Mus	ANCESTRAL SPECIES	7	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Steppe mouse	MODERN SPECIES	3036										Casq2 (ENSMSIG00000017951) #16	ENSMSIG00000017944 #17	Nhlh2 (ENSMSIG00000017937) #18	Slc22a15 (ENSMSIG00000017867) #19	Mab21l3 (ENSMSIG00000017843) #20	ENSMSIG00000017831 #21	Atp1a1 (ENSMSIG00000017781) #22	Igsf3 (ENSMSIG00000017718) #23	Cd2 (ENSMSIG00000017692) #24	Ptgfrn (ENSMSIG00000017639) #25	Cd101 (ENSMSIG00000017562) #26	Ttf2 (ENSMSIG00000017516) #27	ENSMSIG00000017406 #28	Vtcn1 (ENSMSIG00000017388) #29	Man1a2 (ENSMSIG00000017361) #30	Tent5c (ENSMSIG00000017352) #31
spretus	MODERN SPECIES	12	Dennd2c (MGP_SPRETEiJ_G0026397)	Ampd1 (MGP_SPRETEiJ_G0026396)	Nras (MGP_SPRETEiJ_G0026395)	Csde1 (MGP_SPRETEiJ_G0026394)	Sike1 (MGP_SPRETEiJ_G0026393)	Nr1h5 (MGP_SPRETEiJ_G0026392)	Sycp1 (MGP_SPRETEiJ_G0026391)	Tshb (MGP_SPRETEiJ_G0026390)	Tspan2 (MGP_SPRETEiJ_G0026389)	Ngf (MGP_SPRETEiJ_G0026388)	Vangl1 (MGP_SPRETEiJ_G0026387)	Casq2 (MGP_SPRETEiJ_G0026386) #16	Nhlh2 (MGP_SPRETEiJ_G0026385) #18	Slc22a15 (MGP_SPRETEiJ_G0026384) #19	Mab21l3 (MGP_SPRETEiJ_G0026383) #20	Atp1a1 (MGP_SPRETEiJ_G0026382) #22	Igsf3 (MGP_SPRETEiJ_G0026381) #23	Cd2 (MGP_SPRETEiJ_G0026380) #24	Ptgfrn (MGP_SPRETEiJ_G0026379) #25	Cd101 (MGP_SPRETEiJ_G0026378) #26	Ttf2 (MGP_SPRETEiJ_G0026377) #27	Trim45 (MGP_SPRETEiJ_G0026376) #28	Vtcn1 (MGP_SPRETEiJ_G0026375) #29	Man1a2 (MGP_SPRETEiJ_G0026374) #30	Tent5c (MGP_SPRETEiJ_G0026373) #31	Gdap2 (MGP_SPRETEiJ_G0026372)	Wdr3 (MGP_SPRETEiJ_G0026371)	Spag17 (MGP_SPRETEiJ_G0026370)	Tbx15 (MGP_SPRETEiJ_G0026369)	Wars2 (MGP_SPRETEiJ_G0026368)	Hao2 (MGP_SPRETEiJ_G0026367)
Mouse	MODERN SPECIES	12	Dennd2c (ENSMUSG00000007379)	Ampd1 (ENSMUSG00000070385)	Nras (ENSMUSG00000027852)	Csde1 (ENSMUSG00000068823)	Sike1 (ENSMUSG00000027854)	Nr1h5 (ENSMUSG00000048938)	Sycp1 (ENSMUSG00000027855)	Tshb (ENSMUSG00000027857)	Tspan2 (ENSMUSG00000027858)	Ngf (ENSMUSG00000027859)	Vangl1 (ENSMUSG00000027860)	Casq2 (ENSMUSG00000027861) #16	Nhlh2 (ENSMUSG00000048540) #18	Slc22a15 (ENSMUSG00000033147) #19	Mab21l3 (ENSMUSG00000044313) #20	Atp1a1 (ENSMUSG00000033161) #22	Igsf3 (ENSMUSG00000042035) #23	Cd2 (ENSMUSG00000027863) #24	Ptgfrn (ENSMUSG00000027864) #25	Cd101 (ENSMUSG00000086564) #26	Ttf2 (ENSMUSG00000033222) #27	Trim45 (ENSMUSG00000033233) #28	Vtcn1 (ENSMUSG00000051076) #29	Man1a2 (ENSMUSG00000008763) #30	Tent5c (ENSMUSG00000044468) #31	Gdap2 (ENSMUSG00000027865)	Wdr3 (ENSMUSG00000033285)	Spag17 (ENSMUSG00000027867)	Tbx15 (ENSMUSG00000027868)	Wars2 (ENSMUSG00000004233)	Hao2 (ENSMUSG00000027870)
