Amniota	ANCESTRAL SPECIES		ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT01050000245294	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a
Mammalia	ANCESTRAL SPECIES		ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Theria	ANCESTRAL SPECIES	1	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Eutheria	DUPLICATION
Eutheria	DUPLICATION
Eutheria	ANCESTRAL SPECIES	26	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Glires	ANCESTRAL SPECIES	10	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Rodentia_B	ANCESTRAL SPECIES	31	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Muroidea	ANCESTRAL SPECIES	30	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Murinae	ANCESTRAL SPECIES	33	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231	ENSGT00940000153460.c.a
Rat	DUPLICATION
Rat	MODERN SPECIES	46	Dynlt3 (ENSRNOG00000003611) #7	Sytl5 (ENSRNOG00000003585) #8	Rpgr (ENSRNOG00000003013) #9	Otc (ENSRNOG00000003370) #10	RGD1561661 (ENSRNOG00000023094) #11	Tspan7 (ENSRNOG00000003229) #12	Mid1ip1 (ENSRNOG00000003228) #13	AABR07037073.1 (ENSRNOG00000003227) #14	Bcor (ENSRNOG00000034240) #15	ENSRNOG00000064902 #16	Atp6ap2 (ENSRNOG00000003858) #17	AABR07037058.1 (ENSRNOG00000023163) #18	RGD1565685 (ENSRNOG00000023187) #19	Med14 (ENSRNOG00000003792) #20	Usp9x (ENSRNOG00000003261) #21	Ddx3x (ENSRNOG00000023383) #22	Nyx (ENSRNOG00000009646) #23	Gpr34 (ENSRNOG00000039759) #24	Gpr82 (ENSRNOG00000039762) #25	Cask (ENSRNOG00000060946) #26	AABR07036974.1 (ENSRNOG00000030819) #27	Ppp1r2-ps1 (ENSRNOG00000069720) #28	RGD1562289 (ENSRNOG00000068449) #29	Maoa (ENSRNOG00000002848) #30	Maob (ENSRNOG00000029778) #31	Ndp (ENSRNOG00000002960) #32	ENSRNOG00000070880 #33	LOC103690794 (ENSRNOG00000024053) #34	Efhc2 (ENSRNOG00000002986) #35	Fundc1 (ENSRNOG00000003470) #36	ENSRNOG00000070430 #37
Rat	MODERN SPECIES	4	LOC100912365 (ENSRNOG00000004066)	Dusp10 (ENSRNOG00000004003)	Hlx (ENSRNOG00000002309)	Mtarc1 (ENSRNOG00000037850)	RGD1310587 (ENSRNOG00000002322)	Mark1 (ENSRNOG00000002339)	LOC120096209 (ENSRNOG00000023547)	Rab3gap2 (ENSRNOG00000002353)	Iars2 (ENSRNOG00000002368)	Bpnt1 (ENSRNOG00000002378)	Eprs1 (ENSRNOG00000002393)	Slc30a10 (ENSRNOG00000002397)	Lyplal1 (ENSRNOG00000023130)	Tgfb2 (ENSRNOG00000002418)	Rrp15 (ENSRNOG00000002450)	Ddx3y (ENSRNOG00000002501) ##22	Spata17 (ENSRNOG00000002504)	Gpatch2 (ENSRNOG00000002512)	Esrrg (ENSRNOG00000002593)	Ush2a (ENSRNOG00000003738)	Kctd3 (ENSRNOG00000002627)	LOC100361993 (ENSRNOG00000022144)	Kcnk2 (ENSRNOG00000002653)	Cenpf (ENSRNOG00000003388)	Ptpn14 (ENSRNOG00000003407)	Smyd2 (ENSRNOG00000003583)	LOC498308 (ENSRNOG00000032812)	Prox1 (ENSRNOG00000003694)	Rps6kc1 (ENSRNOG00000003767)	LOC678708 (ENSRNOG00000071166)	Angel2 (ENSRNOG00000003795)
Mus	ANCESTRAL SPECIES	9	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00950000183845	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a	ENSGT00940000158262
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00950000183845	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000162492.g.b	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00390000016779.b.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	19	Dynlt3 (MGP_CAROLIEiJ_G0032926) #7	H2ap (MGP_CAROLIEiJ_G0032927)	MGP_CAROLIEiJ_G0032928	Sytl5 (MGP_CAROLIEiJ_G0032929) #8	Srpx (MGP_CAROLIEiJ_G0032930)	Rpgr (MGP_CAROLIEiJ_G0032931) #9	Otc (MGP_CAROLIEiJ_G0032932) #10	Tspan7 (MGP_CAROLIEiJ_G0032933) #12	Mid1ip1 (MGP_CAROLIEiJ_G0032934) #13	MGP_CAROLIEiJ_G0032935	Bcor (MGP_CAROLIEiJ_G0032936) #15	Atp6ap2 (MGP_CAROLIEiJ_G0032937) #17	1810030O07Rik (MGP_CAROLIEiJ_G0032938) #19	Med14 (MGP_CAROLIEiJ_G0032939) #20	MGP_CAROLIEiJ_G0032940	Ddx3x (MGP_CAROLIEiJ_G0032941) #22	Nyx (MGP_CAROLIEiJ_G0032942) #23	Cask (MGP_CAROLIEiJ_G0032943) #26	Gpr34 (MGP_CAROLIEiJ_G0032944) #24	Gpr82 (MGP_CAROLIEiJ_G0032945) #25	MGP_CAROLIEiJ_G0032946	Cypt1 (MGP_CAROLIEiJ_G0032947)	MGP_CAROLIEiJ_G0032948	Maoa (MGP_CAROLIEiJ_G0032949) #30	Maob (MGP_CAROLIEiJ_G0032950) #31	Ndp (MGP_CAROLIEiJ_G0032951) #32	Efhc2 (MGP_CAROLIEiJ_G0032952) #35	Fundc1 (MGP_CAROLIEiJ_G0032953) #36	Dusp21 (MGP_CAROLIEiJ_G0032954)	Kdm6a (MGP_CAROLIEiJ_G0032955)	Dipk2b (MGP_CAROLIEiJ_G0032956)
Ryukyu mouse	MODERN SPECIES		Dusp10 (MGP_CAROLIEiJ_G0015013)	1700056E22Rik (MGP_CAROLIEiJ_G0015014)	Hlx (MGP_CAROLIEiJ_G0015015)	Mtarc1 (MGP_CAROLIEiJ_G0015016)	MGP_CAROLIEiJ_G0015017	C130074G19Rik (MGP_CAROLIEiJ_G0015018)	Mark1 (MGP_CAROLIEiJ_G0015019)	Rab3gap2 (MGP_CAROLIEiJ_G0015020)	Iars2 (MGP_CAROLIEiJ_G0015021)	Bpnt1 (MGP_CAROLIEiJ_G0015022)	Eprs (MGP_CAROLIEiJ_G0015023)	Slc30a10 (MGP_CAROLIEiJ_G0015024)	Lyplal1 (MGP_CAROLIEiJ_G0015025)	Tgfb2 (MGP_CAROLIEiJ_G0015026)	Rrp15 (MGP_CAROLIEiJ_G0015027)	D1Pas1 (MGP_CAROLIEiJ_G0015028) #22	Spata17 (MGP_CAROLIEiJ_G0015029)	Gpatch2 (MGP_CAROLIEiJ_G0015030)	Esrrg (MGP_CAROLIEiJ_G0015031)	MGP_CAROLIEiJ_G0015032	Kctd3 (MGP_CAROLIEiJ_G0015033)	Kcnk2 (MGP_CAROLIEiJ_G0015034)	Cenpf (MGP_CAROLIEiJ_G0015035)	Ptpn14 (MGP_CAROLIEiJ_G0015036)	Smyd2 (MGP_CAROLIEiJ_G0015037)	Prox1 (MGP_CAROLIEiJ_G0015038)	Rps6kc1 (MGP_CAROLIEiJ_G0015039)	Angel2 (MGP_CAROLIEiJ_G0015040)	Vash2 (MGP_CAROLIEiJ_G0015041)	Flvcr1 (MGP_CAROLIEiJ_G0015042)	Spata45 (MGP_CAROLIEiJ_G0015043)
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000162492.h	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00950000183845	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00390000016779.b.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000161768.B	ENSGT00940000162231
Mouse	DUPLICATION
Mouse	MODERN SPECIES	37	H2al1a (ENSMUSG00000100626)	H2al1b (ENSMUSG00000101819)	H2al1c (ENSMUSG00000096097)	H2al1d (ENSMUSG00000094904)	H2al1e (ENSMUSG00000095413)	H2al1f (ENSMUSG00000095655)	H2al1g (ENSMUSG00000095662)	H2al1h (ENSMUSG00000099443)	H2al1i (ENSMUSG00000095445)	H2al1j (ENSMUSG00000069038)	Bcor (ENSMUSG00000040363) #15	Atp6ap2 (ENSMUSG00000031007) #17	1810030O07Rik (ENSMUSG00000044148) #19	Med14 (ENSMUSG00000064127) #20	Usp9x (ENSMUSG00000031010) #21	Ddx3x (ENSMUSG00000000787) #22	Nyx (ENSMUSG00000051228) #23	Cask (ENSMUSG00000031012) #26	Gpr34 (ENSMUSG00000040229) #24	Gpr82 (ENSMUSG00000047678) #25	H2al1n (ENSMUSG00000078346)	Cypt1 (ENSMUSG00000023257)	Maoa (ENSMUSG00000025037) #30	Maob (ENSMUSG00000040147) #31	Ndp (ENSMUSG00000040138) #32	Efhc2 (ENSMUSG00000025038) #35	Fundc1 (ENSMUSG00000025040) #36	Dusp21 (ENSMUSG00000025043)	Kdm6a (ENSMUSG00000037369)	Dipk2b (ENSMUSG00000037358)	Tex13c3 (ENSMUSG00000068149)
Mouse	MODERN SPECIES		Dusp10 (ENSMUSG00000039384)	1700056E22Rik (ENSMUSG00000044854)	Hlx (ENSMUSG00000039377)	Mtarc1 (ENSMUSG00000026621)	Mtarc2 (ENSMUSG00000073481)	C130074G19Rik (ENSMUSG00000039349)	Mark1 (ENSMUSG00000026620)	Rab3gap2 (ENSMUSG00000039318)	Iars2 (ENSMUSG00000026618)	Bpnt1 (ENSMUSG00000026617)	Eprs (ENSMUSG00000026615)	Slc30a10 (ENSMUSG00000026614)	Lyplal1 (ENSMUSG00000039246)	Tgfb2 (ENSMUSG00000039239)	Rrp15 (ENSMUSG00000001305)	D1Pas1 (ENSMUSG00000039224) #22	Spata17 (ENSMUSG00000026611)	Gpatch2 (ENSMUSG00000039210)	Esrrg (ENSMUSG00000026610)	Ush2a (ENSMUSG00000026609)	Kctd3 (ENSMUSG00000026608)	Kcnk2 (ENSMUSG00000037624)	Cenpf (ENSMUSG00000026605)	Ptpn14 (ENSMUSG00000026604)	Smyd2 (ENSMUSG00000026603)	Prox1 (ENSMUSG00000010175)	Rps6kc1 (ENSMUSG00000089872)	Angel2 (ENSMUSG00000026634)	Vash2 (ENSMUSG00000037568)	Flvcr1 (ENSMUSG00000066595)	Spata45 (ENSMUSG00000057072)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665	ENSGT00390000004585	ENSGT00940000157560.e	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00550000074815	ENSGT00900000143215	ENSGT00940000159967	ENSGT00940000159171	ENSGT00940000157390	ENSGT00390000001960	ENSGT00940000154443.b.a #22	ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000156560	ENSGT00730000111187.b	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00940000157391	ENSGT00390000012703.a	ENSGT01030000234625.B.c	ENSGT00390000018676
Steppe mouse	MODERN SPECIES	1031																ENSMSIG00000001024 #22
spretus	DUPLICATION
spretus	MODERN SPECIES	19	MGP_SPRETEiJ_G0034077	Dynlt3 (MGP_SPRETEiJ_G0034078) #7	H2ap (MGP_SPRETEiJ_G0034079)	H2al3 (MGP_SPRETEiJ_G0034080)	Sytl5 (MGP_SPRETEiJ_G0034081) #8	Srpx (MGP_SPRETEiJ_G0034082)	Rpgr (MGP_SPRETEiJ_G0034083) #9	Otc (MGP_SPRETEiJ_G0034084) #10	Tspan7 (MGP_SPRETEiJ_G0034085) #12	Mid1ip1 (MGP_SPRETEiJ_G0034086) #13	Bcor (MGP_SPRETEiJ_G0034087) #15	Atp6ap2 (MGP_SPRETEiJ_G0034088) #17	1810030O07Rik (MGP_SPRETEiJ_G0034089) #19	Med14 (MGP_SPRETEiJ_G0034090) #20	Usp9x (MGP_SPRETEiJ_G0034091) #21	Ddx3x (MGP_SPRETEiJ_G0034092) #22	Nyx (MGP_SPRETEiJ_G0034093) #23	Cask (MGP_SPRETEiJ_G0034094) #26	Gpr34 (MGP_SPRETEiJ_G0034095) #24	Gpr82 (MGP_SPRETEiJ_G0034096) #25	MGP_SPRETEiJ_G0034097	Maoa (MGP_SPRETEiJ_G0034098) #30	Maob (MGP_SPRETEiJ_G0034099) #31	Ndp (MGP_SPRETEiJ_G0034100) #32	Efhc2 (MGP_SPRETEiJ_G0034101) #35	Fundc1 (MGP_SPRETEiJ_G0034102) #36	Dusp21 (MGP_SPRETEiJ_G0034103)	Kdm6a (MGP_SPRETEiJ_G0034104)	Dipk2b (MGP_SPRETEiJ_G0034105)	Tex13c3 (MGP_SPRETEiJ_G0034106)	Chst7 (MGP_SPRETEiJ_G0034107)
spretus	MODERN SPECIES		Dusp10 (MGP_SPRETEiJ_G0015813)	1700056E22Rik (MGP_SPRETEiJ_G0015814)	Hlx (MGP_SPRETEiJ_G0015815)	Mtarc1 (MGP_SPRETEiJ_G0015816)	Mtarc2 (MGP_SPRETEiJ_G0015817)	C130074G19Rik (MGP_SPRETEiJ_G0015818)	Mark1 (MGP_SPRETEiJ_G0015819)	Rab3gap2 (MGP_SPRETEiJ_G0015820)	Iars2 (MGP_SPRETEiJ_G0015821)	Bpnt1 (MGP_SPRETEiJ_G0015822)	Eprs (MGP_SPRETEiJ_G0015823)	Slc30a10 (MGP_SPRETEiJ_G0015824)	Lyplal1 (MGP_SPRETEiJ_G0015825)	Tgfb2 (MGP_SPRETEiJ_G0015826)	Rrp15 (MGP_SPRETEiJ_G0015827)	D1Pas1 (MGP_SPRETEiJ_G0015828) #22	Spata17 (MGP_SPRETEiJ_G0015829)	Gpatch2 (MGP_SPRETEiJ_G0015830)	Esrrg (MGP_SPRETEiJ_G0015831)	MGP_SPRETEiJ_G0015832	Kctd3 (MGP_SPRETEiJ_G0015833)	Kcnk2 (MGP_SPRETEiJ_G0015834)	Cenpf (MGP_SPRETEiJ_G0015835)	Ptpn14 (MGP_SPRETEiJ_G0015836)	Smyd2 (MGP_SPRETEiJ_G0015837)	Ighv2-7 (MGP_SPRETEiJ_G0000034)	Prox1 (MGP_SPRETEiJ_G0015838)	Rps6kc1 (MGP_SPRETEiJ_G0015839)	Angel2 (MGP_SPRETEiJ_G0015840)	Vash2 (MGP_SPRETEiJ_G0015841)	Flvcr1 (MGP_SPRETEiJ_G0015842)
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	23	Cybb (MGP_PahariEiJ_G0031472)	Dynlt3 (MGP_PahariEiJ_G0031473) #7	H2ap (MGP_PahariEiJ_G0031474)	MGP_PahariEiJ_G0031475	Sytl5 (MGP_PahariEiJ_G0031476) #8	Srpx (MGP_PahariEiJ_G0031477)	Rpgr (MGP_PahariEiJ_G0031478) #9	Otc (MGP_PahariEiJ_G0031479) #10	Tspan7 (MGP_PahariEiJ_G0031480) #12	Mid1ip1 (MGP_PahariEiJ_G0031481) #13	Bcor (MGP_PahariEiJ_G0031482) #15	Atp6ap2 (MGP_PahariEiJ_G0031483) #17	1810030O07Rik (MGP_PahariEiJ_G0031484) #19	Med14 (MGP_PahariEiJ_G0031485) #20	Usp9x (MGP_PahariEiJ_G0031486) #21	Ddx3x (MGP_PahariEiJ_G0031487) #22	Nyx (MGP_PahariEiJ_G0031488) #23	Cask (MGP_PahariEiJ_G0031489) #26	Gpr34 (MGP_PahariEiJ_G0031490) #24	Gpr82 (MGP_PahariEiJ_G0031491) #25	Maoa (MGP_PahariEiJ_G0031492) #30	Maob (MGP_PahariEiJ_G0031493) #31	Ndp (MGP_PahariEiJ_G0031494) #32	Efhc2 (MGP_PahariEiJ_G0031495) #35	Fundc1 (MGP_PahariEiJ_G0031496) #36	Dusp21 (MGP_PahariEiJ_G0031497)	Kdm6a (MGP_PahariEiJ_G0031498)	Dipk2b (MGP_PahariEiJ_G0031499)	Chst7 (MGP_PahariEiJ_G0031500)	Slc9a7 (MGP_PahariEiJ_G0031501)	Rp2 (MGP_PahariEiJ_G0031502)
Shrew mouse	MODERN SPECIES	18	Dusp10 (MGP_PahariEiJ_G0028245)	1700056E22Rik (MGP_PahariEiJ_G0028246)	Hlx (MGP_PahariEiJ_G0028247)	Mtarc1 (MGP_PahariEiJ_G0028248)	Mtarc2 (MGP_PahariEiJ_G0028249)	C130074G19Rik (MGP_PahariEiJ_G0028250)	Mark1 (MGP_PahariEiJ_G0028251)	Rab3gap2 (MGP_PahariEiJ_G0028252)	Iars2 (MGP_PahariEiJ_G0028253)	Bpnt1 (MGP_PahariEiJ_G0028254)	Eprs (MGP_PahariEiJ_G0028255)	Slc30a10 (MGP_PahariEiJ_G0028256)	Lyplal1 (MGP_PahariEiJ_G0028257)	Tgfb2 (MGP_PahariEiJ_G0028258)	Rrp15 (MGP_PahariEiJ_G0028259)	D1Pas1 (MGP_PahariEiJ_G0028260) #22	Spata17 (MGP_PahariEiJ_G0028261)	Gpatch2 (MGP_PahariEiJ_G0028262)	Esrrg (MGP_PahariEiJ_G0028263)	Ush2a (MGP_PahariEiJ_G0028264)	Kctd3 (MGP_PahariEiJ_G0028265)	Kcnk2 (MGP_PahariEiJ_G0028266)	Cenpf (MGP_PahariEiJ_G0028267)	MGP_PahariEiJ_G0028268	MGP_PahariEiJ_G0028269	Prox1 (MGP_PahariEiJ_G0028270)	Rps6kc1 (MGP_PahariEiJ_G0028271)	Angel2 (MGP_PahariEiJ_G0028272)	Vash2 (MGP_PahariEiJ_G0028273)	Flvcr1 (MGP_PahariEiJ_G0028274)	Spata45 (MGP_PahariEiJ_G0028275)
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000162492.e	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.p ##15	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545.f #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a
Cricetidae_B	ANCESTRAL SPECIES	45	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00940000162492.e	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153.q #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.o #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545.f #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	475	H2ap (ENSPEMG00000025123)	ENSPEMG00000010876	Sytl5 (ENSPEMG00000018805) #8	Rpgr (ENSPEMG00000015885) #9	Otc (ENSPEMG00000013040) #10	Tspan7 (ENSPEMG00000013653) #12	Mid1ip1 (ENSPEMG00000025115) #13	ENSPEMG00000012951	Bcor (ENSPEMG00000011517) #15	Atp6ap2 (ENSPEMG00000011119) #17	ENSPEMG00000029718 #18	1810030O07Rik (ENSPEMG00000010471) #19	Med14 (ENSPEMG00000009411) #20	E330021D16Rik (ENSPEMG00000013160)	Usp9x (ENSPEMG00000016337) #21	Ddx3x (ENSPEMG00000014021) #22	Nyx (ENSPEMG00000013523) #23	Cask (ENSPEMG00000012945) #26	Gpr34 (ENSPEMG00000010219) #24	Gpr82 (ENSPEMG00000013070) #25	ENSPEMG00000026824 #28	Maoa (ENSPEMG00000006637) #30	Maob (ENSPEMG00000000761) #31	Ndp (ENSPEMG00000031057) #32	Efhc2 (ENSPEMG00000017598) #35	ENSPEMG00000026416 #34	ENSPEMG00000030035	Fundc1 (ENSPEMG00000015857) #36	ENSPEMG00000028041	ENSPEMG00000029572	ENSPEMG00000024903
Northern American deer mouse	MODERN SPECIES	2	1700056E22Rik (ENSPEMG00000027598)	Dusp10 (ENSPEMG00000022574)	Hlx (ENSPEMG00000021851)	Mtarc1 (ENSPEMG00000022917)	Mtarc2 (ENSPEMG00000008290)	C130074G19Rik (ENSPEMG00000031099)	Mark1 (ENSPEMG00000023503)	Rab3gap2 (ENSPEMG00000009957)	Iars2 (ENSPEMG00000000136)	Bpnt1 (ENSPEMG00000009846)	Eprs (ENSPEMG00000017287)	Slc30a10 (ENSPEMG00000011831)	Lyplal1 (ENSPEMG00000012126)	Tgfb2 (ENSPEMG00000014434)	Rrp15 (ENSPEMG00000009408)	D1Pas1 (ENSPEMG00000010847) #22	Spata17 (ENSPEMG00000012857)	Gpatch2 (ENSPEMG00000018364)	Esrrg (ENSPEMG00000024753)	Ush2a (ENSPEMG00000011465)	Kctd3 (ENSPEMG00000010370)	Kcnk2 (ENSPEMG00000003700)	ENSPEMG00000030532	Cenpf (ENSPEMG00000008292)	Ptpn14 (ENSPEMG00000012598)	Smyd2 (ENSPEMG00000016202)	ENSPEMG00000029028	Prox1 (ENSPEMG00000005585)	ENSPEMG00000025216	ENSPEMG00000006434	Rps6kc1 (ENSPEMG00000008234)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	Tspan7 (ENSMOCG00000021984) #12	Mid1ip1 (ENSMOCG00000009515) #13	ENSMOCG00000007720	ENSMOCG00000010154	ENSMOCG00000021216 #15	ENSMOCG00000021841 ##15	ENSMOCG00000009697	Atp6ap2 (ENSMOCG00000010803) #17	1810030O07Rik (ENSMOCG00000009974) #19	ENSMOCG00000016696 #20	ENSMOCG00000016742	ENSMOCG00000005802	E330021D16Rik (ENSMOCG00000006042)	Usp9x (ENSMOCG00000009609) #21	ENSMOCG00000008046	Ddx3x (ENSMOCG00000014170) #22	Nyx (ENSMOCG00000018188) #23	Cask (ENSMOCG00000007637) #26	Gpr34 (ENSMOCG00000016433) #24	Gpr82 (ENSMOCG00000003874) #25	ENSMOCG00000016039	Lrrc38 (ENSMOCG00000014237)	ENSMOCG00000015618	ENSMOCG00000018838	ENSMOCG00000021077	ENSMOCG00000002830	ENSMOCG00000007192	Tmem51 (ENSMOCG00000009847)	Fhad1 (ENSMOCG00000015308)	Efhd2 (ENSMOCG00000002945)	ENSMOCG00000006919
Prairie vole	MODERN SPECIES	14	Dusp10 (ENSMOCG00000000398)	Hlx (ENSMOCG00000002071)	Mtarc1 (ENSMOCG00000003291)	Mtarc2 (ENSMOCG00000016564)	C130074G19Rik (ENSMOCG00000017582)	Mark1 (ENSMOCG00000010578)	Rab3gap2 (ENSMOCG00000022853)	Iars2 (ENSMOCG00000017822)	Bpnt1 (ENSMOCG00000011708)	Eprs (ENSMOCG00000012748)	ENSMOCG00000016971	Slc30a10 (ENSMOCG00000018487)	Lyplal1 (ENSMOCG00000019697)	Tgfb2 (ENSMOCG00000022415)	Rrp15 (ENSMOCG00000019339)	D1Pas1 (ENSMOCG00000002596) #22	Spata17 (ENSMOCG00000006657)	Gpatch2 (ENSMOCG00000020821)	ENSMOCG00000008935	Esrrg (ENSMOCG00000013956)	Kctd3 (ENSMOCG00000021391)	Kcnk2 (ENSMOCG00000018400)	Cenpf (ENSMOCG00000012377)	Ptpn14 (ENSMOCG00000010851)	Smyd2 (ENSMOCG00000000847)	Prox1 (ENSMOCG00000003310)	ENSMOCG00000014377	Rps6kc1 (ENSMOCG00000021401)	Angel2 (ENSMOCG00000022027)	Vash2 (ENSMOCG00000002399)	Flvcr1 (ENSMOCG00000013229)
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665	ENSGT00390000004585	ENSGT00940000157560.e	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00550000074815	ENSGT00900000143215	ENSGT00940000159967	ENSGT00940000159171	ENSGT00940000157390	ENSGT00390000001960	ENSGT00940000154443.b.a #22	ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000156560	ENSGT00730000111187.b	ENSGT00940000156874	ENSGT00940000157082	ENSGT00940000154790.a.a.b	ENSGT00940000155656	ENSGT00940000157391	ENSGT00390000012703.a	ENSGT01030000234625.B.c	ENSGT00390000018676
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	175	ENSCGRG00001011543	Sytl5 (ENSCGRG00001023173) #8	Rpgr (ENSCGRG00001017432) #9	Otc (ENSCGRG00001001226) #10	ENSCGRG00001010548 #11	Tspan7 (ENSCGRG00001017377) #12	Mid1ip1 (ENSCGRG00001009863) #13	ENSCGRG00001003048	Bcor (ENSCGRG00001017450) #15	Atp6ap2 (ENSCGRG00001008860) #17	ENSCGRG00001010043 #18	1810030O07Rik (ENSCGRG00001022070) #19	Med14 (ENSCGRG00001000873) #20	E330021D16Rik (ENSCGRG00001005473)	Usp9x (ENSCGRG00001022402) #21	Ddx3x (ENSCGRG00001022185) #22	ENSCGRG00001020496	Nyx (ENSCGRG00001023872) #23	Cask (ENSCGRG00001018099) #26	Gpr34 (ENSCGRG00001009221) #24	Gpr82 (ENSCGRG00001008634) #25	Maoa (ENSCGRG00001003371) #30	Maob (ENSCGRG00001012026) #31	Ndp (ENSCGRG00001012325) #32	Efhc2 (ENSCGRG00001004152) #35	ENSCGRG00001011048 #36	ENSCGRG00001016563	Dusp21 (ENSCGRG00001000819)	Kdm6a (ENSCGRG00001023077)	Dipk2b (ENSCGRG00001024325)	ENSCGRG00001000706
