Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000165746 #9 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000163905 ENSGT00940000161842.a #15 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000170498 #18 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Glires ANCESTRAL SPECIES ENSGT00940000165746 #9 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000163905 ENSGT00940000161842.a #15 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000170498 #18 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Rodentia ANCESTRAL SPECIES ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000163905 ENSGT00940000161842.a #15 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000170498 #18 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Rodentia_A ANCESTRAL SPECIES ENSGT00940000164168 ENSGT01050000246051 ENSGT01020000230889 #10 ENSGT00780000122937 #11 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000170498 #18 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000154489.B ENSGT00940000162698 Sciuridae ANCESTRAL SPECIES ENSGT01050000246051 ENSGT01020000230889 #10 ENSGT00780000122937 #11 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000163905 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000170498.a #18 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000154489.B ENSGT00940000162698 Marmotini ANCESTRAL SPECIES 33 ENSGT00940000161276.C ENSGT00940000161986 ENSGT00940000161896 ENSGT00940000163629 ENSGT00910000144375 ENSGT00910000144329 ENSGT00940000162189 ENSGT00940000161606 ENSGT00940000162349 ENSGT00940000162657 ENSGT00940000163019.a ENSGT00940000162465 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Alpin marmot MODERN SPECIES 85 ENSMMMG00000018184 #7 ENSMMMG00000018192 #8 ENSMMMG00000018196 #9 ENSMMMG00000018197 #10 LCE7A (ENSMMMG00000018216) #11 C1orf68 (ENSMMMG00000018221) #12 ENSMMMG00000018223 #13 ENSMMMG00000018241 #14 LCE5A (ENSMMMG00000018245) #15 ENSMMMG00000018247 #16 ENSMMMG00000018264 #17 ENSMMMG00000018274 #18 ENSMMMG00000018282 #19 ENSMMMG00000018292 #20 RPTN (ENSMMMG00000018298) #21 S100A11 (ENSMMMG00000018305) #22 S100A10 (ENSMMMG00000018313) #23 THEM4 (ENSMMMG00000018374) #24 THEM5 (ENSMMMG00000018379) #25 RORC (ENSMMMG00000018387) #26 LINGO4 (ENSMMMG00000018432) #27 TDRKH (ENSMMMG00000018437) #28 OAZ3 (ENSMMMG00000018483) #29 ENSMMMG00000018501 #30 CELF3 (ENSMMMG00000018558) #31 SNX27 (ENSMMMG00000018570) #32 TUFT1 (ENSMMMG00000018579) #33 ENSMMMG00000018638 #34 POGZ (ENSMMMG00000018654) #35 PSMB4 (ENSMMMG00000018764) #36 SELENBP1 (ENSMMMG00000018768) #37 Marmotini_b ANCESTRAL SPECIES 77 ENSGT00940000162465 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Arctic ground squirrel MODERN SPECIES 298 CRNN (ENSUPAG00010004975) ENSUPAG00010004964 ##21 ENSUPAG00010004956 #20 S100A11 (ENSUPAG00010004949) #22 ENSUPAG00010004940 THEM4 (ENSUPAG00010004934) #24 THEM5 (ENSUPAG00010004930) #25 C2CD4D (ENSUPAG00010004925) RORC (ENSUPAG00010004882) #26 LINGO4 (ENSUPAG00010004877) #27 TDRKH (ENSUPAG00010004818) #28 OAZ3 (ENSUPAG00010004801) #29 MRPL9 (ENSUPAG00010004792) #30 RIIAD1 (ENSUPAG00010004783) CELF3 (ENSUPAG00010004738) #31 SNX27 (ENSUPAG00010004681) #32 TUFT1 (ENSUPAG00010004591) #33 ENSUPAG00010004578 #34 POGZ (ENSUPAG00010004470) #35 Squirrel MODERN SPECIES 141 ABCA5 (ENSSTOG00000020837) ABCA6 (ENSSTOG00000013286) ABCA9 (ENSSTOG00000010793) FAM20A (ENSSTOG00000028525) PRKAR1A (ENSSTOG00000012903) WIPI1 (ENSSTOG00000003127) ARSG (ENSSTOG00000003119) SLC16A6 (ENSSTOG00000027530) AMZ2 (ENSSTOG00000021098) ENSSTOG00000023386 #22 GNA13 (ENSSTOG00000001770) RGS9 (ENSSTOG00000023798) AXIN2 (ENSSTOG00000024957) CEP112 (ENSSTOG00000007220) APOH (ENSSTOG00000026343) PRKCA (ENSSTOG00000003118) CACNG5 (ENSSTOG00000006149) CACNG4 (ENSSTOG00000009282) CACNG1 (ENSSTOG00000007809) HELZ (ENSSTOG00000007818) PSMD12 (ENSSTOG00000003673) PITPNC1 (ENSSTOG00000003688) NOL11 (ENSSTOG00000003704) BPTF (ENSSTOG00000013363) ENSSTOG00000027925 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES ENSSVLG00005009378 ENSSVLG00005009364 ENSSVLG00005009341 ENSSVLG00005009331 ENSSVLG00005009194 