Rodentia ANCESTRAL SPECIES 10 ENSGT00390000015623 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000155616.c.b ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000163202 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000155616.c.b ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 Sciuridae ANCESTRAL SPECIES 28 ENSGT00940000155009 ENSGT00390000015623 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b.q #25 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162233 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Marmotini ANCESTRAL SPECIES 64 ENSGT00940000160244 ENSGT00940000155009 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b.q #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Marmotini_b ANCESTRAL SPECIES 94 ENSGT00940000160244 ENSGT00940000155009 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b.q #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Squirrel MODERN SPECIES 102 SYTL5 (ENSSTOG00000029210) #7 ENSSTOG00000023192 #8 SRPX (ENSSTOG00000007767) #9 ENSSTOG00000022470 #10 OTC (ENSSTOG00000004056) #11 ENSSTOG00000019432 #12 TSPAN7 (ENSSTOG00000012077) #13 MID1IP1 (ENSSTOG00000027194) #14 BCOR (ENSSTOG00000003219) #15 ATP6AP2 (ENSSTOG00000005456) #16 ENSSTOG00000031229 #17 MPC1L (ENSSTOG00000026402) #18 CXorf38 (ENSSTOG00000005469) #19 MED14 (ENSSTOG00000022333) #20 USP9X (ENSSTOG00000000797) #21 DDX3X (ENSSTOG00000008094) #22 ENSSTOG00000029381 #23 NYX (ENSSTOG00000027262) #24 CASK (ENSSTOG00000005927) #25 GPR34 (ENSSTOG00000001566) #26 GPR82 (ENSSTOG00000028760) #27 MAOA (ENSSTOG00000004958) #28 MAOB (ENSSTOG00000004985) #29 NDP (ENSSTOG00000010960) #30 EFHC2 (ENSSTOG00000014917) #31 FUNDC1 (ENSSTOG00000025782) #32 ENSSTOG00000007072 #33 KDM6A (ENSSTOG00000001596) #34 DIPK2B (ENSSTOG00000002326) #35 ENSSTOG00000030183 #36 CHST7 (ENSSTOG00000025227) #37 Arctic ground squirrel MODERN SPECIES 50 XK (ENSUPAG00010017431) CYBB (ENSUPAG00010017438) DYNLT3 (ENSUPAG00010017456) ENSUPAG00010017463 SYTL5 (ENSUPAG00010017470) #7 ENSUPAG00010000022 #10 OTC (ENSUPAG00010000958) #11 ENSUPAG00010000980 #12 TSPAN7 (ENSUPAG00010001001) #13 ENSUPAG00010001115 #15 ATP6AP2 (ENSUPAG00010001133) #16 MPC1L (ENSUPAG00010001147) #18 CXorf38 (ENSUPAG00010001158) #19 MED14 (ENSUPAG00010001193) #20 USP9X (ENSUPAG00010001270) #21 DDX3X (ENSUPAG00010001313) #22 ENSUPAG00010001364 NYX (ENSUPAG00010001369) #24 CASK (ENSUPAG00010001389) #25 GPR34 (ENSUPAG00010001586) #26 GPR82 (ENSUPAG00010001592) #27 ENSUPAG00010001628 MAOA (ENSUPAG00010001649) #28 MAOB (ENSUPAG00010001680) #29 NDP (ENSUPAG00010001702) #30 EFHC2 (ENSUPAG00010001710) #31 ENSUPAG00010001750 Alpin marmot MODERN SPECIES 21 ENSMMMG00000010001 DYNLT3 (ENSMMMG00000010004) ENSMMMG00000010049 #8 SYTL5 (ENSMMMG00000010054) #7 SRPX (ENSMMMG00000010108) #9 ENSMMMG00000010133 #10 OTC (ENSMMMG00000010392) #11 ENSMMMG00000010431 #12 TSPAN7 (ENSMMMG00000010451) #13 BCOR (ENSMMMG00000010519) #15 ATP6AP2 (ENSMMMG00000010656) #16 ENSMMMG00000010690 #17 MPC1L (ENSMMMG00000010695) #18 MED14 (ENSMMMG00000010703) #20 USP9X (ENSMMMG00000010802) #21 DDX3X (ENSMMMG00000010865) #22 ENSMMMG00000010902 ##23 ENSMMMG00000010906 CASK (ENSMMMG00000010916) #25 GPR34 (ENSMMMG00000011165) #26 GPR82 (ENSMMMG00000011172) #27 ENSMMMG00000011202 MAOA (ENSMMMG00000011225) #28 MAOB (ENSMMMG00000011245) #29 NDP (ENSMMMG00000011581) #30 EFHC2 (ENSMMMG00000011586) #31 ENSMMMG00000011611 ENSMMMG00000011619 FUNDC1 (ENSMMMG00000011627) #32 ENSMMMG00000011659 DUSP21 (ENSMMMG00000011667) Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 156 CYBB (ENSSVLG00005019783) DYNLT3 (ENSSVLG00005019706) ENSSVLG00005019604 SYTL5 (ENSSVLG00005019419) #7 SRPX (ENSSVLG00005019058) #9 ENSSVLG00005018959 #10 OTC (ENSSVLG00005018838) #11 ENSSVLG00005018801 #13 MID1IP1 (ENSSVLG00005018779) #14 BCOR (ENSSVLG00005018727) #15 ATP6AP2 (ENSSVLG00005018414) #16 MPC1L (ENSSVLG00005018339) #18 ENSSVLG00005018247 #19 MED14 (ENSSVLG00005018208) #20 USP9X (ENSSVLG00005018130) #21 ENSSVLG00005016422 #22 NYX (ENSSVLG00005016295) #24 GPR34 (ENSSVLG00005016276) #26 GPR82 (ENSSVLG00005016259) #27 CASK (ENSSVLG00005015944) #25 ENSSVLG00005015798 ENSSVLG00005015713 MAOA (ENSSVLG00005015484) #28 