Chinese hamster chok1gshd	MODERN SPECIES	2	Hlx (ENSCGRG00001023360)	Mtarc1 (ENSCGRG00001018406)	Mtarc2 (ENSCGRG00001016855)	C130074G19Rik (ENSCGRG00001013262)	Mark1 (ENSCGRG00001018044)	Rab3gap2 (ENSCGRG00001003478)	Iars2 (ENSCGRG00001023111)	Bpnt1 (ENSCGRG00001023609)	EPRS (ENSCGRG00001009885)	Slc30a10 (ENSCGRG00001004526)	ENSCGRG00001010835	Lyplal1 (ENSCGRG00001016783)	ENSCGRG00001012226	Tgfb2 (ENSCGRG00001021969)	Rrp15 (ENSCGRG00001023815)	D1Pas1 (ENSCGRG00001002373) #22	Spata17 (ENSCGRG00001019652)	Gpatch2 (ENSCGRG00001024577)	ENSCGRG00001012111	Esrrg (ENSCGRG00001012185)	Ush2a (ENSCGRG00001010994)	Kctd3 (ENSCGRG00001016634)	Kcnk2 (ENSCGRG00001013573)	Cenpf (ENSCGRG00001016593)	Ptpn14 (ENSCGRG00001017884)	Smyd2 (ENSCGRG00001013013)	Prox1 (ENSCGRG00001000943)	ENSCGRG00001012264	Rps6kc1 (ENSCGRG00001018952)	Angel2 (ENSCGRG00001024663)	Vash2 (ENSCGRG00001022829)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	717	Dynlt3 (ENSMAUG00000015141) #7	ENSMAUG00000008638 #8	ENSMAUG00000020752	Rpgr (ENSMAUG00000001619) #9	Otc (ENSMAUG00000009398) #10	Tspan7 (ENSMAUG00000016617) #12	Mid1ip1 (ENSMAUG00000014237) #13	ENSMAUG00000008218 ##15	ENSMAUG00000008014 #15	Atp6ap2 (ENSMAUG00000021791) #17	1810030O07Rik (ENSMAUG00000018848) #19	ENSMAUG00000018384	Med14 (ENSMAUG00000011652) #20	ENSMAUG00000003759	Usp9x (ENSMAUG00000015465) #21	Ddx3x (ENSMAUG00000021962) #22	Gpr34 (ENSMAUG00000020755) #24	Gpr82 (ENSMAUG00000003517) #25	Cask (ENSMAUG00000018107) #26	ENSMAUG00000008252	Maoa (ENSMAUG00000017953) #30	Maob (ENSMAUG00000017384) #31	Ndp (ENSMAUG00000001320) #32	Efhc2 (ENSMAUG00000020354) #35	Fundc1 (ENSMAUG00000002313) #36	Dusp21 (ENSMAUG00000003084)	Kdm6a (ENSMAUG00000008372)	Dipk2b (ENSMAUG00000016254)
Golden Hamster	MODERN SPECIES	744	Hlx (ENSMAUG00000020373)	Mtarc1 (ENSMAUG00000005520)	Mtarc2 (ENSMAUG00000010919)	C130074G19Rik (ENSMAUG00000014190)	Mark1 (ENSMAUG00000007381)	Rab3gap2 (ENSMAUG00000010814)	Iars2 (ENSMAUG00000012822)	Bpnt1 (ENSMAUG00000020057)	Eprs (ENSMAUG00000012512)	ENSMAUG00000001832	Slc30a10 (ENSMAUG00000007513)	ENSMAUG00000020698	Lyplal1 (ENSMAUG00000017031)	Tgfb2 (ENSMAUG00000010097)	Rrp15 (ENSMAUG00000020012)	D1Pas1 (ENSMAUG00000000329) #22	Spata17 (ENSMAUG00000008429)	Gpatch2 (ENSMAUG00000004851)	ENSMAUG00000009220	ENSMAUG00000002879	Kctd3 (ENSMAUG00000016425)	Kcnk2 (ENSMAUG00000004359)	Cenpf (ENSMAUG00000017524)
Upper Galilee mountains blind mole rat	MODERN SPECIES	461						Mid1ip1 (ENSNGAG00000012989) #13	ENSNGAG00000013284 #15	ENSNGAG00000014390 ##15	ENSNGAG00000017147	Atp6ap2 (ENSNGAG00000014902) #17	1810030O07Rik (ENSNGAG00000018470) #19	Med14 (ENSNGAG00000000544) #20	E330021D16Rik (ENSNGAG00000005804)	ENSNGAG00000022683	Usp9x (ENSNGAG00000012060) #21	Ddx3x (ENSNGAG00000018077) #22	Nyx (ENSNGAG00000011629) #23	Cask (ENSNGAG00000008097) #26	Gpr34 (ENSNGAG00000018163) #24	Gpr82 (ENSNGAG00000018110) #25	ENSNGAG00000015190	ENSNGAG00000018371	Maoa (ENSNGAG00000013137) #30
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	124	Dynlt3 (ENSJJAG00000000829) #7	ENSJJAG00000003835	Sytl5 (ENSJJAG00000009155) #8	Srpx (ENSJJAG00000012346)	Rpgr (ENSJJAG00000014640) #9	Otc (ENSJJAG00000017566) #10	Tspan7 (ENSJJAG00000017974) #12	ENSJJAG00000018161	Mid1ip1 (ENSJJAG00000013196) #13	Bcor (ENSJJAG00000018755) #15	ENSJJAG00000019088 #17	1810030O07Rik (ENSJJAG00000019402) #19	Med14 (ENSJJAG00000020727) #20	E330021D16Rik (ENSJJAG00000013240)	Usp9x (ENSJJAG00000023449) #21	Ddx3x (ENSJJAG00000019645) #22	Nyx (ENSJJAG00000020005) #23	Cask (ENSJJAG00000022808) #26	Gpr34 (ENSJJAG00000013331) #24	ENSJJAG00000010094	ENSJJAG00000010651	ENSJJAG00000010745	ENSJJAG00000010951	Maoa (ENSJJAG00000011331) #30	Maob (ENSJJAG00000012262) #31	Ndp (ENSJJAG00000013001) #32	Efhc2 (ENSJJAG00000013365) #35	ENSJJAG00000013961 #36	ENSJJAG00000013443	Kdm6a (ENSJJAG00000016122)	Dipk2b (ENSJJAG00000009786)
Lesser Egyptian jerboa	MODERN SPECIES	183	Mtarc2 (ENSJJAG00000022870)	C130074G19Rik (ENSJJAG00000022955)	Mark1 (ENSJJAG00000023098)	ENSJJAG00000013268	Rab3gap2 (ENSJJAG00000011131)	Iars2 (ENSJJAG00000017672)	Bpnt1 (ENSJJAG00000021454)	Eprs (ENSJJAG00000022291)	Slc30a10 (ENSJJAG00000011430)	ENSJJAG00000012285	ENSJJAG00000015810	Lyplal1 (ENSJJAG00000015935)	Tgfb2 (ENSJJAG00000016341)	Rrp15 (ENSJJAG00000016693)	ENSJJAG00000017629	ENSJJAG00000017736 #22	Spata17 (ENSJJAG00000018007)	Gpatch2 (ENSJJAG00000019244)
Kangaroo rat	MODERN SPECIES	415	Xk (ENSDORG00000002044)	Cybb (ENSDORG00000012634)	Dynlt3 (ENSDORG00000028646) #7	ENSDORG00000028985	Sytl5 (ENSDORG00000015043) #8	Srpx (ENSDORG00000015046)	Rpgr (ENSDORG00000003222) #9	ENSDORG00000014052 #10	ENSDORG00000029598 #12	Mid1ip1 (ENSDORG00000029503) #13	Bcor (ENSDORG00000028994) #15	ENSDORG00000024862 #17	1810030O07Rik (ENSDORG00000005555) #19	Med14 (ENSDORG00000016439) #20	Usp9x (ENSDORG00000002122) #21	Ddx3x (ENSDORG00000029882) #22	ENSDORG00000028747
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000163202	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517.i #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231	ENSGT00940000153460.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	56	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517.i #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a	ENSGT00940000158262
Hystricomorpha_b	ANCESTRAL SPECIES	112	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.d #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25
Degu	DUPLICATION
Degu	MODERN SPECIES	273					ENSODEG00000001662	BCOR (ENSODEG00000001651) #15	ENSODEG00000001626	ENSODEG00000001615 #17	CXorf38 (ENSODEG00000001590) #19	MED14 (ENSODEG00000001567) #20	ENSODEG00000001539	ENSODEG00000001529	ENSODEG00000001518	ENSODEG00000018682	USP9X (ENSODEG00000001431) #21	ENSODEG00000001355 #22	NYX (ENSODEG00000001332) #23	GPR34 (ENSODEG00000018828) #24	GPR82 (ENSODEG00000002230) #25	CASK (ENSODEG00000002069) #26
Degu	MODERN SPECIES	174	CHRM3 (ENSODEG00000018767)	ENSODEG00000001479	DIP2C (ENSODEG00000001215)	LARP4B (ENSODEG00000001109)	ENSODEG00000000996	ENSODEG00000000962	ENSODEG00000018642	IDI1 (ENSODEG00000000876)	ENSODEG00000018637	WDR37 (ENSODEG00000000667)	ADARB2 (ENSODEG00000000345)	PFKP (ENSODEG00000001414)	PITRM1 (ENSODEG00000001019)	ENSODEG00000018627	ENSODEG00000000895	ENSODEG00000001314 #22	UPF2 (ENSODEG00000001290)	PROSER2 (ENSODEG00000001252)	ECHDC3 (ENSODEG00000001170)	USP6NL (ENSODEG00000001090)	ENSODEG00000001039	CELF2 (ENSODEG00000000887)
Long-tailed chinchilla	MODERN SPECIES	272												ENSCLAG00000000487 #17	CXorf38 (ENSCLAG00000001694) #19	MED14 (ENSCLAG00000000401) #20	USP9X (ENSCLAG00000000715) #21	DDX3X (ENSCLAG00000000993) #22	NYX (ENSCLAG00000000969) #23	GPR34 (ENSCLAG00000000960) #24	CASK (ENSCLAG00000001067) #26
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	33	ENSCPOG00000020434	SYTL5 (ENSCPOG00000013051) #8	SRPX (ENSCPOG00000013055)	ENSCPOG00000023879 #9	OTC (ENSCPOG00000012895) #10	ENSCPOG00000023154 #11	TSPAN7 (ENSCPOG00000000183) #12	MID1IP1 (ENSCPOG00000026903) #13	ENSCPOG00000038948	BCOR (ENSCPOG00000003878) #15	ATP6AP2 (ENSCPOG00000000756) #17	MPC1L (ENSCPOG00000022729) #18	CXorf38 (ENSCPOG00000014304) #19	MED14 (ENSCPOG00000031296) #20	USP9X (ENSCPOG00000033622) #21	ENSCPOG00000013557 #22	NYX (ENSCPOG00000010847) #23	CASK (ENSCPOG00000010851) #26	ENSCPOG00000007290	MAOA (ENSCPOG00000001030) #30	MAOB (ENSCPOG00000000980) #31	NDP (ENSCPOG00000040535) #32	EFHC2 (ENSCPOG00000014599) #35	FUNDC1 (ENSCPOG00000030724) #36	ENSCPOG00000001385	KDM6A (ENSCPOG00000014475)	DIPK2B (ENSCPOG00000037434)	ENSCPOG00000040315	SI (ENSCPOG00000005878)	SLITRK3 (ENSCPOG00000005080)	BCHE (ENSCPOG00000004998)
Guinea pig	MODERN SPECIES	127												CENPH (ENSCPOG00000032206)	ENSCPOG00000014629	SLC30A5 (ENSCPOG00000003972)	PIK3R1 (ENSCPOG00000007820)	ENSCPOG00000039190 #22	CD180 (ENSCPOG00000000757)	MAST4 (ENSCPOG00000000754)	SREK1 (ENSCPOG00000008925)	ERBIN (ENSCPOG00000007387)	NLN (ENSCPOG00000007919)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000020528	ENSHGLG00000043721	OTC (ENSHGLG00000006935) #10	ENSHGLG00000020377 #11	TSPAN7 (ENSHGLG00000008684) #12	ENSHGLG00000045058	MID1IP1 (ENSHGLG00000047790) #13	ENSHGLG00000005272	BCOR (ENSHGLG00000004759) #15	ENSHGLG00000044824	ATP6AP2 (ENSHGLG00000009344) #17	MPC1L (ENSHGLG00000020388) #18	CXorf38 (ENSHGLG00000005921) #19	MED14 (ENSHGLG00000005145) #20	USP9X (ENSHGLG00000005613) #21	Ddx3x (ENSHGLG00000004805) #22	ENSHGLG00000034784	NYX (ENSHGLG00000004422) #23	ENSHGLG00000016669	ENSHGLG00000037147	CASK (ENSHGLG00000008006) #26	ENSHGLG00000047643	GPR34 (ENSHGLG00000041208) #24	GPR82 (ENSHGLG00000018778) #25	ENSHGLG00000012354	ENSHGLG00000048297 #28	ENSHGLG00000039815	ENSHGLG00000048133 #30	MAOB (ENSHGLG00000018385) #31	ENSHGLG00000018403	NDP (ENSHGLG00000008619) #32
Naked mole-rat female	MODERN SPECIES	11	AQR (ENSHGLG00000013912)	ENSHGLG00000043341	ENSHGLG00000018281	ENSHGLG00000014742	ENSHGLG00000039929	ENSHGLG00000018587	ENSHGLG00000006535	SCG5 (ENSHGLG00000007916)	GREM1 (ENSHGLG00000005364)	ENSHGLG00000041336	FMN1 (ENSHGLG00000014841)	ENSHGLG00000035816	ENSHGLG00000002157	ENSHGLG00000037779	ENSHGLG00000018729	ENSHGLG00000010084 #22	AVEN (ENSHGLG00000045851)	CHRM5 (ENSHGLG00000037713)	EMC7 (ENSHGLG00000033584)	ENSHGLG00000008947	ENSHGLG00000037962	EMC4 (ENSHGLG00000048276)	ENSHGLG00000018387	SLC12A6 (ENSHGLG00000005061)	NOP10 (ENSHGLG00000005973)	NUTM1 (ENSHGLG00000002024)	LPCAT4 (ENSHGLG00000033090)	ENSHGLG00000032473	ENSHGLG00000019869	ENSHGLG00000036469	PARP2 (ENSHGLG00000002524)
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b.q #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162233	ENSGT00940000162231	ENSGT00940000153460.c.a
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	156	CYBB (ENSSVLG00005019783)	DYNLT3 (ENSSVLG00005019706) #7	ENSSVLG00005019604	SYTL5 (ENSSVLG00005019419) #8	SRPX (ENSSVLG00005019058)	ENSSVLG00005018959 #9	OTC (ENSSVLG00005018838) #10	ENSSVLG00005018801 #12	MID1IP1 (ENSSVLG00005018779) #13	BCOR (ENSSVLG00005018727) #15	ATP6AP2 (ENSSVLG00005018414) #17	MPC1L (ENSSVLG00005018339) #18	ENSSVLG00005018247 #19	MED14 (ENSSVLG00005018208) #20	USP9X (ENSSVLG00005018130) #21	ENSSVLG00005016422 #22	NYX (ENSSVLG00005016295) #23	GPR34 (ENSSVLG00005016276) #24	GPR82 (ENSSVLG00005016259) #25	CASK (ENSSVLG00005015944) #26	ENSSVLG00005015798 #28	ENSSVLG00005015713	MAOA (ENSSVLG00005015484) #30	MAOB (ENSSVLG00005015336) #31	NDP (ENSSVLG00005015288) #32	EFHC2 (ENSSVLG00005015126) #35	FUNDC1 (ENSSVLG00005015082) #36	DUSP21 (ENSSVLG00005015061)	ENSSVLG00005014404	DIPK2B (ENSSVLG00005014249)	ENSSVLG00005014200
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005004485	ENSSVLG00005004455	ENSSVLG00005004422	ENSSVLG00005004408	ENSSVLG00005004400	ENSSVLG00005004387	ENSSVLG00005004363	ZNF582 (ENSSVLG00005004324)	ENSSVLG00005004183	ENSSVLG00005004081	ENSSVLG00005004042	ENSSVLG00005004033	ENSSVLG00005004015	ENSSVLG00005004004	ENSSVLG00005003992	ENSSVLG00005003973 #22	ENSSVLG00005003956	ENSSVLG00005003941	ENSSVLG00005003891	ENSSVLG00005003873	ENSSVLG00005003860	ENSSVLG00005003841	ENSSVLG00005003815	ENSSVLG00005003798	ENSSVLG00005003786	ENSSVLG00005003760	ENSSVLG00005003734	ENSSVLG00005003725	PCDH15 (ENSSVLG00005001690)	ENSSVLG00005000413	ZWINT (ENSSVLG00005000285)
Eurasian red squirrel	MODERN SPECIES	75																ENSSVLG00005014321 #22	ENSSVLG00005014368	ENSSVLG00005014406
Marmotini	ANCESTRAL SPECIES	64	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b.q #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Alpin marmot	MODERN SPECIES	21	ENSMMMG00000010001	DYNLT3 (ENSMMMG00000010004) #7	ENSMMMG00000010049	SYTL5 (ENSMMMG00000010054) #8	SRPX (ENSMMMG00000010108)	ENSMMMG00000010133 #9	OTC (ENSMMMG00000010392) #10	ENSMMMG00000010431 #11	TSPAN7 (ENSMMMG00000010451) #12	BCOR (ENSMMMG00000010519) #15	ATP6AP2 (ENSMMMG00000010656) #17	ENSMMMG00000010690	MPC1L (ENSMMMG00000010695) #18	MED14 (ENSMMMG00000010703) #20	USP9X (ENSMMMG00000010802) #21	DDX3X (ENSMMMG00000010865) #22	ENSMMMG00000010902	ENSMMMG00000010906	CASK (ENSMMMG00000010916) #26	GPR34 (ENSMMMG00000011165) #24	GPR82 (ENSMMMG00000011172) #25	ENSMMMG00000011202 #28	MAOA (ENSMMMG00000011225) #30	MAOB (ENSMMMG00000011245) #31	NDP (ENSMMMG00000011581) #32	EFHC2 (ENSMMMG00000011586) #35	ENSMMMG00000011611 #34	ENSMMMG00000011619	FUNDC1 (ENSMMMG00000011627) #36	ENSMMMG00000011659	DUSP21 (ENSMMMG00000011667)
Marmotini_b	ANCESTRAL SPECIES	94	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b.q #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162231
Squirrel	MODERN SPECIES	102	SYTL5 (ENSSTOG00000029210) #8	ENSSTOG00000023192	SRPX (ENSSTOG00000007767)	ENSSTOG00000022470 #9	OTC (ENSSTOG00000004056) #10	ENSSTOG00000019432 #11	TSPAN7 (ENSSTOG00000012077) #12	MID1IP1 (ENSSTOG00000027194) #13	BCOR (ENSSTOG00000003219) #15	ATP6AP2 (ENSSTOG00000005456) #17	ENSSTOG00000031229	MPC1L (ENSSTOG00000026402) #18	CXorf38 (ENSSTOG00000005469) #19	MED14 (ENSSTOG00000022333) #20	USP9X (ENSSTOG00000000797) #21	DDX3X (ENSSTOG00000008094) #22	ENSSTOG00000029381	NYX (ENSSTOG00000027262) #23	CASK (ENSSTOG00000005927) #26	GPR34 (ENSSTOG00000001566) #24	GPR82 (ENSSTOG00000028760) #25	MAOA (ENSSTOG00000004958) #30	MAOB (ENSSTOG00000004985) #31	NDP (ENSSTOG00000010960) #32	EFHC2 (ENSSTOG00000014917) #35	FUNDC1 (ENSSTOG00000025782) #36	ENSSTOG00000007072	KDM6A (ENSSTOG00000001596)	DIPK2B (ENSSTOG00000002326)	ENSSTOG00000030183	CHST7 (ENSSTOG00000025227)
Arctic ground squirrel	MODERN SPECIES	50	XK (ENSUPAG00010017431)	CYBB (ENSUPAG00010017438)	DYNLT3 (ENSUPAG00010017456) #7	ENSUPAG00010017463	SYTL5 (ENSUPAG00010017470) #8	ENSUPAG00010000022 #9	OTC (ENSUPAG00010000958) #10	ENSUPAG00010000980 #11	TSPAN7 (ENSUPAG00010001001) #12	ENSUPAG00010001115 #15	ATP6AP2 (ENSUPAG00010001133) #17	MPC1L (ENSUPAG00010001147) #18	CXorf38 (ENSUPAG00010001158) #19	MED14 (ENSUPAG00010001193) #20	USP9X (ENSUPAG00010001270) #21	DDX3X (ENSUPAG00010001313) #22	ENSUPAG00010001364	NYX (ENSUPAG00010001369) #23	CASK (ENSUPAG00010001389) #26	GPR34 (ENSUPAG00010001586) #24	GPR82 (ENSUPAG00010001592) #25	ENSUPAG00010001628 #28	MAOA (ENSUPAG00010001649) #30	MAOB (ENSUPAG00010001680) #31	NDP (ENSUPAG00010001702) #32	EFHC2 (ENSUPAG00010001710) #35	ENSUPAG00010001750 #34
Lagomorpha	ANCESTRAL SPECIES	43	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Rabbit	MODERN SPECIES	1401	CYBB (ENSOCUG00000032490)	ENSOCUG00000009787 #7	ENSOCUG00000000454	SYTL5 (ENSOCUG00000008263) #8	SRPX (ENSOCUG00000008272)	ENSOCUG00000021720 #9	OTC (ENSOCUG00000010532) #10	TSPAN7 (ENSOCUG00000008424) #12	MID1IP1 (ENSOCUG00000002707) #13	BCOR (ENSOCUG00000017052) #15	ATP6AP2 (ENSOCUG00000015259) #17	MPC1L (ENSOCUG00000015273) #18	CXorf38 (ENSOCUG00000015277) #19	MED14 (ENSOCUG00000015286) #20	USP9X (ENSOCUG00000007198) #21	DDX3X (ENSOCUG00000012338) #22	NYX (ENSOCUG00000004856) #23	CASK (ENSOCUG00000004864) #26	GPR34 (ENSOCUG00000003220) #24	GPR82 (ENSOCUG00000003218) #25	ENSOCUG00000030365	ENSOCUG00000025629	ENSOCUG00000012846 #28	MAOA (ENSOCUG00000001429) #30	MAOB (ENSOCUG00000001436) #31	NDP (ENSOCUG00000021324) #32	EFHC2 (ENSOCUG00000010292) #35	ENSOCUG00000027904 #34	ENSOCUG00000029753 #36	DUSP21 (ENSOCUG00000009969)	KDM6A (ENSOCUG00000014741)
Pika	MODERN SPECIES	4761																DDX3X (ENSOPRG00000004720) #22
Primates	ANCESTRAL SPECIES	19	ENSGT00940000162492	ENSGT00940000155009.k.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Strepsirrhini	ANCESTRAL SPECIES	23	ENSGT00390000015623	ENSGT00940000155009.l #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b.r #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162233	ENSGT00940000162231	ENSGT00940000153460.c.a	ENSGT00940000158262
Lemuriformes	ANCESTRAL SPECIES	46	ENSGT00940000160244	ENSGT00940000155009.l.c.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b.r #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i	ENSGT00940000162233	ENSGT00940000162231	ENSGT00940000153460.c.a	ENSGT00940000158262
Mouse lemur	MODERN SPECIES	169	SRPX (ENSMICG00000001454)	ENSMICG00000026397 #9	OTC (ENSMICG00000011724) #10	TSPAN7 (ENSMICG00000011737) #12	MID1IP1 (ENSMICG00000042367) #13	BCOR (ENSMICG00000006169) #15	ENSMICG00000038133	ATP6AP2 (ENSMICG00000014583) #17	CXorf38 (ENSMICG00000015213) #19	MED14 (ENSMICG00000015221) #20	ENSMICG00000044341	ENSMICG00000030704	ENSMICG00000032741	ENSMICG00000027461	USP9X (ENSMICG00000027320) #21	DDX3X (ENSMICG00000032772) #22	NYX (ENSMICG00000008813) #23	CASK (ENSMICG00000000276) #26	ENSMICG00000034936	ENSMICG00000046904	MAOA (ENSMICG00000002042) #30	MAOB (ENSMICG00000031145) #31	NDP (ENSMICG00000034006) #32	EFHC2 (ENSMICG00000002062) #35	FUNDC1 (ENSMICG00000000450) #36	KDM6A (ENSMICG00000015025)	ENSMICG00000036836	DIPK2B (ENSMICG00000037484)	ENSMICG00000033383	ENSMICG00000031312	ENSMICG00000045898
Lemuriformes_a	ANCESTRAL SPECIES	141	ENSGT00940000155009.l.c.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00390000010165.i.b.b.a	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b.r #26	ENSGT00940000160514 #30	ENSGT00940000161545.b #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00390000009776.i
Coquerels sifaka	MODERN SPECIES	271											MED14 (ENSPCOG00000016287) #20	ENSPCOG00000013254	ENSPCOG00000027830	ENSPCOG00000022654	USP9X (ENSPCOG00000028687) #21	DDX3X (ENSPCOG00000027628) #22	NYX (ENSPCOG00000018457) #23	ENSPCOG00000013948	CASK (ENSPCOG00000025249) #26	ENSPCOG00000010714	ENSPCOG00000027023	MAOA (ENSPCOG00000022947) #30	MAOB (ENSPCOG00000025423) #31	NDP (ENSPCOG00000022161) #32	EFHC2 (ENSPCOG00000016137) #35	FUNDC1 (ENSPCOG00000017139) #36	KDM6A (ENSPCOG00000028617)	DIPK2B (ENSPCOG00000028661)	ENSPCOG00000026336
Greater bamboo lemur	MODERN SPECIES	31										ATP6AP2 (ENSPSMG00000004260) #17	MPC1L (ENSPSMG00000004139) #18	CXorf38 (ENSPSMG00000004132) #19	MED14 (ENSPSMG00000004113) #20	ENSPSMG00000004058	USP9X (ENSPSMG00000001598) #21	DDX3X (ENSPSMG00000000334) #22	NYX (ENSPSMG00000000018) #23	GPR82 (ENSPSMG00000025066) #25	CASK (ENSPSMG00000024926) #26
Bushbaby	MODERN SPECIES	273	SRPX (ENSOGAG00000010711)	ENSOGAG00000008761 #9	OTC (ENSOGAG00000008763) #10	ENSOGAG00000033631 #11	TSPAN7 (ENSOGAG00000008547) #12	MID1IP1 (ENSOGAG00000014244) #13	ENSOGAG00000006761 #15	ATP6AP2 (ENSOGAG00000000341) #17	CXorf38 (ENSOGAG00000009290) #19	ENSOGAG00000009294 #20	ENSOGAG00000000027	ENSOGAG00000033744	ENSOGAG00000027162	USP9X (ENSOGAG00000027364) #21	ENSOGAG00000027756	DDX3X (ENSOGAG00000005311) #22
