Bilateria	ANCESTRAL SPECIES																	ENSGT00940000154840 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000154840 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154840.b #22
Gnathostomata	ANCESTRAL SPECIES	1563															ENSGT01090000260459	ENSGT00940000154840.b #22
Euteleostomi	ANCESTRAL SPECIES	95											ENSGT00390000019377.b #16	ENSGT00390000012496.a	ENSGT00940000164480	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000155177.a ##23	ENSGT00940000155177.b #23	ENSGT00940000162718 #27	ENSGT00940000154334 #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Sarcopterygii	ANCESTRAL SPECIES	45										ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000155177.a ##23	ENSGT00940000155177.b #23	ENSGT00940000162718 #27	ENSGT00940000164746	ENSGT00940000154334 #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Tetrapoda	ANCESTRAL SPECIES	175									ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000164480	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000234540.E #24	ENSGT00940000162718 #27	ENSGT00940000155177.b #23	ENSGT00940000155177.a ##23	ENSGT00940000158367 #25	ENSGT01020000230623
Amniota	ANCESTRAL SPECIES	54							ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00940000155177.b #23	ENSGT00940000155177.a ##23	ENSGT00940000161722 #26	ENSGT00940000158367 #25	ENSGT01030000234540.E #24	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00940000161118	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556
Mammalia	ANCESTRAL SPECIES	69	ENSGT00520000055635.c.a	ENSGT00940000161118	ENSGT00390000003024	ENSGT00390000002329	ENSGT00390000002563.b.a.b	ENSGT00940000159279	ENSGT00530000063627.b	ENSGT00940000162632	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Theria	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT00960000186961	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Eutheria	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a	ENSGT00940000159013
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a	ENSGT00940000159013
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Glires	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Murinae	ANCESTRAL SPECIES	5	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus	ANCESTRAL SPECIES	7	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Steppe mouse	MODERN SPECIES	3036										Casq2 (ENSMSIG00000017951) #16	ENSMSIG00000017944 #17	Nhlh2 (ENSMSIG00000017937) #18	Slc22a15 (ENSMSIG00000017867) #19	Mab21l3 (ENSMSIG00000017843) #20	ENSMSIG00000017831 #21	Atp1a1 (ENSMSIG00000017781) #22	Igsf3 (ENSMSIG00000017718) #23	Cd2 (ENSMSIG00000017692) #24	Ptgfrn (ENSMSIG00000017639) #25	Cd101 (ENSMSIG00000017562) #26	Ttf2 (ENSMSIG00000017516) #27	ENSMSIG00000017406 #28	Vtcn1 (ENSMSIG00000017388) #29	Man1a2 (ENSMSIG00000017361) #30	Tent5c (ENSMSIG00000017352) #31
spretus	MODERN SPECIES	12	Dennd2c (MGP_SPRETEiJ_G0026397)	Ampd1 (MGP_SPRETEiJ_G0026396)	Nras (MGP_SPRETEiJ_G0026395)	Csde1 (MGP_SPRETEiJ_G0026394)	Sike1 (MGP_SPRETEiJ_G0026393)	Nr1h5 (MGP_SPRETEiJ_G0026392)	Sycp1 (MGP_SPRETEiJ_G0026391)	Tshb (MGP_SPRETEiJ_G0026390)	Tspan2 (MGP_SPRETEiJ_G0026389)	Ngf (MGP_SPRETEiJ_G0026388)	Vangl1 (MGP_SPRETEiJ_G0026387)	Casq2 (MGP_SPRETEiJ_G0026386) #16	Nhlh2 (MGP_SPRETEiJ_G0026385) #18	Slc22a15 (MGP_SPRETEiJ_G0026384) #19	Mab21l3 (MGP_SPRETEiJ_G0026383) #20	Atp1a1 (MGP_SPRETEiJ_G0026382) #22	Igsf3 (MGP_SPRETEiJ_G0026381) #23	Cd2 (MGP_SPRETEiJ_G0026380) #24	Ptgfrn (MGP_SPRETEiJ_G0026379) #25	Cd101 (MGP_SPRETEiJ_G0026378) #26	Ttf2 (MGP_SPRETEiJ_G0026377) #27	Trim45 (MGP_SPRETEiJ_G0026376) #28	Vtcn1 (MGP_SPRETEiJ_G0026375) #29	Man1a2 (MGP_SPRETEiJ_G0026374) #30	Tent5c (MGP_SPRETEiJ_G0026373) #31	Gdap2 (MGP_SPRETEiJ_G0026372)	Wdr3 (MGP_SPRETEiJ_G0026371)	Spag17 (MGP_SPRETEiJ_G0026370)	Tbx15 (MGP_SPRETEiJ_G0026369)	Wars2 (MGP_SPRETEiJ_G0026368)	Hao2 (MGP_SPRETEiJ_G0026367)
Mouse	MODERN SPECIES	12	Dennd2c (ENSMUSG00000007379)	Ampd1 (ENSMUSG00000070385)	Nras (ENSMUSG00000027852)	Csde1 (ENSMUSG00000068823)	Sike1 (ENSMUSG00000027854)	Nr1h5 (ENSMUSG00000048938)	Sycp1 (ENSMUSG00000027855)	Tshb (ENSMUSG00000027857)	Tspan2 (ENSMUSG00000027858)	Ngf (ENSMUSG00000027859)	Vangl1 (ENSMUSG00000027860)	Casq2 (ENSMUSG00000027861) #16	Nhlh2 (ENSMUSG00000048540) #18	Slc22a15 (ENSMUSG00000033147) #19	Mab21l3 (ENSMUSG00000044313) #20	Atp1a1 (ENSMUSG00000033161) #22	Igsf3 (ENSMUSG00000042035) #23	Cd2 (ENSMUSG00000027863) #24	Ptgfrn (ENSMUSG00000027864) #25	Cd101 (ENSMUSG00000086564) #26	Ttf2 (ENSMUSG00000033222) #27	Trim45 (ENSMUSG00000033233) #28	Vtcn1 (ENSMUSG00000051076) #29	Man1a2 (ENSMUSG00000008763) #30	Tent5c (ENSMUSG00000044468) #31	Gdap2 (ENSMUSG00000027865)	Wdr3 (ENSMUSG00000033285)	Spag17 (ENSMUSG00000027867)	Tbx15 (ENSMUSG00000027868)	Wars2 (ENSMUSG00000004233)	Hao2 (ENSMUSG00000027870)
Ryukyu mouse	MODERN SPECIES	12	Dennd2c (MGP_CAROLIEiJ_G0025447)	Ampd1 (MGP_CAROLIEiJ_G0025446)	Nras (MGP_CAROLIEiJ_G0025445)	Csde1 (MGP_CAROLIEiJ_G0025444)	Sike1 (MGP_CAROLIEiJ_G0025443)	Nr1h5 (MGP_CAROLIEiJ_G0025442)	MGP_CAROLIEiJ_G0025441	Tshb (MGP_CAROLIEiJ_G0025440)	Tspan2 (MGP_CAROLIEiJ_G0025439)	Ngf (MGP_CAROLIEiJ_G0025438)	Vangl1 (MGP_CAROLIEiJ_G0025437)	Casq2 (MGP_CAROLIEiJ_G0025436) #16	Nhlh2 (MGP_CAROLIEiJ_G0025435) #18	Slc22a15 (MGP_CAROLIEiJ_G0025434) #19	Mab21l3 (MGP_CAROLIEiJ_G0025433) #20	Atp1a1 (MGP_CAROLIEiJ_G0025432) #22	Igsf3 (MGP_CAROLIEiJ_G0025431) #23	Cd2 (MGP_CAROLIEiJ_G0025430) #24	Ptgfrn (MGP_CAROLIEiJ_G0025429) #25	Cd101 (MGP_CAROLIEiJ_G0025428) #26	Ttf2 (MGP_CAROLIEiJ_G0025427) #27	MGP_CAROLIEiJ_G0025426 #28	Vtcn1 (MGP_CAROLIEiJ_G0025425) #29	Man1a2 (MGP_CAROLIEiJ_G0025424) #30	Tent5c (MGP_CAROLIEiJ_G0025423) #31	Gdap2 (MGP_CAROLIEiJ_G0025422)	Wdr3 (MGP_CAROLIEiJ_G0025421)	Spag17 (MGP_CAROLIEiJ_G0025420)	Tbx15 (MGP_CAROLIEiJ_G0025419)	MGP_CAROLIEiJ_G0025418	Hao2 (MGP_CAROLIEiJ_G0025417)
Shrew mouse	MODERN SPECIES	17	Dennd2c (MGP_PahariEiJ_G0026891)	Ampd1 (MGP_PahariEiJ_G0026890)	Nras (MGP_PahariEiJ_G0026889)	Csde1 (MGP_PahariEiJ_G0026888)	Sike1 (MGP_PahariEiJ_G0026887)	Nr1h5 (MGP_PahariEiJ_G0026886)	Sycp1 (MGP_PahariEiJ_G0026885)	Tshb (MGP_PahariEiJ_G0026884)	Tspan2 (MGP_PahariEiJ_G0026883)	Ngf (MGP_PahariEiJ_G0026882)	Vangl1 (MGP_PahariEiJ_G0026881)	Casq2 (MGP_PahariEiJ_G0026880) #16	Nhlh2 (MGP_PahariEiJ_G0026879) #18	Slc22a15 (MGP_PahariEiJ_G0026878) #19	Mab21l3 (MGP_PahariEiJ_G0026877) #20	Atp1a1 (MGP_PahariEiJ_G0026876) #22	Igsf3 (MGP_PahariEiJ_G0026875) #23	Cd2 (MGP_PahariEiJ_G0026874) #24	Ptgfrn (MGP_PahariEiJ_G0026873) #25	Cd101 (MGP_PahariEiJ_G0026872) #26	Ttf2 (MGP_PahariEiJ_G0026871) #27	MGP_PahariEiJ_G0026870 #28	Vtcn1 (MGP_PahariEiJ_G0026869) #29	Man1a2 (MGP_PahariEiJ_G0026868) #30	Tent5c (MGP_PahariEiJ_G0026867) #31	Gdap2 (MGP_PahariEiJ_G0026866)	Wdr3 (MGP_PahariEiJ_G0026865)	Spag17 (MGP_PahariEiJ_G0026864)	Tbx15 (MGP_PahariEiJ_G0026863)	Wars2 (MGP_PahariEiJ_G0026862)	Hao2 (MGP_PahariEiJ_G0026861)
Rat	MODERN SPECIES	11	Dennd2c (ENSRNOG00000018716)	Ampd1 (ENSRNOG00000018656)	Nras (ENSRNOG00000023079)	Csde1 (ENSRNOG00000061058)	Sike1 (ENSRNOG00000017502)	Nr1h5 (ENSRNOG00000023073)	Sycp1 (ENSRNOG00000016835)	Tshb (ENSRNOG00000016793)	Tspan2 (ENSRNOG00000023338)	Ngf (ENSRNOG00000016571)	Vangl1 (ENSRNOG00000016477)	Casq2 (ENSRNOG00000016243) #16	Nhlh2 (ENSRNOG00000054375) #18	Slc22a15 (ENSRNOG00000033051) #19	Mab21l3 (ENSRNOG00000016044) #20	Atp1a1 (ENSRNOG00000030019) #22	Igsf3 (ENSRNOG00000023851) #23	Cd2 (ENSRNOG00000015821) #24	ENSRNOG00000069649	Ptgfrn (ENSRNOG00000015655) #25	Cd101 (ENSRNOG00000037190) #26	Ttf2 (ENSRNOG00000057761) #27	Trim45 (ENSRNOG00000015347) #28	Vtcn1 (ENSRNOG00000015279) #29	ENSRNOG00000067753	Man1a2 (ENSRNOG00000015226) #30	Tent5c (ENSRNOG00000070242) #31	Gdap2 (ENSRNOG00000019754)	Wdr3 (ENSRNOG00000019670)	Spag17 (ENSRNOG00000037196)	Tbx15 (ENSRNOG00000019565)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000165376	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Northern American deer mouse	MODERN SPECIES	19	Dennd2c (ENSPEMG00000002658)	Ampd1 (ENSPEMG00000017567)	Nras (ENSPEMG00000029639)	Csde1 (ENSPEMG00000020357)	Sike1 (ENSPEMG00000020550)	Nr1h5 (ENSPEMG00000021165)	Sycp1 (ENSPEMG00000023338)	Tshb (ENSPEMG00000024182)	Tspan2 (ENSPEMG00000023387)	Ngf (ENSPEMG00000001587)	Vangl1 (ENSPEMG00000026640)	Casq2 (ENSPEMG00000012959) #16	Nhlh2 (ENSPEMG00000025983) #18	Slc22a15 (ENSPEMG00000023603) #19	Mab21l3 (ENSPEMG00000023035) #20	Atp1a1 (ENSPEMG00000010999) #22	Igsf3 (ENSPEMG00000011916) #23	Cd2 (ENSPEMG00000018550) #24	Ptgfrn (ENSPEMG00000009682) #25	Cd101 (ENSPEMG00000008402) #26	ENSPEMG00000010330	ENSPEMG00000010451	Trim45 (ENSPEMG00000007787) #28	ENSPEMG00000027103 #29	Man1a2 (ENSPEMG00000007670) #30	ENSPEMG00000031182 #31	Gdap2 (ENSPEMG00000020913)	Wdr3 (ENSPEMG00000011928)	Spag17 (ENSPEMG00000012291)	Tbx15 (ENSPEMG00000026645)	ENSPEMG00000018152
