Glires	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	Dennd2c (ENSNGAG00000023499) #7	Ampd1 (ENSNGAG00000023553) #8	Nras (ENSNGAG00000007289) #9	ENSNGAG00000021929 #10	Sike1 (ENSNGAG00000016770) #11	Nr1h5 (ENSNGAG00000010800) #12	Sycp1 (ENSNGAG00000012549) #13	Tshb (ENSNGAG00000001574) #14	Tspan2 (ENSNGAG00000014905) #15	Ngf (ENSNGAG00000018398) #16	Vangl1 (ENSNGAG00000021078) #17	Casq2 (ENSNGAG00000012360) #18	Nhlh2 (ENSNGAG00000022644) #19	ENSNGAG00000017546 #20	Mab21l3 (ENSNGAG00000013724) #21	Atp1a1 (ENSNGAG00000022692) #22	Igsf3 (ENSNGAG00000024078) #23	Cd2 (ENSNGAG00000015298) #24
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Northern American deer mouse	MODERN SPECIES	19	Dennd2c (ENSPEMG00000002658) #7	Ampd1 (ENSPEMG00000017567) #8	Nras (ENSPEMG00000029639) #9	Csde1 (ENSPEMG00000020357) #10	Sike1 (ENSPEMG00000020550) #11	Nr1h5 (ENSPEMG00000021165) #12	Sycp1 (ENSPEMG00000023338) #13	Tshb (ENSPEMG00000024182) #14	Tspan2 (ENSPEMG00000023387) #15	Ngf (ENSPEMG00000001587) #16	Vangl1 (ENSPEMG00000026640) #17	Casq2 (ENSPEMG00000012959) #18	Nhlh2 (ENSPEMG00000025983) #19	Slc22a15 (ENSPEMG00000023603) #20	Mab21l3 (ENSPEMG00000023035) #21	Atp1a1 (ENSPEMG00000010999) #22	Igsf3 (ENSPEMG00000011916) #23	Cd2 (ENSPEMG00000018550) #24	Ptgfrn (ENSPEMG00000009682)	Cd101 (ENSPEMG00000008402)	ENSPEMG00000010330	ENSPEMG00000010451	Trim45 (ENSPEMG00000007787)	ENSPEMG00000027103	Man1a2 (ENSPEMG00000007670)	ENSPEMG00000031182	Gdap2 (ENSPEMG00000020913)	Wdr3 (ENSPEMG00000011928)	Spag17 (ENSPEMG00000012291)	Tbx15 (ENSPEMG00000026645)	ENSPEMG00000018152
Prairie vole	MODERN SPECIES	8	Ampd1 (ENSMOCG00000010785) #8	Nras (ENSMOCG00000022441) #9	Csde1 (ENSMOCG00000018960) #10	ENSMOCG00000009367	Sike1 (ENSMOCG00000000516) #11	Nr1h5 (ENSMOCG00000012316) #12	Sycp1 (ENSMOCG00000009622) #13	Tshb (ENSMOCG00000006126) #14	Tspan2 (ENSMOCG00000003591) #15	Ngf (ENSMOCG00000021179) #16	Vangl1 (ENSMOCG00000018281) #17	Casq2 (ENSMOCG00000014851) #18	Nhlh2 (ENSMOCG00000007572) #19	ENSMOCG00000020465 #20	Mab21l3 (ENSMOCG00000016617) #21	Atp1a1 (ENSMOCG00000006963) #22	Igsf3 (ENSMOCG00000005813) #23	Ptgfrn (ENSMOCG00000020768)	Ttf2 (ENSMOCG00000008415)	Trim45 (ENSMOCG00000000422)	Vtcn1 (ENSMOCG00000000748)	Man1a2 (ENSMOCG00000020901)	Tent5c (ENSMOCG00000018840)	Gdap2 (ENSMOCG00000011700)	Wdr3 (ENSMOCG00000014361)	Spag17 (ENSMOCG00000001590)	ENSMOCG00000009935	Tbx15 (ENSMOCG00000012596)	Wars2 (ENSMOCG00000005144)	ENSMOCG00000020989	ENSMOCG00000020634