Haplorrhini	ANCESTRAL SPECIES	18	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000155009.k.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000162492	ENSGT00940000155009.k.a.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00940000155616.c.b #34	ENSGT00940000154517.e.b #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Platyrrhini	ANCESTRAL SPECIES	28	ENSGT00940000158618 #8	ENSGT00940000162492	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000155375.c #21	ENSGT00440000034918.q.a.a.b.b.b	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517.e.b #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT01050000247973	ENSGT00940000173218	ENSGT00940000162233.u.b.a.a
Mas night monkey	MODERN SPECIES	678	SYTL5 (ENSANAG00000032000) #8	ENSANAG00000037306	SRPX (ENSANAG00000022863)	RPGR (ENSANAG00000027653) #9	OTC (ENSANAG00000038446) #10	TSPAN7 (ENSANAG00000026194) #12	MID1IP1 (ENSANAG00000018677) #13	BCOR (ENSANAG00000020198) #15	ENSANAG00000035058	ATP6AP2 (ENSANAG00000036929) #17	ENSANAG00000004121	CXorf38 (ENSANAG00000030365) #19	MED14 (ENSANAG00000024459) #20	USP9X (ENSANAG00000036319) #21	ENSANAG00000038233	DDX3X (ENSANAG00000017441) #22	NYX (ENSANAG00000032296) #23	CASK (ENSANAG00000021037) #26	GPR34 (ENSANAG00000019752) #24	ENSANAG00000025353	ENSANAG00000033764	ENSANAG00000031554	MAOA (ENSANAG00000031969) #30	MAOB (ENSANAG00000034907) #31	NDP (ENSANAG00000023159) #32	ENSANAG00000038387	EFHC2 (ENSANAG00000026366) #35	FUNDC1 (ENSANAG00000035033) #36	ENSANAG00000025278	KDM6A (ENSANAG00000027908)	ENSANAG00000002274
Cebidae	ANCESTRAL SPECIES	18	ENSGT00940000158618 #8	ENSGT00940000162492	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000155375.c #21	ENSGT00440000034918.q.a.a.b.b.b	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517.e.b #36	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT01050000247973	ENSGT00940000173218	ENSGT00940000162233.u.b.a.a	ENSGT00940000162233.u.b.a.b
Cebidae_a	ANCESTRAL SPECIES	36	ENSGT00940000160244	ENSGT00940000155009.k.a.a #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.i #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000155375.c #21	ENSGT00440000034918.q.a.a.b.b.b	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24
Capuchin	MODERN SPECIES	611										ATP6AP2 (ENSCCAG00000023476) #17	CXorf38 (ENSCCAG00000026604) #19	MED14 (ENSCCAG00000028557) #20	ENSCCAG00000009054	ENSCCAG00000013484 #21	ENSCCAG00000027958	DDX3X (ENSCCAG00000023934) #22	NYX (ENSCCAG00000036995) #23	CASK (ENSCCAG00000033169) #26
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	51	RPGR (ENSSBOG00000022649) #9	OTC (ENSSBOG00000029990) #10	TSPAN7 (ENSSBOG00000020077) #12	ENSSBOG00000034245	MID1IP1 (ENSSBOG00000010248) #13	BCOR (ENSSBOG00000016929) #15	ATP6AP2 (ENSSBOG00000032565) #17	ENSSBOG00000034566 #19	MED14 (ENSSBOG00000035627) #20	ENSSBOG00000027711	USP9X (ENSSBOG00000031035) #21	ENSSBOG00000026638	ENSSBOG00000026314	ENSSBOG00000034438	ENSSBOG00000024292	ENSSBOG00000019095 #22	NYX (ENSSBOG00000003432) #23	GPR34 (ENSSBOG00000018759) #24	CASK (ENSSBOG00000024108) #26	ENSSBOG00000004894	ENSSBOG00000016740	ENSSBOG00000027708	ATOH1 (ENSSBOG00000019286)	ENSSBOG00000025440	GRID2 (ENSSBOG00000035561)	ENSSBOG00000025569	CCSER1 (ENSSBOG00000019787)	MMRN1 (ENSSBOG00000028948)	SNCA (ENSSBOG00000020497)	TIGD2 (ENSSBOG00000018539)	FAM13A (ENSSBOG00000022461)
Bolivian squirrel monkey	MODERN SPECIES	173								ENSSBOG00000021777	ENSSBOG00000024192	ZFHX4 (ENSSBOG00000026983)	HNF4G (ENSSBOG00000019313)	CRISPLD1 (ENSSBOG00000029446)	PI15 (ENSSBOG00000020166)	GDAP1 (ENSSBOG00000034531)	JPH1 (ENSSBOG00000027296)	ENSSBOG00000025327 #22	LY96 (ENSSBOG00000030931)	TMEM70 (ENSSBOG00000024326)	ENSSBOG00000024839	ENSSBOG00000023589	UBE2W (ENSSBOG00000025584)	YWHAZ (ENSSBOG00000021820)	ENSSBOG00000028133	ZNF706 (ENSSBOG00000024116)	GRHL2 (ENSSBOG00000011137)	NCALD (ENSSBOG00000025321)	RRM2B (ENSSBOG00000000785)	UBR5 (ENSSBOG00000025123)	ODF1 (ENSSBOG00000021534)	KLF10 (ENSSBOG00000022422)	AZIN1 (ENSSBOG00000012314)
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	6	ENSCJAG00000075959	BBX (ENSCJAG00000004843)	ENSCJAG00000073698	CD47 (ENSCJAG00000004949)	IFT57 (ENSCJAG00000004974)	HHLA2 (ENSCJAG00000064010)	MYH15 (ENSCJAG00000005009)	ENSCJAG00000080097	ENSCJAG00000034586	CIP2A (ENSCJAG00000005069)	DZIP3 (ENSCJAG00000005143)	TRAT1 (ENSCJAG00000020142)	GUCA1C (ENSCJAG00000082320)	MORC1 (ENSCJAG00000020148)	C3orf85 (ENSCJAG00000038975)	ENSCJAG00000063364 #22	ENSCJAG00000074805	DPPA2 (ENSCJAG00000020168)	DPPA4 (ENSCJAG00000082442)	ENSCJAG00000070328	ENSCJAG00000075140	ENSCJAG00000083379	NECTIN3 (ENSCJAG00000020182)	ZBED2 (ENSCJAG00000067137)	PHLDB2 (ENSCJAG00000020212)	ABHD10 (ENSCJAG00000020230)	TAGLN3 (ENSCJAG00000020237)	TMPRSS7 (ENSCJAG00000020242)	ENSCJAG00000020245	ENSCJAG00000075721	ENSCJAG00000009946
Marmoset	MODERN SPECIES	78	RPGR (ENSCJAG00000020771) #9	OTC (ENSCJAG00000020777) #10	ENSCJAG00000054093	TSPAN7 (ENSCJAG00000000758) #12	MID1IP1 (ENSCJAG00000042767) #13	BCOR (ENSCJAG00000003758) #15	ATP6AP2 (ENSCJAG00000003800) #17	MPC1L (ENSCJAG00000043940) #18	CXorf38 (ENSCJAG00000047750) #19	ENSCJAG00000084787	ENSCJAG00000084856	ENSCJAG00000075384	ENSCJAG00000078955	ENSCJAG00000083416	USP9X (ENSCJAG00000004005) #21	ENSCJAG00000015787 #22	ENSCJAG00000070284	ENSCJAG00000073650	NYX (ENSCJAG00000009048) #23	ENSCJAG00000073156	CASK (ENSCJAG00000008892) #26	GPR34 (ENSCJAG00000064019) #24	ENSCJAG00000083294	MAOA (ENSCJAG00000043444) #30	MAOB (ENSCJAG00000010763) #31	ENSCJAG00000058192	ENSCJAG00000010835	EFHC2 (ENSCJAG00000010837) #35	ENSCJAG00000083265	FUNDC1 (ENSCJAG00000042445) #36	ENSCJAG00000061399
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00390000018039.f	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b #36
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153112.D.n.a.a.a.b.c	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m.a	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00390000018039.f	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00940000155616.c.b #34
Gibbon	MODERN SPECIES	449	TSPAN7 (ENSNLEG00000032727) #12	MID1IP1 (ENSNLEG00000034964) #13	ENSNLEG00000033266	BCOR (ENSNLEG00000001372) #15	ENSNLEG00000001433	ATP6AP2 (ENSNLEG00000001441) #17	MPC1L (ENSNLEG00000019041) #18	CXorf38 (ENSNLEG00000001550) #19	MED14 (ENSNLEG00000001575) #20	ENSNLEG00000030923	ENSNLEG00000028978	ENSNLEG00000030171	ENSNLEG00000030859	ENSNLEG00000032912	USP9X (ENSNLEG00000001837) #21	DDX3X (ENSNLEG00000001876) #22	ENSNLEG00000001923	NYX (ENSNLEG00000001945) #23	GPR82 (ENSNLEG00000002258) #25	CASK (ENSNLEG00000001954) #26	ENSNLEG00000028592	ENSNLEG00000027452	MAOA (ENSNLEG00000002271) #30	MAOB (ENSNLEG00000002389) #31	ENSNLEG00000036149 #33	ENSNLEG00000036235	ENSNLEG00000031843	ENSNLEG00000035492	FUNDC1 (ENSNLEG00000002513) #36	ENSNLEG00000034223	KDM6A (ENSNLEG00000002537)
Hominidae	ANCESTRAL SPECIES	8	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153112.D.n.a.a.a.b.c	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m.a	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b #36
Orangutan	MODERN SPECIES	242	SYTL5 (ENSPPYG00000020243) #8	SRPX (ENSPPYG00000020244)	ENSPPYG00000020245 #9	OTC (ENSPPYG00000020246) #10	TSPAN7 (ENSPPYG00000020247) #12	ENSPPYG00000038144	ENSPPYG00000035758	BCOR (ENSPPYG00000020250) #15	ENSPPYG00000031470	ATP6AP2 (ENSPPYG00000020251) #17	MPC1L (ENSPPYG00000020252) #18	CXorf38 (ENSPPYG00000020253) #19	MED14 (ENSPPYG00000020254) #20	ENSPPYG00000020255	USP9X (ENSPPYG00000020256) #21	DDX3X (ENSPPYG00000020257) #22	NYX (ENSPPYG00000020258) #23	CASK (ENSPPYG00000020259) #26	GPR34 (ENSPPYG00000020260) #24	GPR82 (ENSPPYG00000020261) #25	PPP1R2C (ENSPPYG00000020262) #28	MAOA (ENSPPYG00000020263) #30	MAOB (ENSPPYG00000020264) #31	NDP (ENSPPYG00000039194) #32	EFHC2 (ENSPPYG00000020266) #35	ENSPPYG00000020267 #34	FUNDC1 (ENSPPYG00000020268) #36	DUSP21 (ENSPPYG00000020269)	KDM6A (ENSPPYG00000020270)	DIPK2B (ENSPPYG00000038169)	ENSPPYG00000037122
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153112.D.n.a.a.a.b.c	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m.a	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b
Gorilla	MODERN SPECIES	523	ENSGGOG00000042064	BCOR (ENSGGOG00000014889) #15	IMPDH (ENSGGOG00000040015)	ATP6AP2 (ENSGGOG00000000532) #17	CXorf38 (ENSGGOG00000013906) #19	MED14 (ENSGGOG00000004125) #20	ENSGGOG00000042324	ENSGGOG00000043097	ENSGGOG00000024940	ENSGGOG00000037299	ENSGGOG00000024562	USP9X (ENSGGOG00000004363) #21	ENSGGOG00000039583	ENSGGOG00000043505	ENSGGOG00000043590	DDX3X (ENSGGOG00000003181) #22	NYX (ENSGGOG00000008559) #23	ENSGGOG00000025251	CASK (ENSGGOG00000007796) #26	ENSGGOG00000040501	ENSGGOG00000039857	GPR82 (ENSGGOG00000003785) #25	ENSGGOG00000042444	PPP1R2C (ENSGGOG00000038310) #28	ENSGGOG00000041784	ENSGGOG00000023963	MAOA (ENSGGOG00000008930) #30	MAOB (ENSGGOG00000000204) #31	NDP (ENSGGOG00000013536) #32	ENSGGOG00000036253	EFHC2 (ENSGGOG00000012642) #35
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153112.D.n.a.a.a.b.c	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m.a	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b #36
Pan	ANCESTRAL SPECIES	6	ENSGT00940000153112.D.n.a.a.a.b.c	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m.a	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.a	ENSGT00940000155017.z.b.a	ENSGT00940000155375.c #21	ENSGT00910000146883.C	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000154156.d.m.b	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00940000154517.f #36	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b
Chimpanzee	MODERN SPECIES	972	ENSPTRG00000039246	BCOR (ENSPTRG00000021802) #15	ENSPTRG00000052101	ATP6AP2 (ENSPTRG00000021803) #17	MPC1L (ENSPTRG00000048113) #18	CXHXorf38 (ENSPTRG00000021804) #19	MED14 (ENSPTRG00000021805) #20	ENSPTRG00000045194	ENSPTRG00000040752	ENSPTRG00000044764	ENSPTRG00000044980	ENSPTRG00000042923	ENSPTRG00000045378	USP9X (ENSPTRG00000045541) #21	ENSPTRG00000042802	DDX3X (ENSPTRG00000049651) #22	NYX (ENSPTRG00000021811) #23	CASK (ENSPTRG00000021812) #26	GPR82 (ENSPTRG00000021814) #25	ENSPTRG00000047656	PPP1R2C (ENSPTRG00000043024) #28	ENSPTRG00000052003	ENSPTRG00000045828	MAOA (ENSPTRG00000021816) #30	MAOB (ENSPTRG00000021817) #31	NDP (ENSPTRG00000021818) #32	ENSPTRG00000049437	EFHC2 (ENSPTRG00000021820) #35	ENSPTRG00000011647	ENSPTRG00000051846	FUNDC1 (ENSPTRG00000044012) #36
Bonobo	MODERN SPECIES	369	TSPAN7 (ENSPPAG00000011857) #12	MID1IP1 (ENSPPAG00000010366) #13	ENSPPAG00000030291	BCOR (ENSPPAG00000027608) #15	ENSPPAG00000009962	ATP6AP2 (ENSPPAG00000039969) #17	MPC1L (ENSPPAG00000019631) #18	CXorf38 (ENSPPAG00000044103) #19	MED14 (ENSPPAG00000044133) #20	ENSPPAG00000040577	ENSPPAG00000041897	ENSPPAG00000028929	ENSPPAG00000042937	USP9X (ENSPPAG00000039671) #21	ENSPPAG00000037641	DDX3X (ENSPPAG00000041809) #22	ENSPPAG00000028671 #23	ENSPPAG00000032293	CASK (ENSPPAG00000039799) #26	GPR82 (ENSPPAG00000032725) #25	PPP1R2C (ENSPPAG00000026223) #28	ENSPPAG00000043152	ENSPPAG00000036386	MAOA (ENSPPAG00000033045) #30	MAOB (ENSPPAG00000033577) #31	NDP (ENSPPAG00000028724) #32	ENSPPAG00000041179	EFHC2 (ENSPPAG00000037009) #35	ENSPPAG00000028416	ENSPPAG00000035654	FUNDC1 (ENSPPAG00000030690) #36
Human	MODERN SPECIES	1827	DYNLT3 (ENSG00000165169) #7	H2AP (ENSG00000187516)	H2AL3 (ENSG00000229674)	SYTL5 (ENSG00000147041) #8	SRPX (ENSG00000101955)	RPGR (ENSG00000156313) #9	OTC (ENSG00000036473) #10	TSPAN7 (ENSG00000156298) #12	MID1IP1 (ENSG00000165175) #13	BCOR (ENSG00000183337) #15	ATP6AP2 (ENSG00000182220) #17	MPC1L (ENSG00000238205) #18	CXorf38 (ENSG00000185753) #19	MED14 (ENSG00000180182) #20	USP9X (ENSG00000124486) #21	DDX3X (ENSG00000215301) #22	NYX (ENSG00000188937) #23	CASK (ENSG00000147044) #26	GPR34 (ENSG00000171659) #24	GPR82 (ENSG00000171657) #25	PPP1R2C (ENSG00000102055) #28	MAOA (ENSG00000189221) #30	MAOB (ENSG00000069535) #31	NDP (ENSG00000124479) #32	EFHC2 (ENSG00000183690) #35	FUNDC1 (ENSG00000069509) #36	DUSP21 (ENSG00000189037)	KDM6A (ENSG00000147050)	DIPK2B (ENSG00000147113)	KRBOX4 (ENSG00000147121)	ZNF674 (ENSG00000251192)
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00390000018039.f	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b.b #36
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00390000018039.f	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b.b #36
Vervet Monkey	MODERN SPECIES	203	ENSCSAG00000014121	FAM47A (ENSCSAG00000019554)	TMEM47 (ENSCSAG00000014086)	FAM47B (ENSCSAG00000019555)	ENSCSAG00000014077	ENSCSAG00000014059	ENSCSAG00000019556	OTC (ENSCSAG00000014036) #10	TSPAN7 (ENSCSAG00000014026) #12	MID1IP1 (ENSCSAG00000019557) #13	BCOR (ENSCSAG00000014010) #15	ATP6AP2 (ENSCSAG00000014001) #17	CXorf38 (ENSCSAG00000013994) #19	MED14 (ENSCSAG00000013987) #20	USP9X (ENSCSAG00000013968) #21	DDX3X (ENSCSAG00000013949) #22	NYX (ENSCSAG00000019558) #23	GPR34 (ENSCSAG00000019559) #24	GPR82 (ENSCSAG00000019560) #25	MAOA (ENSCSAG00000013943) #30	MAOB (ENSCSAG00000013934) #31	NDP (ENSCSAG00000013927) #32	EFHC2 (ENSCSAG00000013922) #35	ENSCSAG00000013885	DUSP21 (ENSCSAG00000019561)	KDM6A (ENSCSAG00000013878)	DIPK2B (ENSCSAG00000013866)	ENSCSAG00000013852	ENSCSAG00000019562	CHST7 (ENSCSAG00000019563)	SLC9A7 (ENSCSAG00000013816)
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00390000018039.f	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000157455.i.a.b	ENSGT00390000013593.h	ENSGT00940000157062.l	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT00990000203619.A.a #25	ENSGT00940000157455.i.a.b	ENSGT00390000013593.h	ENSGT00940000157062.l	ENSGT00670000098076.i.b
Cercopithecinae_d	ANCESTRAL SPECIES	164	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT00990000203619.A.a #25	ENSGT00940000157455.i.a.b	ENSGT00390000013593.h	ENSGT00940000157062.l	ENSGT00670000098076.i.b
Drill	MODERN SPECIES	781	TSPAN7 (ENSMLEG00000041757) #12	ENSMLEG00000024060	BCOR (ENSMLEG00000027853) #15	ENSMLEG00000043129	ATP6AP2 (ENSMLEG00000029677) #17	MPC1L (ENSMLEG00000033791) #18	CXorf38 (ENSMLEG00000029318) #19	MED14 (ENSMLEG00000037310) #20	ENSMLEG00000030436	ENSMLEG00000035769	ENSMLEG00000041667	ENSMLEG00000041765	ENSMLEG00000011061	USP9X (ENSMLEG00000029360) #21	ENSMLEG00000003594	DDX3X (ENSMLEG00000044178) #22	NYX (ENSMLEG00000043211) #23	ENSMLEG00000029956	CASK (ENSMLEG00000030546) #26	GPR82 (ENSMLEG00000026691) #25	ENSMLEG00000040190	ENSMLEG00000032902	ENSMLEG00000004115	ENSMLEG00000024931
Sooty mangabey	MODERN SPECIES	233	OTC (ENSCATG00000040927) #10	TSPAN7 (ENSCATG00000040622) #12	MID1IP1 (ENSCATG00000019429) #13	BCOR (ENSCATG00000035858) #15	ENSCATG00000034650	ATP6AP2 (ENSCATG00000033182) #17	MPC1L (ENSCATG00000040875) #18	CXorf38 (ENSCATG00000005533) #19	MED14 (ENSCATG00000015139) #20	ENSCATG00000039475	ENSCATG00000035935	ENSCATG00000002218	ENSCATG00000013830	USP9X (ENSCATG00000045108) #21	ENSCATG00000020614	DDX3X (ENSCATG00000010148) #22	NYX (ENSCATG00000038924) #23	ENSCATG00000029958	CASK (ENSCATG00000043780) #26	GPR82 (ENSCATG00000019769) #25	ENSCATG00000040782	ENSCATG00000009201	ENSCATG00000020797	ENSCATG00000037421
Olive baboon	MODERN SPECIES	792	TSPAN7 (ENSPANG00000001627) #12	MID1IP1 (ENSPANG00000010851) #13	ENSPANG00000049183	BCOR (ENSPANG00000023328) #15	ENSPANG00000003221	ATP6AP2 (ENSPANG00000009876) #17	CXorf38 (ENSPANG00000009515) #19	MED14 (ENSPANG00000024675) #20	ENSPANG00000043492	ENSPANG00000010629	ENSPANG00000040156	ENSPANG00000049298	USP9X (ENSPANG00000009041) #21	ENSPANG00000050425	ENSPANG00000050530	DDX3X (ENSPANG00000023917) #22	ENSPANG00000011805	NYX (ENSPANG00000009956) #23	GPR34 (ENSPANG00000015410) #24	GPR82 (ENSPANG00000010850) #25	CASK (ENSPANG00000008102) #26	PPP1R2C (ENSPANG00000049960) #28	ENSPANG00000037030	ENSPANG00000008948	ENSPANG00000032233	MAOB (ENSPANG00000025805) #31	MAOA (ENSPANG00000025811) #30	NDP (ENSPANG00000040730) #32	ENSPANG00000035225	EFHC2 (ENSPANG00000011868) #35	ENSPANG00000048506
Macaca	ANCESTRAL SPECIES	13	ENSGT00940000156153 #12	ENSGT00910000146737	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00910000147092	ENSGT00940000164052.d	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000154502.g.a.a	ENSGT00940000155017.y.a	ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000157455.i.a.b	ENSGT00390000013593.h	ENSGT00940000157062.l	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35
Pig-tailed macaque	MODERN SPECIES	84	TSPAN7 (ENSMNEG00000019779) #12	ENSMNEG00000038527	BCOR (ENSMNEG00000026958) #15	ENSMNEG00000031193	ATP6AP2 (ENSMNEG00000006275) #17	MPC1L (ENSMNEG00000039097) #18	CXorf38 (ENSMNEG00000028665) #19	MED14 (ENSMNEG00000030935) #20	ENSMNEG00000037768	ENSMNEG00000031988	ENSMNEG00000039282	ENSMNEG00000040368	ENSMNEG00000034064	USP9X (ENSMNEG00000035247) #21	ENSMNEG00000014066	DDX3X (ENSMNEG00000031741) #22	ENSMNEG00000021429	NYX (ENSMNEG00000007266) #23	ENSMNEG00000033837	CASK (ENSMNEG00000038268) #26	GPR82 (ENSMNEG00000003045) #25	ENSMNEG00000018791	ENSMNEG00000030204	ENSMNEG00000019392	ENSMNEG00000041685	MAOA (ENSMNEG00000021428) #30	MAOB (ENSMNEG00000037209) #31	NDP (ENSMNEG00000037115) #32	EFHC2 (ENSMNEG00000034973) #35	ENSMNEG00000042224	ENSMNEG00000045393
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00500000044890.a.a #13	ENSGT00940000156153 #12	ENSGT00910000146737	ENSGT00940000153737.b #15	ENSGT00940000154156.d.m	ENSGT01030000240144	ENSGT00390000008856.i #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183077.a.a.a.a.a.b.b.a.b.b	ENSGT00940000155375.c #21	ENSGT00940000161627.b.a.b.b.a.a.a.b.a	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00670000098076.i.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000154468.hb.a	ENSGT00530000063528.B #35	ENSGT00390000013305.a.a.w.b	ENSGT00900000141074.e.a.b.a.b	ENSGT00940000154517.e.b.b #36	ENSGT00940000163638
Crab-eating macaque	MODERN SPECIES	175	OTC (ENSMFAG00000040619) #10	ENSMFAG00000051264	TSPAN7 (ENSMFAG00000002802) #12	ENSMFAG00000049434	ENSMFAG00000059834	ENSMFAG00000056528	ENSMFAG00000019253	BCOR (ENSMFAG00000042404) #15	ENSMFAG00000003022	ENSMFAG00000055028	ATP6AP2 (ENSMFAG00000038545) #17	MED14 (ENSMFAG00000000690) #20	ENSMFAG00000016940	USP9X (ENSMFAG00000025475) #21	ENSMFAG00000061620	DDX3X (ENSMFAG00000034876) #22	ENSMFAG00000035536 #26	GPR34 (ENSMFAG00000031644) #24	GPR82 (ENSMFAG00000023715) #25	ENSMFAG00000058195 #26	PPP1R2C (ENSMFAG00000064193) #28	ENSMFAG00000056067	ENSMFAG00000030357	MAOA (ENSMFAG00000041722) #30	MAOB (ENSMFAG00000040990) #31	NDP (ENSMFAG00000000487) #32	ENSMFAG00000059305	EFHC2 (ENSMFAG00000032590) #35	ENSMFAG00000033472	ENSMFAG00000061927	ENSMFAG00000051011
