACG00000011494) #26	AQP9 (ENSLACG00000022342) #28	ENSLACG00000010253	LIPC (ENSLACG00000009964) #29	adam10a (ENSLACG00000007565)	MINDY2 (ENSLACG00000006574) #31	SLTM (ENSLACG00000005234) #32	RNF111 (ENSLACG00000003109) #33	ccnb2 (ENSLACG00000002466) #34
Actinopterygii	ANCESTRAL SPECIES	11	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000175584	ENSGT01050000244970.b.j #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000164516	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000156900
Reedfish	MODERN SPECIES	8	ENSECRG00000019635	rsl24d1 (ENSECRG00000019651) #7	rab27a (ENSECRG00000019673) #8	pigb (ENSECRG00000019694) #10	ENSECRG00000019728	PIERCE2 (ENSECRG00000019754) #11	dnaaf4 (ENSECRG00000019772) #12	pygo1 (ENSECRG00000019792) #14	PRTG (ENSECRG00000019885) #15	nedd4a (ENSECRG00000020594) #16	RFX7 (ENSECRG00000020644) #18	tex9 (ENSECRG00000020663) #19	mns1 (ENSECRG00000020681) #20	ENSECRG00000020697	ENSECRG00000020717	tcf12 (ENSECRG00000020790) #22	CGNL1 (ENSECRG00000020873) #24	MYZAP (ENSECRG00000020923) #25	polr2m (ENSECRG00000020969) ##25	aldh1a2 (ENSECRG00000020978) #26	aqp9b (ENSECRG00000020994)	ENSECRG00000021021	lipca (ENSECRG00000021031) #29	adam10a (ENSECRG00000021057)	MINDY2 (ENSECRG00000021090) #31	sltm (ENSECRG00000021115) #32	ENSECRG00000021138 #32	rnf111 (ENSECRG00000021147) #33	ccnb2 (ENSECRG00000021163) #34	MYO1E (ENSECRG00000021197) #35	FAM81A (ENSECRG00000021279)
Neopterygii	ANCESTRAL SPECIES	11	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000168208	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000175584	ENSGT01050000244970.b.j #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919	ENSGT00940000166061.a	ENSGT00940000157602 #29	ENSGT00940000164516	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00390000004985.b	ENSGT00940000156900
Spotted gar	MODERN SPECIES	669	WDR72 (ENSLOCG00000013418)	UNC13C (ENSLOCG00000013431)	rsl24d1 (ENSLOCG00000013445) #7	rab27a (ENSLOCG00000013450) #8	pigb (ENSLOCG00000013454) #10	ENSLOCG00000013465	ENSLOCG00000017945	dnaaf4 (ENSLOCG00000013474) #12	pygo1 (ENSLOCG00000013476) #14	PRTG (ENSLOCG00000013480) #15	nedd4a (ENSLOCG00000013489) #16	RFX7 (ENSLOCG00000013505) #18	tex9 (ENSLOCG00000013508) #19	mns1 (ENSLOCG00000013519) #20	ENSLOCG00000013531	tcf12 (ENSLOCG00000013539) #22	CGNL1 (ENSLOCG00000013547) #24	MYZAP (ENSLOCG00000013563) #25	aldh1a2 (ENSLOCG00000013574) #26	aqp9b (ENSLOCG00000013583)	ENSLOCG00000013591	lipca (ENSLOCG00000013598) #29	adam10a (ENSLOCG00000013609)	MINDY2 (ENSLOCG00000013626) #31	sltm (ENSLOCG00000013629) #32	rnf111 (ENSLOCG00000013642) #33	ccnb2 (ENSLOCG00000013651) #34	MYO1E (ENSLOCG00000013657) #35	FAM81A (ENSLOCG00000013668)	mtmr10 (ENSLOCG00000013672)	fan1 (ENSLOCG00000013674)
Osteoglossocephalai	ANCESTRAL SPECIES	10	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000168208	ENSGT00940000154745.b #11	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047 #22	ENSGT00940000154489.A #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000018637	ENSGT00390000011359
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	37	ENSGT00940000155347.a.b.m	ENSGT00940000154555.f	ENSGT00940000157573.g	ENSGT00950000183103.c.a	ENSGT00940000156218.f #8	ENSGT00950000183090.A #10	ENSGT00940000166643.a	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.j.a #18	ENSGT00390000018333 #19	ENSGT00940000163854.b	ENSGT00940000155047.yb #22	ENSGT00940000154489.A.e #24	ENSGT00950000183065.A.g #25	ENSGT00950000183065.D ##25	ENSGT00940000158898.a #26	ENSGT00940000164919.a	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691.c #33	ENSGT00940000155405.db #34	ENSGT00940000157461.a.a #35	ENSGT00940000156900.t	ENSGT00940000158943.e.a.a	ENSGT00390000008240.c	ENSGT00940000163963.a
Asian bonytongue	MODERN SPECIES	2	MYO5A (ENSSFOG00015024130)	atosa (ENSSFOG00015024125)	onecut1 (ENSSFOG00015024124)	UNC13C (ENSSFOG00015024123)	rab27a (ENSSFOG00015024122) #8	pigb (ENSSFOG00015024121) #10	ENSSFOG00015024119	ENSSFOG00015024118	dnaaf4 (ENSSFOG00015024117) #12	pygo1 (ENSSFOG00015024116) #14	PRTG (ENSSFOG00015024114) #15	nedd4a (ENSSFOG00015024111) #16	RFX7 (ENSSFOG00015024110) #18	tex9 (ENSSFOG00015024108) #19	ENSSFOG00015024105	TCF12 (ENSSFOG00015024100) #22	CGNL1 (ENSSFOG00015024097) #24	MYZAP (ENSSFOG00015024096) #25	polr2m (ENSSFOG00015024095) ##25	aldh1a2 (ENSSFOG00015024093) #26	ENSSFOG00015025649	adam10a (ENSSFOG00015024090)	MINDY2 (ENSSFOG00015024089) #31	sltm (ENSSFOG00015024088) #32	rnf111 (ENSSFOG00015024085) #33	ccnb2 (ENSSFOG00015024081) #34	MYO1E (ENSSFOG00015024079) #35	MTMR10 (ENSSFOG00015024077)	APBA2 (ENSSFOG00015024075)	ENSSFOG00015024073	ENSSFOG00015024069
P. kingsleyae	MODERN SPECIES	14	atosa (ENSPKIG00000021571)	onecut1 (ENSPKIG00000021587)	ENSPKIG00000021615	UNC13C (ENSPKIG00000021669)	rab27a (ENSPKIG00000021729) #8	pigb (ENSPKIG00000021745) #10	ENSPKIG00000021777	dnaaf4 (ENSPKIG00000021803) #12	ENSPKIG00000021823	pygo1 (ENSPKIG00000021833) #14	PRTG (ENSPKIG00000021861) #15	nedd4a (ENSPKIG00000021965) #16	RFX7 (ENSPKIG00000022174) #18	tex9 (ENSPKIG00000022193) #19	ENSPKIG00000022213	TCF12 (ENSPKIG00000022269) #22	CGNL1 (ENSPKIG00000022367) #24	MYZAP (ENSPKIG00000022410) #25	ENSPKIG00000022476	aldh1a2 (ENSPKIG00000022504) #26	ENSPKIG00000022537	adam10a (ENSPKIG00000022560)	MINDY2 (ENSPKIG00000022684) #31	sltm (ENSPKIG00000022760) #32	rnf111 (ENSPKIG00000022818) #33	ccnb2 (ENSPKIG00000022862) #34	MYO1E (ENSPKIG00000022937) #35
Osteoglossiformes	ANCESTRAL SPECIES	132	ENSGT00940000158280.p	ENSGT00940000154351.sb	ENSGT01090000260003.a.b.b.a.a.a.b.a.c	ENSGT01000000214413.a.w	ENSGT00940000155347.a.b.n	ENSGT00940000154555.e.a	ENSGT00940000157573.h	ENSGT00950000183103.c.b	ENSGT00940000155174	ENSGT00950000183105.B #7	ENSGT00940000156218.e #8	ENSGT00940000166643.b	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00730000111210 #20	ENSGT00940000155047.`c #22	ENSGT00940000154489.A.f #24	ENSGT00950000183065.A.h #25	ENSGT00940000158898.b #26	ENSGT00940000157602 #29	ENSGT00940000164516.b	ENSGT00940000157691.d #33	ENSGT00940000155405.eb #34	ENSGT00940000157461.a.b #35	ENSGT00940000156900.s	ENSGT00390000018637	ENSGT00390000011359	ENSGT00940000153941.b	ENSGT00940000158943.e.a.b	ENSGT00390000008240.d	ENSGT00940000163963.b
Asian bonytongue	MODERN SPECIES	22	ENSSFOG00015025524	bcl2l10 (ENSSFOG00015029656)	gnb5a (ENSSFOG00015018623)	MYO5A (ENSSFOG00015018643)	atosa (ENSSFOG00015018727)	onecut1 (ENSSFOG00015018760)	UNC13C (ENSSFOG00015018774)	rsl24d1 (ENSSFOG00015030420) #7	RAB27A (ENSSFOG00015018847) #8	ENSSFOG00015018861	ENSSFOG00015018882 ##15	NEDD4 (ENSSFOG00015018944) #16	RFX7 (ENSSFOG00015026062) #18	mns1 (ENSSFOG00015029570) #20	mns1 (ENSSFOG00015019021) #20	TCF12 (ENSSFOG00015019071) #22	CGNL1 (ENSSFOG00015019177) #24	MYZAP (ENSSFOG00015019197) #25	gatd1 (ENSSFOG00015019214)	fads2 (ENSSFOG00015019252)	mrpl21 (ENSSFOG00015019282)	nqo1 (ENSSFOG00015019294)	ENSSFOG00015019308	celf1 (ENSSFOG00015019353)	ptpmt1 (ENSSFOG00015032056)	ndufs3 (ENSSFOG00015019420)	ENSSFOG00015019439	c1qtnf4 (ENSSFOG00015025161)	pacsin3 (ENSSFOG00015019453)	ambra1a (ENSSFOG00015019495)	CHRM4 (ENSSFOG00015019529)
P. kingsleyae	MODERN SPECIES	16	gnb5a (ENSPKIG00000017871)	MYO5A (ENSPKIG00000017814)	arpp19a (ENSPKIG00000017772)	atosa (ENSPKIG00000017747)	onecut1 (ENSPKIG00000017733)	ENSPKIG00000017721	ENSPKIG00000017708	UNC13C (ENSPKIG00000017661)	rsl24d1 (ENSPKIG00000017615) #7	RAB27A (ENSPKIG00000017595) #8	ENSPKIG00000017481	ENSPKIG00000017440 ##15	NEDD4 (ENSPKIG00000017397) #16	RFX7 (ENSPKIG00000017349) #18	mns1 (ENSPKIG00000017328) #20	TCF12 (ENSPKIG00000017260) #22	trmt2b (ENSPKIG00000017232)	CGNL1 (ENSPKIG00000017200) #24	MYZAP (ENSPKIG00000017167) #25	aldh1a2 (ENSPKIG00000017102) #26	lipca (ENSPKIG00000017054) #29	ENSPKIG00000016991	rnf111 (ENSPKIG00000016836) #33	ccnb2 (ENSPKIG00000016757) #34	MYO1E (ENSPKIG00000016721) #35	ENSPKIG00000016706	ENSPKIG00000016684	mtmr10 (ENSPKIG00000016642)	fan1 (ENSPKIG00000016611)	mphosph10 (ENSPKIG00000016578)	mcee (ENSPKIG00000016546)
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	15	ENSGT00940000155174.f	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155047.ac.a #22
Clupeiformes	ANCESTRAL SPECIES	64	ENSGT00940000164605.e	ENSGT00530000063712.a.a.o.a	ENSGT00530000063712.a.a.o.b	ENSGT00950000182940.b.a.a.g.b	ENSGT00940000155645.i.b	ENSGT00390000015400	ENSGT00390000016068	ENSGT00940000159749	ENSGT00390000011846	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00940000156912.c.a	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Denticle herring	MODERN SPECIES	7	mespaa (ENSDCDG00000021068)	mespba (ENSDCDG00000021065)	sv2ba (ENSDCDG00000021060)	NTRK3 (ENSDCDG00000021018)	mrpl46 (ENSDCDG00000021015)	mrps11 (ENSDCDG00000021014)	kif7 (ENSDCDG00000020994)	tssc4 (ENSDCDG00000020982)	ANO9 (ENSDCDG00000020976)	PKP3 (ENSDCDG00000020969)	cd81a (ENSDCDG00000020963)	kcnc1a (ENSDCDG00000020959)	TPH1 (ENSDCDG00000019305)	mns1 (ENSDCDG00000019253) #20	ENSDCDG00000019238	ENSDCDG00000019213 #22	CGNL1 (ENSDCDG00000019195) #24	atosa (ENSDCDG00000019172)	ENSDCDG00000019163	SNX1 (ENSDCDG00000019061)	acp2 (ENSDCDG00000019050)	acp2 (ENSDCDG00000019046)	ambra1a (ENSDCDG00000018998)	CHRM4 (ENSDCDG00000018968)	mdka (ENSDCDG00000018964)	ENSDCDG00000018957	DGKZ (ENSDCDG00000018424)	creb3l1 (ENSDCDG00000018414)	phf21aa (ENSDCDG00000018390)	zgc:110699 (ENSDCDG00000018383)	atg13 (ENSDCDG00000018267)
Atlantic herring	MODERN SPECIES	12	mrpl46 (ENSCHAG00000003817)	mrps11 (ENSCHAG00000003809)	ENSCHAG00000003796	kif7 (ENSCHAG00000003319)	tssc4 (ENSCHAG00000003290)	ENSCHAG00000003259	ENSCHAG00000001269	ENSCHAG00000000565	cd81a (ENSCHAG00000000536)	kcnc1a (ENSCHAG00000022454)	TPH1 (ENSCHAG00000021362)	ENSCHAG00000021310	mns1 (ENSCHAG00000021294) #20	ENSCHAG00000021220	ENSCHAG00000021215	TCF12 (ENSCHAG00000021076) #22	MYZAP (ENSCHAG00000020964) #25	polr2m (ENSCHAG00000020954) ##25	aldh1a2 (ENSCHAG00000016706) #26	aqp9b (ENSCHAG00000016470)	lipca (ENSCHAG00000015913) #29	ENSCHAG00000015875	adam10a (ENSCHAG00000013634)	FLRT1 (ENSCHAG00000013583)	macrod1 (ENSCHAG00000013552)	ccdc88b (ENSCHAG00000013532)	rom1b (ENSCHAG00000013371)	ENSCHAG00000013353	clic2 (ENSCHAG00000013174)	ENSCHAG00000013152	ocrl (ENSCHAG00000011561)
Euteleosteomorpha	ANCESTRAL SPECIES	48		ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00940000155883.a.b.a.b	ENSGT00940000154065.a	ENSGT00950000183105.B #7	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000168208	ENSGT00390000004930 #12	ENSGT00530000063948.b #14	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.j.a #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000164516.a	ENSGT00940000157602 #29	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	67	ENSGT00390000002016.d	ENSGT00940000155883.a.b.a.b.b.b	ENSGT00940000154065.a.r	ENSGT00950000183105.B.e.a #7	ENSGT00940000156218.h #8	ENSGT00940000166643.e	ENSGT00940000168208	ENSGT00390000004930.o #12	ENSGT00530000063948.b.a #14	ENSGT00940000155943.a.e #15	ENSGT00940000158905.a #16	ENSGT01050000244970.b.j.a.d #18	ENSGT00390000018333.a #19	ENSGT00730000111210 #20	ENSGT00940000163854.b.e	ENSGT00940000155047.ac.a.a.a #22	ENSGT00940000154489.A.c.c #24	ENSGT00950000183065.A.l #25	ENSGT00950000183065.D.b ##25	ENSGT00940000158898.f.a.a.a #26	ENSGT00940000164919.b.c.b	ENSGT00940000157602.d #29	ENSGT00940000164516.a.h	ENSGT00390000016607.a.o.a #31	ENSGT00940000156573.h #32	ENSGT00940000157691.h #33	ENSGT00940000155405.cb #34	ENSGT00940000157461.c.b #35	ENSGT00940000156900.n.b.a.b	ENSGT00940000159421.j.a	ENSGT00950000182838.B.a.a.h
Salmoninae_a	ANCESTRAL SPECIES	72	ENSGT00390000002016.d	ENSGT00940000155883.a.b.a.b.b.b	ENSGT00940000154065.a.r	ENSGT00950000183105.B.e.a #7	ENSGT00940000156218.h #8	ENSGT00940000166643.e	ENSGT00940000168208	ENSGT00390000004930.o #12	ENSGT00530000063948.b.a #14	ENSGT00940000155943.a.e #15	ENSGT00940000158905.a #16	ENSGT01050000244970.b.j.a.d #18	ENSGT00390000018333.a #19	ENSGT00730000111210.h #20	ENSGT00940000163854.b.e	ENSGT00940000155047.ac.a.a.a #22	ENSGT00940000154489.A.c.c #24	ENSGT00950000183065.A.l #25	ENSGT00950000183065.D.b ##25	ENSGT00940000158898.f.a.a.a #26	ENSGT00940000164919.b.c.b	ENSGT00940000158898.f.b #26	ENSGT00940000164919.b.d	ENSGT00940000157602.d #29	ENSGT00940000164516.a.h.a	ENSGT00390000016607.a.o.a #31	ENSGT00940000156573.h #32	ENSGT00940000157691.h #33	ENSGT00940000155405.cb #34	ENSGT00940000157461.c.b #35	ENSGT00940000156900.n.b.a.a
Oncorhynchus	ANCESTRAL SPECIES	32	ENSGT00390000002016.d	ENSGT00940000155883.a.b.a.b.b.b	ENSGT00940000154065.a.r	ENSGT00950000183105.B.e.a #7	ENSGT00940000156218.h #8	ENSGT00940000166643.e	ENSGT00940000168208	ENSGT00390000004930.o #12	ENSGT00530000063948.b.a #14	ENSGT00940000155943.a.e #15	ENSGT00940000158905.a #16	ENSGT01050000244970.b.j.a.d #18	ENSGT00390000018333.a #19	ENSGT00730000111210.h #20	ENSGT00940000163854.b.e	ENSGT00940000155047.ac.a.a.a #22	ENSGT00940000154489.A.c.c #24	ENSGT00950000183065.A.l #25	ENSGT00950000183065.D.b ##25	ENSGT00940000158898.f.b #26	ENSGT00940000164919.b.d.b	ENSGT00940000157602.d #29	ENSGT00940000164516.a.h.a	ENSGT00390000016607.a.o.a #31	ENSGT00940000156573.h #32	ENSGT00940000157691.h #33	ENSGT00940000155405.cb #34	ENSGT00940000157461.c.b #35	ENSGT00940000156900.n.b.a.a	ENSGT00390000005939.b.k	ENSGT00940000159421.i
Rainbow trout	MODERN SPECIES	18	gnao1b (ENSOMYG00000047042)	ENSOMYG00000047001	RSL24D1 (ENSOMYG00000046972) #7	RAB27A (ENSOMYG00000046971) #8	ENSOMYG00000048047	ENSOMYG00000046967	ENSOMYG00000046959	DNAAF4 (ENSOMYG00000046955) #12	PYGO1 (ENSOMYG00000046954) #14	PRTG (ENSOMYG00000046949) #15	NEDD4 (ENSOMYG00000046926) #16	RFX7 (ENSOMYG00000046895) #18	TEX9 (ENSOMYG00000046885) #19	MNS1 (ENSOMYG00000048241) #20	ENSOMYG00000068994	TCF12 (ENSOMYG00000046858) #22	CGNL1 (ENSOMYG00000046818) #24	MYZAP (ENSOMYG00000046800) #25	polr2m (ENSOMYG00000046796) ##25	aldh1a2 (ENSOMYG00000046040) #26	aqp9b (ENSOMYG00000045865)	lipca (ENSOMYG00000071826) #29	ada10 (ENSOMYG00000045086)	MINDY2 (ENSOMYG00000045005) #31	sltm (ENSOMYG00000044989) #32	RNF111 (ENSOMYG00000044959) #33	ccnb2 (ENSOMYG00000044948) #34	MYO1E (ENSOMYG00000042264) #35	mtmr10 (ENSOMYG00000041001)	ENSOMYG00000040903	ENSOMYG00000040899
Oncorhynchus_a	ANCESTRAL SPECIES	28	ENSGT00390000002016.d	ENSGT00940000155883.a.b.a.b.b.b	ENSGT00940000154065.a.r	ENSGT00950000183105.B.e.a #7	ENSGT00940000156218.h #8	ENSGT00940000166643.e	ENSGT00940000168208	ENSGT00390000004930.o #12	ENSGT00530000063948.b.a #14	ENSGT00940000155943.a.e #15	ENSGT00940000158905.a #16	ENSGT01050000244970.b.j.a.d #18	ENSGT00390000018333.a #19	ENSGT00730000111210.h #20	ENSGT00940000163854.b.e	ENSGT00940000155047.ac.a.a.a #22	ENSGT00940000154489.A.c.c #24	ENSGT00950000183065.A.l #25	ENSGT00950000183065.D.b ##25	ENSGT00940000158898.f.b #26	ENSGT00940000164919.b.d.b	ENSGT00940000157602.d #29	ENSGT00940000164516.a.h.a	ENSGT01030000234641.b.a.b.a.a.h.b.b	ENSGT00390000016607.a.o.a #31	ENSGT00940000156573.h #32	ENSGT00940000157691.h #33	ENSGT00940000155405.cb #34	ENSGT00940000157461.c.b #35	ENSGT00940000156900.n.b.a.a	ENSGT00390000005939.b.k
Coho salmon	MODERN SPECIES	28	NUDT21 (ENSOKIG00005050618)	ogfod1 (ENSOKIG00005050585)	tradd (ENSOKIG00005050569)	gnao1b (ENSOKIG00005050565)	cog4 (ENSOKIG00005050557)	RAB27A (ENSOKIG00005050548) #8	ENSOKIG00005050537	ENSOKIG00005050533	dnaaf4 (ENSOKIG00005050530) #12	PYGO1 (ENSOKIG00005050529) #14	PRTG (ENSOKIG00005050525) #15	nedd4a (ENSOKIG00005050481) #16	RFX7 (ENSOKIG00005050445) #18	tex9 (ENSOKIG00005050435) #19	ENSOKIG00005050426	TCF12 (ENSOKIG00005050378) #22	CGNL1 (ENSOKIG00005050351) #24	MYZAP (ENSOKIG00005050342) #25	polr2m (ENSOKIG00005050337) ##25	aldh1a2 (ENSOKIG00005049959) #26	aqp9b (ENSOKIG00005049859)	lipca (ENSOKIG00005049855) #29	ENSOKIG00005049852	adam10a (ENSOKIG00005049779)	MINDY2 (ENSOKIG00005049740) #31	sltm (ENSOKIG00005049690) #32	RNF111 (ENSOKIG00005049645) #33	ccnb2 (ENSOKIG00005049632) #34	MYO1E (ENSOKIG00005048322) #35	mtmr10 (ENSOKIG00005047761)	ATXN1L (ENSOKIG00005047704)
Chinook salmon	MODERN SPECIES	3	cmtr2 (ENSOTSG00005016815)	ENSOTSG00005016814	dnaaf1 (ENSOTSG00005016813)	nrn1lb (ENSOTSG00005016811)	thap11 (ENSOTSG00005016810)	ENSOTSG00005016809	ENSOTSG00005016808	vrk3 (ENSOTSG00005016806)	ENSOTSG00005016805	ENSOTSG00005016803	ENSOTSG00005016801	nudt21 (ENSOTSG00005016800)	ogfod1 (ENSOTSG00005016758)	tradd (ENSOTSG00005016756)	ENSOTSG00005016755	TCF12 (ENSOTSG00005016743) #22	CGNL1 (ENSOTSG00005016713) #24	MYZAP (ENSOTSG00005016707) #25	ENSOTSG00005016678	aldh1a2 (ENSOTSG00005034114) #26	aqp9b (ENSOTSG00005034098)	lipca (ENSOTSG00005034093) #29	ENSOTSG00005034091	adam10a (ENSOTSG00005033674)	MINDY2 (ENSOTSG00005033664) #31	sltm (ENSOTSG00005033644) #32	rnf111 (ENSOTSG00005033594) #33	ccnb2 (ENSOTSG00005033591) #34	MYO1E (ENSOTSG00005033013) #35	mtmr10 (ENSOTSG00005031210)	ATXN1L (ENSOTSG00005031205)
Salmo	ANCESTRAL SPECIES	27	ENSGT00390000002016.d	ENSGT00940000155883.a.b.a.b.b.b	ENSGT00940000154065.a.r	ENSGT00950000183105.B.e.a #7	ENSGT00940000156218.h #8	ENSGT00940000166643.e	ENSGT00940000168208	ENSGT00390000004930.o #12	ENSGT00530000063948.b.a #14	ENSGT00940000155943.a.e #15	ENSGT00940000158905.a #16	ENSGT01050000244970.b.j.a.d #18	ENSGT00390000018333.a #19	ENSGT00730000111210.h #20	ENSGT00940000163854.b.e	ENSGT00940000155047.ac.a.a.a #22	ENSGT00940000154489.A.c.c #24	ENSGT00950000183065.A.l #25	ENSGT00950000183065.D.b ##25	ENSGT00940000158898.f.a.a.a #26	ENSGT00940000164919.b.c.b	ENSGT00940000157602.d #29	ENSGT00940000164516.a.h.b	ENSGT01030000234641.b.a.b.a.a.h.b.a	ENSGT00390000016607.a.o.a #31	ENSGT00940000156573.h #32	ENSGT00940000157691.h #33	ENSGT00940000155405.cb #34	ENSGT00940000157461.c.b #35	ENSGT00940000156900.n.a	ENSGT00390000005939.b.k
River trout	MODERN SPECIES	3	tradd (ENSSTUG00000050327)	gnao1b (ENSSTUG00000050295)	cog4 (ENSSTUG00000050264)	rsl24d1 (ENSSTUG00000050254) #7	rab27a (ENSSTUG00000050252) #8	ENSSTUG00000050248	ENSSTUG00000050245	dnaaf4 (ENSSTUG00000050241) #12	pygo1 (ENSSTUG00000050240) #14	PRTG (ENSSTUG00000050209) #15	nedd4a (ENSSTUG00000050167) #16	RFX7 (ENSSTUG00000050159) #18	tex9 (ENSSTUG00000050149) #19	mns1 (ENSSTUG00000050146) #20	ENSSTUG00000050144	TCF12 (ENSSTUG00000050131) #22	CGNL1 (ENSSTUG00000050118) #24	MYZAP (ENSSTUG00000050112) #25	polr2m (ENSSTUG00000050107) ##25	aldh1a2 (ENSSTUG00000049716) #26	aqp9b (ENSSTUG00000049690)	lipca (ENSSTUG00000049662) #29	sfxn3 (ENSSTUG00000049658)	adam10a (ENSSTUG00000048989)	MINDY2 (ENSSTUG00000048921) #31	sltm (ENSSTUG00000048906) #32	rnf111 (ENSSTUG00000048871) #33	ENSSTUG00000045989 #35	mtmr10 (ENSSTUG00000045597)	ATXN1L (ENSSTUG00000045589)	ZNF821 (ENSSTUG00000045580)
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000010261	RAB27A (ENSSSAG00000088876) #8	ENSSSAG00000085062	ENSSSAG00000083952	ccpg1 (ENSSSAG00000010184)	ENSSSAG00000121142	dyx1c1 (ENSSSAG00000010159) #12	PYGO1 (ENSSSAG00000081320) #14	PRTG (ENSSSAG00000010107) #15	NEDD4 (ENSSSAG00000005199) #16	RFX7 (ENSSSAG00000109816) #18	TEX9 (ENSSSAG00000004947) #19	MNS1 (ENSSSAG00000004875) #20	ENSSSAG00000004838	ENSSSAG00000004823 #22	ENSSSAG00000004152 #22	ENSSSAG00000098345	cgnl1 (ENSSSAG00000004092) #24	MYZAP (ENSSSAG00000080951) #25	polr2m (ENSSSAG00000004050) ##25	aldh1a2 (ENSSSAG00000004552) #26	aqp9b (ENSSSAG00000094256)	lipca (ENSSSAG00000003952) #29	ENSSSAG00000076061	adam10 (ENSSSAG00000080438)	fam63b (ENSSSAG00000113578) #31	sltm (ENSSSAG00000073300) #32	rnf111 (ENSSSAG00000073003) #33	ccnb2 (ENSSSAG00000072975) #34	MYO1E (ENSSSAG00000079260) #35	mtmr10 (ENSSSAG00000072451)