Prairie vole	MODERN SPECIES	8	Ampd1 (ENSMOCG00000010785)	Nras (ENSMOCG00000022441)	Csde1 (ENSMOCG00000018960)	ENSMOCG00000009367	Sike1 (ENSMOCG00000000516)	Nr1h5 (ENSMOCG00000012316)	Sycp1 (ENSMOCG00000009622)	Tshb (ENSMOCG00000006126)	Tspan2 (ENSMOCG00000003591)	Ngf (ENSMOCG00000021179)	Vangl1 (ENSMOCG00000018281)	Casq2 (ENSMOCG00000014851) #16	Nhlh2 (ENSMOCG00000007572) #18	ENSMOCG00000020465 #19	Mab21l3 (ENSMOCG00000016617) #20	Atp1a1 (ENSMOCG00000006963) #22	Igsf3 (ENSMOCG00000005813) #23	Ptgfrn (ENSMOCG00000020768) #25	Ttf2 (ENSMOCG00000008415) #27	Trim45 (ENSMOCG00000000422) #28	Vtcn1 (ENSMOCG00000000748) #29	Man1a2 (ENSMOCG00000020901) #30	Tent5c (ENSMOCG00000018840) #31	Gdap2 (ENSMOCG00000011700)	Wdr3 (ENSMOCG00000014361)	Spag17 (ENSMOCG00000001590)	ENSMOCG00000009935	Tbx15 (ENSMOCG00000012596)	Wars2 (ENSMOCG00000005144)	ENSMOCG00000020989	ENSMOCG00000020634
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000165376	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Chinese hamster chok1gshd	MODERN SPECIES	66	Nras (ENSCGRG00001020093)	ENSCGRG00001016833	ENSCGRG00001011859	Sike1 (ENSCGRG00001023509)	Nr1h5 (ENSCGRG00001022882)	Sycp1 (ENSCGRG00001010102)	ENSCGRG00001006375	Tshb (ENSCGRG00001012202)	Tspan2 (ENSCGRG00001014655)	Ngf (ENSCGRG00001000250)	Vangl1 (ENSCGRG00001022127)	Casq2 (ENSCGRG00001013746) #16	Nhlh2 (ENSCGRG00001009328) #18	Slc22a15 (ENSCGRG00001018525) #19	Mab21l3 (ENSCGRG00001018373) #20	Atp1a1 (ENSCGRG00001024330) #22	Igsf3 (ENSCGRG00001017829) #23	Cd2 (ENSCGRG00001019348) #24	Ptgfrn (ENSCGRG00001022148) #25	Cd101 (ENSCGRG00001024359) #26	ENSCGRG00001006277	Trim45 (ENSCGRG00001000157) #28	Vtcn1 (ENSCGRG00001015357) #29	Man1a2 (ENSCGRG00001020266) #30	Tent5c (ENSCGRG00001005586) #31	Gdap2 (ENSCGRG00001012369)	Wdr3 (ENSCGRG00001019544)	Spag17 (ENSCGRG00001013560)	Tbx15 (ENSCGRG00001024224)	Wars2 (ENSCGRG00001018718)	Hao2 (ENSCGRG00001020203)
Golden Hamster	MODERN SPECIES	681	Ampd1 (ENSMAUG00000001096)	Nras (ENSMAUG00000019927)	Csde1 (ENSMAUG00000014031)	Sike1 (ENSMAUG00000012482)	Nr1h5 (ENSMAUG00000010803)	Sycp1 (ENSMAUG00000000328)	Tshb (ENSMAUG00000005156)	Tspan2 (ENSMAUG00000004539)	ENSMAUG00000002276	Vangl1 (ENSMAUG00000009480)	Casq2 (ENSMAUG00000000284) #16	Nhlh2 (ENSMAUG00000016936) #18	Slc22a15 (ENSMAUG00000010758) #19	Mab21l3 (ENSMAUG00000009568) #20	ENSMAUG00000008452	Atp1a1 (ENSMAUG00000017136) #22	ENSMAUG00000017849	Igsf3 (ENSMAUG00000013987) #23	Cd2 (ENSMAUG00000012774) #24	Ptgfrn (ENSMAUG00000002851) #25	Cd101 (ENSMAUG00000017674) #26	ENSMAUG00000016725	Trim45 (ENSMAUG00000013623) #28	Vtcn1 (ENSMAUG00000015061) #29	Man1a2 (ENSMAUG00000000417) #30	Tent5c (ENSMAUG00000017728) #31	ENSMAUG00000017297	Gdap2 (ENSMAUG00000014132)	Wdr3 (ENSMAUG00000002574)	Spag17 (ENSMAUG00000008022)
Upper Galilee mountains blind mole rat	MODERN SPECIES	868	Dennd2c (ENSNGAG00000023499)	Ampd1 (ENSNGAG00000023553)	Nras (ENSNGAG00000007289)	ENSNGAG00000021929	Sike1 (ENSNGAG00000016770)	Nr1h5 (ENSNGAG00000010800)	Sycp1 (ENSNGAG00000012549)	Tshb (ENSNGAG00000001574)	Tspan2 (ENSNGAG00000014905)	Ngf (ENSNGAG00000018398)	Vangl1 (ENSNGAG00000021078)	Casq2 (ENSNGAG00000012360) #16	Nhlh2 (ENSNGAG00000022644) #18	ENSNGAG00000017546 #19	Mab21l3 (ENSNGAG00000013724) #20	Atp1a1 (ENSNGAG00000022692) #22	Igsf3 (ENSNGAG00000024078) #23	Cd2 (ENSNGAG00000015298) #24
Lesser Egyptian jerboa	MODERN SPECIES	144	Ampd1 (ENSJJAG00000021675)	ENSJJAG00000020941	Csde1 (ENSJJAG00000019571)	ENSJJAG00000019089	Nr1h5 (ENSJJAG00000018578)	ENSJJAG00000018067	Tshb (ENSJJAG00000001329)	Tspan2 (ENSJJAG00000000832)	Ngf (ENSJJAG00000022901)	ENSJJAG00000021722	Vangl1 (ENSJJAG00000021462)	Casq2 (ENSJJAG00000020862) #16	Nhlh2 (ENSJJAG00000019983) #18	Slc22a15 (ENSJJAG00000000255) #19	Mab21l3 (ENSJJAG00000022482) #20	Atp1a1 (ENSJJAG00000020791) #22	Igsf3 (ENSJJAG00000017489) #23	Cd2 (ENSJJAG00000019842) #24	Ptgfrn (ENSJJAG00000019616) #25	Ttf2 (ENSJJAG00000015225) #27	Trim45 (ENSJJAG00000007227) #28	Vtcn1 (ENSJJAG00000019207) #29	ENSJJAG00000018170	Man1a2 (ENSJJAG00000017865) #30	Tent5c (ENSJJAG00000013174) #31	ENSJJAG00000017333	ENSJJAG00000014767	ENSJJAG00000013768	ENSJJAG00000013505	Wdr3 (ENSJJAG00000013861)	Spag17 (ENSJJAG00000008428)
Kangaroo rat	MODERN SPECIES	397	Bcas2 (ENSDORG00000014220)	Dennd2c (ENSDORG00000014222)	Ampd1 (ENSDORG00000005377)	Nras (ENSDORG00000025267)	Csde1 (ENSDORG00000011609)	Sike1 (ENSDORG00000005162)	ENSDORG00000027896	Tshb (ENSDORG00000003238)	Tspan2 (ENSDORG00000003239)	Ngf (ENSDORG00000025001)	Vangl1 (ENSDORG00000013118)	Casq2 (ENSDORG00000013122) #16	ENSDORG00000010026 #19	ENSDORG00000028402 #19	Mab21l3 (ENSDORG00000010259) #20	Atp1a1 (ENSDORG00000028959) #22	Igsf3 (ENSDORG00000010085) #23	Ptgfrn (ENSDORG00000013777) #25	Cd101 (ENSDORG00000013779) #26	Ttf2 (ENSDORG00000013781) #27	Vtcn1 (ENSDORG00000013786) #29	Man1a2 (ENSDORG00000025695) #30	Tent5c (ENSDORG00000010159) #31	Gdap2 (ENSDORG00000001079)	Wdr3 (ENSDORG00000011031)	Spag17 (ENSDORG00000011032)	ENSDORG00000023254	Tbx15 (ENSDORG00000005620)	Wars2 (ENSDORG00000008562)	Hao2 (ENSDORG00000003236)	ENSDORG00000007977
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini	ANCESTRAL SPECIES	62	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Squirrel	MODERN SPECIES	227		AMPD1 (ENSSTOG00000015082)	NRAS (ENSSTOG00000023151)	ENSSTOG00000032722	SIKE1 (ENSSTOG00000001684)	ENSSTOG00000027072	ENSSTOG00000010304	TSHB (ENSSTOG00000022113)	TSPAN2 (ENSSTOG00000020353)	NGF (ENSSTOG00000005518)	VANGL1 (ENSSTOG00000015734)	CASQ2 (ENSSTOG00000015738) #16	NHLH2 (ENSSTOG00000019698) #18	SLC22A15 (ENSSTOG00000016141) #19	MAB21L3 (ENSSTOG00000026516) #20	ATP1A1 (ENSSTOG00000016127) #22	IGSF3 (ENSSTOG00000022906) #23	CD2 (ENSSTOG00000004188) #24	PTGFRN (ENSSTOG00000010916) #25	CD101 (ENSSTOG00000010919) #26	TTF2 (ENSSTOG00000010927) #27	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369) #28	VTCN1 (ENSSTOG00000007389) #29	MAN1A2 (ENSSTOG00000016016) #30	TENT5C (ENSSTOG00000010392) #31	GDAP2 (ENSSTOG00000024699)	WDR3 (ENSSTOG00000003504)	SPAG17 (ENSSTOG00000003532)	TBX15 (ENSSTOG00000013040)	WARS2 (ENSSTOG00000013051)
Arctic ground squirrel	MODERN SPECIES	134	DENND2C (ENSUPAG00010022334)	AMPD1 (ENSUPAG00010022337)	NRAS (ENSUPAG00010022339)	CSDE1 (ENSUPAG00010022340)	SIKE1 (ENSUPAG00010022488)	ENSUPAG00010022495	SYCP1 (ENSUPAG00010022501)	TSHB (ENSUPAG00010022509)	TSPAN2 (ENSUPAG00010022515)	NGF (ENSUPAG00010022522)	VANGL1 (ENSUPAG00010022525)	CASQ2 (ENSUPAG00010022531) #16	NHLH2 (ENSUPAG00010022533) #18	SLC22A15 (ENSUPAG00010022536) #19	MAB21L3 (ENSUPAG00010022542) #20	ATP1A1 (ENSUPAG00010022544) #22
