Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774	ENSGT00900000141269	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36
Cetacea	ANCESTRAL SPECIES	6	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00940000153997.b.a.b.h	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00940000153997.b.a.b.h	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36	ENSGT00940000162018 #37
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36	ENSGT00940000162018 #37	ENSGT00940000153062.C ##36
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36	ENSGT00940000162018 #37	ENSGT00940000153062.C ##36
Vaquita	MODERN SPECIES	10	TDRD12 (ENSPSNG00000020182) #7	SLC7A9 (ENSPSNG00000020070) #8	ENSPSNG00000020046 #9	CEP89 (ENSPSNG00000019994) #10	FAAP24 (ENSPSNG00000019954) #11	RHPN2 (ENSPSNG00000019928) #12	GPATCH1 (ENSPSNG00000019894) #13	WDR88 (ENSPSNG00000019754) #14	LRP3 (ENSPSNG00000019712) #15	SLC7A10 (ENSPSNG00000019639) #16	CEBPA (ENSPSNG00000019621) #17	CEBPG (ENSPSNG00000019601) #18	PEPD (ENSPSNG00000019536) #19	CHST8 (ENSPSNG00000019495) #20	KCTD15 (ENSPSNG00000019455) #21	LSM14A (ENSPSNG00000019322) #22	GARRE1 (ENSPSNG00000019202) #23	GPI (ENSPSNG00000018917) #24	PDCD2L (ENSPSNG00000018857) #25	UBA2 (ENSPSNG00000018804) #26	WTIP (ENSPSNG00000018772) #27	ENSPSNG00000018747 #28	ENSPSNG00000018702 #29	ZNF599 (ENSPSNG00000018646) #30	ENSPSNG00000018603 #31	ZNF792 (ENSPSNG00000018552) #32	GRAMD1A (ENSPSNG00000018279) #33	SCN1B (ENSPSNG00000018171) #34	HPN (ENSPSNG00000018059) #35	FXYD3 (ENSPSNG00000017932) #36	LGI4 (ENSPSNG00000017852) #37
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00940000164353 #31	ENSGT00940000162928 #32	ENSGT00940000161007 #33	ENSGT00390000018560.a.b #34	ENSGT00940000159697 #35	ENSGT00940000153062.A.a.a.a #36	ENSGT00940000162018 #37	ENSGT00940000153062.C ##36
Narwhal	MODERN SPECIES	296	SLC7A9 (ENSMMNG00015001863) #8	ENSMMNG00015001894	CEP89 (ENSMMNG00015001947) #10	ENSMMNG00015002056 #9	FAAP24 (ENSMMNG00015002077) #11	RHPN2 (ENSMMNG00015002110) #12	GPATCH1 (ENSMMNG00015002182) #13	WDR88 (ENSMMNG00015002263) #14	LRP3 (ENSMMNG00015002346) #15	SLC7A10 (ENSMMNG00015002412) #16	CEBPA (ENSMMNG00015002491) #17	CEBPG (ENSMMNG00015002501) #18	PEPD (ENSMMNG00015002556) #19	CHST8 (ENSMMNG00015002618) #20	KCTD15 (ENSMMNG00015002648) #21	LSM14A (ENSMMNG00015002709) #22	GARRE1 (ENSMMNG00015002783) #23	GPI (ENSMMNG00015002821) #24	PDCD2L (ENSMMNG00015002881) #25	UBA2 (ENSMMNG00015002907) #26	WTIP (ENSMMNG00015003047) #27	ENSMMNG00015003104 #29	ZNF599 (ENSMMNG00015003127) #30	ENSMMNG00015003143 #31	ZNF792 (ENSMMNG00015003174) #32	GRAMD1A (ENSMMNG00015003255) #33	SCN1B (ENSMMNG00015003340) #34	HPN (ENSMMNG00015003403) #35	FXYD3 (ENSMMNG00015003472) #36	LGI4 (ENSMMNG00015003585) #37	FXYD1 (ENSMMNG00015003614) ##36
