Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES 8 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00940000154415.z.b ##22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000164353 ENSGT00940000162928 #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 Rodentia_A ANCESTRAL SPECIES 6 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000164353 ENSGT00940000162928 #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Sciuridae DUPLICATION Sciuridae ANCESTRAL SPECIES 5 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676.g #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b.e #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000162062 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000164353 ENSGT00940000162928 #32 ENSGT00940000161007 #33 Marmotini ANCESTRAL SPECIES 7 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676.g #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b.e #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000164353 ENSGT00940000162928 #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Marmotini_b ANCESTRAL SPECIES 50 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676.g #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b.e #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000162928 #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Squirrel MODERN SPECIES 170 ANKRD27 (ENSSTOG00000013613) #7 RGS9BP (ENSSTOG00000027616) #8 ENSSTOG00000031724 #9 TDRD12 (ENSSTOG00000013638) #10 SLC7A9 (ENSSTOG00000013674) #11 CEP89 (ENSSTOG00000019373) #12 RHPN2 (ENSSTOG00000002103) #13 GPATCH1 (ENSSTOG00000003720) #14 LRP3 (ENSSTOG00000009443) #15 SLC7A10 (ENSSTOG00000009450) #16 ENSSTOG00000027963 #17 CEBPG (ENSSTOG00000007596) #18 PEPD (ENSSTOG00000007602) #19 CHST8 (ENSSTOG00000007349) #20 KCTD15 (ENSSTOG00000006412) #21 LSM14A (ENSSTOG00000002785) #22 GARRE1 (ENSSTOG00000002560) #23 GPI (ENSSTOG00000002576) #24 PDCD2L (ENSSTOG00000002593) #25 UBA2 (ENSSTOG00000002605) #26 WTIP (ENSSTOG00000021248) #27 ENSSTOG00000020391 #28 ENSSTOG00000034011 #29 ENSSTOG00000003480 #30 ZNF599 (ENSSTOG00000034913) #31 ZNF792 (ENSSTOG00000031445) #32 GRAMD1A (ENSSTOG00000003968) #33 SCN1B (ENSSTOG00000022359) #34 HPN (ENSSTOG00000028691) #35 FXYD3 (ENSSTOG00000011416) #36 LGI4 (ENSSTOG00000011421) #37 Alpin marmot MODERN SPECIES 45 NUDT19 (ENSMMMG00000007175) #9 TDRD12 (ENSMMMG00000007074) #10 SLC7A9 (ENSMMMG00000007036) #11 CEP89 (ENSMMMG00000006832) #12 FAAP24 (ENSMMMG00000006814) RHPN2 (ENSMMMG00000006785) #13 GPATCH1 (ENSMMMG00000006748) #14 ENSMMMG00000006739 LRP3 (ENSMMMG00000006727) #15 SLC7A10 (ENSMMMG00000006705) #16 ENSMMMG00000006703 #17 ENSMMMG00000006690 #18 PEPD (ENSMMMG00000006673) #19 CHST8 (ENSMMMG00000006659) #20 KCTD15 (ENSMMMG00000006641) #21 ENSMMMG00000006622 #22 GARRE1 (ENSMMMG00000006560) #23 GPI (ENSMMMG00000006534) #24 ENSMMMG00000006505 ENSMMMG00000006484 #27 ENSMMMG00000006427 #28 ENSMMMG00000006408 #29 ENSMMMG00000006393 #30 ZNF599 (ENSMMMG00000006387) #31 ZNF30 (ENSMMMG00000006356) ZNF792 (ENSMMMG00000006349) #32 GRAMD1A (ENSMMMG00000006322) #33 HPN (ENSMMMG00000006299) #35 FXYD3 (ENSMMMG00000006287) #36 LGI4 (ENSMMMG00000006277) #37 FXYD1 (ENSMMMG00000006217) ##36 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 8 NUDT19 (ENSSVLG00005021230) #9 TDRD12 (ENSSVLG00005021333) #10 SLC7A9 (ENSSVLG00005021851) #11 CEP89 (ENSSVLG00005021928) #12 ENSSVLG00005021973 RHPN2 (ENSSVLG00005022031) #13 GPATCH1 (ENSSVLG00005022166) #14 WDR88 (ENSSVLG00005022304) LRP3 (ENSSVLG00005022405) #15 SLC7A10 (ENSSVLG00005022473) #16 CEBPA (ENSSVLG00005022560) #17 CEBPG (ENSSVLG00005022576) #18 PEPD (ENSSVLG00005022623) #19 CHST8 (ENSSVLG00005022924) #20 KCTD15 (ENSSVLG00005022944) #21 ENSSVLG00005023009 #22 GARRE1 (ENSSVLG00005023064) #23 GPI (ENSSVLG00005023120) #24 PDCD2L (ENSSVLG00005023151) #25 ENSSVLG00005023196 #26 WTIP (ENSSVLG00005023294) #27 ENSSVLG00005023328 #28 ENSSVLG00005023382 #29 ENSSVLG00005023418 ENSSVLG00005023438 ENSSVLG00005023461 ZNF599 (ENSSVLG00005023484) #31 ENSSVLG00005023560 ENSSVLG00005023573 ENSSVLG00005023600 ENSSVLG00005023627 Eurasian red squirrel MODERN SPECIES 1 TFDP2 (ENSSVLG00005008716) ENSSVLG00005008823 GK5 (ENSSVLG00005008881) XRN1 (ENSSVLG00005009003) ATR (ENSSVLG00005009179) PLS1 (ENSSVLG00005009713) ENSSVLG00005009814 TRPC1 (ENSSVLG00005009874) ENSSVLG00005009949 PCOLCE2 (ENSSVLG00005009992) PAQR9 (ENSSVLG00005010124) U2SURP (ENSSVLG00005010214) CHST2 (ENSSVLG00005011831) SLC9A9 (ENSSVLG00005011865) DIPK2A (ENSSVLG00005011903) ENSSVLG00005011980 #22 PLOD2 (ENSSVLG00005012138) PLSCR4 (ENSSVLG00005012337) ENSSVLG00005012558 PLSCR1 (ENSSVLG00005012636) PLSCR5 (ENSSVLG00005012728) ZIC4 (ENSSVLG00005012907) ZIC1 (ENSSVLG00005013067) ENSSVLG00005013147 AGTR1 (ENSSVLG00005013217) CPB1 (ENSSVLG00005013271) CPA3 (ENSSVLG00005013362) GYG1 (ENSSVLG00005013712) HLTF (ENSSVLG00005013865) HPS3 (ENSSVLG00005014027) CP (ENSSVLG00005014272) Sciuridae ANCESTRAL SPECIES 34 ENSGT00940000155454 ENSGT00940000155219 ENSGT00480000042679.b.b ENSGT00390000013700 ENSGT00950000186331 ENSGT00940000157039.b ENSGT00390000013956 ENSGT00940000155175.A ENSGT00940000156877 ENSGT00950000183174.B.b ENSGT00390000011709 ENSGT00390000006601 ENSGT00940000158106 ENSGT00940000153313.B ENSGT01070000253816.a.a.b ENSGT00940000154415.`b.f ##22 ENSGT00940000154512.a ENSGT00390000013820 ENSGT00940000159907 ENSGT00390000006788.a.b ENSGT00390000005130 ENSGT00390000000693 ENSGT00940000162467.b ENSGT00940000159144.B ENSGT00390000003758 ENSGT00390000012569.b ENSGT00940000159552 ENSGT00390000016051.u.b ENSGT00390000006051.b.f ENSGT00390000006051.a.b.a.a ENSGT00940000158961 Marmotini ANCESTRAL SPECIES ENSGT00940000154415.`b.f ##22 Alpin marmot MODERN SPECIES 13 PCDH8 (ENSMMMG00000000439) CNMD (ENSMMMG00000000405) SUGT1 (ENSMMMG00000000341) ENSMMMG00000000315 ELF1 (ENSMMMG00000000224) ENSMMMG00000000196 WBP4 (ENSMMMG00000000179) KBTBD7 (ENSMMMG00000000126) MTRF1 (ENSMMMG00000000091) NAA16 (ENSMMMG00000000060) RGCC (ENSMMMG00000023619) VWA8 (ENSMMMG00000023535) DGKH (ENSMMMG00000023481) AKAP11 (ENSMMMG00000023475) TNFSF11 (ENSMMMG00000023474) ENSMMMG00000023473 ##22 EPSTI1 (ENSMMMG00000023471) ENOX1 (ENSMMMG00000023468) ENSMMMG00000023467 CCDC122 (ENSMMMG00000023465) LACC1 (ENSMMMG00000023463) TSC22D1 (ENSMMMG00000023448) NUFIP1 (ENSMMMG00000023439) ENSMMMG00000023437 ENSMMMG00000023435 KCTD4 (ENSMMMG00000023434) ENSMMMG00000023432 ENSMMMG00000023427 SLC25A30 (ENSMMMG00000023425) COG3 (ENSMMMG00000023415) CBY2 (ENSMMMG00000023405) Marmotini_b ANCESTRAL SPECIES ENSGT00940000154415.`b.f ##22 Arctic ground squirrel MODERN SPECIES 719 AKAP11 (ENSUPAG00010011214) TNFSF11 (ENSUPAG00010011256) ENSUPAG00010011270 ##22 Eurasian red squirrel MODERN SPECIES 13 OLFM4 (ENSSVLG00005004306) PCDH8 (ENSSVLG00005004344) CNMD (ENSSVLG00005004380) SUGT1 (ENSSVLG00005004421) ENSSVLG00005004459 ELF1 (ENSSVLG00005004493) WBP4 (ENSSVLG00005004520) ENSSVLG00005004557 ENSSVLG00005004565 NAA16 (ENSSVLG00005004585) RGCC (ENSSVLG00005004637) VWA8 (ENSSVLG00005004690) DGKH (ENSSVLG00005000391) AKAP11 (ENSSVLG00005000468) TNFSF11 (ENSSVLG00005000540) ENSSVLG00005000585 ##22 FAM216B (ENSSVLG00005000610) EPSTI1 (ENSSVLG00005000671) DNAJC15 (ENSSVLG00005000749) ENOX1 (ENSSVLG00005000776) CCDC122 (ENSSVLG00005000800) LACC1 (ENSSVLG00005000824) SERP2 (ENSSVLG00005000867) TSC22D1 (ENSSVLG00005000900) NUFIP1 (ENSSVLG00005000955) ENSSVLG00005000987 ENSSVLG00005001012 ENSSVLG00005001028 ENSSVLG00005001046 KCTD4 (ENSSVLG00005001062) ENSSVLG00005001090 Hystricomorpha ANCESTRAL SPECIES 2 ENSGT00940000161100 ENSGT00390000002748 ENSGT00390000016319 ENSGT00390000005702 ENSGT00940000161496 ENSGT00940000162716 ENSGT00940000160881 ENSGT00940000156204 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00950000182890.B.b.i.a ENSGT00940000162928.k #32 ENSGT00940000162928.l #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 20 KMT2B (ENSHGLG00000015062) ENSHGLG00000050908 ZBTB32 (ENSHGLG00000015654) UPK1A (ENSHGLG00000015606) ENSHGLG00000015135 ENSHGLG00000015213 #15 ENSHGLG00000015188 #16 ENSHGLG00000013022 CEBPA (ENSHGLG00000043594) #17 ENSHGLG00000004838 ENSHGLG00000041808 #18 PEPD (ENSHGLG00000011240) #19 CHST8 (ENSHGLG00000008720) #20 KCTD15 (ENSHGLG00000034885) #21 ENSHGLG00000042419 ENSHGLG00000007321 #22 GARRE1 (ENSHGLG00000013898) #23 Gpi (ENSHGLG00000015058) #24 PDCD2L (ENSHGLG00000019039) #25 UBA2 (ENSHGLG00000013209) #26 WTIP (ENSHGLG00000044055) #27 ENSHGLG00000013473 #28 ENSHGLG00000037952 ENSHGLG00000041394 ENSHGLG00000044339 ENSHGLG00000009826 #30 ZNF599 (ENSHGLG00000047822) #31 ENSHGLG00000013668 ENSHGLG00000006199 ENSHGLG00000041073 ENSHGLG00000010197 #32 Naked mole-rat female MODERN SPECIES 2 ENSHGLG00000018786 KL (ENSHGLG00000005334) ENSHGLG00000006974 PDS5B (ENSHGLG00000006670) ENSHGLG00000018160 ENSHGLG00000039341 N4BP2L1 (ENSHGLG00000006971) BRCA2 (ENSHGLG00000008590) ZAR1L (ENSHGLG00000006253) ENSHGLG00000041019 ENSHGLG00000009415 ENSHGLG00000036768 ENSHGLG00000009276 ENSHGLG00000002160 ENSHGLG00000006352 ENSHGLG00000018220 #22 ENSHGLG00000047678 ENSHGLG00000013471 ENSHGLG00000039932 HSPH1 (ENSHGLG00000006908) TEX26 (ENSHGLG00000018916) MEDAG (ENSHGLG00000037818) ALOX5AP (ENSHGLG00000013689) USPL1 (ENSHGLG00000036213) ENSHGLG00000003352 KATNAL1 (ENSHGLG00000003538) UBL3 (ENSHGLG00000040587) ENSHGLG00000033244 ENSHGLG00000019220 ENSHGLG00000013589 ENSHGLG00000012383 #7 Naked mole-rat female MODERN SPECIES 23 UBTD2 (ENSHGLG00000044520) SH3PXD2B (ENSHGLG00000009542) NEURL1B (ENSHGLG00000039883) DUSP1 (ENSHGLG00000012633) ERGIC1 (ENSHGLG00000050911) ENSHGLG00000017100 ENSHGLG00000018219 ENSHGLG00000021190 ENSHGLG00000017817 BNIP1 (ENSHGLG00000018031) NKX2-5 (ENSHGLG00000017269) STC2 (ENSHGLG00000017592) ENSHGLG00000041881 CPEB4 (ENSHGLG00000008897) C5orf47 (ENSHGLG00000040572) ENSHGLG00000049916 #22 ENSHGLG00000041184 ##22 NSG2 (ENSHGLG00000006062) MSX2 (ENSHGLG00000017569) ENSHGLG00000049074 ENSHGLG00000036934 DRD1 (ENSHGLG00000016781) SFXN1 (ENSHGLG00000045847) HRH2 (ENSHGLG00000018733) CPLX2 (ENSHGLG00000033963) THOC3 (ENSHGLG00000008773) ENSHGLG00000034727 ENSHGLG00000036140 ENSHGLG00000006385 ENSHGLG00000040734 ENSHGLG00000005591 Naked mole-rat female MODERN SPECIES 8 ENSHGLG00000041415 ENSHGLG00000000792 ENSHGLG00000036390 ENSHGLG00000032896 ENSHGLG00000000750 ENSHGLG00000000765 YEATS4 (ENSHGLG00000005930) ENSHGLG00000020270 FRS2 (ENSHGLG00000004690) ENSHGLG00000008737 ENSHGLG00000032589 BEST3 (ENSHGLG00000005639) ENSHGLG00000033107 ENSHGLG00000015773 ENSHGLG00000016095 ENSHGLG00000012413 #22 ENSHGLG00000008390 ENSHGLG00000039489 ENSHGLG00000004965 PTPRB (ENSHGLG00000017872) ENSHGLG00000035838 PTPRR (ENSHGLG00000005019) ENSHGLG00000048295 TSPAN8 (ENSHGLG00000009287) LGR5 (ENSHGLG00000004903) ZFC3H1 (ENSHGLG00000014297) ENSHGLG00000040461 ENSHGLG00000012561 ENSHGLG00000012420 ENSHGLG00000032222 TBC1D15 (ENSHGLG00000012156) Hystricomorpha_a ANCESTRAL SPECIES 11 ENSGT00390000001986 ENSGT00940000161100 ENSGT00390000002748 ENSGT00390000016319 ENSGT00390000005702 ENSGT00940000161496 ENSGT00940000160881 ENSGT00940000156204 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00950000182890.B.b.i.a ENSGT00940000162928.k #32 ENSGT00940000162928.l #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 Hystricomorpha_b ANCESTRAL SPECIES 8 ENSGT00940000155110 ENSGT00390000001986 ENSGT00940000161100 ENSGT00390000002748 ENSGT00390000016319 ENSGT00940000161496 ENSGT00940000160881 ENSGT00940000156204 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00950000182890.B.b.i.a ENSGT00940000162928.k #32 ENSGT00940000162928.l #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 175 PROSER3 (ENSCLAG00000011579) HSPB6 (ENSCLAG00000010884) LIN37 (ENSCLAG00000011722) PSENEN (ENSCLAG00000014972) KMT2B (ENSCLAG00000012114) ENSCLAG00000014824 UPK1A (ENSCLAG00000013579) COX6B1 (ENSCLAG00000014823) LRP3 (ENSCLAG00000011669) #15 SLC7A10 (ENSCLAG00000015288) #16 CEBPA (ENSCLAG00000010794) #17 CEBPG (ENSCLAG00000011142) #18 PEPD (ENSCLAG00000013269) #19 CHST8 (ENSCLAG00000014258) #20 KCTD15 (ENSCLAG00000013292) #21 ENSCLAG00000012837 #22 GARRE1 (ENSCLAG00000015049) #23 GPI (ENSCLAG00000015986) #24 PDCD2L (ENSCLAG00000015773) #25 UBA2 (ENSCLAG00000014260) #26 WTIP (ENSCLAG00000011080) #27 ENSCLAG00000011327 #29 ENSCLAG00000013337 #28 ENSCLAG00000015812 #30 ZNF599 (ENSCLAG00000015514) #31 ENSCLAG00000012457 ENSCLAG00000015294 #32 ENSCLAG00000014971 #32 GRAMD1A (ENSCLAG00000016126) #33 SCN1B (ENSCLAG00000014191) #34 HPN (ENSCLAG00000013336) #35 Long-tailed chinchilla MODERN SPECIES 160 CHRND (ENSCLAG00000014396) CHRNG (ENSCLAG00000008928) EIF4E2 (ENSCLAG00000008745) ENSCLAG00000008295 KCNJ13 (ENSCLAG00000006955) GIGYF2 (ENSCLAG00000009747) SNORC (ENSCLAG00000010644) NGEF (ENSCLAG00000016466) NEU2 (ENSCLAG00000012674) INPP5D (ENSCLAG00000015629) ATG16L1 (ENSCLAG00000010328) SAG (ENSCLAG00000009439) DGKD (ENSCLAG00000011641) USP40 (ENSCLAG00000008763) ENSCLAG00000011557 ENSCLAG00000014326 #22 