Alpin marmot	MODERN SPECIES	79	NRAS (ENSMMMG00000014434)	CSDE1 (ENSMMMG00000014448)	SIKE1 (ENSMMMG00000014866)	ENSMMMG00000014870	ENSMMMG00000014879	SYCP1 (ENSMMMG00000014892)	ENSMMMG00000014952	TSHB (ENSMMMG00000014957)	TSPAN2 (ENSMMMG00000014968)	NGF (ENSMMMG00000014973)	VANGL1 (ENSMMMG00000014977)	CASQ2 (ENSMMMG00000014991) #16	NHLH2 (ENSMMMG00000015011) #18	SLC22A15 (ENSMMMG00000015020) #19	MAB21L3 (ENSMMMG00000015051) #20	ATP1A1 (ENSMMMG00000015066) #22	IGSF3 (ENSMMMG00000015107) #23	CD2 (ENSMMMG00000015127) #24	PTGFRN (ENSMMMG00000015141) #25	CD101 (ENSMMMG00000015154) #26	TTF2 (ENSMMMG00000015196) #27	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213) #28	VTCN1 (ENSMMMG00000015255) #29	MAN1A2 (ENSMMMG00000015283) #30	TENT5C (ENSMMMG00000015304) #31	GDAP2 (ENSMMMG00000015308)	WDR3 (ENSMMMG00000015336)	ENSMMMG00000015354	TBX15 (ENSMMMG00000015373)	WARS2 (ENSMMMG00000015379)
Eurasian red squirrel	MODERN SPECIES		AMPD1 (ENSSVLG00005000465)	ENSSVLG00005000492	CSDE1 (ENSSVLG00005000559)	SIKE1 (ENSSVLG00005000707)	ENSSVLG00005000743	SYCP1 (ENSSVLG00005000819)	TSHB (ENSSVLG00005000935)	TSPAN2 (ENSSVLG00005000967)	NGF (ENSSVLG00005001008)	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032)	CASQ2 (ENSSVLG00005001056) #16	NHLH2 (ENSSVLG00005001085) #18	SLC22A15 (ENSSVLG00005001098) #19	MAB21L3 (ENSSVLG00005001135) #20	ATP1A1 (ENSSVLG00005001182) #22	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236) #23	CD2 (ENSSVLG00005001265) #24	PTGFRN (ENSSVLG00005001283) #25	CD101 (ENSSVLG00005001302) #26	ENSSVLG00005001327 #27	ENSSVLG00005001350 #27	TRIM45 (ENSSVLG00005001388) #28	VTCN1 (ENSSVLG00005001433) #29	MAN1A2 (ENSSVLG00005001469) #30	TENT5C (ENSSVLG00005001495) #31	GDAP2 (ENSSVLG00005001518)	ENSSVLG00005001561	WDR3 (ENSSVLG00005001572)	ENSSVLG00005001591
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Naked mole-rat female	MODERN SPECIES	10	CSDE1 (ENSHGLG00000009620)	SIKE1 (ENSHGLG00000015408)	ENSHGLG00000032648	ENSHGLG00000004974	ENSHGLG00000047308	ENSHGLG00000006103	TSHB (ENSHGLG00000014600)	TSPAN2 (ENSHGLG00000010786)	NGF (ENSHGLG00000044577)	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399)	CASQ2 (ENSHGLG00000038257) #16	NHLH2 (ENSHGLG00000046588) #18	SLC22A15 (ENSHGLG00000011061) #19	MAB21L3 (ENSHGLG00000009205) #20	ATP1A1 (ENSHGLG00000009304) #22	IGSF3 (ENSHGLG00000018539) #23	CD2 (ENSHGLG00000014947) #24	PTGFRN (ENSHGLG00000019106) #25	CD101 (ENSHGLG00000018298) #26	TTF2 (ENSHGLG00000012459) #27	TRIM45 (ENSHGLG00000017735) #28	VTCN1 (ENSHGLG00000018792) #29	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646) #30	FAM46C (ENSHGLG00000043157) #31	ENSHGLG00000041120	ENSHGLG00000017537	WDR3 (ENSHGLG00000017936)	SPAG17 (ENSHGLG00000009162)	ENSHGLG00000032534
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000167338	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Guinea pig	MODERN SPECIES	2	DENND2C (ENSCPOG00000012944)	AMPD1 (ENSCPOG00000002591)	NRAS (ENSCPOG00000021833)	CSDE1 (ENSCPOG00000040388)	SIKE1 (ENSCPOG00000007406)	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690)	TSHB (ENSCPOG00000030694)	TSPAN2 (ENSCPOG00000008376)	NGF (ENSCPOG00000024033)	VANGL1 (ENSCPOG00000001701)	CASQ2 (ENSCPOG00000001703) #16	NHLH2 (ENSCPOG00000026593) #18	SLC22A15 (ENSCPOG00000009506) #19	MAB21L3 (ENSCPOG00000009511) #20	ATP1A1 (ENSCPOG00000000927) #22	IGSF3 (ENSCPOG00000002029) #23	CD2 (ENSCPOG00000036418) #24	PTGFRN (ENSCPOG00000015740) #25	CD101 (ENSCPOG00000015741) #26	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001) #29	MAN1A2 (ENSCPOG00000004935) #30	TENT5C (ENSCPOG00000035573) #31	GDAP2 (ENSCPOG00000012599)	WDR3 (ENSCPOG00000011305)	SPAG17 (ENSCPOG00000011317)	TBX15 (ENSCPOG00000000615)	WARS2 (ENSCPOG00000000616)	ENSCPOG00000001451	ENSCPOG00000033437
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.d	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000167338	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Long-tailed chinchilla	MODERN SPECIES	142	AMPD1 (ENSCLAG00000006645)	NRAS (ENSCLAG00000005888)	CSDE1 (ENSCLAG00000006618)	SIKE1 (ENSCLAG00000005344)	ENSCLAG00000006997	ENSCLAG00000013132	ENSCLAG00000004900	TSHB (ENSCLAG00000011105)	TSPAN2 (ENSCLAG00000007865)	NGF (ENSCLAG00000004815)	VANGL1 (ENSCLAG00000006270)	CASQ2 (ENSCLAG00000007972) #16	NHLH2 (ENSCLAG00000005691) #18	SLC22A15 (ENSCLAG00000006619) #19	MAB21L3 (ENSCLAG00000004428) #20	ATP1A1 (ENSCLAG00000005733) #22	IGSF3 (ENSCLAG00000006923) #23	CD2 (ENSCLAG00000007838) #24	PTGFRN (ENSCLAG00000008229) #25	CD101 (ENSCLAG00000010019) #26	ENSCLAG00000014230	TRIM45 (ENSCLAG00000010898) #28	VTCN1 (ENSCLAG00000014982) #29	MAN1A2 (ENSCLAG00000008573) #30	TENT5C (ENSCLAG00000006985) #31	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843)	WDR3 (ENSCLAG00000010657)	SPAG17 (ENSCLAG00000006388)	TBX15 (ENSCLAG00000008292)	WARS2 (ENSCLAG00000004926)
Degu	MODERN SPECIES	181	ENSODEG00000007383	SIKE1 (ENSODEG00000007343)	ENSODEG00000010107	SYCP1 (ENSODEG00000006927)	TSHB (ENSODEG00000009005)	TSPAN2 (ENSODEG00000007319)	NGF (ENSODEG00000006538)	ENSODEG00000006379	ENSODEG00000008957	ENSODEG00000008559	VANGL1 (ENSODEG00000010599)	CASQ2 (ENSODEG00000009014) #16	NHLH2 (ENSODEG00000008157) #18	SLC22A15 (ENSODEG00000007565) #19	MAB21L3 (ENSODEG00000005924) #20	ATP1A1 (ENSODEG00000006810) #22	ENSODEG00000006132	IGSF3 (ENSODEG00000007439) #23	ENSODEG00000006855	PTGFRN (ENSODEG00000006807) #25	CD101 (ENSODEG00000006286) #26	ENSODEG00000006362	TRIM45 (ENSODEG00000007020) #28	VTCN1 (ENSODEG00000006757) #29	MAN1A2 (ENSODEG00000005674) #30	TENT5C (ENSODEG00000006187) #31	ENSODEG00000005813
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368.c.b	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Rabbit	MODERN SPECIES	4	DENND2C (ENSOCUG00000016789)	AMPD1 (ENSOCUG00000016424)	NRAS (ENSOCUG00000022455)	CSDE1 (ENSOCUG00000016438)	SIKE1 (ENSOCUG00000016457)	ENSOCUG00000023188	ENSOCUG00000022499	ENSOCUG00000016463	Tshb (ENSOCUG00000023876)	TSPAN2 (ENSOCUG00000001279)	NGF (ENSOCUG00000000659)	VANGL1 (ENSOCUG00000016240)	CASQ2 (ENSOCUG00000010594) #16	SLC22A15 (ENSOCUG00000015370) #19	MAB21L3 (ENSOCUG00000015382) #20	ATP1A1 (ENSOCUG00000001324) #22	IGSF3 (ENSOCUG00000005284) #23	CD2 (ENSOCUG00000008474) #24	PTGFRN (ENSOCUG00000000608) #25	CD101 (ENSOCUG00000000612) #26	TTF2 (ENSOCUG00000000613) #27	TRIM45 (ENSOCUG00000000237) #28	VTCN1 (ENSOCUG00000026343) #29	MAN1A2 (ENSOCUG00000012648) #30	ENSOCUG00000026654	ENSOCUG00000027717	GDAP2 (ENSOCUG00000007568)	WDR3 (ENSOCUG00000007572)	SPAG17 (ENSOCUG00000007586)	TBX15 (ENSOCUG00000012320)	WARS2 (ENSOCUG00000012330)
Pika	MODERN SPECIES	2757																ENSOPRG00000006712 #22	ENSOPRG00000006746	ENSOPRG00000006754 #23	ENSOPRG00000006760	ENSOPRG00000006767 #24
Tree shrew	MODERN SPECIES	3085																ATP1A1 (ENSTBEG00000010568) #22
Primates	ANCESTRAL SPECIES	4	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a	ENSGT00940000159013
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a	ENSGT00940000159013
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Hominidae	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Pan	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000000080.a.a.j	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Chimpanzee	MODERN SPECIES		DENND2C (ENSPTRG00000001137)	AMPD1 (ENSPTRG00000001139)	NRAS (ENSPTRG00000001140)	CSDE1 (ENSPTRG00000033721)	SIKE1 (ENSPTRG00000001142)	SYCP1 (ENSPTRG00000001143)	TSHB (ENSPTRG00000001144)	TSPAN2 (ENSPTRG00000001145)	ENSPTRG00000050090	ENSPTRG00000042869	VANGL1 (ENSPTRG00000001147)	CASQ2 (ENSPTRG00000001148) #16	NHLH2 (ENSPTRG00000044281) #18	SLC22A15 (ENSPTRG00000001150) #19	MAB21L3 (ENSPTRG00000001151) #20	ATP1A1 (ENSPTRG00000001152) #22	ENSPTRG00000050070	CD58 (ENSPTRG00000001153)	IGSF3 (ENSPTRG00000001154) #23	CD2 (ENSPTRG00000001157) #24	PTGFRN (ENSPTRG00000001158) #25	CD101 (ENSPTRG00000001160) #26	TTF2 (ENSPTRG00000001162) #27	TRIM45 (ENSPTRG00000001163) #28	VTCN1 (ENSPTRG00000001164) #29	MAN1A2 (ENSPTRG00000024134) #30	TENT5C (ENSPTRG00000049021) #31	GDAP2 (ENSPTRG00000001167)	WDR3 (ENSPTRG00000001168)	SPAG17 (ENSPTRG00000001170)	TBX15 (ENSPTRG00000001172)