Beluga whale	MODERN SPECIES	14	ENSDLEG00000001110	SLC7A9 (ENSDLEG00000001083) #8	ENSDLEG00000001076 #9	CEP89 (ENSDLEG00000001045) #10	FAAP24 (ENSDLEG00000001028) #11	RHPN2 (ENSDLEG00000000997) #12	GPATCH1 (ENSDLEG00000000964) #13	ENSDLEG00000000950 #14	LRP3 (ENSDLEG00000000916) #15	SLC7A10 (ENSDLEG00000000869) #16	CEBPA (ENSDLEG00000000849) #17	CEBPG (ENSDLEG00000000840) #18	PEPD (ENSDLEG00000000825) #19	CHST8 (ENSDLEG00000000815) #20	KCTD15 (ENSDLEG00000000790) #21	LSM14A (ENSDLEG00000000703) #22	KIAA0355 (ENSDLEG00000000627) #23	GPI (ENSDLEG00000000552) #24	PDCD2L (ENSDLEG00000000532) #25	UBA2 (ENSDLEG00000000485) #26	WTIP (ENSDLEG00000000436) #27	ENSDLEG00000000415	ENSDLEG00000000364 #29	ZNF599 (ENSDLEG00000000306) #30	ZNF792 (ENSDLEG00000000284) #32	GRAMD1A (ENSDLEG00000000229) #33	SCN1B (ENSDLEG00000000146) #34	HPN (ENSDLEG00000000101) #35	FXYD3 (ENSDLEG00000000061) #36	LGI4 (ENSDLEG00000003187) #37	ENSDLEG00000003169 ##36
Dolphin	MODERN SPECIES	3257																LSM14A (ENSTTRG00000012875) #22	GARRE1 (ENSTTRG00000012891) #23	GPI (ENSTTRG00000012903) #24	PDCD2L (ENSTTRG00000012915) #25	UBA2 (ENSTTRG00000012917) #26	ENSTTRG00000012922 #27
Sperm whale	MODERN SPECIES	8	SLC7A9 (ENSPCTG00005015420) #8	CEP89 (ENSPCTG00005015339) #10	FAAP24 (ENSPCTG00005015251) #11	ENSPCTG00005015197	RHPN2 (ENSPCTG00005014981) #12	GPATCH1 (ENSPCTG00005014911) #13	WDR88 (ENSPCTG00005014581) #14	LRP3 (ENSPCTG00005014474) #15	SLC7A10 (ENSPCTG00005014353) #16	CEBPA (ENSPCTG00005014331) #17	CEBPG (ENSPCTG00005014307) #18	PEPD (ENSPCTG00005014153) #19	CHST8 (ENSPCTG00005014071) #20	KCTD15 (ENSPCTG00005013999) #21	ENSPCTG00005013917	LSM14A (ENSPCTG00005013769) #22	ENSPCTG00005013668	KIAA0355 (ENSPCTG00005013477) #23	GPI (ENSPCTG00005013183) #24	PDCD2L (ENSPCTG00005013093) #25	UBA2 (ENSPCTG00005012969) #26	WTIP (ENSPCTG00005012867) #27	ENSPCTG00005012698 #29	ZNF599 (ENSPCTG00005012568) #30	ZNF792 (ENSPCTG00005012349) #32	NOVA2 (ENSPCTG00005012295)	HIF3A (ENSPCTG00005011738)	CCDC8 (ENSPCTG00005011665)	ENSPCTG00005011609	STRN4 (ENSPCTG00005011583)	ARHGAP35 (ENSPCTG00005011530)
Blue whale	MODERN SPECIES	10	ENSBMSG00010017925	SLC7A9 (ENSBMSG00010017871) #8	CEP89 (ENSBMSG00010017830) #10	FAAP24 (ENSBMSG00010017784) #11	RHPN2 (ENSBMSG00010017698) #12	GPATCH1 (ENSBMSG00010017658) #13	WDR88 (ENSBMSG00010017527) #14	LRP3 (ENSBMSG00010017500) #15	SLC7A10 (ENSBMSG00010017456) #16	CEBPA (ENSBMSG00010017438) #17	CEBPG (ENSBMSG00010017424) #18	PEPD (ENSBMSG00010017360) #19	CHST8 (ENSBMSG00010017297) #20	KCTD15 (ENSBMSG00010017250) #21	ENSBMSG00010017224	LSM14A (ENSBMSG00010017133) #22	ENSBMSG00010017069	GARRE1 (ENSBMSG00010016980) #23	GPI (ENSBMSG00010016879) #24	PDCD2L (ENSBMSG00010016845) #25	UBA2 (ENSBMSG00010016801) #26	WTIP (ENSBMSG00010016752) #27	ENSBMSG00010016710	ENSBMSG00010016681 #29	ZNF599 (ENSBMSG00010016641) #30	ENSBMSG00010016620 #31	ZNF792 (ENSBMSG00010016578) #32	GRAMD1A (ENSBMSG00010016467) #33	SCN1B (ENSBMSG00010016409) #34	HPN (ENSBMSG00010016282) #35	ENSBMSG00010016213