ENSSVLG00005003674 ENSSVLG00005003667 CRNN (ENSSVLG00005003616) ENSSVLG00005003594 #17 ENSSVLG00005003582 ENSSVLG00005003567 #18 ENSSVLG00005003502 ##18 HRNR (ENSSVLG00005003432) #20 ENSSVLG00005003410 #21 ENSSVLG00005003377 ENSSVLG00005003358 #22 ENSSVLG00005003347 #22 S100A10 (ENSSVLG00005003336) #23 THEM4 (ENSSVLG00005003315) #24 THEM5 (ENSSVLG00005003303) #25 C2CD4D (ENSSVLG00005003299) RORC (ENSSVLG00005003240) #26 LINGO4 (ENSSVLG00005003205) #27 TDRKH (ENSSVLG00005003148) #28 OAZ3 (ENSSVLG00005003077) #29 ENSSVLG00005003027 #30 RIIAD1 (ENSSVLG00005002999) CELF3 (ENSSVLG00005002946) #31 SNX27 (ENSSVLG00005002849) #32 TUFT1 (ENSSVLG00005002739) #33 CGN (ENSSVLG00005002674) Eurasian red squirrel MODERN SPECIES ENSSVLG00005009364 ENSSVLG00005009341 ENSSVLG00005009331 ENSSVLG00005009194 ENSSVLG00005003674 ENSSVLG00005003667 CRNN (ENSSVLG00005003616) ENSSVLG00005003594 #17 ENSSVLG00005003582 ENSSVLG00005003567 #18 ENSSVLG00005003502 ##18 HRNR (ENSSVLG00005003432) #20 ENSSVLG00005003410 #21 ENSSVLG00005003377 ENSSVLG00005003358 #22 ENSSVLG00005003347 #22 S100A10 (ENSSVLG00005003336) #23 THEM4 (ENSSVLG00005003315) #24 THEM5 (ENSSVLG00005003303) #25 C2CD4D (ENSSVLG00005003299) RORC (ENSSVLG00005003240) #26 LINGO4 (ENSSVLG00005003205) #27 TDRKH (ENSSVLG00005003148) #28 OAZ3 (ENSSVLG00005003077) #29 ENSSVLG00005003027 #30 RIIAD1 (ENSSVLG00005002999) CELF3 (ENSSVLG00005002946) #31 SNX27 (ENSSVLG00005002849) #32 TUFT1 (ENSSVLG00005002739) #33 CGN (ENSSVLG00005002674) POGZ (ENSSVLG00005002594) #35 Hystricomorpha ANCESTRAL SPECIES 131 ENSGT00940000154172 #22 ENSGT00940000154197.a.a.c.a ##23 Hystricomorpha_a ANCESTRAL SPECIES 59 ENSGT00940000161606 ENSGT00940000162349 ENSGT00940000162657 ENSGT00700000104637 ENSGT00730000111592 ENSGT00940000163248.h.a #8 ENSGT00940000165746 #9 ENSGT00730000111554 ENSGT00940000161842.a #15 ENSGT00940000169512 ENSGT00730000111580 #12 ENSGT00940000161842.b ##15 ENSGT00940000163498 ENSGT00940000162465 ENSGT00940000154467.a #21 ENSGT00940000154172 #22 ENSGT00940000154197.a.a.c.a ##23 ENSGT00940000154197.a.a.d ##23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000154489.B Hystricomorpha_b ANCESTRAL SPECIES 79 ENSGT00940000162465 ENSGT00940000154467.a #21 ENSGT00940000154172 #22 ENSGT00940000154197.a.a.c.a.b.b ##23 ENSGT00940000154197.a.a.c.a.a ##23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000154489.B Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 116 TTC39C (ENSODEG00000005358) ENSODEG00000019156 ENSODEG00000004432 ENSODEG00000004783 ENSODEG00000004896 NPC1 (ENSODEG00000005163) RMC1 (ENSODEG00000006450) RIOK3 (ENSODEG00000006444) TMEM241 (ENSODEG00000005697) CABLES1 (ENSODEG00000004628) ENSODEG00000005244 GATA6 (ENSODEG00000004956) MIB1 (ENSODEG00000005087) ABHD3 (ENSODEG00000005394) SNRPD1 (ENSODEG00000005764) ENSODEG00000019279 #22 ENSODEG00000004902 GREB1L (ENSODEG00000006122) ROCK1 (ENSODEG00000006532) ENSODEG00000005831 THOC1 (ENSODEG00000006623) ENSODEG00000019254 COLEC12 (ENSODEG00000007701) CETN1 (ENSODEG00000019340) ENSODEG00000006402 ENOSF1 (ENSODEG00000005113) YES1 (ENSODEG00000005726) ADCYAP1 (ENSODEG00000007089) ENSODEG00000007303 ENSODEG00000019310 METTL4 (ENSODEG00000006068) Degu MODERN SPECIES 89 PGLYRP4 (ENSODEG00000010627) PGLYRP3 (ENSODEG00000009237) ENSODEG00000008993 ENSODEG00000019689 ENSODEG00000019719 ENSODEG00000012331 #8 ENSODEG00000019776 #9 KPRP (ENSODEG00000009720) ENSODEG00000019631 C1orf68 (ENSODEG00000009558) #12 ENSODEG00000019920 ENSODEG00000010353 ENSODEG00000009304 ENSODEG00000009112 ENSODEG00000019709 ENSODEG00000009608 #22 ENSODEG00000009939 ##23 THEM4 (ENSODEG00000010154) #24 THEM5 (ENSODEG00000009312) #25 C2CD4D (ENSODEG00000010767) ENSODEG00000009680 RORC (ENSODEG00000010665) #26 LINGO4 (ENSODEG00000009935) #27 ENSODEG00000009532 #28 OAZ3 (ENSODEG00000010337) #29 MRPL9 (ENSODEG00000010962) #30 RIIAD1 (ENSODEG00000010181) CELF3 (ENSODEG00000010505) #31 SNX27 (ENSODEG00000011216) #32 ENSODEG00000019964 TUFT1 (ENSODEG00000012013) #33 Degu DUPLICATION Degu MODERN SPECIES 232 ENSODEG00000018731 YTHDC1 (ENSODEG00000001715) TMPRSS11E (ENSODEG00000001785) ENSODEG00000001810 