Bonobo	MODERN SPECIES		DENND2C (ENSPPAG00000033748)	AMPD1 (ENSPPAG00000036239)	NRAS (ENSPPAG00000037915)	CSDE1 (ENSPPAG00000025861)	SIKE1 (ENSPPAG00000030969)	SYCP1 (ENSPPAG00000031200)	TSHB (ENSPPAG00000031428)	TSPAN2 (ENSPPAG00000028377)	ENSPPAG00000039894	ENSPPAG00000040918	VANGL1 (ENSPPAG00000037996)	CASQ2 (ENSPPAG00000028248) #16	NHLH2 (ENSPPAG00000022478) #18	SLC22A15 (ENSPPAG00000033451) #19	MAB21L3 (ENSPPAG00000037392) #20	ATP1A1 (ENSPPAG00000039938) #22	CD58 (ENSPPAG00000036763)	CD2 (ENSPPAG00000030761) #24	PTGFRN (ENSPPAG00000043179) #25	CD101 (ENSPPAG00000032745) #26	TTF2 (ENSPPAG00000027542) #27	TRIM45 (ENSPPAG00000027104) #28	VTCN1 (ENSPPAG00000023467) #29	MAN1A2 (ENSPPAG00000028925) #30	TENT5C (ENSPPAG00000023449) #31	GDAP2 (ENSPPAG00000028536)	WDR3 (ENSPPAG00000029068)	ENSPPAG00000033918	TBX15 (ENSPPAG00000035967)	ENSPPAG00000027227	WARS2 (ENSPPAG00000032746)
Human	MODERN SPECIES		BCAS2 (ENSG00000116752)	DENND2C (ENSG00000175984)	AMPD1 (ENSG00000116748)	NRAS (ENSG00000213281)	CSDE1 (ENSG00000009307)	SIKE1 (ENSG00000052723)	SYCP1 (ENSG00000198765)	TSHB (ENSG00000134200)	TSPAN2 (ENSG00000134198)	NGF (ENSG00000134259)	VANGL1 (ENSG00000173218)	CASQ2 (ENSG00000118729) #16	NHLH2 (ENSG00000177551) #18	SLC22A15 (ENSG00000163393) #19	MAB21L3 (ENSG00000173212) #20	ATP1A1 (ENSG00000163399) #22	CD58 (ENSG00000116815)	IGSF3 (ENSG00000143061) #23	CD2 (ENSG00000116824) #24	PTGFRN (ENSG00000134247) #25	CD101 (ENSG00000134256) #26	TTF2 (ENSG00000116830) #27	TRIM45 (ENSG00000134253) #28	VTCN1 (ENSG00000134258) #29	MAN1A2 (ENSG00000198162) #30	TENT5C (ENSG00000183508) #31	GDAP2 (ENSG00000196505)	WDR3 (ENSG00000065183)	SPAG17 (ENSG00000155761)	TBX15 (ENSG00000092607)	WARS2 (ENSG00000116874)
Gorilla	MODERN SPECIES		DENND2C (ENSGGOG00000008502)	AMPD1 (ENSGGOG00000013805)	NRAS (ENSGGOG00000043922)	CSDE1 (ENSGGOG00000002164)	SIKE1 (ENSGGOG00000015643)	SYCP1 (ENSGGOG00000015556)	TSHB (ENSGGOG00000010389)	TSPAN2 (ENSGGOG00000010083)	ENSGGOG00000040025	ENSGGOG00000037681	ENSGGOG00000026844	CASQ2 (ENSGGOG00000017029) #16	NHLH2 (ENSGGOG00000043451) #18	SLC22A15 (ENSGGOG00000014585) #19	MAB21L3 (ENSGGOG00000002308) #20	ATP1A1 (ENSGGOG00000006738) #22	CD58 (ENSGGOG00000012864)	ENSGGOG00000027658	ENSGGOG00000022319 #23	CD2 (ENSGGOG00000005260) #24	PTGFRN (ENSGGOG00000011825) #25	CD101 (ENSGGOG00000008209) #26	TTF2 (ENSGGOG00000015790) #27	TRIM45 (ENSGGOG00000014996) #28	VTCN1 (ENSGGOG00000025814) #29	MAN1A2 (ENSGGOG00000014278) #30	TENT5C (ENSGGOG00000038013) #31	ENSGGOG00000006897	WDR3 (ENSGGOG00000009982)	SPAG17 (ENSGGOG00000012975)	ENSGGOG00000043257
Orangutan	MODERN SPECIES		BCAS2 (ENSPPYG00000001000)	DENND2C (ENSPPYG00000000999)	AMPD1 (ENSPPYG00000000998)	NRAS (ENSPPYG00000000997)	CSDE1 (ENSPPYG00000000996)	SIKE1 (ENSPPYG00000037081)	SYCP1 (ENSPPYG00000000994)	ENSPPYG00000000993	TSPAN2 (ENSPPYG00000000992)	NGF (ENSPPYG00000000991)	VANGL1 (ENSPPYG00000000990)	CASQ2 (ENSPPYG00000000989) #16	NHLH2 (ENSPPYG00000000988) #18	SLC22A15 (ENSPPYG00000000987) #19	MAB21L3 (ENSPPYG00000000986) #20	ATP1A1 (ENSPPYG00000000985) #22	ENSPPYG00000000983	CD58 (ENSPPYG00000000982)	IGSF3 (ENSPPYG00000000981) #23	CD2 (ENSPPYG00000000979) #24	PTGFRN (ENSPPYG00000000978) #25	CD101 (ENSPPYG00000000977) #26	TTF2 (ENSPPYG00000000976) #27	TRIM45 (ENSPPYG00000000975) #28	VTCN1 (ENSPPYG00000000974) #29	ENSPPYG00000031903	MAN1A2 (ENSPPYG00000000973) #30	TENT5C (ENSPPYG00000000972) #31	GDAP2 (ENSPPYG00000000971)	WDR3 (ENSPPYG00000000970)	SPAG17 (ENSPPYG00000000969)
Gibbon	MODERN SPECIES	2	DENND2C (ENSNLEG00000004759)	AMPD1 (ENSNLEG00000004786)	NRAS (ENSNLEG00000034325)	CSDE1 (ENSNLEG00000004842)	SIKE1 (ENSNLEG00000004921)	SYCP1 (ENSNLEG00000004923)	TSHB (ENSNLEG00000004959)	TSPAN2 (ENSNLEG00000004961)	ENSNLEG00000035282	ENSNLEG00000030925	VANGL1 (ENSNLEG00000004984)	CASQ2 (ENSNLEG00000004999) #16	NHLH2 (ENSNLEG00000027793) #18	SLC22A15 (ENSNLEG00000005012) #19	MAB21L3 (ENSNLEG00000005038) #20	ATP1A1 (ENSNLEG00000005047) #22	CD58 (ENSNLEG00000032597)	IGSF3 (ENSNLEG00000005162) #23	CD2 (ENSNLEG00000005167) #24	PTGFRN (ENSNLEG00000005178) #25	CD101 (ENSNLEG00000005188) #26	TTF2 (ENSNLEG00000005209) #27	TRIM45 (ENSNLEG00000005248) #28	VTCN1 (ENSNLEG00000005256) #29	MAN1A2 (ENSNLEG00000005272) #30	TENT5C (ENSNLEG00000035910) #31	GDAP2 (ENSNLEG00000005283)	WDR3 (ENSNLEG00000005304)	SPAG17 (ENSNLEG00000033248)	TBX15 (ENSNLEG00000005347)	WARS2 (ENSNLEG00000005349)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Macaca	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT01100000263539.b.b.b.b.b.a.b.a.a.b.b.a.a	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.b.a.b	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Rhesus	MODERN SPECIES		AMPD1 (ENSMMUG00000001978)	NRAS (ENSMMUG00000049105)	CSDE1 (ENSMMUG00000001974)	SIKE1 (ENSMMUG00000001973)	SYCP1 (ENSMMUG00000017674)	TSHB (ENSMMUG00000058261)	TSPAN2 (ENSMMUG00000017421)	NGF (ENSMMUG00000062180)	VANGL1 (ENSMMUG00000008967)	CASQ2 (ENSMMUG00000008970) #16	NHLH2 (ENSMMUG00000053366) #18	ENSMMUG00000063202	SLC22A15 (ENSMMUG00000011860) #19	MAB21L3 (ENSMMUG00000000431) #20	ENSMMUG00000041725	ATP1A1 (ENSMMUG00000008151) #22	CD58 (ENSMMUG00000008156)	IGSF3 (ENSMMUG00000008157) #23	CD2 (ENSMMUG00000052649) #24	PTGFRN (ENSMMUG00000016900) #25	CD101 (ENSMMUG00000016904) #26	TTF2 (ENSMMUG00000016905) #27	TRIM45 (ENSMMUG00000015976) #28	VTCN1 (ENSMMUG00000016964) #29	MAN1A2 (ENSMMUG00000047035) #30	TENT5C (ENSMMUG00000004907) #31	GDAP2 (ENSMMUG00000008509)	WDR3 (ENSMMUG00000008513)	SPAG17 (ENSMMUG00000008519)	ENSMMUG00000052186	TBX15 (ENSMMUG00000009257)
Crab-eating macaque	MODERN SPECIES		AMPD1 (ENSMFAG00000038085)	NRAS (ENSMFAG00000036827)	CSDE1 (ENSMFAG00000003674)	SIKE1 (ENSMFAG00000059908)	SYCP1 (ENSMFAG00000043913)	TSHB (ENSMFAG00000000330)	TSPAN2 (ENSMFAG00000039698)	NGF (ENSMFAG00000060447)	VANGL1 (ENSMFAG00000000860)	CASQ2 (ENSMFAG00000042482) #16	ENSMFAG00000057471 #18	ENSMFAG00000057817	SLC22A15 (ENSMFAG00000042672) #19	MAB21L3 (ENSMFAG00000042466) #20	ENSMFAG00000041093	ATP1A1 (ENSMFAG00000034219) #22	ENSMFAG00000000314	CD58 (ENSMFAG00000042899)	IGSF3 (ENSMFAG00000000910) #23	CD2 (ENSMFAG00000036150) #24	PTGFRN (ENSMFAG00000038301) #25	CD101 (ENSMFAG00000033865) #26	ENSMFAG00000042516	TRIM45 (ENSMFAG00000039230) #28	VTCN1 (ENSMFAG00000037561) #29	MAN1A2 (ENSMFAG00000042171) #30	TENT5C (ENSMFAG00000063452) #31	GDAP2 (ENSMFAG00000045882)	WDR3 (ENSMFAG00000034570)	SPAG17 (ENSMFAG00000043409)	TBX15 (ENSMFAG00000044269)
Pig-tailed macaque	MODERN SPECIES	556	BCAS2 (ENSMNEG00000029335)	DENND2C (ENSMNEG00000035993)	AMPD1 (ENSMNEG00000040685)	NRAS (ENSMNEG00000044823)	CSDE1 (ENSMNEG00000045247)	SIKE1 (ENSMNEG00000013363)	SYCP1 (ENSMNEG00000036344)	TSHB (ENSMNEG00000041678)	TSPAN2 (ENSMNEG00000043519)	NGF (ENSMNEG00000037107)	VANGL1 (ENSMNEG00000030336)	CASQ2 (ENSMNEG00000028623) #16	NHLH2 (ENSMNEG00000006709) #18	SLC22A15 (ENSMNEG00000036847) #19	MAB21L3 (ENSMNEG00000044981) #20	ATP1A1 (ENSMNEG00000034326) #22	CD58 (ENSMNEG00000030019)	IGSF3 (ENSMNEG00000040709) #23	CD2 (ENSMNEG00000038892) #24	PTGFRN (ENSMNEG00000040097) #25	CD101 (ENSMNEG00000039661) #26	TTF2 (ENSMNEG00000042285) #27	TRIM45 (ENSMNEG00000035138) #28	ENSMNEG00000043941 #29	MAN1A2 (ENSMNEG00000031399) #30	TENT5C (ENSMNEG00000016833) #31	GDAP2 (ENSMNEG00000041814)	WDR3 (ENSMNEG00000039555)	SPAG17 (ENSMNEG00000037993)	TBX15 (ENSMNEG00000037058)	WARS2 (ENSMNEG00000029069)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Olive baboon	MODERN SPECIES		AMPD1 (ENSPANG00000012433)	NRAS (ENSPANG00000008181)	CSDE1 (ENSPANG00000018873)	SIKE1 (ENSPANG00000015792)	SYCP1 (ENSPANG00000012296)	TSPAN2 (ENSPANG00000008556)	NGF (ENSPANG00000048544)	ENSPANG00000038005	VANGL1 (ENSPANG00000000935)	CASQ2 (ENSPANG00000004482) #16	NHLH2 (ENSPANG00000001481) #18	SLC22A15 (ENSPANG00000003118) #19	MAB21L3 (ENSPANG00000014173) #20	ENSPANG00000037734	ENSPANG00000039208	ATP1A1 (ENSPANG00000001212) #22	CD58 (ENSPANG00000044886)	IGSF3 (ENSPANG00000000305) #23	CD2 (ENSPANG00000015878) #24	PTGFRN (ENSPANG00000023468) #25	CD101 (ENSPANG00000011817) #26	ENSPANG00000012432	TRIM45 (ENSPANG00000012295) #28	ENSPANG00000039901	VTCN1 (ENSPANG00000023608) #29	ENSPANG00000043622	ENSPANG00000042496	ENSPANG00000040057	MAN1A2 (ENSPANG00000012472) #30	TENT5C (ENSPANG00000005228) #31	GDAP2 (ENSPANG00000019088)