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000165376	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Chinese hamster chok1gshd	MODERN SPECIES	66	Nras (ENSCGRG00001020093) #9	ENSCGRG00001016833 #10	ENSCGRG00001011859	Sike1 (ENSCGRG00001023509) #11	Nr1h5 (ENSCGRG00001022882) #12	Sycp1 (ENSCGRG00001010102) #13	ENSCGRG00001006375	Tshb (ENSCGRG00001012202) #14	Tspan2 (ENSCGRG00001014655) #15	Ngf (ENSCGRG00001000250) #16	Vangl1 (ENSCGRG00001022127) #17	Casq2 (ENSCGRG00001013746) #18	Nhlh2 (ENSCGRG00001009328) #19	Slc22a15 (ENSCGRG00001018525) #20	Mab21l3 (ENSCGRG00001018373) #21	Atp1a1 (ENSCGRG00001024330) #22	Igsf3 (ENSCGRG00001017829) #23	Cd2 (ENSCGRG00001019348) #24	Ptgfrn (ENSCGRG00001022148)	Cd101 (ENSCGRG00001024359)	ENSCGRG00001006277	Trim45 (ENSCGRG00001000157)	Vtcn1 (ENSCGRG00001015357)	Man1a2 (ENSCGRG00001020266)	Tent5c (ENSCGRG00001005586)	Gdap2 (ENSCGRG00001012369)	Wdr3 (ENSCGRG00001019544)	Spag17 (ENSCGRG00001013560)	Tbx15 (ENSCGRG00001024224)	Wars2 (ENSCGRG00001018718)	Hao2 (ENSCGRG00001020203)
Golden Hamster	MODERN SPECIES	681	Ampd1 (ENSMAUG00000001096) #8	Nras (ENSMAUG00000019927) #9	Csde1 (ENSMAUG00000014031) #10	Sike1 (ENSMAUG00000012482) #11	Nr1h5 (ENSMAUG00000010803) #12	Sycp1 (ENSMAUG00000000328) #13	Tshb (ENSMAUG00000005156) #14	Tspan2 (ENSMAUG00000004539) #15	ENSMAUG00000002276 #16	Vangl1 (ENSMAUG00000009480) #17	Casq2 (ENSMAUG00000000284) #18	Nhlh2 (ENSMAUG00000016936) #19	Slc22a15 (ENSMAUG00000010758) #20	Mab21l3 (ENSMAUG00000009568) #21	ENSMAUG00000008452	Atp1a1 (ENSMAUG00000017136) #22	ENSMAUG00000017849	Igsf3 (ENSMAUG00000013987) #23	Cd2 (ENSMAUG00000012774) #24	Ptgfrn (ENSMAUG00000002851)	Cd101 (ENSMAUG00000017674)	ENSMAUG00000016725	Trim45 (ENSMAUG00000013623)	Vtcn1 (ENSMAUG00000015061)	Man1a2 (ENSMAUG00000000417)	Tent5c (ENSMAUG00000017728)	ENSMAUG00000017297	Gdap2 (ENSMAUG00000014132)	Wdr3 (ENSMAUG00000002574)	Spag17 (ENSMAUG00000008022)
Murinae	ANCESTRAL SPECIES	5	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus	ANCESTRAL SPECIES	7	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mouse	MODERN SPECIES	12	Dennd2c (ENSMUSG00000007379) #7	Ampd1 (ENSMUSG00000070385) #8	Nras (ENSMUSG00000027852) #9	Csde1 (ENSMUSG00000068823) #10	Sike1 (ENSMUSG00000027854) #11	Nr1h5 (ENSMUSG00000048938) #12	Sycp1 (ENSMUSG00000027855) #13	Tshb (ENSMUSG00000027857) #14	Tspan2 (ENSMUSG00000027858) #15	Ngf (ENSMUSG00000027859) #16	Vangl1 (ENSMUSG00000027860) #17	Casq2 (ENSMUSG00000027861) #18	Nhlh2 (ENSMUSG00000048540) #19	Slc22a15 (ENSMUSG00000033147) #20	Mab21l3 (ENSMUSG00000044313) #21	Atp1a1 (ENSMUSG00000033161) #22	Igsf3 (ENSMUSG00000042035) #23	Cd2 (ENSMUSG00000027863) #24	Ptgfrn (ENSMUSG00000027864)	Cd101 (ENSMUSG00000086564)	Ttf2 (ENSMUSG00000033222)	Trim45 (ENSMUSG00000033233)	Vtcn1 (ENSMUSG00000051076)	Man1a2 (ENSMUSG00000008763)	Tent5c (ENSMUSG00000044468)	Gdap2 (ENSMUSG00000027865)	Wdr3 (ENSMUSG00000033285)	Spag17 (ENSMUSG00000027867)	Tbx15 (ENSMUSG00000027868)	Wars2 (ENSMUSG00000004233)	Hao2 (ENSMUSG00000027870)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