TMPRSS11F (ENSODEG00000001850) ENSODEG00000001889 ENSODEG00000000463 TMPRSS11A (ENSODEG00000000664) TMPRSS11D (ENSODEG00000000684) GNRHR (ENSODEG00000000710) UBA6 (ENSODEG00000000801) STAP1 (ENSODEG00000001048) ENSODEG00000001074 ENSODEG00000001104 #22 ENSODEG00000001143 EPHA5 (ENSODEG00000001548) ENSODEG00000018896 ENSODEG00000003448 Degu MODERN SPECIES 133 ENSODEG00000015161 ENSODEG00000020184 ENSODEG00000020101 LUZP1 (ENSODEG00000014336) KDM1A (ENSODEG00000014755) ENSODEG00000014466 ENSODEG00000014173 LACTBL1 (ENSODEG00000014475) EPHB2 (ENSODEG00000015223) ENSODEG00000020286 C1QB (ENSODEG00000015143) C1QC (ENSODEG00000015249) C1QA (ENSODEG00000016110) EPHA8 (ENSODEG00000014623) ZBTB40 (ENSODEG00000015208) ENSODEG00000016237 #22 ENSODEG00000020316 ENSODEG00000014387 WNT4 (ENSODEG00000014777) CDC42 (ENSODEG00000015760) ENSODEG00000014833 ENSODEG00000014468 ENSODEG00000014629 HSPG2 (ENSODEG00000015394) ENSODEG00000014605 USP48 (ENSODEG00000015315) RAP1GAP (ENSODEG00000015689) ALPL (ENSODEG00000014674) ECE1 (ENSODEG00000016105) ENSODEG00000015534 ENSODEG00000014814 Degu MODERN SPECIES 146 ENSODEG00000007172 TNFAIP8L3 (ENSODEG00000006955) CYP19A1 (ENSODEG00000007934) GLDN (ENSODEG00000010063) ENSODEG00000019746 DMXL2 (ENSODEG00000007956) SCG3 (ENSODEG00000008588) LYSMD2 (ENSODEG00000007006) TMOD2 (ENSODEG00000008645) TMOD3 (ENSODEG00000006720) LEO1 (ENSODEG00000008095) ENSODEG00000007404 GNB5 (ENSODEG00000006055) MYO5C (ENSODEG00000005941) MYO5A (ENSODEG00000008230) ENSODEG00000019439 #22 ENSODEG00000005366 ATOSA (ENSODEG00000007975) ONECUT1 (ENSODEG00000007415) ENSODEG00000006149 ENSODEG00000019275 ENSODEG00000006126 RSL24D1 (ENSODEG00000005430) RAB27A (ENSODEG00000006284) PIGB (ENSODEG00000006748) CCPG1 (ENSODEG00000007737) PIERCE2 (ENSODEG00000007192) DNAAF4 (ENSODEG00000007101) PYGO1 (ENSODEG00000005615) ENSODEG00000007713 PRTG (ENSODEG00000006148) Degu MODERN SPECIES 291 ENSODEG00000001913 ENSODEG00000001956 CD247 (ENSODEG00000002005) CREG1 (ENSODEG00000002026) RCSD1 (ENSODEG00000002064) MPZL1 (ENSODEG00000002143) ENSODEG00000018781 ADCY10 (ENSODEG00000002246) ENSODEG00000001149 DCAF6 (ENSODEG00000001207) GPR161 (ENSODEG00000001359) ENSODEG00000001396 ENSODEG00000001403 SFT2D2 (ENSODEG00000001437) TBX19 (ENSODEG00000001542) ENSODEG00000018697 #22 ENSODEG00000001554 DPT (ENSODEG00000001574) ATP1B1 (ENSODEG00000001596) Long-tailed chinchilla MODERN SPECIES 296 CRNN (ENSCLAG00000000319) ENSCLAG00000000326 #21 S100A11 (ENSCLAG00000000334) #22 ENSCLAG00000000361 ##23 ENSCLAG00000000368 THEM4 (ENSCLAG00000000400) #24 THEM5 (ENSCLAG00000000481) #25 RORC (ENSCLAG00000000624) #26 LINGO4 (ENSCLAG00000000770) #27 TDRKH (ENSCLAG00000001088) #28 ENSCLAG00000000442 #29 MRPL9 (ENSCLAG00000000458) #30 CELF3 (ENSCLAG00000000586) #31 SNX27 (ENSCLAG00000000162) #32 TUFT1 (ENSCLAG00000000570) #33 CGN (ENSCLAG00000000672) POGZ (ENSCLAG00000001558) #35 PSMB4 (ENSCLAG00000001775) #36 Guinea pig MODERN SPECIES 2 ENSCPOG00000033053 ##15 ENSCPOG00000030235 ##15 ENSCPOG00000037041 ENSCPOG00000030043 ##15 ENSCPOG00000030563 ##15 ENSCPOG00000033173 ##15 ENSCPOG00000032596 ##15 ENSCPOG00000035955 #14 ENSCPOG00000030264 ENSCPOG00000040656 ENSCPOG00000032513 ENSCPOG00000039783 ENSCPOG00000034456 ENSCPOG00000027424 ENSCPOG00000021328 #20 S100A11 (ENSCPOG00000009745) #22 ENSCPOG00000033136 ##23 THEM4 (ENSCPOG00000000143) #24 THEM5 (ENSCPOG00000001050) #25 C2CD4D (ENSCPOG00000031360) RORC (ENSCPOG00000023600) #26 LINGO4 (ENSCPOG00000003563) #27 TDRKH (ENSCPOG00000003556) #28 OAZ3 (ENSCPOG00000003550) #29 MRPL9 (ENSCPOG00000021168) #30 CELF3 (ENSCPOG00000003539) #31 SNX27 (ENSCPOG00000007869) #32 TUFT1 (ENSCPOG00000007866) #33 CGN (ENSCPOG00000023121) POGZ (ENSCPOG00000015210) #35 PSMB4 (ENSCPOG00000015209) #36 Naked mole-rat female MODERN SPECIES 10 SELENBP1 (ENSHGLG00000017449) #37 PSMB4 (ENSHGLG00000011939) #36 POGZ (ENSHGLG00000008750) #35 ENSHGLG00000011542 TUFT1 (ENSHGLG00000014891) #33 SNX27 (ENSHGLG00000004841) #32 ENSHGLG00000006045 #31 ENSHGLG00000041725 #31 RIIAD1 (ENSHGLG00000009105) MRPL9 (ENSHGLG00000044925) #30 OAZ3 (ENSHGLG00000048260) #29 