ENSCLAG00000011830 MROH2A (ENSCLAG00000016264) HJURP (ENSCLAG00000012207) TRPM8 (ENSCLAG00000013665) SPP2 (ENSCLAG00000016002) ARL4C (ENSCLAG00000010525) SH3BP4 (ENSCLAG00000009544) AGAP1 (ENSCLAG00000015901) GBX2 (ENSCLAG00000008221) ENSCLAG00000007670 IQCA1 (ENSCLAG00000008889) ACKR3 (ENSCLAG00000008658) Degu MODERN SPECIES 124 HSPB6 (ENSODEG00000016136) LIN37 (ENSODEG00000015303) PSENEN (ENSODEG00000015490) KMT2B (ENSODEG00000014424) ENSODEG00000014837 UPK1A (ENSODEG00000014934) COX6B1 (ENSODEG00000014806) ENSODEG00000020284 LRP3 (ENSODEG00000015710) #15 SLC7A10 (ENSODEG00000014633) #16 PEPD (ENSODEG00000014789) #19 CHST8 (ENSODEG00000014339) #20 KCTD15 (ENSODEG00000014330) #21 ENSODEG00000020231 ENSODEG00000020314 LSM14A (ENSODEG00000014352) #22 GARRE1 (ENSODEG00000014705) #23 GPI (ENSODEG00000014778) #24 PDCD2L (ENSODEG00000016213) #25 ENSODEG00000015301 WTIP (ENSODEG00000015801) #27 ENSODEG00000015943 #28 ENSODEG00000015444 ENSODEG00000014251 #33 SCN1B (ENSODEG00000015355) #34 HPN (ENSODEG00000014955) #35 FXYD3 (ENSODEG00000014504) #36 LGI4 (ENSODEG00000014287) #37 FXYD1 (ENSODEG00000014043) ##36 ENSODEG00000015329 ENSODEG00000014231 Guinea pig MODERN SPECIES 52 ARHGAP33 (ENSCPOG00000019450) HSPB6 (ENSCPOG00000032854) LIN37 (ENSCPOG00000003730) PSENEN (ENSCPOG00000035743) IGFLR1 (ENSCPOG00000003725) KMT2B (ENSCPOG00000003718) ENSCPOG00000030326 UPK1A (ENSCPOG00000003519) COX6B1 (ENSCPOG00000040146) LRP3 (ENSCPOG00000013712) #15 SLC7A10 (ENSCPOG00000040440) #16 ENSCPOG00000023297 #17 PEPD (ENSCPOG00000014494) #19 CHST8 (ENSCPOG00000000793) #20 KCTD15 (ENSCPOG00000040268) #21 LSM14A (ENSCPOG00000025803) #22 GARRE1 (ENSCPOG00000027055) #23 GPI (ENSCPOG00000008562) #24 PDCD2L (ENSCPOG00000006016) #25 UBA2 (ENSCPOG00000010543) #26 WTIP (ENSCPOG00000036934) #27 ENSCPOG00000030617 ZNF8 (ENSCPOG00000031529) RPS5 (ENSCPOG00000023995) ZNF584 (ENSCPOG00000031428) ENSCPOG00000021589 ENSCPOG00000039862 ZNF446 (ENSCPOG00000032178) SLC27A5 (ENSCPOG00000012620) ZBTB45 (ENSCPOG00000021221) ENSCPOG00000005745 Rodentia_B ANCESTRAL SPECIES 20 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Kangaroo rat MODERN SPECIES 411 Ankrd27 (ENSDORG00000001832) #7 Rgs9bp (ENSDORG00000015832) #8 ENSDORG00000026153 #9 Tdrd12 (ENSDORG00000012134) #10 Slc7a9 (ENSDORG00000026148) #11 Cep89 (ENSDORG00000013896) #12 Rhpn2 (ENSDORG00000010758) #13 Gpatch1 (ENSDORG00000012546) #14 Lrp3 (ENSDORG00000002320) #15 Slc7a10 (ENSDORG00000002321) #16 Cebpa (ENSDORG00000027904) #17 Cebpg (ENSDORG00000027852) #18 Pepd (ENSDORG00000001950) #19 Chst8 (ENSDORG00000025327) #20 Kctd15 (ENSDORG00000025482) #21 Lsm14a (ENSDORG00000016326) #22 Garre1 (ENSDORG00000012861) #23 Gpi1 (ENSDORG00000009716) #24 Pdcd2l (ENSDORG00000024116) #25 ENSDORG00000008638 ENSDORG00000025989 #27 ENSDORG00000011150 #33 Scn1b (ENSDORG00000011005) #34 Hpn (ENSDORG00000025786) #35 Fxyd3 (ENSDORG00000026248) #36 ENSDORG00000024390 #37 Fxyd1 (ENSDORG00000030165) ##36 Fxyd7 (ENSDORG00000019853) ##36 ENSDORG00000001949 Lsr (ENSDORG00000011335) Usf2 (ENSDORG00000026323) Myomorpha ANCESTRAL SPECIES 20 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Muroidea ANCESTRAL SPECIES 18 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Muroidea_A ANCESTRAL SPECIES 20 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Cricetidae ANCESTRAL SPECIES 26 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00960000190924 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Cricetinae ANCESTRAL SPECIES 39 ENSGT00940000153725.a.b.a #8 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00900000141269 #29 ENSGT00390000009774 #28 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 ENSGT00940000153062.C ##36 ENSGT00940000153062.A.b.a ##36 ENSGT00990000203831 Chinese hamster chok1gshd MODERN SPECIES 282 Rgs9bp (ENSCGRG00001006642) #8 Nudt19 (ENSCGRG00001017272) #9 Tdrd12 (ENSCGRG00001021407) #10 Slc7a9 (ENSCGRG00001005745) #11 ENSCGRG00001000081 Faap24 (ENSCGRG00001012863) Rhpn2 (ENSCGRG00001013772) #13 Gpatch1 (ENSCGRG00001016736) #14 Lrp3 (ENSCGRG00001000089) #15 Slc7a10 (ENSCGRG00001006085) #16 Cebpa (ENSCGRG00001017833) #17 Cebpg (ENSCGRG00001013623) #18 Pepd (ENSCGRG00001000455) #19 Chst8 (ENSCGRG00001001826) #20 Kctd15 (ENSCGRG00001010841) #21 Lsm14a (ENSCGRG00001015276) #22 Garre1 (ENSCGRG00001014066) #23 GPI (ENSCGRG00001001963) #24 Pdcd2l (ENSCGRG00001019556) #25 Uba2 (ENSCGRG00001001926) #26 Wtip (ENSCGRG00001011000) #27 ENSCGRG00001016534 #28 ENSCGRG00001014673 #28 ENSCGRG00001015621 #29 ENSCGRG00001016204 #28 ENSCGRG00001019961 #31 Gramd1a (ENSCGRG00001020788) #33 Scn1b (ENSCGRG00001019944) #34 Hpn (ENSCGRG00001000276) #35 Fxyd3 (ENSCGRG00001010930) #36 Lgi4 (ENSCGRG00001012988) #37 Golden Hamster MODERN SPECIES 734 Ankrd27 (ENSMAUG00000006822) #7 Rgs9bp (ENSMAUG00000010703) #8 Nudt19 (ENSMAUG00000012791) #9 Tdrd12 (ENSMAUG00000013767) #10 Slc7a9 (ENSMAUG00000016182) #11 Cep89 (ENSMAUG00000010643) #12 Faap24 (ENSMAUG00000015057) Rhpn2 (ENSMAUG00000002669) #13 Lrp3 (ENSMAUG00000022101) #15 Slc7a10 (ENSMAUG00000007653) #16 Cebpa (ENSMAUG00000003660) #17 Cebpg (ENSMAUG00000007633) #18 Pepd (ENSMAUG00000012230) #19 Chst8 (ENSMAUG00000006413) #20 Kctd15 (ENSMAUG00000019883) #21 Lsm14a (ENSMAUG00000011145) #22 Garre1 (ENSMAUG00000016490) #23 Gpi1 (ENSMAUG00000014174) #24 Pdcd2l (ENSMAUG00000008601) #25 Uba2 (ENSMAUG00000006937) #26 Wtip (ENSMAUG00000009707) #27 ENSMAUG00000009920 #29 ENSMAUG00000021853 #28 ENSMAUG00000017020 #29 ENSMAUG00000014474 #28 ENSMAUG00000013091 #28 ENSMAUG00000016376 #28 ENSMAUG00000013656 #28 ENSMAUG00000008100 ENSMAUG00000021884 #33 Scn1b (ENSMAUG00000000604) #34 Cricetidae_B ANCESTRAL SPECIES 25 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00960000190924 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000159953.C #31 ENSGT00950000182858.A.a.b.b ENSGT00950000182858.A.a.b.a ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Northern American deer mouse MODERN SPECIES ENSPEMG00000022578 Tdrd12 (ENSPEMG00000009233) #10 Slc7a9 (ENSPEMG00000020346) #11 Cep89 (ENSPEMG00000020557) #12 Faap24 (ENSPEMG00000021083) Rhpn2 (ENSPEMG00000020482) #13 Gpatch1 (ENSPEMG00000000636) #14 ENSPEMG00000024856 Lrp3 (ENSPEMG00000000320) #15 Slc7a10 (ENSPEMG00000007269) #16 ENSPEMG00000020956 #17 Cebpg (ENSPEMG00000002139) #18 Pepd (ENSPEMG00000021596) #19 Chst8 (ENSPEMG00000020376) #20 Kctd15 (ENSPEMG00000007336) #21 Lsm14a (ENSPEMG00000013718) #22 Garre1 (ENSPEMG00000006373) #23 Gpi1 (ENSPEMG00000013783) #24 Pdcd2l (ENSPEMG00000011448) #25 Uba2 (ENSPEMG00000000201) #26 Wtip (ENSPEMG00000021116) #27 ENSPEMG00000018775 #28 ENSPEMG00000017380 #29 ENSPEMG00000029474 #31 ENSPEMG00000030734 ENSPEMG00000024709 Gramd1a (ENSPEMG00000016850) #33 Scn1b (ENSPEMG00000013209) #34 Hpn (ENSPEMG00000014951) #35 Fxyd3 (ENSPEMG00000012026) #36 Lgi4 (ENSPEMG00000030129) #37 Prairie vole MODERN SPECIES 115 Rgs9bp (ENSMOCG00000002309) #8 Nudt19 (ENSMOCG00000017828) #9 Tdrd12 (ENSMOCG00000002366) #10 Slc7a9 (ENSMOCG00000001789) #11 Cep89 (ENSMOCG00000000261) #12 Faap24 (ENSMOCG00000017357) Rhpn2 (ENSMOCG00000015268) #13 Gpatch1 (ENSMOCG00000000174) #14 Lrp3 (ENSMOCG00000007412) #15 Slc7a10 (ENSMOCG00000020699) #16 ENSMOCG00000001852 Cebpg (ENSMOCG00000008611) #18 Pepd (ENSMOCG00000014173) #19 Chst8 (ENSMOCG00000016140) #20 Kctd15 (ENSMOCG00000007238) #21 Lsm14a (ENSMOCG00000008292) #22 Garre1 (ENSMOCG00000001285) #23 Gpi1 (ENSMOCG00000000495) #24 Pdcd2l (ENSMOCG00000007635) #25 Uba2 (ENSMOCG00000017586) #26 Murinae ANCESTRAL SPECIES 19 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774.e #28 ENSGT00900000141269.i #29 ENSGT00390000009774.f #28 ENSGT00900000141269.j.a #29 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Mus ANCESTRAL SPECIES ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774.e #28 ENSGT00900000141269.i.a #29 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 ENSGT00940000153062.C ##36 ENSGT00940000153062.A.b.a ##36 Mus_A ANCESTRAL SPECIES 1 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774.e.c #28 ENSGT00900000141269.i.a #29 ENSGT00900000141269.j.b.b #29 ENSGT00390000009774.f.a.a #28 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 ENSGT00940000162018 #37 Mus_B ANCESTRAL SPECIES ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774.e.d #28 ENSGT00390000009774.e.c.b #28 ENSGT00900000141269.i.a #29 ENSGT00390000009774.e.c.a #28 ENSGT00900000141269.i.b #29 ENSGT00390000009774.f.a.b #28 ENSGT00900000141269.j.a.a #29 ENSGT00390000009774.f.b.a.a #28 ENSGT00900000141269.j.b.a #29 Mouse MODERN SPECIES 16 Nudt19 (ENSMUSG00000034875) #9 Tdrd12 (ENSMUSG00000030491) #10 Slc7a9 (ENSMUSG00000030492) #11 Cep89 (ENSMUSG00000023072) #12 Faap24 (ENSMUSG00000030493) Rhpn2 (ENSMUSG00000030494) #13 Gpatch1 (ENSMUSG00000063808) #14 Wdr88 (ENSMUSG00000118454) Lrp3 (ENSMUSG00000001802) #15 Slc7a10 (ENSMUSG00000030495) #16 Cebpa (ENSMUSG00000034957) #17 Cebpg (ENSMUSG00000056216) #18 Pepd (ENSMUSG00000063931) #19 Chst8 (ENSMUSG00000060402) #20 Kctd15 (ENSMUSG00000030499) #21 Lsm14a (ENSMUSG00000066568) #22 Garre1 (ENSMUSG00000066571) #23 Gpi1 (ENSMUSG00000036427) #24 Pdcd2l (ENSMUSG00000002635) #25 Uba2 (ENSMUSG00000052997) #26 Wtip (ENSMUSG00000036459) #27 Scgb1b30 (ENSMUSG00000078752) #28 Scgb1b27 (ENSMUSG00000066583) #28 Scgb2b27 (ENSMUSG00000066584) #29 Scgb2b26 (ENSMUSG00000066586) #29 Scgb1b24 (ENSMUSG00000078753) #28 Scgb2b24 (ENSMUSG00000046438) #29 Scgb2b21 (ENSMUSG00000099900) #29 Scgb1b20 (ENSMUSG00000094978) #28 Scgb2b20 (ENSMUSG00000094305) #29 Scgb1b19 (ENSMUSG00000095232) #28 Mus_C ANCESTRAL SPECIES 32 ENSGT00420000029858 #9 ENSGT00420000029847 #10 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774.e.d #28 ENSGT00390000009774.e.c.b #28 ENSGT00900000141269.i.a #29 ENSGT00390000009774.e.c.a #28 ENSGT00900000141269.i.b #29 ENSGT00390000009774.f.a.b #28 ENSGT00900000141269.j.a.a #29 ENSGT00900000141269.j.a.b.b.b #29 ENSGT00390000009774.f.b.a.b #28 Steppe mouse MODERN SPECIES 2649 Chst8 (ENSMSIG00000016709) #20 Kctd15 (ENSMSIG00000016721) #21 Lsm14a (ENSMSIG00000016741) #22 ENSMSIG00000016777 Garre1 (ENSMSIG00000016800) #23 Gpi1 (ENSMSIG00000016861) #24 Pdcd2l (ENSMSIG00000016935) #25 Uba2 (ENSMSIG00000016950) #26 ENSMSIG00000016986 #27 Scgb1b30 (ENSMSIG00000017061) #28 spretus MODERN SPECIES 16 Ankrd27 (MGP_SPRETEiJ_G0030689) #7 Rgs9bp (MGP_SPRETEiJ_G0030688) #8 Tdrd12 (MGP_SPRETEiJ_G0030686) #10 Slc7a9 (MGP_SPRETEiJ_G0030685) #11 Cep89 (MGP_SPRETEiJ_G0030684) #12 Faap24 (MGP_SPRETEiJ_G0030683) Rhpn2 (MGP_SPRETEiJ_G0030682) #13 Gpatch1 (MGP_SPRETEiJ_G0030681) #14 Lrp3 (MGP_SPRETEiJ_G0030680) #15 Slc7a10 (MGP_SPRETEiJ_G0030679) #16 Cebpa (MGP_SPRETEiJ_G0030678) #17 Cebpg (MGP_SPRETEiJ_G0030677) #18 Pepd (MGP_SPRETEiJ_G0030676) #19 Chst8 (MGP_SPRETEiJ_G0030675) #20 Kctd15 (MGP_SPRETEiJ_G0030674) #21 Lsm14a (MGP_SPRETEiJ_G0030673) #22 MGP_SPRETEiJ_G0030672 Garre1 (MGP_SPRETEiJ_G0030671) #23 Gpi1 (MGP_SPRETEiJ_G0030670) #24 Pdcd2l (MGP_SPRETEiJ_G0030669) #25 Uba2 (MGP_SPRETEiJ_G0030668) #26 Wtip (MGP_SPRETEiJ_G0030667) #27 Scgb1b27 (MGP_SPRETEiJ_G0030666) #28 Scgb2b27 (MGP_SPRETEiJ_G0030665) #29 MGP_SPRETEiJ_G0030664 #28 Scgb2b26 (MGP_SPRETEiJ_G0030663) #29 Scgb1b24 (MGP_SPRETEiJ_G0030662) #28 Scgb2b24 (MGP_SPRETEiJ_G0030661) #29 Scgb1b2 (MGP_SPRETEiJ_G0030660) #28 Gramd1a (MGP_SPRETEiJ_G0030659) #33 Scn1b (MGP_SPRETEiJ_G0030658) #34 Ryukyu mouse MODERN SPECIES 16 Rgs9bp (MGP_CAROLIEiJ_G0029589) #8 Nudt19 (MGP_CAROLIEiJ_G0029588) #9 Tdrd12 (MGP_CAROLIEiJ_G0029587) #10 Slc7a9 (MGP_CAROLIEiJ_G0029586) #11 Cep89 (MGP_CAROLIEiJ_G0029585) #12 Faap24 (MGP_CAROLIEiJ_G0029584) Rhpn2 (MGP_CAROLIEiJ_G0029583) #13 Gpatch1 (MGP_CAROLIEiJ_G0029582) #14 Lrp3 (MGP_CAROLIEiJ_G0029581) #15 Slc7a10 (MGP_CAROLIEiJ_G0029580) #16 Cebpa (MGP_CAROLIEiJ_G0029579) #17 Cebpg (MGP_CAROLIEiJ_G0029578) #18 Pepd (MGP_CAROLIEiJ_G0029577) #19 Chst8 (MGP_CAROLIEiJ_G0029576) #20 Kctd15 (MGP_CAROLIEiJ_G0029575) #21 Lsm14a (MGP_CAROLIEiJ_G0029574) #22 MGP_CAROLIEiJ_G0029573 Garre1 (MGP_CAROLIEiJ_G0029572) #23 Gpi1 (MGP_CAROLIEiJ_G0029571) #24 Pdcd2l (MGP_CAROLIEiJ_G0029570) #25 Uba2 (MGP_CAROLIEiJ_G0029569) #26 Wtip (MGP_CAROLIEiJ_G0029568) #27 Scgb1b30 (MGP_CAROLIEiJ_G0029567) #28 MGP_CAROLIEiJ_G0029566 #29 MGP_CAROLIEiJ_G0029565 #29 Scgb1b2 (MGP_CAROLIEiJ_G0029564) #28 Gramd1a (MGP_CAROLIEiJ_G0029563) #33 Scn1b (MGP_CAROLIEiJ_G0029562) #34 Hpn (MGP_CAROLIEiJ_G0029561) #35 Fxyd3 (MGP_CAROLIEiJ_G0029560) #36 Lgi4 (MGP_CAROLIEiJ_G0029559) #37 Shrew mouse MODERN SPECIES Rgs9bp (MGP_PahariEiJ_G0012823) #8 Nudt19 (MGP_PahariEiJ_G0012822) #9 Tdrd12 (MGP_PahariEiJ_G0012821) #10 Slc7a9 (MGP_PahariEiJ_G0012820) #11 Cep89 (MGP_PahariEiJ_G0012819) #12 Faap24 (MGP_PahariEiJ_G0012818) Rhpn2 (MGP_PahariEiJ_G0012817) #13 Gpatch1 (MGP_PahariEiJ_G0012816) #14 Lrp3 (MGP_PahariEiJ_G0012815) #15 Slc7a10 (MGP_PahariEiJ_G0012814) #16 Cebpa (MGP_PahariEiJ_G0012813) #17 Cebpg (MGP_PahariEiJ_G0012812) #18 Pepd (MGP_PahariEiJ_G0012811) #19 Chst8 (MGP_PahariEiJ_G0012810) #20 Kctd15 (MGP_PahariEiJ_G0012809) #21 