MAOB (ENSSVLG00005015336) #29 NDP (ENSSVLG00005015288) #30 EFHC2 (ENSSVLG00005015126) #31 FUNDC1 (ENSSVLG00005015082) #32 DUSP21 (ENSSVLG00005015061) ENSSVLG00005014404 #34 DIPK2B (ENSSVLG00005014249) #35 ENSSVLG00005014200 Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005004485 ENSSVLG00005004455 ENSSVLG00005004422 ENSSVLG00005004408 ENSSVLG00005004400 ENSSVLG00005004387 ENSSVLG00005004363 ZNF582 (ENSSVLG00005004324) ENSSVLG00005004183 ENSSVLG00005004081 ENSSVLG00005004042 ENSSVLG00005004033 ENSSVLG00005004015 ENSSVLG00005004004 ENSSVLG00005003992 ENSSVLG00005003973 #22 ENSSVLG00005003956 ENSSVLG00005003941 ENSSVLG00005003891 ENSSVLG00005003873 ENSSVLG00005003860 ENSSVLG00005003841 ENSSVLG00005003815 ENSSVLG00005003798 ENSSVLG00005003786 ENSSVLG00005003760 ENSSVLG00005003734 ENSSVLG00005003725 PCDH15 (ENSSVLG00005001690) ENSSVLG00005000413 ZWINT (ENSSVLG00005000285) Eurasian red squirrel MODERN SPECIES 75 ENSSVLG00005014321 #22 ENSSVLG00005014368 ENSSVLG00005014406 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000160244 ENSGT00940000155009 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000155600.b #25 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517.i #32 ENSGT00940000161186.B #33 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162233 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Hystricomorpha_a ANCESTRAL SPECIES 56 ENSGT00940000160244 ENSGT00940000155009 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000155600.b #25 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517.i #32 ENSGT00940000161186.B #33 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162231 #37 ENSGT00940000153460.c.a ENSGT00940000158262 Hystricomorpha_b ANCESTRAL SPECIES 112 ENSGT00530000063186.a ENSGT00390000003231.b ENSGT00940000160244 ENSGT00940000155009 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856.d #16 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 Degu DUPLICATION Degu MODERN SPECIES 273 ENSODEG00000001662 BCOR (ENSODEG00000001651) #15 ENSODEG00000001626 ENSODEG00000001615 #16 CXorf38 (ENSODEG00000001590) #19 MED14 (ENSODEG00000001567) #20 ENSODEG00000001539 ENSODEG00000001529 ENSODEG00000001518 ENSODEG00000018682 USP9X (ENSODEG00000001431) #21 ENSODEG00000001355 #22 NYX (ENSODEG00000001332) #24 GPR34 (ENSODEG00000018828) #26 GPR82 (ENSODEG00000002230) #27 CASK (ENSODEG00000002069) #25 Degu MODERN SPECIES 174 CHRM3 (ENSODEG00000018767) ENSODEG00000001479 DIP2C (ENSODEG00000001215) LARP4B (ENSODEG00000001109) ENSODEG00000000996 ENSODEG00000000962 ENSODEG00000018642 IDI1 (ENSODEG00000000876) ENSODEG00000018637 WDR37 (ENSODEG00000000667) ADARB2 (ENSODEG00000000345) PFKP (ENSODEG00000001414) PITRM1 (ENSODEG00000001019) ENSODEG00000018627 ##23 ENSODEG00000000895 ENSODEG00000001314 #22 UPF2 (ENSODEG00000001290) PROSER2 (ENSODEG00000001252) ECHDC3 (ENSODEG00000001170) USP6NL (ENSODEG00000001090) ENSODEG00000001039 CELF2 (ENSODEG00000000887) Long-tailed chinchilla MODERN SPECIES 272 ENSCLAG00000000487 #16 CXorf38 (ENSCLAG00000001694) #19 MED14 (ENSCLAG00000000401) #20 USP9X (ENSCLAG00000000715) #21 DDX3X (ENSCLAG00000000993) #22 NYX (ENSCLAG00000000969) #24 GPR34 (ENSCLAG00000000960) #26 CASK (ENSCLAG00000001067) #25 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 33 ENSCPOG00000020434 SYTL5 (ENSCPOG00000013051) #7 SRPX (ENSCPOG00000013055) #9 ENSCPOG00000023879 #10 OTC (ENSCPOG00000012895) #11 ENSCPOG00000023154 #12 TSPAN7 (ENSCPOG00000000183) #13 MID1IP1 (ENSCPOG00000026903) #14 ENSCPOG00000038948 BCOR (ENSCPOG00000003878) #15 ATP6AP2 (ENSCPOG00000000756) #16 MPC1L (ENSCPOG00000022729) #18 CXorf38 (ENSCPOG00000014304) #19 MED14 (ENSCPOG00000031296) #20 USP9X (ENSCPOG00000033622) #21 ENSCPOG00000013557 #22 NYX (ENSCPOG00000010847) #24 CASK (ENSCPOG00000010851) #25 ENSCPOG00000007290 MAOA (ENSCPOG00000001030) #28 MAOB (ENSCPOG00000000980) #29 NDP (ENSCPOG00000040535) #30 EFHC2 (ENSCPOG00000014599) #31 FUNDC1 (ENSCPOG00000030724) #32 ENSCPOG00000001385 #33 KDM6A (ENSCPOG00000014475) #34 DIPK2B (ENSCPOG00000037434) #35 ENSCPOG00000040315 SI (ENSCPOG00000005878) SLITRK3 (ENSCPOG00000005080) BCHE (ENSCPOG00000004998) Guinea pig MODERN SPECIES 127 CENPH (ENSCPOG00000032206) ENSCPOG00000014629 SLC30A5 (ENSCPOG00000003972) PIK3R1 (ENSCPOG00000007820) ENSCPOG00000039190 #22 CD180 (ENSCPOG00000000757) MAST4 (ENSCPOG00000000754) SREK1 (ENSCPOG00000008925) ERBIN (ENSCPOG00000007387) NLN (ENSCPOG00000007919) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000020528 ENSHGLG00000043721 OTC (ENSHGLG00000006935) #11 ENSHGLG00000020377 #12 TSPAN7 (ENSHGLG00000008684) #13 ENSHGLG00000045058 MID1IP1 (ENSHGLG00000047790) #14 ENSHGLG00000005272 BCOR (ENSHGLG00000004759) #15 ENSHGLG00000044824 ATP6AP2 (ENSHGLG00000009344) #16 MPC1L (ENSHGLG00000020388) #18 CXorf38 (ENSHGLG00000005921) #19 MED14 (ENSHGLG00000005145) #20 USP9X (ENSHGLG00000005613) #21 Ddx3x (ENSHGLG00000004805) #22 ENSHGLG00000034784 NYX (ENSHGLG00000004422) #24 ENSHGLG00000016669 ENSHGLG00000037147 CASK (ENSHGLG00000008006) #25 ENSHGLG00000047643 GPR34 (ENSHGLG00000041208) #26 GPR82 (ENSHGLG00000018778) #27 ENSHGLG00000012354 ENSHGLG00000048297 ENSHGLG00000039815 ENSHGLG00000048133 #28 MAOB (ENSHGLG00000018385) #29 ENSHGLG00000018403 NDP (ENSHGLG00000008619) #30 Naked mole-rat female MODERN SPECIES 11 AQR (ENSHGLG00000013912) ENSHGLG00000043341 ENSHGLG00000018281 ENSHGLG00000014742 ENSHGLG00000039929 ENSHGLG00000018587 ENSHGLG00000006535 SCG5 (ENSHGLG00000007916) GREM1 (ENSHGLG00000005364) ENSHGLG00000041336 FMN1 (ENSHGLG00000014841) ENSHGLG00000035816 ENSHGLG00000002157 ENSHGLG00000037779 ENSHGLG00000018729 ENSHGLG00000010084 #22 AVEN (ENSHGLG00000045851) CHRM5 (ENSHGLG00000037713) EMC7 (ENSHGLG00000033584) ENSHGLG00000008947 ENSHGLG00000037962 EMC4 (ENSHGLG00000048276) ENSHGLG00000018387 SLC12A6 (ENSHGLG00000005061) NOP10 (ENSHGLG00000005973) NUTM1 (ENSHGLG00000002024) LPCAT4 (ENSHGLG00000033090) ENSHGLG00000032473 ENSHGLG00000019869 ENSHGLG00000036469 PARP2 (ENSHGLG00000002524) Rodentia_B ANCESTRAL SPECIES 31 ENSGT00390000015623 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Kangaroo rat MODERN SPECIES 415 Xk (ENSDORG00000002044) Cybb (ENSDORG00000012634) Dynlt3 (ENSDORG00000028646) ENSDORG00000028985 Sytl5 (ENSDORG00000015043) #7 Srpx (ENSDORG00000015046) #9 Rpgr (ENSDORG00000003222) #10 ENSDORG00000014052 #11 ENSDORG00000029598 #13 Mid1ip1 (ENSDORG00000029503) #14 Bcor (ENSDORG00000028994) #15 ENSDORG00000024862 #16 1810030O07Rik (ENSDORG00000005555) #19 Med14 (ENSDORG00000016439) #20 Usp9x (ENSDORG00000002122) #21 Ddx3x (ENSDORG00000029882) #22 ENSDORG00000028747 Myomorpha ANCESTRAL SPECIES 6 ENSGT00390000015623 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153 #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 124 Dynlt3 (ENSJJAG00000000829) ENSJJAG00000003835 Sytl5 (ENSJJAG00000009155) #7 Srpx (ENSJJAG00000012346) #9 Rpgr (ENSJJAG00000014640) #10 Otc (ENSJJAG00000017566) #11 Tspan7 (ENSJJAG00000017974) #13 ENSJJAG00000018161 Mid1ip1 (ENSJJAG00000013196) #14 Bcor (ENSJJAG00000018755) #15 ENSJJAG00000019088 #16 1810030O07Rik (ENSJJAG00000019402) #19 Med14 (ENSJJAG00000020727) #20 E330021D16Rik (ENSJJAG00000013240) Usp9x (ENSJJAG00000023449) #21 Ddx3x (ENSJJAG00000019645) #22 Nyx (ENSJJAG00000020005) #24 Cask (ENSJJAG00000022808) #25 Gpr34 (ENSJJAG00000013331) #26 ENSJJAG00000010094 ENSJJAG00000010651 ENSJJAG00000010745 ENSJJAG00000010951 Maoa (ENSJJAG00000011331) #28 Maob (ENSJJAG00000012262) #29 Ndp (ENSJJAG00000013001) #30 Efhc2 (ENSJJAG00000013365) #31 ENSJJAG00000013961 #32 ENSJJAG00000013443 Kdm6a (ENSJJAG00000016122) #34 Dipk2b (ENSJJAG00000009786) #35 Lesser Egyptian jerboa MODERN SPECIES 183 Mtarc2 (ENSJJAG00000022870) C130074G19Rik (ENSJJAG00000022955) Mark1 (ENSJJAG00000023098) ENSJJAG00000013268 Rab3gap2 (ENSJJAG00000011131) Iars2 (ENSJJAG00000017672) Bpnt1 (ENSJJAG00000021454) Eprs (ENSJJAG00000022291) Slc30a10 (ENSJJAG00000011430) ENSJJAG00000012285 ENSJJAG00000015810 Lyplal1 (ENSJJAG00000015935) Tgfb2 (ENSJJAG00000016341) Rrp15 (ENSJJAG00000016693) ENSJJAG00000017629 ENSJJAG00000017736 #22 Spata17 (ENSJJAG00000018007) Gpatch2 (ENSJJAG00000019244) Muroidea ANCESTRAL SPECIES 30 ENSGT00390000015623 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Upper Galilee mountains blind mole rat MODERN SPECIES 461 Mid1ip1 (ENSNGAG00000012989) #14 ENSNGAG00000013284 #15 