spretus	MODERN SPECIES	12	Dennd2c (MGP_SPRETEiJ_G0026397) #7	Ampd1 (MGP_SPRETEiJ_G0026396) #8	Nras (MGP_SPRETEiJ_G0026395) #9	Csde1 (MGP_SPRETEiJ_G0026394) #10	Sike1 (MGP_SPRETEiJ_G0026393) #11	Nr1h5 (MGP_SPRETEiJ_G0026392) #12	Sycp1 (MGP_SPRETEiJ_G0026391) #13	Tshb (MGP_SPRETEiJ_G0026390) #14	Tspan2 (MGP_SPRETEiJ_G0026389) #15	Ngf (MGP_SPRETEiJ_G0026388) #16	Vangl1 (MGP_SPRETEiJ_G0026387) #17	Casq2 (MGP_SPRETEiJ_G0026386) #18	Nhlh2 (MGP_SPRETEiJ_G0026385) #19	Slc22a15 (MGP_SPRETEiJ_G0026384) #20	Mab21l3 (MGP_SPRETEiJ_G0026383) #21	Atp1a1 (MGP_SPRETEiJ_G0026382) #22	Igsf3 (MGP_SPRETEiJ_G0026381) #23	Cd2 (MGP_SPRETEiJ_G0026380) #24	Ptgfrn (MGP_SPRETEiJ_G0026379)	Cd101 (MGP_SPRETEiJ_G0026378)	Ttf2 (MGP_SPRETEiJ_G0026377)	Trim45 (MGP_SPRETEiJ_G0026376)	Vtcn1 (MGP_SPRETEiJ_G0026375)	Man1a2 (MGP_SPRETEiJ_G0026374)	Tent5c (MGP_SPRETEiJ_G0026373)	Gdap2 (MGP_SPRETEiJ_G0026372)	Wdr3 (MGP_SPRETEiJ_G0026371)	Spag17 (MGP_SPRETEiJ_G0026370)	Tbx15 (MGP_SPRETEiJ_G0026369)	Wars2 (MGP_SPRETEiJ_G0026368)	Hao2 (MGP_SPRETEiJ_G0026367)
Steppe mouse	MODERN SPECIES	3036										Casq2 (ENSMSIG00000017951) #18	ENSMSIG00000017944	Nhlh2 (ENSMSIG00000017937) #19	Slc22a15 (ENSMSIG00000017867) #20	Mab21l3 (ENSMSIG00000017843) #21	ENSMSIG00000017831	Atp1a1 (ENSMSIG00000017781) #22	Igsf3 (ENSMSIG00000017718) #23	Cd2 (ENSMSIG00000017692) #24	Ptgfrn (ENSMSIG00000017639)	Cd101 (ENSMSIG00000017562)	Ttf2 (ENSMSIG00000017516)	ENSMSIG00000017406	Vtcn1 (ENSMSIG00000017388)	Man1a2 (ENSMSIG00000017361)	Tent5c (ENSMSIG00000017352)
Ryukyu mouse	MODERN SPECIES	12	Dennd2c (MGP_CAROLIEiJ_G0025447) #7	Ampd1 (MGP_CAROLIEiJ_G0025446) #8	Nras (MGP_CAROLIEiJ_G0025445) #9	Csde1 (MGP_CAROLIEiJ_G0025444) #10	Sike1 (MGP_CAROLIEiJ_G0025443) #11	Nr1h5 (MGP_CAROLIEiJ_G0025442) #12	MGP_CAROLIEiJ_G0025441 ##13	Tshb (MGP_CAROLIEiJ_G0025440) #14	Tspan2 (MGP_CAROLIEiJ_G0025439) #15	Ngf (MGP_CAROLIEiJ_G0025438) #16	Vangl1 (MGP_CAROLIEiJ_G0025437) #17	Casq2 (MGP_CAROLIEiJ_G0025436) #18	Nhlh2 (MGP_CAROLIEiJ_G0025435) #19	Slc22a15 (MGP_CAROLIEiJ_G0025434) #20	Mab21l3 (MGP_CAROLIEiJ_G0025433) #21	Atp1a1 (MGP_CAROLIEiJ_G0025432) #22	Igsf3 (MGP_CAROLIEiJ_G0025431) #23	Cd2 (MGP_CAROLIEiJ_G0025430) #24	Ptgfrn (MGP_CAROLIEiJ_G0025429)	Cd101 (MGP_CAROLIEiJ_G0025428)	Ttf2 (MGP_CAROLIEiJ_G0025427)	MGP_CAROLIEiJ_G0025426	Vtcn1 (MGP_CAROLIEiJ_G0025425)	Man1a2 (MGP_CAROLIEiJ_G0025424)	Tent5c (MGP_CAROLIEiJ_G0025423)	Gdap2 (MGP_CAROLIEiJ_G0025422)	Wdr3 (MGP_CAROLIEiJ_G0025421)	Spag17 (MGP_CAROLIEiJ_G0025420)	Tbx15 (MGP_CAROLIEiJ_G0025419)	MGP_CAROLIEiJ_G0025418	Hao2 (MGP_CAROLIEiJ_G0025417)