Huchen	MODERN SPECIES	134	tradd (ENSHHUG00000021603)	gnao1b (ENSHHUG00000021615)	cog4 (ENSHHUG00000021644)	rsl24d1 (ENSHHUG00000021837) #7	rab27a (ENSHHUG00000021860) #8	pigb (ENSHHUG00000021876) #10	ENSHHUG00000021908	ENSHHUG00000021949	dnaaf4 (ENSHHUG00000021954) #12	pygo1 (ENSHHUG00000021970) #14	PRTG (ENSHHUG00000021975) #15	nedd4a (ENSHHUG00000022008) #16	RFX7 (ENSHHUG00000022096) #18	tex9 (ENSHHUG00000022141) #19	ENSHHUG00000022190	TCF12 (ENSHHUG00000022209) #22	CGNL1 (ENSHHUG00000022290) #24	MYZAP (ENSHHUG00000022301) #25	polr2m (ENSHHUG00000022312) ##25	aldh1a2 (ENSHHUG00000022328) #26	aqp9b (ENSHHUG00000022986)	lipca (ENSHHUG00000023005) #29
Salmoninae	ANCESTRAL SPECIES	421								ENSGT00390000004930.p #12	ENSGT00530000063948.b.b #14	ENSGT00940000155943.a.f #15	ENSGT00940000158905.b #16	ENSGT01050000244970.b.j.a.c #18	ENSGT00390000018333.b #19	ENSGT00940000175584	ENSGT00940000163854.b.f	ENSGT00940000155047.ac.a.a.b #22	ENSGT00940000154489.A.c.d #24	ENSGT00950000183065.A.k #25	ENSGT00950000183065.D.a ##25	ENSGT00940000158898.e #26	ENSGT00940000158898.f.a.b #26	ENSGT00940000164919.b.c.a	ENSGT00940000157602.c #29	ENSGT00940000164516.a.g	ENSGT00390000016607.a.o.b #31	ENSGT00940000156573.g #32	ENSGT00940000157691.g #33	ENSGT00940000155405.bb #34	ENSGT00940000157461.c.a #35	ENSGT00940000156900.m	ENSGT00390000005939.b
Huchen	MODERN SPECIES	149	cog4 (ENSHHUG00000038422)	rsl24d1 (ENSHHUG00000038582) #7	rab27a (ENSHHUG00000038751) #8	pigb (ENSHHUG00000038759) #10	ENSHHUG00000038778	ENSHHUG00000038806	dnaaf4 (ENSHHUG00000038810) #12	pygo1 (ENSHHUG00000038817) #14	ENSHHUG00000038819 #15	ENSHHUG00000038822 #15	nedd4a (ENSHHUG00000038824) #16	RFX7 (ENSHHUG00000038944) #18	tex9 (ENSHHUG00000038953) #19	mns1 (ENSHHUG00000038986) #20	ENSHHUG00000038993	TCF12 (ENSHHUG00000039004) #22	CGNL1 (ENSHHUG00000039040) #24	MYZAP (ENSHHUG00000039058) #25	polr2m (ENSHHUG00000039087) ##25	aldh1a2 (ENSHHUG00000039119) #26	aqp9b (ENSHHUG00000040749)	lipca (ENSHHUG00000040751) #29	adam10a (ENSHHUG00000040774)	MINDY2 (ENSHHUG00000040831) #31	ENSHHUG00000040837	sltm (ENSHHUG00000040842) #32	rnf111 (ENSHHUG00000040848) #33	ccnb2 (ENSHHUG00000040871) #34	MYO1E (ENSHHUG00000040892) #35	mtmr10 (ENSHHUG00000041229)	ATXN1L (ENSHHUG00000041262)
Salmoninae_a	ANCESTRAL SPECIES	73	ENSGT00390000002016.c	ENSGT00940000155883.a.b.a.b.b.a	ENSGT00940000154065.a.q	ENSGT00950000183105.B.e.b #7	ENSGT00940000156218.g #8	ENSGT00950000183090.A #10	ENSGT00940000166643.f	ENSGT00390000004930.p #12	ENSGT00530000063948.b.b #14	ENSGT00940000155943.a.f #15	ENSGT00940000158905.b #16	ENSGT01050000244970.b.j.a.c #18	ENSGT00390000018333.b #19	ENSGT00730000111210.g #20	ENSGT00940000163854.b.f	ENSGT00940000155047.ac.a.a.b #22	ENSGT00940000154489.A.c.d #24	ENSGT00950000183065.A.k #25	ENSGT00950000183065.D.a ##25	ENSGT00940000158898.e #26	ENSGT00940000158898.f.a.b #26	ENSGT00940000164919.b.c.a	ENSGT00940000157602.c #29	ENSGT00940000164516.a.g	ENSGT00390000016607.a.o.b #31	ENSGT00940000156573.g #32	ENSGT00940000157691.g #33	ENSGT00940000155405.bb #34	ENSGT00940000157461.c.a #35	ENSGT00940000156900.m	ENSGT00390000005939.b.l
Salmo	ANCESTRAL SPECIES	30	ENSGT00390000002349.b	ENSGT00390000002016.c	ENSGT00940000155883.a.b.a.b.b.a	ENSGT00940000154065.a.q	ENSGT00940000156218.g #8	ENSGT00950000183090.A #10	ENSGT00940000166643.f	ENSGT00390000004930.p #12	ENSGT00530000063948.b.b #14	ENSGT00940000155943.a.f #15	ENSGT00940000158905.b #16	ENSGT01050000244970.b.j.a.c #18	ENSGT00940000175584	ENSGT00730000111210.g #20	ENSGT00940000163854.b.f	ENSGT00940000155047.ac.a.a.b #22	ENSGT00940000154489.A.c.d #24	ENSGT00950000183065.A.k #25	ENSGT00950000183065.D.a ##25	ENSGT00940000158898.f.a.b #26	ENSGT00940000164919.b.c.a	ENSGT00940000157602.c #29	ENSGT00940000164516.a.h.a	ENSGT01030000234641.b.a.b.a.a.h.b.b	ENSGT00390000016607.a.o.b #31	ENSGT00940000156573.g #32	ENSGT00940000157691.g #33	ENSGT00940000155405.bb #34	ENSGT00940000157461.c.a #35	ENSGT00940000156900.m	ENSGT00390000005939.b.l
River trout	MODERN SPECIES	21	gnao1b (ENSSTUG00000036225)	cog4 (ENSSTUG00000036323)	rsl24d1 (ENSSTUG00000037079) #7	rab27a (ENSSTUG00000037115) #8	ENSSTUG00000037141	pigb (ENSSTUG00000037147) #10	ENSSTUG00000037157	dnaaf4 (ENSSTUG00000037247) #12	pygo1 (ENSSTUG00000037286) #14	PRTG (ENSSTUG00000037306) #15	nedd4a (ENSSTUG00000037818) #16	RFX7 (ENSSTUG00000038613) #18	ENSSTUG00000038641	mns1 (ENSSTUG00000038649) #20	ENSSTUG00000038668	TCF12 (ENSSTUG00000038698) #22	CGNL1 (ENSSTUG00000038821) #24	MYZAP (ENSSTUG00000038920) #25	polr2m (ENSSTUG00000038935) ##25	aldh1a2 (ENSSTUG00000039031) #26	aqp9b (ENSSTUG00000044458)	lipca (ENSSTUG00000044466) #29	adam10a (ENSSTUG00000044578)	ENSSTUG00000046648	MINDY2 (ENSSTUG00000046651) #31	sltm (ENSSTUG00000046659) #32	rnf111 (ENSSTUG00000046670) #33	ccnb2 (ENSSTUG00000046707) #34	MYO1E (ENSSTUG00000046820) #35	mtmr10 (ENSSTUG00000048851)	ATXN1L (ENSSTUG00000049223)
Atlantic salmon	MODERN SPECIES	18	tradd (ENSSSAG00000081374)	gnao1b (ENSSSAG00000101976)	cog4 (ENSSSAG00000081348)	RAB27A (ENSSSAG00000106015) #8	ENSSSAG00000098858	pigb (ENSSSAG00000081337) #10	ENSSSAG00000081330	DNAAF4 (ENSSSAG00000081323) #12	pygo1 (ENSSSAG00000102346) #14	PRTG (ENSSSAG00000081311) #15	NEDD4 (ENSSSAG00000081240) #16	RFX7 (ENSSSAG00000092049) #18	MNS1 (ENSSSAG00000081198) #20	ENSSSAG00000100955	ENSSSAG00000110564	ENSSSAG00000080956 #22	CGNL1 (ENSSSAG00000080952) #24	MYZAP (ENSSSAG00000080949) #25	aldh1a2 (ENSSSAG00000080896) #26	aqp9b (ENSSSAG00000080852)	lipca (ENSSSAG00000080816) #29	ENSSSAG00000080797	adam10a (ENSSSAG00000090727)	MINDY2 (ENSSSAG00000073871) #31	sltm (ENSSSAG00000080371) #32	rnf111 (ENSSSAG00000080348) #33	ccnb2 (ENSSSAG00000080343) #34	MYO1E (ENSSSAG00000072531) #35	mtmr10 (ENSSSAG00000079079)	ENSSSAG00000085762	ENSSSAG00000081179
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000002349.b	ENSGT00390000002016.c	ENSGT00940000155883.a.b.a.b.b.a	ENSGT00940000154065.a.q	ENSGT00950000183105.B.e.b #7	ENSGT00940000156218.g #8	ENSGT00950000183090.A #10	ENSGT00940000166643.f	ENSGT00530000063948.b.b #14	ENSGT00940000155943.a.f #15	ENSGT00940000158905.b #16	ENSGT01050000244970.b.j.a.c #18	ENSGT00390000018333.b #19	ENSGT00730000111210.g #20	ENSGT00940000163854.b.f	ENSGT00940000155047.ac.a.a.b #22	ENSGT00940000154489.A.c.d #24	ENSGT00950000183065.A.k #25	ENSGT00950000183065.D.a ##25	ENSGT00940000158898.e #26	ENSGT00940000164919.b.d.a	ENSGT00940000157602.c #29	ENSGT00940000164516.a.g	ENSGT00390000016607.a.o.b #31	ENSGT00940000156573.g #32	ENSGT00940000157691.g #33	ENSGT00940000155405.bb #34	ENSGT00940000157461.c.a #35	ENSGT00940000156900.m	ENSGT00390000005939.b.l	ENSGT00940000159421.j.b
Rainbow trout	MODERN SPECIES	27	tradd (ENSOMYG00000020592)	gnao1b (ENSOMYG00000020514)	ENSOMYG00000020165	RSL24D1 (ENSOMYG00000020142) #7	RAB27A (ENSOMYG00000020131) #8	pigb (ENSOMYG00000020124) #10	ENSOMYG00000020103	PYGO1 (ENSOMYG00000020088) #14	PRTG (ENSOMYG00000019940) #15	ENSOMYG00000019906	NEDD4 (ENSOMYG00000019733) #16	RFX7 (ENSOMYG00000019625) #18	ENSOMYG00000019612	ENSOMYG00000019580	ENSOMYG00000054312	TCF12 (ENSOMYG00000019525) #22	CGNL1 (ENSOMYG00000019496) #24	MYZAP (ENSOMYG00000019482) #25	polr2m (ENSOMYG00000019474) ##25	aldh1a2 (ENSOMYG00000011624) #26	aqp9b (ENSOMYG00000011272)	lipca (ENSOMYG00000010986) #29	ENSOMYG00000071926	adam10a (ENSOMYG00000010593)	ENSOMYG00000060295	MINDY2 (ENSOMYG00000010416) #31	sltm (ENSOMYG00000010350) #32	ENSOMYG00000010339	ENSOMYG00000070282	rnf111 (ENSOMYG00000010301) #33	ccnb2 (ENSOMYG00000010271) #34
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000015814.ic.a.c	ENSGT00390000002349.b	ENSGT00940000155883.a.b.a.b.b.a	ENSGT00940000154065.a.q	ENSGT00950000183105.B.e.b #7	ENSGT00940000156218.g #8	ENSGT00950000183090.A #10	ENSGT00940000166643.f	ENSGT00530000063948.b.b #14	ENSGT00940000155943.a.f #15	ENSGT00940000158905.b #16	ENSGT01050000244970.b.j.a.c #18	ENSGT00390000018333.b #19	ENSGT00730000111210.g #20	ENSGT00940000163854.b.f	ENSGT00940000155047.ac.a.a.b #22	ENSGT00940000154489.A.c.d #24	ENSGT00950000183065.A.k #25	ENSGT00950000183065.D.a ##25	ENSGT00940000158898.e #26	ENSGT00940000164919.b.d.a	ENSGT00940000157602.c #29	ENSGT00940000164516.a.g	ENSGT00390000016607.a.o.b #31	ENSGT00940000156573.g #32	ENSGT00940000157691.g #33	ENSGT00940000155405.bb #34	ENSGT00940000157461.c.a #35	ENSGT00940000156900.m	ENSGT00390000005939.b.l	ENSGT00940000159421.j.b
Coho salmon	MODERN SPECIES	22	NUDT21 (ENSOKIG00005020011)	ENSOKIG00005019927	gnao1b (ENSOKIG00005019813)	COG4 (ENSOKIG00005019407)	rsl24d1 (ENSOKIG00005019374) #7	rab27a (ENSOKIG00005019348) #8	pigb (ENSOKIG00005019293) #10	ENSOKIG00005019233	pygo1 (ENSOKIG00005019226) #14	PRTG (ENSOKIG00005019044) #15	NEDD4 (ENSOKIG00005018307) #16	RFX7 (ENSOKIG00005050719) #18	ENSOKIG00005050717	mns1 (ENSOKIG00005050712) #20	ENSOKIG00005050708	TCF12 (ENSOKIG00005050695) #22	CGNL1 (ENSOKIG00005050688) #24	MYZAP (ENSOKIG00005050682) #25	polr2m (ENSOKIG00005050678) ##25	aldh1a2 (ENSOKIG00005050499) #26	aqp9b (ENSOKIG00005050431)	lipca (ENSOKIG00005050427) #29	adam10a (ENSOKIG00005050317)	MINDY2 (ENSOKIG00005050280) #31	sltm (ENSOKIG00005050256) #32	ENSOKIG00005050250	rnf111 (ENSOKIG00005050243) #33	ccnb2 (ENSOKIG00005050238) #34	MYO1E (ENSOKIG00005049948) #35	mtmr10 (ENSOKIG00005049846)	ATXN1L (ENSOKIG00005049840)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155047.ac.a.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155047.ac.a.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155047.ac.a.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155047.ac.a.b #22
Chinook salmon	MODERN SPECIES	28	nudt21 (ENSOTSG00005012393)	ogfod1 (ENSOTSG00005012392)	gnao1b (ENSOTSG00005012385)	ENSOTSG00005012384	rsl24d1 (ENSOTSG00005012383) #7	rab27a (ENSOTSG00005012382) #8	ENSOTSG00005012381	dnaaf4 (ENSOTSG00005012376) #12	pygo1 (ENSOTSG00005012375) #14	PRTG (ENSOTSG00005012350) #15	nedd4a (ENSOTSG00005012077) #16	RFX7 (ENSOTSG00005012072) #18	tex9 (ENSOTSG00005012067) #19	mns1 (ENSOTSG00005011913) #20	ENSOTSG00005011909	TCF12 (ENSOTSG00005011905) #22	CGNL1 (ENSOTSG00005011902) #24	MYZAP (ENSOTSG00005011898) #25	polr2m (ENSOTSG00005011895) ##25	aldh1a2 (ENSOTSG00005007244) #26	aqp9b (ENSOTSG00005007214)	lipca (ENSOTSG00005007154) #29	adam10a (ENSOTSG00005007129)	MINDY2 (ENSOTSG00005007127) #31	sltm (ENSOTSG00005007124) #32	rnf111 (ENSOTSG00005007097) #33	ccnb2 (ENSOTSG00005007096) #34	MYO1E (ENSOTSG00005000449) #35	mtmr10 (ENSOTSG00005000411)	ATXN1L (ENSOTSG00005000399)	ZNF821 (ENSOTSG00005000397)
Northern pike	MODERN SPECIES	1	tradd (ENSELUG00000011996)	gnao1b (ENSELUG00000012020)	cog4 (ENSELUG00000012108)	rsl24d1 (ENSELUG00000012222) #7	rab27a (ENSELUG00000012242) #8	pigb (ENSELUG00000012300) #10	ENSELUG00000012370	ENSELUG00000012395	pygo1 (ENSELUG00000012469) #14	PRTG (ENSELUG00000012536) #15	nedd4a (ENSELUG00000012706) #16	ENSELUG00000012813 #18	tex9 (ENSELUG00000012830) #19	mns1 (ENSELUG00000012842) #20	ENSELUG00000012864	TCF12 (ENSELUG00000013010) #22	CGNL1 (ENSELUG00000013069) #24	MYZAP (ENSELUG00000013126) #25	polr2m (ENSELUG00000013144) ##25	aldh1a2 (ENSELUG00000013199) #26	aqp9b (ENSELUG00000013223)	adam10a (ENSELUG00000013272)	MINDY2 (ENSELUG00000013332) #31	sltm (ENSELUG00000013388) #32	rnf111 (ENSELUG00000013469) #33	ccnb2 (ENSELUG00000013642) #34	MYO1E (ENSELUG00000013729) #35	mtmr10 (ENSELUG00000013811)	ATXN1L (ENSELUG00000013842)	ZNF821 (ENSELUG00000013877)	ap1g1 (ENSELUG00000013947)
Acanthomorphata	ANCESTRAL SPECIES	18	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	23	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Oryzias	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000156386.i	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000156386.i	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Javanese ricefish	MODERN SPECIES	17	ogfod1 (ENSOJAG00000024002)	nudt21 (ENSOJAG00000024001)	CTCF (ENSOJAG00000023999)	ENSOJAG00000023997	ENSOJAG00000023995	rab27a (ENSOJAG00000023994) #8	kif3a (ENSOJAG00000023980)	pigb (ENSOJAG00000023972) #10	ENSOJAG00000023970	PRTG (ENSOJAG00000023956) #15	nedd4a (ENSOJAG00000023841) #16	ENSOJAG00000023759 #18	tex9 (ENSOJAG00000023756) #19	mns1 (ENSOJAG00000023753) #20	ENSOJAG00000023752	TCF12 (ENSOJAG00000023741) #22	CGNL1 (ENSOJAG00000023730) #24	MYZAP (ENSOJAG00000023723) #25	ENSOJAG00000023720	polr2m (ENSOJAG00000023719) ##25	aldh1a2 (ENSOJAG00000023437) #26	aqp9b (ENSOJAG00000023299)	lipca (ENSOJAG00000023259) #29	adam10a (ENSOJAG00000022914)	MINDY2 (ENSOJAG00000022846) #31	sltm (ENSOJAG00000022834) #32	rnf111 (ENSOJAG00000022800) #33	MYO1E (ENSOJAG00000022570) #35	mtmr10 (ENSOJAG00000022160)	ATXN1L (ENSOJAG00000022110)	ENSOJAG00000022109
Indian medaka	MODERN SPECIES	26	tradd (ENSOMEG00000002387)	ogfod1 (ENSOMEG00000002382)	nudt21 (ENSOMEG00000002368)	CTCF (ENSOMEG00000002356)	vrk3 (ENSOMEG00000002338)	rab27a (ENSOMEG00000002326) #8	kif3a (ENSOMEG00000002318)	pigb (ENSOMEG00000002300) #10	ENSOMEG00000002291	PRTG (ENSOMEG00000002277) #15	nedd4a (ENSOMEG00000002259) #16	ENSOMEG00000002248 #18	tex9 (ENSOMEG00000002240) #19	mns1 (ENSOMEG00000002229) #20	ENSOMEG00000002222	TCF12 (ENSOMEG00000002200) #22	CGNL1 (ENSOMEG00000002146) #24	MYZAP (ENSOMEG00000002127) #25	polr2m (ENSOMEG00000002115) ##25	aldh1a2 (ENSOMEG00000002105) #26	aqp9b (ENSOMEG00000000028)	lipca (ENSOMEG00000000026) #29	adam10a (ENSOMEG00000000023)	MINDY2 (ENSOMEG00000002053) #31	sltm (ENSOMEG00000002041) #32	ENSOMEG00000002031 #32	rnf111 (ENSOMEG00000002018) #33	MYO1E (ENSOMEG00000001981) #35	mtmr10 (ENSOMEG00000001940)	ATXN1L (ENSOMEG00000001916)	ENSOMEG00000001914
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000156386.i	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Japanese Medaka HdrR	MODERN SPECIES	17	CTCF (ENSORLG00000008771)	ENSORLG00000008751	vrk3 (ENSORLG00000008746)	rab27a (ENSORLG00000008731) #8	kif3a (ENSORLG00000008700)	pigb (ENSORLG00000008651) #10	ENSORLG00000008634	PRTG (ENSORLG00000008619) #15	ENSORLG00000021955 #16	ENSORLG00000022203 #16	ENSORLG00000008583 #18	ENSORLG00000008566 #19	ENSORLG00000024583	mns1 (ENSORLG00000008553) #20	ENSORLG00000008529	TCF12 (ENSORLG00000008508) #22	CGNL1 (ENSORLG00000008414) #24	MYZAP (ENSORLG00000022154) #25	polr2m (ENSORLG00000008354) ##25	aldh1a2 (ENSORLG00000008319) #26	aqp9b (ENSORLG00000008259)	lipca (ENSORLG00000008243) #29	adam10a (ENSORLG00000008215)	MINDY2 (ENSORLG00000008169) #31	sltm (ENSORLG00000008161) #32	rnf111 (ENSORLG00000008128) #33	MYO1E (ENSORLG00000008091) #35	mtmr10 (ENSORLG00000008018)	ENSORLG00000028821	ZNF821 (ENSORLG00000023237)	ap1g1 (ENSORLG00000007983)
Chinese medaka	MODERN SPECIES	888	tradd (ENSOSIG00000020040)	ogfod1 (ENSOSIG00000020063)	nudt21 (ENSOSIG00000020098)	CTCF (ENSOSIG00000020112)	ENSOSIG00000020115	vrk3 (ENSOSIG00000020126)	rab27a (ENSOSIG00000020128) #8	kif3a (ENSOSIG00000020166)	pigb (ENSOSIG00000020638) #10	ENSOSIG00000020641	PRTG (ENSOSIG00000020664) #15	nedd4a (ENSOSIG00000020766) #16	ENSOSIG00000022045 #18	TEX9 (ENSOSIG00000022052) #19	mns1 (ENSOSIG00000022061) #20	TCF12 (ENSOSIG00000022087) #22	CGNL1 (ENSOSIG00000022127) #24	MYZAP (ENSOSIG00000022132) #25	polr2m (ENSOSIG00000022134) ##25	aldh1a2 (ENSOSIG00000022158) #26	aqp9b (ENSOSIG00000022303)	lipca (ENSOSIG00000022329) #29	adam10a (ENSOSIG00000022391)	MINDY2 (ENSOSIG00000022487) #31	sltm (ENSOSIG00000022503) #32	rnf111 (ENSOSIG00000022522) #33	MYO1E (ENSOSIG00000022559) #35	ENSOSIG00000000728	mtmr10 (ENSOSIG00000000766)	ENSOSIG00000000988	ZNF821 (ENSOSIG00000000993)
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Aplocheiloidei	ANCESTRAL SPECIES	16	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000156672.o.a.e	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Mangrove rivulus	MODERN SPECIES	5	tradd (ENSKMAG00000008755)	ogfod1 (ENSKMAG00000008739)	nudt21 (ENSKMAG00000008705)	ENSKMAG00000008686	ENSKMAG00000008649	vrk3 (ENSKMAG00000008624)	rab27a (ENSKMAG00000008597) #8	pigb (ENSKMAG00000008583) #10	ENSKMAG00000008558	PRTG (ENSKMAG00000008528) #15	nedd4a (ENSKMAG00000008361) #16	ENSKMAG00000008288 #18	tex9 (ENSKMAG00000008246) #19	mns1 (ENSKMAG00000008206) #20	ENSKMAG00000008179	TCF12 (ENSKMAG00000008053) #22	CGNL1 (ENSKMAG00000007968) #24	MYZAP (ENSKMAG00000007928) #25	polr2m (ENSKMAG00000007908) ##25	aldh1a2 (ENSKMAG00000007864) #26	aqp9b (ENSKMAG00000007844)	lipca (ENSKMAG00000007823) #29	adam10a (ENSKMAG00000007739)	MINDY2 (ENSKMAG00000007681) #31	sltm (ENSKMAG00000007570) #32	rnf111 (ENSKMAG00000007489) #33	MYO1E (ENSKMAG00000007336) #35	mtmr10 (ENSKMAG00000007254)	ENSKMAG00000007244	ENSKMAG00000007223	ap1g1 (ENSKMAG00000007149)
Turquoise killifish	MODERN SPECIES	1616	GNAO1B (ENSNFUG00015008808)	TRADD (ENSNFUG00015008833)	nudt21 (ENSNFUG00015008954)	CTCF (ENSNFUG00015009020)	ENSNFUG00015009083	vrk3 (ENSNFUG00015009151)	RAB27A (ENSNFUG00015009264) #8	ENSNFUG00015009360	PRTG (ENSNFUG00015009405) #15	NEDD4 (ENSNFUG00015009490) #16	ENSNFUG00015009791 #18	ENSNFUG00015009806	TEX9 (ENSNFUG00015009815) #19	mns1 (ENSNFUG00015009828) #20	ENSNFUG00015009855	TCF12 (ENSNFUG00015009905) #22	CGNL1 (ENSNFUG00015010022) #24	ENSNFUG00015010410	MYZAP (ENSNFUG00015010418) #25	POLR2M (ENSNFUG00015010446) ##25	ENSNFUG00015010452	aldh1a2 (ENSNFUG00015010539) #26	AQP9 (ENSNFUG00015011783)	lipca (ENSNFUG00015011805) #29	adam10a (ENSNFUG00015011956)	MINDY2 (ENSNFUG00015014272) #31	SLTM (ENSNFUG00015014354) #32	RNF111 (ENSNFUG00015014454) #33	MYO1E (ENSNFUG00015014600) #35	ENSNFUG00015017970	mtmr10 (ENSNFUG00015017990)
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333.c #19	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Poecilia	ANCESTRAL SPECIES	4	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333.c #19	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
NAME_6	ANCESTRAL SPECIES	5	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333.c #19	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Amazon molly	MODERN SPECIES	613	tradd (ENSPFOG00000001400)	ogfod1 (ENSPFOG00000001410)	nudt21 (ENSPFOG00000001419)	ENSPFOG00000023608	CTCF (ENSPFOG00000001478)	ENSPFOG00000001597	vrk3 (ENSPFOG00000001687)	rab27a (ENSPFOG00000001824) #8	pigb (ENSPFOG00000001937) #10	ENSPFOG00000002041	PRTG (ENSPFOG00000002155) #15	nedd4a (ENSPFOG00000002640) #16	ENSPFOG00000002938 #18	tex9 (ENSPFOG00000003003) #19	ENSPFOG00000003138	TCF12 (ENSPFOG00000024249) #22	CGNL1 (ENSPFOG00000003311) #24	MYZAP (ENSPFOG00000003761) #25	polr2m (ENSPFOG00000023960) ##25	aldh1a2 (ENSPFOG00000004048) #26	aqp9b (ENSPFOG00000004301)
Sailfin molly	MODERN SPECIES	639									pigb (ENSPLAG00000013049) #10	ENSPLAG00000000300	PRTG (ENSPLAG00000013024) #15	nedd4a (ENSPLAG00000012978) #16	ENSPLAG00000012941 #18	tex9 (ENSPLAG00000012908) #19	ENSPLAG00000012894	TCF12 (ENSPLAG00000012880) #22
Guppy	MODERN SPECIES	455	ogfod1 (ENSPREG00000001314)	nudt21 (ENSPREG00000001285)	CTCF (ENSPREG00000001196)	ENSPREG00000001111	ENSPREG00000001080	vrk3 (ENSPREG00000001042)	rab27a (ENSPREG00000001018) #8	ENSPREG00000001011 #8	pigb (ENSPREG00000000965) #10	ENSPREG00000000921	PRTG (ENSPREG00000000837) #15	nedd4a (ENSPREG00000000589) #16	ENSPREG00000023255 #18	ENSPREG00000023254 #19	ENSPREG00000023253	TCF12 (ENSPREG00000023252) #22	CGNL1 (ENSPREG00000023249) #24	MYZAP (ENSPREG00000023247) #25	polr2m (ENSPREG00000023245) ##25	aldh1a2 (ENSPREG00000023242) #26	aqp9b (ENSPREG00000023241)	lipca (ENSPREG00000023240) #29	adam10a (ENSPREG00000023238)	MINDY2 (ENSPREG00000023237) #31	sltm (ENSPREG00000023236) #32	rnf111 (ENSPREG00000023233) #33	MYO1E (ENSPREG00000023226) #35	mtmr10 (ENSPREG00000023223)	ATXN1L (ENSPREG00000023222)	ZNF821 (ENSPREG00000023221)	ap1g1 (ENSPREG00000023220)