Rhesus	MODERN SPECIES	327	ENSMMUG00000013491 #9	OTC (ENSMMUG00000013493) #10	MID1IP1 (ENSMMUG00000003201) #13	ENSMMUG00000060266	BCOR (ENSMMUG00000005292) #15	ENSMMUG00000000710	ENSMMUG00000063543	ATP6AP2 (ENSMMUG00000012762) #17	MPC1L (ENSMMUG00000045877) #18	CXHXorf38 (ENSMMUG00000005263) #19	MED14 (ENSMMUG00000005264) #20	ENSMMUG00000055801	ENSMMUG00000053153	USP9X (ENSMMUG00000013753) #21	ENSMMUG00000063721	DDX3X (ENSMMUG00000017569) #22	ENSMMUG00000055907	NYX (ENSMMUG00000005304) #23	CASK (ENSMMUG00000022578) #26	GPR34 (ENSMMUG00000022583) #24	GPR82 (ENSMMUG00000022584) #25	PPP1R2C (ENSMMUG00000022734) #28	ENSMMUG00000056191	MAOA (ENSMMUG00000019489) #30	MAOB (ENSMMUG00000019492) #31	NDP (ENSMMUG00000018001) #32	EFHC2 (ENSMMUG00000016391) #35	ENSMMUG00000051500	FUNDC1 (ENSMMUG00000003505) #36	DUSP21 (ENSMMUG00000015266)	KDM6A (ENSMMUG00000003317)
Rhinopithecus	ANCESTRAL SPECIES	659														ENSGT00940000155375.c #21	ENSGT00530000064570.d	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000018039.f	ENSGT00940000155600.b #26
Golden snub-nosed monkey	MODERN SPECIES	1439														ENSRROG00000035055 #21	ENSRROG00000024930	DDX3X (ENSRROG00000030233) #22	NYX (ENSRROG00000036403) #23	ENSRROG00000040650	CASK (ENSRROG00000036502) #26	ENSRROG00000032990	ENSRROG00000037594	GPR82 (ENSRROG00000017037) #25
Black snub-nosed monkey	MODERN SPECIES	499																DDX3X (ENSRBIG00000042259) #22
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5729																DDX3X (ENSTSYG00000003895) #22	ENSTSYG00000026785	CASK (ENSTSYG00000007955) #26
Tarsier	MODERN SPECIES	4728																ENSTSYG00000029157 #22
Laurasiatheria	ANCESTRAL SPECIES	16	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00900000143309	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154443.b.a #22
Hedgehog	MODERN SPECIES	13428																DDX3X (ENSEEUG00000002817) #22
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00940000163202	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000154679.yb.a.a.b
Suina	ANCESTRAL SPECIES	7	ENSGT00940000155009 #7	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Chacoan peccary	MODERN SPECIES	107	DYNLT3 (ENSCWAG00000015552) #7	ENSCWAG00000015537	SYTL5 (ENSCWAG00000015258) #8	SRPX (ENSCWAG00000015090)	ENSCWAG00000015040 #9	OTC (ENSCWAG00000014946) #10	TSPAN7 (ENSCWAG00000014915) #12	MID1IP1 (ENSCWAG00000014895) #13	BCOR (ENSCWAG00000014765) #15	ENSCWAG00000014416 #17	ENSCWAG00000014300 #18	CXorf38 (ENSCWAG00000014219) #19	MED14 (ENSCWAG00000013978) #20	USP9X (ENSCWAG00000013600) #21	ENSCWAG00000013536	DDX3X (ENSCWAG00000013025) #22	NYX (ENSCWAG00000012958) #23	GPR34 (ENSCWAG00000012940) #24	GPR82 (ENSCWAG00000012925) #25	CASK (ENSCWAG00000012127) #26	ENSCWAG00000012037	ENSCWAG00000012006	ENSCWAG00000011966	ENSCWAG00000011927 #28	ENSCWAG00000011901	ENSCWAG00000011834	MAOA (ENSCWAG00000011762) #30	MAOB (ENSCWAG00000011662) #31	NDP (ENSCWAG00000011633) #32	ENSCWAG00000011610	ENSCWAG00000011594 #34
Pig	MODERN SPECIES	300	ENSSSCG00000012235 #9	ENSSSCG00000050812	OTC (ENSSSCG00000012236) #10	ENSSSCG00000056736	TSPAN7 (ENSSSCG00000012238) #12	ENSSSCG00000057929	MID1IP1 (ENSSSCG00000025447) #13	BCOR (ENSSSCG00000012241) #15	ATP6AP2 (ENSSSCG00000012247) #17	MPC1L (ENSSSCG00000012248) #18	CXorf38 (ENSSSCG00000012249) #19	MED14 (ENSSSCG00000012250) #20	ENSSSCG00000056852	ENSSSCG00000053694	USP9X (ENSSSCG00000012251) #21	DDX3X (ENSSSCG00000012252) #22	NYX (ENSSSCG00000021460) #23	CASK (ENSSSCG00000012253) #26	GPR34 (ENSSSCG00000022309) #24	GPR82 (ENSSSCG00000012254) #25	ENSSSCG00000046344 #28	ENSSSCG00000012257 #30	MAOB (ENSSSCG00000023215) #31	NDP (ENSSSCG00000029656) #32	EFHC2 (ENSSSCG00000021846) #35	ENSSSCG00000023007 #34	FUNDC1 (ENSSSCG00000012258) #36	ENSSSCG00000023500	KDM6A (ENSSSCG00000012262)	DIPK2B (ENSSSCG00000026984)	ENSSSCG00000012264
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000154679.yb.a.a.b
Artiodactyla_b	ANCESTRAL SPECIES	24	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000154679.yb.a.a.b
Pecora	ANCESTRAL SPECIES	34	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Yarkand deer	MODERN SPECIES	1323	DYNLT3 (ENSCHYG00000024212) #7	ENSCHYG00000024198	SYTL5 (ENSCHYG00000024135) #8	ENSCHYG00000023658 #9	OTC (ENSCHYG00000023594) #10	ENSCHYG00000023583	TSPAN7 (ENSCHYG00000023486) #12	MID1IP1 (ENSCHYG00000023473) #13	ENSCHYG00000023432	BCOR (ENSCHYG00000023328) #15	ENSCHYG00000023066 #17	MPC1L (ENSCHYG00000023023) #18	CXorf38 (ENSCHYG00000022966) #19	MED14 (ENSCHYG00000022394) #20	USP9X (ENSCHYG00000022165) #21	DDX3X (ENSCHYG00000022010) #22	ENSCHYG00000021990	ENSCHYG00000021956	NYX (ENSCHYG00000021892) #23	GPR34 (ENSCHYG00000021879) #24	GPR82 (ENSCHYG00000021859) #25	CASK (ENSCHYG00000020609) #26	ENSCHYG00000020427 #28	ENSCHYG00000020396	ENSCHYG00000020373	MAOA (ENSCHYG00000020167) #30	MAOB (ENSCHYG00000020035) #31	NDP (ENSCHYG00000019992) #32	ENSCHYG00000019980 #34	ENSCHYG00000019917 #35	FUNDC1 (ENSCHYG00000019848) #36
Percora_a	ANCESTRAL SPECIES	22	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	92	SYTL5 (ENSMMSG00000008508) #8	SRPX (ENSMMSG00000008427)	ENSMMSG00000008393 #9	OTC (ENSMMSG00000008328) #10	ENSMMSG00000008301	ENSMMSG00000008279 #12	MID1IP1 (ENSMMSG00000008268) #13	BCOR (ENSMMSG00000008193) #15	ENSMMSG00000015149	ENSMMSG00000014938 #17	MPC1L (ENSMMSG00000014899) #18	CXorf38 (ENSMMSG00000014873) #19	MED14 (ENSMMSG00000014735) #20	USP9X (ENSMMSG00000014689) #21	ENSMMSG00000014674	ENSMMSG00000011570 #22	NYX (ENSMMSG00000011402) #23	GPR82 (ENSMMSG00000011393) #25	CASK (ENSMMSG00000010789) #26	ENSMMSG00000010690 #28	MAOA (ENSMMSG00000010581) #30	MAOB (ENSMMSG00000010531) #31	NDP (ENSMMSG00000010499) #32	EFHC2 (ENSMMSG00000010377) #35	ENSMMSG00000010354 #34
Siberian musk deer	MODERN SPECIES	104	DBN1 (ENSMMSG00000018153)	PDLIM7 (ENSMMSG00000018309)	DOK3 (ENSMMSG00000018556)	DDX41 (ENSMMSG00000018580)	FAM193B (ENSMMSG00000018635)	ENSMMSG00000018675	ENSMMSG00000018697	TMED9 (ENSMMSG00000018716)	B4GALT7 (ENSMMSG00000018741)	N4BP3 (ENSMMSG00000018756)	RMND5B (ENSMMSG00000018779)	NHP2 (ENSMMSG00000018825)	HNRNPAB (ENSMMSG00000018883)	PHYKPL (ENSMMSG00000018951)	COL23A1 (ENSMMSG00000019038)	ENSMMSG00000019205 #22	ENSMMSG00000019271
Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000165666	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a #36	ENSGT00940000161186.B	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000162492.w	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000165666	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a #36	ENSGT00530000063528.B #35	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Bos	ANCESTRAL SPECIES	32	ENSGT00940000162492.w	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000165666	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517.gb.a.b #36	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a.a.a #36	ENSGT00390000008828.h	ENSGT00940000163638	ENSGT00940000155202.i.b
Bos_b	DUPLICATION
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000162492.w	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000183010.a.b.a.b.b.a.a.b	ENSGT00940000155375.c #21	ENSGT00940000165666	ENSGT00940000154443.b.a.jb #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a.a.a #36	ENSGT00390000008828.h	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Cow	MODERN SPECIES	177	ENSBTAG00000045867 #9	OTC (ENSBTAG00000001488) #10	ENSBTAG00000046998 #11	ENSBTAG00000053054	TSPAN7 (ENSBTAG00000008966) #12	MID1IP1 (ENSBTAG00000011463) #13	BCOR (ENSBTAG00000047339) #15	ATP6AP2 (ENSBTAG00000017801) #17	MPC1L (ENSBTAG00000011783) #18	CXHXorf38 (ENSBTAG00000011788) #19	MED14 (ENSBTAG00000011790) #20	ENSBTAG00000030490	ENSBTAG00000049862	USP9X (ENSBTAG00000006242) #21	ENSBTAG00000053853	DDX3X (ENSBTAG00000035907) #22	NYX (ENSBTAG00000046407) #23	GPR34 (ENSBTAG00000020144) #24	GPR82 (ENSBTAG00000045934) #25	CASK (ENSBTAG00000020136) #26	PPP1R2C (ENSBTAG00000037883) #28	MAOA (ENSBTAG00000016206) #30	MAOB (ENSBTAG00000001288) #31	ENSBTAG00000055248	NDP (ENSBTAG00000012623) #32	EFHC2 (ENSBTAG00000053072) #35	FUNDC1 (ENSBTAG00000001637) #36	ENSBTAG00000046794	DUSP21 (ENSBTAG00000001809)	KDM6A (ENSBTAG00000003740)	DIPK2B (ENSBTAG00000020717)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005018003 #9	OTC (ENSBIXG00005017899) #10	TSPAN7 (ENSBIXG00005017860) #12	ENSBIXG00005002892	MID1IP1 (ENSBIXG00005017816) #13	BCOR (ENSBIXG00005017741) #15	ENSBIXG00005017652	ENSBIXG00005017517 #17	ENSBIXG00005017292 #18	CXorf38 (ENSBIXG00005017280) #19	MED14 (ENSBIXG00005017250) #20	ENSBIXG00005017168	USP9X (ENSBIXG00005017112) #21	ENSBIXG00005017068	ENSBIXG00005017050	ENSBIXG00005016992 #22	NYX (ENSBIXG00005016606) #23	CASK (ENSBIXG00005016500) #26	GPR34 (ENSBIXG00005016346) #24	GPR82 (ENSBIXG00005000078) #25	ENSBIXG00005002595 #28	ENSBIXG00005016263 #30	MAOB (ENSBIXG00005016178) #31	ENSBIXG00005016094	NDP (ENSBIXG00005016079) #32	EFHC2 (ENSBIXG00005016054) #35	ENSBIXG00005016036 #34	ENSBIXG00005016029 #36	ENSBIXG00005015999	DUSP21 (ENSBIXG00005015991)	KDM6A (ENSBIXG00005015947)
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154443.b.a.kb #22
Hybrid Bos Indicus	MODERN SPECIES	24			ENSBIXG00005029959	ENSBIXG00005029944	TSPAN8 (ENSBIXG00005029895)	ENSBIXG00005029876	ZFC3H1 (ENSBIXG00005029844)	THAP2 (ENSBIXG00005029823)	TMEM19 (ENSBIXG00005029810)	ENSBIXG00005029792	TBC1D15 (ENSBIXG00005029740)	TPH2 (ENSBIXG00005029698)	ENSBIXG00005029683	TRHDE (ENSBIXG00005029642)	ATXN7L3B (ENSBIXG00005029601)	ENSBIXG00005029561 #22	KCNC2 (ENSBIXG00005029515)	CAPS2 (ENSBIXG00005029482)	GLIPR1L1 (ENSBIXG00005029466)	ENSBIXG00005029442	GLIPR1 (ENSBIXG00005029431)	KRR1 (ENSBIXG00005029408)	ENSBIXG00005029389	PHLDA1 (ENSBIXG00005029359)	ENSBIXG00005029325	BBS10 (ENSBIXG00005029298)	ENSBIXG00005029293	OSBPL8 (ENSBIXG00005007884)	ZDHHC17 (ENSBIXG00005000041)	CSRP2 (ENSBIXG00005007979)	E2F7 (ENSBIXG00005008016)
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000162492.w	ENSGT00940000158618 #8	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000013208.nb	ENSGT00390000018390.fb	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00940000155616.c.b #34	ENSGT00530000063528.B #35	ENSGT00940000154517.gb.a.b #36	ENSGT00940000154517.gb.a.a.a #36	ENSGT00390000008828.h	ENSGT00940000163638	ENSGT00940000155202.i.b
Wild yak	MODERN SPECIES	231	ENSBMUG00000010733	ENSBMUG00000010833 #9	OTC (ENSBMUG00000010860) #10	ENSBMUG00000010865 #11	TSPAN7 (ENSBMUG00000010880) #12	MID1IP1 (ENSBMUG00000010893) #13	BCOR (ENSBMUG00000010961) #15	ENSBMUG00000010978	ENSBMUG00000010990	ENSBMUG00000011085 #17	ENSBMUG00000011102 #18	CXorf38 (ENSBMUG00000011127) #19	MED14 (ENSBMUG00000011761) #20	USP9X (ENSBMUG00000012333) #21	ENSBMUG00000012360	DDX3X (ENSBMUG00000012662) #22
Domestic yak	MODERN SPECIES	69	ENSBGRG00000022166	SYTL5 (ENSBGRG00000021997) #8	ENSBGRG00000021428	OTC (ENSBGRG00000021238) #10	ENSBGRG00000021188	TSPAN7 (ENSBGRG00000021078) #12	MID1IP1 (ENSBGRG00000021050) #13	ENSBGRG00000020948 #15	ENSBGRG00000020907	ENSBGRG00000019474 #17	ENSBGRG00000019336 #18	CXorf38 (ENSBGRG00000019239) #19	MED14 (ENSBGRG00000018963) #20	ENSBGRG00000018910	USP9X (ENSBGRG00000018694) #21	DDX3X (ENSBGRG00000015328) #22	NYX (ENSBGRG00000015080) #23	GPR34 (ENSBGRG00000015052) #24	CASK (ENSBGRG00000013967) #26	ENSBGRG00000013880 #28	ENSBGRG00000013578 #30	MAOB (ENSBGRG00000012905) #31	NDP (ENSBGRG00000012838) #32	ENSBGRG00000012824 #34	EFHC2 (ENSBGRG00000012207) #35	FUNDC1 (ENSBGRG00000012105) #36	ENSBGRG00000012070	DUSP21 (ENSBGRG00000012043)	KDM6A (ENSBGRG00000010653)	DIPK2B (ENSBGRG00000010549)	ENSBGRG00000010500
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000154443.b.a.lb #22
Goat	MODERN SPECIES	100																ENSCHIG00000000047 #22
Caprinae	ANCESTRAL SPECIES	48	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00950000182841.b.a.a.a.d.b.a.a.a.b	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856.k #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000165666	ENSGT00940000154443.b.a.mb #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00390000001627.b	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.gb.a #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Goat	MODERN SPECIES	32													USP9X (ENSCHIG00000022050) #21	ENSCHIG00000014639	ENSCHIG00000020919	ENSCHIG00000024903 #22	ENSCHIG00000019877	NYX (ENSCHIG00000023683) #23	CASK (ENSCHIG00000015457) #26	ENSCHIG00000018671	GPR34 (ENSCHIG00000007570) #24	GPR82 (ENSCHIG00000008685) #25
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020021165	ENSOARG00020021200	ENSOARG00020021214	OTC (ENSOARG00020021238) #10	ENSOARG00020021326	ENSOARG00020021363 #11	TSPAN7 (ENSOARG00020021392) #12	MID1IP1 (ENSOARG00020021499) #13	ENSOARG00020015318	BCOR (ENSOARG00020015351) #15	ENSOARG00020015636 #17	ENSOARG00020016210 #18	CXorf38 (ENSOARG00020016232) #19	MED14 (ENSOARG00020016379) #20	USP9X (ENSOARG00020017297) #21	DDX3X (ENSOARG00020017500) #22	NYX (ENSOARG00020018604) #23	CASK (ENSOARG00020018716) #26	GPR82 (ENSOARG00020019888) #25	ENSOARG00020019938 #28	ENSOARG00020019953	ENSOARG00020019978	MAOA (ENSOARG00020020034) #30	MAOB (ENSOARG00020020199) #31	NDP (ENSOARG00020020392) #32	ENSOARG00020020414 #34	FUNDC1 (ENSOARG00020020429) #36	ENSOARG00020020467	KDM6A (ENSOARG00020020551)	DIPK2B (ENSOARG00020021990)	ENSOARG00020022130
Cetacea	ANCESTRAL SPECIES	21	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000008496.j.b.b.b	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000153498.A.n	ENSGT00940000161186.B	ENSGT00940000155202.i.b
Blue whale	MODERN SPECIES	40	XK (ENSBMSG00010015432)	CYBB (ENSBMSG00010015459)	DYNLT3 (ENSBMSG00010015528) #7	SYTL5 (ENSBMSG00010015570) #8	SRPX (ENSBMSG00010015775)	ENSBMSG00010015841 #9	OTC (ENSBMSG00010015883) #10	TSPAN7 (ENSBMSG00010015967) #12	MID1IP1 (ENSBMSG00010016089) #13	BCOR (ENSBMSG00010016120) #15	ENSBMSG00010016238 #17	ENSBMSG00010016374 #18	CXorf38 (ENSBMSG00010016418) #19	MED14 (ENSBMSG00010016504) #20	USP9X (ENSBMSG00010016782) #21	DDX3X (ENSBMSG00010016859) #22	ENSBMSG00010017095	NYX (ENSBMSG00010017109) #23	ENSBMSG00010017131	CASK (ENSBMSG00010017223) #26	ENSBMSG00010017550	GPR34 (ENSBMSG00010017560) #24	GPR82 (ENSBMSG00010017574) #25	ENSBMSG00010017593	ENSBMSG00010017638	ENSBMSG00010017659	ENSBMSG00010017689 #28	ENSBMSG00010017732	ENSBMSG00010017837	MAOA (ENSBMSG00010017862) #30	MAOB (ENSBMSG00010017968) #31
Odontoceti	ANCESTRAL SPECIES	22	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000008496.j.b.b.b	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000156461.b	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000153498.A.n	ENSGT00940000161186.B
Sperm whale	MODERN SPECIES	13	DYNLT3 (ENSPCTG00005018153) #7	SYTL5 (ENSPCTG00005018211) #8	ENSPCTG00005018307	SRPX (ENSPCTG00005018362)	ENSPCTG00005018504 #9	OTC (ENSPCTG00005018601) #10	TSPAN7 (ENSPCTG00005018713) #12	MID1IP1 (ENSPCTG00005018748) #13	BCOR (ENSPCTG00005018771) #15	ENSPCTG00005018851	ATP6AP2 (ENSPCTG00005018902) #17	MPC1L (ENSPCTG00005019188) #18	C21HXorf38 (ENSPCTG00005019204) #19	MED14 (ENSPCTG00005019253) #20	USP9X (ENSPCTG00005019450) #21	DDX3X (ENSPCTG00005019909) #22	NYX (ENSPCTG00005020229) #23	CASK (ENSPCTG00005020288) #26	GPR82 (ENSPCTG00005020637) #25	ENSPCTG00005020656	ENSPCTG00005020704 #28	ENSPCTG00005020757	ENSPCTG00005020767	MAOA (ENSPCTG00005020779) #30	MAOB (ENSPCTG00005020909) #31	NDP (ENSPCTG00005020930) #32	EFHC2 (ENSPCTG00005020961) #35	ENSPCTG00005021033	ENSPCTG00005021039 ##34	FUNDC1 (ENSPCTG00005021049) #36	ENSPCTG00005021071
Odontoceti_a	ANCESTRAL SPECIES	20	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000008496.j.b.b.b	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000156461.b	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000153498.A.n	ENSGT00940000161186.B
Dolphin	MODERN SPECIES	5227																DDX3X (ENSTTRG00000001906) #22	NYX (ENSTTRG00000001909) #23
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00390000001332.n	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000008496.j.b.b.b	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000156461.b	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00950000182802.A.bb	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.eb #36	ENSGT00940000153498.A.n
Vaquita	MODERN SPECIES	34	DYNLT3 (ENSPSNG00000020495) #7	ENSPSNG00000020516	SYTL5 (ENSPSNG00000020543) #8	ENSPSNG00000020588	SRPX (ENSPSNG00000020642)	ENSPSNG00000020756 #9	OTC (ENSPSNG00000020795) #10	TSPAN7 (ENSPSNG00000020865) #12	MID1IP1 (ENSPSNG00000020892) #13	BCOR (ENSPSNG00000020930) #15	ATP6AP2 (ENSPSNG00000021047) #17	ENSPSNG00000021202 #18	CXorf38 (ENSPSNG00000013381) #19	ENSPSNG00000013458 #20	USP9X (ENSPSNG00000013676) #21	DDX3X (ENSPSNG00000014476) #22	NYX (ENSPSNG00000014932) #23	ENSPSNG00000014987	CASK (ENSPSNG00000015050) #26	GPR82 (ENSPSNG00000015496) #25	ENSPSNG00000015528	ENSPSNG00000015618 #28	MAOA (ENSPSNG00000015774) #30	MAOB (ENSPSNG00000016109) #31	HMGN1 (ENSPSNG00000016153)	NDP (ENSPSNG00000016175) #32	EFHC2 (ENSPSNG00000016209) #35	FUNDC1 (ENSPSNG00000016438) #36	ENSPSNG00000016479	DUSP21 (ENSPSNG00000016528)	KDM6A (ENSPSNG00000016869)
Monodontidae	ANCESTRAL SPECIES	25	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00390000001332.n	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00390000008496.j.b.b.b	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000156461.b	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00950000182802.A.bb.k	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517.eb #36	ENSGT00940000153498.A.n
Narwhal	MODERN SPECIES	309	DYNLT3 (ENSMMNG00015009487) #7	SYTL5 (ENSMMNG00015009525) #8	ENSMMNG00015009557	SRPX (ENSMMNG00015009593)	RPGR (ENSMMNG00015009649) #9	OTC (ENSMMNG00015009674) #10	ENSMMNG00015009683 #11	TSPAN7 (ENSMMNG00015009703) #12	MID1IP1 (ENSMMNG00015009716) #13	BCOR (ENSMMNG00015009731) #15	ATP6AP2 (ENSMMNG00015009785) #17	ENSMMNG00015009857 #18	CXorf38 (ENSMMNG00015009866) #19	MED14 (ENSMMNG00015009892) #20	USP9X (ENSMMNG00015009970) #21	DDX3X (ENSMMNG00015010005) #22	ENSMMNG00015010041	NYX (ENSMMNG00015010048) #23	ENSMMNG00015010052	CASK (ENSMMNG00015010172) #26	GPR34 (ENSMMNG00015010454) #24	GPR82 (ENSMMNG00015010460) #25	ENSMMNG00015010495 #28	MAOA (ENSMMNG00015010524) #30	MAOB (ENSMMNG00015010558) #31	ENSMMNG00015010582	NDP (ENSMMNG00015010589) #32	EFHC2 (ENSMMNG00015010609) #35	FUNDC1 (ENSMMNG00015010659) #36	ENSMMNG00015010677	ENSMMNG00015010689