Cercopithecinae_d	ANCESTRAL SPECIES	49	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Drill	MODERN SPECIES	1360	BCAS2 (ENSMLEG00000036312)	DENND2C (ENSMLEG00000001523)	AMPD1 (ENSMLEG00000032457)	NRAS (ENSMLEG00000039333)	CSDE1 (ENSMLEG00000038673)	SIKE1 (ENSMLEG00000034245)	SYCP1 (ENSMLEG00000027871)	TSHB (ENSMLEG00000040982)	TSPAN2 (ENSMLEG00000036280)	NGF (ENSMLEG00000042620)	VANGL1 (ENSMLEG00000039246)	CASQ2 (ENSMLEG00000038887) #16	NHLH2 (ENSMLEG00000026800) #18	SLC22A15 (ENSMLEG00000030172) #19	MAB21L3 (ENSMLEG00000006311) #20	ATP1A1 (ENSMLEG00000030629) #22	CD58 (ENSMLEG00000033488)	ENSMLEG00000044327	IGSF3 (ENSMLEG00000000562) #23	CD2 (ENSMLEG00000036866) #24	PTGFRN (ENSMLEG00000033407) #25	CD101 (ENSMLEG00000039483) #26	TTF2 (ENSMLEG00000041549) #27	TRIM45 (ENSMLEG00000034608) #28	VTCN1 (ENSMLEG00000031487) #29	MAN1A2 (ENSMLEG00000041597) #30	TENT5C (ENSMLEG00000012342) #31	GDAP2 (ENSMLEG00000041705)	WDR3 (ENSMLEG00000035516)	SPAG17 (ENSMLEG00000043640)
Sooty mangabey	MODERN SPECIES	246	DENND2C (ENSCATG00000008808)	AMPD1 (ENSCATG00000036481)	NRAS (ENSCATG00000040984)	CSDE1 (ENSCATG00000036962)	SIKE1 (ENSCATG00000005298)	ENSCATG00000039685	SYCP1 (ENSCATG00000039270)	TSHB (ENSCATG00000039665)	TSPAN2 (ENSCATG00000034149)	NGF (ENSCATG00000017585)	VANGL1 (ENSCATG00000009145)	CASQ2 (ENSCATG00000004694) #16	NHLH2 (ENSCATG00000020039) #18	SLC22A15 (ENSCATG00000031862) #19	MAB21L3 (ENSCATG00000034482) #20	ATP1A1 (ENSCATG00000032036) #22	ENSCATG00000032280	CD58 (ENSCATG00000032372)	IGSF3 (ENSCATG00000038248) #23	CD2 (ENSCATG00000038663) #24	PTGFRN (ENSCATG00000034409) #25	CD101 (ENSCATG00000040181) #26
Vervet Monkey	MODERN SPECIES	12	DENND2C (ENSCSAG00000001653)	AMPD1 (ENSCSAG00000001655)	NRAS (ENSCSAG00000001656)	CSDE1 (ENSCSAG00000001658)	SIKE1 (ENSCSAG00000001660)	SYCP1 (ENSCSAG00000001672)	TSHB (ENSCSAG00000001678)	TSPAN2 (ENSCSAG00000001681)	NGF (ENSCSAG00000000171)	VANGL1 (ENSCSAG00000001684)	CASQ2 (ENSCSAG00000001685) #16	NHLH2 (ENSCSAG00000000172) #18	SLC22A15 (ENSCSAG00000001686) #19	MAB21L3 (ENSCSAG00000001688) #20	ENSCSAG00000001690	ATP1A1 (ENSCSAG00000001691) #22	ENSCSAG00000001692	CD58 (ENSCSAG00000001694)	IGSF3 (ENSCSAG00000001695) #23	CD2 (ENSCSAG00000001696) #24	PTGFRN (ENSCSAG00000001697) #25	CD101 (ENSCSAG00000001698) #26	ENSCSAG00000001699	TRIM45 (ENSCSAG00000001700) #28	VTCN1 (ENSCSAG00000001701) #29	MAN1A2 (ENSCSAG00000001702) #30	TENT5C (ENSCSAG00000000173) #31	GDAP2 (ENSCSAG00000001704)	WDR3 (ENSCSAG00000001705)	SPAG17 (ENSCSAG00000001708)	TBX15 (ENSCSAG00000001712)
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00390000008859.b.d.k.a.a	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950.m	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000153362.b.g	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300.c #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Golden snub-nosed monkey	MODERN SPECIES	1359											VANGL1 (ENSRROG00000045595)	CASQ2 (ENSRROG00000032390) #16	NHLH2 (ENSRROG00000028198) #18	SLC22A15 (ENSRROG00000038809) #19	MAB21L3 (ENSRROG00000041625) #20	ATP1A1 (ENSRROG00000044731) #22	ENSRROG00000032840	CD58 (ENSRROG00000001604)	IGSF3 (ENSRROG00000032335) #23	CD2 (ENSRROG00000023361) #24	PTGFRN (ENSRROG00000044241) #25	CD101 (ENSRROG00000039983) #26	TTF2 (ENSRROG00000013287) #27	TRIM45 (ENSRROG00000032031) #28	ENSRROG00000034154 #29
Black snub-nosed monkey	MODERN SPECIES	299	BCAS2 (ENSRBIG00000036310)	DENND2C (ENSRBIG00000040882)	AMPD1 (ENSRBIG00000042678)	NRAS (ENSRBIG00000043132)	ENSRBIG00000038966	SIKE1 (ENSRBIG00000042450)	SYCP1 (ENSRBIG00000040488)	TSHB (ENSRBIG00000030494)	TSPAN2 (ENSRBIG00000040980)	NGF (ENSRBIG00000043863)	VANGL1 (ENSRBIG00000040389)	CASQ2 (ENSRBIG00000044022) #16	NHLH2 (ENSRBIG00000021541) #18	SLC22A15 (ENSRBIG00000008924) #19	MAB21L3 (ENSRBIG00000028983) #20	ATP1A1 (ENSRBIG00000015454) #22	CD58 (ENSRBIG00000044416)	ENSRBIG00000035126	IGSF3 (ENSRBIG00000038679) #23	CD2 (ENSRBIG00000042753) #24	PTGFRN (ENSRBIG00000044418) #25	CD101 (ENSRBIG00000034556) #26	TTF2 (ENSRBIG00000042651) #27	TRIM45 (ENSRBIG00000027871) #28	ENSRBIG00000036563 #29	MAN1A2 (ENSRBIG00000030646) #30	TENT5C (ENSRBIG00000030666) #31	GDAP2 (ENSRBIG00000041462)	WDR3 (ENSRBIG00000039149)	SPAG17 (ENSRBIG00000041783)	TBX15 (ENSRBIG00000029551)
Platyrrhini	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.u.a	ENSGT00390000016950.o.a	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Cebidae	ANCESTRAL SPECIES	1	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.u.a	ENSGT00390000016950.o.a	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Cebidae_a	ANCESTRAL SPECIES	41	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.u.a	ENSGT00390000016950.o.a	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000153362.b.g	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Capuchin	MODERN SPECIES	32	DENND2C (ENSCCAG00000021424)	AMPD1 (ENSCCAG00000021136)	NRAS (ENSCCAG00000030765)	ENSCCAG00000036794	SIKE1 (ENSCCAG00000036846)	ENSCCAG00000026846	SYCP1 (ENSCCAG00000034214)	TSHB (ENSCCAG00000029875)	TSPAN2 (ENSCCAG00000035942)	NGF (ENSCCAG00000020128)	VANGL1 (ENSCCAG00000032113)	CASQ2 (ENSCCAG00000012372) #16	NHLH2 (ENSCCAG00000017644) #18	SLC22A15 (ENSCCAG00000030828) #19	MAB21L3 (ENSCCAG00000018744) #20	ATP1A1 (ENSCCAG00000036026) #22	CD58 (ENSCCAG00000024820)	IGSF3 (ENSCCAG00000035554) #23	CD2 (ENSCCAG00000036008) #24	ENSCCAG00000037368	PTGFRN (ENSCCAG00000034342) #25	CD101 (ENSCCAG00000037110) #26	TTF2 (ENSCCAG00000032675) #27	TRIM45 (ENSCCAG00000010371) #28	VTCN1 (ENSCCAG00000037336) #29	MAN1A2 (ENSCCAG00000034354) #30	TENT5C (ENSCCAG00000020387) #31	GDAP2 (ENSCCAG00000024697)	WDR3 (ENSCCAG00000037237)	ENSCCAG00000035368	SPAG17 (ENSCCAG00000023412)
Bolivian squirrel monkey	MODERN SPECIES	98	BCAS2 (ENSSBOG00000027778)	DENND2C (ENSSBOG00000030035)	AMPD1 (ENSSBOG00000028352)	NRAS (ENSSBOG00000021039)	CSDE1 (ENSSBOG00000035592)	SIKE1 (ENSSBOG00000021497)	SYCP1 (ENSSBOG00000024910)	TSHB (ENSSBOG00000035791)	TSPAN2 (ENSSBOG00000002008)	NGF (ENSSBOG00000029889)	VANGL1 (ENSSBOG00000032697)	CASQ2 (ENSSBOG00000003704) #16	NHLH2 (ENSSBOG00000014733) #18	SLC22A15 (ENSSBOG00000031792) #19	MAB21L3 (ENSSBOG00000035896) #20	ATP1A1 (ENSSBOG00000020417) #22	ENSSBOG00000015813	CD58 (ENSSBOG00000032505)	ENSSBOG00000022544	IGSF3 (ENSSBOG00000024073) #23	CD2 (ENSSBOG00000022804) #24	ENSSBOG00000027638	PTGFRN (ENSSBOG00000020242) #25	ENSSBOG00000020480	CD101 (ENSSBOG00000024092) #26	TTF2 (ENSSBOG00000022555) #27	TRIM45 (ENSSBOG00000033971) #28	VTCN1 (ENSSBOG00000025248) #29	MAN1A2 (ENSSBOG00000027903) #30	TENT5C (ENSSBOG00000019248) #31	GDAP2 (ENSSBOG00000029276)
Marmoset	MODERN SPECIES	19	AMPD1 (ENSCJAG00000012494)	NRAS (ENSCJAG00000036517)	CSDE1 (ENSCJAG00000012565)	SIKE1 (ENSCJAG00000012663)	SYCP1 (ENSCJAG00000012678)	TSPAN2 (ENSCJAG00000046657)	TSHB (ENSCJAG00000059226)	NGF (ENSCJAG00000070914)	VANGL1 (ENSCJAG00000012756)	CASQ2 (ENSCJAG00000012776) #16	NHLH2 (ENSCJAG00000079748) #18	SLC22A15 (ENSCJAG00000012813) #19	MAB21L3 (ENSCJAG00000006194) #20	ENSCJAG00000075676	ENSCJAG00000071068	ATP1A1 (ENSCJAG00000006058) #22	ENSCJAG00000071790	ENSCJAG00000006049	IGSF3 (ENSCJAG00000006006) #23	CD2 (ENSCJAG00000062649) #24	PTGFRN (ENSCJAG00000005961) #25	CD101 (ENSCJAG00000005944) #26	TTF2 (ENSCJAG00000005909) #27	TRIM45 (ENSCJAG00000005897) #28	VTCN1 (ENSCJAG00000005878) #29	ENSCJAG00000074653	MAN1A2 (ENSCJAG00000005860) #30	TENT5C (ENSCJAG00000039217) #31	GDAP2 (ENSCJAG00000005808)	WDR3 (ENSCJAG00000005749)	SPAG17 (ENSCJAG00000076495)