Platyfish	MODERN SPECIES	18	ogfod1 (ENSXMAG00000014150)	nudt21 (ENSXMAG00000014172)	CTCF (ENSXMAG00000014187)	ENSXMAG00000024523	vrk3 (ENSXMAG00000014232)	rab27a (ENSXMAG00000023955) #8	pigb (ENSXMAG00000014257) #10	ENSXMAG00000014277	PRTG (ENSXMAG00000014280) #15	ENSXMAG00000024145 #16	nedd4a (ENSXMAG00000024526) #16	ENSXMAG00000003651 #18	ENSXMAG00000022581 #19	TEX9 (ENSXMAG00000003668) #19	ENSXMAG00000003679	TCF12 (ENSXMAG00000014303) #22	CGNL1 (ENSXMAG00000014352) #24	MYZAP (ENSXMAG00000014372) #25	polr2m (ENSXMAG00000014379) ##25	aldh1a2 (ENSXMAG00000028442) #26	aqp9b (ENSXMAG00000006616)	lipca (ENSXMAG00000010306) #29	adam10a (ENSXMAG00000014437)	MINDY2 (ENSXMAG00000014456) #31	sltm (ENSXMAG00000014466) #32	rnf111 (ENSXMAG00000014476) #33	MYO1E (ENSXMAG00000006657) #35	mtmr10 (ENSXMAG00000006736)	ENSXMAG00000024044	ATXN1L (ENSXMAG00000022611)	ZNF821 (ENSXMAG00000026279)
NAME_4	ANCESTRAL SPECIES	6	ENSGT00940000154065.a	ENSGT00940000155883.a.b.a.b	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Mummichog	MODERN SPECIES	692	ENSFHEG00000019272	ddx21 (ENSFHEG00000019089)	rrp15 (ENSFHEG00000019028)	mpc1 (ENSFHEG00000019017)	kifbp (ENSFHEG00000019010)	ENSFHEG00000018965	rab27a (ENSFHEG00000018951) #8	pigb (ENSFHEG00000018928) #10	ENSFHEG00000018913	PRTG (ENSFHEG00000018894) #15	NEDD4 (ENSFHEG00000018822) #16	ENSFHEG00000018768 #18	ENSFHEG00000018753 #19	tex9 (ENSFHEG00000018744) #19	ENSFHEG00000018731	TCF12 (ENSFHEG00000018716) #22	CGNL1 (ENSFHEG00000018626) #24	MYZAP (ENSFHEG00000018606) #25	aldh1a2 (ENSFHEG00000018593) #26	aqp9b (ENSFHEG00000000816)	lipca (ENSFHEG00000018379) #29	adam10a (ENSFHEG00000018374)
Sheepshead minnow	MODERN SPECIES	671																TCF12 (ENSCVAG00000006103) #22	CGNL1 (ENSCVAG00000005983) #24	ENSCVAG00000005917 #25	polr2m (ENSCVAG00000005900) ##25	aldh1a2 (ENSCVAG00000005893) #26	aqp9b (ENSCVAG00000005853)	lipca (ENSCVAG00000005831) #29	adam10a (ENSCVAG00000005821)	MINDY2 (ENSCVAG00000000910) #31	sltm (ENSCVAG00000005773) #32	ENSCVAG00000005751 #32	rnf111 (ENSCVAG00000005725) #33	MYO1E (ENSCVAG00000005624) #35	mtmr10 (ENSCVAG00000005471)	ATXN1L (ENSCVAG00000005392)	ZNF821 (ENSCVAG00000000153)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Burton s mouthbrooder	MODERN SPECIES	377											nedd4a (ENSHBUG00000011635) #16	ENSHBUG00000011744 #18	tex9 (ENSHBUG00000011759) #19	mns1 (ENSHBUG00000011795) #20	ENSHBUG00000012105	TCF12 (ENSHBUG00000012211) #22	CGNL1 (ENSHBUG00000012240) #24	MYZAP (ENSHBUG00000012250) #25	polr2m (ENSHBUG00000012261) ##25	aldh1a2 (ENSHBUG00000012294) #26	aqp9b (ENSHBUG00000012306)	lipca (ENSHBUG00000012339) #29	adam10a (ENSHBUG00000012419)	MINDY2 (ENSHBUG00000012448) #31	sltm (ENSHBUG00000012461) #32	rnf111 (ENSHBUG00000012547) #33	MYO1E (ENSHBUG00000012739) #35	ENSHBUG00000012824	ZNF821 (ENSHBUG00000012845)	ap1g1 (ENSHBUG00000012877)	PHLPP2 (ENSHBUG00000012983)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Eastern happy	MODERN SPECIES		nudt21 (ENSACLG00000004389)	CTCF (ENSACLG00000004312)	ENSACLG00000004249	ENSACLG00000004232	vrk3 (ENSACLG00000004194)	rab27a (ENSACLG00000003987) #8	pigb (ENSACLG00000003835) #10	ENSACLG00000003805	PRTG (ENSACLG00000003720) #15	nedd4a (ENSACLG00000003621) #16	ENSACLG00000003607	ENSACLG00000003532 #18	tex9 (ENSACLG00000003513) #19	mns1 (ENSACLG00000003482) #20	ENSACLG00000003458	TCF12 (ENSACLG00000003321) #22	ENSACLG00000002984	CGNL1 (ENSACLG00000002931) #24	MYZAP (ENSACLG00000002908) #25	polr2m (ENSACLG00000002896) ##25	aldh1a2 (ENSACLG00000002839) #26	aqp9b (ENSACLG00000002830)	lipca (ENSACLG00000002773) #29	adam10a (ENSACLG00000002665)	MINDY2 (ENSACLG00000002610) #31	sltm (ENSACLG00000002523) #32	rnf111 (ENSACLG00000002489) #33	ENSACLG00000002428 #35	mtmr10 (ENSACLG00000002373)	ATXN1L (ENSACLG00000002367)	ZNF821 (ENSACLG00000002348)
Zebra mbuna	MODERN SPECIES	1091	gnao1b (ENSMZEG00005013095)	tradd (ENSMZEG00005013123)	ogfod1 (ENSMZEG00005013137)	nudt21 (ENSMZEG00005013153)	CTCF (ENSMZEG00005013162)	vrk3 (ENSMZEG00005013185)	rab27a (ENSMZEG00005013210) #8	pigb (ENSMZEG00005013246) #10	ENSMZEG00005013546	PRTG (ENSMZEG00005013563) #15	nedd4a (ENSMZEG00005013601) #16	ENSMZEG00005013628 #18	tex9 (ENSMZEG00005013638) #19	mns1 (ENSMZEG00005013644) #20	ENSMZEG00005013654	TCF12 (ENSMZEG00005013679) #22	CGNL1 (ENSMZEG00005013725) #24	MYZAP (ENSMZEG00005013752) #25	polr2m (ENSMZEG00005013761) ##25	aldh1a2 (ENSMZEG00005013774) #26	aqp9b (ENSMZEG00005013786)	lipca (ENSMZEG00005013803) #29	adam10a (ENSMZEG00005013810)	MINDY2 (ENSMZEG00005013829) #31	sltm (ENSMZEG00005013839) #32	rnf111 (ENSMZEG00005013855) #33	MYO1E (ENSMZEG00005013896) #35	mtmr10 (ENSMZEG00005013986)	ATXN1L (ENSMZEG00005014010)	ZNF821 (ENSMZEG00005014015)	ap1g1 (ENSMZEG00005014021)
P. nyererei	MODERN SPECIES	407	ENSPNYG00000014752	ENSPNYG00000014735	ENSPNYG00000014716	vrk3 (ENSPNYG00000014677)	rab27a (ENSPNYG00000014649) #8	pigb (ENSPNYG00000014620) #10	ENSPNYG00000014591	PRTG (ENSPNYG00000014547) #15	NEDD4 (ENSPNYG00000014513) #16	nedd4a (ENSPNYG00000014495) #16	ENSPNYG00000014441 #18	ENSPNYG00000014407	ENSPNYG00000014397 #19	mns1 (ENSPNYG00000014368) #20	ENSPNYG00000014296	TCF12 (ENSPNYG00000014233) #22	CGNL1 (ENSPNYG00000014186) #24	MYZAP (ENSPNYG00000014143) #25	polr2m (ENSPNYG00000014127) ##25	aldh1a2 (ENSPNYG00000014092) #26	aqp9b (ENSPNYG00000014017)	lipca (ENSPNYG00000013983) #29	adam10a (ENSPNYG00000013942)	MINDY2 (ENSPNYG00000013917) #31	sltm (ENSPNYG00000013893) #32	rnf111 (ENSPNYG00000013849) #33	ENSPNYG00000013794 #35	mtmr10 (ENSPNYG00000013732)	ATXN1L (ENSPNYG00000013703)	ZNF821 (ENSPNYG00000013683)	ap1g1 (ENSPNYG00000013608)
Lyretail cichlid	MODERN SPECIES	290	tradd (ENSNBRG00000009289)	ogfod1 (ENSNBRG00000009298)	nudt21 (ENSNBRG00000009313)	CTCF (ENSNBRG00000009340)	vrk3 (ENSNBRG00000009376)	rab27a (ENSNBRG00000009396) #8	pigb (ENSNBRG00000009428) #10	ENSNBRG00000009467	PRTG (ENSNBRG00000009483) #15	nedd4a (ENSNBRG00000009554) #16	ENSNBRG00000009602 #18	ENSNBRG00000009665	ENSNBRG00000009679 #19	mns1 (ENSNBRG00000009703) #20	ENSNBRG00000009775	TCF12 (ENSNBRG00000009935) #22	CGNL1 (ENSNBRG00000009999) #24	MYZAP (ENSNBRG00000010041) #25	polr2m (ENSNBRG00000010058) ##25	aldh1a2 (ENSNBRG00000010065) #26	aqp9b (ENSNBRG00000010077)	lipca (ENSNBRG00000010084) #29	adam10a (ENSNBRG00000010114)	MINDY2 (ENSNBRG00000010150) #31	sltm (ENSNBRG00000010183) #32	rnf111 (ENSNBRG00000010261) #33	MYO1E (ENSNBRG00000010346) #35	mtmr10 (ENSNBRG00000010423)	ATXN1L (ENSNBRG00000010469)	ZNF821 (ENSNBRG00000010474)	ap1g1 (ENSNBRG00000010504)
Nile tilapia	MODERN SPECIES		tradd (ENSONIG00000005732)	ogfod1 (ENSONIG00000030993)	nudt21 (ENSONIG00000005734)	CTCF (ENSONIG00000005736)	ENSONIG00000005738	vrk3 (ENSONIG00000005739)	rab27a (ENSONIG00000027701) #8	pigb (ENSONIG00000005742) #10	ENSONIG00000005746	PRTG (ENSONIG00000005750) #15	nedd4a (ENSONIG00000005755) #16	ENSONIG00000005780 #18	tex9 (ENSONIG00000005783) #19	mns1 (ENSONIG00000030431) #20	ENSONIG00000005792	TCF12 (ENSONIG00000005794) #22	CGNL1 (ENSONIG00000005801) #24	MYZAP (ENSONIG00000005808) #25	polr2m (ENSONIG00000005812) ##25	aldh1a2 (ENSONIG00000005813) #26	aqp9b (ENSONIG00000005825)	lipca (ENSONIG00000005832) #29	adam10a (ENSONIG00000005834)	MINDY2 (ENSONIG00000029481) #31	sltm (ENSONIG00000005838) #32	rnf111 (ENSONIG00000005845) #33	MYO1E (ENSONIG00000005848) #35	mtmr10 (ENSONIG00000005869)	ATXN1L (ENSONIG00000005873)	ZNF821 (ENSONIG00000042624)	ap1g1 (ENSONIG00000005876)
Midas cichlid	MODERN SPECIES	313	nudt21 (ENSACIG00000002809)	CTCF (ENSACIG00000002794)	ENSACIG00000002776	vrk3 (ENSACIG00000002723)	rab27a (ENSACIG00000002700) #8	pigb (ENSACIG00000002682) #10	ENSACIG00000002670	ccpg1 (ENSACIG00000002656)	PRTG (ENSACIG00000002604) #15	ENSACIG00000002572 #16	ENSACIG00000002513 #16	ENSACIG00000002486 #18	ENSACIG00000002478 #19	mns1 (ENSACIG00000002391) #20	ENSACIG00000002345	TCF12 (ENSACIG00000002309) #22	CGNL1 (ENSACIG00000002274) #24	ENSACIG00000002258	ENSACIG00000002205 #25	aldh1a2 (ENSACIG00000002181) #26	aqp9b (ENSACIG00000002162)	lipca (ENSACIG00000002140) #29	adam10a (ENSACIG00000002116)	MINDY2 (ENSACIG00000002088) #31	sltm (ENSACIG00000001971) #32	rnf111 (ENSACIG00000001923) #33	MYO1E (ENSACIG00000001861) #35	mtmr10 (ENSACIG00000001627)	ATXN1L (ENSACIG00000001605)	ZNF821 (ENSACIG00000001591)	ap1g1 (ENSACIG00000000958)
Pomacentridae	ANCESTRAL SPECIES	48	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	1946															ENSSPAG00000012435	ENSSPAG00000012445 #22	TCF12 (ENSSPAG00000012460) #22	CGNL1 (ENSSPAG00000012483) #24
Bicolor damselfish	MODERN SPECIES	1946														ENSSPAG00000012435	ENSSPAG00000012445 #22	TCF12 (ENSSPAG00000012460) #22	CGNL1 (ENSSPAG00000012483) #24
Pomacentridae_A	ANCESTRAL SPECIES	45	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000009477.s	ENSGT00390000005939.b	ENSGT00940000159421
Spiny chromis	MODERN SPECIES	1247										PRTG (ENSAPOG00000019400) #15	nedd4a (ENSAPOG00000019277) #16	ENSAPOG00000019236 #18	tex9 (ENSAPOG00000019191) #19	mns1 (ENSAPOG00000019182) #20	ENSAPOG00000019169	TCF12 (ENSAPOG00000019135) #22	CGNL1 (ENSAPOG00000019106) #24	MYZAP (ENSAPOG00000019089) #25	ENSAPOG00000019085
Amphiprion	ANCESTRAL SPECIES	62	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000009477.s	ENSGT00390000005939.b	ENSGT00940000159421
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES		ENSAPEG00000013511	CTCF (ENSAPEG00000013457)	nudt21 (ENSAPEG00000013434)	ogfod1 (ENSAPEG00000013362)	tradd (ENSAPEG00000013337)	gnao1b (ENSAPEG00000013306)	cog4 (ENSAPEG00000013243)	ENSAPEG00000013209	PRTG (ENSAPEG00000013157) #15	nedd4a (ENSAPEG00000012973) #16	ENSAPEG00000012909 #18	tex9 (ENSAPEG00000012899) #19	mns1 (ENSAPEG00000012808) #20	ENSAPEG00000012762	ENSAPEG00000012748	ENSAPEG00000012737 #22	TCF12 (ENSAPEG00000012692) #22	CGNL1 (ENSAPEG00000012637) #24	MYZAP (ENSAPEG00000012611) #25	polr2m (ENSAPEG00000012598) ##25	aldh1a2 (ENSAPEG00000012548) #26	aqp9b (ENSAPEG00000012537)	lipca (ENSAPEG00000012523) #29	adam10a (ENSAPEG00000012421)	MINDY2 (ENSAPEG00000012387) #31	sltm (ENSAPEG00000012366) #32	rnf111 (ENSAPEG00000012304) #33	MYO1E (ENSAPEG00000012148) #35	mtmr10 (ENSAPEG00000012048)	gas8 (ENSAPEG00000011982)	ATXN1L (ENSAPEG00000011967)
Orange clownfish	MODERN SPECIES		CTCF (ENSAPEG00000013457)	nudt21 (ENSAPEG00000013434)	ogfod1 (ENSAPEG00000013362)	tradd (ENSAPEG00000013337)	gnao1b (ENSAPEG00000013306)	cog4 (ENSAPEG00000013243)	ENSAPEG00000013209	PRTG (ENSAPEG00000013157) #15	nedd4a (ENSAPEG00000012973) #16	ENSAPEG00000012909 #18	tex9 (ENSAPEG00000012899) #19	mns1 (ENSAPEG00000012808) #20	ENSAPEG00000012762	ENSAPEG00000012748	ENSAPEG00000012737 #22	TCF12 (ENSAPEG00000012692) #22	CGNL1 (ENSAPEG00000012637) #24	MYZAP (ENSAPEG00000012611) #25	polr2m (ENSAPEG00000012598) ##25	aldh1a2 (ENSAPEG00000012548) #26	aqp9b (ENSAPEG00000012537)	lipca (ENSAPEG00000012523) #29	adam10a (ENSAPEG00000012421)	MINDY2 (ENSAPEG00000012387) #31	sltm (ENSAPEG00000012366) #32	rnf111 (ENSAPEG00000012304) #33	MYO1E (ENSAPEG00000012148) #35	mtmr10 (ENSAPEG00000012048)	gas8 (ENSAPEG00000011982)	ATXN1L (ENSAPEG00000011967)	ZNF821 (ENSAPEG00000011957)
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	1719																TCF12 (ENSAOCG00000003222) #22	CGNL1 (ENSAOCG00000003207) #24	MYZAP (ENSAOCG00000003186) #25	polr2m (ENSAOCG00000003183) ##25	aldh1a2 (ENSAOCG00000003176) #26	aqp9b (ENSAOCG00000003162)	lipca (ENSAOCG00000003157) #29	adam10a (ENSAOCG00000003153)
Clown anemonefish	MODERN SPECIES	1667	tradd (ENSAOCG00000004781)	ogfod1 (ENSAOCG00000004794)	nudt21 (ENSAOCG00000004820)	CTCF (ENSAOCG00000004869)	ENSAOCG00000004886	vrk3 (ENSAOCG00000004902)	rab27a (ENSAOCG00000004922) #8	pigb (ENSAOCG00000004971) #10	ENSAOCG00000000204	PRTG (ENSAOCG00000005032) #15	nedd4a (ENSAOCG00000005074) #16	ENSAOCG00000005116 #18	ENSAOCG00000005133 #19	mns1 (ENSAOCG00000005146) #20	ENSAOCG00000005171	ENSAOCG00000005187 #22
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00940000158898.g #26	ENSGT00940000179238	ENSGT00940000158898.h #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421
Fugu	MODERN SPECIES	4	tradd (ENSTRUG00000017973)	ogfod1 (ENSTRUG00000017959)	nudt21 (ENSTRUG00000017953)	CTCF (ENSTRUG00000017943)	ENSTRUG00000017941	vrk3 (ENSTRUG00000017935)	rab27a (ENSTRUG00000017930) #8	pigb (ENSTRUG00000017928) #10	ENSTRUG00000017926	PRTG (ENSTRUG00000017914) #15	nedd4a (ENSTRUG00000017899) #16	ENSTRUG00000028423 #18	TEX9 (ENSTRUG00000017895) #19	mns1 (ENSTRUG00000017889) #20	ENSTRUG00000020311	TCF12 (ENSTRUG00000017855) #22	ENSTRUG00000017834 #25	ENSTRUG00000020273	aldh1a2 (ENSTRUG00000017821) #26	aqp9b (ENSTRUG00000017812)	lipca (ENSTRUG00000017796) #29	adam10a (ENSTRUG00000017786)	MINDY2 (ENSTRUG00000017780) #31	sltm (ENSTRUG00000017767) #32	rnf111 (ENSTRUG00000017751) #33	MYO1E (ENSTRUG00000017723) #35	mtmr10 (ENSTRUG00000017705)	ATXN1L (ENSTRUG00000024580)	ZNF821 (ENSTRUG00000031464)	ap1g1 (ENSTRUG00000017672)	PHLPP2 (ENSTRUG00000017657)
Tetraodon	MODERN SPECIES	20	ogfod1 (ENSTNIG00000009311)	nudt21 (ENSTNIG00000009312)	ENSTNIG00000009313	CTCF (ENSTNIG00000009314)	ENSTNIG00000009315	vrk3 (ENSTNIG00000009316)	rab27a (ENSTNIG00000009317) #8	pigb (ENSTNIG00000009318) #10	ENSTNIG00000009319	PRTG (ENSTNIG00000009320) #15	nedd4a (ENSTNIG00000009321) #16	ENSTNIG00000009322 #18	tex9 (ENSTNIG00000009323) #19	mns1 (ENSTNIG00000009324) #20	ENSTNIG00000009325	TCF12 (ENSTNIG00000009326) #22	CGNL1 (ENSTNIG00000009327) #24	MYZAP (ENSTNIG00000009328) #25	aldh1a2 (ENSTNIG00000009329) #26	aqp9b (ENSTNIG00000009330)	lipca (ENSTNIG00000009331) #29	adam10a (ENSTNIG00000009332)	MINDY2 (ENSTNIG00000009333) #31	sltm (ENSTNIG00000009334) #32	rnf111 (ENSTNIG00000009335) #33	MYO1E (ENSTNIG00000009336) #35	mtmr10 (ENSTNIG00000009337)	ZNF821 (ENSTNIG00000009338)	ap1g1 (ENSTNIG00000009339)	PHLPP2 (ENSTNIG00000009340)	marveld3 (ENSTNIG00000009341)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1006															ENSLBEG00000026615	ENSLBEG00000026542 #22
Ballan wrasse	MODERN SPECIES	17	ogfod1 (ENSLBEG00000024421)	nudt21 (ENSLBEG00000024494)	CTCF (ENSLBEG00000024534)	ENSLBEG00000024589	vrk3 (ENSLBEG00000024633)	rab27a (ENSLBEG00000024673) #8	pigb (ENSLBEG00000024702) #10	ENSLBEG00000024746	PRTG (ENSLBEG00000024767) #15	ENSLBEG00000024818 #16	ENSLBEG00000024827 #16	ENSLBEG00000024856 #18	tex9 (ENSLBEG00000024899) #19	mns1 (ENSLBEG00000024941) #20	ENSLBEG00000024978	TCF12 (ENSLBEG00000025055) #22	CGNL1 (ENSLBEG00000025160) #24	MYZAP (ENSLBEG00000025210) #25	polr2m (ENSLBEG00000025232) ##25	aldh1a2 (ENSLBEG00000025272) #26	aqp9b (ENSLBEG00000025328)	lipca (ENSLBEG00000025344) #29	adam10a (ENSLBEG00000025376)	MINDY2 (ENSLBEG00000025431) #31	sltm (ENSLBEG00000025472) #32	rnf111 (ENSLBEG00000025596) #33	MYO1E (ENSLBEG00000025760) #35	mtmr10 (ENSLBEG00000025881)	ENSLBEG00000025931	ZNF821 (ENSLBEG00000025947)	ap1g1 (ENSLBEG00000025984)
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000156672.o.b	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000156672.o.b	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
European seabass	MODERN SPECIES	18	ENSDLAG00005027316	ENSDLAG00005011893	ENSDLAG00005011879	ENSDLAG00005012028	ENSDLAG00005012032	rab27a (ENSDLAG00005034939) #8	ENSDLAG00005031366	pigb (ENSDLAG00005012074) #10	ENSDLAG00005012090	PRTG (ENSDLAG00005012105) #15	NEDD4 (ENSDLAG00005012129) #16	ENSDLAG00005012271 #18	TEX9 (ENSDLAG00005012341) #19	ENSDLAG00005012383	ENSDLAG00005012421	TCF12 (ENSDLAG00005012447) #22	CGNL1 (ENSDLAG00005013102) #24	MYZAP (ENSDLAG00005013205) #25	polr2m (ENSDLAG00005013225) ##25	aldh1a2 (ENSDLAG00005013255) #26	aqp9b (ENSDLAG00005013763)	lipca (ENSDLAG00005013776) #29	adam10a (ENSDLAG00005013914)	MINDY2 (ENSDLAG00005028323) #31	sltm (ENSDLAG00005015418) #32	rnf111 (ENSDLAG00005015462) #33	ENSDLAG00005015501 #35	ENSDLAG00005015930	ENSDLAG00005027066	ENSDLAG00005016490	ap1g1 (ENSDLAG00005016553)
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005016978	ENSLCRG00005016976	ENSLCRG00005016973	vrk3 (ENSLCRG00005016970)	rab27a (ENSLCRG00005016969) #8	ENSLCRG00005016966	pigb (ENSLCRG00005016965) #10	ENSLCRG00005016964	PRTG (ENSLCRG00005016954) #15	nedd4a (ENSLCRG00005016752) #16	ENSLCRG00005016741 #18	tex9 (ENSLCRG00005016740) #19	mns1 (ENSLCRG00005016737) #20	ENSLCRG00005016734	ENSLCRG00005016731	TCF12 (ENSLCRG00005016681) #22	CGNL1 (ENSLCRG00005016675) #24	MYZAP (ENSLCRG00005016673) #25	polr2m (ENSLCRG00005016672) ##25	aldh1a2 (ENSLCRG00005013302) #26	aqp9b (ENSLCRG00005013275)	lipca (ENSLCRG00005013272) #29	adam10a (ENSLCRG00005013143)	MINDY2 (ENSLCRG00005013131) #31	sltm (ENSLCRG00005013119) #32	rnf111 (ENSLCRG00005013108) #33	MYO1E (ENSLCRG00005009209) #35	ENSLCRG00005009176	mtmr10 (ENSLCRG00005008603)	ENSLCRG00005008595	ap1g1 (ENSLCRG00005008468)
Gilthead seabream	MODERN SPECIES	18	ogfod1 (ENSSAUG00010025796)	nudt21 (ENSSAUG00010025792)	CTCF (ENSSAUG00010025788)	ENSSAUG00010025785	vrk3 (ENSSAUG00010025784)	rab27a (ENSSAUG00010025783) #8	pigb (ENSSAUG00010025781) #10	ENSSAUG00010025780	PRTG (ENSSAUG00010025777) #15	nedd4a (ENSSAUG00010025760) #16	ENSSAUG00010025758 #18	tex9 (ENSSAUG00010025757) #19	mns1 (ENSSAUG00010025756) #20	ENSSAUG00010025755	ENSSAUG00010025754	TCF12 (ENSSAUG00010025706) #22	CGNL1 (ENSSAUG00010025694) #24	MYZAP (ENSSAUG00010025692) #25	polr2m (ENSSAUG00010025691) ##25	aldh1a2 (ENSSAUG00010024087) #26	aqp9b (ENSSAUG00010024069)	lipca (ENSSAUG00010024067) #29	adam10a (ENSSAUG00010023961)	MINDY2 (ENSSAUG00010023955) #31	sltm (ENSSAUG00010023952) #32	rnf111 (ENSSAUG00010023950) #33	MYO1E (ENSSAUG00010022870) #35	mtmr10 (ENSSAUG00010022630)	ENSSAUG00010022624	ZNF821 (ENSSAUG00010022620)	ap1g1 (ENSSAUG00010022507)
Perciformes	ANCESTRAL SPECIES	15	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Lumpfish	MODERN SPECIES	18	ogfod1 (ENSCLMG00005022342)	nudt21 (ENSCLMG00005022340)	CTCF (ENSCLMG00005022339)	vrk3 (ENSCLMG00005022337)	ENSCLMG00005022336	rab27a (ENSCLMG00005022335) #8	pigb (ENSCLMG00005022327) #10	ENSCLMG00005022323	PRTG (ENSCLMG00005022321) #15	nedd4a (ENSCLMG00005022293) #16	ENSCLMG00005022289 #18	ENSCLMG00005022288	ENSCLMG00005022287	mns1 (ENSCLMG00005022286) #20	ENSCLMG00005022285	TCF12 (ENSCLMG00005022282) #22	CGNL1 (ENSCLMG00005022280) #24	ENSCLMG00005022279 #25	polr2m (ENSCLMG00005022278) ##25	aldh1a2 (ENSCLMG00005022266) #26	aqp9b (ENSCLMG00005022264)	lipca (ENSCLMG00005022263) #29	adam10a (ENSCLMG00005021806)	MINDY2 (ENSCLMG00005021775) #31	sltm (ENSCLMG00005021774) #32	rnf111 (ENSCLMG00005021772) #33	MYO1E (ENSCLMG00005021021) #35	mtmr10 (ENSCLMG00005020981)	ATXN1L (ENSCLMG00005020977)	ZNF821 (ENSCLMG00005020976)	ap1g1 (ENSCLMG00005020873)
Stickleback	MODERN SPECIES	1	nudt21 (ENSGACG00000015869)	ENSGACG00000015868	CTCF (ENSGACG00000015865)	ENSGACG00000015863	ENSGACG00000015861	vrk3 (ENSGACG00000015858)	rab27a (ENSGACG00000015855) #8	pigb (ENSGACG00000015853) #10	ENSGACG00000015850	PRTG (ENSGACG00000015845) #15	nedd4a (ENSGACG00000015840) #16	ENSGACG00000015838 #18	tex9 (ENSGACG00000015835) #19	mns1 (ENSGACG00000015833) #20	ENSGACG00000015832	TCF12 (ENSGACG00000015831) #22	CGNL1 (ENSGACG00000015830) #24	MYZAP (ENSGACG00000015829) #25	aldh1a2 (ENSGACG00000015825) #26	aqp9b (ENSGACG00000015823)	lipca (ENSGACG00000015821) #29	adam10a (ENSGACG00000015819)	MINDY2 (ENSGACG00000015817) #31	ENSGACG00000015816	sltm (ENSGACG00000015814) #32	rnf111 (ENSGACG00000015811) #33	MYO1E (ENSGACG00000015802) #35	mtmr10 (ENSGACG00000015799)	ZNF821 (ENSGACG00000015798)	ap1g1 (ENSGACG00000015795)	PHLPP2 (ENSGACG00000015791)