Shrew mouse	MODERN SPECIES	17	Dennd2c (MGP_PahariEiJ_G0026891) #7	Ampd1 (MGP_PahariEiJ_G0026890) #8	Nras (MGP_PahariEiJ_G0026889) #9	Csde1 (MGP_PahariEiJ_G0026888) #10	Sike1 (MGP_PahariEiJ_G0026887) #11	Nr1h5 (MGP_PahariEiJ_G0026886) #12	Sycp1 (MGP_PahariEiJ_G0026885) #13	Tshb (MGP_PahariEiJ_G0026884) #14	Tspan2 (MGP_PahariEiJ_G0026883) #15	Ngf (MGP_PahariEiJ_G0026882) #16	Vangl1 (MGP_PahariEiJ_G0026881) #17	Casq2 (MGP_PahariEiJ_G0026880) #18	Nhlh2 (MGP_PahariEiJ_G0026879) #19	Slc22a15 (MGP_PahariEiJ_G0026878) #20	Mab21l3 (MGP_PahariEiJ_G0026877) #21	Atp1a1 (MGP_PahariEiJ_G0026876) #22	Igsf3 (MGP_PahariEiJ_G0026875) #23	Cd2 (MGP_PahariEiJ_G0026874) #24	Ptgfrn (MGP_PahariEiJ_G0026873)	Cd101 (MGP_PahariEiJ_G0026872)	Ttf2 (MGP_PahariEiJ_G0026871)	MGP_PahariEiJ_G0026870	Vtcn1 (MGP_PahariEiJ_G0026869)	Man1a2 (MGP_PahariEiJ_G0026868)	Tent5c (MGP_PahariEiJ_G0026867)	Gdap2 (MGP_PahariEiJ_G0026866)	Wdr3 (MGP_PahariEiJ_G0026865)	Spag17 (MGP_PahariEiJ_G0026864)	Tbx15 (MGP_PahariEiJ_G0026863)	Wars2 (MGP_PahariEiJ_G0026862)	Hao2 (MGP_PahariEiJ_G0026861)
Rat	MODERN SPECIES	11	Dennd2c (ENSRNOG00000018716) #7	Ampd1 (ENSRNOG00000018656) #8	Nras (ENSRNOG00000023079) #9	Csde1 (ENSRNOG00000061058) #10	Sike1 (ENSRNOG00000017502) #11	Nr1h5 (ENSRNOG00000023073) #12	Sycp1 (ENSRNOG00000016835) #13	Tshb (ENSRNOG00000016793) #14	Tspan2 (ENSRNOG00000023338) #15	Ngf (ENSRNOG00000016571) #16	Vangl1 (ENSRNOG00000016477) #17	Casq2 (ENSRNOG00000016243) #18	Nhlh2 (ENSRNOG00000054375) #19	Slc22a15 (ENSRNOG00000033051) #20	Mab21l3 (ENSRNOG00000016044) #21	Atp1a1 (ENSRNOG00000030019) #22	Igsf3 (ENSRNOG00000023851) #23	Cd2 (ENSRNOG00000015821) #24	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655)	Cd101 (ENSRNOG00000037190)	Ttf2 (ENSRNOG00000057761)	Trim45 (ENSRNOG00000015347)	Vtcn1 (ENSRNOG00000015279)	ENSRNOG00000067753	Man1a2 (ENSRNOG00000015226)	Tent5c (ENSRNOG00000070242)	Gdap2 (ENSRNOG00000019754)	Wdr3 (ENSRNOG00000019670)	Spag17 (ENSRNOG00000037196)	Tbx15 (ENSRNOG00000019565)
