Mus	ANCESTRAL SPECIES		ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456	ENSGT00940000153837.a.b	ENSGT00390000007074	ENSGT00940000162291	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415.`b #22	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00390000009774.e #29	ENSGT00900000141269.i.a	ENSGT00940000161007	ENSGT00390000018560.a.b	ENSGT00940000159697	ENSGT00940000153062.A.a.a.a	ENSGT00940000162018	ENSGT00940000153062.C	ENSGT00940000153062.A.b.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456	ENSGT00940000153837.a.b	ENSGT00390000007074	ENSGT00940000162291	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415.`b #22	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00390000009774.e.c ##29	ENSGT00900000141269.i.a	ENSGT00900000141269.j.b.b	ENSGT00390000009774.f.a.a ##29	ENSGT00940000161007	ENSGT00390000018560.a.b	ENSGT00940000159697	ENSGT00940000153062.A.a.a.a	ENSGT00940000162018
Mus_B	ANCESTRAL SPECIES		ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456	ENSGT00940000153837.a.b	ENSGT00390000007074	ENSGT00940000162291	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415.`b #22	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00390000009774.e.d #29	ENSGT00390000009774.e.c.b ##29	ENSGT00900000141269.i.a	ENSGT00390000009774.e.c.a ##29	ENSGT00900000141269.i.b	ENSGT00390000009774.f.a.b ##29	ENSGT00900000141269.j.a.a	ENSGT00390000009774.f.b.a.a ##29	ENSGT00900000141269.j.b.a
Mus_C	ANCESTRAL SPECIES	32	ENSGT00420000029858	ENSGT00420000029847	ENSGT00940000156370	ENSGT00390000018876	ENSGT00390000009456	ENSGT00940000153837.a.b	ENSGT00390000007074	ENSGT00940000162291	ENSGT00940000160021	ENSGT00940000156469	ENSGT00940000162646	ENSGT00940000160676	ENSGT00940000153657.B	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415.`b #22	ENSGT00950000182901.a.a.b.b.a.b.a.b.a.b	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00390000009774.e.d #29	ENSGT00390000009774.e.c.b ##29	ENSGT00900000141269.i.a	ENSGT00390000009774.e.c.a ##29	ENSGT00900000141269.i.b	ENSGT00390000009774.f.a.b ##29	ENSGT00900000141269.j.a.a	ENSGT00900000141269.j.a.b.b.b	ENSGT00390000009774.f.b.a.b ##29
Steppe mouse	MODERN SPECIES	2649														Chst8 (ENSMSIG00000016709) #20	Kctd15 (ENSMSIG00000016721) #21	Lsm14a (ENSMSIG00000016741) #22	ENSMSIG00000016777 #23	Garre1 (ENSMSIG00000016800) #24	Gpi1 (ENSMSIG00000016861) #25	Pdcd2l (ENSMSIG00000016935) #26	Uba2 (ENSMSIG00000016950) #27	ENSMSIG00000016986 #28	Scgb1b30 (ENSMSIG00000017061) #29
spretus	MODERN SPECIES	16	Ankrd27 (MGP_SPRETEiJ_G0030689)	Rgs9bp (MGP_SPRETEiJ_G0030688)	Tdrd12 (MGP_SPRETEiJ_G0030686)	Slc7a9 (MGP_SPRETEiJ_G0030685)	Cep89 (MGP_SPRETEiJ_G0030684)	Faap24 (MGP_SPRETEiJ_G0030683)	Rhpn2 (MGP_SPRETEiJ_G0030682)	Gpatch1 (MGP_SPRETEiJ_G0030681)	Lrp3 (MGP_SPRETEiJ_G0030680)	Slc7a10 (MGP_SPRETEiJ_G0030679)	Cebpa (MGP_SPRETEiJ_G0030678)	Cebpg (MGP_SPRETEiJ_G0030677)	Pepd (MGP_SPRETEiJ_G0030676)	Chst8 (MGP_SPRETEiJ_G0030675) #20	Kctd15 (MGP_SPRETEiJ_G0030674) #21	Lsm14a (MGP_SPRETEiJ_G0030673) #22	MGP_SPRETEiJ_G0030672	Garre1 (MGP_SPRETEiJ_G0030671) #24	Gpi1 (MGP_SPRETEiJ_G0030670) #25	Pdcd2l (MGP_SPRETEiJ_G0030669) #26	Uba2 (MGP_SPRETEiJ_G0030668) #27	Wtip (MGP_SPRETEiJ_G0030667) #28	Scgb1b27 (MGP_SPRETEiJ_G0030666) ##29	Scgb2b27 (MGP_SPRETEiJ_G0030665)	MGP_SPRETEiJ_G0030664 ##29	Scgb2b26 (MGP_SPRETEiJ_G0030663)	Scgb1b24 (MGP_SPRETEiJ_G0030662) ##29	Scgb2b24 (MGP_SPRETEiJ_G0030661)	Scgb1b2 (MGP_SPRETEiJ_G0030660) ##29	Gramd1a (MGP_SPRETEiJ_G0030659)	Scn1b (MGP_SPRETEiJ_G0030658)