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Pike perch	MODERN SPECIES	29	ENSSLUG00000023831	CTCF (ENSSLUG00000023790)	ENSSLUG00000023772	vrk3 (ENSSLUG00000023751)	rab27a (ENSSLUG00000023737) #8	pigb (ENSSLUG00000023726) #10	ENSSLUG00000023717	ENSSLUG00000023713	PRTG (ENSSLUG00000023693) #15	ENSSLUG00000023687	nedd4a (ENSSLUG00000021460) #16	ENSSLUG00000021326 #18	tex9 (ENSSLUG00000021319) #19	mns1 (ENSSLUG00000021309) #20	ENSSLUG00000021302	TCF12 (ENSSLUG00000021263) #22	CGNL1 (ENSSLUG00000021247) #24	MYZAP (ENSSLUG00000021241) #25	polr2m (ENSSLUG00000021237) ##25	aldh1a2 (ENSSLUG00000018859) #26	aqp9b (ENSSLUG00000018676)	lipca (ENSSLUG00000018668) #29	adam10a (ENSSLUG00000016025)	MINDY2 (ENSSLUG00000015848) #31	sltm (ENSSLUG00000015815) #32	rnf111 (ENSSLUG00000015792) #33
Channel bull blenny	MODERN SPECIES	17	nudt21 (ENSCGOG00000017055)	CTCF (ENSCGOG00000016758)	ENSCGOG00000016752	vrk3 (ENSCGOG00000016749)	rab27a (ENSCGOG00000016743) #8	pigb (ENSCGOG00000016730) #10	ENSCGOG00000016724	PRTG (ENSCGOG00000016706) #15	nedd4a (ENSCGOG00000013839) #16	ENSCGOG00000013765 #18	tex9 (ENSCGOG00000013758) #19	mns1 (ENSCGOG00000013716) #20	ENSCGOG00000013713	ENSCGOG00000013712	ENSCGOG00000013707	TCF12 (ENSCGOG00000013204) #22	CGNL1 (ENSCGOG00000013174) #24	MYZAP (ENSCGOG00000013164) #25	polr2m (ENSCGOG00000013156) ##25	aldh1a2 (ENSCGOG00000006033) #26	aqp9b (ENSCGOG00000005936)	lipca (ENSCGOG00000005928) #29	adam10a (ENSCGOG00000004376)	MINDY2 (ENSCGOG00000004257) #31	sltm (ENSCGOG00000004210) #32	rnf111 (ENSCGOG00000004042) #33	MYO1E (ENSCGOG00000001564) #35	mtmr10 (ENSCGOG00000001224)	ENSCGOG00000001209	ZNF821 (ENSCGOG00000001207)	ap1g1 (ENSCGOG00000000730)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00740000117210	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00980000202305	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Climbing perch	MODERN SPECIES	16	ogfod1 (ENSATEG00000002298)	ENSATEG00000002304	ENSATEG00000002334	ENSATEG00000002340	ENSATEG00000002382	rab27a (ENSATEG00000002392) #8	ENSATEG00000028722	pigb (ENSATEG00000002415) #10	ENSATEG00000002550	PRTG (ENSATEG00000002562) #15	NEDD4 (ENSATEG00000002651) #16	ENSATEG00000002665 #18	MNS1 (ENSATEG00000002710) #20	ENSATEG00000002821	ENSATEG00000002827	TCF12 (ENSATEG00000002848) #22	CGNL1 (ENSATEG00000002955) #24	MYZAP (ENSATEG00000002979) #25	polr2m (ENSATEG00000025832) ##25	aldh1a2 (ENSATEG00000003008) #26	aqp9b (ENSATEG00000003077)	lipca (ENSATEG00000003328) #29	adam10a (ENSATEG00000003639)	MINDY2 (ENSATEG00000003720) #31	sltm (ENSATEG00000003763) #32	RNF111 (ENSATEG00000003774) #33	ENSATEG00000003859 #35	ENSATEG00000003975	ENSATEG00000004057	ZNF821 (ENSATEG00000004069)	ap1g1 (ENSATEG00000004089)
Siamese fighting fish	MODERN SPECIES	14	tradd (ENSBSLG00000005932)	ogfod1 (ENSBSLG00000005944)	nudt21 (ENSBSLG00000005985)	ENSBSLG00000006003	ENSBSLG00000006006	vrk3 (ENSBSLG00000006011)	ENSBSLG00000006015	rab27a (ENSBSLG00000006016) #8	ENSBSLG00000006028	PRTG (ENSBSLG00000006036) #15	nedd4a (ENSBSLG00000006059) #16	ENSBSLG00000006184	tex9 (ENSBSLG00000006188) #19	mns1 (ENSBSLG00000006194) #20	ENSBSLG00000006204	TCF12 (ENSBSLG00000006235) #22	CGNL1 (ENSBSLG00000007580) #24	MYZAP (ENSBSLG00000007590) #25	polr2m (ENSBSLG00000007603) ##25	aldh1a2 (ENSBSLG00000007671) #26	aqp9b (ENSBSLG00000011541)	lipca (ENSBSLG00000011552) #29	adam10a (ENSBSLG00000011624)	MINDY2 (ENSBSLG00000012487) #31	sltm (ENSBSLG00000012508) #32	rnf111 (ENSBSLG00000012575) #33	MYO1E (ENSBSLG00000012610) #35	mtmr10 (ENSBSLG00000012690)	ATXN1L (ENSBSLG00000012951)	ZNF821 (ENSBSLG00000012954)	ap1g1 (ENSBSLG00000012967)
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000020936	ENSMAMG00000020940	vrk3 (ENSMAMG00000020944)	rab27a (ENSMAMG00000020948) #8	ENSMAMG00000027059	pigb (ENSMAMG00000020951) #10	ENSMAMG00000028629	ENSMAMG00000020961	PRTG (ENSMAMG00000020967) #15	NEDD4 (ENSMAMG00000020979) #16	ENSMAMG00000028425 #18	TEX9 (ENSMAMG00000020996) #19	MNS1 (ENSMAMG00000021005) #20	ENSMAMG00000021018	ENSMAMG00000021023	TCF12 (ENSMAMG00000021031) #22	CGNL1 (ENSMAMG00000021046) #24	MYZAP (ENSMAMG00000021061) #25	polr2m (ENSMAMG00000021065) ##25	aldh1a2 (ENSMAMG00000021069) #26	aqp9b (ENSMAMG00000021080)	lipca (ENSMAMG00000021087) #29	adam10a (ENSMAMG00000021384)	MINDY2 (ENSMAMG00000021387) #31	sltm (ENSMAMG00000021391) #32	RNF111 (ENSMAMG00000021395) #33	ENSMAMG00000021406 #35	ENSMAMG00000021426	ENSMAMG00000021437	ENSMAMG00000021440	ap1g1 (ENSMAMG00000021446)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000155112.A.d	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Seriola	ANCESTRAL SPECIES	13	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000177219.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Greater amberjack	MODERN SPECIES	1	ogfod1 (ENSSDUG00000019024)	nudt21 (ENSSDUG00000019001)	ENSSDUG00000018954	CTCF (ENSSDUG00000018894)	vrk3 (ENSSDUG00000018860)	rab27a (ENSSDUG00000018831) #8	pigb (ENSSDUG00000018798) #10	ENSSDUG00000018780	PRTG (ENSSDUG00000018702) #15	nedd4a (ENSSDUG00000018653) #16	ENSSDUG00000018633 #18	tex9 (ENSSDUG00000018593) #19	mns1 (ENSSDUG00000018617) #20	ENSSDUG00000018572	ENSSDUG00000018553	TCF12 (ENSSDUG00000018418) #22	CGNL1 (ENSSDUG00000018352) #24	MYZAP (ENSSDUG00000018308) #25	polr2m (ENSSDUG00000018292) ##25	aldh1a2 (ENSSDUG00000018265) #26	aqp9b (ENSSDUG00000018252)	lipca (ENSSDUG00000018237) #29	adam10a (ENSSDUG00000018193)	MINDY2 (ENSSDUG00000018166) #31	sltm (ENSSDUG00000018134) #32	rnf111 (ENSSDUG00000018025) #33	MYO1E (ENSSDUG00000017859) #35	mtmr10 (ENSSDUG00000017735)	ATXN1L (ENSSDUG00000017726)	ZNF821 (ENSSDUG00000017711)	ap1g1 (ENSSDUG00000017665)
Yellowtail amberjack	MODERN SPECIES	2326											ENSSLDG00000013148 #18	tex9 (ENSSLDG00000013108) #19	mns1 (ENSSLDG00000013086) #20	ENSSLDG00000013052	ENSSLDG00000013015	TCF12 (ENSSLDG00000012970) #22	CGNL1 (ENSSLDG00000012919) #24	MYZAP (ENSSLDG00000012887) #25	polr2m (ENSSLDG00000012871) ##25
Barramundi perch	MODERN SPECIES	107	CTCF (ENSLCAG00010002143)	ENSLCAG00010002134	ENSLCAG00010002115	vrk3 (ENSLCAG00010002102)	RAB27A (ENSLCAG00010002092) #8	pigb (ENSLCAG00010002080) #10	ENSLCAG00010002074	PRTG (ENSLCAG00010002058) #15	nedd4a (ENSLCAG00010001064) #16	ENSLCAG00010000828 #18	tex9 (ENSLCAG00010000813) #19	mns1 (ENSLCAG00010000803) #20	ENSLCAG00010000789	ENSLCAG00010000779	ENSLCAG00010000775	ENSLCAG00010000685 #22	CGNL1 (ENSLCAG00010000554) #24	MYZAP (ENSLCAG00010000533) #25	polr2m (ENSLCAG00010000521) ##25	ENSLCAG00010000516	ENSLCAG00010000507	ENSLCAG00010000495	ENSLCAG00010000461	ENSLCAG00010000430	ANO9 (ENSLCAG00010000409)	spg21 (ENSLCAG00010000371)	pdcd7 (ENSLCAG00010000335)	ENSLCAG00010000325	KBTBD13 (ENSLCAG00010000318)	rasl12 (ENSLCAG00010000309)	uqcrfs1 (ENSLCAG00010000298)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00390000002016	ENSGT00390000002349	ENSGT00390000015814.jc	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421	ENSGT00950000182838.B.a.a
Tongue sole	MODERN SPECIES	20		CTCF (ENSCSEG00000018799)	ENSCSEG00000018818	ENSCSEG00000018832	vrk3 (ENSCSEG00000018841)	rab27a (ENSCSEG00000018850) #8	ENSCSEG00000018858	pigb (ENSCSEG00000018860) #10	ENSCSEG00000018872	PRTG (ENSCSEG00000018896) #15	nedd4a (ENSCSEG00000018946) #16	ENSCSEG00000018971 #18	tex9 (ENSCSEG00000018980) #19	ENSCSEG00000018989	ENSCSEG00000018996	TCF12 (ENSCSEG00000019074) #22	CGNL1 (ENSCSEG00000019127) #24	ENSCSEG00000019136 #25	polr2m (ENSCSEG00000019146) ##25	aldh1a2 (ENSCSEG00000019151) #26	aqp9b (ENSCSEG00000019167)	lipca (ENSCSEG00000019171) #29	socs4 (ENSCSEG00000019179)	dennd4a (ENSCSEG00000019190)	SLC24A1 (ENSCSEG00000019249)	HACD3 (ENSCSEG00000019267)	slc22a18 (ENSCSEG00000019279)	NR2E3 (ENSCSEG00000019282)	ENSCSEG00000019294	ENSCSEG00000019314	mpped2a (ENSCSEG00000019316)
Turbot	MODERN SPECIES	17	ENSSMAG00000000646	ENSSMAG00000000644	ENSSMAG00000000626	vrk3 (ENSSMAG00000000611)	RAB27A (ENSSMAG00000000607) #8	PIGB (ENSSMAG00000000599) #10	ENSSMAG00000000589	PRTG (ENSSMAG00000000560) #15	NEDD4 (ENSSMAG00000000533) #16	ENSSMAG00000000518 #18	TEX9 (ENSSMAG00000000506) #19	MNS1 (ENSSMAG00000000477) #20	MNS1 (ENSSMAG00000000493) #20	ENSSMAG00000000449	ENSSMAG00000025877	TCF12 (ENSSMAG00000000428) #22	CGNL1 (ENSSMAG00000000414) #24	MYZAP (ENSSMAG00000000406) #25	polr2m (ENSSMAG00000000402) ##25	aldh1a2 (ENSSMAG00000000392) #26	aqp9b (ENSSMAG00000000389)	lipca (ENSSMAG00000000384) #29	adam10a (ENSSMAG00000000377)	MINDY2 (ENSSMAG00000000363) #31	sltm (ENSSMAG00000000355) #32	rnf111 (ENSSMAG00000000341) #33	ENSSMAG00000000273 #35	ENSSMAG00000000245	ENSSMAG00000034656	ENSSMAG00000023693	ap1g1 (ENSSMAG00000000204)
Tiger tail seahorse	MODERN SPECIES	348	CTCF (ENSHCOG00000004341)	ENSHCOG00000004324	vrk3 (ENSHCOG00000004273)	rab27a (ENSHCOG00000004250) #8	pigb (ENSHCOG00000004240) #10	ENSHCOG00000004218	pigb (ENSHCOG00000004204) #10	ENSHCOG00000004150	PRTG (ENSHCOG00000004136) #15	nedd4a (ENSHCOG00000004105) #16	ENSHCOG00000004028 #18	ENSHCOG00000004015	tex9 (ENSHCOG00000004000) #19	mns1 (ENSHCOG00000003980) #20	ENSHCOG00000003916	TCF12 (ENSHCOG00000003699) #22	CGNL1 (ENSHCOG00000003668) #24	MYZAP (ENSHCOG00000003644) #25	polr2m (ENSHCOG00000003633) ##25	aldh1a2 (ENSHCOG00000003615) #26	aqp9b (ENSHCOG00000003574)	lipca (ENSHCOG00000003489) #29	adam10a (ENSHCOG00000003469)	MINDY2 (ENSHCOG00000003414) #31	sltm (ENSHCOG00000003395) #32	rnf111 (ENSHCOG00000003380) #33	ENSHCOG00000003366 #35	mtmr10 (ENSHCOG00000003320)	ATXN1L (ENSHCOG00000003302)	ZNF821 (ENSHCOG00000003296)	ap1g1 (ENSHCOG00000003280)
Pinecone sodierfish	MODERN SPECIES	17	TEAD1 (ENSMMDG00005017864)	ENSMMDG00005017855	dkk3a (ENSMMDG00005017850)	usp47 (ENSMMDG00005013495)	CLEC3A (ENSMMDG00005013424)	vat1l (ENSMMDG00005013422)	bola3 (ENSMMDG00005013420)	ENSMMDG00005013413	ENSMMDG00005013408	kars1 (ENSMMDG00005013377)	gcshb (ENSMMDG00005013367)	ENSMMDG00005013364 #18	tex9 (ENSMMDG00005013362) #19	mns1 (ENSMMDG00005013345) #20	ENSMMDG00005013340	tcf12 (ENSMMDG00005012317) #22	CGNL1 (ENSMMDG00005012301) #24	MYZAP (ENSMMDG00005012297) #25	polr2m (ENSMMDG00005012293) ##25	aldh1a2 (ENSMMDG00005012285) #26	aqp9b (ENSMMDG00005012280)	lipca (ENSMMDG00005011447) #29	adam10a (ENSMMDG00005011074)	MINDY2 (ENSMMDG00005011065) #31	sltm (ENSMMDG00005011045) #32	rnf111 (ENSMMDG00005011038) #33	MYO1E (ENSMMDG00005002950) #35	mtmr10 (ENSMMDG00005002339)	ATXN1L (ENSMMDG00005002334)	ZNF821 (ENSMMDG00005002332)	ap1g1 (ENSMMDG00005001432)
Clupeocephala	ANCESTRAL SPECIES	261					ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b
Otomorpha	ANCESTRAL SPECIES	136	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b.c	ENSGT00940000164955.b	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00530000063301.a.b	ENSGT00940000175785	ENSGT00950000183187.A
Clupeiformes	ANCESTRAL SPECIES	34	ENSGT00940000159837	ENSGT00730000111696.b	ENSGT00990000203615.a.a.a.a	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b.c	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b	ENSGT00390000004985.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00530000063301.a.b	ENSGT00950000183187.A
Denticle herring	MODERN SPECIES	8	PHF21A (ENSDCDG00000028899)	PRDM11 (ENSDCDG00000028913)	ENSDCDG00000028914	ENSDCDG00000028919	BET1L (ENSDCDG00000028921)	deaf1 (ENSDCDG00000028922)	drd4a (ENSDCDG00000028923)	GLDN (ENSDCDG00000028925)	CYP19A1 (ENSDCDG00000028928)	AP4E1 (ENSDCDG00000028986)	MYO5C (ENSDCDG00000029048)	rsl24d1 (ENSDCDG00000030553) #7	ENSDCDG00000030559 ##15	RFX7 (ENSDCDG00000030565) #18	ENSDCDG00000030566 #22	ENSDCDG00000030567 #22	ENSDCDG00000030570 #24	ENSDCDG00000030571	LIPC (ENSDCDG00000030587) #29	ENSDCDG00000030856	ENSDCDG00000031205	fan1 (ENSDCDG00000031216)	ENSDCDG00000031282	DUOXA2 (ENSDCDG00000031289)	ENSDCDG00000031314	TJP1 (ENSDCDG00000031679)	ENSDCDG00000034464	cops2 (ENSDCDG00000034467)	galk2 (ENSDCDG00000034476)	ATP8B4 (ENSDCDG00000034517)	sqor (ENSDCDG00000034865)
Atlantic herring	MODERN SPECIES	19	ENSCHAG00000018591	ENSCHAG00000018571	BET1L (ENSCHAG00000018545)	deaf1 (ENSCHAG00000018539)	drd4a (ENSCHAG00000018437)	ENSCHAG00000018399	ENSCHAG00000018369	CYP19A1 (ENSCHAG00000017517)	AP4E1 (ENSCHAG00000016871)	gnb5a (ENSCHAG00000016224)	MYO5C (ENSCHAG00000015463)	ENSCHAG00000009176	rsl24d1 (ENSCHAG00000008996) #7	ENSCHAG00000008770 ##15	RFX7 (ENSCHAG00000008737) #18	ENSCHAG00000008721 #22	ENSCHAG00000008713	ENSCHAG00000008701	LIPC (ENSCHAG00000008694) #29	ENSCHAG00000003856	ENSCHAG00000003675	fan1 (ENSCHAG00000003513)	ENSCHAG00000003409	DUOXA2 (ENSCHAG00000003263)	ENSCHAG00000002026	ENSCHAG00000001954	TJP1 (ENSCHAG00000000494)	ENSCHAG00000000150	ENSCHAG00000013243	ENSCHAG00000012979	cops2 (ENSCHAG00000012891)
Otophysi	ANCESTRAL SPECIES	31	ENSGT00940000164138	ENSGT00400000022240	ENSGT00940000157859.a.b	ENSGT01030000234534.B.a.b.a.a	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000164099.a.b	ENSGT00390000008748.b.g.a	ENSGT00940000159572.a.b	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b
Characiphysae	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a.b.b	ENSGT00940000155465.j	ENSGT00940000164138	ENSGT01030000234534.B.a.b.a.a	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000164099.a.b	ENSGT00390000008748.b.g.a	ENSGT00940000159572.a.b	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b	ENSGT00940000155025.A	ENSGT00940000154738.a.q	ENSGT00940000155419.c.a	ENSGT00940000155915.a	ENSGT00950000183062.a.a.b.b.b	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.l	ENSGT00390000016228.a.b	ENSGT00940000157529.i.a	ENSGT00940000158636	ENSGT00940000158792
Channel catfish	MODERN SPECIES	5	ppm1h (ENSIPUG00000012276)	AVPR1A (ENSIPUG00000012348)	ENSIPUG00000012366	fem1b (ENSIPUG00000012465)	ENSIPUG00000012481	fam96a (ENSIPUG00000012490)	spg11 (ENSIPUG00000012510)	ENSIPUG00000012666	ENSIPUG00000012742	znf609a (ENSIPUG00000012762)	ENSIPUG00000012815	myo9ab (ENSIPUG00000012888)	rsl24d1 (ENSIPUG00000013285) #7	ENSIPUG00000013326 ##15	RFX7 (ENSIPUG00000013355) #18	ENSIPUG00000013380 #22	ENSIPUG00000013400 #24	ENSIPUG00000013471	Lipc (ENSIPUG00000013831) #29	ADAM10 (ENSIPUG00000013864)	ENSIPUG00000013927	pnpla8 (ENSIPUG00000013951)	nrcam (ENSIPUG00000013993)	CNTN1 (ENSIPUG00000014406)	PDZRN4 (ENSIPUG00000014505)	gxylt1 (ENSIPUG00000014524)	yaf2 (ENSIPUG00000014560)	prickle1 (ENSIPUG00000014577)	ENSIPUG00000014612	adamts20 (ENSIPUG00000014644)	irak4 (ENSIPUG00000014731)
Characiphysae_b	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a.b.b	ENSGT00940000155465.j	ENSGT00940000164138	ENSGT01030000234518.B.a.b.b	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000164099.a.b	ENSGT00390000008748.b.g.a	ENSGT00940000159572.a.b	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b	ENSGT00940000155025.A	ENSGT00940000154738.a.q	ENSGT00940000155419.c.a	ENSGT00940000155915.a	ENSGT00950000183062.a.a.b.b.b	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.l	ENSGT00390000016228.a.b	ENSGT00940000157529.i.a	ENSGT00940000158636	ENSGT00940000158792
Characoidei	ANCESTRAL SPECIES	4					ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000164099.a.b	ENSGT00390000008748.b.g.a	ENSGT00940000159572.a.b	ENSGT00940000154905.i.b	ENSGT00950000183105.B #7	ENSGT00390000012715.e	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000157602.f #29	ENSGT00940000164516.b	ENSGT00940000155025.A	ENSGT00940000154738.a.q	ENSGT00940000155419.c.a	ENSGT00940000155915.a	ENSGT00950000183062.a.a.b.b.b	ENSGT00940000156242.c.a	ENSGT00390000013995.b.b.l	ENSGT00390000016228.a.b	ENSGT00940000157529.i.a	ENSGT00940000158636	ENSGT00940000158792
Red-bellied piranha	MODERN SPECIES	61										ENSPNAG00000019109	myo9ab (ENSPNAG00000019086)	rsl24d1 (ENSPNAG00000018978) #7	ENSPNAG00000018956	ENSPNAG00000005846 ##15	RFX7 (ENSPNAG00000018928) #18	ENSPNAG00000018916 #22	ENSPNAG00000018910 #24	ENSPNAG00000018896	ENSPNAG00000018889 #29	ENSPNAG00000018853	ENSPNAG00000018762	ENSPNAG00000007056	NRCAM (ENSPNAG00000018713)	CNTN1 (ENSPNAG00000018336)	PDZRN4 (ENSPNAG00000018179)	GXYLT1 (ENSPNAG00000018139)	YAF2 (ENSPNAG00000018088)	PPHLN1 (ENSPNAG00000018068)	prickle1a (ENSPNAG00000018061)	ADAMTS20 (ENSPNAG00000018037)	irak4 (ENSPNAG00000017853)
Mexicana tetra	MODERN SPECIES	23	ENSAMXG00000036422	SERGEF (ENSAMXG00000018058)	tph1a (ENSAMXG00000018104)	saal1 (ENSAMXG00000018126)	ciao2a (ENSAMXG00000041610)	spg11 (ENSAMXG00000000846)	ENSAMXG00000030647	ENSAMXG00000000858	znf609a (ENSAMXG00000036830)	ENSAMXG00000040899	GRAMD2A (ENSAMXG00000035859)	myo9ab (ENSAMXG00000014841)	rsl24d1 (ENSAMXG00000034851) #7	ENSAMXG00000014818 ##15	RFX7 (ENSAMXG00000038850) #18	ENSAMXG00000014804 #22	ENSAMXG00000014800 #24	ENSAMXG00000014794	ENSAMXG00000014790 #29	ENSAMXG00000038598	ENSAMXG00000033014	PNPLA8 (ENSAMXG00000014785)	NRCAM (ENSAMXG00000014777)	ENSAMXG00000041099	CNTN1 (ENSAMXG00000014768)	PDZRN4 (ENSAMXG00000036933)	GXYLT1 (ENSAMXG00000030102)	YAF2 (ENSAMXG00000035723)	ENSAMXG00000014710	prickle1a (ENSAMXG00000014705)	ADAMTS20 (ENSAMXG00000014651)
Electric eel	MODERN SPECIES	47									znf609a (ENSEEEG00000019982)	ENSEEEG00000019980	myo9ab (ENSEEEG00000019978)	ENSEEEG00000019977	rsl24d1 (ENSEEEG00000019976) #7	ENSEEEG00000019974 ##15	RFX7 (ENSEEEG00000019972) #18	ENSEEEG00000019971 #22	ENSEEEG00000019969	ENSEEEG00000019925 #29	ENSEEEG00000019919	ENSEEEG00000019916	ENSEEEG00000019914	NRCAM (ENSEEEG00000019830)	CNTN1 (ENSEEEG00000019822)	PDZRN4 (ENSEEEG00000019821)	GXYLT1 (ENSEEEG00000019820)	YAF2 (ENSEEEG00000019819)	prickle1a (ENSEEEG00000019816)	ENSEEEG00000019815	ADAMTS20 (ENSEEEG00000019807)	irak4 (ENSEEEG00000019799)	twf1a (ENSEEEG00000019788)
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.b	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00940000175785	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.b	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00530000063301.a.b.h	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	585		ENSGT00940000156257.c.a.b	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b.c	ENSGT00940000159754.b.b	ENSGT00390000009453.fb.a.b	ENSGT00390000017625.n.a.b	ENSGT00940000158020.c	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971.bb	ENSGT00940000155347.a.a	ENSGT00950000183105.B.f #7	ENSGT00940000155943.b.d ##15	ENSGT01050000244970.b.j.b.b #18	ENSGT00940000155047.ac.b.a #22	ENSGT00940000154489.A.d.c #24
Salmoninae_a	ANCESTRAL SPECIES	65	ENSGT00940000167680.b	ENSGT00940000156257.c.a.b	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b.c	ENSGT00940000159754.b.b	ENSGT00390000009453.fb.a.b	ENSGT00390000017625.n.a.b	ENSGT00940000158020.c	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971.bb	ENSGT00940000155347.a.a	ENSGT00950000183105.B.f #7	ENSGT00940000155943.b.d ##15	ENSGT01050000244970.b.j.b.b #18	ENSGT00940000155047.ac.b.a #22	ENSGT00940000154489.A.d.c #24	ENSGT00950000183129.a.h	ENSGT00390000018400.d.b	ENSGT01040000240503.A.a.a.d.b.b	ENSGT00390000019406.z	ENSGT00940000160101	ENSGT00950000183187.A	ENSGT00530000063301.a.b.h.b.a.a	ENSGT00530000063301.a.b.h.b.b	ENSGT00950000182870.b.b.j	ENSGT00940000155164.a.a.c.a	ENSGT00940000163963.h.b.a	ENSGT00390000008240.h	ENSGT00940000158943.d.b	ENSGT00940000164516.b.b