Lesser Egyptian jerboa	MODERN SPECIES	144	Ampd1 (ENSJJAG00000021675) #8	ENSJJAG00000020941 #9	Csde1 (ENSJJAG00000019571) #10	ENSJJAG00000019089 #11	Nr1h5 (ENSJJAG00000018578) #12	ENSJJAG00000018067 #13	Tshb (ENSJJAG00000001329) #14	Tspan2 (ENSJJAG00000000832) #15	Ngf (ENSJJAG00000022901) #16	ENSJJAG00000021722	Vangl1 (ENSJJAG00000021462) #17	Casq2 (ENSJJAG00000020862) #18	Nhlh2 (ENSJJAG00000019983) #19	Slc22a15 (ENSJJAG00000000255) #20	Mab21l3 (ENSJJAG00000022482) #21	Atp1a1 (ENSJJAG00000020791) #22	Igsf3 (ENSJJAG00000017489) #23	Cd2 (ENSJJAG00000019842) #24	Ptgfrn (ENSJJAG00000019616)	Ttf2 (ENSJJAG00000015225)	Trim45 (ENSJJAG00000007227)	Vtcn1 (ENSJJAG00000019207)	ENSJJAG00000018170	Man1a2 (ENSJJAG00000017865)	Tent5c (ENSJJAG00000013174)	ENSJJAG00000017333	ENSJJAG00000014767	ENSJJAG00000013768	ENSJJAG00000013505	Wdr3 (ENSJJAG00000013861)	Spag17 (ENSJJAG00000008428)
Kangaroo rat	MODERN SPECIES	397	Bcas2 (ENSDORG00000014220)	Dennd2c (ENSDORG00000014222) #7	Ampd1 (ENSDORG00000005377) #8	Nras (ENSDORG00000025267) #9	Csde1 (ENSDORG00000011609) #10	Sike1 (ENSDORG00000005162) #11	ENSDORG00000027896 #13	Tshb (ENSDORG00000003238) #14	Tspan2 (ENSDORG00000003239) #15	Ngf (ENSDORG00000025001) #16	Vangl1 (ENSDORG00000013118) #17	Casq2 (ENSDORG00000013122) #18	ENSDORG00000010026 #20	ENSDORG00000028402 #20	Mab21l3 (ENSDORG00000010259) #21	Atp1a1 (ENSDORG00000028959) #22	Igsf3 (ENSDORG00000010085) #23	Ptgfrn (ENSDORG00000013777)	Cd101 (ENSDORG00000013779)	Ttf2 (ENSDORG00000013781)	Vtcn1 (ENSDORG00000013786)	Man1a2 (ENSDORG00000025695)	Tent5c (ENSDORG00000010159)	Gdap2 (ENSDORG00000001079)	Wdr3 (ENSDORG00000011031)	Spag17 (ENSDORG00000011032)	ENSDORG00000023254	Tbx15 (ENSDORG00000005620)	Wars2 (ENSDORG00000008562)	Hao2 (ENSDORG00000003236)	ENSDORG00000007977
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini	ANCESTRAL SPECIES	62	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Squirrel	MODERN SPECIES	227		AMPD1 (ENSSTOG00000015082) #8	NRAS (ENSSTOG00000023151) #9	ENSSTOG00000032722 #10	SIKE1 (ENSSTOG00000001684) #11	ENSSTOG00000027072 #12	ENSSTOG00000010304 #13	TSHB (ENSSTOG00000022113) #14	TSPAN2 (ENSSTOG00000020353) #15	NGF (ENSSTOG00000005518) #16	VANGL1 (ENSSTOG00000015734) #17	CASQ2 (ENSSTOG00000015738) #18	NHLH2 (ENSSTOG00000019698) #19	SLC22A15 (ENSSTOG00000016141) #20	MAB21L3 (ENSSTOG00000026516) #21	ATP1A1 (ENSSTOG00000016127) #22	IGSF3 (ENSSTOG00000022906) #23	CD2 (ENSSTOG00000004188) #24	PTGFRN (ENSSTOG00000010916)	CD101 (ENSSTOG00000010919)	TTF2 (ENSSTOG00000010927)	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369)	VTCN1 (ENSSTOG00000007389)	MAN1A2 (ENSSTOG00000016016)	TENT5C (ENSSTOG00000010392)	GDAP2 (ENSSTOG00000024699)	WDR3 (ENSSTOG00000003504)	SPAG17 (ENSSTOG00000003532)	TBX15 (ENSSTOG00000013040)	WARS2 (ENSSTOG00000013051)