TDRKH (ENSHGLG00000007478) #28 LINGO4 (ENSHGLG00000044939) #27 RORC (ENSHGLG00000012884) #26 ENSHGLG00000011973 #25 ENSHGLG00000013312 #22 ENSHGLG00000040771 ##23 ENSHGLG00000015316 #24 ENSHGLG00000034971 ENSHGLG00000045102 ENSHGLG00000037105 ENSHGLG00000015383 #21 ENSHGLG00000042729 #20 ENSHGLG00000040052 #18 ENSHGLG00000035954 ENSHGLG00000048818 #17 ENSHGLG00000038619 ENSHGLG00000042654 #14 ENSHGLG00000041296 #14 ENSHGLG00000045394 #14 ENSHGLG00000050625 #14 Rodentia_B ANCESTRAL SPECIES ENSGT00940000161606 ENSGT00940000162349 ENSGT00940000162657 ENSGT00700000104637 ENSGT00730000111592 ENSGT00730000111554 ENSGT00940000161842.a #15 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Kangaroo rat MODERN SPECIES 345 Pglyrp3 (ENSDORG00000003424) ENSDORG00000028790 ENSDORG00000027976 ENSDORG00000026601 ENSDORG00000029886 ENSDORG00000029857 ENSDORG00000024714 ENSDORG00000025777 ENSDORG00000011451 #15 Kprp (ENSDORG00000026948) ENSDORG00000023568 ENSDORG00000026274 ENSDORG00000003644 ENSDORG00000025569 #15 Crnn (ENSDORG00000002349) S100a11 (ENSDORG00000027002) #22 ENSDORG00000026060 #23 Them4 (ENSDORG00000015331) #24 Them5 (ENSDORG00000015328) #25 Rorc (ENSDORG00000015326) #26 Lingo4 (ENSDORG00000027587) #27 Tdrkh (ENSDORG00000015322) #28 Oaz3 (ENSDORG00000015321) #29 Mrpl9 (ENSDORG00000015320) #30 Celf3 (ENSDORG00000002488) #31 Snx27 (ENSDORG00000014172) #32 Tuft1 (ENSDORG00000026884) #33 ENSDORG00000007338 Pogz (ENSDORG00000025298) #35 Psmb4 (ENSDORG00000028831) #36 ENSDORG00000015968 #37 Myomorpha ANCESTRAL SPECIES 12 ENSGT00910000144329 ENSGT00940000161606 ENSGT00940000162349 ENSGT00940000162657 ENSGT00700000104637 ENSGT00730000111592 ENSGT00730000111554 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Lesser Egyptian jerboa MODERN SPECIES 141 ENSJJAG00000002635 Pglyrp4 (ENSJJAG00000009619) Pglyrp3 (ENSJJAG00000019546) ENSJJAG00000005907 ENSJJAG00000009222 #8 ENSJJAG00000005176 #9 ENSJJAG00000007620 ENSJJAG00000022880 ENSJJAG00000014882 Kprp (ENSJJAG00000004578) 2310050C09Rik (ENSJJAG00000016312) #12 ENSJJAG00000010637 ENSJJAG00000023669 ENSJJAG00000003622 ENSJJAG00000017745 S100a11 (ENSJJAG00000016706) #22 S100a10 (ENSJJAG00000015567) #23 Them4 (ENSJJAG00000010836) #24 Rorc (ENSJJAG00000009867) #26 Lingo4 (ENSJJAG00000017052) #27 Tdrkh (ENSJJAG00000000323) #28 Oaz3 (ENSJJAG00000006341) #29 Mrpl9 (ENSJJAG00000018784) #30 Riiad1 (ENSJJAG00000021268) Celf3 (ENSJJAG00000020104) #31 Snx27 (ENSJJAG00000023845) #32 Tuft1 (ENSJJAG00000011616) #33 ENSJJAG00000003080 Pogz (ENSJJAG00000009420) #35 Psmb4 (ENSJJAG00000012721) #36 ENSJJAG00000006656 #37 Muroidea ANCESTRAL SPECIES 6 ENSGT01020000230889 #10 ENSGT00780000122937 #11 ENSGT00940000169512 ENSGT00730000111580 #12 ENSGT00940000163710 #14 ENSGT01010000222956 ENSGT01100000265211 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Muroidea_A ANCESTRAL SPECIES 5 ENSGT00940000161842.a #15 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000163905 ENSGT00940000163710.q.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000154376.b.e.a ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 Cricetidae ANCESTRAL SPECIES 6 ENSGT00730000114093 ENSGT00780000122937 #11 ENSGT00940000167222 ENSGT01050000245068.A ENSGT00940000161842.a.c #15 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000163905 ENSGT01100000265211 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000154376.b.e.a ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 Cricetinae ANCESTRAL SPECIES 13 ENSGT00940000167222 ENSGT01050000245068.A ENSGT01070000254540 ENSGT01050000245068.B ENSGT00940000161842.a.c #15 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000163905 ENSGT01100000266463 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 Golden Hamster MODERN SPECIES 714 ENSMAUG00000009481 ENSMAUG00000008992 ENSMAUG00000014317 ENSMAUG00000021993 ENSMAUG00000018162 ENSMAUG00000018011 Kprp (ENSMAUG00000009358) ENSMAUG00000009030 2310050C09Rik (ENSMAUG00000021982) #12 ENSMAUG00000008983 ENSMAUG00000009303 ENSMAUG00000009142 ENSMAUG00000003498 Crnn (ENSMAUG00000001754) Tchhl1 (ENSMAUG00000017940) S100a11 (ENSMAUG00000019826) #22 ENSMAUG00000021385 #23 Chinese hamster chok1gshd MODERN SPECIES 352 ENSCGRG00001015003 Kprp (ENSCGRG00001011269) ENSCGRG00001013323 #14 ENSCGRG00001011007 #14 ENSCGRG00001011825 ENSCGRG00001011142 ENSCGRG00001011125 ENSCGRG00001010698 ENSCGRG00001010946 Crnn (ENSCGRG00001009912) Flg2 (ENSCGRG00001004341) #17 ENSCGRG00001024443 ##21 ENSCGRG00001013639 #21 ENSCGRG00001017115 Tchhl1 (ENSCGRG00001014681) S100a11 (ENSCGRG00001023641) #22 S100a10 (ENSCGRG00001013243) #23 Cricetidae_B ANCESTRAL SPECIES 3 ENSGT00940000164168 ENSGT00730000114093 ENSGT00780000122937 #11 ENSGT00940000167222 ENSGT00940000161842.a.c #15 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000163905 ENSGT01100000265211 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.a #21 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000154376.b.e.a ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 Prairie vole MODERN SPECIES 93 Msgn1 (ENSMOCG00000003059) Gen1 (ENSMOCG00000000146) Smc6 (ENSMOCG00000009440) Vsnl1 (ENSMOCG00000000359) Rad51ap2 (ENSMOCG00000012235) ENSMOCG00000002918 ENSMOCG00000004702 #22 Cyria (ENSMOCG00000015524) Mycn (ENSMOCG00000012273) Ddx1 (ENSMOCG00000000257) Nbas (ENSMOCG00000009751) Lratd1 (ENSMOCG00000015863) Trib2 (ENSMOCG00000006314) ENSMOCG00000002531 Lpin1 (ENSMOCG00000014921) Ntsr2 (ENSMOCG00000005558) Greb1 (ENSMOCG00000012442) ENSMOCG00000019419 Rock2 (ENSMOCG00000004291) Pqlc3 (ENSMOCG00000020689) 2410004P03Rik (ENSMOCG00000005186) Kcnf1 (ENSMOCG00000002002) Northern American deer mouse MODERN SPECIES 19 ENSPEMG00000030283 ENSPEMG00000002108 Kprp (ENSPEMG00000003567) ENSPEMG00000007888 ENSPEMG00000024567 ENSPEMG00000028390 #14 ENSPEMG00000030519 #14 ENSPEMG00000025047 Crct1 (ENSPEMG00000025851) Lce1m (ENSPEMG00000028998) Crnn (ENSPEMG00000015891) ENSPEMG00000027135 #17 ENSPEMG00000029220 ##21 ENSPEMG00000009460 #21 Tchhl1 (ENSPEMG00000023251) S100a11 (ENSPEMG00000027141) #22 ENSPEMG00000028727 #23 ENSPEMG00000028073 ENSPEMG00000010771 Them4 (ENSPEMG00000017604) #24 Them5 (ENSPEMG00000009567) #25 C2cd4d (ENSPEMG00000029177) Rorc (ENSPEMG00000019266) #26 Lingo4 (ENSPEMG00000002211) #27 Tdrkh (ENSPEMG00000011171) #28 Oaz3 (ENSPEMG00000008922) #29 Mrpl9 (ENSPEMG00000011374) #30 Riiad1 (ENSPEMG00000019003) Celf3 (ENSPEMG00000001184) #31 Snx27 (ENSPEMG00000009710) #32 Tuft1 (ENSPEMG00000014366) #33 Murinae ANCESTRAL SPECIES 5 ENSGT00940000161842.a #15 ENSGT00960000186821 ENSGT00730000111554 ENSGT00730000111580 #12 ENSGT00940000163710.q.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000163983 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000154376.b.e.a.k ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 Rat DUPLICATION Rat DUPLICATION Rat DUPLICATION Rat DUPLICATION Rat MODERN SPECIES 8 ENSRNOG00000063737 Aopep (ENSRNOG00000017505) Fancc (ENSRNOG00000016889) Ptch1 (ENSRNOG00000019354) Ercc6l2 (ENSRNOG00000019175) Hsd17b3 (ENSRNOG00000019096) Slc35d2 (ENSRNOG00000027229) Zfp367 (ENSRNOG00000027234) Habp4 (ENSRNOG00000019027) Cdc14b (ENSRNOG00000018999) Prxl2c (ENSRNOG00000018886) Ctsl (ENSRNOG00000018566) AABR07026797.1 (ENSRNOG00000018554) Cdk20 (ENSRNOG00000017991) Fam240b (ENSRNOG00000050209) AABR07026805.2 (ENSRNOG00000040101) #22 Cntnap3 (ENSRNOG00000027309) Spata31a5 (ENSRNOG00000018202) Spata31d1c (ENSRNOG00000040116) Prss47 (ENSRNOG00000031461) Mfsd14b (ENSRNOG00000018227) Or14p1 (ENSRNOG00000018489) Or9s18 (ENSRNOG00000067756) Rat MODERN SPECIES Tmc5 (ENSRNOG00000036760) ENSRNOG00000068048 Tmc7 (ENSRNOG00000016679) Coq7 (ENSRNOG00000017012) Itpripl2 (ENSRNOG00000069633) Syt17 (ENSRNOG00000017136) Smg1 (ENSRNOG00000047386) Arl6ip1 (ENSRNOG00000017751) Rps15a (ENSRNOG00000018320) Xylt1 (ENSRNOG00000056658) LOC100912427 (ENSRNOG00000030807) Nucb2 (ENSRNOG00000020456) LOC100911093 (ENSRNOG00000020477) Pik3c2a (ENSRNOG00000020479) Rps13 (ENSRNOG00000068955) ENSRNOG00000070857 #22 Plekha7 (ENSRNOG00000024602) C1h11orf58 (ENSRNOG00000053659) Sox6 (ENSRNOG00000020514) Insc (ENSRNOG00000024712) Calca (ENSRNOG00000011130) Cyp2r1 (ENSRNOG00000011367) LOC102548890 (ENSRNOG00000062071) Pde3b (ENSRNOG00000011417) LOC691427 (ENSRNOG00000066701) Psma1 (ENSRNOG00000011745) Copb1 (ENSRNOG00000057623) AABR07005506.1 (ENSRNOG00000025122) Rras2 (ENSRNOG00000012258) Spon1 (ENSRNOG00000058003) Far1 (ENSRNOG00000013176) Rat MODERN SPECIES 11 LOC100911982 (ENSRNOG00000070776) #14 LOC120100589 (ENSRNOG00000064953) #14 Lce3fl1 (ENSRNOG00000063005) #14 Crct1 (ENSRNOG00000009574) Lce1m (ENSRNOG00000009581) ENSRNOG00000065518 Crnn (ENSRNOG00000008721) ENSRNOG00000064129 #17 ENSRNOG00000069536 #21 ENSRNOG00000064486 #20 Rptn (ENSRNOG00000018679) #21 Tchh (ENSRNOG00000069082) #21 Tchh (ENSRNOG00000056746) Tchhl1 (ENSRNOG00000009610) ENSRNOG00000065314 S100a11 (ENSRNOG00000010105) #22 S100a10 (ENSRNOG00000023226) #23 Tdpoz1-ps4 (ENSRNOG00000066364) RGD1566337 (ENSRNOG00000063844) LOC100911679 (ENSRNOG00000063988) RGD1564313 (ENSRNOG00000064397) Tdpoz2l1 (ENSRNOG00000062928) AABR07012426.1 (ENSRNOG00000050263) LOC120100595 (ENSRNOG00000065808) Tdpoz1-ps13 (ENSRNOG00000063069) Tdpoz1-ps14 (ENSRNOG00000063985) LOC120101040 (ENSRNOG00000070497) LOC120101042 (ENSRNOG00000064402) LOC120101043 (ENSRNOG00000068421) Tdpoz1-ps9 (ENSRNOG00000069915) Tdpoz2 (ENSRNOG00000065162) Rat MODERN SPECIES 3 Orai1 (ENSRNOG00000001336) Morn3 (ENSRNOG00000045574) Tmem120b (ENSRNOG00000048050) Rhof (ENSRNOG00000042607) Setd1b (ENSRNOG00000001337) Hpd (ENSRNOG00000001338) Cfap251 (ENSRNOG00000001342) Bcl7a (ENSRNOG00000056017) Mlxip (ENSRNOG00000001255) Il31 (ENSRNOG00000026192) Lrrc43 (ENSRNOG00000008470) B3gnt4 (ENSRNOG00000071128) Diablo (ENSRNOG00000029197) Vps33a (ENSRNOG00000056889) Clip1 (ENSRNOG00000001247) LOC100359550 (ENSRNOG00000037978) #22 Zcchc8 (ENSRNOG00000001243) Rsrc2 (ENSRNOG00000001238) Kntc1 (ENSRNOG00000033658) Hcar2 (ENSRNOG00000026653) Hcar1 (ENSRNOG00000026661) Denr (ENSRNOG00000001106) Ccdc62 (ENSRNOG00000038002) Hip1r (ENSRNOG00000001091) Vps37b (ENSRNOG00000001086) Abcb9 (ENSRNOG00000001082) Arl6ip4 (ENSRNOG00000001080) Pitpnm2 (ENSRNOG00000029260) Mphosph9 (ENSRNOG00000001074) Mtrfr (ENSRNOG00000001073) Cdk2ap1 (ENSRNOG00000001070) Rat MODERN SPECIES 13 Vsx1 (ENSRNOG00000042220) Acss1 (ENSRNOG00000007102) Apmap (ENSRNOG00000006795) Cst7 (ENSRNOG00000006767) RGD1565143 (ENSRNOG00000055769) LOC103690174 (ENSRNOG00000068068) ENSRNOG00000064151 ENSRNOG00000070867 LOC102549291 (ENSRNOG00000069811) AABR07054262.1 (ENSRNOG00000056526) LOC102554315 (ENSRNOG00000067071) LOC102555033 (ENSRNOG00000067040) Rnaset2-ps1 (ENSRNOG00000005920) LOC102555217 (ENSRNOG00000065630) LOC102555578 (ENSRNOG00000065847) LOC100362296 (ENSRNOG00000065228) #22 LOC100911984 (ENSRNOG00000064299) ENSRNOG00000070080 AABR07027267.1 (ENSRNOG00000060618) Syndig1 (ENSRNOG00000031536) Cst5 (ENSRNOG00000005545) Cyssl1 (ENSRNOG00000036952) AABR07054232.1 (ENSRNOG00000043043) Cyss (ENSRNOG00000030857) LOC689220 (ENSRNOG00000030508) P22k15 (ENSRNOG00000030184) Fth1-ps5 (ENSRNOG00000033100) Andpro (ENSRNOG00000031840) AABR07054186.1 (ENSRNOG00000032769) Cst3 (ENSRNOG00000005195) Cstdc2 (ENSRNOG00000005178) Mus ANCESTRAL SPECIES 7 ENSGT00950000184448 ENSGT00730000111554 ENSGT00950000183531.b ENSGT00730000111580 #12 ENSGT00940000163710.q.a.b.a.a #14 ENSGT00940000163710.q.a.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Mus_A ANCESTRAL SPECIES 9 ENSGT00730000111554 ENSGT00950000183531.b ENSGT00730000111580 #12 ENSGT00940000163710.q.a.b.a.a #14 ENSGT00940000163710.q.a.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000153096.b.d.s.b ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172 #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Mus_B DUPLICATION Mus_B DUPLICATION Mus_B ANCESTRAL SPECIES 8 ENSGT00730000111554 ENSGT00950000183531.b ENSGT00730000111580 #12 ENSGT00940000163710.q.a.b.a.a #14 ENSGT00940000163710.q.a.