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00940000167680.b	ENSGT00940000156257.c.a.b	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b.c	ENSGT00940000159754.b.b	ENSGT00390000009453.fb.a.b	ENSGT00390000017625.n.a.b	ENSGT00940000158020.c	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971.bb	ENSGT00940000155347.a.a	ENSGT00940000154555.e.a.f.b	ENSGT00940000155943.b.d ##15	ENSGT01050000244970.b.j.b.b #18	ENSGT00940000155047.ac.b.a #22	ENSGT00940000154489.A.d.c #24	ENSGT00390000018400.d.b.b	ENSGT00390000018400.d.b.a	ENSGT01040000240503.A.a.a.d.b.b	ENSGT00390000019406.z	ENSGT00940000160101	ENSGT00950000183187.A	ENSGT00530000063301.a.b.h.b.a.a	ENSGT00940000155164.a.a.c.a	ENSGT00940000163963.h.b.b.b	ENSGT00390000008240.h	ENSGT00940000158943.d.b	ENSGT00940000164516.b.b	ENSGT00940000154294	ENSGT00390000017249.f.a
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000167680.b	ENSGT00940000156257.c.a.b	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b.c	ENSGT00940000159754.b.b	ENSGT00390000009453.fb.a.b	ENSGT00390000017625.n.a.b	ENSGT00940000158020.c	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971.bb	ENSGT00940000155347.a.a	ENSGT00940000154555.e.a.f.b	ENSGT00940000155943.b.d ##15	ENSGT01050000244970.b.j.b.b #18	ENSGT00940000155047.ac.b.a #22	ENSGT00940000154489.A.d.c #24	ENSGT00390000018400.d.b.b	ENSGT00390000018400.d.b.a	ENSGT01040000240503.A.a.a.d.b.b	ENSGT00390000019406.z	ENSGT00940000160101	ENSGT00950000183187.A	ENSGT00530000063301.a.b.h.b.a.a	ENSGT00940000155164.a.a.c.a	ENSGT00940000163963.h.b.b.b	ENSGT00390000008240.h	ENSGT00940000158943.d.b	ENSGT00940000164516.b.b	ENSGT00940000154294	ENSGT00390000017249.f.a
Coho salmon	MODERN SPECIES	14	ANO3 (ENSOKIG00005018244)	slc5a12 (ENSOKIG00005018019)	FIBIN (ENSOKIG00005017993)	ENSOKIG00005017988	ENSOKIG00005017984	ENSOKIG00005017965	PRC1 (ENSOKIG00005017864)	CLPX (ENSOKIG00005017746)	ENSOKIG00005017731	GNB5 (ENSOKIG00005017589)	MYO5C (ENSOKIG00005017179)	ENSOKIG00005015289	ENSOKIG00005015124	ENSOKIG00005015035 ##15	RFX7 (ENSOKIG00005015020) #18	ENSOKIG00005015017 #22	ENSOKIG00005015012 #24	ENSOKIG00005015000	ENSOKIG00005014997	ctdspl2a (ENSOKIG00005014919)	sqor (ENSOKIG00005014567)	ENSOKIG00005014541	ATP8B4 (ENSOKIG00005013028)	ENSOKIG00005012936	galk2 (ENSOKIG00005012774)	cops2 (ENSOKIG00005012737)	ENSOKIG00005012725	TJP1 (ENSOKIG00005011691)	ENSOKIG00005010849	ENSOKIG00005010798	ENSOKIG00005010791
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000056384	ENSOMYG00000014179	ENSOMYG00000014167	ENSOMYG00000063352	ENSOMYG00000014138	ENSOMYG00000049235	ENSOMYG00000070548	ENSOMYG00000012968	ENSOMYG00000077644	ENSOMYG00000006007	ENSOMYG00000076995	ENSOMYG00000050595	ENSOMYG00000050167	ENSOMYG00000054066 ##15	ENSOMYG00000002546 #18	ENSOMYG00000002502 #22	ENSOMYG00000002438	ENSOMYG00000065807	ENSOMYG00000070093	ENSOMYG00000072333	ENSOMYG00000004907	ENSOMYG00000002146	ENSOMYG00000072754	ENSOMYG00000001869	cops2 (ENSOMYG00000001774)	galk2 (ENSOMYG00000001728)	ENSOMYG00000001508	sqor (ENSOMYG00000001036)	ctdspl2a (ENSOMYG00000000945)	ENSOMYG00000056481	ENSOMYG00000059545
Salmo	ANCESTRAL SPECIES	90	ENSGT00940000167680.b	ENSGT00940000156257.c.a.b	ENSGT00940000159545	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b.c	ENSGT00940000162754	ENSGT00390000009453.fb.a.b	ENSGT00390000017625.n.a.b	ENSGT00940000158020.c	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971.bb	ENSGT00940000155347.a.a	ENSGT00950000183105.B.f #7	ENSGT00940000155943.b.d ##15	ENSGT01050000244970.b.j.b.b #18	ENSGT00940000155047.ac.b.a #22	ENSGT00940000154489.A.d.c #24	ENSGT01040000240503.A.a.a.d.b.b	ENSGT00390000019406.z	ENSGT00940000160101	ENSGT00950000183187.A.f	ENSGT00530000063301.a.b.h.b.b	ENSGT00950000182870.b.b.j	ENSGT00940000155164.a.a.c.a	ENSGT00940000163963.h.b.a	ENSGT00390000008240.h	ENSGT00940000158943.d.b	ENSGT00940000164516.b.b	ENSGT00940000164919.a.c
River trout	MODERN SPECIES	37	svip (ENSSTUG00000049992)	ANO3 (ENSSTUG00000001146)	slc5a12 (ENSSTUG00000001694)	FIBIN (ENSSTUG00000001824)	ENSSTUG00000001826	spi1a (ENSSTUG00000001831)	prc1a (ENSSTUG00000001881)	CLPX (ENSSTUG00000001968)	ENSSTUG00000002051	gnb5a (ENSSTUG00000002094)	MYO5C (ENSSTUG00000002175)	ENSSTUG00000002340	ENSSTUG00000004583 ##15	RFX7 (ENSSTUG00000004761) #18	ENSSTUG00000004771	ENSSTUG00000004773 #22	ENSSTUG00000004796 #24	ENSSTUG00000004809	ENSSTUG00000004816	GAS2 (ENSSTUG00000004823)	ENSSTUG00000004855	ENSSTUG00000004873	ANO5 (ENSSTUG00000004902)	sigirr (ENSSTUG00000005790)	PKP3 (ENSSTUG00000005823)	cd81b (ENSSTUG00000005884)	KCNC1 (ENSSTUG00000005912)	ENSSTUG00000005930	ENSSTUG00000005951	ENSSTUG00000006261	ENSSTUG00000006279
Atlantic salmon	MODERN SPECIES	1	svip (ENSSSAG00000042784)	ANO3 (ENSSSAG00000109476)	slc5a12 (ENSSSAG00000072613)	FIBIN (ENSSSAG00000087093)	ENSSSAG00000121936	spi1a (ENSSSAG00000086021)	ENSSSAG00000041644	ENSSSAG00000039688	ENSSSAG00000039565	ENSSSAG00000094600	ENSSSAG00000083484	ENSSSAG00000072800	rsl24d1 (ENSSSAG00000083208) #7	ENSSSAG00000072517 ##15	ENSSSAG00000072500 #18	ENSSSAG00000056488 #22	ENSSSAG00000089660 #24	ENSSSAG00000083033	ctdspl2a (ENSSSAG00000056544)	sqor (ENSSSAG00000044360)	ENSSSAG00000110568	ENSSSAG00000057699	galk2 (ENSSSAG00000057840)	cops2 (ENSSSAG00000111618)	ENSSSAG00000058295	ENSSSAG00000112264	ENSSSAG00000117593	ENSSSAG00000058963	ENSSSAG00000117608	ENSSSAG00000070596	ENSSSAG00000072478
Huchen	MODERN SPECIES	5161																ENSHHUG00000019705 #22	ENSHHUG00000019839 #24
Salmoninae	ANCESTRAL SPECIES	141														ENSGT00940000155943.b.c ##15	ENSGT01050000244970.b.j.b.a #18	ENSGT00940000155047.ac.b.b #22	ENSGT00940000154489.A.d.d #24	ENSGT00940000164919.a.d	ENSGT00940000164516.b.a	ENSGT00390000018637	ENSGT00940000158943.d.a	ENSGT00390000008240.g	ENSGT00940000163963.h.a	ENSGT00940000155164.a.a.c.b	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00530000063301.a.b.h.a	ENSGT00940000175785	ENSGT00390000019406.y	ENSGT01040000240503.A.a.a.d.b.a	ENSGT00390000018400.d.a
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000167680.a	ENSGT00940000156257.c.a.a	ENSGT00390000015299.a.a.b.d	ENSGT00940000159754.b.a	ENSGT00390000009453.fb.a.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625.n.a.a	ENSGT00840000129915.a	ENSGT00950000182990.a.a.a.b.c.a.b	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.b	ENSGT00940000157971.cb.b	ENSGT00940000154555.e.a.f.a	ENSGT00940000155943.b.c ##15	ENSGT01050000244970.b.j.b.a #18	ENSGT00940000155047.ac.b.b #22	ENSGT00940000154489.A.d.d #24	ENSGT00940000164919.a.d	ENSGT00940000164516.b.a	ENSGT00390000018637	ENSGT00940000158943.d.a	ENSGT00390000008240.g	ENSGT00940000163963.h.a	ENSGT00940000155164.a.a.c.b	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.i	ENSGT00530000063301.a.b.h.a	ENSGT00390000019406.y	ENSGT01040000240503.A.a.a.d.b.a	ENSGT00390000018400.d.a	ENSGT00660000097073
Salmo	ANCESTRAL SPECIES	50	ENSGT00940000167680.a	ENSGT00940000156257.c.a.a	ENSGT00390000015299.a.a.b.d	ENSGT00940000159754.b.a	ENSGT00390000009453.fb.a.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625.n.a.a	ENSGT00840000129915.a	ENSGT00950000182990.a.a.a.b.c.a.b	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.b	ENSGT00940000157971.cb.b	ENSGT00940000154555.e.a.f.a	ENSGT00940000155943.b.c ##15	ENSGT01050000244970.b.j.b.a #18	ENSGT00940000155047.ac.b.b #22	ENSGT00940000154489.A.d.d #24	ENSGT00940000164919.a.d	ENSGT00940000164516.b.a	ENSGT00390000018637	ENSGT00940000158943.d.a	ENSGT00390000008240.g	ENSGT00940000163963.h.a	ENSGT00940000155164.a.a.c.b	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.i	ENSGT00530000063301.a.b.h.a	ENSGT00390000019406.y	ENSGT01040000240503.A.a.a.d.b.a	ENSGT00390000018400.d.a	ENSGT00660000097073
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000067388	ENSSSAG00000067382	ENSSSAG00000084584	ENSSSAG00000067328	ENSSSAG00000099327	ENSSSAG00000067221	ENSSSAG00000063676	ENSSSAG00000089356	fadsd6 (ENSSSAG00000062830)	ap4e1 (ENSSSAG00000061342)	GNB5 (ENSSSAG00000038705)	ENSSSAG00000009450	ARPP19 (ENSSSAG00000088654)	ENSSSAG00000071342 ##15	ENSSSAG00000071333 #18	ENSSSAG00000071323 #22	ENSSSAG00000071316 #24	ENSSSAG00000090665	ENSSSAG00000073914	fan1 (ENSSSAG00000070627)	ENSSSAG00000121630	ENSSSAG00000094042	ENSSSAG00000120998	ENSSSAG00000097078	ENSSSAG00000046628	ENSSSAG00000108598	ENSSSAG00000044731	ENSSSAG00000044558	cops2 (ENSSSAG00000084452)	ENSSSAG00000088012	ENSSSAG00000057578
River trout	MODERN SPECIES	33	svip (ENSSTUG00000029713)	ENSSTUG00000029705	ANO3 (ENSSTUG00000029008)	ENSSTUG00000028980	ENSSTUG00000028966	PRC1 (ENSSTUG00000028895)	CLPX (ENSSTUG00000027954)	CYP19A1 (ENSSTUG00000026712)	fads2 (ENSSTUG00000022588)	ENSSTUG00000022146	gnb5a (ENSSTUG00000022018)	MYO5C (ENSSTUG00000021950)	ARPP19 (ENSSTUG00000021937)	ENSSTUG00000021900 ##15	RFX7 (ENSSTUG00000021886) #18	ENSSTUG00000021815 #22	ENSSTUG00000021795 #24	ENSSTUG00000021755	ENSSTUG00000018973	fan1 (ENSSTUG00000018478)	ENSSTUG00000018450	ENSSTUG00000018445	ENSSTUG00000016891	ENSSTUG00000016244	ENSSTUG00000015782	ENSSTUG00000015685	cops2 (ENSSTUG00000015624)	sqor (ENSSTUG00000015530)	ctdspl2a (ENSSTUG00000014933)	EIF3J (ENSSTUG00000014893)	parp16 (ENSSTUG00000014889)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000155755.a.a.c.b	ENSGT00940000167680.a	ENSGT00940000156257.c.a.a	ENSGT00390000015299.a.a.b.d	ENSGT00390000009453.fb.a.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625.n.a.a	ENSGT00840000129915.a	ENSGT00950000182990.a.a.a.b.c.a.b	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.b	ENSGT00940000157971.cb.a.a	ENSGT00940000154555.e.a.f.a	ENSGT00940000155943.b.c ##15	ENSGT01050000244970.b.j.b.a #18	ENSGT00940000155047.ac.b.b #22	ENSGT00940000154489.A.d.d #24	ENSGT00940000164919.a.d	ENSGT00940000164516.b.a	ENSGT00390000018637	ENSGT00940000158943.d.a	ENSGT00390000008240.g	ENSGT00940000163963.h.a	ENSGT00940000155164.a.a.c.b	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.i	ENSGT00530000063301.a.b.h.a	ENSGT00390000019406.y	ENSGT01040000240503.A.a.a.d.b.a	ENSGT00390000018400.d.a	ENSGT00950000183129.a.g
Rainbow trout	MODERN SPECIES	22	ANO3 (ENSOMYG00000001861)	ENSOMYG00000077292	ENSOMYG00000001895	ENSOMYG00000001986	ENSOMYG00000002001	ENSOMYG00000002045	ENSOMYG00000052172	ENSOMYG00000002674	ENSOMYG00000004028	fd6d (ENSOMYG00000018124)	gnb5a (ENSOMYG00000004183)	ENSOMYG00000064180	ARPP19 (ENSOMYG00000004206)	ENSOMYG00000063193 ##15	ENSOMYG00000068158 #18	ENSOMYG00000077679 #22	ENSOMYG00000073672 #24	ENSOMYG00000052100	ENSOMYG00000004538	ENSOMYG00000004629	ENSOMYG00000069732	ENSOMYG00000002290	ENSOMYG00000005743	ENSOMYG00000049355	ENSOMYG00000049743	ENSOMYG00000006623	ENSOMYG00000006768	cops2 (ENSOMYG00000026742)	ENSOMYG00000071828	ENSOMYG00000026888	ENSOMYG00000026948
Huchen	MODERN SPECIES	3535																ENSHHUG00000036007 #22	ENSHHUG00000036024 #24	ENSHHUG00000036038 #24
Northern pike	MODERN SPECIES	18	ENSELUG00000025015	slc1a2b (ENSELUG00000004468)	PAMR1 (ENSELUG00000004507)	trim44 (ENSELUG00000004539)	LDLRAD3 (ENSELUG00000004564)	ascl1b (ENSELUG00000004573)	irf7 (ENSELUG00000004592)	ENSELUG00000004640	RASSF7 (ENSELUG00000004684)	LRRC56 (ENSELUG00000004702)	HRAS (ENSELUG00000004712)	ENSELUG00000004749	rsl24d1 (ENSELUG00000004796) #7	ENSELUG00000004818 ##15	RFX7 (ENSELUG00000004839) #18	ENSELUG00000004863 #22	ENSELUG00000004903 #24	ENSELUG00000004933	ENSELUG00000004996	fan1 (ENSELUG00000005035)	ENSELUG00000005060	DUOXA2 (ENSELUG00000005093)	ENSELUG00000005148	ENSELUG00000005181	TJP1 (ENSELUG00000005214)	ENSELUG00000005245	ENSELUG00000005270	CEP152 (ENSELUG00000005310)	cops2 (ENSELUG00000005355)	galk2 (ENSELUG00000005380)	ATP8B4 (ENSELUG00000005425)
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Tiger tail seahorse	MODERN SPECIES	489	CYP19A1 (ENSHCOG00000019110)	ENSHCOG00000019071	gnb5a (ENSHCOG00000019046)	ENSHCOG00000018995	ENSHCOG00000018955	ENSHCOG00000018932	ENSHCOG00000018869	ARPP19 (ENSHCOG00000018834)	rsl24d1 (ENSHCOG00000018822) #7	ENSHCOG00000018802 ##15	ighmbp2 (ENSHCOG00000018786)	rapsn (ENSHCOG00000018743)	kbtbd4 (ENSHCOG00000018709)	ENSHCOG00000018693	RFX7 (ENSHCOG00000018672) #18	ENSHCOG00000018660 #22	ENSHCOG00000018454	ENSHCOG00000018309	fan1 (ENSHCOG00000018261)	ENSHCOG00000018226	ENSHCOG00000018220	DUOXA1 (ENSHCOG00000018212)	ENSHCOG00000018146	ENSHCOG00000018117	TJP1 (ENSHCOG00000018094)	ENSHCOG00000018026	slc27a2b (ENSHCOG00000017919)	ENSHCOG00000017372	galk2 (ENSHCOG00000017353)	nop10 (ENSHCOG00000000606)	sqor (ENSHCOG00000017298)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00950000183129.a
Mangrove rivulus	MODERN SPECIES	6	ENSKMAG00000021542	SPI1 (ENSKMAG00000021548)	prc1a (ENSKMAG00000021554)	ENSKMAG00000021562	CLPX (ENSKMAG00000021574)	ENSKMAG00000021592	CYP19A1 (ENSKMAG00000021603)	ENSKMAG00000021651	gnb5a (ENSKMAG00000021657)	MYO5C (ENSKMAG00000021667)	ENSKMAG00000021694	ARPP19 (ENSKMAG00000021772)	rsl24d1 (ENSKMAG00000021777) #7	ENSKMAG00000021781 ##15	RFX7 (ENSKMAG00000021789) #18	ENSKMAG00000021797 #22	ENSKMAG00000021803 #24	ENSKMAG00000021809	ENSKMAG00000021816	fan1 (ENSKMAG00000021829)	ENSKMAG00000021840	DUOXA2 (ENSKMAG00000021848)	ENSKMAG00000021882	TJP1 (ENSKMAG00000000175)	ENSKMAG00000000298	ENSKMAG00000000311	galk2 (ENSKMAG00000000321)	ENSKMAG00000000384	sqor (ENSKMAG00000000610)	ctdspl2a (ENSKMAG00000000672)	ENSKMAG00000000726
Turquoise killifish	MODERN SPECIES	1622	ENSNFUG00015024036	ANO3 (ENSNFUG00015023975)	FP102071.1 (ENSNFUG00015023957)	SPI1 (ENSNFUG00015023954)	ENSNFUG00015023947	PRC1 (ENSNFUG00015023910)	CLPX (ENSNFUG00015023876)	ENSNFUG00015023863	CYP19A1B (ENSNFUG00015023830)	ENSNFUG00015023814	gnb5a (ENSNFUG00015023793)	MYO5C (ENSNFUG00015023424)	RSL24D1 (ENSNFUG00015023247) #7	ENSNFUG00015023194 ##15	RFX7 (ENSNFUG00015023185) #18	ENSNFUG00015023180 #22	ENSNFUG00015023177 #24	ENSNFUG00015023172	ADAM10B (ENSNFUG00015022375)	fan1 (ENSNFUG00015022294)	CU694372.1 (ENSNFUG00015022251)	DUOXA2 (ENSNFUG00015022241)	ENSNFUG00015021606	TJP1 (ENSNFUG00015020446)	ENSNFUG00015019888	ENSNFUG00015019864	nptna (ENSNFUG00015019790)	HCN4 (ENSNFUG00015019726)	pkmb (ENSNFUG00015018700)	RPP25 (ENSNFUG00015018625)	alx4b (ENSNFUG00015018624)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.g	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Poecilia	ANCESTRAL SPECIES	5	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.g	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
NAME_6	ANCESTRAL SPECIES	138	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT01000000214413.a.w.c.a	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b.h
Amazon molly	MODERN SPECIES	692											MYO5C (ENSPFOG00000022053)	ENSPFOG00000002550	rsl24d1 (ENSPFOG00000003472) #7	ENSPFOG00000003491 ##15	RFX7 (ENSPFOG00000003977) #18	ENSPFOG00000004140 #22	ENSPFOG00000004184 #24	ENSPFOG00000004271	ENSPFOG00000004357	fan1 (ENSPFOG00000004750)	ENSPFOG00000004900	DUOXA2 (ENSPFOG00000004971)	ENSPFOG00000005147	TJP1 (ENSPFOG00000005565)	ENSPFOG00000005710	ENSPFOG00000023787
Sailfin molly	MODERN SPECIES	954																ENSPLAG00000012811 #22	ENSPLAG00000012784	ENSPLAG00000012569	fan1 (ENSPLAG00000000636)	ENSPLAG00000012491	DUOXA2 (ENSPLAG00000012401)	ENSPLAG00000012310
Guppy	MODERN SPECIES	458	ENSPREG00000014309	SPI1 (ENSPREG00000014317)	prc1a (ENSPREG00000014326)	ENSPREG00000014341	CLPX (ENSPREG00000014381)	CYP19A1 (ENSPREG00000014438)	ENSPREG00000014455	ENSPREG00000014470	gnb5a (ENSPREG00000014507)	ENSPREG00000014722	ENSPREG00000014737	ARPP19 (ENSPREG00000014775)	rsl24d1 (ENSPREG00000014786) #7	ENSPREG00000014810 ##15	RFX7 (ENSPREG00000014867) #18	ENSPREG00000014878 #22	ENSPREG00000014894 #24	ENSPREG00000014919	ENSPREG00000014942	fan1 (ENSPREG00000014988)	ENSPREG00000015001	DUOXA2 (ENSPREG00000015034)	ENSPREG00000015104	TJP1 (ENSPREG00000015391)	ENSPREG00000015498	ENSPREG00000015513	ENSPREG00000015526	ENSPREG00000015537	galk2 (ENSPREG00000015584)	ENSPREG00000015613	sqor (ENSPREG00000015700)
Platyfish	MODERN SPECIES	11	prc1a (ENSXMAG00000006869)	ENSXMAG00000025145	CLPX (ENSXMAG00000006841)	CYP19A1 (ENSXMAG00000006782)	ENSXMAG00000006759	ENSXMAG00000021210	ENSXMAG00000025435	gnb5a (ENSXMAG00000006756)	MYO5C (ENSXMAG00000006735)	ENSXMAG00000028436	ENSXMAG00000006730	ARPP19 (ENSXMAG00000006725)	rsl24d1 (ENSXMAG00000026225) #7	ENSXMAG00000006679 ##15	RFX7 (ENSXMAG00000006676) #18	ENSXMAG00000006665 #22	ENSXMAG00000006637 #24	ENSXMAG00000029098	ENSXMAG00000006595	fan1 (ENSXMAG00000006579)	ENSXMAG00000006574	DUOXA2 (ENSXMAG00000006545)	ENSXMAG00000006491	TJP1 (ENSXMAG00000007496)	ENSXMAG00000020895	ENSXMAG00000011116	galk2 (ENSXMAG00000022267)	ENSXMAG00000011137	sqor (ENSXMAG00000007483)	ctdspl2a (ENSXMAG00000007467)	ENSXMAG00000007465
NAME_4	ANCESTRAL SPECIES	26	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00940000175785	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Mummichog	MODERN SPECIES	2447	ENSFHEG00000011588	SPI1 (ENSFHEG00000011565)	PRC1 (ENSFHEG00000011556)	ENSFHEG00000011537	CLPX (ENSFHEG00000011524)	ENSFHEG00000011398	CYP19A1 (ENSFHEG00000000261)	AP4E1 (ENSFHEG00000011323)	gnb5a (ENSFHEG00000011304)	MYO5C (ENSFHEG00000011289)	ENSFHEG00000011180	ARPP19 (ENSFHEG00000011115)	rsl24d1 (ENSFHEG00000011107) #7	ENSFHEG00000011083 ##15	RFX7 (ENSFHEG00000010971) #18	ENSFHEG00000000682 #22	ENSFHEG00000010850 #24	ENSFHEG00000010831	ENSFHEG00000010798	fan1 (ENSFHEG00000010750)	ENSFHEG00000010739	DUOXA2 (ENSFHEG00000010711)	ENSFHEG00000010655	TJP1 (ENSFHEG00000010076)	ENSFHEG00000009940	ENSFHEG00000009889	ENSFHEG00000009861	galk2 (ENSFHEG00000009845)	ENSFHEG00000009817	sqor (ENSFHEG00000009752)	ctdspl2a (ENSFHEG00000009725)
Oryzias	ANCESTRAL SPECIES	16	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.c.a	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00950000183129.a
Javanese ricefish	MODERN SPECIES	20	svip (ENSOJAG00000000765)	ANO3 (ENSOJAG00000000620)	FIBIN (ENSOJAG00000000593)	ENSOJAG00000000589	ENSOJAG00000000577	prc1a (ENSOJAG00000000473)	ENSOJAG00000000418	CLPX (ENSOJAG00000000394)	ENSOJAG00000000336	AP4E1 (ENSOJAG00000000272)	gnb5a (ENSOJAG00000000194)	MYO5C (ENSOJAG00000017460)	rsl24d1 (ENSOJAG00000016227) #7	ENSOJAG00000016107 ##15	RFX7 (ENSOJAG00000016083) #18	ENSOJAG00000016074 #22	ENSOJAG00000016067 #24	ENSOJAG00000016031	ENSOJAG00000014641	fan1 (ENSOJAG00000014367)	ENSOJAG00000014349	DUOXA2 (ENSOJAG00000014344)	ENSOJAG00000013744	TJP1 (ENSOJAG00000013439)	ENSOJAG00000013257	galk2 (ENSOJAG00000013214)	ATP8B4 (ENSOJAG00000011661)	sqor (ENSOJAG00000011575)	ctdspl2a (ENSOJAG00000011513)	parp16 (ENSOJAG00000011503)	scamp5a (ENSOJAG00000011489)