Pecora	ANCESTRAL SPECIES	4	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.a	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.a.b	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00390000009774.b.b.b.a.a.b	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.b.a
Percora_a	ANCESTRAL SPECIES	4	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.b.a.a.b	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.b.a.a.a	ENSGT00900000141269.c.a.a.b	ENSGT00390000009774.b.a
Bovidae	ANCESTRAL SPECIES	4	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.b.a.a.b	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.b.a.a.a	ENSGT00900000141269.c.a.a.b	ENSGT00390000009774.b.a
Bovinae	ANCESTRAL SPECIES	3	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.b.a.a.b.a	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.a.b	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00390000009774.b.b.b.a.a.b.b	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.b.a.a.a
Bos	ANCESTRAL SPECIES	4	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.b.a.a.b.a	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.a.b	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.b.a.a.a	ENSGT00900000141269.c.a.a.b
Bos_a	ANCESTRAL SPECIES	1	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000154509.y.b.a.a.b	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00900000141269.c.b.a	ENSGT00390000009774.a	ENSGT00390000009774.b.a	ENSGT00900000141269.c.a.a.a	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00980000199360	ENSGT00950000182858.A.a.b	ENSGT00940000162928 #32	ENSGT00940000162930
Domestic yak	MODERN SPECIES	12	SLC7A9 (ENSBGRG00000014100) #8	CEP89 (ENSBGRG00000013711) #10	FAAP24 (ENSBGRG00000013456) #11	ENSBGRG00000013384	RHPN2 (ENSBGRG00000013257) #12	GPATCH1 (ENSBGRG00000012937) #13	WDR88 (ENSBGRG00000012742) #14	LRP3 (ENSBGRG00000012595) #15	SLC7A10 (ENSBGRG00000012434) #16	ENSBGRG00000012424	ENSBGRG00000012376 #17	CEBPG (ENSBGRG00000012352) #18	PEPD (ENSBGRG00000011874) #19	CHST8 (ENSBGRG00000011805) #20	KCTD15 (ENSBGRG00000011698) #21	LSM14A (ENSBGRG00000011045) #22	GARRE1 (ENSBGRG00000010861) #23	GPI (ENSBGRG00000022167) #24	PDCD2L (ENSBGRG00000022086) #25	ENSBGRG00000022026 #26	WTIP (ENSBGRG00000021906) #27	ENSBGRG00000021883	ENSBGRG00000021783	ENSBGRG00000021728	ENSBGRG00000021684	ENSBGRG00000021636	ENSBGRG00000021609	ENSBGRG00000021563	ENSBGRG00000021528	ENSBGRG00000021504
Wild yak	MODERN SPECIES	2146																LSM14A (ENSBMUG00000000362) #22	GARRE1 (ENSBMUG00000022721) #23	GPI (ENSBMUG00000022708) #24	PDCD2L (ENSBMUG00000022690) #25	UBA2 (ENSBMUG00000022678) #26	WTIP (ENSBMUG00000022655) #27	ENSBMUG00000022649	ENSBMUG00000022632	ENSBMUG00000022620	ENSBMUG00000022611