Arctic ground squirrel	MODERN SPECIES	134	DENND2C (ENSUPAG00010022334) #7	AMPD1 (ENSUPAG00010022337) #8	NRAS (ENSUPAG00010022339) #9	CSDE1 (ENSUPAG00010022340) #10	SIKE1 (ENSUPAG00010022488) #11	ENSUPAG00010022495 #12	SYCP1 (ENSUPAG00010022501) #13	TSHB (ENSUPAG00010022509) #14	TSPAN2 (ENSUPAG00010022515) #15	NGF (ENSUPAG00010022522) #16	VANGL1 (ENSUPAG00010022525) #17	CASQ2 (ENSUPAG00010022531) #18	NHLH2 (ENSUPAG00010022533) #19	SLC22A15 (ENSUPAG00010022536) #20	MAB21L3 (ENSUPAG00010022542) #21	ATP1A1 (ENSUPAG00010022544) #22
Alpin marmot	MODERN SPECIES	79	NRAS (ENSMMMG00000014434) #9	CSDE1 (ENSMMMG00000014448) #10	SIKE1 (ENSMMMG00000014866) #11	ENSMMMG00000014870	ENSMMMG00000014879 #12	SYCP1 (ENSMMMG00000014892) #13	ENSMMMG00000014952	TSHB (ENSMMMG00000014957) #14	TSPAN2 (ENSMMMG00000014968) #15	NGF (ENSMMMG00000014973) #16	VANGL1 (ENSMMMG00000014977) #17	CASQ2 (ENSMMMG00000014991) #18	NHLH2 (ENSMMMG00000015011) #19	SLC22A15 (ENSMMMG00000015020) #20	MAB21L3 (ENSMMMG00000015051) #21	ATP1A1 (ENSMMMG00000015066) #22	IGSF3 (ENSMMMG00000015107) #23	CD2 (ENSMMMG00000015127) #24	PTGFRN (ENSMMMG00000015141)	CD101 (ENSMMMG00000015154)	TTF2 (ENSMMMG00000015196)	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213)	VTCN1 (ENSMMMG00000015255)	MAN1A2 (ENSMMMG00000015283)	TENT5C (ENSMMMG00000015304)	GDAP2 (ENSMMMG00000015308)	WDR3 (ENSMMMG00000015336)	ENSMMMG00000015354	TBX15 (ENSMMMG00000015373)	WARS2 (ENSMMMG00000015379)
Eurasian red squirrel	MODERN SPECIES		AMPD1 (ENSSVLG00005000465) #8	ENSSVLG00005000492 #9	CSDE1 (ENSSVLG00005000559) #10	SIKE1 (ENSSVLG00005000707) #11	ENSSVLG00005000743 #12	SYCP1 (ENSSVLG00005000819) #13	TSHB (ENSSVLG00005000935) #14	TSPAN2 (ENSSVLG00005000967) #15	NGF (ENSSVLG00005001008) #16	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032) #17	CASQ2 (ENSSVLG00005001056) #18	NHLH2 (ENSSVLG00005001085) #19	SLC22A15 (ENSSVLG00005001098) #20	MAB21L3 (ENSSVLG00005001135) #21	ATP1A1 (ENSSVLG00005001182) #22	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236) #23	CD2 (ENSSVLG00005001265) #24	PTGFRN (ENSSVLG00005001283)	CD101 (ENSSVLG00005001302)	ENSSVLG00005001327	ENSSVLG00005001350	TRIM45 (ENSSVLG00005001388)	VTCN1 (ENSSVLG00005001433)	MAN1A2 (ENSSVLG00005001469)	TENT5C (ENSSVLG00005001495)	GDAP2 (ENSSVLG00005001518)	ENSSVLG00005001561	WDR3 (ENSSVLG00005001572)	ENSSVLG00005001591