Mouse	MODERN SPECIES	16	Nudt19 (ENSMUSG00000034875)	Tdrd12 (ENSMUSG00000030491)	Slc7a9 (ENSMUSG00000030492)	Cep89 (ENSMUSG00000023072)	Faap24 (ENSMUSG00000030493)	Rhpn2 (ENSMUSG00000030494)	Gpatch1 (ENSMUSG00000063808)	Wdr88 (ENSMUSG00000118454)	Lrp3 (ENSMUSG00000001802)	Slc7a10 (ENSMUSG00000030495)	Cebpa (ENSMUSG00000034957)	Cebpg (ENSMUSG00000056216)	Pepd (ENSMUSG00000063931)	Chst8 (ENSMUSG00000060402) #20	Kctd15 (ENSMUSG00000030499) #21	Lsm14a (ENSMUSG00000066568) #22	Garre1 (ENSMUSG00000066571) #24	Gpi1 (ENSMUSG00000036427) #25	Pdcd2l (ENSMUSG00000002635) #26	Uba2 (ENSMUSG00000052997) #27	Wtip (ENSMUSG00000036459) #28	Scgb1b30 (ENSMUSG00000078752) #29	Scgb1b27 (ENSMUSG00000066583) ##29	Scgb2b27 (ENSMUSG00000066584)	Scgb2b26 (ENSMUSG00000066586)	Scgb1b24 (ENSMUSG00000078753) ##29	Scgb2b24 (ENSMUSG00000046438)	Scgb2b21 (ENSMUSG00000099900)	Scgb1b20 (ENSMUSG00000094978) ##29	Scgb2b20 (ENSMUSG00000094305)	Scgb1b19 (ENSMUSG00000095232) ##29
Ryukyu mouse	MODERN SPECIES	16	Rgs9bp (MGP_CAROLIEiJ_G0029589)	Nudt19 (MGP_CAROLIEiJ_G0029588)	Tdrd12 (MGP_CAROLIEiJ_G0029587)	Slc7a9 (MGP_CAROLIEiJ_G0029586)	Cep89 (MGP_CAROLIEiJ_G0029585)	Faap24 (MGP_CAROLIEiJ_G0029584)	Rhpn2 (MGP_CAROLIEiJ_G0029583)	Gpatch1 (MGP_CAROLIEiJ_G0029582)	Lrp3 (MGP_CAROLIEiJ_G0029581)	Slc7a10 (MGP_CAROLIEiJ_G0029580)	Cebpa (MGP_CAROLIEiJ_G0029579)	Cebpg (MGP_CAROLIEiJ_G0029578)	Pepd (MGP_CAROLIEiJ_G0029577)	Chst8 (MGP_CAROLIEiJ_G0029576) #20	Kctd15 (MGP_CAROLIEiJ_G0029575) #21	Lsm14a (MGP_CAROLIEiJ_G0029574) #22	MGP_CAROLIEiJ_G0029573	Garre1 (MGP_CAROLIEiJ_G0029572) #24	Gpi1 (MGP_CAROLIEiJ_G0029571) #25	Pdcd2l (MGP_CAROLIEiJ_G0029570) #26	Uba2 (MGP_CAROLIEiJ_G0029569) #27	Wtip (MGP_CAROLIEiJ_G0029568) #28	Scgb1b30 (MGP_CAROLIEiJ_G0029567) #29	MGP_CAROLIEiJ_G0029566	MGP_CAROLIEiJ_G0029565	Scgb1b2 (MGP_CAROLIEiJ_G0029564) ##29	Gramd1a (MGP_CAROLIEiJ_G0029563)	Scn1b (MGP_CAROLIEiJ_G0029562)	Hpn (MGP_CAROLIEiJ_G0029561)	Fxyd3 (MGP_CAROLIEiJ_G0029560)	Lgi4 (MGP_CAROLIEiJ_G0029559)
Shrew mouse	MODERN SPECIES		Rgs9bp (MGP_PahariEiJ_G0012823)	Nudt19 (MGP_PahariEiJ_G0012822)	Tdrd12 (MGP_PahariEiJ_G0012821)	Slc7a9 (MGP_PahariEiJ_G0012820)	Cep89 (MGP_PahariEiJ_G0012819)	Faap24 (MGP_PahariEiJ_G0012818)	Rhpn2 (MGP_PahariEiJ_G0012817)	Gpatch1 (MGP_PahariEiJ_G0012816)	Lrp3 (MGP_PahariEiJ_G0012815)	Slc7a10 (MGP_PahariEiJ_G0012814)	Cebpa (MGP_PahariEiJ_G0012813)	Cebpg (MGP_PahariEiJ_G0012812)	Pepd (MGP_PahariEiJ_G0012811)	Chst8 (MGP_PahariEiJ_G0012810) #20	Kctd15 (MGP_PahariEiJ_G0012809) #21	MGP_PahariEiJ_G0012808 #22	Garre1 (MGP_PahariEiJ_G0012807) #24	Gpi1 (MGP_PahariEiJ_G0012806) #25	Pdcd2l (MGP_PahariEiJ_G0012805) #26	Uba2 (MGP_PahariEiJ_G0012804) #27	Wtip (MGP_PahariEiJ_G0012803) #28	MGP_PahariEiJ_G0012802 #29	MGP_PahariEiJ_G0012801 #29	MGP_PahariEiJ_G0012800	MGP_PahariEiJ_G0012799	MGP_PahariEiJ_G0012798 ##29	MGP_PahariEiJ_G0012797 ##29	Scgb2b3 (MGP_PahariEiJ_G0012796)	Gramd1a (MGP_PahariEiJ_G0012795)	Scn1b (MGP_PahariEiJ_G0012794)	Hpn (MGP_PahariEiJ_G0012793)