Bos_b	ANCESTRAL SPECIES		ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00940000154509.y.b.a.a.b	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.b.a.a.b.a	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.a.b	ENSGT00390000009774.b.b.b.b.b	ENSGT00900000141269.d	ENSGT00900000141269.c.b.b.b	ENSGT00390000009774.b.b.b.a.a.a.a.a	ENSGT00900000141269.c.b.b.a	ENSGT00390000009774.b.b.b.a.a.a.a.b	ENSGT00900000141269.c.a.a.b
Cow	MODERN SPECIES	9	NUDT19 (ENSBTAG00000023614)	ENSBTAG00000049809	TDRD12 (ENSBTAG00000019266) #7	SLC7A9 (ENSBTAG00000013338) #8	CEP89 (ENSBTAG00000004864) #10	FAAP24 (ENSBTAG00000010403) #11	RHPN2 (ENSBTAG00000003089) #12	ENSBTAG00000049582	GPATCH1 (ENSBTAG00000000721) #13	WDR88 (ENSBTAG00000031810) #14	LRP3 (ENSBTAG00000047062) #15	SLC7A10 (ENSBTAG00000046544) #16	PEPD (ENSBTAG00000031941) #19	CHST8 (ENSBTAG00000047670) #20	KCTD15 (ENSBTAG00000017956) #21	LSM14A (ENSBTAG00000000630) #22	GARRE1 (ENSBTAG00000013175) #23	GPI (ENSBTAG00000006396) #24	PDCD2L (ENSBTAG00000002571) #25	UBA2 (ENSBTAG00000002573) #26	WTIP (ENSBTAG00000007841) #27	ENSBTAG00000049041	ENSBTAG00000050865	ENSBTAG00000050987	ENSBTAG00000050882	ENSBTAG00000051319	ENSBTAG00000045737	ENSBTAG00000052946	ENSBTAG00000047571	ENSBTAG00000047724	ENSBTAG00000052142
Hybrid Bos Indicus	MODERN SPECIES	9	TDRD12 (ENSBIXG00005028317) #7	SLC7A9 (ENSBIXG00005004880) #8	CEP89 (ENSBIXG00005028440) #10	FAAP24 (ENSBIXG00005002469) #11	ENSBIXG00005028497	RHPN2 (ENSBIXG00005004919) #12	GPATCH1 (ENSBIXG00005028563) #13	WDR88 (ENSBIXG00005028616) #14	LRP3 (ENSBIXG00005004954) #15	SLC7A10 (ENSBIXG00005028713) #16	CEBPA (ENSBIXG00005028726) #17	CEBPG (ENSBIXG00005028763) #18	PEPD (ENSBIXG00005005052) #19	CHST8 (ENSBIXG00005002179) #20	KCTD15 (ENSBIXG00005002102) #21	LSM14A (ENSBIXG00005001998) #22	GARRE1 (ENSBIXG00005001883) #23	GPI (ENSBIXG00005029128) #24	PDCD2L (ENSBIXG00005029138) #25	UBA2 (ENSBIXG00005001815) #26	WTIP (ENSBIXG00005029189) #27	ENSBIXG00005001583	ENSBIXG00005029292	ENSBIXG00005029283	ENSBIXG00005029273	ENSBIXG00005007859	ENSBIXG00005007863	ENSBIXG00005007872	ENSBIXG00005007883	ENSBIXG00005007887 ##28	ENSBIXG00005000024 #29
American bison	MODERN SPECIES	3196	ENSBBBG00000010478	ENSBBBG00000010472	SLC7A9 (ENSBBBG00000010461) #8	CEP89 (ENSBBBG00000007585) #10	FAAP24 (ENSBBBG00000010419) #11	RHPN2 (ENSBBBG00000010413) #12	ENSBBBG00000010409	GPATCH1 (ENSBBBG00000010401) #13	WDR88 (ENSBBBG00000007393) #14	LRP3 (ENSBBBG00000010366) #15	SLC7A10 (ENSBBBG00000010361) #16	CEBPG (ENSBBBG00000025507) #18	PEPD (ENSBBBG00000025444) #19	CHST8 (ENSBBBG00000008256) #20	KCTD15 (ENSBBBG00000025236) #21	LSM14A (ENSBBBG00000025168) #22	GARRE1 (ENSBBBG00000025060) #23	GPI (ENSBBBG00000007742) #24	PDCD2L (ENSBBBG00000006587) #25	ENSBBBG00000008057	UBA2 (ENSBBBG00000024928) #26	ENSBBBG00000008227 #27	ENSBBBG00000024846	ENSBBBG00000006815	ENSBBBG00000024791	ENSBBBG00000024777	ENSBBBG00000024762	ENSBBBG00000006502	ENSBBBG00000007812	ENSBBBG00000006491	ENSBBBG00000000162 #29