Indian medaka	MODERN SPECIES	15	ENSOMEG00000000411	CLPX (ENSOMEG00000016400)	ENSOMEG00000016301	CYP19A1 (ENSOMEG00000016270)	ENSOMEG00000016241	ENSOMEG00000016217	gnb5a (ENSOMEG00000016197)	MYO5C (ENSOMEG00000016178)	ENSOMEG00000016145	ENSOMEG00000016128	ENSOMEG00000016067	ARPP19 (ENSOMEG00000016045)	rsl24d1 (ENSOMEG00000016034) #7	ENSOMEG00000016015 ##15	RFX7 (ENSOMEG00000015971) #18	ENSOMEG00000015945 #22	ENSOMEG00000015905 #24	ENSOMEG00000015858	fan1 (ENSOMEG00000015803)	ENSOMEG00000015731	DUOXA2 (ENSOMEG00000015710)	ENSOMEG00000015680	TJP1 (ENSOMEG00000015499)	ENSOMEG00000015222	ENSOMEG00000015175	galk2 (ENSOMEG00000015062)	ENSOMEG00000014947	sqor (ENSOMEG00000014671)	ctdspl2a (ENSOMEG00000014597)	ENSOMEG00000014544	parp16 (ENSOMEG00000014528)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT00940000180728	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000005668	prc1a (ENSORLG00000005653)	ENSORLG00000023984	CLPX (ENSORLG00000005632)	ENSORLG00000026224	cyp19b (ENSORLG00000005548)	AP4E1 (ENSORLG00000005570)	ENSORLG00000023076	gnb5a (ENSORLG00000005515)	MYO5C (ENSORLG00000005475)	ENSORLG00000005448	ARPP19 (ENSORLG00000026862)	rsl24d1 (ENSORLG00000005376) #7	ENSORLG00000005369 ##15	RFX7 (ENSORLG00000028723) #18	ENSORLG00000005330 #22	ENSORLG00000005318 #24	ENSORLG00000025866	ENSORLG00000005304	fan1 (ENSORLG00000029036)	ENSORLG00000022027	DUOXA2 (ENSORLG00000005284)	ENSORLG00000005268	TJP1 (ENSORLG00000005217)	ENSORLG00000005181	ENSORLG00000005155	galk2 (ENSORLG00000005145)	ATP8B4 (ENSORLG00000005106)	sqor (ENSORLG00000005056)	ctdspl2a (ENSORLG00000005035)	ENSORLG00000024288
Chinese medaka	MODERN SPECIES	766	FIBIN (ENSOSIG00000014460)	ENSOSIG00000014461	ENSOSIG00000014463	prc1a (ENSOSIG00000014465)	ENSOSIG00000014652	CLPX (ENSOSIG00000014658)	ENSOSIG00000014670	ENSOSIG00000014674	AP4E1 (ENSOSIG00000014698)	gnb5a (ENSOSIG00000014705)	ENSOSIG00000015211	ENSOSIG00000015378	rsl24d1 (ENSOSIG00000016675) #7	ENSOSIG00000016684 ##15	RFX7 (ENSOSIG00000016698) #18	ENSOSIG00000016699 #22	ENSOSIG00000016704 #24	ENSOSIG00000016707	ENSOSIG00000016764	fan1 (ENSOSIG00000018175)	ENSOSIG00000018185	ENSOSIG00000018190	DUOXA2 (ENSOSIG00000018193)	ENSOSIG00000018285	TJP1 (ENSOSIG00000019656)	ENSOSIG00000019667	ENSOSIG00000019678	galk2 (ENSOSIG00000019695)	ATP8B4 (ENSOSIG00000019745)	sqor (ENSOSIG00000019787)	ctdspl2a (ENSOSIG00000019928)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Nile tilapia	MODERN SPECIES	19	ANO3 (ENSONIG00000008292)	FIBIN (ENSONIG00000021086)	ENSONIG00000008301	ENSONIG00000008302	prc1a (ENSONIG00000008303)	ENSONIG00000032895	CLPX (ENSONIG00000008305)	ENSONIG00000032749	CYP19A1 (ENSONIG00000008307)	AP4E1 (ENSONIG00000008312)	MYO5C (ENSONIG00000008313)	ENSONIG00000008315	rsl24d1 (ENSONIG00000039806) #7	ENSONIG00000008326 ##15	RFX7 (ENSONIG00000008334) #18	ENSONIG00000008337 #22	ENSONIG00000008342 #24	ENSONIG00000008346	ENSONIG00000034321	fan1 (ENSONIG00000008348)	ENSONIG00000008356	DUOXA2 (ENSONIG00000037948)	ENSONIG00000008359	TJP1 (ENSONIG00000008370)	ENSONIG00000008374	ENSONIG00000008380	ENSONIG00000008382	galk2 (ENSONIG00000008385)	ATP8B4 (ENSONIG00000008387)	sqor (ENSONIG00000008398)	ctdspl2a (ENSONIG00000008400)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Lyretail cichlid	MODERN SPECIES	305	ENSNBRG00000013025	ENSNBRG00000012977	prc1a (ENSNBRG00000012836)	CLPX (ENSNBRG00000012799)	ENSNBRG00000012785	CYP19A1 (ENSNBRG00000012763)	ENSNBRG00000012751	ENSNBRG00000012706	gnb5a (ENSNBRG00000012525)	MYO5C (ENSNBRG00000012436)	ENSNBRG00000012333	ARPP19 (ENSNBRG00000012322)	rsl24d1 (ENSNBRG00000012304) #7	ENSNBRG00000012265 ##15	RFX7 (ENSNBRG00000012232) #18	ENSNBRG00000012030 #22	ENSNBRG00000011851	ENSNBRG00000011782	fan1 (ENSNBRG00000011690)	ENSNBRG00000011623	DUOXA2 (ENSNBRG00000011588)
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00940000158020.c.e.b	ENSGT00840000129915.a.e	ENSGT00940000175727	ENSGT00840000129915.a.f	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b.d	ENSGT00940000164068.a.b.a.a.b.c	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406.w.a
Burton s mouthbrooder	MODERN SPECIES	728	ENSHBUG00000011077	ENSHBUG00000011088	prc1a (ENSHBUG00000000291)	CLPX (ENSHBUG00000011168)	ENSHBUG00000011200	ENSHBUG00000011221	CYP19A1 (ENSHBUG00000011259)	AP4E1 (ENSHBUG00000011280)	gnb5a (ENSHBUG00000000303)	MYO5C (ENSHBUG00000011379)	ENSHBUG00000011499	ARPP19 (ENSHBUG00000011510)	rsl24d1 (ENSHBUG00000011516) #7	ENSHBUG00000011569 ##15	RFX7 (ENSHBUG00000011574) #18	ENSHBUG00000011580 #22
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c.e.a	ENSGT00840000129915.a.e	ENSGT00940000175727	ENSGT00840000129915.a.f	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b.d	ENSGT00940000164068.a.b.a.a.b.c	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406.w.a
Haplochromini_B	ANCESTRAL SPECIES	89							ENSGT00840000129915.a.e.b	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.d	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b.d	ENSGT00940000164068.a.b.a.a.b.c	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406.w.a
Eastern happy	MODERN SPECIES	19	caprin1b (ENSACLG00000007463)	lmo2 (ENSACLG00000007475)	alx4b (ENSACLG00000007477)	tspan18b (ENSACLG00000007484)	cd82b (ENSACLG00000008085)	tp53i11b (ENSACLG00000008088)	CYP19A1 (ENSACLG00000008094)	ENSACLG00000008125	gnb5a (ENSACLG00000008156)	MYO5C (ENSACLG00000008174)	ENSACLG00000008215	ARPP19 (ENSACLG00000008255)	rsl24d1 (ENSACLG00000008265) #7	ENSACLG00000008277 ##15	RFX7 (ENSACLG00000008336) #18	ENSACLG00000008348 #22	ENSACLG00000009100 #24	ENSACLG00000009136	ENSACLG00000009152	fan1 (ENSACLG00000009219)	ENSACLG00000009239	DUOXA2 (ENSACLG00000009263)	ENSACLG00000009298	TJP1 (ENSACLG00000009394)	ENSACLG00000009529	ENSACLG00000009579	ENSACLG00000009671	galk2 (ENSACLG00000009703)	ENSACLG00000009728	CYP19A1 (ENSACLG00000009748)	ENSACLG00000010448
Zebra mbuna	MODERN SPECIES	111						ENSMZEG00005027663	CYP19A1 (ENSMZEG00005027661)	ENSMZEG00005027658	gnb5a (ENSMZEG00005027656)	MYO5C (ENSMZEG00005027655)	ENSMZEG00005027649	ARPP19 (ENSMZEG00005027646)	rsl24d1 (ENSMZEG00005027645) #7	ENSMZEG00005027644 ##15	RFX7 (ENSMZEG00005027642) #18	ENSMZEG00005027641 #22	ENSMZEG00005027639 #24	ENSMZEG00005027637	ENSMZEG00005027635	fan1 (ENSMZEG00005027633)	ENSMZEG00005027632	DUOXA2 (ENSMZEG00005027631)	ENSMZEG00005027617	TJP1 (ENSMZEG00005027613)	ENSMZEG00005027611	ENSMZEG00005027572	ENSMZEG00005027560
P. nyererei	MODERN SPECIES	322	ENSPNYG00000019856	prc1a (ENSPNYG00000019874)	CLPX (ENSPNYG00000019938)	ENSPNYG00000019998	CYP19A1 (ENSPNYG00000020037)	ENSPNYG00000020066	ENSPNYG00000020083	gnb5a (ENSPNYG00000020128)	ENSPNYG00000020158	ENSPNYG00000020205	ENSPNYG00000020231	ARPP19 (ENSPNYG00000020322)	rsl24d1 (ENSPNYG00000020325) #7	ENSPNYG00000020339 ##15	RFX7 (ENSPNYG00000020411) #18	ENSPNYG00000020447 #22	ENSPNYG00000020533 #24	ENSPNYG00000020578	ENSPNYG00000020725	fan1 (ENSPNYG00000020771)	ENSPNYG00000020804	DUOXA2 (ENSPNYG00000020837)	ENSPNYG00000020894	TJP1 (ENSPNYG00000021029)	ENSPNYG00000021162	ENSPNYG00000021261	ENSPNYG00000021351	ENSPNYG00000021408	galk2 (ENSPNYG00000021468)	ENSPNYG00000021495	sqor (ENSPNYG00000021525)
Midas cichlid	MODERN SPECIES	470	prc1a (ENSACIG00000012143)	ENSACIG00000012223	CLPX (ENSACIG00000012237)	ENSACIG00000012262	CYP19A1 (ENSACIG00000012465)	ENSACIG00000014700	AP4E1 (ENSACIG00000014727)	gnb5a (ENSACIG00000014775)	ENSACIG00000014809	ENSACIG00000014832	ENSACIG00000014852	ARPP19 (ENSACIG00000014932)	rsl24d1 (ENSACIG00000014960) #7	ENSACIG00000014986 ##15	RFX7 (ENSACIG00000015084) #18	ENSACIG00000015112 #22	ENSACIG00000015221	ENSACIG00000015325
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.f	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.f	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c.f	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b.c.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406.s	ENSGT00390000019406.t
Clown anemonefish	MODERN SPECIES	1633		pgghg (ENSAOCG00000003442)	ENSAOCG00000003434	PNPLA2 (ENSAOCG00000003415)	ENSAOCG00000003389	CYP19A1 (ENSAOCG00000003386)	AP4E1 (ENSAOCG00000003379)	gnb5a (ENSAOCG00000003371)	MYO5C (ENSAOCG00000003351)	ENSAOCG00000003335	ENSAOCG00000003321	ARPP19 (ENSAOCG00000003315)	rsl24d1 (ENSAOCG00000003309) #7	ENSAOCG00000000083 ##15	RFX7 (ENSAOCG00000003279) #18	ENSAOCG00000003271 #22	ENSAOCG00000003265 #24	ENSAOCG00000003258	ufd1l (ENSAOCG00000003231)	si:ch211-51h9.6 (ENSAOCG00000003219)	mrpl40 (ENSAOCG00000003216)	acaa2 (ENSAOCG00000003214)	rpl6 (ENSAOCG00000003204)	dynll1 (ENSAOCG00000003208)	polb (ENSAOCG00000003197)	enkd1 (ENSAOCG00000003184)	vdac3 (ENSAOCG00000003177)	ikbkb (ENSAOCG00000003169)	PLAT (ENSAOCG00000003161)	CLTCL1 (ENSAOCG00000003149)	SLC25A1 (ENSAOCG00000003112)
Orange clownfish	MODERN SPECIES	18	ENSAPEG00000023451	ENSAPEG00000023458	prc1a (ENSAPEG00000023470)	ENSAPEG00000023486	CLPX (ENSAPEG00000023505)	ENSAPEG00000023535	CYP19A1 (ENSAPEG00000023568)	AP4E1 (ENSAPEG00000023592)	gnb5a (ENSAPEG00000023604)	MYO5C (ENSAPEG00000023626)	ENSAPEG00000023689	ARPP19 (ENSAPEG00000023756)	rsl24d1 (ENSAPEG00000023760) #7	ENSAPEG00000023835 ##15	RFX7 (ENSAPEG00000023855) #18	ENSAPEG00000023868 #22	ENSAPEG00000023881 #24	ENSAPEG00000023904	ENSAPEG00000023916	fan1 (ENSAPEG00000023952)	ENSAPEG00000023972	DUOXA2 (ENSAPEG00000024006)	ENSAPEG00000024019	TJP1 (ENSAPEG00000024063)	ENSAPEG00000024133	ENSAPEG00000024151	ENSAPEG00000024168	galk2 (ENSAPEG00000024209)	ATP8B4 (ENSAPEG00000024239)	sqor (ENSAPEG00000024299)	sqor (ENSAPEG00000024315)
Spiny chromis	MODERN SPECIES	144	ENSAPOG00000013284	ENSAPOG00000013248	prc1a (ENSAPOG00000013242)	ENSAPOG00000013221	CLPX (ENSAPOG00000000825)	ENSAPOG00000013109	CYP19A1 (ENSAPOG00000013099)	AP4E1 (ENSAPOG00000013069)	gnb5a (ENSAPOG00000013046)	MYO5C (ENSAPOG00000013033)	ENSAPOG00000012850	ARPP19 (ENSAPOG00000012683)	rsl24d1 (ENSAPOG00000012671) #7	ENSAPOG00000012624 ##15	RFX7 (ENSAPOG00000012430) #18	ENSAPOG00000012418 #22	ENSAPOG00000012400 #24	ENSAPOG00000012370	ENSAPOG00000012225	fan1 (ENSAPOG00000012139)	ENSAPOG00000012125	DUOXA2 (ENSAPOG00000012083)	ENSAPOG00000011992	TJP1 (ENSAPOG00000011958)	ENSAPOG00000011800	ENSAPOG00000011749	ENSAPOG00000011720	galk2 (ENSAPOG00000011537)	ATP8B4 (ENSAPOG00000011477)	sqor (ENSAPOG00000011364)	ctdspl2a (ENSAPOG00000011303)
Bicolor damselfish	MODERN SPECIES	928																TCF12 (ENSSPAG00000003267) #22	ENSSPAG00000003225 #24	ENSSPAG00000003051	ENSSPAG00000002949	fan1 (ENSSPAG00000002829)	ENSSPAG00000002792	DUOXA2 (ENSSPAG00000002726)	ENSSPAG00000002394	TJP1 (ENSSPAG00000002248)	ENSSPAG00000002225	ENSSPAG00000001770	ENSSPAG00000001623	galk2 (ENSSPAG00000001579)	ATP8B4 (ENSSPAG00000001506)	sqor (ENSSPAG00000001467)	sqor (ENSSPAG00000001436)
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00660000097073
Turbot	MODERN SPECIES	1	ANO3 (ENSSMAG00000012377)	ENSSMAG00000012366	ENSSMAG00000035655	ENSSMAG00000012342	ENSSMAG00000012325	ENSSMAG00000012294	ENSSMAG00000032465	CYP19A1 (ENSSMAG00000012274)	AP4E1 (ENSSMAG00000012246)	ENSSMAG00000012114	ENSSMAG00000012063	ENSSMAG00000011986	rsl24d1 (ENSSMAG00000033405) #7	ENSSMAG00000011869 ##15	ENSSMAG00000011855 #18	ENSSMAG00000011836 #22	ENSSMAG00000011701	ENSSMAG00000011627	ENSSMAG00000011603	ENSSMAG00000011589	ENSSMAG00000011577	ENSSMAG00000011531	ENSSMAG00000011250	ENSSMAG00000011228	ENSSMAG00000011155	galk2 (ENSSMAG00000011138)	ENSSMAG00000011058	sqor (ENSSMAG00000011006)	ctdspl2a (ENSSMAG00000010965)	ENSSMAG00000010948	ENSSMAG00000010909
Tongue sole	MODERN SPECIES	16	mlc1 (ENSCSEG00000009581)	ABTB3 (ENSCSEG00000009658)	cry1b (ENSCSEG00000009961)	zgc:153031 (ENSCSEG00000009990)	mterf2 (ENSCSEG00000009994)	ENSCSEG00000009997	CLPX (ENSCSEG00000010016)	ENSCSEG00000010037	CYP19A1 (ENSCSEG00000010049)	ENSCSEG00000010082	ENSCSEG00000010297	ENSCSEG00000012222	rsl24d1 (ENSCSEG00000012226) #7	ENSCSEG00000012233 ##15	RFX7 (ENSCSEG00000012248) #18	ENSCSEG00000012257 #22	ENSCSEG00000012280	ENSCSEG00000012323	fan1 (ENSCSEG00000012350)	TJP1 (ENSCSEG00000012367)	ENSCSEG00000012423	ENSCSEG00000012474	DUOXA2 (ENSCSEG00000012485)	ENSCSEG00000012508	ENSCSEG00000012548	ENSCSEG00000012779	galk2 (ENSCSEG00000012815)	sqor (ENSCSEG00000012839)	ctdspl2a (ENSCSEG00000012861)	ENSCSEG00000012870	parp16 (ENSCSEG00000012872)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00940000175727	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Greater amberjack	MODERN SPECIES	86	ENSSDUG00000020349	PRC1 (ENSSDUG00000020382)	ENSSDUG00000020503	CLPX (ENSSDUG00000020515)	ENSSDUG00000020586	ENSSDUG00000020621	CYP19A1 (ENSSDUG00000020660)	AP4E1 (ENSSDUG00000020679)	gnb5a (ENSSDUG00000020712)	MYO5C (ENSSDUG00000020773)	ENSSDUG00000020856	ARPP19 (ENSSDUG00000020912)	rsl24d1 (ENSSDUG00000020914) #7	ENSSDUG00000020925 ##15	RFX7 (ENSSDUG00000020956) #18	ENSSDUG00000020970 #22	ENSSDUG00000021009 #24	ENSSDUG00000021033	ENSSDUG00000021098	fan1 (ENSSDUG00000021147)	ENSSDUG00000021190	DUOXA2 (ENSSDUG00000021205)	ENSSDUG00000021231	TJP1 (ENSSDUG00000021279)	ENSSDUG00000021337	ENSSDUG00000021373	ENSSDUG00000021593	galk2 (ENSSDUG00000021615)	ATP8B4 (ENSSDUG00000021633)	sqor (ENSSDUG00000021664)	ctdspl2a (ENSSDUG00000021687)
Yellowtail amberjack	MODERN SPECIES	3044	ENSSLDG00000021335	prc1a (ENSSLDG00000021294)	CLPX (ENSSLDG00000021210)	ENSSLDG00000021174	CYP19A1 (ENSSLDG00000021152)	ENSSLDG00000021138	AP4E1 (ENSSLDG00000021092)	gnb5a (ENSSLDG00000021070)	MYO5C (ENSSLDG00000020988)	ENSSLDG00000020983	ENSSLDG00000017369	ARPP19 (ENSSLDG00000016803)	rsl24d1 (ENSSLDG00000016794) #7	ENSSLDG00000016770 ##15	RFX7 (ENSSLDG00000016750) #18	ENSSLDG00000016699 #22	ENSSLDG00000016669 #24	ENSSLDG00000016652	ENSSLDG00000016588
Barramundi perch	MODERN SPECIES	155	FIBIN (ENSLCAG00010009977)	ENSLCAG00010009974	ENSLCAG00010009972	PRC1 (ENSLCAG00010009874)	ENSLCAG00010009858	CLPX (ENSLCAG00010009631)	ENSLCAG00010009564	CYP19A1 (ENSLCAG00010009554)	AP4E1 (ENSLCAG00010009542)	gnb5a (ENSLCAG00010009320)	MYO5C (ENSLCAG00010009028)	ENSLCAG00010008938	rsl24d1 (ENSLCAG00010008920) #7	ENSLCAG00010008893 ##15	RFX7 (ENSLCAG00010008884) #18	ENSLCAG00010008877 #22	ENSLCAG00010008852 #24	ENSLCAG00010008841	ENSLCAG00010008802	fan1 (ENSLCAG00010008732)	ENSLCAG00010008719	DUOXA2 (ENSLCAG00010008717)	ENSLCAG00010008621	TJP1 (ENSLCAG00010008559)	ENSLCAG00010008529	ENSLCAG00010008507	ENSLCAG00010008473	galk2 (ENSLCAG00010008464)	ATP8B4 (ENSLCAG00010008460)	ENSLCAG00010008451	sqor (ENSLCAG00010008439)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000003134	ENSMAMG00000025866	ENSMAMG00000003072	ENSMAMG00000003045	ENSMAMG00000003026	ENSMAMG00000002983	ENSMAMG00000002873	CYP19A1 (ENSMAMG00000002830)	AP4E1 (ENSMAMG00000002748)	ENSMAMG00000002629	ENSMAMG00000002469	ENSMAMG00000002336	rsl24d1 (ENSMAMG00000002298) #7	ENSMAMG00000002182 ##15	ENSMAMG00000002170 #18	ENSMAMG00000002046 #22	ENSMAMG00000002000 #24	ENSMAMG00000001991	ENSMAMG00000001924	ENSMAMG00000001899	ENSMAMG00000001849	ENSMAMG00000001835	ENSMAMG00000001563	ENSMAMG00000001441	ENSMAMG00000001411	ENSMAMG00000001355	ENSMAMG00000001347	galk2 (ENSMAMG00000024476)	ENSMAMG00000001210	sqor (ENSMAMG00000001162)	ctdspl2a (ENSMAMG00000001091)
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Climbing perch	MODERN SPECIES	19	ANO3 (ENSATEG00000012392)	ENSATEG00000012462	ENSATEG00000012476	ENSATEG00000012493	ENSATEG00000012509	ENSATEG00000012556	ENSATEG00000012579	ENSATEG00000012648	CYP19A1 (ENSATEG00000012674)	AP4E1 (ENSATEG00000012741)	ENSATEG00000012804	ENSATEG00000012936	ENSATEG00000013127	ENSATEG00000013286 #7	RFX7 (ENSATEG00000013432) #18	TCF12 (ENSATEG00000013515) #22	CGNL1 (ENSATEG00000013524) #24	ENSATEG00000013554	ENSATEG00000013666	ENSATEG00000013701	ENSATEG00000013756	ENSATEG00000013798	ENSATEG00000013866	ENSATEG00000014175	ENSATEG00000014279	ENSATEG00000014309	ENSATEG00000014698	galk2 (ENSATEG00000014735)	ENSATEG00000014814	sqor (ENSATEG00000014947)	ctdspl2a (ENSATEG00000015013)
Siamese fighting fish	MODERN SPECIES	17	FIBIN (ENSBSLG00000003026)	ENSBSLG00000003027	SPI1 (ENSBSLG00000003030)	PRC1 (ENSBSLG00000003955)	ENSBSLG00000004364	CLPX (ENSBSLG00000004369)	ENSBSLG00000004428	CYP19A1 (ENSBSLG00000004445)	AP4E1 (ENSBSLG00000004476)	gnb5a (ENSBSLG00000004488)	MYO5C (ENSBSLG00000004509)	ENSBSLG00000005035	rsl24d1 (ENSBSLG00000006068) #7	ENSBSLG00000006085 ##15	RFX7 (ENSBSLG00000006148) #18	ENSBSLG00000006151 #22	ENSBSLG00000006158 #24	ENSBSLG00000006305	ENSBSLG00000006885	fan1 (ENSBSLG00000007701)	ENSBSLG00000008188	DUOXA2 (ENSBSLG00000008409)	TJP1 (ENSBSLG00000009281)	ENSBSLG00000014583	ENSBSLG00000014639	ENSBSLG00000014959	galk2 (ENSBSLG00000015004)	ATP8B4 (ENSBSLG00000015082)	sqor (ENSBSLG00000015322)	ctdspl2a (ENSBSLG00000015624)	ENSBSLG00000015700
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00390000018272.i	ENSGT00950000182953.B.b	ENSGT00950000183129.b.b.a.b	ENSGT00390000008859.b.d.r	ENSGT00940000154743.B.o.b	ENSGT00940000156195.q.a	ENSGT00940000165787.b	ENSGT00940000155357.a.b	ENSGT00940000157577.c.a	ENSGT00950000183129.a	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000157947.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT01000000214413.a.w.d
Fugu	MODERN SPECIES	21	ENSTRUG00000003583	ENSTRUG00000027273	ENSTRUG00000032998	pkmb (ENSTRUG00000004651)	HCN4 (ENSTRUG00000005413)	nptna (ENSTRUG00000005487)	ENSTRUG00000005591	ube2q2 (ENSTRUG00000005684)	scamp5a (ENSTRUG00000005905)	ENSTRUG00000032060	parp16 (ENSTRUG00000006022)	MYO5C (ENSTRUG00000023624)	rsl24d1 (ENSTRUG00000020840) #7	ENSTRUG00000032037 ##15	RFX7 (ENSTRUG00000008008) #18	ENSTRUG00000008110 #22	ENSTRUG00000026276 #24	ENSTRUG00000008399	ENSTRUG00000008552	fan1 (ENSTRUG00000008940)	ENSTRUG00000008971	DUOXA2 (ENSTRUG00000008990)	TJP1 (ENSTRUG00000009304)	ENSTRUG00000009755	ENSTRUG00000009950	galk2 (ENSTRUG00000010111)	sqor (ENSTRUG00000031074)	sqor (ENSTRUG00000031380)	gnb5a (ENSTRUG00000011047)	ENSTRUG00000011199	ENSTRUG00000029887
Tetraodon	MODERN SPECIES	4	cep290 (ENSTNIG00000013718)	TMTC3 (ENSTNIG00000013717)	kitlga (ENSTNIG00000013716)	ENSTNIG00000013715	PARP6 (ENSTNIG00000013714)	pkmb (ENSTNIG00000013713)	HCN4 (ENSTNIG00000013712)	nptna (ENSTNIG00000002413)	ube2q2 (ENSTNIG00000013711)	scamp5a (ENSTNIG00000013710)	parp16 (ENSTNIG00000013709)	MYO5C (ENSTNIG00000000200)	ENSTNIG00000013708	ENSTNIG00000013707 ##15	RFX7 (ENSTNIG00000013706) #18	ENSTNIG00000013705 #22	ENSTNIG00000013704 #24	ENSTNIG00000013703	ENSTNIG00000013702	fan1 (ENSTNIG00000013701)	DUOXA2 (ENSTNIG00000013700)	ENSTNIG00000013699	TJP1 (ENSTNIG00000013698)	ENSTNIG00000013697	slc27a2b (ENSTNIG00000013696)	ENSTNIG00000013695	galk2 (ENSTNIG00000013694)	sqor (ENSTNIG00000013693)	ctdspl2a (ENSTNIG00000013692)	AP4E1 (ENSTNIG00000013691)	CYP19A1 (ENSTNIG00000013690)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Ballan wrasse	MODERN SPECIES	15	ENSLBEG00000016868	ENSLBEG00000016834	PRC1 (ENSLBEG00000016804)	ENSLBEG00000016775	CLPX (ENSLBEG00000016716)	CYP19A1 (ENSLBEG00000016667)	ENSLBEG00000016629	gnb5a (ENSLBEG00000016541)	MYO5C (ENSLBEG00000016303)	ENSLBEG00000016205	ENSLBEG00000016151	ARPP19 (ENSLBEG00000016128)	rsl24d1 (ENSLBEG00000016102) #7	ENSLBEG00000015961 ##15	RFX7 (ENSLBEG00000015885) #18	ENSLBEG00000015832 #22	ENSLBEG00000015598	ENSLBEG00000015447	fan1 (ENSLBEG00000015400)	ENSLBEG00000015365	DUOXA2 (ENSLBEG00000015332)	ENSLBEG00000015043	TJP1 (ENSLBEG00000014646)	ENSLBEG00000014499	ENSLBEG00000014477	ENSLBEG00000014422	galk2 (ENSLBEG00000014384)	ENSLBEG00000014364	ENSLBEG00000014315	sqor (ENSLBEG00000014196)	sqor (ENSLBEG00000014109)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00940000154555.e.b	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Pike perch	MODERN SPECIES	6	FIBIN (ENSSLUG00000007668)	ENSSLUG00000007670	ENSSLUG00000007676	prc1a (ENSSLUG00000007735)	CLPX (ENSSLUG00000008477)	ENSSLUG00000008770	CYP19A1 (ENSSLUG00000008812)	AP4E1 (ENSSLUG00000008913)	gnb5a (ENSSLUG00000008945)	MYO5C (ENSSLUG00000009056)	ENSSLUG00000009160	ARPP19 (ENSSLUG00000009247)	rsl24d1 (ENSSLUG00000009251) #7	ENSSLUG00000009259 ##15	RFX7 (ENSSLUG00000009288) #18	ENSSLUG00000009294 #22	ENSSLUG00000009302 #24	ENSSLUG00000009312	ENSSLUG00000009405	fan1 (ENSSLUG00000011172)	ENSSLUG00000011194	DUOXA2 (ENSSLUG00000000107)	ENSSLUG00000000133	TJP1 (ENSSLUG00000000383)	ENSSLUG00000000919	ENSSLUG00000000984	ENSSLUG00000001017	galk2 (ENSSLUG00000001038)	ATP8B4 (ENSSLUG00000001069)	sqor (ENSSLUG00000001087)	ctdspl2a (ENSSLUG00000001112)