Mas night monkey	MODERN SPECIES	775										CTTNBP2NL (ENSANAG00000024298)	VANGL1 (ENSANAG00000031103)	CASQ2 (ENSANAG00000024042) #16	NHLH2 (ENSANAG00000019186) #18	SLC22A15 (ENSANAG00000034011) #19	MAB21L3 (ENSANAG00000033656) #20	ATP1A1 (ENSANAG00000033098) #22	CD58 (ENSANAG00000024219)	IGSF3 (ENSANAG00000034335) #23	CD2 (ENSANAG00000035044) #24	PTGFRN (ENSANAG00000034823) #25	ENSANAG00000029336	CD101 (ENSANAG00000034882) #26	TTF2 (ENSANAG00000020654) #27	TRIM45 (ENSANAG00000020776) #28	VTCN1 (ENSANAG00000034173) #29	MAN1A2 (ENSANAG00000025558) #30	TENT5C (ENSANAG00000020216) #31	GDAP2 (ENSANAG00000019806)	WDR3 (ENSANAG00000033348)	SPAG17 (ENSANAG00000023109)	TBX15 (ENSANAG00000031356)
Tarsier	MODERN SPECIES	7147															CLEC2L (ENSTSYG00000028144)	ATP1A1 (ENSTSYG00000001244) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Lemuriformes	ANCESTRAL SPECIES		ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Mouse lemur	MODERN SPECIES	11	FCER1G (ENSMICG00000007278)	ENSMICG00000035930	TOMM40L (ENSMICG00000007287)	NR1I3 (ENSMICG00000007296)	PCP4L1 (ENSMICG00000036221)	MPZ (ENSMICG00000007313)	SDHC (ENSMICG00000007317)	CFAP126 (ENSMICG00000045246)	ENSMICG00000014956	ENSMICG00000030823	VANGL1 (ENSMICG00000002838)	CASQ2 (ENSMICG00000002848) #16	NHLH2 (ENSMICG00000045301) #18	SLC22A15 (ENSMICG00000009801) #19	MAB21L3 (ENSMICG00000032799) #20	ATP1A1 (ENSMICG00000011083) #22	ENSMICG00000042187	CD58 (ENSMICG00000042112)	IGSF3 (ENSMICG00000016709) #23	CD2 (ENSMICG00000011899) #24	PTGFRN (ENSMICG00000009691) #25	CD101 (ENSMICG00000009704) #26	ENSMICG00000009715	TRIM45 (ENSMICG00000009751) #28	VTCN1 (ENSMICG00000009755) #29	ENSMICG00000009764 #30	TENT5C (ENSMICG00000001773) #31	GDAP2 (ENSMICG00000001775)	WDR3 (ENSMICG00000001783)	SPAG17 (ENSMICG00000001795)	TBX15 (ENSMICG00000048122)
Lemuriformes_a	ANCESTRAL SPECIES	31	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Coquerels sifaka	MODERN SPECIES	749													NHLH2 (ENSPCOG00000025921) #18	SLC22A15 (ENSPCOG00000005315) #19	MAB21L3 (ENSPCOG00000018329) #20	ATP1A1 (ENSPCOG00000017672) #22	ENSPCOG00000013877	IGSF3 (ENSPCOG00000017111) #23	CD2 (ENSPCOG00000014420) #24	PTGFRN (ENSPCOG00000013705) #25	CD101 (ENSPCOG00000016049) #26
Greater bamboo lemur	MODERN SPECIES	511	BCAS2 (ENSPSMG00000013954)	DENND2C (ENSPSMG00000013999)	AMPD1 (ENSPSMG00000014033)	NRAS (ENSPSMG00000014097)	CSDE1 (ENSPSMG00000014304)	SIKE1 (ENSPSMG00000014489)	SYCP1 (ENSPSMG00000014676)	TSHB (ENSPSMG00000014734)	TSPAN2 (ENSPSMG00000014758)	NGF (ENSPSMG00000014770)	VANGL1 (ENSPSMG00000014794)	CASQ2 (ENSPSMG00000014811) #16	NHLH2 (ENSPSMG00000014821) #18	SLC22A15 (ENSPSMG00000014868) #19	MAB21L3 (ENSPSMG00000014900) #20	ATP1A1 (ENSPSMG00000015000) #22	CD58 (ENSPSMG00000015016)	IGSF3 (ENSPSMG00000015029) #23	CD2 (ENSPSMG00000015045) #24	PTGFRN (ENSPSMG00000015068) #25	CD101 (ENSPSMG00000015090) #26	TTF2 (ENSPSMG00000015117) #27	TRIM45 (ENSPSMG00000015160) #28	VTCN1 (ENSPSMG00000015204) #29	MAN1A2 (ENSPSMG00000015225) #30	ENSPSMG00000015236	TENT5C (ENSPSMG00000015247) #31	GDAP2 (ENSPSMG00000015264)	WDR3 (ENSPSMG00000015414)	SPAG17 (ENSPSMG00000015573)	TBX15 (ENSPSMG00000015582)
Bushbaby	MODERN SPECIES	188	AMPD1 (ENSOGAG00000012124)	NRAS (ENSOGAG00000028680)	CSDE1 (ENSOGAG00000012127)	SIKE1 (ENSOGAG00000005952)	ENSOGAG00000026550	ENSOGAG00000030317	SYCP1 (ENSOGAG00000000392)	TSHB (ENSOGAG00000001448)	TSPAN2 (ENSOGAG00000011521)	NGF (ENSOGAG00000026573)	VANGL1 (ENSOGAG00000014403)	CASQ2 (ENSOGAG00000014407) #16	NHLH2 (ENSOGAG00000034540) #18	SLC22A15 (ENSOGAG00000002894) #19	MAB21L3 (ENSOGAG00000002896) #20	ATP1A1 (ENSOGAG00000000187) #22	ENSOGAG00000002250	IGSF3 (ENSOGAG00000017055) #23	CD2 (ENSOGAG00000031305) #24	PTGFRN (ENSOGAG00000005271) #25	CD101 (ENSOGAG00000005273) #26	TTF2 (ENSOGAG00000009039) #27	TRIM45 (ENSOGAG00000006634) #28	VTCN1 (ENSOGAG00000006636) #29	MAN1A2 (ENSOGAG00000003687) #30	ENSOGAG00000028154	TENT5C (ENSOGAG00000033246) #31	GDAP2 (ENSOGAG00000007395)	WDR3 (ENSOGAG00000007399)	SPAG17 (ENSOGAG00000007408)	TBX15 (ENSOGAG00000007282)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a	ENSGT00940000159013
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154840.b #22
Hedgehog	MODERN SPECIES	5565															ENSEEUG00000003265	ATP1A1 (ENSEEUG00000003276) #22
Common shrew	MODERN SPECIES	11433																ATP1A1 (ENSSARG00000004972) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a.j	ENSGT00940000159013
Artiodactyla	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Suina	ANCESTRAL SPECIES	32	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Pig	MODERN SPECIES	12	DENND2C (ENSSSCG00000006755)	AMPD1 (ENSSSCG00000006754)	NRAS (ENSSSCG00000032477)	CSDE1 (ENSSSCG00000006752)	SIKE1 (ENSSSCG00000006751)	SYCP1 (ENSSSCG00000006750)	TSHB (ENSSSCG00000006749)	TSPAN2 (ENSSSCG00000006748)	NGF (ENSSSCG00000032417)	ENSSSCG00000042421	VANGL1 (ENSSSCG00000006746)	CASQ2 (ENSSSCG00000061647) #16	NHLH2 (ENSSSCG00000006744) #18	SLC22A15 (ENSSSCG00000006743) #19	MAB21L3 (ENSSSCG00000006742) #20	ATP1A1 (ENSSSCG00000006740) #22	ENSSSCG00000040692	CD58 (ENSSSCG00000006738)	IGSF3 (ENSSSCG00000006737) #23	CD2 (ENSSSCG00000006736) #24	PTGFRN (ENSSSCG00000006735) #25	CD101 (ENSSSCG00000006734) #26	TTF2 (ENSSSCG00000006733) #27	TRIM45 (ENSSSCG00000006732) #28	ENSSSCG00000044178	VTCN1 (ENSSSCG00000006731) #29	MAN1A2 (ENSSSCG00000006730) #30	TENT5C (ENSSSCG00000006729) #31	ENSSSCG00000040549	GDAP2 (ENSSSCG00000006728)	WDR3 (ENSSSCG00000006727)
Chacoan peccary	MODERN SPECIES	29	TIMM8B (ENSCWAG00000003395)	SDHD (ENSCWAG00000003372)	IL18 (ENSCWAG00000003351)	TEX12 (ENSCWAG00000003333)	BCO2 (ENSCWAG00000003115)	ENSCWAG00000003073	ENSCWAG00000003060	TSHB (ENSCWAG00000003050)	TSPAN2 (ENSCWAG00000003035)	NGF (ENSCWAG00000003021)	VANGL1 (ENSCWAG00000002974)	CASQ2 (ENSCWAG00000002945) #16	NHLH2 (ENSCWAG00000002933) #18	SLC22A15 (ENSCWAG00000002907) #19	MAB21L3 (ENSCWAG00000002889) #20	ATP1A1 (ENSCWAG00000002813) #22	ENSCWAG00000002786	IGSF3 (ENSCWAG00000002762) #23	ENSCWAG00000002742	PTGFRN (ENSCWAG00000002730) #25	CD101 (ENSCWAG00000002714) #26	TTF2 (ENSCWAG00000002699) #27	TRIM45 (ENSCWAG00000002677) #28	VTCN1 (ENSCWAG00000002628) #29	MAN1A2 (ENSCWAG00000002585) #30	TENT5C (ENSCWAG00000002576) #31	GDAP2 (ENSCWAG00000002542)	WDR3 (ENSCWAG00000002500)	SPAG17 (ENSCWAG00000002431)	TBX15 (ENSCWAG00000002391)	WARS2 (ENSCWAG00000002377)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Cetacea	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00950000183109.c.a.a.n	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Odontoceti	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00950000183109.c.a.a.n	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000153503.a.b.w.b	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00950000183109.c.a.a.m.b	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000153503.a.b.w.b	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00950000183109.c.a.a.m.b.c	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Narwhal	MODERN SPECIES	304	DENND2C (ENSMMNG00015015542)	AMPD1 (ENSMMNG00015015503)	NRAS (ENSMMNG00015015474)	CSDE1 (ENSMMNG00015015367)	SIKE1 (ENSMMNG00015015257)	ENSMMNG00015004059	SYCP1 (ENSMMNG00015003966)	TSHB (ENSMMNG00015003906)	TSPAN2 (ENSMMNG00015003882)	NGF (ENSMMNG00015003864)	VANGL1 (ENSMMNG00015003837)	CASQ2 (ENSMMNG00015003803) #16	NHLH2 (ENSMMNG00015003773) #18	SLC22A15 (ENSMMNG00015003758) #19	MAB21L3 (ENSMMNG00015003735) #20	ATP1A1 (ENSMMNG00015003636) #22	ENSMMNG00015003565	IGSF3 (ENSMMNG00015003523) #23	CD2 (ENSMMNG00015003495) #24	ENSMMNG00015003481	ENSMMNG00015003468	PTGFRN (ENSMMNG00015003441) #25	CD101 (ENSMMNG00015003430) #26	ENSMMNG00015003412	TTF2 (ENSMMNG00015003336) #27	TRIM45 (ENSMMNG00015003284) #28	VTCN1 (ENSMMNG00015003230) #29	MAN1A2 (ENSMMNG00015003175) #30	TENT5C (ENSMMNG00015003165) #31	GDAP2 (ENSMMNG00015003116)	WDR3 (ENSMMNG00015003055)