Caprinae	ANCESTRAL SPECIES	4	ENSGT00420000029858	ENSGT00420000029847 #7	ENSGT00940000156370 #8	ENSGT00390000018876 #10	ENSGT00390000009456 #11	ENSGT00940000153837.a.b #12	ENSGT00390000007074 #13	ENSGT00940000162291 #14	ENSGT00940000160021 #15	ENSGT00940000156469 #16	ENSGT00940000162646 #17	ENSGT00940000160676 #18	ENSGT00940000153657.B #19	ENSGT00940000159100 #20	ENSGT00940000159496 #21	ENSGT00940000154415 #22	ENSGT00940000154550.a.e.a.a.a.a	ENSGT00390000003210 #23	ENSGT00390000000707 #24	ENSGT00940000158339 #25	ENSGT00550000074924 #26	ENSGT00940000160924 #27	ENSGT00390000009774.b.b.a.b	ENSGT00900000141269.c.b.a	ENSGT00390000009774.b.b.b.b.a.a.b	ENSGT00940000161431 #29	ENSGT00940000159953.C #30	ENSGT00980000199360	ENSGT00950000182858.A.a.b	ENSGT00940000162928 #32	ENSGT00940000161007 #33
Rambouillet Sheep	MODERN SPECIES	5	NUDT19 (ENSOARG00020018292)	TDRD12 (ENSOARG00020010036) #7	SLC7A9 (ENSOARG00020010886) #8	CEP89 (ENSOARG00020010986) #10	FAAP24 (ENSOARG00020011075) #11	RHPN2 (ENSOARG00020011137) #12	GPATCH1 (ENSOARG00020011298) #13	ENSOARG00020011383 #14	LRP3 (ENSOARG00020011439) #15	SLC7A10 (ENSOARG00020011600) #16	CEBPA (ENSOARG00020011732) #17	CEBPG (ENSOARG00020011763) #18	PEPD (ENSOARG00020011799) #19	CHST8 (ENSOARG00020011976) #20	ENSOARG00020012005 #21	LSM14A (ENSOARG00020012188) #22	ENSOARG00020012563	GARRE1 (ENSOARG00020012589) #23	GPI (ENSOARG00020012688) #24	PDCD2L (ENSOARG00020012872) #25	UBA2 (ENSOARG00020012991) #26	WTIP (ENSOARG00020013317) #27	ENSOARG00020013478	ENSOARG00020013551	ENSOARG00020013647	ENSOARG00020013716	ENSOARG00020013766	ENSOARG00020013836	ENSOARG00020013900	ENSOARG00020013969	ENSOARG00020014025
Goat	MODERN SPECIES	9	ANKRD27 (ENSCHIG00000017376)	RGS9BP (ENSCHIG00000007331)	NUDT19 (ENSCHIG00000021537)	CEP89 (ENSCHIG00000014142) #10	FAAP24 (ENSCHIG00000021119) #11	RHPN2 (ENSCHIG00000010158) #12	ENSCHIG00000023853	GPATCH1 (ENSCHIG00000019626) #13	LRP3 (ENSCHIG00000012481) #15	SLC7A10 (ENSCHIG00000023717) #16	CEBPA (ENSCHIG00000011587) #17	CEBPG (ENSCHIG00000008784) #18	PEPD (ENSCHIG00000015514) #19	CHST8 (ENSCHIG00000019583) #20	KCTD15 (ENSCHIG00000023579) #21	LSM14A (ENSCHIG00000009458) #22	ENSCHIG00000008709	GARRE1 (ENSCHIG00000007746) #23	GPI (ENSCHIG00000016122) #24	PDCD2L (ENSCHIG00000024774) #25	UBA2 (ENSCHIG00000014051) #26	WTIP (ENSCHIG00000025695) #27	ENSCHIG00000011644	ENSCHIG00000022635	ENSCHIG00000013055	ENSCHIG00000024732	ENSCHIG00000009298	ENSCHIG00000021338	ENSCHIG00000014055 #29	ZNF599 (ENSCHIG00000025528) #30	ENSCHIG00000013449