Channel bull blenny	MODERN SPECIES	20	FIBIN (ENSCGOG00000010106)	ENSCGOG00000010110	ENSCGOG00000010113	PRC1 (ENSCGOG00000010115)	CLPX (ENSCGOG00000010131)	ENSCGOG00000010724	CYP19A1 (ENSCGOG00000010768)	AP4E1 (ENSCGOG00000012488)	gnb5a (ENSCGOG00000012653)	ENSCGOG00000016991	ENSCGOG00000016993	ENSCGOG00000017037	rsl24d1 (ENSCGOG00000018071) #7	ENSCGOG00000018089 ##15	RFX7 (ENSCGOG00000018104) #18	ENSCGOG00000018106 #22	ENSCGOG00000018108 #24	ENSCGOG00000018113	ENSCGOG00000018146	fan1 (ENSCGOG00000019190)	ENSCGOG00000019390	DUOXA2 (ENSCGOG00000019395)	ENSCGOG00000019406	TJP1 (ENSCGOG00000019446)	ENSCGOG00000019723	ENSCGOG00000020348	ENSCGOG00000020432	galk2 (ENSCGOG00000020452)	ATP8B4 (ENSCGOG00000020711)	sqor (ENSCGOG00000021205)	ENSCGOG00000021208
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000156257	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000161792	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Lumpfish	MODERN SPECIES	21	ANO3 (ENSCLMG00005017654)	FIBIN (ENSCLMG00005017652)	ENSCLMG00005017651	SPI1 (ENSCLMG00005017650)	ENSCLMG00005017452	CLPX (ENSCLMG00005016695)	ENSCLMG00005016692	CYP19A1 (ENSCLMG00005016557)	AP4E1 (ENSCLMG00005016546)	gnb5a (ENSCLMG00005016537)	MYO5C (ENSCLMG00005015966)	ENSCLMG00005013152	rsl24d1 (ENSCLMG00005013139) #7	ENSCLMG00005013117 ##15	RFX7 (ENSCLMG00005013116) #18	TCF12 (ENSCLMG00005013115) #22	CGNL1 (ENSCLMG00005013114) #24	ENSCLMG00005013113	ENSCLMG00005009268	fan1 (ENSCLMG00005009101)	ENSCLMG00005009013	DUOXA2 (ENSCLMG00005009008)	ENSCLMG00005009006	TJP1 (ENSCLMG00005003202)	ENSCLMG00005002857	ENSCLMG00005012557	galk2 (ENSCLMG00005012546)	ATP8B4 (ENSCLMG00005012542)	ENSCLMG00005012541	sqor (ENSCLMG00005012524)	ctdspl2a (ENSCLMG00005012453)
Stickleback	MODERN SPECIES	14	GAS2 (ENSGACG00000005909)	ANO3 (ENSGACG00000005915)	FIBIN (ENSGACG00000005940)	ENSGACG00000005942	ENSGACG00000005950	PRC1 (ENSGACG00000005957)	CLPX (ENSGACG00000005974)	CYP19A1 (ENSGACG00000005982)	AP4E1 (ENSGACG00000005988)	gnb5a (ENSGACG00000005996)	MYO5C (ENSGACG00000006001)	ENSGACG00000006025	rsl24d1 (ENSGACG00000006058) #7	ENSGACG00000006072 ##15	RFX7 (ENSGACG00000006090) #18	ENSGACG00000006101 #22	ENSGACG00000006110 #24	ENSGACG00000006120	ENSGACG00000006135	fan1 (ENSGACG00000006141)	ENSGACG00000006154	DUOXA2 (ENSGACG00000006158)	ENSGACG00000006163	TJP1 (ENSGACG00000006202)	ENSGACG00000006219	ENSGACG00000006224	galk2 (ENSGACG00000006232)	sqor (ENSGACG00000006260)	ctdspl2a (ENSGACG00000006281)	ENSGACG00000006311	parp16 (ENSGACG00000006315)
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00940000164068.a.b.a.a.b	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b
Gilthead seabream	MODERN SPECIES	22	FIBIN (ENSSAUG00010009798)	ENSSAUG00010009800	ENSSAUG00010009801	PRC1 (ENSSAUG00010009811)	ENSSAUG00010009847	CLPX (ENSSAUG00010009850)	ENSSAUG00010009856	CYP19A1 (ENSSAUG00010009877)	AP4E1 (ENSSAUG00010009924)	gnb5a (ENSSAUG00010010113)	MYO5C (ENSSAUG00010011056)	ENSSAUG00010011337	rsl24d1 (ENSSAUG00010011564) #7	ENSSAUG00010011566 ##15	RFX7 (ENSSAUG00010011575) #18	ENSSAUG00010011578 #22	ENSSAUG00010011580 #24	ENSSAUG00010011585	ENSSAUG00010011595	fan1 (ENSSAUG00010011671)	ENSSAUG00010012259	DUOXA2 (ENSSAUG00010012261)	ENSSAUG00010012266	TJP1 (ENSSAUG00010012694)	ENSSAUG00010012871	ENSSAUG00010013127	galk2 (ENSSAUG00010013293)	ENSSAUG00010013301	ATP8B4 (ENSSAUG00010013340)	sqor (ENSSAUG00010014532)	ctdspl2a (ENSSAUG00010014960)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000007623.d	ENSGT00390000015299.a.a.b	ENSGT00940000159754.b	ENSGT00390000009453.fb.a	ENSGT00390000008092.b.a.a	ENSGT00390000017625	ENSGT00940000158020.c	ENSGT00840000129915.a	ENSGT00950000182838.C	ENSGT01000000214413.a.w.d	ENSGT00940000157971	ENSGT00940000155347.a.a	ENSGT00950000183105.B #7	ENSGT00940000155943.b ##15	ENSGT01050000244970.b.j.b #18	ENSGT00940000155047.ac.b #22	ENSGT00940000154489.A.d #24	ENSGT00940000164919.a	ENSGT00940000164516.b	ENSGT00390000018637	ENSGT00940000158943.d	ENSGT00390000008240	ENSGT00940000163963	ENSGT00940000155164.a.a	ENSGT00940000164068.a.a	ENSGT00950000182870.b.b	ENSGT00950000183187.A	ENSGT00940000160101	ENSGT00390000019406	ENSGT01040000240503.A.a.a.d.b	ENSGT00950000183129.a
European seabass	MODERN SPECIES	19	fancf (ENSDLAG00005016261)	GAS2 (ENSDLAG00005033063)	svip (ENSDLAG00005016338)	ANO3 (ENSDLAG00005016369)	ENSDLAG00005017235	ENSDLAG00005029625	ENSDLAG00005017293	ENSDLAG00005017850	ENSDLAG00005017876	ENSDLAG00005032819	ENSDLAG00005018519	ENSDLAG00005018686	ENSDLAG00005020149	ENSDLAG00005020998 ##15	RFX7 (ENSDLAG00005021118) #18	TCF12 (ENSDLAG00005001326) #22	CGNL1 (ENSDLAG00005001338) #24	ENSDLAG00005001343	ENSDLAG00005001394	ENSDLAG00005001615	ENSDLAG00005001747	ENSDLAG00005001783	ENSDLAG00005001931	ENSDLAG00005005540	ENSDLAG00005008643	ENSDLAG00005009178	galk2 (ENSDLAG00005009221)	ENSDLAG00005009380	ctdspl2a (ENSDLAG00005033328)	ENSDLAG00005033337	ENSDLAG00005031814
Large yellow croaker	MODERN SPECIES	492	FIBIN (ENSLCRG00005023664)	ENSLCRG00005023662	ENSLCRG00005023661	PRC1 (ENSLCRG00005023657)	ENSLCRG00005023654	CLPX (ENSLCRG00005023630)	ENSLCRG00005023620	CYP19A1 (ENSLCRG00005023595)	AP4E1 (ENSLCRG00005023592)	gnb5a (ENSLCRG00005023580)	MYO5C (ENSLCRG00005023533)	ENSLCRG00005022869	rsl24d1 (ENSLCRG00005022847) #7	ENSLCRG00005022846 ##15	RFX7 (ENSLCRG00005022845) #18	TCF12 (ENSLCRG00005022844) #22	ENSLCRG00005022842 #24	ENSLCRG00005022838	ENSLCRG00005022808	fan1 (ENSLCRG00005022806)	ENSLCRG00005022805	DUOXA2 (ENSLCRG00005022804)	ENSLCRG00005022789	TJP1 (ENSLCRG00005022027)	ENSLCRG00005021862	ENSLCRG00005021849	galk2 (ENSLCRG00005021840)	ATP8B4 (ENSLCRG00005020846)	sqor (ENSLCRG00005020822)	ctdspl2a (ENSLCRG00005020816)	parp16 (ENSLCRG00005020812)
Cod	DUPLICATION
Cod	MODERN SPECIES	22	ENSGMOG00000026485	ENSGMOG00000034145	mrpl23 (ENSGMOG00000036635)	ENSGMOG00000016592	ENSGMOG00000010115	ENSGMOG00000028030	GLDN (ENSGMOG00000036735)	CYP19A1 (ENSGMOG00000010165)	AP4E1 (ENSGMOG00000010180)	ENSGMOG00000003847	ENSGMOG00000003867	ENSGMOG00000003963	rsl24d1 (ENSGMOG00000004101) #7	ENSGMOG00000004120 ##15	ENSGMOG00000025060 #18	ENSGMOG00000034860 #22	ENSGMOG00000004222 #24	ENSGMOG00000004272	ENSGMOG00000004289	ENSGMOG00000004319	ENSGMOG00000004377	ENSGMOG00000004550	ENSGMOG00000004566	ENSGMOG00000004637	ENSGMOG00000004720	ENSGMOG00000004736	galk2 (ENSGMOG00000004809)	sqor (ENSGMOG00000012678)	ctdspl2a (ENSGMOG00000018902)	ENSGMOG00000018865	ENSGMOG00000018820
Cod	MODERN SPECIES	5	ENSGMOG00000004788	ENSGMOG00000015699	CCND1 (ENSGMOG00000015686)	lto1 (ENSGMOG00000015712)	fgf19 (ENSGMOG00000020176)	fgf4 (ENSGMOG00000029653)	fgf3 (ENSGMOG00000024399)	zgc:153993 (ENSGMOG00000014875)	ano1a (ENSGMOG00000014890)	MNS1 (ENSGMOG00000007358) #20	ENSGMOG00000007344	ENSGMOG00000025531	ENSGMOG00000026141	ENSGMOG00000031396	ENSGMOG00000024028	TCF12 (ENSGMOG00000015710) #22	CGNL1 (ENSGMOG00000015651) #24	MYZAP (ENSGMOG00000015621) #25	polr2m (ENSGMOG00000025377) ##25	aldh1a2 (ENSGMOG00000015590) #26	ENSGMOG00000015575	lipca (ENSGMOG00000015559) #29	adam10a (ENSGMOG00000015530)	MINDY2 (ENSGMOG00000015511) #31	sltm (ENSGMOG00000015455) #32	RNF111 (ENSGMOG00000015412) #33	ENSGMOG00000035707	ENSGMOG00000015360 #35	ENSGMOG00000015321	ENSGMOG00000024406	ENSGMOG00000036708
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Otomorpha	ANCESTRAL SPECIES	73	ENSGT00940000156586	ENSGT00940000159754.a	ENSGT00940000157349	ENSGT00390000015299.a.a.a	ENSGT00940000155755.a.b	ENSGT00940000155891.c.b	ENSGT00940000155692.j	ENSGT00390000011846	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00940000156912.c.a	ENSGT00950000182885.A.a.e	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Denticle herring	MODERN SPECIES	8	DGKZ (ENSDCDG00000028717)	PHF21A (ENSDCDG00000028899)	PRDM11 (ENSDCDG00000028913)	ENSDCDG00000028914	ENSDCDG00000028919	BET1L (ENSDCDG00000028921)	deaf1 (ENSDCDG00000028922)	drd4a (ENSDCDG00000028923)	GLDN (ENSDCDG00000028925)	CYP19A1 (ENSDCDG00000028928)	AP4E1 (ENSDCDG00000028986)	MYO5C (ENSDCDG00000029048)	rsl24d1 (ENSDCDG00000030553) #7	ENSDCDG00000030559 ##15	RFX7 (ENSDCDG00000030565) #18	ENSDCDG00000030566 #22	ENSDCDG00000030567 #22	ENSDCDG00000030570 #24	ENSDCDG00000030571	LIPC (ENSDCDG00000030587) #29	ENSDCDG00000030856	ENSDCDG00000031205	fan1 (ENSDCDG00000031216)	ENSDCDG00000031282	DUOXA2 (ENSDCDG00000031289)	ENSDCDG00000031314	TJP1 (ENSDCDG00000031679)	ENSDCDG00000034464	cops2 (ENSDCDG00000034467)	galk2 (ENSDCDG00000034476)	ATP8B4 (ENSDCDG00000034517)
Otophysi	ANCESTRAL SPECIES	114	ENSGT01030000234623.a.b.b	ENSGT00940000169559	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.a.a.a.b.d.a	ENSGT00940000158376	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701.a	ENSGT01030000235224	ENSGT00390000009048.a.a.g	ENSGT00390000017828	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Characiphysae	ANCESTRAL SPECIES	6	ENSGT00390000008502	ENSGT01030000234623.a.b.b	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.a.a.a.b.d.a	ENSGT00940000158376	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701.a	ENSGT01030000235224	ENSGT00390000009048.a.a.g	ENSGT00390000017828	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Channel catfish	MODERN SPECIES	19	MFAP1 (ENSIPUG00000022735)	hypk (ENSIPUG00000022746)	serinc4 (ENSIPUG00000022752)	adamtsl5 (ENSIPUG00000022764)	ENSIPUG00000022770	iqgap1 (ENSIPUG00000022780)	cartl (ENSIPUG00000022865)	cart3 (ENSIPUG00000022866)	cdkn2aip (ENSIPUG00000022869)	tubgcp4 (ENSIPUG00000022874)	tp53bp1 (ENSIPUG00000022895)	map1a (ENSIPUG00000022952)	ppip5k1 (ENSIPUG00000022957)	mtfmt (ENSIPUG00000022976)	znf280d (ENSIPUG00000022987)	tcf12 (ENSIPUG00000023017) #22	cgnl1 (ENSIPUG00000023094) #24	myzap (ENSIPUG00000023098) #25	polr2m (ENSIPUG00000023112) ##25	aldh1a2 (ENSIPUG00000023122) #26	aqp9b (ENSIPUG00000023133)	lipca (ENSIPUG00000023135) #29	ADAM10 (ENSIPUG00000023145)	fam63b (ENSIPUG00000023190) #31	sltm (ENSIPUG00000023201) #32	ENSIPUG00000023207	ENSIPUG00000023209	RNF111 (ENSIPUG00000023212) #33	ccnb2 (ENSIPUG00000023228) #34	myo1e (ENSIPUG00000023240) #35	ENSIPUG00000023270
Characiphysae_b	ANCESTRAL SPECIES	5	ENSGT00390000008502	ENSGT01030000234623.a.b.b	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.a.a.a.b.d.a	ENSGT00940000158376	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701.a	ENSGT01030000235224	ENSGT00390000009048.a.a.g	ENSGT00390000017828	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Characoidei	ANCESTRAL SPECIES	4	ENSGT00390000008502	ENSGT01030000234623.a.b.b	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.a.a.a.b.d.a	ENSGT00940000158376	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701.a	ENSGT01030000235224	ENSGT00390000009048.a.a.g	ENSGT00390000017828	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602.e #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000155405 #34	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000011359	ENSGT00940000153941.b
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	243																tcf12 (ENSAMXG00000033082) #22
Mexicana tetra	MODERN SPECIES	46					cart3 (ENSAMXG00000030222)	ENSAMXG00000038097	cdkn2aip (ENSAMXG00000025082)	tubgcp4 (ENSAMXG00000017984)	tp53bp1 (ENSAMXG00000017999)	MAP1A (ENSAMXG00000029574)	ENSAMXG00000030202	PPIP5K1 (ENSAMXG00000008287)	mtfmt (ENSAMXG00000038555)	ENSAMXG00000039713	ENSAMXG00000035092	tcf12 (ENSAMXG00000030769) #22	rnf111 (ENSAMXG00000012431) #33	ccnb2 (ENSAMXG00000012440) #34	ENSAMXG00000012455	ENSAMXG00000037707	MYO1E (ENSAMXG00000012478) #35	mtmr10 (ENSAMXG00000011964)	mphosph10 (ENSAMXG00000005318)	mcee (ENSAMXG00000033887)	ENSAMXG00000043929	APBA2 (ENSAMXG00000005296)	sord (ENSAMXG00000043919)	sord (ENSAMXG00000005287)	ca7 (ENSAMXG00000005270)	ENSAMXG00000037925	ENSAMXG00000039437
Red-bellied piranha	MODERN SPECIES	189	hypk (ENSPNAG00000022212)	SERINC4 (ENSPNAG00000022181)	ENSPNAG00000022147	ENSPNAG00000022111	iqgap1 (ENSPNAG00000022042)	ENSPNAG00000021939	ENSPNAG00000021921	cart3 (ENSPNAG00000021748)	cdkn2aip (ENSPNAG00000021732)	tubgcp4 (ENSPNAG00000021717)	tp53bp1 (ENSPNAG00000021644)	MAP1A (ENSPNAG00000021411)	PPIP5K1 (ENSPNAG00000021348)	mtfmt (ENSPNAG00000021080)	ENSPNAG00000021069	tcf12 (ENSPNAG00000020969) #22	CGNL1 (ENSPNAG00000020821) #24	MYZAP (ENSPNAG00000020797) #25	polr2m (ENSPNAG00000003658) ##25	aldh1a2 (ENSPNAG00000020770) #26	aqp9b (ENSPNAG00000020715)	lipca (ENSPNAG00000020703) #29	adam10a (ENSPNAG00000020673)	MINDY2 (ENSPNAG00000020596) #31	sltm (ENSPNAG00000020563) #32	rnf111 (ENSPNAG00000020539) #33	ccnb2 (ENSPNAG00000020437) #34	MYO1E (ENSPNAG00000020407) #35
Electric eel	MODERN SPECIES	108						iqgap1 (ENSEEEG00000017710)	cartl (ENSEEEG00000017715)	cart3 (ENSEEEG00000017720)	cdkn2aip (ENSEEEG00000017727)	tubgcp4 (ENSEEEG00000017732)	ENSEEEG00000017813	PPIP5K1 (ENSEEEG00000017814)	ENSEEEG00000017815	mtfmt (ENSEEEG00000017817)	ENSEEEG00000017822	tcf12 (ENSEEEG00000017827) #22	CGNL1 (ENSEEEG00000017837) #24	MYZAP (ENSEEEG00000017838) #25	polr2m (ENSEEEG00000017839) ##25	aldh1a2 (ENSEEEG00000017851) #26	aqp9b (ENSEEEG00000018122)	lipca (ENSEEEG00000018189) #29	adam10a (ENSEEEG00000018192)	MINDY2 (ENSEEEG00000018217) #31	sltm (ENSEEEG00000018219) #32	rnf111 (ENSEEEG00000018220) #33	ccnb2 (ENSEEEG00000018221) #34	MYO1E (ENSEEEG00000018229) #35	mtmr10 (ENSEEEG00000018401)	mphosph10 (ENSEEEG00000018436)	mcee (ENSEEEG00000018489)
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT01030000234623.a.b.b	ENSGT00940000169559	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.a.a.a.b.d.a	ENSGT00940000158376	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701.a	ENSGT01030000235224	ENSGT00390000009048.a.a.g	ENSGT00390000017828	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a	ENSGT01080000257410.A.f.l	ENSGT00940000157918	ENSGT00390000008139	ENSGT00940000163301.c.a.a.a	ENSGT00880000138014.a	ENSGT00940000158136	ENSGT00990000203752	ENSGT00940000160940	ENSGT00510000050937	ENSGT00950000183118.A.c.b.a	ENSGT00940000157843
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	22	znf609b (ENSDARG00000104530)	trip4 (ENSDARG00000098074)	ENSDARG00000104440	ENSDARG00000104332	ENSDARG00000100131	cdh1 (ENSDARG00000102750)	cart3 (ENSDARG00000035852)	cdkn2aip (ENSDARG00000035853)	tubgcp4 (ENSDARG00000005374)	tp53bp1 (ENSDARG00000079000)	MAP1A (ENSDARG00000059601)	ENSDARG00000115636	PPIP5K1 (ENSDARG00000076143)	mtfmt (ENSDARG00000005448)	ENSDARG00000077013	tcf12 (ENSDARG00000004714) #22	CGNL1 (ENSDARG00000015805) #24	MYZAP (ENSDARG00000075017) #25	ENSDARG00000087191	gnrhr2 (ENSDARG00000003553)	SLCO3A1 (ENSDARG00000068296)	katnb1 (ENSDARG00000005456)	tmem208 (ENSDARG00000068291)	ENSDARG00000091514	si:dkey-286h2.3 (ENSDARG00000068290)	ENSDARG00000092091	ENSDARG00000068283	cyp2x10.2 (ENSDARG00000006501)	si:ch211-122f10.4 (ENSDARG00000052074)	slc38a7 (ENSDARG00000012002)	ENSDARG00000113187
Zebrafish	MODERN SPECIES	13	rln1 (ENSDARG00000103762)	plgrkt (ENSDARG00000100789)	lhfpl2a (ENSDARG00000009653)	ZNF462 (ENSDARG00000112909)	rad23b (ENSDARG00000021550)	klf4 (ENSDARG00000079922)	nop14 (ENSDARG00000098859)	ENSDARG00000068589	ENSDARG00000100549	oaz1b (ENSDARG00000104782)	txnl1 (ENSDARG00000011921)	NARS1 (ENSDARG00000061100)	ENSDARG00000089844	ENSDARG00000102894	ENSDARG00000110653	ENSDARG00000113371 #22	TCF4 (ENSDARG00000107408)	RAB27B (ENSDARG00000087762)	wdr91 (ENSDARG00000015153)	vmo1b (ENSDARG00000045299)	zgc:152948 (ENSDARG00000071487)	fech (ENSDARG00000003462)	ONECUT2 (ENSDARG00000090387)	st8sia3 (ENSDARG00000045301)	WDR7 (ENSDARG00000100274)	add1 (ENSDARG00000103962)	ENSDARG00000099717	ENSDARG00000100324	si:rp71-1h20.5 (ENSDARG00000098176)	ENSDARG00000100179	ENSDARG00000104798
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155047.bc.e #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155047.bc.e #22
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES		mfap1 (ENSCCRG00000006142)	hypk (ENSCCRG00000006146)	SERINC4 (ENSCCRG00000006151)	ENSCCRG00000006162	ENSCCRG00000006169	iqgap1 (ENSCCRG00000006267)	cartl (ENSCCRG00000027432)	cart3 (ENSCCRG00000044218)	cdkn2aip (ENSCCRG00000063500)	tubgcp4 (ENSCCRG00000044230)	tp53bp1 (ENSCCRG00000019255)	MAP1A (ENSCCRG00000040224)	PPIP5K1 (ENSCCRG00000019405)	mtfmt (ENSCCRG00000020025)	ENSCCRG00000059617	ENSCCRG00000061281 #22	tcf12 (ENSCCRG00000020670) #22	ENSCCRG00000020687 #24	MYZAP (ENSCCRG00000020691) #25	gnrhr2 (ENSCCRG00000041602)	ENSCCRG00000010955	katnb1 (ENSCCRG00000059520)	si:ch211-122f10.4 (ENSCCRG00000026805)	slc38a7 (ENSCCRG00000066966)	got2b (ENSCCRG00000065897)	bmp15 (ENSCCRG00000077691)	leap2 (ENSCCRG00000032625)	PHKA1 (ENSCCRG00000049375)	hdac8 (ENSCCRG00000026960)	cited1 (ENSCCRG00000056658)	rps4x (ENSCCRG00000026927)
Common carp reference	MODERN SPECIES	6	vps33b (ENSCCRG00000000935)	mfap1 (ENSCCRG00000001619)	ENSCCRG00000063374	SERINC4 (ENSCCRG00000001644)	ENSCCRG00000001699	ENSCCRG00000063848	iqgap1 (ENSCCRG00000012910)	cartl (ENSCCRG00000013768)	cart3 (ENSCCRG00000048622)	cdkn2aip (ENSCCRG00000048627)	tubgcp4 (ENSCCRG00000048638)	tp53bp1 (ENSCCRG00000052375)	PPIP5K1 (ENSCCRG00000051335)	ENSCCRG00000068619	ENSCCRG00000059836	ENSCCRG00000065458 #22	tcf12 (ENSCCRG00000020680) #22	ENSCCRG00000022482 #24	MYZAP (ENSCCRG00000051158) #25	ENSCCRG00000051160	ENSCCRG00000026913	katnb1 (ENSCCRG00000026881)	tmem208 (ENSCCRG00000026861)	ENSCCRG00000026857	si:ch211-122f10.4 (ENSCCRG00000026853)	slc38a7 (ENSCCRG00000026852)	got2b (ENSCCRG00000075394)	bmp15 (ENSCCRG00000032632)	leap2 (ENSCCRG00000049935)	PHKA1 (ENSCCRG00000027034)	hdac8 (ENSCCRG00000053840)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	399	ENSGT00390000008502.t	ENSGT00390000008502.s.a	ENSGT01030000234623.a.b.b.d	ENSGT00940000169559	ENSGT00940000160456.w	ENSGT00390000010652.C.jc	ENSGT00950000183076.a.b.b.a.a.r	ENSGT00940000171332.a	ENSGT00390000018319.a.a.a.b.d.a.c	ENSGT00940000158376.q	ENSGT00390000011891.g	ENSGT00940000158701.a.c	ENSGT00390000009048.a.a.g.c	ENSGT00390000017828.c	ENSGT00940000163854.b.b	ENSGT00940000155047.bc.f.a #22	ENSGT00940000154489.A.c.b #24	ENSGT00950000183065.A.i #25	ENSGT01050000244841.A.a.b.qb.a.c	ENSGT01080000257410.A.f.l.f	ENSGT00940000157918.t	ENSGT00390000008139.a	ENSGT00880000138014.a.l	ENSGT00940000158136.f	ENSGT00950000183082.a.j.a	ENSGT00990000203752.a
Cyprininae_a	ANCESTRAL SPECIES	128	ENSGT00390000008502.s.a	ENSGT01030000234623.a.b.b.d	ENSGT00940000169559	ENSGT00940000160456.w	ENSGT00390000010652.C.jc	ENSGT00950000183076.a.b.b.a.a.r	ENSGT00940000171332.a	ENSGT00390000018319.a.a.a.b.d.a.c	ENSGT00940000158376.q	ENSGT00940000156677.j	ENSGT00390000011891.g	ENSGT00940000158701.a.c	ENSGT00390000009048.a.a.g.c	ENSGT00390000017828.c	ENSGT00940000163854.b.b	ENSGT00940000155047.bc.f.a #22	ENSGT00940000154489.A.c.b #24	ENSGT00950000183065.A.i #25	ENSGT01050000244841.A.a.b.qb.a.c	ENSGT01080000257410.A.f.l.f	ENSGT00940000157918.t	ENSGT00390000008139.a	ENSGT00880000138014.a.l	ENSGT00940000158136.f	ENSGT00950000183082.a.j.a	ENSGT00990000203752.a	ENSGT00940000160940.m	ENSGT00510000050937.n.a.a	ENSGT00950000183118.A.c.b.a.b	ENSGT00940000157843.m	ENSGT00530000063624.B.d