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Naked mole-rat female	MODERN SPECIES	10	CSDE1 (ENSHGLG00000009620) #10	SIKE1 (ENSHGLG00000015408) #11	ENSHGLG00000032648	ENSHGLG00000004974 #12	ENSHGLG00000047308	ENSHGLG00000006103 #13	TSHB (ENSHGLG00000014600) #14	TSPAN2 (ENSHGLG00000010786) #15	NGF (ENSHGLG00000044577) #16	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399) #17	CASQ2 (ENSHGLG00000038257) #18	NHLH2 (ENSHGLG00000046588) #19	SLC22A15 (ENSHGLG00000011061) #20	MAB21L3 (ENSHGLG00000009205) #21	ATP1A1 (ENSHGLG00000009304) #22	IGSF3 (ENSHGLG00000018539) #23	CD2 (ENSHGLG00000014947) #24	PTGFRN (ENSHGLG00000019106)	CD101 (ENSHGLG00000018298)	TTF2 (ENSHGLG00000012459)	TRIM45 (ENSHGLG00000017735)	VTCN1 (ENSHGLG00000018792)	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646)	FAM46C (ENSHGLG00000043157)	ENSHGLG00000041120	ENSHGLG00000017537	WDR3 (ENSHGLG00000017936)	SPAG17 (ENSHGLG00000009162)	ENSHGLG00000032534
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000164746	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Guinea pig	MODERN SPECIES	2	DENND2C (ENSCPOG00000012944) #7	AMPD1 (ENSCPOG00000002591) #8	NRAS (ENSCPOG00000021833) #9	CSDE1 (ENSCPOG00000040388) #10	SIKE1 (ENSCPOG00000007406) #11	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690) #13	TSHB (ENSCPOG00000030694) #14	TSPAN2 (ENSCPOG00000008376) #15	NGF (ENSCPOG00000024033) #16	VANGL1 (ENSCPOG00000001701) #17	CASQ2 (ENSCPOG00000001703) #18	NHLH2 (ENSCPOG00000026593) #19	SLC22A15 (ENSCPOG00000009506) #20	MAB21L3 (ENSCPOG00000009511) #21	ATP1A1 (ENSCPOG00000000927) #22	IGSF3 (ENSCPOG00000002029) #23	CD2 (ENSCPOG00000036418) #24	PTGFRN (ENSCPOG00000015740)	CD101 (ENSCPOG00000015741)	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001)	MAN1A2 (ENSCPOG00000004935)	TENT5C (ENSCPOG00000035573)	GDAP2 (ENSCPOG00000012599)	WDR3 (ENSCPOG00000011305)	SPAG17 (ENSCPOG00000011317)	TBX15 (ENSCPOG00000000615)	WARS2 (ENSCPOG00000000616)	ENSCPOG00000001451	ENSCPOG00000033437
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.d #13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000167338	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Long-tailed chinchilla	MODERN SPECIES	142	AMPD1 (ENSCLAG00000006645) #8	NRAS (ENSCLAG00000005888) #9	CSDE1 (ENSCLAG00000006618) #10	SIKE1 (ENSCLAG00000005344) #11	ENSCLAG00000006997	ENSCLAG00000013132 #12	ENSCLAG00000004900 ##13	TSHB (ENSCLAG00000011105) #14	TSPAN2 (ENSCLAG00000007865) #15	NGF (ENSCLAG00000004815) #16	VANGL1 (ENSCLAG00000006270) #17	CASQ2 (ENSCLAG00000007972) #18	NHLH2 (ENSCLAG00000005691) #19	SLC22A15 (ENSCLAG00000006619) #20	MAB21L3 (ENSCLAG00000004428) #21	ATP1A1 (ENSCLAG00000005733) #22	IGSF3 (ENSCLAG00000006923) #23	CD2 (ENSCLAG00000007838) #24	PTGFRN (ENSCLAG00000008229)	CD101 (ENSCLAG00000010019)	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898)	VTCN1 (ENSCLAG00000014982)	MAN1A2 (ENSCLAG00000008573)	TENT5C (ENSCLAG00000006985)	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843)	WDR3 (ENSCLAG00000010657)	SPAG17 (ENSCLAG00000006388)	TBX15 (ENSCLAG00000008292)	WARS2 (ENSCLAG00000004926)