Siberian musk deer	MODERN SPECIES	125	TDRD12 (ENSMMSG00000001219) #7	SLC7A9 (ENSMMSG00000001076) #8	CEP89 (ENSMMSG00000001009) #10	FAAP24 (ENSMMSG00000000974) #11	ENSMMSG00000000960	RHPN2 (ENSMMSG00000000908) #12	GPATCH1 (ENSMMSG00000000877) #13	WDR88 (ENSMMSG00000000832) #14	LRP3 (ENSMMSG00000000798) #15	SLC7A10 (ENSMMSG00000000765) #16	CEBPA (ENSMMSG00000000749) #17	CEBPG (ENSMMSG00000000734) #18	PEPD (ENSMMSG00000000671) #19	CHST8 (ENSMMSG00000000640) #20	KCTD15 (ENSMMSG00000000610) #21	LSM14A (ENSMMSG00000000531) #22	ENSMMSG00000000453 #23	GPI (ENSMMSG00000000382) #24	PDCD2L (ENSMMSG00000000346) #25	UBA2 (ENSMMSG00000000281) #26	ENSMMSG00000000225 #27	ENSMMSG00000000209	ENSMMSG00000000199	ENSMMSG00000000187	ENSMMSG00000000175	ENSMMSG00000003766
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	10	COLQ (ENSCHYG00000011149)	HACL1 (ENSCHYG00000011632)	ENSCHYG00000014376	BTD (ENSCHYG00000014404)	ANKRD28 (ENSCHYG00000014677)	GALNT15 (ENSCHYG00000016130)	DPH3 (ENSCHYG00000016462)	OXNAD1 (ENSCHYG00000016543)	RFTN1 (ENSCHYG00000016683)	ENSCHYG00000017075	PLCL2 (ENSCHYG00000017252)	TBC1D5 (ENSCHYG00000017550)	SATB1 (ENSCHYG00000017752)	ENSCHYG00000017861	KCNH8 (ENSCHYG00000017889)	ENSCHYG00000017953 #22	EFHB (ENSCHYG00000017996)	RAB5A (ENSCHYG00000018319)	PP2D1 (ENSCHYG00000018405)	KAT2B (ENSCHYG00000018554)	SGO1 (ENSCHYG00000021407)	ENSCHYG00000021440	ZNF596 (ENSCHYG00000021476)	ENSCHYG00000021566	ATG3 (ENSCHYG00000021648)	SLC35A5 (ENSCHYG00000021840)	CCDC80 (ENSCHYG00000021936)	ENSCHYG00000022314	GTPBP8 (ENSCHYG00000022401)	NEPRO (ENSCHYG00000022540)	ENSCHYG00000022701
Yarkand deer	MODERN SPECIES	28	SDS (ENSCHYG00000000646)	SDSL (ENSCHYG00000000665)	LHX5 (ENSCHYG00000000682)	ENSCHYG00000000696	RBM19 (ENSCHYG00000000734)	TBX5 (ENSCHYG00000000797)	TBX3 (ENSCHYG00000000836)	ENSCHYG00000000868	MED13L (ENSCHYG00000000917)	ENSCHYG00000001041	ENSCHYG00000001079	ENSCHYG00000001144	ENSCHYG00000001301	HRK (ENSCHYG00000001314)	TESC (ENSCHYG00000001343)	ENSCHYG00000001393 #22	FBXO21 (ENSCHYG00000001435)	NOS1 (ENSCHYG00000001525)	KSR2 (ENSCHYG00000001636)	ENSCHYG00000001686	WSB2 (ENSCHYG00000001732)	ENSCHYG00000001776	ENSCHYG00000001803	TAOK3 (ENSCHYG00000001860)	ENSCHYG00000001934	SRRM4 (ENSCHYG00000001953)	HSPB8 (ENSCHYG00000001963)	CCDC60 (ENSCHYG00000002012)	ENSCHYG00000002119	TMEM233 (ENSCHYG00000002138)	PRKAB1 (ENSCHYG00000002156)
Yarkand deer	MODERN SPECIES	27	NUDT19 (ENSCHYG00000007216)	TDRD12 (ENSCHYG00000007254) #7	SLC7A9 (ENSCHYG00000007447) #8	CEP89 (ENSCHYG00000007507) #10	FAAP24 (ENSCHYG00000007619) #11	RHPN2 (ENSCHYG00000007660) #12	GPATCH1 (ENSCHYG00000007727) #13	ENSCHYG00000007774 #14	LRP3 (ENSCHYG00000007799) #15	SLC7A10 (ENSCHYG00000007871) #16	CEBPA (ENSCHYG00000007953) #17	CEBPG (ENSCHYG00000007966) #18	PEPD (ENSCHYG00000008012) #19	CHST8 (ENSCHYG00000008167) #20	KCTD15 (ENSCHYG00000008196) #21	LSM14A (ENSCHYG00000008291) #22	GARRE1 (ENSCHYG00000008545) #23	GPI (ENSCHYG00000008603) #24	PDCD2L (ENSCHYG00000008656) #25	ENSCHYG00000008732 #26	WTIP (ENSCHYG00000009038) #27	ENSCHYG00000009182	ENSCHYG00000009241	ENSCHYG00000009305	ENSCHYG00000009345	ENSCHYG00000009417	ENSCHYG00000009446	ENSCHYG00000009500	ENSCHYG00000009548	ENSCHYG00000009601	ENSCHYG00000009635