Ryukyu mouse	MODERN SPECIES	12	Dennd2c (MGP_CAROLIEiJ_G0025447)	Ampd1 (MGP_CAROLIEiJ_G0025446)	Nras (MGP_CAROLIEiJ_G0025445)	Csde1 (MGP_CAROLIEiJ_G0025444)	Sike1 (MGP_CAROLIEiJ_G0025443)	Nr1h5 (MGP_CAROLIEiJ_G0025442)	MGP_CAROLIEiJ_G0025441	Tshb (MGP_CAROLIEiJ_G0025440)	Tspan2 (MGP_CAROLIEiJ_G0025439)	Ngf (MGP_CAROLIEiJ_G0025438)	Vangl1 (MGP_CAROLIEiJ_G0025437)	Casq2 (MGP_CAROLIEiJ_G0025436) #16	Nhlh2 (MGP_CAROLIEiJ_G0025435) #18	Slc22a15 (MGP_CAROLIEiJ_G0025434) #19	Mab21l3 (MGP_CAROLIEiJ_G0025433) #20	Atp1a1 (MGP_CAROLIEiJ_G0025432) #22	Igsf3 (MGP_CAROLIEiJ_G0025431) #23	Cd2 (MGP_CAROLIEiJ_G0025430) #24	Ptgfrn (MGP_CAROLIEiJ_G0025429) #25	Cd101 (MGP_CAROLIEiJ_G0025428) #26	Ttf2 (MGP_CAROLIEiJ_G0025427) #27	MGP_CAROLIEiJ_G0025426 #28	Vtcn1 (MGP_CAROLIEiJ_G0025425) #29	Man1a2 (MGP_CAROLIEiJ_G0025424) #30	Tent5c (MGP_CAROLIEiJ_G0025423) #31	Gdap2 (MGP_CAROLIEiJ_G0025422)	Wdr3 (MGP_CAROLIEiJ_G0025421)	Spag17 (MGP_CAROLIEiJ_G0025420)	Tbx15 (MGP_CAROLIEiJ_G0025419)	MGP_CAROLIEiJ_G0025418	Hao2 (MGP_CAROLIEiJ_G0025417)
Shrew mouse	MODERN SPECIES	17	Dennd2c (MGP_PahariEiJ_G0026891)	Ampd1 (MGP_PahariEiJ_G0026890)	Nras (MGP_PahariEiJ_G0026889)	Csde1 (MGP_PahariEiJ_G0026888)	Sike1 (MGP_PahariEiJ_G0026887)	Nr1h5 (MGP_PahariEiJ_G0026886)	Sycp1 (MGP_PahariEiJ_G0026885)	Tshb (MGP_PahariEiJ_G0026884)	Tspan2 (MGP_PahariEiJ_G0026883)	Ngf (MGP_PahariEiJ_G0026882)	Vangl1 (MGP_PahariEiJ_G0026881)	Casq2 (MGP_PahariEiJ_G0026880) #16	Nhlh2 (MGP_PahariEiJ_G0026879) #18	Slc22a15 (MGP_PahariEiJ_G0026878) #19	Mab21l3 (MGP_PahariEiJ_G0026877) #20	Atp1a1 (MGP_PahariEiJ_G0026876) #22	Igsf3 (MGP_PahariEiJ_G0026875) #23	Cd2 (MGP_PahariEiJ_G0026874) #24	Ptgfrn (MGP_PahariEiJ_G0026873) #25	Cd101 (MGP_PahariEiJ_G0026872) #26	Ttf2 (MGP_PahariEiJ_G0026871) #27	MGP_PahariEiJ_G0026870 #28	Vtcn1 (MGP_PahariEiJ_G0026869) #29	Man1a2 (MGP_PahariEiJ_G0026868) #30	Tent5c (MGP_PahariEiJ_G0026867) #31	Gdap2 (MGP_PahariEiJ_G0026866)	Wdr3 (MGP_PahariEiJ_G0026865)	Spag17 (MGP_PahariEiJ_G0026864)	Tbx15 (MGP_PahariEiJ_G0026863)	Wars2 (MGP_PahariEiJ_G0026862)	Hao2 (MGP_PahariEiJ_G0026861)