Degu	MODERN SPECIES	181	ENSODEG00000007383 #10	SIKE1 (ENSODEG00000007343) #11	ENSODEG00000010107 #12	SYCP1 (ENSODEG00000006927) #13	TSHB (ENSODEG00000009005) #14	TSPAN2 (ENSODEG00000007319) #15	NGF (ENSODEG00000006538) #16	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599) #17	CASQ2 (ENSODEG00000009014) #18	NHLH2 (ENSODEG00000008157) #19	SLC22A15 (ENSODEG00000007565) #20	MAB21L3 (ENSODEG00000005924) #21	ATP1A1 (ENSODEG00000006810) #22	ENSODEG00000006132	IGSF3 (ENSODEG00000007439) #23	ENSODEG00000006855	PTGFRN (ENSODEG00000006807)	CD101 (ENSODEG00000006286)	ENSODEG00000006362	TRIM45 (ENSODEG00000007020)	VTCN1 (ENSODEG00000006757)	MAN1A2 (ENSODEG00000005674)	TENT5C (ENSODEG00000006187)	ENSODEG00000005813
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182931.B.a.b #7	ENSGT00950000183011.c.a.a #8	ENSGT00940000158947 #9	ENSGT00390000016950 #10	ENSGT00390000018003.a #11	ENSGT00940000163318 #12	ENSGT00390000003368.c.b ##13	ENSGT00940000158152 #14	ENSGT00940000157504 #15	ENSGT00390000007725.A.b #16	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367	ENSGT00940000161722	ENSGT00940000162718	ENSGT00940000154334.k	ENSGT00940000157300	ENSGT00940000157498	ENSGT00940000158856	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rabbit	MODERN SPECIES	4	DENND2C (ENSOCUG00000016789) #7	AMPD1 (ENSOCUG00000016424) #8	NRAS (ENSOCUG00000022455) #9	CSDE1 (ENSOCUG00000016438) #10	SIKE1 (ENSOCUG00000016457) #11	ENSOCUG00000023188 #12	ENSOCUG00000022499	ENSOCUG00000016463 ##13	Tshb (ENSOCUG00000023876) #14	TSPAN2 (ENSOCUG00000001279) #15	NGF (ENSOCUG00000000659) #16	VANGL1 (ENSOCUG00000016240) #17	CASQ2 (ENSOCUG00000010594) #18	SLC22A15 (ENSOCUG00000015370) #20	MAB21L3 (ENSOCUG00000015382) #21	ATP1A1 (ENSOCUG00000001324) #22	IGSF3 (ENSOCUG00000005284) #23	CD2 (ENSOCUG00000008474) #24	PTGFRN (ENSOCUG00000000608)	CD101 (ENSOCUG00000000612)	TTF2 (ENSOCUG00000000613)	TRIM45 (ENSOCUG00000000237)	VTCN1 (ENSOCUG00000026343)	MAN1A2 (ENSOCUG00000012648)	ENSOCUG00000026654	ENSOCUG00000027717	GDAP2 (ENSOCUG00000007568)	WDR3 (ENSOCUG00000007572)	SPAG17 (ENSOCUG00000007586)	TBX15 (ENSOCUG00000012320)	WARS2 (ENSOCUG00000012330)
Pika	MODERN SPECIES	2757																ENSOPRG00000006712 #22	ENSOPRG00000006746	ENSOPRG00000006754 #23	ENSOPRG00000006760	ENSOPRG00000006767 #24