Beluga whale	MODERN SPECIES	74	DENND2C (ENSDLEG00000016190)	AMPD1 (ENSDLEG00000016228)	NRAS (ENSDLEG00000016286)	CSDE1 (ENSDLEG00000016299)	SIKE1 (ENSDLEG00000016348)	ENSDLEG00000016361	SYCP1 (ENSDLEG00000016413)	TSHB (ENSDLEG00000016555)	TSPAN2 (ENSDLEG00000016564)	NGF (ENSDLEG00000016573)	VANGL1 (ENSDLEG00000016587)	CASQ2 (ENSDLEG00000016613) #16	NHLH2 (ENSDLEG00000016681) #18	SLC22A15 (ENSDLEG00000016683) #19	MAB21L3 (ENSDLEG00000016704) #20	ATP1A1 (ENSDLEG00000016719) #22	CD58 (ENSDLEG00000016764)	IGSF3 (ENSDLEG00000016776) #23	CD2 (ENSDLEG00000016800) #24	ENSDLEG00000016812	PTGFRN (ENSDLEG00000016825) #25	CD101 (ENSDLEG00000016843) #26	ENSDLEG00000016876	TTF2 (ENSDLEG00000016896) #27	TRIM45 (ENSDLEG00000016923) #28	MAN1A2 (ENSDLEG00000007933) #30	FAM46C (ENSDLEG00000007955) #31	GDAP2 (ENSDLEG00000007964)	WDR3 (ENSDLEG00000007988)	SPAG17 (ENSDLEG00000008058)	TBX15 (ENSDLEG00000008335)
Vaquita	MODERN SPECIES		NRAS (ENSPSNG00000002442)	CSDE1 (ENSPSNG00000002494)	SIKE1 (ENSPSNG00000002576)	ENSPSNG00000002610	SYCP1 (ENSPSNG00000002726)	TSHB (ENSPSNG00000002854)	TSPAN2 (ENSPSNG00000002875)	ENSPSNG00000002914	NGF (ENSPSNG00000002934)	VANGL1 (ENSPSNG00000002964)	CASQ2 (ENSPSNG00000002987) #16	NHLH2 (ENSPSNG00000003008) #18	ENSPSNG00000003023	SLC22A15 (ENSPSNG00000003035) #19	MAB21L3 (ENSPSNG00000003053) #20	ATP1A1 (ENSPSNG00000003098) #22	ENSPSNG00000003168	IGSF3 (ENSPSNG00000003204) #23	CD2 (ENSPSNG00000003248) #24	ENSPSNG00000003272	ENSPSNG00000003280	ENSPSNG00000003294	PTGFRN (ENSPSNG00000003312) #25	CD101 (ENSPSNG00000003355) #26	ENSPSNG00000003381	TTF2 (ENSPSNG00000003422) #27	TRIM45 (ENSPSNG00000003461) #28	VTCN1 (ENSPSNG00000003497) #29	MAN1A2 (ENSPSNG00000003561) #30	TENT5C (ENSPSNG00000003573) #31	GDAP2 (ENSPSNG00000003591)
Dolphin	MODERN SPECIES	1443																ATP1A1 (ENSTTRG00000011557) #22
Sperm whale	MODERN SPECIES	15	SIKE1 (ENSPCTG00005000661)	ENSPCTG00005000647	ENSPCTG00005000637	ENSPCTG00005000620	ENSPCTG00005000610	SYCP1 (ENSPCTG00005000455)	ENSPCTG00005000403	ENSPCTG00005000393	TSHB (ENSPCTG00005000377)	TSPAN2 (ENSPCTG00005000352)	NGF (ENSPCTG00005000314)	VANGL1 (ENSPCTG00005000293)	CASQ2 (ENSPCTG00005000263) #16	NHLH2 (ENSPCTG00005000232) #18	SLC22A15 (ENSPCTG00005018619) #19	ATP1A1 (ENSPCTG00005018474) #22	CD58 (ENSPCTG00005018443)	IGSF3 (ENSPCTG00005018364) #23	CD2 (ENSPCTG00005018150) #24	PTGFRN (ENSPCTG00005018118) #25	CD101 (ENSPCTG00005018027) #26	ENSPCTG00005017986	TTF2 (ENSPCTG00005017917) #27	TRIM45 (ENSPCTG00005017746) #28	VTCN1 (ENSPCTG00005017689) #29	MAN1A2 (ENSPCTG00005017570) #30	TENT5C (ENSPCTG00005017545) #31	GDAP2 (ENSPCTG00005017454)	WDR3 (ENSPCTG00005017311)	SPAG17 (ENSPCTG00005016769)	TBX15 (ENSPCTG00005016688)
Blue whale	MODERN SPECIES		DENND2C (ENSBMSG00010009901)	AMPD1 (ENSBMSG00010009959)	NRAS (ENSBMSG00010000036)	CSDE1 (ENSBMSG00010000067)	SIKE1 (ENSBMSG00010000128)	ENSBMSG00010000161	SYCP1 (ENSBMSG00010000313)	TSHB (ENSBMSG00010000462)	TSPAN2 (ENSBMSG00010000486)	NGF (ENSBMSG00010000509)	VANGL1 (ENSBMSG00010000530)	CASQ2 (ENSBMSG00010000556) #16	NHLH2 (ENSBMSG00010000584) #18	SLC22A15 (ENSBMSG00010000600) #19	MAB21L3 (ENSBMSG00010000624) #20	ATP1A1 (ENSBMSG00010000656) #22	CD58 (ENSBMSG00010000750)	IGSF3 (ENSBMSG00010000848) #23	CD2 (ENSBMSG00010000892) #24	PTGFRN (ENSBMSG00010000912) #25	CD101 (ENSBMSG00010000941) #26	ENSBMSG00010000968	TTF2 (ENSBMSG00010000984) #27	TRIM45 (ENSBMSG00010001017) #28	VTCN1 (ENSBMSG00010001035) #29	MAN1A2 (ENSBMSG00010001075) #30	TENT5C (ENSBMSG00010001103) #31	ENSBMSG00010001110	GDAP2 (ENSBMSG00010001124)	WDR3 (ENSBMSG00010001140)	ENSBMSG00010001169
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000014494.qb	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000014494.pb	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000014494.pb	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Caprinae	ANCESTRAL SPECIES	2	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000155337.g.a	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Rambouillet Sheep	MODERN SPECIES		AMPD1 (ENSOARG00020021414)	NRAS (ENSOARG00020021627)	CSDE1 (ENSOARG00020021728)	SIKE1 (ENSOARG00020022151)	SYCP1 (ENSOARG00020022243)	TSHB (ENSOARG00020022677)	TSPAN2 (ENSOARG00020022702)	NGF (ENSOARG00020022760)	VANGL1 (ENSOARG00020022787)	CASQ2 (ENSOARG00020022877) #16	NHLH2 (ENSOARG00020022935) #18	ENSOARG00020000086	SLC22A15 (ENSOARG00020000158) #19	MAB21L3 (ENSOARG00020000215) #20	ENSOARG00020000242	ATP1A1 (ENSOARG00020000332) #22	ENSOARG00020000728	ENSOARG00020000743	IGSF3 (ENSOARG00020000764) #23	CD2 (ENSOARG00020000791) #24	PTGFRN (ENSOARG00020000811) #25	TTF2 (ENSOARG00020000877) #27	TRIM45 (ENSOARG00020001002) #28	VTCN1 (ENSOARG00020001040) #29	MAN1A2 (ENSOARG00020001101) #30	TENT5C (ENSOARG00020001120) #31	GDAP2 (ENSOARG00020001139)	WDR3 (ENSOARG00020001170)	ENSOARG00020001200	TBX15 (ENSOARG00020001253)	WARS2 (ENSOARG00020001286)
Goat	MODERN SPECIES	22	NRAS (ENSCHIG00000023175)	CSDE1 (ENSCHIG00000017250)	SIKE1 (ENSCHIG00000014644)	SYCP1 (ENSCHIG00000019909)	TSHB (ENSCHIG00000007505)	TSPAN2 (ENSCHIG00000007588)	NGF (ENSCHIG00000007731)	VANGL1 (ENSCHIG00000011522)	CASQ2 (ENSCHIG00000014376) #16	ENSCHIG00000017520	NHLH2 (ENSCHIG00000007315) #18	ENSCHIG00000008508	SLC22A15 (ENSCHIG00000022810) #19	MAB21L3 (ENSCHIG00000019025) #20	ENSCHIG00000005925	ATP1A1 (ENSCHIG00000017191) #22	ENSCHIG00000022779	IGSF3 (ENSCHIG00000003902) #23	CD2 (ENSCHIG00000023355) #24	PTGFRN (ENSCHIG00000017906) #25	CD101 (ENSCHIG00000025123) #26	TTF2 (ENSCHIG00000020785) #27	TRIM45 (ENSCHIG00000018385) #28	ENSCHIG00000007372	VTCN1 (ENSCHIG00000019630) #29	MAN1A2 (ENSCHIG00000013056) #30	TENT5C (ENSCHIG00000005579) #31	GDAP2 (ENSCHIG00000019563)	WDR3 (ENSCHIG00000010490)	SPAG17 (ENSCHIG00000014664)	ENSCHIG00000014484
Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950.g	ENSGT00390000016950.h	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Bos	ANCESTRAL SPECIES		ENSGT00940000158947	ENSGT00390000016950.g	ENSGT00390000016950.h	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Bos_a	ANCESTRAL SPECIES	32	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950.h	ENSGT00390000018003.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Domestic yak	MODERN SPECIES	22	SIKE1 (ENSBGRG00000006884)	ENSBGRG00000006936	SYCP1 (ENSBGRG00000006966)	TSHB (ENSBGRG00000007103)	ENSBGRG00000007154	TSPAN2 (ENSBGRG00000007175)	NGF (ENSBGRG00000007446)	ENSBGRG00000007514	VANGL1 (ENSBGRG00000007582)	CASQ2 (ENSBGRG00000007757) #16	NHLH2 (ENSBGRG00000007908) #18	SLC22A15 (ENSBGRG00000007927) #19	ENSBGRG00000008009	MAB21L3 (ENSBGRG00000008095) #20	ENSBGRG00000008185	ATP1A1 (ENSBGRG00000008222) #22	ENSBGRG00000008748	IGSF3 (ENSBGRG00000008798) #23	ENSBGRG00000008897	ENSBGRG00000008942 #24	PTGFRN (ENSBGRG00000009035) #25	CD101 (ENSBGRG00000009173) #26	TTF2 (ENSBGRG00000009266) #27	TRIM45 (ENSBGRG00000009569) #28	VTCN1 (ENSBGRG00000009691) #29	MAN1A2 (ENSBGRG00000009916) #30	ENSBGRG00000010295	TENT5C (ENSBGRG00000010319) #31	GDAP2 (ENSBGRG00000010327)	WDR3 (ENSBGRG00000010398)	SPAG17 (ENSBGRG00000011326)
Wild yak	MODERN SPECIES	1351																ATP1A1 (ENSBMUG00000016316) #22	ENSBMUG00000016329	IGSF3 (ENSBMUG00000016378) #23	CD2 (ENSBMUG00000016401) #24	PTGFRN (ENSBMUG00000016414) #25	CD101 (ENSBMUG00000016436) #26	TTF2 (ENSBMUG00000016453) #27	TRIM45 (ENSBMUG00000016474) #28	VTCN1 (ENSBMUG00000016517) #29	MAN1A2 (ENSBMUG00000016570) #30	ENSBMUG00000016594