Beluga whale	MODERN SPECIES	58	DYNLT3 (ENSDLEG00000012975) #7	SYTL5 (ENSDLEG00000013025) #8	ENSDLEG00000013338	SRPX (ENSDLEG00000013368)	RPGR (ENSDLEG00000013393) #9	OTC (ENSDLEG00000013458) #10	TSPAN7 (ENSDLEG00000013478) #12	MID1IP1 (ENSDLEG00000013488) #13	BCOR (ENSDLEG00000013499) #15	ATP6AP2 (ENSDLEG00000013556) #17	ENSDLEG00000013589 #18	CUNHXorf38 (ENSDLEG00000013605) #19	MED14 (ENSDLEG00000013718) #20	USP9X (ENSDLEG00000014783) #21	ENSDLEG00000017591	DDX3X (ENSDLEG00000017612) #22	NYX (ENSDLEG00000017648) #23	CASK (ENSDLEG00000017934) #26	GPR82 (ENSDLEG00000019820) #25	ENSDLEG00000019826	ENSDLEG00000019829 #28	MAOA (ENSDLEG00000019834) #30	MAOB (ENSDLEG00000019843) #31	NDP (ENSDLEG00000019876) #32	EFHC2 (ENSDLEG00000019880) #35	ENSDLEG00000019897 #34	FUNDC1 (ENSDLEG00000019900) #36	ENSDLEG00000019905	ENSDLEG00000019909	KDM6A (ENSDLEG00000019918)	ENSDLEG00000019956
Camelidae	ANCESTRAL SPECIES	45	ENSGT00940000159699	ENSGT00940000162825	ENSGT00940000165165	ENSGT00940000162492	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00550000076437
Arabian camel	MODERN SPECIES	204	DYNLT3 (ENSCDRG00005019230) #7	SYTL5 (ENSCDRG00005019261) #8	ENSCDRG00005019328	SRPX (ENSCDRG00005019346)	ENSCDRG00005019467 #9	OTC (ENSCDRG00005019934) #10	ENSCDRG00005019945	TSPAN7 (ENSCDRG00005019956) #12	MID1IP1 (ENSCDRG00005019974) #13	BCOR (ENSCDRG00005019988) #15	ATP6AP2 (ENSCDRG00005020065) #17	ENSCDRG00005020200 #18	CXorf38 (ENSCDRG00005020221) #19	MED14 (ENSCDRG00005020243) #20	USP9X (ENSCDRG00005020300) #21	DDX3X (ENSCDRG00005020330) #22	NYX (ENSCDRG00005020391) #23	CASK (ENSCDRG00005020425) #26	GPR34 (ENSCDRG00005020516) #24	GPR82 (ENSCDRG00005020521) #25	ENSCDRG00005020530 #28	MAOA (ENSCDRG00005020544) #30	MAOB (ENSCDRG00005020569) #31	NDP (ENSCDRG00005020582) #32	EFHC2 (ENSCDRG00005020588) #35	ENSCDRG00005020594 #34	FUNDC1 (ENSCDRG00005020600) #36	ENSCDRG00005020602	KDM6A (ENSCDRG00005020633)	DIPK2B (ENSCDRG00005020807)	ENSCDRG00005020818
Alpaca	MODERN SPECIES	6119																DDX3X (ENSVPAG00000007680) #22
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00390000015623	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Carnivora	ANCESTRAL SPECIES	11	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Caniformia	ANCESTRAL SPECIES	26	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Caniformia_b	ANCESTRAL SPECIES	24	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a.b #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
Ursidae	ANCESTRAL SPECIES	28	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153.b #12	ENSGT00500000044890.a.a.b #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Ursus	ANCESTRAL SPECIES	254															ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35
American black bear	MODERN SPECIES	1265															USP9X (ENSUAMG00000013454) #21	DDX3X (ENSUAMG00000013185) #22
Polar bear	MODERN SPECIES	322															USP9X (ENSUMAG00000017495) #21	DDX3X (ENSUMAG00000016796) #22	GPR34 (ENSUMAG00000016775) #24	GPR82 (ENSUMAG00000016772) #25	CASK (ENSUMAG00000014136) #26	ENSUMAG00000013870 #28	MAOA (ENSUMAG00000013857) #30	MAOB (ENSUMAG00000013852) #31	NDP (ENSUMAG00000013841) #32	EFHC2 (ENSUMAG00000013826) #35
Giant Panda	MODERN SPECIES	2288	DYNLT3 (ENSAMEG00000028852) #7	SYTL5 (ENSAMEG00000007236) #8	ENSAMEG00000007169 #9	OTC (ENSAMEG00000007121) #10	ENSAMEG00000019648 #11	TSPAN7 (ENSAMEG00000007078) #12	ENSAMEG00000007116	MID1IP1 (ENSAMEG00000007076) #13	BCOR (ENSAMEG00000007027) #15	ENSAMEG00000019614	ATP6AP2 (ENSAMEG00000007010) #17	MPC1L (ENSAMEG00000019591) #18	CXorf38 (ENSAMEG00000024408) #19	MED14 (ENSAMEG00000006962) #20	USP9X (ENSAMEG00000006858) #21	DDX3X (ENSAMEG00000006801) #22	NYX (ENSAMEG00000006799) #23	CASK (ENSAMEG00000006693) #26	GPR34 (ENSAMEG00000019565) #24	GPR82 (ENSAMEG00000019558) #25	ENSAMEG00000027699 #28	ENSAMEG00000019618	ENSAMEG00000029934	ENSAMEG00000016407 #30	MAOB (ENSAMEG00000016331) #31	NDP (ENSAMEG00000028772) #32	EFHC2 (ENSAMEG00000017536) #35	FUNDC1 (ENSAMEG00000010258) #36	DUSP21 (ENSAMEG00000019469)	KDM6A (ENSAMEG00000005741)	DIPK2B (ENSAMEG00000028552)
Mustelinae	ANCESTRAL SPECIES	62	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a.b #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
American mink	MODERN SPECIES	51	ENSNVIG00000014344	SYTL5 (ENSNVIG00000014351) #8	SRPX (ENSNVIG00000014383)	ENSNVIG00000014513 #9	OTC (ENSNVIG00000014541) #10	ENSNVIG00000014575 #11	TSPAN7 (ENSNVIG00000014585) #12	MID1IP1 (ENSNVIG00000014608) #13	BCOR (ENSNVIG00000014624) #15	ENSNVIG00000014714	ATP6AP2 (ENSNVIG00000014721) #17	ENSNVIG00000014838 #18	CXorf38 (ENSNVIG00000014887) #19	MED14 (ENSNVIG00000014911) #20	USP9X (ENSNVIG00000014969) #21	DDX3X (ENSNVIG00000015149) #22	NYX (ENSNVIG00000015374) #23	CASK (ENSNVIG00000015419) #26	GPR34 (ENSNVIG00000016312) #24	GPR82 (ENSNVIG00000016317) #25	PPP1R2C (ENSNVIG00000016330) #28	MAOA (ENSNVIG00000016336) #30	MAOB (ENSNVIG00000016341) #31	NDP (ENSNVIG00000016370) #32	EFHC2 (ENSNVIG00000016403) #35	FUNDC1 (ENSNVIG00000016479) #36	ENSNVIG00000016493	KDM6A (ENSNVIG00000016503)	DIPK2B (ENSNVIG00000016828)	ENSNVIG00000016842	ENSNVIG00000016876
Ferret	MODERN SPECIES	209	SRPX (ENSMPUG00000012580)	ENSMPUG00000012593 #9	OTC (ENSMPUG00000012597) #10	ENSMPUG00000018907 #11	ENSMPUG00000012599	TSPAN7 (ENSMPUG00000012601) #12	MID1IP1 (ENSMPUG00000018915) #13	ENSMPUG00000012603	ENSMPUG00000012606	BCOR (ENSMPUG00000012607) #15	ENSMPUG00000018921	ATP6AP2 (ENSMPUG00000012611) #17	MPC1L (ENSMPUG00000018930) #18	MED14 (ENSMPUG00000012615) #20	USP9X (ENSMPUG00000012622) #21	DDX3X (ENSMPUG00000012631) #22	NYX (ENSMPUG00000012634) #23	CASK (ENSMPUG00000012639) #26	GPR34 (ENSMPUG00000018938) #24	GPR82 (ENSMPUG00000018942) #25	PPP1R2C (ENSMPUG00000018947) #28	ENSMPUG00000012643	MAOA (ENSMPUG00000012650) #30	MAOB (ENSMPUG00000012731) #31	NDP (ENSMPUG00000012912) #32	ENSMPUG00000018954	EFHC2 (ENSMPUG00000012914) #35	ENSMPUG00000012922	FUNDC1 (ENSMPUG00000012924) #36	ENSMPUG00000018962	KDM6A (ENSMPUG00000012926)
Canidae	ANCESTRAL SPECIES	26	ENSGT00940000162492.ib	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.ab #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Canis_lupus	ANCESTRAL SPECIES	26	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b.ab #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000154530.g.a	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00950000182869.e.b.b.p	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Dingo	MODERN SPECIES	247							BCOR (ENSCAFG00020027271) #15	ENSCAFG00020027265	ATP6AP2 (ENSCAFG00020027263) #17	ENSCAFG00020027261	MPC1L (ENSCAFG00020027259) #18	CXorf38 (ENSCAFG00020027255) #19	MED14 (ENSCAFG00020027233) #20	USP9X (ENSCAFG00020027230) #21	ENSCAFG00020027228	DDX3X (ENSCAFG00020027227) #22	ENSCAFG00020027225	NYX (ENSCAFG00020027223) #23	GPR34 (ENSCAFG00020027221) #24	GPR82 (ENSCAFG00020027220) #25	CASK (ENSCAFG00020027207) #26	ENSCAFG00020027202 #28	ENSCAFG00020027201	MAOA (ENSCAFG00020027183) #30	MAOB (ENSCAFG00020027173) #31	NDP (ENSCAFG00020027171) #32	EFHC2 (ENSCAFG00020027166) #35	FUNDC1 (ENSCAFG00020027164) #36	DUSP21 (ENSCAFG00020027162)	KDM6A (ENSCAFG00020022049)	DIPK2B (ENSCAFG00020021495)
Dog	MODERN SPECIES	144	DYNLT3 (ENSCAFG00845023973) #7	SYTL5 (ENSCAFG00845024105) #8	ENSCAFG00845024670	RPGR (ENSCAFG00845024867) #9	OTC (ENSCAFG00845025700) #10	ENSCAFG00845025837 #11	TSPAN7 (ENSCAFG00845025872) #12	MID1IP1 (ENSCAFG00845025983) #13	BCOR (ENSCAFG00845026046) #15	ENSCAFG00845026522	ATP6AP2 (ENSCAFG00845026626) #17	ENSCAFG00845026922	ENSCAFG00845026994	CXHXorf38 (ENSCAFG00845027009) #19	MED14 (ENSCAFG00845027192) #20	DDX3X (ENSCAFG00845024733) #22	ENSCAFG00845025399	NYX (ENSCAFG00845025424) #23	CASK (ENSCAFG00845025610) #26	GPR82 (ENSCAFG00845026872) #25	PPP1R2C (ENSCAFG00845026949) #28	ENSCAFG00845027065	MAOA (ENSCAFG00845027245) #30	MAOB (ENSCAFG00845027440) #31	ENSCAFG00845027745 #33	EFHC2 (ENSCAFG00845027895) #35	ENSCAFG00845028141 #34	FUNDC1 (ENSCAFG00845028259) #36	DUSP21 (ENSCAFG00845028289)	KDM6A (ENSCAFG00845028572)	DIPK2B (ENSCAFG00845029227)
Red fox	MODERN SPECIES	90	SRPX (ENSVVUG00000011256)	ENSVVUG00000011276 #9	OTC (ENSVVUG00000011334) #10	ENSVVUG00000011344 #11	TSPAN7 (ENSVVUG00000011357) #12	MID1IP1 (ENSVVUG00000011361) #13	BCOR (ENSVVUG00000011387) #15	ENSVVUG00000011413	ATP6AP2 (ENSVVUG00000011420) #17	MPC1L (ENSVVUG00000011425) #18	ENSVVUG00000011426	CUNHXorf38 (ENSVVUG00000011436) #19	MED14 (ENSVVUG00000011442) #20	ENSVVUG00000011458	USP9X (ENSVVUG00000011477) #21	DDX3X (ENSVVUG00000011589) #22	NYX (ENSVVUG00000011642) #23	CASK (ENSVVUG00000011654) #26	GPR82 (ENSVVUG00000011730) #25	ENSVVUG00000011751 #28	ENSVVUG00000011758	ENSVVUG00000011769 #30	MAOB (ENSVVUG00000011781) #31	NDP (ENSVVUG00000011804) #32	EFHC2 (ENSVVUG00000011810) #35	ENSVVUG00000011845 #34	FUNDC1 (ENSVVUG00000011848) #36	ENSVVUG00000011864	KDM6A (ENSVVUG00000011895)	CUNHXorf36 (ENSVVUG00000012038)	ENSVVUG00000012047
Felidae	ANCESTRAL SPECIES	12	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
Panthera	ANCESTRAL SPECIES	39	ENSGT00390000005568.gb.a.b	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
Tiger	MODERN SPECIES	200										ENSPTIG00000008287	ATP6AP2 (ENSPTIG00000014384) #17	MPC1L (ENSPTIG00000008295) #18	CXorf38 (ENSPTIG00000014450) #19	MED14 (ENSPTIG00000014500) #20	USP9X (ENSPTIG00000014670) #21	DDX3X (ENSPTIG00000014814) #22	CASK (ENSPTIG00000015082) #26	GPR82 (ENSPTIG00000008299) #25	MAOA (ENSPTIG00000015512) #30
Panthera_a	ANCESTRAL SPECIES	39	ENSGT00390000015623	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008732.a.a.c.b.b	ENSGT00390000010165.i.b.b.a	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233	ENSGT00940000162231
lion	MODERN SPECIES	88	ENSPLOG00000021250	ENSPLOG00000021262	SYTL5 (ENSPLOG00000021282) #8	ENSPLOG00000021386 #9	OTC (ENSPLOG00000021548) #10	TSPAN7 (ENSPLOG00000021583) #12	MID1IP1 (ENSPLOG00000021611) #13	BCOR (ENSPLOG00000021643) #15	ENSPLOG00000021673	ENSPLOG00000021686	ATP6AP2 (ENSPLOG00000021715) #17	MPC1L (ENSPLOG00000021900) #18	CXorf38 (ENSPLOG00000021911) #19	MED14 (ENSPLOG00000021938) #20	USP9X (ENSPLOG00000022020) #21	DDX3X (ENSPLOG00000022152) #22	NYX (ENSPLOG00000022299) #23	CASK (ENSPLOG00000022343) #26	GPR34 (ENSPLOG00000022409) #24	GPR82 (ENSPLOG00000022412) #25	ENSPLOG00000022424 #28	MAOA (ENSPLOG00000022433) #30	MAOB (ENSPLOG00000022444) #31	NDP (ENSPLOG00000022470) #32	EFHC2 (ENSPLOG00000022476) #35	FUNDC1 (ENSPLOG00000022491) #36	ENSPLOG00000022498	KDM6A (ENSPLOG00000022551)	DIPK2B (ENSPLOG00000022615)	ENSPLOG00000022624	ENSPLOG00000022630
leopard	MODERN SPECIES	69	SYTL5 (ENSPPRG00000002666) #8	SRPX (ENSPPRG00000002131)	ENSPPRG00000000830 #9	OTC (ENSPPRG00000021854) #10	TSPAN7 (ENSPPRG00000018929) #12	MID1IP1 (ENSPPRG00000016216) #13	ENSPPRG00000016522 #15	ENSPPRG00000014228 #15	ENSPPRG00000013998	ENSPPRG00000016148	ATP6AP2 (ENSPPRG00000013645) #17	MPC1L (ENSPPRG00000016022) #18	CXorf38 (ENSPPRG00000009176) #19	MED14 (ENSPPRG00000008958) #20	USP9X (ENSPPRG00000007696) #21	DDX3X (ENSPPRG00000005269) #22	NYX (ENSPPRG00000003109) #23	CASK (ENSPPRG00000002674) #26	GPR82 (ENSPPRG00000015625) #25	MAOA (ENSPPRG00000017638) #30	MAOB (ENSPPRG00000013398) #31	NDP (ENSPPRG00000013089) #32	EFHC2 (ENSPPRG00000012443) #35	FUNDC1 (ENSPPRG00000011924) #36	ENSPPRG00000015427	KDM6A (ENSPPRG00000009585)	DIPK2B (ENSPPRG00000004764)	ENSPPRG00000003422	ENSPPRG00000002401	CHST7 (ENSPPRG00000014832)	ENSPPRG00000002062
Cat	MODERN SPECIES	252	ENSFCAG00000045122	H2AP (ENSFCAG00000048955)	SYTL5 (ENSFCAG00000010874) #8	ENSFCAG00000030242 #9	OTC (ENSFCAG00000010876) #10	ENSFCAG00000023548 #11	TSPAN7 (ENSFCAG00000010839) #12	MID1IP1 (ENSFCAG00000004484) #13	BCOR (ENSFCAG00000004858) #15	ENSFCAG00000030887	ATP6AP2 (ENSFCAG00000022772) #17	MPC1L (ENSFCAG00000031610) #18	CXHXorf38 (ENSFCAG00000026853) #19	MED14 (ENSFCAG00000009450) #20	USP9X (ENSFCAG00000011962) #21	DDX3X (ENSFCAG00000025339) #22	NYX (ENSFCAG00000046637) #23	CASK (ENSFCAG00000011147) #26	GPR34 (ENSFCAG00000024129) #24	GPR82 (ENSFCAG00000011153) #25	ENSFCAG00000051925 #28	ENSFCAG00000047489	MAOA (ENSFCAG00000013085) #30	MAOB (ENSFCAG00000013086) #31	NDP (ENSFCAG00000032394) #32	ENSFCAG00000050785	EFHC2 (ENSFCAG00000007765) #35	FUNDC1 (ENSFCAG00000005541) #36	ENSFCAG00000029357	KDM6A (ENSFCAG00000009445)	DIPK2B (ENSFCAG00000042247)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00940000155009 #7	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000154679.bc	ENSGT00940000162233
Equus	ANCESTRAL SPECIES	27	ENSGT00940000162492	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000153096.b.c.a.a.b.a #11	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT01090000261478	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000154679.bc	ENSGT00940000162233
Horse	MODERN SPECIES	480	SYTL5 (ENSECAG00000011264) #8	ENSECAG00000055649	SRPX (ENSECAG00000018935)	ENSECAG00000017318 #9	OTC (ENSECAG00000022838) #10	ENSECAG00000046542 #11	TSPAN7 (ENSECAG00000016573) #12	MID1IP1 (ENSECAG00000002992) #13	BCOR (ENSECAG00000005995) #15	ATP6AP2 (ENSECAG00000019889) #17	MPC1L (ENSECAG00000003094) #18	CXorf38 (ENSECAG00000058683) #19	MED14 (ENSECAG00000014191) #20	ENSECAG00000030185	USP9X (ENSECAG00000005549) #21	DDX3X (ENSECAG00000009901) #22	NYX (ENSECAG00000031529) #23	CASK (ENSECAG00000013894) #26	GPR34 (ENSECAG00000003173) #24	GPR82 (ENSECAG00000003381) #25	MAOA (ENSECAG00000022277) #30	MAOB (ENSECAG00000000132) #31	NDP (ENSECAG00000016176) #32	EFHC2 (ENSECAG00000016627) #35	ENSECAG00000049383	FUNDC1 (ENSECAG00000051402) #36	KDM6A (ENSECAG00000007640)	DIPK2B (ENSECAG00000016492)	ENSECAG00000052721	ENSECAG00000041323	ZNF674 (ENSECAG00000018635)
Donkey	MODERN SPECIES	36	ENSEASG00005024089	SYTL5 (ENSEASG00005017962) #8	SRPX (ENSEASG00005028148)	ENSEASG00005011654 #9	OTC (ENSEASG00005011647) #10	ENSEASG00005025852 #11	ENSEASG00005027817 #12	MID1IP1 (ENSEASG00005031295) #13	BCOR (ENSEASG00005011454) #15	ATP6AP2 (ENSEASG00005011447) #17	MPC1L (ENSEASG00005011445) #18	CXorf38 (ENSEASG00005011443) #19	MED14 (ENSEASG00005011439) #20	ENSEASG00005008337	USP9X (ENSEASG00005026963) #21	DDX3X (ENSEASG00005009841) #22	NYX (ENSEASG00005027095) #23	CASK (ENSEASG00005009875) #26	GPR34 (ENSEASG00005027088) #24	GPR82 (ENSEASG00005034863) #25	PPP1R2C (ENSEASG00005034956) #28	ENSEASG00005020177 #30	MAOB (ENSEASG00005020127) #31	EFHC2 (ENSEASG00005036483) #35	ENSEASG00005014339 #34	ENSEASG00005014341	ENSEASG00005000002 #36	ENSEASG00005022746	KDM6A (ENSEASG00005012062)	ENSEASG00005029986	ENSEASG00005035582
Chiroptera	ANCESTRAL SPECIES	25	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000161186.B	ENSGT00940000155202.i.b	ENSGT00520000055625.a
Microchiroptera	ANCESTRAL SPECIES	25	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417.j #10	ENSGT00940000156153 #12	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000155616.c.b #34	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000153460.c.a
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010003964 #9	OTC (ENSRFEG00010003907) #10	TSPAN7 (ENSRFEG00010003881) #12	ENSRFEG00010003871	MID1IP1 (ENSRFEG00010003860) #13	ENSRFEG00010003854	BCOR (ENSRFEG00010003802) #15	ATP6AP2 (ENSRFEG00010003719) #17	MPC1L (ENSRFEG00010003673) #18	CXorf38 (ENSRFEG00010003652) #19	ENSRFEG00010003637	MED14 (ENSRFEG00010003564) #20	ENSRFEG00010003529	USP9X (ENSRFEG00010003479) #21	ENSRFEG00010003454	DDX3X (ENSRFEG00010003399) #22	NYX (ENSRFEG00010003367) #23	GPR34 (ENSRFEG00010003355) #24	GPR82 (ENSRFEG00010003342) #25	CASK (ENSRFEG00010003118) #26	ENSRFEG00010002935	ENSRFEG00010002926 #28	ENSRFEG00010002848 #30	MAOB (ENSRFEG00010002766) #31	NDP (ENSRFEG00010002727) #32	ENSRFEG00010002714	ENSRFEG00010002676 #35	ENSRFEG00010002658	FUNDC1 (ENSRFEG00010002634) #36	ENSRFEG00010002612	ENSRFEG00010002601
Microbat	MODERN SPECIES	1013						SRPX (ENSMLUG00000008997)	ENSMLUG00000025649 #9	OTC (ENSMLUG00000009014) #10	TSPAN7 (ENSMLUG00000009730) #12	BCOR (ENSMLUG00000014376) #15	ATP6AP2 (ENSMLUG00000001159) #17	MPC1L (ENSMLUG00000030672) #18	CXorf38 (ENSMLUG00000001164) #19	MED14 (ENSMLUG00000001167) #20	USP9X (ENSMLUG00000010139) #21	DDX3X (ENSMLUG00000010216) #22	ENSMLUG00000029310	CASK (ENSMLUG00000002989) #26	GPR34 (ENSMLUG00000003012) #24	GPR82 (ENSMLUG00000003016) #25	ENSMLUG00000023913	ENSMLUG00000022321	MAOA (ENSMLUG00000001427) #30	MAOB (ENSMLUG00000001434) #31	ENSMLUG00000015847	NDP (ENSMLUG00000015853) #32	ENSMLUG00000030574	ENSMLUG00000016295 #35	ENSMLUG00000016089 #34	FUNDC1 (ENSMLUG00000015860) #36	DUSP21 (ENSMLUG00000029742)
Megabat	MODERN SPECIES	7487																DDX3X (ENSPVAG00000014651) #22
Atlantogenata	ANCESTRAL SPECIES	59				ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000161186.B	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162233
Afrotheria	ANCESTRAL SPECIES	72					ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a
Afrotheria_a	ANCESTRAL SPECIES	69					ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375.c #21	ENSGT00940000154443.b.a #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000164483 #28	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000163638	ENSGT00940000155202.i.b	ENSGT00520000055625.a	ENSGT00940000162231	ENSGT00940000153460.c.a
Elephant	MODERN SPECIES	453		SRPX (ENSLAFG00000002956)	ENSLAFG00000023163 #9	OTC (ENSLAFG00000009919) #10	TSPAN7 (ENSLAFG00000006016) #12	MID1IP1 (ENSLAFG00000030491) #13	BCOR (ENSLAFG00000014446) #15	ENSLAFG00000030399	ATP6AP2 (ENSLAFG00000017858) #17	MPC1L (ENSLAFG00000027876) #18	CXorf38 (ENSLAFG00000012064) #19	MED14 (ENSLAFG00000012068) #20	ENSLAFG00000027634	USP9X (ENSLAFG00000008552) #21	ENSLAFG00000017387	DDX3X (ENSLAFG00000017378) #22	NYX (ENSLAFG00000015300) #23	GPR34 (ENSLAFG00000006949) #24	GPR82 (ENSLAFG00000006951) #25	CASK (ENSLAFG00000006945) #26	PPP1R2C (ENSLAFG00000004738) #28	MAOA (ENSLAFG00000000503) #30	MAOB (ENSLAFG00000015027) #31	NDP (ENSLAFG00000007780) #32	EFHC2 (ENSLAFG00000013146) #35	FUNDC1 (ENSLAFG00000015232) #36	DUSP21 (ENSLAFG00000021812)	KDM6A (ENSLAFG00000014811)	DIPK2B (ENSLAFG00000006035)	SLC9A7 (ENSLAFG00000003443)	RP2 (ENSLAFG00000002392)