ENSNGAG00000014390 #15 ENSNGAG00000017147 Atp6ap2 (ENSNGAG00000014902) #16 1810030O07Rik (ENSNGAG00000018470) #19 Med14 (ENSNGAG00000000544) #20 E330021D16Rik (ENSNGAG00000005804) ENSNGAG00000022683 Usp9x (ENSNGAG00000012060) #21 Ddx3x (ENSNGAG00000018077) #22 Nyx (ENSNGAG00000011629) #24 Cask (ENSNGAG00000008097) #25 Gpr34 (ENSNGAG00000018163) #26 Gpr82 (ENSNGAG00000018110) #27 ENSNGAG00000015190 ENSNGAG00000018371 Maoa (ENSNGAG00000013137) #28 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00390000015623 ENSGT00940000162492 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000162492.e ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.p #15 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545.f #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Cricetidae_B ANCESTRAL SPECIES 45 ENSGT00940000155009 ENSGT00390000015623 ENSGT00940000162492.e ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000164483 ENSGT00940000160514 #28 ENSGT00940000161545.f #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 475 H2ap (ENSPEMG00000025123) ENSPEMG00000010876 Sytl5 (ENSPEMG00000018805) #7 Rpgr (ENSPEMG00000015885) #10 Otc (ENSPEMG00000013040) #11 Tspan7 (ENSPEMG00000013653) #13 Mid1ip1 (ENSPEMG00000025115) #14 ENSPEMG00000012951 Bcor (ENSPEMG00000011517) #15 Atp6ap2 (ENSPEMG00000011119) #16 ENSPEMG00000029718 #18 1810030O07Rik (ENSPEMG00000010471) #19 Med14 (ENSPEMG00000009411) #20 E330021D16Rik (ENSPEMG00000013160) Usp9x (ENSPEMG00000016337) #21 Ddx3x (ENSPEMG00000014021) #22 Nyx (ENSPEMG00000013523) #24 Cask (ENSPEMG00000012945) #25 Gpr34 (ENSPEMG00000010219) #26 Gpr82 (ENSPEMG00000013070) #27 ENSPEMG00000026824 Maoa (ENSPEMG00000006637) #28 Maob (ENSPEMG00000000761) #29 Ndp (ENSPEMG00000031057) #30 Efhc2 (ENSPEMG00000017598) #31 ENSPEMG00000026416 ENSPEMG00000030035 Fundc1 (ENSPEMG00000015857) #32 ENSPEMG00000028041 ENSPEMG00000029572 ENSPEMG00000024903 Northern American deer mouse MODERN SPECIES 2 1700056E22Rik (ENSPEMG00000027598) Dusp10 (ENSPEMG00000022574) Hlx (ENSPEMG00000021851) Mtarc1 (ENSPEMG00000022917) Mtarc2 (ENSPEMG00000008290) C130074G19Rik (ENSPEMG00000031099) Mark1 (ENSPEMG00000023503) Rab3gap2 (ENSPEMG00000009957) Iars2 (ENSPEMG00000000136) Bpnt1 (ENSPEMG00000009846) Eprs (ENSPEMG00000017287) Slc30a10 (ENSPEMG00000011831) Lyplal1 (ENSPEMG00000012126) Tgfb2 (ENSPEMG00000014434) Rrp15 (ENSPEMG00000009408) D1Pas1 (ENSPEMG00000010847) #22 Spata17 (ENSPEMG00000012857) Gpatch2 (ENSPEMG00000018364) Esrrg (ENSPEMG00000024753) Ush2a (ENSPEMG00000011465) Kctd3 (ENSPEMG00000010370) Kcnk2 (ENSPEMG00000003700) ENSPEMG00000030532 Cenpf (ENSPEMG00000008292) Ptpn14 (ENSPEMG00000012598) Smyd2 (ENSPEMG00000016202) ENSPEMG00000029028 Prox1 (ENSPEMG00000005585) ENSPEMG00000025216 ENSPEMG00000006434 Rps6kc1 (ENSPEMG00000008234) Prairie vole DUPLICATION Prairie vole MODERN SPECIES 1 Tspan7 (ENSMOCG00000021984) #13 Mid1ip1 (ENSMOCG00000009515) #14 ENSMOCG00000007720 ENSMOCG00000010154 ENSMOCG00000021216 #15 ENSMOCG00000021841 #15 ENSMOCG00000009697 Atp6ap2 (ENSMOCG00000010803) #16 1810030O07Rik (ENSMOCG00000009974) #19 ENSMOCG00000016696 #20 ENSMOCG00000016742 ENSMOCG00000005802 E330021D16Rik (ENSMOCG00000006042) Usp9x (ENSMOCG00000009609) #21 ENSMOCG00000008046 Ddx3x (ENSMOCG00000014170) #22 Nyx (ENSMOCG00000018188) #24 Cask (ENSMOCG00000007637) #25 Gpr34 (ENSMOCG00000016433) #26 Gpr82 (ENSMOCG00000003874) #27 ENSMOCG00000016039 Lrrc38 (ENSMOCG00000014237) ENSMOCG00000015618 ENSMOCG00000018838 ENSMOCG00000021077 ENSMOCG00000002830 ENSMOCG00000007192 Tmem51 (ENSMOCG00000009847) Fhad1 (ENSMOCG00000015308) Efhd2 (ENSMOCG00000002945) ENSMOCG00000006919 Prairie vole MODERN SPECIES 14 Dusp10 (ENSMOCG00000000398) Hlx (ENSMOCG00000002071) Mtarc1 (ENSMOCG00000003291) Mtarc2 (ENSMOCG00000016564) C130074G19Rik (ENSMOCG00000017582) Mark1 (ENSMOCG00000010578) Rab3gap2 (ENSMOCG00000022853) Iars2 (ENSMOCG00000017822) Bpnt1 (ENSMOCG00000011708) Eprs (ENSMOCG00000012748) ENSMOCG00000016971 Slc30a10 (ENSMOCG00000018487) Lyplal1 (ENSMOCG00000019697) Tgfb2 (ENSMOCG00000022415) Rrp15 (ENSMOCG00000019339) D1Pas1 (ENSMOCG00000002596) #22 Spata17 (ENSMOCG00000006657) Gpatch2 (ENSMOCG00000020821) ENSMOCG00000008935 Esrrg (ENSMOCG00000013956) Kctd3 (ENSMOCG00000021391) Kcnk2 (ENSMOCG00000018400) Cenpf (ENSMOCG00000012377) Ptpn14 (ENSMOCG00000010851) Smyd2 (ENSMOCG00000000847) Prox1 (ENSMOCG00000003310) ENSMOCG00000014377 Rps6kc1 (ENSMOCG00000021401) Angel2 (ENSMOCG00000022027) Vash2 (ENSMOCG00000002399) Flvcr1 (ENSMOCG00000013229) Cricetinae ANCESTRAL SPECIES 4 ENSGT00940000157671 ENSGT00950000183093.C ENSGT00940000162410 ENSGT00940000159665 ENSGT00390000004585 ENSGT00940000157560.e ENSGT00390000005794 ENSGT00550000074910 ENSGT00940000157359 ENSGT00550000074815 ENSGT00900000143215 ENSGT00940000159967 ENSGT00940000159171 ENSGT00940000157390 ENSGT00390000001960 ENSGT00940000154443.b.a #22 ENSGT00390000011270 ENSGT00410000025698.a ENSGT00940000153433.B.a.b ENSGT00940000158456 ENSGT00940000153881.a ENSGT00940000156560 ENSGT00730000111187.b ENSGT00940000156874 ENSGT00940000157082 ENSGT00940000154790.a.a.b ENSGT00940000155656 ENSGT00940000157391 ENSGT00390000012703.a ENSGT01030000234625.B.c ENSGT00390000018676 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 175 ENSCGRG00001011543 Sytl5 (ENSCGRG00001023173) #7 Rpgr (ENSCGRG00001017432) #10 Otc (ENSCGRG00001001226) #11 ENSCGRG00001010548 #12 Tspan7 (ENSCGRG00001017377) #13 Mid1ip1 (ENSCGRG00001009863) #14 ENSCGRG00001003048 Bcor (ENSCGRG00001017450) #15 Atp6ap2 (ENSCGRG00001008860) #16 ENSCGRG00001010043 #18 1810030O07Rik (ENSCGRG00001022070) #19 Med14 (ENSCGRG00001000873) #20 E330021D16Rik (ENSCGRG00001005473) Usp9x (ENSCGRG00001022402) #21 Ddx3x (ENSCGRG00001022185) #22 ENSCGRG00001020496 Nyx (ENSCGRG00001023872) #24 Cask (ENSCGRG00001018099) #25 Gpr34 (ENSCGRG00001009221) #26 Gpr82 (ENSCGRG00001008634) #27 Maoa (ENSCGRG00001003371) #28 Maob (ENSCGRG00001012026) #29 Ndp (ENSCGRG00001012325) #30 Efhc2 (ENSCGRG00001004152) #31 ENSCGRG00001011048 #32 ENSCGRG00001016563 Dusp21 (ENSCGRG00001000819) Kdm6a (ENSCGRG00001023077) #34 Dipk2b (ENSCGRG00001024325) #35 ENSCGRG00001000706 Chinese hamster chok1gshd MODERN SPECIES 2 Hlx (ENSCGRG00001023360) Mtarc1 (ENSCGRG00001018406) Mtarc2 (ENSCGRG00001016855) C130074G19Rik (ENSCGRG00001013262) Mark1 (ENSCGRG00001018044) Rab3gap2 (ENSCGRG00001003478) Iars2 (ENSCGRG00001023111) Bpnt1 (ENSCGRG00001023609) EPRS (ENSCGRG00001009885) Slc30a10 (ENSCGRG00001004526) ENSCGRG00001010835 Lyplal1 (ENSCGRG00001016783) ENSCGRG00001012226 Tgfb2 (ENSCGRG00001021969) Rrp15 (ENSCGRG00001023815) D1Pas1 (ENSCGRG00001002373) #22 Spata17 (ENSCGRG00001019652) Gpatch2 (ENSCGRG00001024577) ENSCGRG00001012111 Esrrg (ENSCGRG00001012185) Ush2a (ENSCGRG00001010994) Kctd3 (ENSCGRG00001016634) Kcnk2 (ENSCGRG00001013573) Cenpf (ENSCGRG00001016593) Ptpn14 (ENSCGRG00001017884) Smyd2 (ENSCGRG00001013013) Prox1 (ENSCGRG00001000943) ENSCGRG00001012264 Rps6kc1 (ENSCGRG00001018952) Angel2 (ENSCGRG00001024663) Vash2 (ENSCGRG00001022829) Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 717 Dynlt3 (ENSMAUG00000015141) ENSMAUG00000008638 #7 ENSMAUG00000020752 Rpgr (ENSMAUG00000001619) #10 Otc (ENSMAUG00000009398) #11 Tspan7 (ENSMAUG00000016617) #13 Mid1ip1 (ENSMAUG00000014237) #14 ENSMAUG00000008218 #15 ENSMAUG00000008014 #15 Atp6ap2 (ENSMAUG00000021791) #16 1810030O07Rik (ENSMAUG00000018848) #19 ENSMAUG00000018384 Med14 (ENSMAUG00000011652) #20 ENSMAUG00000003759 Usp9x (ENSMAUG00000015465) #21 Ddx3x (ENSMAUG00000021962) #22 Gpr34 (ENSMAUG00000020755) #26 Gpr82 (ENSMAUG00000003517) #27 Cask (ENSMAUG00000018107) #25 ENSMAUG00000008252 Maoa (ENSMAUG00000017953) #28 Maob (ENSMAUG00000017384) #29 Ndp (ENSMAUG00000001320) #30 Efhc2 (ENSMAUG00000020354) #31 Fundc1 (ENSMAUG00000002313) #32 Dusp21 (ENSMAUG00000003084) Kdm6a (ENSMAUG00000008372) #34 Dipk2b (ENSMAUG00000016254) #35 Golden Hamster MODERN SPECIES 744 Hlx (ENSMAUG00000020373) Mtarc1 (ENSMAUG00000005520) Mtarc2 (ENSMAUG00000010919) C130074G19Rik (ENSMAUG00000014190) Mark1 (ENSMAUG00000007381) Rab3gap2 (ENSMAUG00000010814) Iars2 (ENSMAUG00000012822) Bpnt1 (ENSMAUG00000020057) Eprs (ENSMAUG00000012512) ENSMAUG00000001832 Slc30a10 (ENSMAUG00000007513) ENSMAUG00000020698 Lyplal1 (ENSMAUG00000017031) Tgfb2 (ENSMAUG00000010097) Rrp15 (ENSMAUG00000020012) D1Pas1 (ENSMAUG00000000329) #22 Spata17 (ENSMAUG00000008429) Gpatch2 (ENSMAUG00000004851) ENSMAUG00000009220 ENSMAUG00000002879 Kctd3 (ENSMAUG00000016425) Kcnk2 (ENSMAUG00000004359) Cenpf (ENSMAUG00000017524) Murinae ANCESTRAL SPECIES 33 ENSGT00940000155009 ENSGT00390000015623 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000153096.b.c.a.a.b #12 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00940000163590 #18 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00390000009776.i #36 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Rat DUPLICATION Rat MODERN SPECIES 46 Dynlt3 (ENSRNOG00000003611) Sytl5 (ENSRNOG00000003585) #7 Rpgr (ENSRNOG00000003013) #10 Otc (ENSRNOG00000003370) #11 RGD1561661 (ENSRNOG00000023094) #12 Tspan7 (ENSRNOG00000003229) #13 Mid1ip1 (ENSRNOG00000003228) #14 AABR07037073.1 (ENSRNOG00000003227) Bcor (ENSRNOG00000034240) #15 ENSRNOG00000064902 Atp6ap2 (ENSRNOG00000003858) #16 AABR07037058.1 (ENSRNOG00000023163) #18 RGD1565685 (ENSRNOG00000023187) #19 Med14 (ENSRNOG00000003792) #20 Usp9x (ENSRNOG00000003261) #21 Ddx3x (ENSRNOG00000023383) #22 Nyx (ENSRNOG00000009646) #24 Gpr34 (ENSRNOG00000039759) #26 Gpr82 (ENSRNOG00000039762) #27 Cask (ENSRNOG00000060946) #25 AABR07036974.1 (ENSRNOG00000030819) Ppp1r2-ps1 (ENSRNOG00000069720) RGD1562289 (ENSRNOG00000068449) Maoa (ENSRNOG00000002848) #28 Maob (ENSRNOG00000029778) #29 Ndp (ENSRNOG00000002960) #30 ENSRNOG00000070880 LOC103690794 (ENSRNOG00000024053) Efhc2 (ENSRNOG00000002986) #31 Fundc1 (ENSRNOG00000003470) #32 ENSRNOG00000070430 Rat MODERN SPECIES 4 LOC100912365 (ENSRNOG00000004066) Dusp10 (ENSRNOG00000004003) Hlx (ENSRNOG00000002309) Mtarc1 (ENSRNOG00000037850) RGD1310587 (ENSRNOG00000002322) Mark1 (ENSRNOG00000002339) LOC120096209 (ENSRNOG00000023547) Rab3gap2 (ENSRNOG00000002353) Iars2 (ENSRNOG00000002368) Bpnt1 (ENSRNOG00000002378) Eprs1 (ENSRNOG00000002393) Slc30a10 (ENSRNOG00000002397) Lyplal1 (ENSRNOG00000023130) Tgfb2 (ENSRNOG00000002418) Rrp15 (ENSRNOG00000002450) Ddx3y (ENSRNOG00000002501) #22 Spata17 (ENSRNOG00000002504) Gpatch2 (ENSRNOG00000002512) Esrrg (ENSRNOG00000002593) Ush2a (ENSRNOG00000003738) Kctd3 (ENSRNOG00000002627) LOC100361993 (ENSRNOG00000022144) Kcnk2 (ENSRNOG00000002653) Cenpf (ENSRNOG00000003388) Ptpn14 (ENSRNOG00000003407) Smyd2 (ENSRNOG00000003583) LOC498308 (ENSRNOG00000032812) Prox1 (ENSRNOG00000003694) Rps6kc1 (ENSRNOG00000003767) LOC678708 (ENSRNOG00000071166) Angel2 (ENSRNOG00000003795) Mus ANCESTRAL SPECIES 9 ENSGT00940000160244 ENSGT00940000155009 ENSGT00390000015623 ENSGT00950000183845 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162231 #37 ENSGT00940000153460.c.a ENSGT00940000158262 Mus_A ANCESTRAL SPECIES 15 ENSGT00940000155009 ENSGT00390000015623 ENSGT00950000183845 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000162492.g.b ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00390000016779.b.b ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000162231 #37 ENSGT00940000153460.c.a Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 19 Dynlt3 (MGP_CAROLIEiJ_G0032926) H2ap (MGP_CAROLIEiJ_G0032927) MGP_CAROLIEiJ_G0032928 Sytl5 (MGP_CAROLIEiJ_G0032929) #7 Srpx (MGP_CAROLIEiJ_G0032930) #9 Rpgr (MGP_CAROLIEiJ_G0032931) #10 Otc (MGP_CAROLIEiJ_G0032932) #11 Tspan7 (MGP_CAROLIEiJ_G0032933) #13 Mid1ip1 (MGP_CAROLIEiJ_G0032934) #14 MGP_CAROLIEiJ_G0032935 Bcor (MGP_CAROLIEiJ_G0032936) #15 Atp6ap2 (MGP_CAROLIEiJ_G0032937) #16 1810030O07Rik (MGP_CAROLIEiJ_G0032938) #19 Med14 (MGP_CAROLIEiJ_G0032939) #20 MGP_CAROLIEiJ_G0032940 Ddx3x (MGP_CAROLIEiJ_G0032941) #22 Nyx (MGP_CAROLIEiJ_G0032942) #24 Cask (MGP_CAROLIEiJ_G0032943) #25 Gpr34 (MGP_CAROLIEiJ_G0032944) #26 Gpr82 (MGP_CAROLIEiJ_G0032945) #27 MGP_CAROLIEiJ_G0032946 Cypt1 (MGP_CAROLIEiJ_G0032947) MGP_CAROLIEiJ_G0032948 Maoa (MGP_CAROLIEiJ_G0032949) #28 Maob (MGP_CAROLIEiJ_G0032950) #29 Ndp (MGP_CAROLIEiJ_G0032951) #30 Efhc2 (MGP_CAROLIEiJ_G0032952) #31 Fundc1 (MGP_CAROLIEiJ_G0032953) #32 Dusp21 (MGP_CAROLIEiJ_G0032954) Kdm6a (MGP_CAROLIEiJ_G0032955) #34 Dipk2b (MGP_CAROLIEiJ_G0032956) #35 Ryukyu mouse MODERN SPECIES Dusp10 (MGP_CAROLIEiJ_G0015013) 1700056E22Rik (MGP_CAROLIEiJ_G0015014) Hlx (MGP_CAROLIEiJ_G0015015) Mtarc1 (MGP_CAROLIEiJ_G0015016) MGP_CAROLIEiJ_G0015017 C130074G19Rik (MGP_CAROLIEiJ_G0015018) Mark1 (MGP_CAROLIEiJ_G0015019) Rab3gap2 (MGP_CAROLIEiJ_G0015020) Iars2 (MGP_CAROLIEiJ_G0015021) Bpnt1 (MGP_CAROLIEiJ_G0015022) Eprs (MGP_CAROLIEiJ_G0015023) Slc30a10 (MGP_CAROLIEiJ_G0015024) Lyplal1 (MGP_CAROLIEiJ_G0015025) Tgfb2 (MGP_CAROLIEiJ_G0015026) Rrp15 (MGP_CAROLIEiJ_G0015027) D1Pas1 (MGP_CAROLIEiJ_G0015028) #22 Spata17 (MGP_CAROLIEiJ_G0015029) Gpatch2 (MGP_CAROLIEiJ_G0015030) Esrrg (MGP_CAROLIEiJ_G0015031) MGP_CAROLIEiJ_G0015032 Kctd3 (MGP_CAROLIEiJ_G0015033) Kcnk2 (MGP_CAROLIEiJ_G0015034) Cenpf (MGP_CAROLIEiJ_G0015035) Ptpn14 (MGP_CAROLIEiJ_G0015036) Smyd2 (MGP_CAROLIEiJ_G0015037) Prox1 (MGP_CAROLIEiJ_G0015038) Rps6kc1 (MGP_CAROLIEiJ_G0015039) Angel2 (MGP_CAROLIEiJ_G0015040) Vash2 (MGP_CAROLIEiJ_G0015041) Flvcr1 (MGP_CAROLIEiJ_G0015042) Spata45 (MGP_CAROLIEiJ_G0015043) Mus_B ANCESTRAL SPECIES 14 ENSGT00940000162492.h ENSGT00940000155009 ENSGT00390000015623 ENSGT00950000183845 ENSGT00940000158618 #7 ENSGT00940000160302 #9 ENSGT00940000159616 #10 ENSGT00510000047417 #11 ENSGT00940000156153.q #13 ENSGT00500000044890.a.a #14 ENSGT00940000153737.b.o #15 ENSGT00390000008856 #16 ENSGT00390000006290 #19 ENSGT00390000001021 #20 ENSGT00940000155375.c #21 ENSGT00940000154443.b.a #22 ENSGT00940000160782 #24 ENSGT00940000155600.b #25 ENSGT01060000248589.C #26 ENSGT00990000203619.A.a #27 ENSGT00390000016779.b.b ENSGT00940000160514 #28 ENSGT00940000161545 #29 ENSGT00390000004304 #30 ENSGT00530000063528.B #31 ENSGT00940000154517 #32 ENSGT00940000163638 ENSGT00940000155202.i.b #34 ENSGT00520000055625.a #35 ENSGT00940000161768.B ENSGT00940000162231 #37 Mouse DUPLICATION Mouse MODERN SPECIES 37 H2al1a (ENSMUSG00000100626) H2al1b (ENSMUSG00000101819) H2al1c (ENSMUSG00000096097) H2al1d (ENSMUSG00000094904) H2al1e (ENSMUSG00000095413) H2al1f (ENSMUSG00000095655) H2al1g (ENSMUSG00000095662) H2al1h (ENSMUSG00000099443) H2al1i (ENSMUSG00000095445) H2al1j (ENSMUSG00000069038) Bcor (ENSMUSG00000040363) #15 Atp6ap2 (ENSMUSG00000031007) #16 1810030O07Rik (ENSMUSG00000044148) #19 Med14 (ENSMUSG00000064127) #20 Usp9x (ENSMUSG00000031010) #21 Ddx3x (ENSMUSG00000000787) #22 Nyx (ENSMUSG00000051228) #24 Cask (ENSMUSG00000031012) #25 Gpr34 (ENSMUSG00000040229) #26 Gpr82 (ENSMUSG00000047678) #27 H2al1n (ENSMUSG00000078346) Cypt1 (ENSMUSG00000023257) Maoa (ENSMUSG00000025037) #28 Maob (ENSMUSG00000040147) #29 Ndp (ENSMUSG00000040138) #30 Efhc2 (ENSMUSG00000025038) #31 Fundc1 (ENSMUSG00000025040) #32 Dusp21 (ENSMUSG00000025043) Kdm6a (ENSMUSG00000037369) #34 Dipk2b (ENSMUSG00000037358) #35 Tex13c3 (ENSMUSG00000068149) Mouse MODERN SPECIES Dusp10 (ENSMUSG00000039384) 1700056E22Rik (ENSMUSG00000044854) Hlx (ENSMUSG00000039377) Mtarc1 (ENSMUSG00000026621) Mtarc2 (ENSMUSG00000073481) C130074G19Rik (ENSMUSG00000039349) Mark1 (ENSMUSG00000026620) Rab3gap2 (ENSMUSG00000039318) Iars2 (ENSMUSG00000026618) Bpnt1 (ENSMUSG00000026617) Eprs (ENSMUSG00000026615) Slc30a10 (ENSMUSG00000026614) Lyplal1 (ENSMUSG00000039246) Tgfb2 (ENSMUSG00000039239) Rrp15 (ENSMUSG00000001305) D1Pas1 (ENSMUSG00000039224) #22 Spata17 (ENSMUSG00000026611) Gpatch2 (ENSMUSG00000039210) Esrrg (ENSMUSG00000026610) Ush2a (ENSMUSG00000026609) Kctd3 (ENSMUSG00000026608) Kcnk2 (ENSMUSG00000037624) Cenpf (ENSMUSG00000026605) Ptpn14 (ENSMUSG00000026604) Smyd2 (ENSMUSG00000026603) Prox1 (ENSMUSG00000010175) Rps6kc1 (ENSMUSG00000089872) Angel2 (ENSMUSG00000026634) Vash2 (ENSMUSG00000037568) Flvcr1 (ENSMUSG00000066595) Spata45 (ENSMUSG00000057072) Mus_C ANCESTRAL SPECIES 1 ENSGT00940000157671 ENSGT00950000183093.C ENSGT00940000162410 ENSGT00940000159665 ENSGT00390000004585 ENSGT00940000157560.e ENSGT00390000005794 ENSGT00550000074910 ENSGT00940000157359 ENSGT00550000074815 ENSGT00900000143215 ENSGT00940000159967 ENSGT00940000159171 ENSGT00940000157390 ENSGT00390000001960 ENSGT00940000154443.b.a #22 ENSGT00390000011270 ENSGT00410000025698.a ENSGT00940000153433.B.a.b ENSGT00940000158456 ENSGT00940000153881.a ENSGT00940000156560 ENSGT00730000111187.b ENSGT00940000156874 ENSGT00940000157082 ENSGT00940000154790.a.a.b ENSGT00940000155656 ENSGT00940000157391 ENSGT00390000012703.a ENSGT01030000234625.B.c ENSGT00390000018676 Steppe mouse MODERN SPECIES 1031 