MGP_PahariEiJ_G0012808 #22 Garre1 (MGP_PahariEiJ_G0012807) #23 Gpi1 (MGP_PahariEiJ_G0012806) #24 Pdcd2l (MGP_PahariEiJ_G0012805) #25 Uba2 (MGP_PahariEiJ_G0012804) #26 Wtip (MGP_PahariEiJ_G0012803) #27 MGP_PahariEiJ_G0012802 #28 MGP_PahariEiJ_G0012801 #28 MGP_PahariEiJ_G0012800 #29 MGP_PahariEiJ_G0012799 #29 MGP_PahariEiJ_G0012798 #28 MGP_PahariEiJ_G0012797 #28 Scgb2b3 (MGP_PahariEiJ_G0012796) #29 Gramd1a (MGP_PahariEiJ_G0012795) #33 Scn1b (MGP_PahariEiJ_G0012794) #34 Hpn (MGP_PahariEiJ_G0012793) #35 Rat MODERN SPECIES AC136661.1 (ENSRNOG00000037380) Tdrd12 (ENSRNOG00000012719) #10 Slc7a9 (ENSRNOG00000012344) #11 Cep89 (ENSRNOG00000012140) #12 Faap24 (ENSRNOG00000022393) Rhpn2 (ENSRNOG00000011885) #13 Snrpg (ENSRNOG00000032232) Gpatch1 (ENSRNOG00000011584) #14 Wdr88 (ENSRNOG00000037393) Lrp3 (ENSRNOG00000011451) #15 Slc7a10 (ENSRNOG00000010938) #16 Cebpg (ENSRNOG00000021144) #18 AABR07002969.1 (ENSRNOG00000052945) #19 RGD1560088 (ENSRNOG00000062485) Kctd15 (ENSRNOG00000021137) #21 Lsm14a (ENSRNOG00000021133) #22 Garre1 (ENSRNOG00000021129) #23 Gpi (ENSRNOG00000023150) #24 Pdcd2l (ENSRNOG00000021119) #25 Uba2 (ENSRNOG00000021113) #26 Wtip (ENSRNOG00000023296) #27 Scgb1b30 (ENSRNOG00000062949) #28 ENSRNOG00000063830 #29 Scgb1b24 (ENSRNOG00000069356) #28 Scgb2b24 (ENSRNOG00000023314) #29 Scgb2b2 (ENSRNOG00000023367) #29 Apbh (ENSRNOG00000064903) #28 RGD1563307 (ENSRNOG00000069776) RGD1561430 (ENSRNOG00000069798) Gramd1a (ENSRNOG00000021106) #33 Scn1b (ENSRNOG00000021102) #34 Upper Galilee mountains blind mole rat MODERN SPECIES 1067 Nudt19 (ENSNGAG00000019145) #9 Tdrd12 (ENSNGAG00000000793) #10 Slc7a9 (ENSNGAG00000009688) #11 Cep89 (ENSNGAG00000007623) #12 Faap24 (ENSNGAG00000005467) Rhpn2 (ENSNGAG00000003058) #13 ENSNGAG00000017534 Gpatch1 (ENSNGAG00000012455) #14 Lrp3 (ENSNGAG00000010395) #15 Slc7a10 (ENSNGAG00000009565) #16 Cebpa (ENSNGAG00000002763) #17 Cebpg (ENSNGAG00000007539) #18 Pepd (ENSNGAG00000006312) #19 Chst8 (ENSNGAG00000004945) #20 Kctd15 (ENSNGAG00000002842) #21 Lsm14a (ENSNGAG00000001821) #22 Garre1 (ENSNGAG00000010117) #23 Gpi1 (ENSNGAG00000001274) #24 Pdcd2l (ENSNGAG00000023943) #25 Uba2 (ENSNGAG00000023751) #26 Wtip (ENSNGAG00000017394) #27 ENSNGAG00000018363 #30 Lesser Egyptian jerboa MODERN SPECIES 73 Ankrd27 (ENSJJAG00000016506) #7 Rgs9bp (ENSJJAG00000012886) #8 ENSJJAG00000018149 #10 Slc7a9 (ENSJJAG00000014613) #11 Cep89 (ENSJJAG00000024207) #12 ENSJJAG00000012680 Rhpn2 (ENSJJAG00000001747) #13 Gpatch1 (ENSJJAG00000023765) #14 Lrp3 (ENSJJAG00000017356) #15 Slc7a10 (ENSJJAG00000006090) #16 ENSJJAG00000014105 #17 Cebpg (ENSJJAG00000009499) #18 Pepd (ENSJJAG00000018036) #19 Chst8 (ENSJJAG00000023483) #20 Kctd15 (ENSJJAG00000015923) #21 Lsm14a (ENSJJAG00000017413) #22 Garre1 (ENSJJAG00000002378) #23 Gpi1 (ENSJJAG00000007082) #24 Pdcd2l (ENSJJAG00000002931) #25 ENSJJAG00000000682 #26 Wtip (ENSJJAG00000015388) #27 ENSJJAG00000014992 #28 ENSJJAG00000020022 Zfp420 (ENSJJAG00000013496) Zfp383 (ENSJJAG00000017985) ENSJJAG00000011181 ENSJJAG00000017393 Zfp568 (ENSJJAG00000019062) Zfp14 (ENSJJAG00000001077) Zfp566 (ENSJJAG00000015026) ENSJJAG00000011001 Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00940000154415.z.a ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00940000154415.z.a ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154415.z.a ##22 Naked mole-rat female MODERN SPECIES 2 ENSHGLG00000008798 ENSHGLG00000046472 ENSHGLG00000035032 ENSHGLG00000020347 ENSHGLG00000045715 ENSHGLG00000034169 ENSHGLG00000039595 SLITRK1 (ENSHGLG00000043563) ENSHGLG00000042637 ENSHGLG00000048999 ENSHGLG00000048637 SLITRK6 (ENSHGLG00000000248) SLITRK5 (ENSHGLG00000048548) ENSHGLG00000037714 ENSHGLG00000039195 ENSHGLG00000020258 ##22 ENSHGLG00000001464 ENSHGLG00000001081 ENSHGLG00000046381 GPC5 (ENSHGLG00000000656) GPC6 (ENSHGLG00000001128) ENSHGLG00000035827 ENSHGLG00000039074 ENSHGLG00000040422 DCT (ENSHGLG00000001562) TGDS (ENSHGLG00000000360) GPR180 (ENSHGLG00000002152) ENSHGLG00000034930 ENSHGLG00000006878 ENSHGLG00000008312 ENSHGLG00000048406 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154415.z.a ##22 Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154415.z.a ##22 Degu MODERN SPECIES 117 ENSODEG00000010222 ENSODEG00000010094 ATP6V0A2 (ENSODEG00000009400) DNAH10 (ENSODEG00000009996) CCDC92 (ENSODEG00000008834) NCOR2 (ENSODEG00000009536) ENSODEG00000019559 DHX37 (ENSODEG00000009929) AACS (ENSODEG00000008915) ENSODEG00000019612 ENSODEG00000010443 ENSODEG00000009713 ENSODEG00000009816 ENSODEG00000009405 SLC15A4 (ENSODEG00000009561) ENSODEG00000008825 ##22 ENSODEG00000019685 PIWIL1 (ENSODEG00000010629) RIMBP2 (ENSODEG00000009979) STX2 (ENSODEG00000009934) ENSODEG00000008349 SFSWAP (ENSODEG00000008020) MMP17 (ENSODEG00000008852) ULK1 (ENSODEG00000008683) PUS1 (ENSODEG00000008248) EP400 (ENSODEG00000008132) DDX51 (ENSODEG00000009622) NOC4L (ENSODEG00000007796) GALNT9 (ENSODEG00000007555) ENSODEG00000007770 P2RX2 (ENSODEG00000008787) Rodentia ANCESTRAL SPECIES 8 ENSGT00940000156370 #11 ENSGT00390000018876 #12 ENSGT00390000009456 ENSGT00940000153837.a.b #13 ENSGT00390000007074 #14 ENSGT00940000162291 ENSGT00940000160021 #15 ENSGT00940000156469 #16 ENSGT00940000162646 #17 ENSGT00940000160676 #18 ENSGT00940000153657.B #19 ENSGT00940000159100 #20 ENSGT00940000159496 #21 ENSGT00940000154415.`b #22 ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b ENSGT00940000154415.z.b ##22 ENSGT00390000003210 #23 ENSGT00390000000707 #24 ENSGT00940000158339 #25 ENSGT00550000074924 #26 ENSGT00940000160924 #27 ENSGT00390000009774 #28 ENSGT00900000141269 #29 ENSGT00940000161431 #30 ENSGT00940000159953.C #31 ENSGT00940000164353 ENSGT00940000162928 #32 ENSGT00940000161007 #33 ENSGT00390000018560.a.b #34 ENSGT00940000159697 #35 ENSGT00940000153062.A.a.a.a #36 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Northern American deer mouse MODERN SPECIES 18 Ptger1 (ENSPEMG00000027389) Gipc1 (ENSPEMG00000008496) Dnajb1 (ENSPEMG00000007843) Tecr (ENSPEMG00000008519) Ndufb7 (ENSPEMG00000010565) Prmt9 (ENSPEMG00000029675) Or10k2 (ENSPEMG00000027328) Scoc (ENSPEMG00000024835) Clgn (ENSPEMG00000023114) Mgat4d (ENSPEMG00000022918) Elmod2 (ENSPEMG00000028361) Ucp1 (ENSPEMG00000022488) ENSPEMG00000024217 Tbc1d9 (ENSPEMG00000024048) ENSPEMG00000026256 ENSPEMG00000030162 ##22 Rnf150 (ENSPEMG00000008599) Zfp330 (ENSPEMG00000022167) Il15 (ENSPEMG00000029894) Inpp4b (ENSPEMG00000005790) Usp38 (ENSPEMG00000017993) Gab1 (ENSPEMG00000011664) Smarca5 (ENSPEMG00000008060) Hhip (ENSPEMG00000020265) ENSPEMG00000027237 Anapc10 (ENSPEMG00000020210) ENSPEMG00000025681 Abce1 (ENSPEMG00000020086) Otud4 (ENSPEMG00000000203) Smad1 (ENSPEMG00000018411) Mmaa (ENSPEMG00000017778) Rodentia_A ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Naked mole-rat female MODERN SPECIES 23 SH3PXD2B (ENSHGLG00000009542) NEURL1B (ENSHGLG00000039883) DUSP1 (ENSHGLG00000012633) ERGIC1 (ENSHGLG00000050911) ENSHGLG00000017100 ENSHGLG00000018219 ENSHGLG00000021190 ENSHGLG00000017817 BNIP1 (ENSHGLG00000018031) NKX2-5 (ENSHGLG00000017269) STC2 (ENSHGLG00000017592) ENSHGLG00000041881 CPEB4 (ENSHGLG00000008897) C5orf47 (ENSHGLG00000040572) ENSHGLG00000049916 #22 ENSHGLG00000041184 ##22 NSG2 (ENSHGLG00000006062) MSX2 (ENSHGLG00000017569) ENSHGLG00000049074 ENSHGLG00000036934 DRD1 (ENSHGLG00000016781) SFXN1 (ENSHGLG00000045847) HRH2 (ENSHGLG00000018733) CPLX2 (ENSHGLG00000033963) THOC3 (ENSHGLG00000008773) ENSHGLG00000034727 ENSHGLG00000036140 ENSHGLG00000006385 ENSHGLG00000040734 ENSHGLG00000005591 ARL10 (ENSHGLG00000005509) Sciuridae ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Marmotini ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Marmotini_b ANCESTRAL SPECIES ENSGT00940000154415.z.b ##22 Arctic ground squirrel MODERN SPECIES 86 TDRD12 (ENSUPAG00010010237) #10 SLC7A9 (ENSUPAG00010010354) #11 CEP89 (ENSUPAG00010010410) #12 ENSUPAG00010010487 RHPN2 (ENSUPAG00010010489) #13 GPATCH1 (ENSUPAG00010010496) #14 ENSUPAG00010010526 ENSUPAG00010010532 LRP3 (ENSUPAG00010010534) #15 SLC7A10 (ENSUPAG00010010545) #16 ENSUPAG00010010556 #17 CEBPG (ENSUPAG00010010559) #18 PEPD (ENSUPAG00010010563) #19 CHST8 (ENSUPAG00010010581) #20 KCTD15 (ENSUPAG00010010589) #21 ENSUPAG00010010612 ##22 GARRE1 (ENSUPAG00010010624) #23 PDCD2L (ENSUPAG00010010733) #25 UBA2 (ENSUPAG00010010752) #26 WTIP (ENSUPAG00010010767) #27 ENSUPAG00010010772 ENSUPAG00010010775 #29 ENSUPAG00010010792 #30 ZNF599 (ENSUPAG00010010797) #31 ENSUPAG00010010805 ##31 ENSUPAG00010010825 ZNF792 (ENSUPAG00010010828) #32 GRAMD1A (ENSUPAG00010010831) #33 SCN1B (ENSUPAG00010010850) #34 HPN (ENSUPAG00010010859) #35 FXYD3 (ENSUPAG00010010875) #36