Golden-line barbel	MODERN SPECIES	218	hypk (ENSSGRG00000051212)	SERINC4 (ENSSGRG00000051213)	ENSSGRG00000051214	ENSSGRG00000051215	ENSSGRG00000051216	iqgap1 (ENSSGRG00000051222)	cartl (ENSSGRG00000051376)	cart3 (ENSSGRG00000051378)	cdkn2aip (ENSSGRG00000051385)	tubgcp4 (ENSSGRG00000051403)	tp53bp1 (ENSSGRG00000051579)	MAP1A (ENSSGRG00000051581)	PPIP5K1 (ENSSGRG00000051613)	mtfmt (ENSSGRG00000052188)	ENSSGRG00000052194	tcf12 (ENSSGRG00000052202) #22	ENSSGRG00000052316 #24	MYZAP (ENSSGRG00000052320) #25	gnrhr2 (ENSSGRG00000052324)	SLCO3A1 (ENSSGRG00000052372)	katnb1 (ENSSGRG00000052373)	tmem208 (ENSSGRG00000052393)	ENSSGRG00000052394	si:ch211-122f10.4 (ENSSGRG00000052424)	slc38a7 (ENSSGRG00000052427)	slc38a7 (ENSSGRG00000052432)	got2b (ENSSGRG00000052456)	ENSSGRG00000052693	bmp15 (ENSSGRG00000052694)	leap2 (ENSSGRG00000052695)	PHKA1 (ENSSGRG00000052735)
Common carp reference	MODERN SPECIES		hypk (ENSCCRG00000006146)	SERINC4 (ENSCCRG00000006151)	ENSCCRG00000006162	ENSCCRG00000006169	iqgap1 (ENSCCRG00000006267)	cartl (ENSCCRG00000027432)	cart3 (ENSCCRG00000044218)	cdkn2aip (ENSCCRG00000063500)	tubgcp4 (ENSCCRG00000044230)	tp53bp1 (ENSCCRG00000019255)	MAP1A (ENSCCRG00000040224)	PPIP5K1 (ENSCCRG00000019405)	mtfmt (ENSCCRG00000020025)	ENSCCRG00000059617	ENSCCRG00000061281 #22	tcf12 (ENSCCRG00000020670) #22	ENSCCRG00000020687 #24	MYZAP (ENSCCRG00000020691) #25	gnrhr2 (ENSCCRG00000041602)	ENSCCRG00000010955	katnb1 (ENSCCRG00000059520)	si:ch211-122f10.4 (ENSCCRG00000026805)	slc38a7 (ENSCCRG00000066966)	got2b (ENSCCRG00000065897)	bmp15 (ENSCCRG00000077691)	leap2 (ENSCCRG00000032625)	PHKA1 (ENSCCRG00000049375)	hdac8 (ENSCCRG00000026960)	cited1 (ENSCCRG00000056658)	rps4x (ENSCCRG00000026927)	ENSCCRG00000063739
Goldfish	MODERN SPECIES	47	rasl11a (ENSCARG00000010186)	gc2 (ENSCARG00000010296)	IRS4 (ENSCARG00000012558)	COL4A5 (ENSCARG00000012569)	COL4A6 (ENSCARG00000012637)	ankrd46b (ENSCARG00000012841)	PAQR9 (ENSCARG00000012850)	pcolceb (ENSCARG00000012861)	per1b (ENSCARG00000012891)	ENSCARG00000013008	PCDH7 (ENSCARG00000013375)	MAP1A (ENSCARG00000013378)	PPIP5K1 (ENSCARG00000013418)	mtfmt (ENSCARG00000013599)	ENSCARG00000013615	tcf12 (ENSCARG00000013676) #22	CGNL1 (ENSCARG00000014179) #24	MYZAP (ENSCARG00000014192) #25	gnrhr2 (ENSCARG00000014205)	SLCO3A1 (ENSCARG00000014218)	katnb1 (ENSCARG00000014248)	tmem208 (ENSCARG00000014294)	si:ch211-122f10.4 (ENSCARG00000014301)	slc38a7 (ENSCARG00000014315)	got2b (ENSCARG00000014368)	ENSCARG00000015321	bmp15 (ENSCARG00000015333)	leap2 (ENSCARG00000015338)	PHKA1 (ENSCARG00000015395)	hdac8 (ENSCARG00000016264)	cited1 (ENSCARG00000016627)
Cyprininae	ANCESTRAL SPECIES	35	ENSGT00690000102225.q.a	ENSGT00390000008502.s.b	ENSGT01030000234623.a.b.b.c	ENSGT00940000160456.x	ENSGT00390000010652.C.kc	ENSGT00950000183076.a.b.b.a.a.q	ENSGT00940000171332.b	ENSGT00390000018319.a.a.a.b.d.a.d	ENSGT00940000158376.r	ENSGT00940000156677	ENSGT00390000011891.h	ENSGT00940000158701.a.d	ENSGT00390000009048.a.a.g.d	ENSGT00390000017828.d	ENSGT00940000163854.b.a	ENSGT00940000155047.bc.f.b #22	ENSGT00940000154489.A.c.a #24	ENSGT00950000183065.A.j #25	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.d	ENSGT01080000257410.A.f.l.e	ENSGT00940000157918.s	ENSGT00390000008139.b	ENSGT00940000163301.c.a.a.a	ENSGT00880000138014.a.k	ENSGT00940000158136.e	ENSGT00950000183082.a.j.b	ENSGT00990000203752.b	ENSGT00940000160940	ENSGT00510000050937.n.a.a	ENSGT00950000183118.A.c.b.a.b
Cyprininae_a	ANCESTRAL SPECIES	55	ENSGT00690000102225.q.a	ENSGT00390000008502.s.b	ENSGT01030000234623.a.b.b.c	ENSGT00940000160456.x	ENSGT00390000010652.C.kc	ENSGT00950000183076.a.b.b.a.a.q	ENSGT00940000171332.b	ENSGT00390000018319.a.a.a.b.d.a.d	ENSGT00940000158376.r	ENSGT00940000156677.i	ENSGT00390000011891.h	ENSGT00940000158701.a.d	ENSGT00390000009048.a.a.g.d	ENSGT00390000017828.d	ENSGT00940000163854.b.a	ENSGT00940000155047.bc.f.b #22	ENSGT00940000154489.A.c.a #24	ENSGT00950000183065.A.j #25	ENSGT00390000009995	ENSGT01050000244841.A.a.b.qb.a.d	ENSGT01080000257410.A.f.l.e	ENSGT00940000157918.s	ENSGT00390000008139.b	ENSGT00940000163301.c.a.a.a	ENSGT00880000138014.a.k	ENSGT00940000158136.e	ENSGT00950000183082.a.j.b	ENSGT00990000203752.b	ENSGT00940000160940.n	ENSGT00510000050937.n.a.b	ENSGT00950000183118.A.c.b.a.a
Common carp reference	MODERN SPECIES	6	mfap1 (ENSCCRG00000001619)	ENSCCRG00000063374	SERINC4 (ENSCCRG00000001644)	ENSCCRG00000001699	ENSCCRG00000063848	iqgap1 (ENSCCRG00000012910)	cartl (ENSCCRG00000013768)	cart3 (ENSCCRG00000048622)	cdkn2aip (ENSCCRG00000048627)	tubgcp4 (ENSCCRG00000048638)	tp53bp1 (ENSCCRG00000052375)	PPIP5K1 (ENSCCRG00000051335)	ENSCCRG00000068619	ENSCCRG00000059836	ENSCCRG00000065458 #22	tcf12 (ENSCCRG00000020680) #22	ENSCCRG00000022482 #24	MYZAP (ENSCCRG00000051158) #25	ENSCCRG00000051160	ENSCCRG00000026913	katnb1 (ENSCCRG00000026881)	tmem208 (ENSCCRG00000026861)	ENSCCRG00000026857	si:ch211-122f10.4 (ENSCCRG00000026853)	slc38a7 (ENSCCRG00000026852)	got2b (ENSCCRG00000075394)	bmp15 (ENSCCRG00000032632)	leap2 (ENSCCRG00000049935)	PHKA1 (ENSCCRG00000027034)	hdac8 (ENSCCRG00000053840)	cited1 (ENSCCRG00000076818)
Golden-line barbel	MODERN SPECIES	283	ENSSGRG00000014595	ENSSGRG00000014597	ENSSGRG00000014598	ENSSGRG00000014600	ENSSGRG00000014601	iqgap1 (ENSSGRG00000014617)	cartl (ENSSGRG00000014974)	cart3 (ENSSGRG00000014975)	cdkn2aip (ENSSGRG00000014976)	tubgcp4 (ENSSGRG00000014980)	tp53bp1 (ENSSGRG00000015286)	MAP1A (ENSSGRG00000015287)	PPIP5K1 (ENSSGRG00000015300)	mtfmt (ENSSGRG00000017308)	ENSSGRG00000017314	tcf12 (ENSSGRG00000017323) #22	CGNL1 (ENSSGRG00000017594) #24	MYZAP (ENSSGRG00000017598) #25	ENSSGRG00000017600	gnrhr2 (ENSSGRG00000017604)	SLCO3A1 (ENSSGRG00000017606)
Goldfish	MODERN SPECIES	25	mfap1 (ENSCARG00000016296)	hypk (ENSCARG00000016329)	SERINC4 (ENSCARG00000016346)	ENSCARG00000016354	ENSCARG00000016378	iqgap1 (ENSCARG00000016802)	cartl (ENSCARG00000034652)	CART (ENSCARG00000034661)	cdkn2aip (ENSCARG00000034677)	tubgcp4 (ENSCARG00000034699)	tp53bp1 (ENSCARG00000034962)	ENSCARG00000035013	MAP1A (ENSCARG00000035025)	PPIP5K1 (ENSCARG00000035133)	ENSCARG00000035350	tcf12 (ENSCARG00000035412) #22	CGNL1 (ENSCARG00000035688) #24	MYZAP (ENSCARG00000036008) #25	ENSCARG00000036075	SLCO3A1 (ENSCARG00000036124)	katnb1 (ENSCARG00000036235)	tmem208 (ENSCARG00000036285)	si:dkey-286h2.3 (ENSCARG00000036297)	si:ch211-122f10.4 (ENSCARG00000036314)	slc38a7 (ENSCARG00000036393)	got2b (ENSCARG00000036480)	ENSCARG00000005831	bmp15 (ENSCARG00000005845)	leap2 (ENSCARG00000005864)	PHKA1 (ENSCARG00000005978)	hdac8 (ENSCARG00000006419)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Acanthomorphata	ANCESTRAL SPECIES	18	ENSGT00940000155112.A.d	ENSGT00940000156672.o.b	ENSGT00940000153717.b.h	ENSGT00940000158111	ENSGT00940000156218 #8	ENSGT00940000178971	ENSGT00950000183090.A #10	ENSGT00940000166643	ENSGT00940000155943.a #15	ENSGT00940000158905 #16	ENSGT01050000244970.b.i #18	ENSGT00940000176052	ENSGT00390000018333 #19	ENSGT00730000111210 #20	ENSGT00940000163854.b	ENSGT00940000155047.bc #22	ENSGT00940000155047.ac.a #22	ENSGT00940000154489.A.c #24	ENSGT00950000183065.A #25	ENSGT00950000183065.D ##25	ENSGT00940000158898 #26	ENSGT00940000164919.b	ENSGT00940000157602 #29	ENSGT00940000164516.a	ENSGT00390000016607.a #31	ENSGT00940000156573 #32	ENSGT00940000157691 #33	ENSGT00940000157461 #35	ENSGT00940000156900	ENSGT00390000005939.b	ENSGT00940000159421
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Pinecone sodierfish	MODERN SPECIES	20	slc5a12 (ENSMMDG00005018194)	FIBIN (ENSMMDG00005018189)	ENSMMDG00005018182	SPI1 (ENSMMDG00005018166)	prc1a (ENSMMDG00005018158)	ENSMMDG00005018149	CLPX (ENSMMDG00005018071)	ENSMMDG00005018066	CYP19A1 (ENSMMDG00005017955)	AP4E1 (ENSMMDG00005017932)	MYO5C (ENSMMDG00005017780)	ENSMMDG00005005565	rsl24d1 (ENSMMDG00005005370) #7	ENSMMDG00005005353 ##15	RFX7 (ENSMMDG00005005342) #18	ENSMMDG00005005331 #22	ENSMMDG00005005324 #24	ENSMMDG00005005313	ENSMMDG00005003415	fan1 (ENSMMDG00005002443)	ENSMMDG00005002416	DUOXA2 (ENSMMDG00005002411)	ENSMMDG00005002401	TJP1 (ENSMMDG00005002176)	ENSMMDG00005001652	ENSMMDG00005001480	ENSMMDG00005001453	galk2 (ENSMMDG00005001401)	ENSMMDG00005001385	ATP8B4 (ENSMMDG00005001376)	sqor (ENSMMDG00005001347)
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Barramundi perch	MODERN SPECIES	1338																ENSLCAG00010015457 #22	ENSLCAG00010015453 #24	ENSLCAG00010015450
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Bicolor damselfish	MODERN SPECIES	1077																ENSSPAG00000002279 #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Spiny chromis	MODERN SPECIES	579																ENSAPOG00000005940 #22	ENSAPOG00000005928	DHRS11 (ENSAPOG00000005832)
Atherinomorphae	ANCESTRAL SPECIES	28	ENSGT00940000156081.j	ENSGT00940000155212.bb	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000154827	ENSGT00940000156423.j	ENSGT00390000010767	ENSGT00940000155301.f	ENSGT01030000234535.E.d	ENSGT00950000183103.d.a.b	ENSGT00390000016258	ENSGT01030000234618.E	ENSGT00940000156170	ENSGT00940000158002	ENSGT01090000259997.a.d.b.a.a.a.a	ENSGT00940000155047.bc #22	ENSGT00940000159129	ENSGT00940000167600	ENSGT00940000157449.a	ENSGT00390000000360	ENSGT00960000186749	ENSGT00940000161555	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460.j	ENSGT00390000002216	ENSGT00400000024390	ENSGT01050000245201	ENSGT00940000154484.B.a.a	ENSGT00950000182909.a.e	ENSGT00940000153725.b.c
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	1311	ghrb (ENSOSIG00000016509)	c7b (ENSOSIG00000016465)	c6 (ENSOSIG00000015854)	rnf180b (ENSOSIG00000015839)	htr1ab (ENSOSIG00000015838)	spp1 (ENSOSIG00000015836)	ENSOSIG00000015834	vldlr (ENSOSIG00000003097)	KCNV2 (ENSOSIG00000002669)	pum3 (ENSOSIG00000001270)	ENSOSIG00000017764	BRCC3 (ENSOSIG00000017761)	RAB27B (ENSOSIG00000017757)	txnl1 (ENSOSIG00000017754)	ATP8B1 (ENSOSIG00000017624)	ENSOSIG00000017581 #22	ENSOSIG00000017578	ENSOSIG00000017575	NARS1 (ENSOSIG00000014862)	fech (ENSOSIG00000014838)
Chinese medaka	MODERN SPECIES	2560																ENSOSIG00000001842 #22
Cyprinodontiformes	ANCESTRAL SPECIES	27	ENSGT00940000156081.j	ENSGT00940000155212.bb	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000154827	ENSGT00940000156423.j	ENSGT00390000010767	ENSGT00940000155301.f	ENSGT01030000234535.E.d	ENSGT00950000183103.d.a.b	ENSGT00390000016258	ENSGT01030000234618.E	ENSGT00940000156170	ENSGT00940000158002	ENSGT01090000259997.a.d.b.a.a.a.a	ENSGT00940000155047.bc #22	ENSGT00940000159129	ENSGT00940000167600	ENSGT00940000157449.a	ENSGT00390000000360	ENSGT00960000186749	ENSGT00940000161555	ENSGT00390000015757	ENSGT00940000157438.d	ENSGT00940000155460.j	ENSGT00390000002216	ENSGT00400000024390	ENSGT01050000245201	ENSGT01010000222287.B.b.b.b	ENSGT00950000182909.a.e	ENSGT00940000153725.b.c
Aplocheiloidei	ANCESTRAL SPECIES	176			ENSGT00940000156081.j	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000154827	ENSGT00940000156423.j	ENSGT00390000010767	ENSGT00940000155301.f	ENSGT01030000234535.E.d	ENSGT00950000183103.d.a.b	ENSGT00390000016258	ENSGT01030000234618.E	ENSGT00940000156170	ENSGT00940000158002	ENSGT00940000155047.bc #22	ENSGT00940000159129
Mangrove rivulus	MODERN SPECIES	186	pip5k1ba (ENSKMAG00000007695)	EFNA5 (ENSKMAG00000007659)	ENSKMAG00000007641	ENSKMAG00000007592	ENSKMAG00000007562	ccni (ENSKMAG00000007540)	ccng2 (ENSKMAG00000007519)	ENSKMAG00000007498	WDR7 (ENSKMAG00000007389)	st8sia3 (ENSKMAG00000007344)	ONECUT2 (ENSKMAG00000007330)	fech (ENSKMAG00000007309)	NARS1 (ENSKMAG00000007257)	txnl1 (ENSKMAG00000007234)	ATP8B1 (ENSKMAG00000007068)	ENSKMAG00000007026 #22	ENSKMAG00000007011
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Sailfin molly	MODERN SPECIES	1610														ATP8B1 (ENSPLAG00000016053)	ENSPLAG00000016041	ENSPLAG00000016016 #22
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1111				ENSCVAG00000009692	nudt21 (ENSCVAG00000009683)	CTCF (ENSCVAG00000009650)	vrk3 (ENSCVAG00000009582)	rab27a (ENSCVAG00000009557) #8	pigb (ENSCVAG00000009531) #10	ENSCVAG00000009276	PRTG (ENSCVAG00000009237) #15	nedd4a (ENSCVAG00000000773) #16	ENSCVAG00000009150 #18	ENSCVAG00000009102	ENSCVAG00000009089	ENSCVAG00000009071 #22
Sheepshead minnow	MODERN SPECIES	1338																ENSCVAG00000014624 #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Huchen	MODERN SPECIES	9279																ENSHHUG00000037747 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Salmo	ANCESTRAL SPECIES		ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00630000089884.A.b	ENSGT00940000175255	ENSGT00940000157778.q.a	ENSGT00950000183003.a.a.a.a.a.c	ENSGT00940000154827.eb	ENSGT00940000156423.j.d	ENSGT00940000158002.i	ENSGT00940000155301.d	ENSGT01030000234535.E.d.c.a	ENSGT00950000183103.d.a.b	ENSGT00390000016258	ENSGT01030000234618.E.f.a.a	ENSGT00940000156170.m	ENSGT00940000155047.bc #22	ENSGT00940000167600.c	ENSGT00940000157449.a.b	ENSGT00390000001566.e	ENSGT00950000183005.a.b.e.b	ENSGT00940000158867.c	ENSGT00940000165000.b.b	ENSGT01100000264204	ENSGT00940000165922.d	ENSGT00940000159383	ENSGT01050000244898.a.a.a.a.l.d	ENSGT00940000158840.o.a	ENSGT00940000172372.a	ENSGT00940000172372.b	ENSGT00940000157979.m.a.a	ENSGT00390000014471
River trout	MODERN SPECIES	15	angptl2a (ENSSTUG00000029475)	rnf213a (ENSSTUG00000029497)	ENSSTUG00000030259	SHROOM3 (ENSSTUG00000030266)	ENSSTUG00000030302	ccni (ENSSTUG00000030319)	ccng2 (ENSSTUG00000012992)	ATP8B1 (ENSSTUG00000013073)	WDR7 (ENSSTUG00000014508)	ENSSTUG00000014708	st8sia3 (ENSSTUG00000014715)	ONECUT2 (ENSSTUG00000014737)	fech (ENSSTUG00000014750)	NARS1 (ENSSTUG00000014825)	txnl1 (ENSSTUG00000015350)	ENSSTUG00000015368 #22	ENSSTUG00000015377	ENSSTUG00000015380	RAB27B (ENSSTUG00000015387)	ENSSTUG00000015412	mbd2 (ENSSTUG00000015441)	dcc (ENSSTUG00000015492)	trabd2a (ENSSTUG00000016196)	HOOK3 (ENSSTUG00000016248)	ENSSTUG00000016999	ENSSTUG00000017008	ENSSTUG00000017017	ENSSTUG00000017051	ENSSTUG00000017057	ENSSTUG00000017062	rnf170 (ENSSTUG00000017067)
Atlantic salmon	MODERN SPECIES	2	gnao1b (ENSSSAG00000104503)	ENSSSAG00000010261	RAB27A (ENSSSAG00000088876) #8	ENSSSAG00000085062	ENSSSAG00000083952	ccpg1 (ENSSSAG00000010184)	ENSSSAG00000121142	dyx1c1 (ENSSSAG00000010159) #12	PYGO1 (ENSSSAG00000081320) #14	PRTG (ENSSSAG00000010107) #15	NEDD4 (ENSSSAG00000005199) #16	RFX7 (ENSSSAG00000109816) #18	TEX9 (ENSSSAG00000004947) #19	MNS1 (ENSSSAG00000004875) #20	ENSSSAG00000004838	ENSSSAG00000004823 #22	ENSSSAG00000004152 #22	ENSSSAG00000098345	cgnl1 (ENSSSAG00000004092) #24	MYZAP (ENSSSAG00000080951) #25	polr2m (ENSSSAG00000004050) ##25	aldh1a2 (ENSSSAG00000004552) #26	aqp9b (ENSSSAG00000094256)	lipca (ENSSSAG00000003952) #29	ENSSSAG00000076061	adam10 (ENSSSAG00000080438)	fam63b (ENSSSAG00000113578) #31	sltm (ENSSSAG00000073300) #32	rnf111 (ENSSSAG00000073003) #33	ccnb2 (ENSSSAG00000072975) #34	MYO1E (ENSSSAG00000079260) #35
Oncorhynchus	ANCESTRAL SPECIES	47	ENSGT00390000010355	ENSGT00940000164588.f.b	ENSGT00940000153372.A.e.a.b.b.a	ENSGT01030000235124	ENSGT00940000153372.A.e.a.a.d	ENSGT00390000007731.a	ENSGT00940000157778.r	ENSGT00940000157778.q.b	ENSGT00950000183003.a.a.a.a.a.d	ENSGT00940000154827.db	ENSGT00940000156423.j.c	ENSGT00390000010767	ENSGT00940000158002.j	ENSGT01030000234618.E.f.a.b.a	ENSGT00940000156170.m.b	ENSGT00940000155047.bc #22	ENSGT00940000159129.u.a	ENSGT00940000167600.d	ENSGT00940000157449.a.a	ENSGT00390000001566.f	ENSGT00390000008823	ENSGT00940000158867.d	ENSGT00940000165000.b.a	ENSGT00940000158075.w.a	ENSGT00390000017123.b.a.b	ENSGT00940000165922.c	ENSGT01050000244898.a.a.a.a.l.b	ENSGT00940000161621.A.a.b.a	ENSGT00940000158840.o.b	ENSGT01000000221924	ENSGT00390000007109.o
Rainbow trout	MODERN SPECIES	3									galt (ENSOMYG00000005968)	sigmar1 (ENSOMYG00000005828)	katnal2 (ENSOMYG00000065578)	hdhd2 (ENSOMYG00000005779)	skor2 (ENSOMYG00000059761)	ENSOMYG00000009895	ENSOMYG00000009881	ENSOMYG00000076084 #22	ENSOMYG00000070940	ENSOMYG00000056532	ENSOMYG00000009943	ENSOMYG00000009995	ENSOMYG00000068004	ENSOMYG00000048046	ENSOMYG00000071656	ENSOMYG00000057588	ENSOMYG00000005485	ENSOMYG00000005513	ENSOMYG00000027190	ENSOMYG00000058625	ENSOMYG00000005610	ENSOMYG00000064993	ENSOMYG00000052622
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155047.bc #22
Chinook salmon	MODERN SPECIES	28	RHCG (ENSOTSG00005015207)	fes (ENSOTSG00005014039)	furina (ENSOTSG00005013253)	ENSOTSG00005013249	rsl24d1 (ENSOTSG00005013247) #7	rab27a (ENSOTSG00005013245) #8	pigb (ENSOTSG00005013240) #10	ENSOTSG00005013239	pygo1 (ENSOTSG00005013238) #14	PRTG (ENSOTSG00005013203) #15	nedd4a (ENSOTSG00005012829) #16	RFX7 (ENSOTSG00005012828) #18	tex9 (ENSOTSG00005012827) #19	mns1 (ENSOTSG00005012823) #20	ENSOTSG00005012822	ENSOTSG00005012821 #22	ENSOTSG00005012820	ENSOTSG00005012819	ENSOTSG00005012817	ENSOTSG00005012806	E2F4 (ENSOTSG00005012804)	si:ch211-122f10.4 (ENSOTSG00005012794)	slc38a7 (ENSOTSG00005012792)	got2b (ENSOTSG00005012419)	ENSOTSG00005012416	ENSOTSG00005012414	nrn1lb (ENSOTSG00005012412)	thap11 (ENSOTSG00005012411)	gfod2 (ENSOTSG00005012409)	ENSOTSG00005012408	ENSOTSG00005012407
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1490	lrrc28 (ENSCMIG00000002897)	ENSCMIG00000002875	pdia3 (ENSCMIG00000002440)	UNC13C (ENSCMIG00000001613)	rsl24d1 (ENSCMIG00000001339) #7	rab27a (ENSCMIG00000001330) #8	CCPG1 (ENSCMIG00000001291) #9	ENSCMIG00000001268	dnaaf4 (ENSCMIG00000001254) #12	PRTG (ENSCMIG00000001220) #15	nedd4a (ENSCMIG00000000623) #16	RFX7 (ENSCMIG00000000284) #18	tex9 (ENSCMIG00000000268) #19	mns1 (ENSCMIG00000000250) #20	ENSCMIG00000000226	tcf12 (ENSCMIG00000020065) #22	CGNL1 (ENSCMIG00000020063) #24	ENSCMIG00000020061 #25	ENSCMIG00000020060 ##25	aldh1a2 (ENSCMIG00000020000) #26	AQP9 (ENSCMIG00000019970) #28	lipca (ENSCMIG00000019965) #29	adam10a (ENSCMIG00000019962)	MINDY2 (ENSCMIG00000019961) #31	sltm (ENSCMIG00000019960) #32	rnf111 (ENSCMIG00000019959) #33	ccnb2 (ENSCMIG00000019958) #34	MYO1E (ENSCMIG00000019954) #35	ENSCMIG00000019944	ENSCMIG00000019943	ENSCMIG00000019941
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1454																ENSCMIG00000000552 #22
Elephant shark	MODERN SPECIES	618																ENSCMIG00000002385 #22
Cyclostomata	ANCESTRAL SPECIES	1225															ENSGT01050000245095	ENSGT00940000155047 #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	944																ENSEBUG00000004459 #22	ENSEBUG00000012834	ENSEBUG00000007988
Hagfish	MODERN SPECIES	777								ENSEBUG00000007416	ENSEBUG00000006656	ENSEBUG00000006508	smad10a (ENSEBUG00000014431)	CHTOP (ENSEBUG00000000416)	vps72a (ENSEBUG00000012990)	ENSEBUG00000012849	ENSEBUG00000011099 #22	ENSEBUG00000016925 #22
Hagfish	MODERN SPECIES	777									ENSEBUG00000007416	ENSEBUG00000006656	ENSEBUG00000006508	smad10a (ENSEBUG00000014431)	CHTOP (ENSEBUG00000000416)	vps72a (ENSEBUG00000012990)	ENSEBUG00000012849	ENSEBUG00000011099 #22	ENSEBUG00000016925 #22
Hagfish	MODERN SPECIES	526																ENSEBUG00000002369 #22	clk2a (ENSEBUG00000006397)
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	106												phlda2 (ENSPMAG00000001033)	NAP1L4 (ENSPMAG00000000985)	KCNJ3 (ENSPMAG00000000984)	ENSPMAG00000000982	ENSPMAG00000000979 #22	TAMALIN (ENSPMAG00000000968)	ENSPMAG00000000962	ENSPMAG00000000958 #22	gpd2 (ENSPMAG00000000939)	glra2 (ENSPMAG00000000926)	ENSPMAG00000000920
Lamprey	MODERN SPECIES	106									phlda2 (ENSPMAG00000001033)	NAP1L4 (ENSPMAG00000000985)	KCNJ3 (ENSPMAG00000000984)	ENSPMAG00000000982	ENSPMAG00000000979 #22	TAMALIN (ENSPMAG00000000968)	ENSPMAG00000000962	ENSPMAG00000000958 #22	gpd2 (ENSPMAG00000000939)	glra2 (ENSPMAG00000000926)	ENSPMAG00000000920