ENSMSIG00000001024 #22 spretus DUPLICATION spretus MODERN SPECIES 19 MGP_SPRETEiJ_G0034077 Dynlt3 (MGP_SPRETEiJ_G0034078) H2ap (MGP_SPRETEiJ_G0034079) H2al3 (MGP_SPRETEiJ_G0034080) Sytl5 (MGP_SPRETEiJ_G0034081) #7 Srpx (MGP_SPRETEiJ_G0034082) #9 Rpgr (MGP_SPRETEiJ_G0034083) #10 Otc (MGP_SPRETEiJ_G0034084) #11 Tspan7 (MGP_SPRETEiJ_G0034085) #13 Mid1ip1 (MGP_SPRETEiJ_G0034086) #14 Bcor (MGP_SPRETEiJ_G0034087) #15 Atp6ap2 (MGP_SPRETEiJ_G0034088) #16 1810030O07Rik (MGP_SPRETEiJ_G0034089) #19 Med14 (MGP_SPRETEiJ_G0034090) #20 Usp9x (MGP_SPRETEiJ_G0034091) #21 Ddx3x (MGP_SPRETEiJ_G0034092) #22 Nyx (MGP_SPRETEiJ_G0034093) #24 Cask (MGP_SPRETEiJ_G0034094) #25 Gpr34 (MGP_SPRETEiJ_G0034095) #26 Gpr82 (MGP_SPRETEiJ_G0034096) #27 MGP_SPRETEiJ_G0034097 Maoa (MGP_SPRETEiJ_G0034098) #28 Maob (MGP_SPRETEiJ_G0034099) #29 Ndp (MGP_SPRETEiJ_G0034100) #30 Efhc2 (MGP_SPRETEiJ_G0034101) #31 Fundc1 (MGP_SPRETEiJ_G0034102) #32 Dusp21 (MGP_SPRETEiJ_G0034103) Kdm6a (MGP_SPRETEiJ_G0034104) #34 Dipk2b (MGP_SPRETEiJ_G0034105) #35 Tex13c3 (MGP_SPRETEiJ_G0034106) Chst7 (MGP_SPRETEiJ_G0034107) #37 spretus MODERN SPECIES Dusp10 (MGP_SPRETEiJ_G0015813) 1700056E22Rik (MGP_SPRETEiJ_G0015814) Hlx (MGP_SPRETEiJ_G0015815) Mtarc1 (MGP_SPRETEiJ_G0015816) Mtarc2 (MGP_SPRETEiJ_G0015817) C130074G19Rik (MGP_SPRETEiJ_G0015818) Mark1 (MGP_SPRETEiJ_G0015819) Rab3gap2 (MGP_SPRETEiJ_G0015820) Iars2 (MGP_SPRETEiJ_G0015821) Bpnt1 (MGP_SPRETEiJ_G0015822) Eprs (MGP_SPRETEiJ_G0015823) Slc30a10 (MGP_SPRETEiJ_G0015824) Lyplal1 (MGP_SPRETEiJ_G0015825) Tgfb2 (MGP_SPRETEiJ_G0015826) Rrp15 (MGP_SPRETEiJ_G0015827) D1Pas1 (MGP_SPRETEiJ_G0015828) #22 Spata17 (MGP_SPRETEiJ_G0015829) Gpatch2 (MGP_SPRETEiJ_G0015830) Esrrg (MGP_SPRETEiJ_G0015831) MGP_SPRETEiJ_G0015832 Kctd3 (MGP_SPRETEiJ_G0015833) Kcnk2 (MGP_SPRETEiJ_G0015834) Cenpf (MGP_SPRETEiJ_G0015835) Ptpn14 (MGP_SPRETEiJ_G0015836) Smyd2 (MGP_SPRETEiJ_G0015837) Ighv2-7 (MGP_SPRETEiJ_G0000034) Prox1 (MGP_SPRETEiJ_G0015838) Rps6kc1 (MGP_SPRETEiJ_G0015839) Angel2 (MGP_SPRETEiJ_G0015840) Vash2 (MGP_SPRETEiJ_G0015841) Flvcr1 (MGP_SPRETEiJ_G0015842) Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 23 Cybb (MGP_PahariEiJ_G0031472) Dynlt3 (MGP_PahariEiJ_G0031473) H2ap (MGP_PahariEiJ_G0031474) MGP_PahariEiJ_G0031475 Sytl5 (MGP_PahariEiJ_G0031476) #7 Srpx (MGP_PahariEiJ_G0031477) #9 Rpgr (MGP_PahariEiJ_G0031478) #10 Otc (MGP_PahariEiJ_G0031479) #11 Tspan7 (MGP_PahariEiJ_G0031480) #13 Mid1ip1 (MGP_PahariEiJ_G0031481) #14 Bcor (MGP_PahariEiJ_G0031482) #15 Atp6ap2 (MGP_PahariEiJ_G0031483) #16 1810030O07Rik (MGP_PahariEiJ_G0031484) #19 Med14 (MGP_PahariEiJ_G0031485) #20 Usp9x (MGP_PahariEiJ_G0031486) #21 Ddx3x (MGP_PahariEiJ_G0031487) #22 Nyx (MGP_PahariEiJ_G0031488) #24 Cask (MGP_PahariEiJ_G0031489) #25 Gpr34 (MGP_PahariEiJ_G0031490) #26 Gpr82 (MGP_PahariEiJ_G0031491) #27 Maoa (MGP_PahariEiJ_G0031492) #28 Maob (MGP_PahariEiJ_G0031493) #29 Ndp (MGP_PahariEiJ_G0031494) #30 Efhc2 (MGP_PahariEiJ_G0031495) #31 Fundc1 (MGP_PahariEiJ_G0031496) #32 Dusp21 (MGP_PahariEiJ_G0031497) Kdm6a (MGP_PahariEiJ_G0031498) #34 Dipk2b (MGP_PahariEiJ_G0031499) #35 Chst7 (MGP_PahariEiJ_G0031500) #37 Slc9a7 (MGP_PahariEiJ_G0031501) Rp2 (MGP_PahariEiJ_G0031502) Shrew mouse MODERN SPECIES 18 Dusp10 (MGP_PahariEiJ_G0028245) 1700056E22Rik (MGP_PahariEiJ_G0028246) Hlx (MGP_PahariEiJ_G0028247) Mtarc1 (MGP_PahariEiJ_G0028248) Mtarc2 (MGP_PahariEiJ_G0028249) C130074G19Rik (MGP_PahariEiJ_G0028250) Mark1 (MGP_PahariEiJ_G0028251) Rab3gap2 (MGP_PahariEiJ_G0028252) Iars2 (MGP_PahariEiJ_G0028253) Bpnt1 (MGP_PahariEiJ_G0028254) Eprs (MGP_PahariEiJ_G0028255) Slc30a10 (MGP_PahariEiJ_G0028256) Lyplal1 (MGP_PahariEiJ_G0028257) Tgfb2 (MGP_PahariEiJ_G0028258) Rrp15 (MGP_PahariEiJ_G0028259) D1Pas1 (MGP_PahariEiJ_G0028260) #22 Spata17 (MGP_PahariEiJ_G0028261) Gpatch2 (MGP_PahariEiJ_G0028262) Esrrg (MGP_PahariEiJ_G0028263) Ush2a (MGP_PahariEiJ_G0028264) Kctd3 (MGP_PahariEiJ_G0028265) Kcnk2 (MGP_PahariEiJ_G0028266) Cenpf (MGP_PahariEiJ_G0028267) MGP_PahariEiJ_G0028268 MGP_PahariEiJ_G0028269 Prox1 (MGP_PahariEiJ_G0028270) Rps6kc1 (MGP_PahariEiJ_G0028271) Angel2 (MGP_PahariEiJ_G0028272) Vash2 (MGP_PahariEiJ_G0028273) Flvcr1 (MGP_PahariEiJ_G0028274) Spata45 (MGP_PahariEiJ_G0028275)