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.b #17 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000153096.b.d.s.b ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172.kb.a #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Mus_C ANCESTRAL SPECIES 6 ENSGT00960000186821.b ENSGT00950000184448 ENSGT00730000111554 ENSGT00950000183531.b ENSGT00730000111580 #12 ENSGT00940000163710.q.a.a #14 ENSGT01010000222956 ENSGT00860000136028 ENSGT00940000162465 ENSGT00940000154467.b.b.a ##21 ENSGT00940000154467.b.a #20 ENSGT00940000154467.a #21 ENSGT00940000153096.b.d.s.b ENSGT00940000164620 ENSGT00940000162966 ENSGT00940000154172.kb.a #22 ENSGT00940000154197.b.b #23 ENSGT00940000160047 #24 ENSGT00940000161937 #25 ENSGT00940000163537 ENSGT00940000161521 #26 ENSGT00940000162157 #27 ENSGT00940000159364 #28 ENSGT00940000161581 #29 ENSGT00390000008281 #30 ENSGT00390000003062 ENSGT00940000154716 #31 ENSGT00950000183212.C #32 ENSGT00950000183065.B #33 ENSGT00940000162698 ENSGT00940000160649 #35 Steppe mouse DUPLICATION Steppe mouse DUPLICATION Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3372 Zw10 (ENSMSIG00000013094) ENSMSIG00000013079 Usp28 (ENSMSIG00000012895) Htr3b (ENSMSIG00000012863) Htr3a (ENSMSIG00000012846) Zbtb16 (ENSMSIG00000012819) Nnmt (ENSMSIG00000012794) Rbm7 (ENSMSIG00000012760) Rexo2 (ENSMSIG00000012688) ENSMSIG00000012577 Nxpe4 (ENSMSIG00000012534) Nxpe2 (ENSMSIG00000012518) ENSMSIG00000012512 Cadm1 (ENSMSIG00000011500) ENSMSIG00000011463 ENSMSIG00000011446 #22 4931429L15Rik (ENSMSIG00000011321) Bud13 (ENSMSIG00000011279) Zpr1 (ENSMSIG00000011232) Apoa5 (ENSMSIG00000011204) ENSMSIG00000011188 Apoa4 (ENSMSIG00000011179) Apoc3 (ENSMSIG00000011168) ENSMSIG00000011165 Apoa1 (ENSMSIG00000011153) Sik3 (ENSMSIG00000011054) ENSMSIG00000011027 Sidt2 (ENSMSIG00000010816) Tagln (ENSMSIG00000010804) Pcsk7 (ENSMSIG00000010764) Rnf214 (ENSMSIG00000010654) Steppe mouse MODERN SPECIES 36 Or4x6 (ENSMSIG00000027938) Or4b1d (ENSMSIG00000027931) Or4b1 (ENSMSIG00000027927) Or4b13 (ENSMSIG00000027925) ENSMSIG00000027918 #22 Or4b12 (ENSMSIG00000027915) Or4b1b (ENSMSIG00000027914) Or4b1c (ENSMSIG00000027909) Or4x13 (ENSMSIG00000027904) Ptprj (ENSMSIG00000027884) Nup160 (ENSMSIG00000027860) ENSMSIG00000027856 Fnbp4 (ENSMSIG00000027843) Agbl2 (ENSMSIG00000027703) ENSMSIG00000027642 C1qtnf4 (ENSMSIG00000027637) Ndufs3 (ENSMSIG00000027630) Kbtbd4 (ENSMSIG00000027623) ENSMSIG00000027615 Celf1 (ENSMSIG00000027572) Steppe mouse MODERN SPECIES 2268 ENSMSIG00000013333 #20 ENSMSIG00000013325 #21 ENSMSIG00000013304 ENSMSIG00000013297 #21 Tchhl1 (ENSMSIG00000013282) ENSMSIG00000013266 #22 S100a10 (ENSMSIG00000013252) #23 Steppe mouse MODERN SPECIES 2908 Efcab14 (ENSMSIG00000015293) Tex38 (ENSMSIG00000015281) Atpaf1 (ENSMSIG00000015226) Mob3c (ENSMSIG00000015218) ENSMSIG00000015142 Kncn (ENSMSIG00000015125) Tmem275 (ENSMSIG00000015119) Dmbx1 (ENSMSIG00000015099) Faah (ENSMSIG00000015049) ENSMSIG00000015016 ENSMSIG00000015007 ENSMSIG00000015002 #22 ENSMSIG00000014983 Lrrc41 (ENSMSIG00000014928) Rad54l (ENSMSIG00000014901) Lurap1 (ENSMSIG00000014888) Pomgnt1 (ENSMSIG00000014833) Tspan1 (ENSMSIG00000014810) P3r3urf (ENSMSIG00000014803) Pik3r3 (ENSMSIG00000014768) ENSMSIG00000014744 Mast2 (ENSMSIG00000014279) Ipp (ENSMSIG00000014220) Tmem69 (ENSMSIG00000014197) ENSMSIG00000014178 Gpbp1l1 (ENSMSIG00000014139) Nasp (ENSMSIG00000013861) Mouse MODERN SPECIES 12 Lce3b (ENSMUSG00000042031) #14 Lce3c (ENSMUSG00000045475) #14 Lce3d (ENSMUSG00000043472) #14 Lce3e (ENSMUSG00000074433) #14 Lce3f (ENSMUSG00000068885) #14 Crct1 (ENSMUSG00000027913) Lce1m (ENSMUSG00000027912) Tdpoz8 (ENSMUSG00000096879) Crnn (ENSMUSG00000078657) Flg2 (ENSMUSG00000049133) #17 Flg (ENSMUSG00000102439) ##21 Hrnr (ENSMUSG00000041991) #20 Rptn (ENSMUSG00000041984) #21 Tchh (ENSMUSG00000052415) Tchhl1 (ENSMUSG00000027908) S100a11 (ENSMUSG00000027907) #22 S100a10 (ENSMUSG00000041959) #23 Tdpoz2 (ENSMUSG00000103362) Tdpoz1 (ENSMUSG00000094084) Gm5773 (ENSMUSG00000068879) Tdpoz4 (ENSMUSG00000060256) Tdpoz3 (ENSMUSG00000058005) Tdpoz9-ps1 (ENSMUSG00000095822) Tdpoz5 (ENSMUSG00000094163) Tdpoz9 (ENSMUSG00000094328) Tdpoz7 (ENSMUSG00000095251) Spopfm2 (ENSMUSG00000074424) Spopfm3 (ENSMUSG00000090268) Them4 (ENSMUSG00000028145) #24 Them5 (ENSMUSG00000028148) #25 C2cd4d (ENSMUSG00000091648) Mus_B ANCESTRAL SPECIES ENSGT00940000154172.kb.b #22 Mus_C ANCESTRAL SPECIES ENSGT00940000154172.kb.b #22 Steppe mouse MODERN SPECIES 3155 Gm4756 (ENSMSIG00000024922) Dhrs7 (ENSMSIG00000024915) ENSMSIG00000024898 4930447C04Rik (ENSMSIG00000024836) Six6 (ENSMSIG00000024826) ENSMSIG00000024815 Six1 (ENSMSIG00000024807) Six4 (ENSMSIG00000024804) ENSMSIG00000024789 Mnat1 (ENSMSIG00000024773) Trmt5 (ENSMSIG00000024766) Slc38a6 (ENSMSIG00000024679) Tmem30b (ENSMSIG00000024663) Prkch (ENSMSIG00000024638) Hif1a (ENSMSIG00000024611) ENSMSIG00000024606 #22 Snapc1 (ENSMSIG00000024569) Mus_B ANCESTRAL SPECIES ENSGT00940000154172.lb #22 Mus_C ANCESTRAL SPECIES ENSGT00940000154172.lb #22 spretus MODERN SPECIES 12 MGP_SPRETEiJ_G0026228 Lce1k (MGP_SPRETEiJ_G0026229) Kprp (MGP_SPRETEiJ_G0026231) Lce1l (MGP_SPRETEiJ_G0026232) 2310050C09Rik (MGP_SPRETEiJ_G0026233) #12 MGP_SPRETEiJ_G0026234 #14 MGP_SPRETEiJ_G0026235 #14 Crct1 (MGP_SPRETEiJ_G0026236) Lce1m (MGP_SPRETEiJ_G0026237) Crnn (MGP_SPRETEiJ_G0026238) Flg (MGP_SPRETEiJ_G0026240) ##21 MGP_SPRETEiJ_G0026241 #21 MGP_SPRETEiJ_G0026242 Tchh (MGP_SPRETEiJ_G0026243) Tchhl1 (MGP_SPRETEiJ_G0026244) MGP_SPRETEiJ_G0026245 #22 S100a10 (MGP_SPRETEiJ_G0026246) #23 Them4 (MGP_SPRETEiJ_G0026247) #24 Them5 (MGP_SPRETEiJ_G0026248) #25 C2cd4d (MGP_SPRETEiJ_G0026249) Rorc (MGP_SPRETEiJ_G0026250) #26 Lingo4 (MGP_SPRETEiJ_G0026251) #27 Tdrkh (MGP_SPRETEiJ_G0026252) #28 MGP_SPRETEiJ_G0026253 #29 Mrpl9 (MGP_SPRETEiJ_G0026254) #30 Riiad1 (MGP_SPRETEiJ_G0026255) Celf3 (MGP_SPRETEiJ_G0026256) #31 Snx27 (MGP_SPRETEiJ_G0026257) #32 MGP_SPRETEiJ_G0026258 #33 MGP_SPRETEiJ_G0026259 MGP_SPRETEiJ_G0026260 Ryukyu mouse MODERN SPECIES 12 MGP_CAROLIEiJ_G0025288 #14 MGP_CAROLIEiJ_G0025289 #14 MGP_CAROLIEiJ_G0025290 #14 MGP_CAROLIEiJ_G0025291 #14 MGP_CAROLIEiJ_G0025292 #14 Crct1 (MGP_CAROLIEiJ_G0025293) Lce1m (MGP_CAROLIEiJ_G0025294) Crnn (MGP_CAROLIEiJ_G0025295) MGP_CAROLIEiJ_G0025296 #17 Flg (MGP_CAROLIEiJ_G0025297) ##21 MGP_CAROLIEiJ_G0025298 MGP_CAROLIEiJ_G0025299 #21 MGP_CAROLIEiJ_G0025300 MGP_CAROLIEiJ_G0025301 Tchhl1 (MGP_CAROLIEiJ_G0025302) S100a11 (MGP_CAROLIEiJ_G0025303) #22 S100a10 (MGP_CAROLIEiJ_G0025304) #23 MGP_CAROLIEiJ_G0025305 #24 MGP_CAROLIEiJ_G0025306 #25 C2cd4d (MGP_CAROLIEiJ_G0025307) Rorc (MGP_CAROLIEiJ_G0025308) #26 Lingo4 (MGP_CAROLIEiJ_G0025309) #27 Tdrkh (MGP_CAROLIEiJ_G0025310) #28 MGP_CAROLIEiJ_G0025311 #29 Mrpl9 (MGP_CAROLIEiJ_G0025312) #30 Riiad1 (MGP_CAROLIEiJ_G0025313) Celf3 (MGP_CAROLIEiJ_G0025314) #31 Snx27 (MGP_CAROLIEiJ_G0025315) #32 Tuft1 (MGP_CAROLIEiJ_G0025316) #33 MGP_CAROLIEiJ_G0025317 MGP_CAROLIEiJ_G0025318 Shrew mouse MODERN SPECIES 17 Kprp (MGP_PahariEiJ_G0026730) Lce1l (MGP_PahariEiJ_G0026731) 2310050C09Rik (MGP_PahariEiJ_G0026732) #12 MGP_PahariEiJ_G0026733 #14 MGP_PahariEiJ_G0026734 #14 MGP_PahariEiJ_G0026735 #14 MGP_PahariEiJ_G0026736 #14 MGP_PahariEiJ_G0026737 #14 MGP_PahariEiJ_G0026738 #14 Crct1 (MGP_PahariEiJ_G0026739) Lce1m (MGP_PahariEiJ_G0026740) Crnn (MGP_PahariEiJ_G0026741) MGP_PahariEiJ_G0026742 #17 MGP_PahariEiJ_G0026744 Tchhl1 (MGP_PahariEiJ_G0026745) S100a11 (MGP_PahariEiJ_G0026746) #22 S100a10 (MGP_PahariEiJ_G0026747) #23 Them4 (MGP_PahariEiJ_G0026748) #24 Them5 (MGP_PahariEiJ_G0026749) #25 C2cd4d (MGP_PahariEiJ_G0026750) Rorc (MGP_PahariEiJ_G0026751) #26 Lingo4 (MGP_PahariEiJ_G0026752) #27 Tdrkh (MGP_PahariEiJ_G0026753) #28 MGP_PahariEiJ_G0026754 #29 Mrpl9 (MGP_PahariEiJ_G0026755) #30 MGP_PahariEiJ_G0026756 Celf3 (MGP_PahariEiJ_G0026757) #31 Snx27 (MGP_PahariEiJ_G0026758) #32 Tuft1 (MGP_PahariEiJ_G0026759) #33 MGP_PahariEiJ_G0026760 Pogz (MGP_PahariEiJ_G0026761) #35 Upper Galilee mountains blind mole rat MODERN SPECIES 593 ENSNGAG00000015477 #21 S100a11 (ENSNGAG00000016757) #22 S100a10 (ENSNGAG00000011461) #23 Them4 (ENSNGAG00000012370) #24 Them5 (ENSNGAG00000013042) #25 C2cd4d (ENSNGAG00000013377) Rorc (ENSNGAG00000016436) #26 Lingo4 (ENSNGAG00000016843) #27 Tdrkh (ENSNGAG00000017825) #28 Oaz3 (ENSNGAG00000019961) #29 Mrpl9 (ENSNGAG00000010578) #30 Riiad1 (ENSNGAG00000017842) Celf3 (ENSNGAG00000021612) #31 Snx27 (ENSNGAG00000013411) #32 Tuft1 (ENSNGAG00000016432) #33 ENSNGAG00000012043 Pogz (ENSNGAG00000006487) #35 Tree shrew MODERN SPECIES 4986 ENSTBEG00000016491 ENSTBEG00000016356 ENSTBEG00000016141 #22 S100A10 (ENSTBEG00000016106) #23