Hyrax	MODERN SPECIES	11116																DDX3X (ENSPCAG00000007534) #22
Tenrec	MODERN SPECIES	2307																DDX3X (ENSETEG00000006882) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000154443.b.a #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1772																ENSDNOG00000007452 #22	ENSDNOG00000047959	NYX (ENSDNOG00000049459) #23	GPR34 (ENSDNOG00000014509) #24	GPR82 (ENSDNOG00000036111) #25	CASK (ENSDNOG00000014474) #26
Armadillo	MODERN SPECIES	4345																ENSDNOG00000005693 #22	ABCB7 (ENSDNOG00000025210)	NEXMIF (ENSDNOG00000007442)
Sloth	MODERN SPECIES	7769																DDX3X (ENSCHOG00000011076) #22
Eutheria	ANCESTRAL SPECIES	117															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Boreoeutheria	ANCESTRAL SPECIES	43															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Laurasiatheria	ANCESTRAL SPECIES	50															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Laurasiatheria_a	ANCESTRAL SPECIES	40															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Artiodactyla	ANCESTRAL SPECIES	58															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Artiodactyla_a	ANCESTRAL SPECIES	56															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Artiodactyla_b	ANCESTRAL SPECIES	60															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Cetacea	ANCESTRAL SPECIES	35															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00390000005717
Odontoceti	ANCESTRAL SPECIES	39															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Odontoceti_a	ANCESTRAL SPECIES	44															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Odontoceti_b	ANCESTRAL SPECIES	36															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Monodontidae	ANCESTRAL SPECIES	45															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Narwhal	MODERN SPECIES	309	ARSD (ENSMMNG00015018253)	GYG2 (ENSMMNG00015018281)	ENSMMNG00015018322	ENSMMNG00015018337	AKAP17A (ENSMMNG00015018359)	P2RY8 (ENSMMNG00015018374)	ENSMMNG00015018394	SLC25A6 (ENSMMNG00015018431)	ENSMMNG00015018464	CSF2RA (ENSMMNG00015018506)	ENSMMNG00015018525	SHOX (ENSMMNG00015018582)	ENSMMNG00015018618	GTPBP6 (ENSMMNG00015018660)	USP9Y (ENSMMNG00015018707) ##21	DDX3Y (ENSMMNG00015018744) ##22	UTY (ENSMMNG00015018938)	ENSMMNG00015019132	ENSMMNG00015019154	ENSMMNG00015019288	ENSMMNG00015019305	OFD1 (ENSMMNG00015019344)	ENSMMNG00015019477	GEMIN8 (ENSMMNG00015019591)	ENSMMNG00015019597	GLRA2 (ENSMMNG00015019622)	FANCB (ENSMMNG00015019684)	MOSPD2 (ENSMMNG00015019716)	ASB9 (ENSMMNG00015019741)	ASB11 (ENSMMNG00015019802)	PIGA (ENSMMNG00015019883)
Blue whale	MODERN SPECIES	41	ENSBMSG00010021896 #15	ENSBMSG00010021884	ENSBMSG00010021851	ENSBMSG00010021821	ENSBMSG00010021816	ENSBMSG00010021814	ENSBMSG00010021813	ENSBMSG00010021808	ENSBMSG00010021806	ENSBMSG00010021804	ENSBMSG00010021801	ENSBMSG00010021794	ZFY (ENSBMSG00010021784)	USP9Y (ENSBMSG00010021776) ##21	ENSBMSG00010021769	ENSBMSG00010021766 ##22	ENSBMSG00010021761	UTY (ENSBMSG00010021718)	ENSBMSG00010021706
Pecora	ANCESTRAL SPECIES	63																ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00950000183152.A.`b.b	ENSGT00940000155375.d ##21
Percora_a	ANCESTRAL SPECIES	62																ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00950000183152.A.`b.b	ENSGT00940000155375.d ##21
Bovidae	ANCESTRAL SPECIES	50																ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00950000183152.A.`b.b	ENSGT00940000155375.d ##21	ENSGT00390000001798.j	ENSGT00390000009151.j
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Domestic yak	MODERN SPECIES	70	ENSBGRG00000018981	ENSBGRG00000018584	PRKX (ENSBGRG00000018435)	ENSBGRG00000018380	ENSBGRG00000018343	ENSBGRG00000018304	ENSBGRG00000018225	ENSBGRG00000018138	ENSBGRG00000017967	ENSBGRG00000017805	ENSBGRG00000017714	STS (ENSBGRG00000017387)	PNPLA4 (ENSBGRG00000017194)	ANOS1 (ENSBGRG00000016848)	ENSBGRG00000016770	ENSBGRG00000016329 ##22	ENSBGRG00000016296	ENSBGRG00000016206	ENSBGRG00000016180	ENSBGRG00000016112	USP9Y (ENSBGRG00000015615) ##21	ENSBGRG00000015085	ENSBGRG00000014925	ENSBGRG00000014878	GPR143 (ENSBGRG00000014824)	ENSBGRG00000014666
American bison	MODERN SPECIES	3360																ENSBBBG00000017763 ##22	AGTR2 (ENSBBBG00000017747)	PNPLA4 (ENSBBBG00000017745)	ANOS1 (ENSBBBG00000017715)	ENSBBBG00000017691	GPR143 (ENSBBBG00000004346)	ENSBBBG00000008006	ENSBBBG00000004335	ENSBBBG00000007432	ENSBBBG00000017461
Caprinae	ANCESTRAL SPECIES	92																ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00950000183152.A.`b.b
Goat	MODERN SPECIES	53																ENSCHIG00000010585 ##22	ENSCHIG00000020680	ENSCHIG00000024109
Yarkand deer	MODERN SPECIES	1323	TLR8 (ENSCHYG00000023987)	TLR7 (ENSCHYG00000024000)	PRPS2 (ENSCHYG00000024019)	FRMPD4 (ENSCHYG00000024154)	ENSCHYG00000024964	ENSCHYG00000025334	AMELY (ENSCHYG00000025353)	ARHGAP6 (ENSCHYG00000025448)	ENSCHYG00000025477	MID1 (ENSCHYG00000025497)	CLCN4 (ENSCHYG00000025569)	WWC3 (ENSCHYG00000025613)	ENSCHYG00000025723	ENSCHYG00000025751	ENSCHYG00000025769	ENSCHYG00000025773 ##22	ENSCHYG00000025789	UTY (ENSCHYG00000025844)	ENSCHYG00000026010	USP9Y (ENSCHYG00000026024) ##21	ENSCHYG00000026051	ENSCHYG00000026062	ENSCHYG00000026081	ANOS1 (ENSCHYG00000026105)	PNPLA4 (ENSCHYG00000026179)	STS (ENSCHYG00000026228)	PUDP (ENSCHYG00000026267)	ENSCHYG00000026317	ENSCHYG00000026346	ENSCHYG00000026359	ENSCHYG00000008821
Suina	ANCESTRAL SPECIES	111																ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Pig	MODERN SPECIES	301	ENSSSCG00000056285	ENSSSCG00000061231	ENSSSCG00000042717	ENSSSCG00000061903	ENSSSCG00000055402	ENSSSCG00000063414	ENSSSCG00000032661	ENSSSCG00000039365	AMELY (ENSSSCG00000031650)	ZFY (ENSSSCG00000012179)	ENSSSCG00000012178	ENSSSCG00000052941	ENSSSCG00000037509	ENSSSCG00000021305 ##21	ENSSSCG00000027046 ##21	ENSSSCG00000026430 ##22	ENSSSCG00000025253	ENSSSCG00000040592	ENSSSCG00000056936	ENSSSCG00000047835	ENSSSCG00000056055	ENSSSCG00000033858	ENSSSCG00000031398	ENSSSCG00000043796	ENSSSCG00000055885	ENSSSCG00000012833	ENSSSCG00000039144	ENSSSCG00000032135	ENSSSCG00000034469	ENSSSCG00000036341	ENSSSCG00000038226
Laurasiatheria_b	ANCESTRAL SPECIES	43															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Laurasiatheria_c	ANCESTRAL SPECIES	47															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Equus	ANCESTRAL SPECIES	109															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Donkey	MODERN SPECIES	37	ENSEASG00005020760	ARHGAP6 (ENSEASG00005020804)	ENSEASG00005020876	MSL3 (ENSEASG00005020884)	FRMPD4 (ENSEASG00005020904)	PRPS2 (ENSEASG00005020912)	TLR7 (ENSEASG00005035985)	TLR8 (ENSEASG00005025097)	ENSEASG00005028709	EGFL6 (ENSEASG00005016498)	TCEANC (ENSEASG00005016497)	RAB9A (ENSEASG00005034868)	ENSEASG00005034760	ENSEASG00005028547	ENSEASG00005031831 ##21	ENSEASG00005012087 ##22	ENSEASG00005012884	ENSEASG00005022694	ENSEASG00005022690	ENSEASG00005022686	ENSEASG00005017881	ENSEASG00005030729	ENSEASG00005010760	ENSEASG00005038269	ENSEASG00005037796	ENSEASG00005025009	ENSEASG00005022529	ENSEASG00005017764	ENSEASG00005026200	ENSEASG00005035173	ENSEASG00005037328
Carnivora	ANCESTRAL SPECIES	46															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Caniformia	ANCESTRAL SPECIES	52															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Canidae	ANCESTRAL SPECIES	82															ENSGT01040000242105	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00520000056155
Canis_lupus	ANCESTRAL SPECIES	63															ENSGT01040000242105	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00520000056155
Dog	MODERN SPECIES	111		ENSCAFG00845018537	ENSCAFG00845018760	ENSCAFG00845019244 #15	ENSCAFG00845019481	ENSCAFG00845019559	ENSCAFG00845019704	ENSCAFG00845020312	ENSCAFG00845020336	ENSCAFG00845020384	ENSCAFG00845020564	ENSCAFG00845020666	ENSCAFG00845020782	ENSCAFG00845021099	ENSCAFG00845022119	ENSCAFG00845022201 ##22	UTY (ENSCAFG00845022496)	ENSCAFG00845022629
Red fox	MODERN SPECIES	290									ENSVVUG00000030365	ENSVVUG00000030364	ENSVVUG00000030363	KDM5D (ENSVVUG00000030362)	ENSVVUG00000030361	ENSVVUG00000030360 ##21	ENSVVUG00000030359	DDX3Y (ENSVVUG00000030358) ##22	ENSVVUG00000030357	ENSVVUG00000030356	ENSVVUG00000030355
Caniformia_b	ANCESTRAL SPECIES	65															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Ursidae	ANCESTRAL SPECIES	88															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Ursus	ANCESTRAL SPECIES	353															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a.c
American black bear	MODERN SPECIES	919																ENSUAMG00000012970 ##22	ENSUAMG00000012716
Polar bear	MODERN SPECIES	346															ENSUMAG00000005459 ##21	DDX3Y (ENSUMAG00000010366) ##22	ENSUMAG00000011973
Felidae	ANCESTRAL SPECIES	39															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Panthera	ANCESTRAL SPECIES	79															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Tiger	MODERN SPECIES	226														ENSPTIG00000016624	ENSPTIG00000016652 ##21	DDX3Y (ENSPTIG00000016749) ##22	ENSPTIG00000017581
Euarchontoglires	ANCESTRAL SPECIES	37															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Primates	ANCESTRAL SPECIES	41															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Strepsirrhini	ANCESTRAL SPECIES	87															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Lemuriformes	ANCESTRAL SPECIES	132															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Lemuriformes_a	ANCESTRAL SPECIES	322															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Greater bamboo lemur	MODERN SPECIES	116													ENSPSMG00000022033	ENSPSMG00000022035	ENSPSMG00000022653 ##21	DDX3Y (ENSPSMG00000023578) ##22	ENSPSMG00000024202
Mouse lemur	MODERN SPECIES	7	RFNG (ENSMICG00000031333)	GPS1 (ENSMICG00000010127)	DUS1L (ENSMICG00000010159)	ENSMICG00000043616	CCDC57 (ENSMICG00000016752)	SLC16A3 (ENSMICG00000045790)	CSNK1D (ENSMICG00000043075)	ENSMICG00000031373	OGFOD3 (ENSMICG00000004525)	HEXD (ENSMICG00000004531)	CYBC1 (ENSMICG00000038561)	NARF (ENSMICG00000004560)	FOXK2 (ENSMICG00000004568)	WDR45B (ENSMICG00000008013)	RAB40B (ENSMICG00000045452)	ENSMICG00000045639 ##22	FN3KRP (ENSMICG00000038225)	FN3K (ENSMICG00000038729)	ZNF750 (ENSMICG00000004772)	TBCD (ENSMICG00000004760)	B3GNTL1 (ENSMICG00000004774)	METRNL (ENSMICG00000047994)
Haplorrhini	ANCESTRAL SPECIES	85															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Simiiformes	ANCESTRAL SPECIES	64															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Catarrhini	ANCESTRAL SPECIES	50															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Cercopithecidae	ANCESTRAL SPECIES	68															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Cercopithecinae	ANCESTRAL SPECIES	54															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Cercopithecinae_a	ANCESTRAL SPECIES	36										ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j	ENSGT00940000159832.i.g.b	ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Macaca	ANCESTRAL SPECIES	41												ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j	ENSGT00940000159832.i.g.b	ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Macaca_a	ANCESTRAL SPECIES	29												ENSGT01040000241139	ENSGT00940000153421.a.a.a.a.b.j	ENSGT00940000159832.i.g.b	ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00940000157452.k	ENSGT00940000157452.l.a	ENSGT00940000157452.l.b
Rhesus	MODERN SPECIES	328						ENSMMUG00000055976	SRY (ENSMMUG00000041853)	RPS4Y1 (ENSMMUG00000038331)	ZFY (ENSMMUG00000046378)	AMELY (ENSMMUG00000038866)	TBL1Y (ENSMMUG00000046495)	ENSMMUG00000056331	ENSMMUG00000041468	ENSMMUG00000046892	USP9Y (ENSMMUG00000045991) ##21	DDX3Y (ENSMMUG00000043966) ##22	UTY (ENSMMUG00000038182)	ENSMMUG00000055280	ENSMMUG00000042225	ENSMMUG00000042267	ENSMMUG00000061325	NLGN4Y (ENSMMUG00000040210)	CYorf15A (ENSMMUG00000049104)	KDM5D (ENSMMUG00000045017)	ENSMMUG00000057579	EIF1AY (ENSMMUG00000043715)	ENSMMUG00000059478	RPS4Y2 (ENSMMUG00000038824)	ENSMMUG00000039261	ENSMMUG00000061536	ENSMMUG00000056138
Crab-eating macaque	MODERN SPECIES	174							RPS4Y1 (ENSMFAG00000055171)	ZFY (ENSMFAG00000052850)	ENSMFAG00000029941	ENSMFAG00000057015	TBL1Y (ENSMFAG00000050736)	ENSMFAG00000052639	ENSMFAG00000058259	ENSMFAG00000056494	USP9Y (ENSMFAG00000065535) ##21	DDX3Y (ENSMFAG00000060380) ##22	UTY (ENSMFAG00000063023)	ENSMFAG00000063890	ENSMFAG00000053995	ENSMFAG00000049348	ENSMFAG00000051040	ENSMFAG00000047494	ENSMFAG00000061191	ENSMFAG00000050377	ENSMFAG00000052978	NLGN4Y (ENSMFAG00000038021)	ENSMFAG00000056241	ENSMFAG00000055347	KDM5D (ENSMFAG00000063076)	EIF1AY (ENSMFAG00000052371)	RPS4Y2 (ENSMFAG00000048442)
Cercopithecinae_b	ANCESTRAL SPECIES	99															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Olive baboon	MODERN SPECIES	793			ENSPANG00000001889	ENSPANG00000041995	AKAP17A (ENSPANG00000025821)	ENSPANG00000037790	ASMT (ENSPANG00000010256)	GYG2 (ENSPANG00000017943)	ENSPANG00000046348	ZBED1 (ENSPANG00000011132)	CD99 (ENSPANG00000017974)	RPS4Y1 (ENSPANG00000042865)	ENSPANG00000042948	ZFY (ENSPANG00000049860)	USP9Y (ENSPANG00000049578) ##21	DDX3Y (ENSPANG00000039890) ##22	ENSPANG00000037284	ENSPANG00000048452	ENSPANG00000048821	ENSPANG00000035128	ENSPANG00000021716	ENSPANG00000045064	ENSPANG00000043359	ENSPANG00000047183	ENSPANG00000050347	ENSPANG00000043502	NLGN4Y (ENSPANG00000037921)	ENSPANG00000037389	ENSPANG00000050770	ENSPANG00000046451	ENSPANG00000049928
Vervet Monkey	MODERN SPECIES	204												RPS4Y1 (ENSCSAG00000018322)	ZFY (ENSCSAG00000018321)	ENSCSAG00000018320	USP9Y (ENSCSAG00000018318) ##21	DDX3Y (ENSCSAG00000018317) ##22	UTY (ENSCSAG00000018316)	ENSCSAG00000018315	KDM5D (ENSCSAG00000018314)	EIF1AY (ENSCSAG00000018313)	RPS4Y2 (ENSCSAG00000018312)	ENSCSAG00000018311	ENSCSAG00000018310	XKR3 (ENSCSAG00000018309)	ENSCSAG00000018308	ENSCSAG00000018306	ENSCSAG00000018304
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Golden snub-nosed monkey	MODERN SPECIES	3127														ENSRROG00000035232 ##21	ENSRROG00000042642	DDX3Y (ENSRROG00000036763) ##22	ENSRROG00000043698	ENSRROG00000040826	UTY (ENSRROG00000044314)
Black snub-nosed monkey	MODERN SPECIES	1275																DDX3Y (ENSRBIG00000032422) ##22
Hominoidea	ANCESTRAL SPECIES	61															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Hominidae	ANCESTRAL SPECIES	55															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	61															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Homo/Pan group	ANCESTRAL SPECIES	62															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Human	MODERN SPECIES	1828	SRY (ENSG00000184895)	RPS4Y1 (ENSG00000129824)	ZFY (ENSG00000067646)	TGIF2LY (ENSG00000176679)	PCDH11Y (ENSG00000099715)	TSPY2 (ENSG00000168757)	AMELY (ENSG00000099721)	TBL1Y (ENSG00000092377)	TSPY4 (ENSG00000233803)	TSPY8 (ENSG00000229549)	TSPY3 (ENSG00000228927)	TSPY1 (ENSG00000258992)	TSPY9 (ENSG00000238074)	TSPY10 (ENSG00000236424)	USP9Y (ENSG00000114374) ##21	DDX3Y (ENSG00000067048) ##22	UTY (ENSG00000183878)	TMSB4Y (ENSG00000154620)	VCY (ENSG00000129864)	VCY1B (ENSG00000129862)	NLGN4Y (ENSG00000165246)	CDY2B (ENSG00000129873)	CDY2A (ENSG00000182415)	HSFY1 (ENSG00000172468)	HSFY2 (ENSG00000169953)	KDM5D (ENSG00000012817)	EIF1AY (ENSG00000198692)	RPS4Y2 (ENSG00000280969)	RBMY1B (ENSG00000242875)	RBMY1A1 (ENSG00000234414)	RBMY1D (ENSG00000244395)
Pan	ANCESTRAL SPECIES	79															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Chimpanzee	MODERN SPECIES	973	ENSPTRG00000046879	ENSPTRG00000050748	ENSPTRG00000050742	ENSPTRG00000049142	ENSPTRG00000047385	ENSPTRG00000051022	ENSPTRG00000046285	ENSPTRG00000017053	RPS4Y2 (ENSPTRG00000022505)	EIF1AY (ENSPTRG00000022504)	KDM5D (ENSPTRG00000022503)	ENSPTRG00000042501	ENSPTRG00000022501	ENSPTRG00000021627	USP9Y (ENSPTRG00000022487) ##21	DDX3Y (ENSPTRG00000022488) ##22	ENSPTRG00000006940	UTY (ENSPTRG00000022489)	TMSB4Y (ENSPTRG00000052699)	ENSPTRG00000044694	ENSPTRG00000049568	NLGN4Y (ENSPTRG00000022494)	ENSPTRG00000046004	ENSPTRG00000042614	PRKY (ENSPTRG00000038881)	TBL1Y (ENSPTRG00000022475)	ENSPTRG00000044034	ENSPTRG00000044388	AMELY (ENSPTRG00000022474)	ZFY (ENSPTRG00000022471)	RPS4Y1 (ENSPTRG00000022470)
Platyrrhini	ANCESTRAL SPECIES	99															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Cebidae	ANCESTRAL SPECIES	91															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Cebidae_a	ANCESTRAL SPECIES	184															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	799															USP9Y (ENSCCAG00000025243) ##21	ENSCCAG00000000872 ##22
Capuchin	MODERN SPECIES	1108																ENSCCAG00000036904 ##22
Marmoset	DUPLICATION
Marmoset	DUPLICATION
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	79	KDM5D (ENSCJAG00000082956)	ENSCJAG00000073108	ENSCJAG00000087052 ##22	ENSCJAG00000070436 ##22	ENSCJAG00000079631	ENSCJAG00000085173	ENSCJAG00000071990	ENSCJAG00000071996	ENSCJAG00000073238	AKAP17A (ENSCJAG00000041692)	ENSCJAG00000079422	DDX3Y (ENSCJAG00000076197) ##22	SRY (ENSCJAG00000077540)	RPS4Y1 (ENSCJAG00000081678)	ZFY (ENSCJAG00000078569)	ENSCJAG00000086894 ##22	ENSCJAG00000073601	UTY (ENSCJAG00000074089)	ENSCJAG00000072837	IL3RA (ENSCJAG00000085503)	ENSCJAG00000083190	ENSCJAG00000076375	ENSCJAG00000033585	ENSCJAG00000077317	ENSCJAG00000087000	ENSCJAG00000079573	ENSCJAG00000083719
Marmoset	MODERN SPECIES	79	ENSCJAG00000078245	ENSCJAG00000055325	ENSCJAG00000073149	ENSCJAG00000084982	EIF1AY (ENSCJAG00000005371)	ENSCJAG00000074064	ENSCJAG00000075041	ENSCJAG00000071986	RBMY (ENSCJAG00000083285)	ENSCJAG00000015803	ENSCJAG00000082578	ENSCJAG00000085107	KDM5D (ENSCJAG00000082956)	ENSCJAG00000073108	ENSCJAG00000087052 ##22	ENSCJAG00000070436 ##22	ENSCJAG00000079631	ENSCJAG00000085173	ENSCJAG00000071990	ENSCJAG00000071996	ENSCJAG00000073238	AKAP17A (ENSCJAG00000041692)	ENSCJAG00000079422	DDX3Y (ENSCJAG00000076197) ##22	SRY (ENSCJAG00000077540)	RPS4Y1 (ENSCJAG00000081678)	ZFY (ENSCJAG00000078569)	ENSCJAG00000086894 ##22	ENSCJAG00000073601	UTY (ENSCJAG00000074089)	ENSCJAG00000072837
Marmoset	MODERN SPECIES	79	UTY (ENSCJAG00000074089)	ENSCJAG00000073601	ENSCJAG00000086894 ##22	ZFY (ENSCJAG00000078569)	RPS4Y1 (ENSCJAG00000081678)	SRY (ENSCJAG00000077540)	DDX3Y (ENSCJAG00000076197) ##22	ENSCJAG00000079422	AKAP17A (ENSCJAG00000041692)	ENSCJAG00000073238	ENSCJAG00000071996	ENSCJAG00000071990	ENSCJAG00000085173	ENSCJAG00000079631	ENSCJAG00000070436 ##22	ENSCJAG00000087052 ##22	ENSCJAG00000073108	KDM5D (ENSCJAG00000082956)	ENSCJAG00000085107	ENSCJAG00000082578	ENSCJAG00000015803	RBMY (ENSCJAG00000083285)	ENSCJAG00000071986	ENSCJAG00000075041	ENSCJAG00000074064	EIF1AY (ENSCJAG00000005371)	ENSCJAG00000084982	ENSCJAG00000073149	ENSCJAG00000055325	ENSCJAG00000078245	ENSCJAG00000074080
Marmoset	MODERN SPECIES	79	RBMY (ENSCJAG00000083285)	ENSCJAG00000015803	ENSCJAG00000082578	ENSCJAG00000085107	KDM5D (ENSCJAG00000082956)	ENSCJAG00000073108	ENSCJAG00000087052 ##22	ENSCJAG00000070436 ##22	ENSCJAG00000079631	ENSCJAG00000085173	ENSCJAG00000071990	ENSCJAG00000071996	ENSCJAG00000073238	AKAP17A (ENSCJAG00000041692)	ENSCJAG00000079422	DDX3Y (ENSCJAG00000076197) ##22	SRY (ENSCJAG00000077540)	RPS4Y1 (ENSCJAG00000081678)	ZFY (ENSCJAG00000078569)	ENSCJAG00000086894 ##22	ENSCJAG00000073601	UTY (ENSCJAG00000074089)	ENSCJAG00000072837	IL3RA (ENSCJAG00000085503)	ENSCJAG00000083190	ENSCJAG00000076375	ENSCJAG00000033585	ENSCJAG00000077317	ENSCJAG00000087000	ENSCJAG00000079573	ENSCJAG00000083719
Mas night monkey	MODERN SPECIES	814	SCML2 (ENSANAG00000020966)	CDKL5 (ENSANAG00000034696)	RS1 (ENSANAG00000029033)	PPEF1 (ENSANAG00000023404)	PHKA2 (ENSANAG00000038435)	ADGRG2 (ENSANAG00000034597)	PDHA1 (ENSANAG00000030855)	MAP3K15 (ENSANAG00000034023)	ENSANAG00000030233	ENSANAG00000034832	ENSANAG00000026646	MAP7D2 (ENSANAG00000037417)	ENSANAG00000030856	ENSANAG00000025820	RPS6KA3 (ENSANAG00000026591)	ENSANAG00000000067 ##22	ENSANAG00000019923	CNKSR2 (ENSANAG00000030385)	KLHL34 (ENSANAG00000020210)	SMPX (ENSANAG00000035900)	ENSANAG00000034743	MBTPS2 (ENSANAG00000022738)	SMS (ENSANAG00000031156)	ENSANAG00000032026	ENSANAG00000030126	PHEX (ENSANAG00000021236)	CBLL2 (ENSANAG00000024818)	ENSANAG00000023417
Euarchontoglires_A	ANCESTRAL SPECIES	45															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Glires	ANCESTRAL SPECIES	45															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Rodentia	ANCESTRAL SPECIES	40															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Rodentia_B	ANCESTRAL SPECIES	75															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Myomorpha	ANCESTRAL SPECIES	95															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Muroidea	ANCESTRAL SPECIES	113															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Muroidea_A	ANCESTRAL SPECIES	59															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Murinae	ANCESTRAL SPECIES	64															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Mus	ANCESTRAL SPECIES	43															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Mus_A	ANCESTRAL SPECIES	36															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Mus_B	ANCESTRAL SPECIES	47															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a
Mouse	MODERN SPECIES	38	Gm3376 (ENSMUSG00000096520)	Gm21708 (ENSMUSG00000095948)	Gm21704 (ENSMUSG00000093987)	Gm21693 (ENSMUSG00000094511)	Gm21677 (ENSMUSG00000093918)	Gm29289 (ENSMUSG00000101667)	Gm10352 (ENSMUSG00000091987)	Gm10256 (ENSMUSG00000095852)	Rbmy (ENSMUSG00000094658)	Gm4064 (ENSMUSG00000102053)	H2al2b (ENSMUSG00000095573)	Sry (ENSMUSG00000069036)	H2al2c (ENSMUSG00000094881)	Zfy2 (ENSMUSG00000000103)	Usp9y (ENSMUSG00000069044) ##21	Ddx3y (ENSMUSG00000069045) ##22	Uty (ENSMUSG00000068457)	Eif2s3y (ENSMUSG00000069049)	Kdm5d (ENSMUSG00000056673)	Uba1y (ENSMUSG00000069053)	Zfy1 (ENSMUSG00000053211)
Mus_C	ANCESTRAL SPECIES	68															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Steppe mouse	MODERN SPECIES	1707															ENSMSIG00000018877 ##21	Ddx3y (ENSMSIG00000018968) ##22
Rat	MODERN SPECIES	47											ENSRNOG00000069552	ENSRNOG00000065605	ENSRNOG00000067676	AC242615.2 (ENSRNOG00000062169)	Usp9y (ENSRNOG00000058664) ##21	Ddx3 (ENSRNOG00000057231) ##22	Uty (ENSRNOG00000060617)	Eif2s3y (ENSRNOG00000060048)	LOC103694557 (ENSRNOG00000070228)	ENSRNOG00000069052	LOC120099577 (ENSRNOG00000068692)	LOC103694554 (ENSRNOG00000066858)	ENSRNOG00000069947	ENSRNOG00000063560	Kdm5d (ENSRNOG00000060496)	ENSRNOG00000062567	Uba1y (ENSRNOG00000063279)	Rbmy1j (ENSRNOG00000060963)	LOC120099582 (ENSRNOG00000066009)
Rodentia_A	ANCESTRAL SPECIES	83															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000154443.b.b ##22
Guinea pig	MODERN SPECIES	92																ENSCPOG00000020978 ##22	IFTAP (ENSCPOG00000012798)	RAG2 (ENSCPOG00000020441)	RAG1 (ENSCPOG00000004516)	TRAF6 (ENSCPOG00000004507)	PRR5L (ENSCPOG00000030786)	COMMD9 (ENSCPOG00000010648)	LDLRAD3 (ENSCPOG00000035009)	TRIM44 (ENSCPOG00000011263)	FJX1 (ENSCPOG00000022249)	PAMR1 (ENSCPOG00000007812)	SLC1A2 (ENSCPOG00000007801)	CD44 (ENSCPOG00000007792)	PDHX (ENSCPOG00000003099)	APIP (ENSCPOG00000003097)	EHF (ENSCPOG00000012596)
Sciuridae	ANCESTRAL SPECIES	56															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00390000005717	ENSGT00940000155212	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a	ENSGT00940000162022	ENSGT00940000161153	ENSGT00390000014753.h	ENSGT00940000156607.a.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.b	ENSGT00940000159832	ENSGT00940000159942.a	ENSGT00940000162925	ENSGT00940000163319
Marmotini	ANCESTRAL SPECIES	94															ENSGT00940000155375.d ##21	ENSGT00940000154443.b.b ##22	ENSGT00940000155202.i.a	ENSGT00390000005717	ENSGT00940000155212	ENSGT00390000016722	ENSGT00940000153421.a.a.a.a.b	ENSGT00440000033720.a	ENSGT00940000162022	ENSGT00940000161153	ENSGT00390000014753.h	ENSGT00940000156607.a.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.b	ENSGT00940000159832	ENSGT00940000159942.a	ENSGT00940000162925	ENSGT00940000161140
Alpin marmot	MODERN SPECIES	102														ENSMMMG00000022486	USP9Y (ENSMMMG00000022494) ##21	DDX3Y (ENSMMMG00000022509) ##22	ENSMMMG00000022521	UTY (ENSMMMG00000022708)	ENSMMMG00000024639	ENSMMMG00000024640	ENSMMMG00000024641	GPR143 (ENSMMMG00000024643)	ENSMMMG00000024644	ANOS1 (ENSMMMG00000024646)	PNPLA4 (ENSMMMG00000024647)	STS (ENSMMMG00000024648)	PUDP (ENSMMMG00000024649)	ENSMMMG00000024650	PRKX (ENSMMMG00000024651)	MXRA5 (ENSMMMG00000024652)	ARSH (ENSMMMG00000024653)
Eurasian red squirrel	MODERN SPECIES	157	ENSSVLG00005011105	ENSSVLG00005011061	ENSSVLG00005010995	ENSSVLG00005010941	ENSSVLG00005010909	ENSSVLG00005010831	KDM5D (ENSSVLG00005010414)	ENSSVLG00005025726	XKR3 (ENSSVLG00005025720)	ENSSVLG00005025717	ENSSVLG00005025707	ENSSVLG00005025686	ENSSVLG00005025664	ENSSVLG00005025652	USP9Y (ENSSVLG00005025623) ##21	DDX3Y (ENSSVLG00005025598) ##22	ENSSVLG00005025570	UTY (ENSSVLG00005025292)	ENSSVLG00005025090	ENSSVLG00005025081	ENSSVLG00005025064
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154443.a ##22
Giant Panda	MODERN SPECIES	796																ENSAMEG00000024681 ##22
Marsupialia	ANCESTRAL SPECIES	23	ENSGT00940000155009.h #7	ENSGT00940000155009.g.b #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00940000161070	ENSGT00940000154267.B
Opossum	MODERN SPECIES	3	CYBB (ENSMODG00000021110)	ENSMODG00000040016	ENSMODG00000037846 #7	SYTL5 (ENSMODG00000021108) #8	SRPX (ENSMODG00000021107)	ENSMODG00000021106 #9	OTC (ENSMODG00000021104) #10	ENSMODG00000027349	TSPAN7 (ENSMODG00000021103) #12	MID1IP1 (ENSMODG00000025295) #13	BCOR (ENSMODG00000021102) #15	ATP6AP2 (ENSMODG00000021101) #17	CXorf38 (ENSMODG00000021100) #19	MED14 (ENSMODG00000021099) #20	ENSMODG00000021098 #21	ENSMODG00000021097 #22	NYX (ENSMODG00000025311) #23	GPR34 (ENSMODG00000025313) #24	GPR82 (ENSMODG00000025314) #25	ENSMODG00000027545	CASK (ENSMODG00000021095) #26	ENSMODG00000021094	MAOA (ENSMODG00000021093) #30	MAOB (ENSMODG00000021092) #31	NDP (ENSMODG00000050774) #32	EFHC2 (ENSMODG00000021090) #35	FUNDC1 (ENSMODG00000047383) #36	ENSMODG00000021087	DIPK2B (ENSMODG00000021086)	DNMT3L (ENSMODG00000021084)	ENSMODG00000029138
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000155009.h #7	ENSGT00940000155009.g.b #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00940000161070	ENSGT00940000157240.k
Diprotodontia	ANCESTRAL SPECIES	47	ENSGT00940000160244	ENSGT00940000155009.g.b #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Diprotodontia_a	ANCESTRAL SPECIES	44	ENSGT00940000155009.g.a #7	ENSGT00940000155009.g.b #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616.`d #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00940000163590 #18	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000161545 #31	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Common wonbat	MODERN SPECIES	1045	XK (ENSVURG00010001487)	CYBB (ENSVURG00010001492)	ENSVURG00010001501 #7	SYTL5 (ENSVURG00010001564) #8	SRPX (ENSVURG00010001650)	ENSVURG00010001658 #9	OTC (ENSVURG00010001699) #10	TSPAN7 (ENSVURG00010001721) #12	MID1IP1 (ENSVURG00010001731) #13	BCOR (ENSVURG00010001750) #15	ATP6AP2 (ENSVURG00010001783) #17	ENSVURG00010001857 #18	CXorf38 (ENSVURG00010001865) #19	MED14 (ENSVURG00010001935) #20	ENSVURG00010002143 #21	ENSVURG00010002608 #22	NYX (ENSVURG00010002738) #23	CASK (ENSVURG00010002778) #26	GPR34 (ENSVURG00010002909) #24	GPR82 (ENSVURG00010002911) #25	MAOA (ENSVURG00010002971) #30	MAOB (ENSVURG00010003002) #31	NDP (ENSVURG00010003022) #32	EFHC2 (ENSVURG00010003046) #35	FUNDC1 (ENSVURG00010003091) #36	ENSVURG00010003150	DIPK2B (ENSVURG00010003252)	ENSVURG00010003287	ENSVURG00010003299	ENSVURG00010003320	GATD3 (ENSVURG00010003329)
koala	MODERN SPECIES	171					ENSPCIG00000033898	ENSPCIG00000026765	ENSPCIG00000028677	BCOR (ENSPCIG00000028680) #15	ENSPCIG00000028682	ATP6AP2 (ENSPCIG00000026472) #17	ENSPCIG00000026471 #18	CXorf38 (ENSPCIG00000026470) #19	MED14 (ENSPCIG00000026469) #20	ENSPCIG00000031419	ENSPCIG00000007577 #21	ENSPCIG00000000219 #22	NYX (ENSPCIG00000027323) #23	GPR34 (ENSPCIG00000027440) #24	GPR82 (ENSPCIG00000027441) #25	CASK (ENSPCIG00000027325) #26
Wallaby	MODERN SPECIES	103																ENSMEUG00000006501 #22
Tasmanian devil	MODERN SPECIES	2	DYNLT3 (ENSSHAG00000024546) #7	SYTL5 (ENSSHAG00000005032) #8	SRPX (ENSSHAG00000001996)	ENSSHAG00000000010	ENSSHAG00000026580 #9	OTC (ENSSHAG00000013760) #10	TSPAN7 (ENSSHAG00000012655) #12	MID1IP1 (ENSSHAG00000031170) #13	ENSSHAG00000022083	BCOR (ENSSHAG00000010865) #15	ENSSHAG00000028827	ATP6AP2 (ENSSHAG00000005689) #17	ENSSHAG00000031563 #18	MED14 (ENSSHAG00000003470) #20	ENSSHAG00000008762 #21	ENSSHAG00000007623 #22	NYX (ENSSHAG00000024777) #23	GPR34 (ENSSHAG00000025728) #24	GPR82 (ENSSHAG00000006459) #25	ENSSHAG00000002228 #26	ENSSHAG00000025933	MAOA (ENSSHAG00000005829) #30	MAOB (ENSSHAG00000004738) #31	NDP (ENSSHAG00000031625) #32	EFHC2 (ENSSHAG00000008161) #35	FUNDC1 (ENSSHAG00000021844) #36	ENSSHAG00000016657	ENSSHAG00000016401	ENSSHAG00000012209	ENSSHAG00000028182	ENSSHAG00000011047
Platypus	MODERN SPECIES	9	XK (ENSOANG00000007110)	CYBB (ENSOANG00000007111)	DYNLT3 (ENSOANG00000007112) #7	SYTL5 (ENSOANG00000007114) #8	SRPX (ENSOANG00000007116)	ENSOANG00000007117 #9	OTC (ENSOANG00000007118) #10	TSPAN7 (ENSOANG00000005230) #12	ENSOANG00000048021 #13	BCOR (ENSOANG00000011281) #15	ATP6AP2 (ENSOANG00000046394) #17	ENSOANG00000046445	MED14 (ENSOANG00000011278) #20	ENSOANG00000045652	ENSOANG00000011275 #21	ENSOANG00000011274 #22	GPR34 (ENSOANG00000011272) #24	GPR82 (ENSOANG00000011271) #25	CASK (ENSOANG00000011267) #26	MAOA (ENSOANG00000006490) #30	MAOB (ENSOANG00000006486) #31	NDP (ENSOANG00000040395) #32	EFHC2 (ENSOANG00000006483) #35	FUNDC1 (ENSOANG00000006482) #36	ENSOANG00000006481	DIPK2B (ENSOANG00000051110)	ENSOANG00000049122	ENSOANG00000046692	GATD3 (ENSOANG00000006478)	PWP2 (ENSOANG00000006477)	ENSOANG00000045507
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT01050000245294	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a
Aves	ANCESTRAL SPECIES		ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Neognathae	ANCESTRAL SPECIES	1	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Neognathae_b	ANCESTRAL SPECIES		ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Flycatcher	MODERN SPECIES		XK (ENSFALG00000028337)	CYBB (ENSFALG00000001596)	DYNLT3 (ENSFALG00000028099) #7	SYTL5 (ENSFALG00000001593) #8	SRPX (ENSFALG00000001588)	OTC (ENSFALG00000001568) #10	TSPAN7 (ENSFALG00000001555) #12	MID1IP1 (ENSFALG00000014532) #13	BCOR (ENSFALG00000001552) #15	ENSFALG00000028892	ATP6AP2 (ENSFALG00000001550) #17	MED14 (ENSFALG00000001545) #20	ENSFALG00000028154	ENSFALG00000001538 #21	ENSFALG00000001533	ENSFALG00000001530 #22	NYX (ENSFALG00000014515) #23	GPR34 (ENSFALG00000014501) #24	CASK (ENSFALG00000001525) #26	ENSFALG00000024766	MAOA (ENSFALG00000001499) #30	ENSFALG00000001480	EFHC2 (ENSFALG00000001472) #35	FUNDC1 (ENSFALG00000001471) #36	ENSFALG00000001470	ENSFALG00000001469	ICOSLG (ENSFALG00000012321)	ENSFALG00000024438	GATD3 (ENSFALG00000012311)	PWP2 (ENSFALG00000012300)	TRAPPC10 (ENSFALG00000012289)
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a
Zebra finch	MODERN SPECIES		PRRG1 (ENSTGUG00000023878)	LANCL3 (ENSTGUG00000020123)	XK (ENSTGUG00000022942)	CYBB (ENSTGUG00000006788)	DYNLT3 (ENSTGUG00000027281) #7	SYTL5 (ENSTGUG00000006759) #8	SRPX (ENSTGUG00000006739)	RPGR (ENSTGUG00000006724) #9	OTC (ENSTGUG00000006707) #10	TSPAN7 (ENSTGUG00000006670) #12	BCOR (ENSTGUG00000006646) #15	ATP6AP2 (ENSTGUG00000006635) #17	MED14 (ENSTGUG00000006619) #20	ENSTGUG00000006522 #21	RPL8 (ENSTGUG00000006502)	ENSTGUG00000006442 #22	NYX (ENSTGUG00000006438) #23	CASK (ENSTGUG00000006375) #26	GPR34 (ENSTGUG00000006433) #24	GPR82 (ENSTGUG00000006431) #25	MAOA (ENSTGUG00000006274) #30	ENSTGUG00000006169	ENSTGUG00000023894	EFHC2 (ENSTGUG00000006145) #35	FUNDC1 (ENSTGUG00000006139) #36	ENSTGUG00000006075	DIPK2B (ENSTGUG00000006067)	ENSTGUG00000006063	GATD3 (ENSTGUG00000006045)	PWP2 (ENSTGUG00000005996)	TRAPPC10 (ENSTGUG00000005983)
Common canary	MODERN SPECIES	11	ENSSCAG00000011616	PRRG1 (ENSSCAG00000011600)	LANCL3 (ENSSCAG00000011596)	XK (ENSSCAG00000011594)	CYBB (ENSSCAG00000011590)	DYNLT3 (ENSSCAG00000011589) #7	SYTL5 (ENSSCAG00000011582) #8	SRPX (ENSSCAG00000011573)	RPGR (ENSSCAG00000011562) #9	ENSSCAG00000011558	TSPAN7 (ENSSCAG00000011549) #12	MID1IP1 (ENSSCAG00000011544) #13	BCOR (ENSSCAG00000011536) #15	ENSSCAG00000011516 #21	RPL8 (ENSSCAG00000011507)	ENSSCAG00000011500 #22	NYX (ENSSCAG00000011494) #23	GPR34 (ENSSCAG00000011492) #24	GPR82 (ENSSCAG00000011488) #25	CASK (ENSSCAG00000011458) #26	MAOA (ENSSCAG00000011441) #30	ENSSCAG00000011433	ENSSCAG00000011430	EFHC2 (ENSSCAG00000011425) #35	FUNDC1 (ENSSCAG00000011418) #36	ENSSCAG00000011378	DIPK2B (ENSSCAG00000011357)	ENSSCAG00000011328	ENSSCAG00000011316	GATD3 (ENSSCAG00000011312)	PWP2 (ENSSCAG00000011297)
Medium ground finch	MODERN SPECIES	77	PRRG1 (ENSGFOG00000011274)	ENSGFOG00000011277	CYBB (ENSGFOG00000011281)	DYNLT3 (ENSGFOG00000011333) #7	SYTL5 (ENSGFOG00000011338) #8	SRPX (ENSGFOG00000011347)	RPGR (ENSGFOG00000011376) #9	OTC (ENSGFOG00000011383) #10	TSPAN7 (ENSGFOG00000011401) #12	BCOR (ENSGFOG00000011411) #15	ENSGFOG00000011425	ATP6AP2 (ENSGFOG00000011434) #17	MED14 (ENSGFOG00000011449) #20	ENSGFOG00000011466 #21	RPL8 (ENSGFOG00000011502)	ENSGFOG00000011577 #22	NYX (ENSGFOG00000012975) #23	CASK (ENSGFOG00000012986) #26	GPR34 (ENSGFOG00000013037) #24	GPR82 (ENSGFOG00000013040) #25	ENSGFOG00000013043
Great tit	MODERN SPECIES		XK (ENSPMJG00000011123)	CYBB (ENSPMJG00000011120)	DYNLT3 (ENSPMJG00000011119) #7	SYTL5 (ENSPMJG00000011112) #8	SRPX (ENSPMJG00000011102)	RPGR (ENSPMJG00000011101) #9	OTC (ENSPMJG00000011100) #10	TSPAN7 (ENSPMJG00000011099) #12	MID1IP1 (ENSPMJG00000011079) #13	BCOR (ENSPMJG00000011039) #15	ATP6AP2 (ENSPMJG00000011009) #17	ENSPMJG00000011008	MED14 (ENSPMJG00000011006) #20	ENSPMJG00000010988 #21	RPL8 (ENSPMJG00000010969)	ENSPMJG00000010965 #22	NYX (ENSPMJG00000010964) #23	GPR34 (ENSPMJG00000010963) #24	GPR82 (ENSPMJG00000010961) #25	CASK (ENSPMJG00000010956) #26	MAOA (ENSPMJG00000010926) #30	ENSPMJG00000010923	ENSPMJG00000010884	ENSPMJG00000010883	EFHC2 (ENSPMJG00000010882) #35	FUNDC1 (ENSPMJG00000010881) #36	ENSPMJG00000010877	DIPK2B (ENSPMJG00000010838)	ENSPMJG00000010800	ENSPMJG00000010798	GATD3 (ENSPMJG00000010797)
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Kakapo	MODERN SPECIES	11	LANCL3 (ENSSHBG00005012137)	XK (ENSSHBG00005012120)	CYBB (ENSSHBG00005012082)	DYNLT3 (ENSSHBG00005012057) #7	SYTL5 (ENSSHBG00005012039) #8	SRPX (ENSSHBG00005012000)	ENSSHBG00005011981 #9	OTC (ENSSHBG00005011954) #10	TSPAN7 (ENSSHBG00005011925) #12	MID1IP1 (ENSSHBG00005011919) #13	BCOR (ENSSHBG00005011884) #15	ATP6AP2 (ENSSHBG00005011811) #17	MED14 (ENSSHBG00005011636) #20	ENSSHBG00005011490 #21	RPL8 (ENSSHBG00005011456)	ENSSHBG00005011417 #22	NYX (ENSSHBG00005011405) #23	GPR34 (ENSSHBG00005011397) #24	GPR82 (ENSSHBG00005011382) #25	CASK (ENSSHBG00005011323) #26	MAOA (ENSSHBG00005011266) #30	ENSSHBG00005011242	ENSSHBG00005011220	EFHC2 (ENSSHBG00005011127) #35	FUNDC1 (ENSSHBG00005011082) #36	ENSSHBG00005010530	DIPK2B (ENSSHBG00005010284)	ICOSLG (ENSSHBG00005010235)	ENSSHBG00005010205	GATD3 (ENSSHBG00005010181)	PWP2 (ENSSHBG00005010009)
Golden eagle	MODERN SPECIES	23	LANCL3 (ENSACCG00020002008)	XK (ENSACCG00020001992)	CYBB (ENSACCG00020001963)	DYNLT3 (ENSACCG00020001948) #7	SYTL5 (ENSACCG00020001928) #8	SRPX (ENSACCG00020001907)	RPGR (ENSACCG00020001852) #9	OTC (ENSACCG00020001784) #10	TSPAN7 (ENSACCG00020001754) #12	MID1IP1 (ENSACCG00020001728) #13	BCOR (ENSACCG00020001710) #15	ATP6AP2 (ENSACCG00020001686) #17	MED14 (ENSACCG00020001656) #20	ENSACCG00020001597 #21	RPL8 (ENSACCG00020001569)	ENSACCG00020001544 #22	NYX (ENSACCG00020001529) #23	GPR34 (ENSACCG00020001520) #24	GPR82 (ENSACCG00020001511) #25	CASK (ENSACCG00020001395) #26	MAOA (ENSACCG00020001289) #30	ENSACCG00020001263	ENSACCG00020001244	EFHC2 (ENSACCG00020001221) #35	FUNDC1 (ENSACCG00020001207) #36	ENSACCG00020001083	DIPK2B (ENSACCG00020000932)	ICOSLG (ENSACCG00020000802)	GATD3 (ENSACCG00020000749)	PWP2 (ENSACCG00020000686)	TRAPPC10 (ENSACCG00020000627)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Phasianidae	ANCESTRAL SPECIES		ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.b	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Japanese quail	MODERN SPECIES		XK (ENSCJPG00005016901)	CYBB (ENSCJPG00005016900)	DYNLT3 (ENSCJPG00005016899) #7	SYTL5 (ENSCJPG00005016856) #8	SRPX (ENSCJPG00005016855)	RPGR (ENSCJPG00005016852) #9	OTC (ENSCJPG00005016851) #10	TSPAN7 (ENSCJPG00005016849) #12	ENSCJPG00005016827	MID1IP1 (ENSCJPG00005016826) #13	BCOR (ENSCJPG00005016737) #15	ATP6AP2 (ENSCJPG00005016734) #17	MED14 (ENSCJPG00005016643) #20	ENSCJPG00005012674 #21	RPL8 (ENSCJPG00005012636)	ENSCJPG00005012635 #22	NYX (ENSCJPG00005012634) #23	GPR34 (ENSCJPG00005012633) #24	GPR82 (ENSCJPG00005012632) #25	CASK (ENSCJPG00005012631) #26	MAOA (ENSCJPG00005012625) #30	ENSCJPG00005012624	ENSCJPG00005012623	EFHC2 (ENSCJPG00005012621) #35	FUNDC1 (ENSCJPG00005012620) #36	ENSCJPG00005009018	DIPK2B (ENSCJPG00005008983)	ICOSLG (ENSCJPG00005008975)	PWP2 (ENSCJPG00005008782)	TRAPPC10 (ENSCJPG00005008778)	AGPAT3 (ENSCJPG00005008761)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.a	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a	ENSGT00550000074981
Turkey	MODERN SPECIES		ENSMGAG00000013790	PARVB (ENSMGAG00000013796)	ENSMGAG00000013802	MCAT (ENSMGAG00000013768)	ENSMGAG00000020083	ENSMGAG00000013772	TSPO (ENSMGAG00000013769)	SCUBE1 (ENSMGAG00000013781)	ENSMGAG00000020912	ENSMGAG00000013766	ENSMGAG00000021234	ATP6AP2 (ENSMGAG00000014614) #17	MED14 (ENSMGAG00000014613) #20	ENSMGAG00000014611 #21	ENSMGAG00000014610	ENSMGAG00000014609 #22	NYX (ENSMGAG00000015465) #23	GPR34 (ENSMGAG00000019677) #24	GPR82 (ENSMGAG00000020904) #25	ENSMGAG00000014607 #26	ENSMGAG00000014573	RSPH1 (ENSMGAG00000014578)	UBASH3A (ENSMGAG00000014576)	ENSMGAG00000014575	TFF2 (ENSMGAG00000014574)	SLC37A1 (ENSMGAG00000014579)	ENSMGAG00000014580	ENSMGAG00000014577	ENSMGAG00000014581	ENSMGAG00000014582	ENSMGAG00000014586
Chicken	MODERN SPECIES		PRRG1 (ENSGALG00010002310)	XK (ENSGALG00010001878)	CYBB (ENSGALG00010001865)	DYNLT3 (ENSGALG00010002978) #7	SYTL5 (ENSGALG00010002935) #8	SRPX (ENSGALG00010002840)	RPGR (ENSGALG00010003719) #9	OTC (ENSGALG00010002770) #10	TSPAN7 (ENSGALG00010002725) #12	MID1IP1 (ENSGALG00010002623) #13	BCOR (ENSGALG00010002571) #15	ATP6AP2 (ENSGALG00010002546) #17	MED14 (ENSGALG00010002528) #20	USP9Y (ENSGALG00010002504) #21	RPL8 (ENSGALG00010002492)	DDX3X (ENSGALG00010002476) #22	NYX (ENSGALG00010002455) #23	GPR34 (ENSGALG00010002434) #24	GPR82 (ENSGALG00010002439) #25	CASK (ENSGALG00010002424) #26	MAOA (ENSGALG00010011546) #30	MAOB (ENSGALG00010011533)	NDP (ENSGALG00010011475)	EFHC2 (ENSGALG00010011468) #35	FUNDC1 (ENSGALG00010011440) #36	ENSGALG00010011421	C1HXORF36 (ENSGALG00010009786)	ICOSLG (ENSGALG00010012041)	ENSGALG00010011985	GATD3A (ENSGALG00010011977)	PWP2 (ENSGALG00010014726)
Anatidae	ANCESTRAL SPECIES	6	ENSGT00530000063186.a	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00390000004304 #32	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000161590	ENSGT01040000241275	ENSGT00390000003706.a.a
Pink-footed goose	MODERN SPECIES	12	DYNLT3 (ENSABRG00000009482) #7	ENSABRG00000009495	SYTL5 (ENSABRG00000009499) #8	SRPX (ENSABRG00000009514)	RPGR (ENSABRG00000009520) #9	OTC (ENSABRG00000009549) #10	TSPAN7 (ENSABRG00000009569) #12	ENSABRG00000009578	MID1IP1 (ENSABRG00000009582) #13	BCOR (ENSABRG00000009596) #15	ATP6AP2 (ENSABRG00000009630) #17	MED14 (ENSABRG00000009636) #20	ENSABRG00000009680	ENSABRG00000009718 #21	RPL8 (ENSABRG00000010296)	ENSABRG00000010314 #22	NYX (ENSABRG00000010347) #23	CASK (ENSABRG00000010365) #26	GPR34 (ENSABRG00000010454) #24	MAOA (ENSABRG00000010487) #30	ENSABRG00000010502	ENSABRG00000010523	EFHC2 (ENSABRG00000010543) #35	FUNDC1 (ENSABRG00000010568) #36	ENSABRG00000010917	DIPK2B (ENSABRG00000014660)	ICOSLG (ENSABRG00000014688)	GATD3 (ENSABRG00000014692)	PWP2 (ENSABRG00000014711)	TRAPPC10 (ENSABRG00000014839)	AGPAT3 (ENSABRG00000014898)
Duck	MODERN SPECIES		CYBB (ENSAPLG00000008961)	DYNLT3 (ENSAPLG00000031155) #7	SYTL5 (ENSAPLG00000009713) #8	ENSAPLG00000027765	SRPX (ENSAPLG00000009886)	RPGR (ENSAPLG00000010057) #9	OTC (ENSAPLG00000010113) #10	TSPAN7 (ENSAPLG00000010353) #12	MID1IP1 (ENSAPLG00000024750) #13	ENSAPLG00000022499	BCOR (ENSAPLG00000004502) #15	ATP6AP2 (ENSAPLG00000015929) #17	MED14 (ENSAPLG00000015774) #20	ENSAPLG00000014792 #21	RPL8 (ENSAPLG00000014582)	ENSAPLG00000014240 #22	NYX (ENSAPLG00000002105) #23	CASK (ENSAPLG00000013996) #26	GPR34 (ENSAPLG00000002101) #24	GPR82 (ENSAPLG00000019460) #25	MAOA (ENSAPLG00000013230) #30	ENSAPLG00000012540	NDP (ENSAPLG00000030151) #32	EFHC2 (ENSAPLG00000012158) #35	FUNDC1 (ENSAPLG00000012067) #36	ENSAPLG00000027576	ENSAPLG00000011033	DIPK2B (ENSAPLG00000010917)	ICOSLG (ENSAPLG00000010902)	ENSAPLG00000010861	GATD3 (ENSAPLG00000018842)
African ostrich	MODERN SPECIES	217											ATP6AP2 (ENSSCUG00000003823) #17	MED14 (ENSSCUG00000003813) #20	ENSSCUG00000003805 #21	ENSSCUG00000003799	ENSSCUG00000003796	ENSSCUG00000003784 #22	NYX (ENSSCUG00000003775) #23	ENSSCUG00000003715 #26
Australian saltwater crocodile	MODERN SPECIES	27	CYBB (ENSCPRG00005002940)	DYNLT3 (ENSCPRG00005002934) #7	SYTL5 (ENSCPRG00005002904) #8	SRPX (ENSCPRG00005002901)	RPGR (ENSCPRG00005002844) #9	OTC (ENSCPRG00005002828) #10	TSPAN7 (ENSCPRG00005002808) #12	MID1IP1 (ENSCPRG00005002803) #13	BCOR (ENSCPRG00005002755) #15	ATP6AP2 (ENSCPRG00005002720) #17	CXorf38 (ENSCPRG00005002714) #19	MED14 (ENSCPRG00005002703) #20	ENSCPRG00005002699	ENSCPRG00005000793 #21	RPL8 (ENSCPRG00005000443)	ENSCPRG00005000367 #22	NYX (ENSCPRG00005000354) #23	GPR34 (ENSCPRG00005000263) #24	GPR82 (ENSCPRG00005017600) #25	CASK (ENSCPRG00005017561) #26	MAOA (ENSCPRG00005017529) #30	ENSCPRG00005017515	ENSCPRG00005017509	EFHC2 (ENSCPRG00005017502) #35	FUNDC1 (ENSCPRG00005017487) #36	ENSCPRG00005016852	DIPK2B (ENSCPRG00005016544)	DNMT3L (ENSCPRG00005016525)	ICOSLG (ENSCPRG00005016520)	ENSCPRG00005016512	GATD3 (ENSCPRG00005016510)
Cryptodira	ANCESTRAL SPECIES		ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00390000003231.b	ENSGT00940000160244.a	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.e	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Emydidae	ANCESTRAL SPECIES	28	ENSGT00390000003231.b	ENSGT00940000160244.a	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.e	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	7				ENSTMTG00000000024 #8	ENSTMTG00000000130	ENSTMTG00000000356 #9	ENSTMTG00000000385 #10	ENSTMTG00000000411 #12	ENSTMTG00000000430 #13	ENSTMTG00000000489 #15	ENSTMTG00000000644 #17	ENSTMTG00000000659 #19	ENSTMTG00000000692 #20	ENSTMTG00000000802 #21	ENSTMTG00000001142	ENSTMTG00000001163 #22	ENSTMTG00000001207 #23	ENSTMTG00000001227 #26	GPR34 (ENSTMTG00000001312) #24	ENSTMTG00000001318 #25	ENSTMTG00000001327 #30	ENSTMTG00000001354	ENSTMTG00000001430	ENSTMTG00000001440 #35	FUNDC1 (ENSTMTG00000001463) #36	ENSTMTG00000001519	ENSTMTG00000001694	ENSTMTG00000001711	ENSTMTG00000001720	ENSTMTG00000001725	ENSTMTG00000001731
Three-toed box turtle	MODERN SPECIES	9			ENSTMTG00000007477 #8	ENSTMTG00000007508	ENSTMTG00000007736 #9	ENSTMTG00000007747 #10	ENSTMTG00000007789 #12	ENSTMTG00000007810 #13	ENSTMTG00000007822 #15	ENSTMTG00000007888	ENSTMTG00000007910 #17	ENSTMTG00000007931 #19	ENSTMTG00000007954 #20	ENSTMTG00000008086 #21	ENSTMTG00000009889	ENSTMTG00000009906 #22	ENSTMTG00000009979 #23	ENSTMTG00000010016 #26	ENSTMTG00000010302 #25	ENSTMTG00000010314 #30	ENSTMTG00000011563	ENSTMTG00000011586	ENSTMTG00000011592	ENSTMTG00000011611 #35	ENSTMTG00000011695 #36	ENSTMTG00000011738	ENSTMTG00000011930	ENSTMTG00000011970	ENSTMTG00000011991	ENSTMTG00000012004	ENSTMTG00000012016
painted turtle	MODERN SPECIES	755											ATP6AP2 (ENSCPBG00000007981) #17	CXorf38 (ENSCPBG00000007998) #19	MED14 (ENSCPBG00000008020) #20	ENSCPBG00000008737 #21	RPL8 (ENSCPBG00000019912)	ENSCPBG00000019916 #22	NYX (ENSCPBG00000019918) #23	CASK (ENSCPBG00000019922) #26	GPR34 (ENSCPBG00000019929) #24	GPR82 (ENSCPBG00000019931) #25	MAOA (ENSCPBG00000019935) #30	ENSCPBG00000019936	ENSCPBG00000019938	EFHC2 (ENSCPBG00000019941) #35	FUNDC1 (ENSCPBG00000019947) #36	ENSCPBG00000019948	DIPK2B (ENSCPBG00000019950)	DNMT3L (ENSCPBG00000019955)	ENSCPBG00000019956	ENSCPBG00000019965	ENSCPBG00000020050
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000154194.j	ENSGT00950000185494	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00900000143309	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT01060000248589.C #24	ENSGT00990000203619.A.a #25	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.e	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981
Goode s thornscrub tortoise	MODERN SPECIES		CYBB (ENSGEVG00005004006)	DYNLT3 (ENSGEVG00005004036) #7	SYTL5 (ENSGEVG00005004057) #8	SRPX (ENSGEVG00005004078)	OTC (ENSGEVG00005004101) #10	TSPAN7 (ENSGEVG00005004133) #12	MID1IP1 (ENSGEVG00005004153) #13	ENSGEVG00005004163	BCOR (ENSGEVG00005004258) #15	ATP6AP2 (ENSGEVG00005004331) #17	CXorf38 (ENSGEVG00005004344) #19	MED14 (ENSGEVG00005004375) #20	ENSGEVG00005004433	ENSGEVG00005004490 #21	RPL8 (ENSGEVG00005004617)	ENSGEVG00005004661 #22	NYX (ENSGEVG00005004729) #23	CASK (ENSGEVG00005004833) #26	GPR34 (ENSGEVG00005005096) #24	GPR82 (ENSGEVG00005005110) #25	ENSGEVG00005000013	MAOA (ENSGEVG00005000038) #30	ENSGEVG00005000126	ENSGEVG00005000168	EFHC2 (ENSGEVG00005000187) #35	FUNDC1 (ENSGEVG00005000226) #36	ENSGEVG00005000311	DIPK2B (ENSGEVG00005000423)	DNMT3L (ENSGEVG00005000441)	ICOSLG (ENSGEVG00005000470)	GATD3 (ENSGEVG00005000495)
Abingdon island giant tortoise	MODERN SPECIES	184															ENSCABG00000019320	ENSCABG00000018944 #22	ENSCABG00000018890	NYX (ENSCABG00000018888) #23	GPR34 (ENSCABG00000018887) #24	GPR82 (ENSCABG00000018886) #25	CASK (ENSCABG00000018660) #26
Chinese turtle	MODERN SPECIES	1925	DYNLT3 (ENSPSIG00000009975) #7	ENSPSIG00000010132	SYTL5 (ENSPSIG00000010590) #8	SRPX (ENSPSIG00000010787)	RPGR (ENSPSIG00000011226) #9	OTC (ENSPSIG00000013045) #10	ENSPSIG00000014291	TSPAN7 (ENSPSIG00000014341) #12	MID1IP1 (ENSPSIG00000014801) #13	BCOR (ENSPSIG00000014929) #15	ATP6AP2 (ENSPSIG00000015449) #17	CXorf38 (ENSPSIG00000015656) #19	MED14 (ENSPSIG00000005470) #20	ENSPSIG00000007248 #21	RPL8 (ENSPSIG00000010752)	ENSPSIG00000011217 #22	NYX (ENSPSIG00000000735) #23
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000168277	ENSGT00940000155375 #21	ENSGT01050000245294	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a
tuatara	MODERN SPECIES	433			SYTL5 (ENSSPUG00000005997) #8	SRPX (ENSSPUG00000005960)	ENSSPUG00000005942 #9	ENSSPUG00000005844 #9	OTC (ENSSPUG00000005817) #10	TSPAN7 (ENSSPUG00000005608) #12	MID1IP1 (ENSSPUG00000005583) #13	ATP6AP2 (ENSSPUG00000005533) #17	CXorf38 (ENSSPUG00000005520) #19	MED14 (ENSSPUG00000005459) #20	ENSSPUG00000005415 #21	ENSSPUG00000005396	RPL8 (ENSSPUG00000005349)	ENSSPUG00000005312 #22	GPR34 (ENSSPUG00000005284) #24	CASK (ENSSPUG00000005209) #26
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000168277	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873
Laterata	ANCESTRAL SPECIES		ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000168277	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT01060000248589.C #24	ENSGT00530000063582.a	ENSGT00950000183055.a.b	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a
Common wall lizard	MODERN SPECIES	12	DYNLT3 (ENSPMRG00000003925) #7	SYTL5 (ENSPMRG00000003917) #8	ENSPMRG00000003912	SRPX (ENSPMRG00000003903)	RPGR (ENSPMRG00000003884) #9	OTC (ENSPMRG00000003796) #10	TSPAN7 (ENSPMRG00000003780) #12	MID1IP1 (ENSPMRG00000003776) #13	BCOR (ENSPMRG00000003763) #15	ATP6AP2 (ENSPMRG00000003753) #17	CXorf38 (ENSPMRG00000003747) #19	MED14 (ENSPMRG00000003716) #20	ENSPMRG00000003708	ENSPMRG00000003693 #21	RPL8 (ENSPMRG00000003688)	ENSPMRG00000003667 #22	NYX (ENSPMRG00000003663) #23	GPR34 (ENSPMRG00000003660) #24	CASK (ENSPMRG00000003626) #26	MAOA (ENSPMRG00000003608) #30	ENSPMRG00000003590	ENSPMRG00000003579	EFHC2 (ENSPMRG00000003549) #35	FUNDC1 (ENSPMRG00000003536) #36	ENSPMRG00000003527	ENSPMRG00000003409	DIPK2B (ENSPMRG00000003381)	ENSPMRG00000003373	ENSPMRG00000003367	DNMT3L (ENSPMRG00000003361)	ICOSLG (ENSPMRG00000003355)
Argentine black and white tegu	MODERN SPECIES		CYBB (ENSSMRG00000022861)	DYNLT3 (ENSSMRG00000022862) #7	SYTL5 (ENSSMRG00000022863) #8	SRPX (ENSSMRG00000022864)	RPGR (ENSSMRG00000022865) #9	ENSSMRG00000022866	OTC (ENSSMRG00000022867) #10	TSPAN7 (ENSSMRG00000022869) #12	MID1IP1 (ENSSMRG00000022870) #13	BCOR (ENSSMRG00000022873) #15	ATP6AP2 (ENSSMRG00000022876) #17	CXorf38 (ENSSMRG00000022877) #19	MED14 (ENSSMRG00000022878) #20	ENSSMRG00000022879 #21	RPL8 (ENSSMRG00000022880)	ENSSMRG00000022881 #22	NYX (ENSSMRG00000022882) #23	CASK (ENSSMRG00000022883) #26	GPR34 (ENSSMRG00000022884) #24	MAOA (ENSSMRG00000022886) #30	ENSSMRG00000022887	ENSSMRG00000022888	EFHC2 (ENSSMRG00000022889) #35	FUNDC1 (ENSSMRG00000022890) #36	ENSSMRG00000022891	DIPK2B (ENSSMRG00000022892)	DNMT3L (ENSSMRG00000022898)	ICOSLG (ENSSMRG00000022899)	GATD3 (ENSSMRG00000022900)	PWP2 (ENSSMRG00000022901)	TRAPPC10 (ENSSMRG00000022902)
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302	ENSGT00940000159616 #9	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000006290 #19	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a
Lizard	MODERN SPECIES	2	ENSACAG00000037264	ENSACAG00000041547	ENSACAG00000040266	ENSACAG00000044415	BCOR (ENSACAG00000014487) #15	ENSACAG00000036780	ENSACAG00000044616	ATP6AP2 (ENSACAG00000014415) #17	CXorf38 (ENSACAG00000014405) #19	MED14 (ENSACAG00000014283) #20	ENSACAG00000042779	ENSACAG00000040704	ENSACAG00000017937 #21	ENSACAG00000017933	ENSACAG00000038257	ENSACAG00000017928 #22	NYX (ENSACAG00000017927) #23	CASK (ENSACAG00000017924) #26	ENSACAG00000044024	ENSACAG00000036285	GPR34 (ENSACAG00000017926) #24	ENSACAG00000043393	ENSACAG00000044112	MAOA (ENSACAG00000017918) #30	ENSACAG00000017903	ENSACAG00000042802	ENSACAG00000017902	ENSACAG00000045295	EFHC2 (ENSACAG00000017897) #35	FUNDC1 (ENSACAG00000036163) #36	ENSACAG00000044837
Elapidae	ANCESTRAL SPECIES	10	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302.c	ENSGT00940000159616 #9	ENSGT00960000191651	ENSGT00510000047417 #10	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00940000154420.B.e.a
Elapidae_a	ANCESTRAL SPECIES	64	ENSGT00940000158538	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302.c	ENSGT00940000159616 #9	ENSGT00960000191651	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B.jc	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.h	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00940000154420.B.e.a
Acanthophiinae	ANCESTRAL SPECIES	58	ENSGT00940000158538	ENSGT00390000003231.b	ENSGT00940000160244	ENSGT00940000155009 #7	ENSGT00940000158618 #8	ENSGT00940000160302.c	ENSGT00940000159616 #9	ENSGT00960000191651	ENSGT00940000156153 #12	ENSGT00500000044890.a.a #13	ENSGT00940000153737.b #15	ENSGT00390000008856 #17	ENSGT00390000001021 #20	ENSGT00940000155375 #21	ENSGT00940000153244.B.jc	ENSGT00940000154443 #22	ENSGT00940000160782 #23	ENSGT00940000155600.b #26	ENSGT00940000160514 #30	ENSGT00940000166107	ENSGT00940000166930	ENSGT00530000063528.B #35	ENSGT00940000154517 #36	ENSGT00940000155202.j.h	ENSGT00520000055625.a	ENSGT00940000162228	ENSGT00940000161590	ENSGT00390000003706.a.a	ENSGT00550000074981	ENSGT00390000003873	ENSGT00940000154420.B.e.a
Mainland tiger snake	MODERN SPECIES	58							ENSNSUG00000019905 #8	ENSNSUG00000019904	TSPAN7 (ENSNSUG00000019903) #12	MID1IP1 (ENSNSUG00000019902) #13	BCOR (ENSNSUG00000019896) #15	ATP6AP2 (ENSNSUG00000019894) #17	MED14 (ENSNSUG00000019760) #20	ENSNSUG00000019331 #21	ENSNSUG00000019321	ENSNSUG00000019320 #22	NYX (ENSNSUG00000019319) #23	ENSNSUG00000019318 #26	ENSNSUG00000019317	ENSNSUG00000019316	ENSNSUG00000019315 #26	ENSNSUG00000019313 #26	MAOA (ENSNSUG00000019311) #30	ENSNSUG00000019306	ENSNSUG00000019305	EFHC2 (ENSNSUG00000019304) #35	FUNDC1 (ENSNSUG00000019303) #36	ENSNSUG00000019302	ENSNSUG00000007952	DIPK2B (ENSNSUG00000007910)	ENSNSUG00000007895
Eastern brown snake	MODERN SPECIES	62	PRRG1 (ENSPTXG00000010696)	XK (ENSPTXG00000010694)	CYBB (ENSPTXG00000010692)	SYTL5 (ENSPTXG00000010690) #8	SRPX (ENSPTXG00000010686)	RPGR (ENSPTXG00000010681) #9	ENSPTXG00000010680	TSPAN7 (ENSPTXG00000010677) #12	MID1IP1 (ENSPTXG00000010676) #13	BCOR (ENSPTXG00000010672) #15	ATP6AP2 (ENSPTXG00000010670) #17	MED14 (ENSPTXG00000010663) #20	ENSPTXG00000010659	ENSPTXG00000010654 #21	ENSPTXG00000010653	ENSPTXG00000010651 #22	NYX (ENSPTXG00000010650) #23	CASK (ENSPTXG00000010648) #26	ENSPTXG00000010647	MAOA (ENSPTXG00000010646) #30	ENSPTXG00000010645	ENSPTXG00000010643	EFHC2 (ENSPTXG00000010640) #35	FUNDC1 (ENSPTXG00000010639) #36	ENSPTXG00000010638	ENSPTXG00000010636	DIPK2B (ENSPTXG00000010635)	DNMT3L (ENSPTXG00000010633)	ENSPTXG00000010630	GATD3 (ENSPTXG00000010628)	PWP2 (ENSPTXG00000010624)
Blue-lipped sea krait	MODERN SPECIES	2745																ENSLLTG00000002226 #22	NYX (ENSLLTG00000002220) #23
Indian cobra	MODERN SPECIES	4	DYNLT3 (ENSNNAG00000003215) #7	SYTL5 (ENSNNAG00000003249) #8	ENSNNAG00000003271	RPGR (ENSNNAG00000003318) #9	ENSNNAG00000003346	OTC (ENSNNAG00000003359) #10	TSPAN7 (ENSNNAG00000003384) #12	MID1IP1 (ENSNNAG00000003392) #13	ENSNNAG00000003402	BCOR (ENSNNAG00000003419) #15	ENSNNAG00000003520 #17	MED14 (ENSNNAG00000004433) #20	ENSNNAG00000005294 #17	ENSNNAG00000005644 #21	RPL8 (ENSNNAG00000006316)	ENSNNAG00000006345 #22	NYX (ENSNNAG00000006392) #23	CASK (ENSNNAG00000006518) #26	MAOA (ENSNNAG00000007840) #30	ENSNNAG00000008250	ENSNNAG00000008469	EFHC2 (ENSNNAG00000008477) #35	FUNDC1 (ENSNNAG00000008553) #36	ENSNNAG00000008579	ENSNNAG00000008743	DIPK2B (ENSNNAG00000010306)	DNMT3L (ENSNNAG00000010342)	ENSNNAG00000010432	GATD3 (ENSNNAG00000010524)	PWP2 (ENSNNAG00000010729)	TRAPPC10 (ENSNNAG00000011031)