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000158947	ENSGT00390000016950.g	ENSGT00390000018003.a	ENSGT00390000009724.l.w.b.c.a	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000154175.i.b.l.b	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01100000263481.n.a.a.a.a.a.a.a.a.a.b.a.a	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693.a	ENSGT00940000159013	ENSGT00940000153724.A
Hybrid Bos Indicus	MODERN SPECIES	22	CSDE1 (ENSBIXG00005002632)	SIKE1 (ENSBIXG00005020065)	ENSBIXG00005020069	SYCP1 (ENSBIXG00005003311)	TSHB (ENSBIXG00005020177)	TSPAN2 (ENSBIXG00005003349)	NGF (ENSBIXG00005020234)	ENSBIXG00005005532	VANGL1 (ENSBIXG00005020258)	CASQ2 (ENSBIXG00005020297) #16	NHLH2 (ENSBIXG00005020316) #18	ENSBIXG00005020331	SLC22A15 (ENSBIXG00005020361) #19	MAB21L3 (ENSBIXG00005003444) #20	ENSBIXG00005020442	ATP1A1 (ENSBIXG00005020549) #22	ENSBIXG00005003478	ENSBIXG00005020612	IGSF3 (ENSBIXG00005003497) #23	CD2 (ENSBIXG00005020730) #24	PTGFRN (ENSBIXG00005020799) #25	CD101 (ENSBIXG00005005743) #26	TTF2 (ENSBIXG00005020946) #27	TRIM45 (ENSBIXG00005006265) #28	VTCN1 (ENSBIXG00005003569) #29	ENSBIXG00005021170	MAN1A2 (ENSBIXG00005021491) #30	GDAP2 (ENSBIXG00005007307)	WDR3 (ENSBIXG00005003644)	ENSBIXG00005021669	TBX15 (ENSBIXG00005007374)
Cow	MODERN SPECIES	22	NRAS (ENSBTAG00000046797)	CSDE1 (ENSBTAG00000000678)	SIKE1 (ENSBTAG00000015977)	ENSBTAG00000032057	SYCP1 (ENSBTAG00000032071)	TSHB (ENSBTAG00000006295)	TSPAN2 (ENSBTAG00000015961)	NGF (ENSBTAG00000007446)	VANGL1 (ENSBTAG00000005788)	CASQ2 (ENSBTAG00000011500) #16	NHLH2 (ENSBTAG00000015067) #18	ENSBTAG00000051199	SLC22A15 (ENSBTAG00000000664) #19	MAB21L3 (ENSBTAG00000001406) #20	ENSBTAG00000050694	ATP1A1 (ENSBTAG00000001246) #22	CD58 (ENSBTAG00000040131)	IGSF3 (ENSBTAG00000004849) #23	CD2 (ENSBTAG00000017256) #24	PTGFRN (ENSBTAG00000008022) #25	CD101 (ENSBTAG00000018203) #26	TTF2 (ENSBTAG00000015392) #27	TRIM45 (ENSBTAG00000001748) #28	VTCN1 (ENSBTAG00000014466) #29	MAN1A2 (ENSBTAG00000003586) #30	TENT5C (ENSBTAG00000046509) #31	ENSBTAG00000051931	GDAP2 (ENSBTAG00000016387)	WDR3 (ENSBTAG00000019937)	SPAG17 (ENSBTAG00000001080)	ENSBTAG00000048491
American bison	MODERN SPECIES	3366	DENND2C (ENSBBBG00000002113)	AMPD1 (ENSBBBG00000011610)	NRAS (ENSBBBG00000011637)	ENSBBBG00000011846	SIKE1 (ENSBBBG00000011890)	ENSBBBG00000011898	SYCP1 (ENSBBBG00000012065)	TSHB (ENSBBBG00000012103)	TSPAN2 (ENSBBBG00000012145)	NGF (ENSBBBG00000012158)	VANGL1 (ENSBBBG00000012189)	CASQ2 (ENSBBBG00000012205) #16	ENSBBBG00000012213	SLC22A15 (ENSBBBG00000012276) #19	MAB21L3 (ENSBBBG00000002319) #20	ATP1A1 (ENSBBBG00000012376) #22	ENSBBBG00000012393	IGSF3 (ENSBBBG00000012453) #23	CD2 (ENSBBBG00000012471) #24	PTGFRN (ENSBBBG00000002392) #25	CD101 (ENSBBBG00000012530) #26	TTF2 (ENSBBBG00000012568) #27	TRIM45 (ENSBBBG00000012597) #28	VTCN1 (ENSBBBG00000002434) #29	MAN1A2 (ENSBBBG00000012766) #30	TENT5C (ENSBBBG00000007449) #31	GDAP2 (ENSBBBG00000002478)	WDR3 (ENSBBBG00000012825)	SPAG17 (ENSBBBG00000001749)	ENSBBBG00000012856	H2AC25 (ENSBBBG00000002529)
Siberian musk deer	MODERN SPECIES	98	ENSMMSG00000011497	DENND2C (ENSMMSG00000011535)	AMPD1 (ENSMMSG00000011611)	NRAS (ENSMMSG00000011786)	CSDE1 (ENSMMSG00000011841)	SIKE1 (ENSMMSG00000012115)	SYCP1 (ENSMMSG00000012181)	TSHB (ENSMMSG00000012517)	TSPAN2 (ENSMMSG00000012545)	NGF (ENSMMSG00000012583)	VANGL1 (ENSMMSG00000012598)	CASQ2 (ENSMMSG00000012652) #16	NHLH2 (ENSMMSG00000012682) #18	SLC22A15 (ENSMMSG00000012704) #19	MAB21L3 (ENSMMSG00000012783) #20	ATP1A1 (ENSMMSG00000012825) #22	ENSMMSG00000012961	IGSF3 (ENSMMSG00000012976) #23	ENSMMSG00000013017	PTGFRN (ENSMMSG00000013024) #25	CD101 (ENSMMSG00000013054) #26	TTF2 (ENSMMSG00000013101) #27	TRIM45 (ENSMMSG00000013142) #28	VTCN1 (ENSMMSG00000013168) #29	MAN1A2 (ENSMMSG00000013222) #30	ENSMMSG00000013271	TENT5C (ENSMMSG00000013288) #31	GDAP2 (ENSMMSG00000013305)	WDR3 (ENSMMSG00000013356)	SPAG17 (ENSMMSG00000013419)	ENSMMSG00000013577
Yarkand deer	MODERN SPECIES	12	AMPD1 (ENSCHYG00000016598)	NRAS (ENSCHYG00000016503)	CSDE1 (ENSCHYG00000016050)	SIKE1 (ENSCHYG00000015766)	ENSCHYG00000015651	SYCP1 (ENSCHYG00000015396)	TSHB (ENSCHYG00000015320)	TSPAN2 (ENSCHYG00000015066)	NGF (ENSCHYG00000014981)	VANGL1 (ENSCHYG00000014894)	CASQ2 (ENSCHYG00000014814) #16	NHLH2 (ENSCHYG00000014773) #18	ENSCHYG00000014737	ENSCHYG00000014605 #19	MAB21L3 (ENSCHYG00000014551) #20	ATP1A1 (ENSCHYG00000013765) #22	ENSCHYG00000013650	IGSF3 (ENSCHYG00000013489) #23	CD2 (ENSCHYG00000013421) #24	PTGFRN (ENSCHYG00000013321) #25	CD101 (ENSCHYG00000013230) #26	TTF2 (ENSCHYG00000013086) #27	TRIM45 (ENSCHYG00000013005) #28	VTCN1 (ENSCHYG00000012876) #29	ENSCHYG00000012828	MAN1A2 (ENSCHYG00000012603) #30	TENT5C (ENSCHYG00000012566) #31	GDAP2 (ENSCHYG00000012378)	WDR3 (ENSCHYG00000012236)	SPAG17 (ENSCHYG00000012111)	TBX15 (ENSCHYG00000011911)
Camelidae	ANCESTRAL SPECIES	29	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Arabian camel	MODERN SPECIES	35	BCAS2 (ENSCDRG00005005135)	DENND2C (ENSCDRG00005005062)	AMPD1 (ENSCDRG00005004958)	NRAS (ENSCDRG00005004935)	ENSCDRG00005004604	SIKE1 (ENSCDRG00005004534)	ENSCDRG00005004390	SYCP1 (ENSCDRG00005003944)	TSHB (ENSCDRG00005003878)	TSPAN2 (ENSCDRG00005003772)	NGF (ENSCDRG00005003718)	VANGL1 (ENSCDRG00005003686)	CASQ2 (ENSCDRG00005003648) #16	SLC22A15 (ENSCDRG00005003542) #19	MAB21L3 (ENSCDRG00005003501) #20	ATP1A1 (ENSCDRG00005003442) #22	ENSCDRG00005003393	IGSF3 (ENSCDRG00005003359) #23	CD2 (ENSCDRG00005003335) #24	PTGFRN (ENSCDRG00005003307) #25	CD101 (ENSCDRG00005003285) #26	ENSCDRG00005003266	TRIM45 (ENSCDRG00005003250) #28	VTCN1 (ENSCDRG00005003199) #29	MAN1A2 (ENSCDRG00005003168) #30	TENT5C (ENSCDRG00005003158) #31	GDAP2 (ENSCDRG00005003149)	WDR3 (ENSCDRG00005003128)	SPAG17 (ENSCDRG00005003031)	ENSCDRG00005003000	TBX15 (ENSCDRG00005002975)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a.j	ENSGT00940000159013
Carnivora	ANCESTRAL SPECIES	1	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a.j	ENSGT00940000159013
Caniformia	ANCESTRAL SPECIES	2	ENSGT00950000183011.c.a.a	ENSGT00940000158947.g.b	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00950000185047	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00950000185829	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.g.b	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00950000185047	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00950000185829	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Ursidae	ANCESTRAL SPECIES	32	ENSGT00950000183011.c.a.a	ENSGT00940000158947.g.b	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00950000185047	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00950000185829	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Ursus	ANCESTRAL SPECIES	107	ENSGT00940000158947.g.b	ENSGT00390000016950.k.a	ENSGT00390000016950.l	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00950000185047	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT01100000263543.a.j.h.b
American black bear	MODERN SPECIES	7516																ATP1A1 (ENSUAMG00000004877) #22
Polar bear	MODERN SPECIES	209	AMPD1 (ENSUMAG00000011730)	NRAS (ENSUMAG00000011722)	ENSUMAG00000011714	ENSUMAG00000011713	SIKE1 (ENSUMAG00000011701)	ENSUMAG00000011697	ENSUMAG00000011659	SYCP1 (ENSUMAG00000011531)	TSHB (ENSUMAG00000011510)	TSPAN2 (ENSUMAG00000011490)	NGF (ENSUMAG00000011483)	VANGL1 (ENSUMAG00000011478)	CASQ2 (ENSUMAG00000011472) #16	SLC22A15 (ENSUMAG00000011378) #19	MAB21L3 (ENSUMAG00000011357) #20	ATP1A1 (ENSUMAG00000011338) #22	ENSUMAG00000011330
Giant Panda	MODERN SPECIES	11	ENSAMEG00000028734	NRAS (ENSAMEG00000017134)	CSDE1 (ENSAMEG00000017129)	SIKE1 (ENSAMEG00000017123)	ENSAMEG00000026022	ENSAMEG00000017106	SYCP1 (ENSAMEG00000017087)	TSHB (ENSAMEG00000010929)	ENSAMEG00000010910	NGF (ENSAMEG00000030308)	VANGL1 (ENSAMEG00000010898)	CASQ2 (ENSAMEG00000029848) #16	NHLH2 (ENSAMEG00000010851) #18	SLC22A15 (ENSAMEG00000026074) #19	MAB21L3 (ENSAMEG00000005068) #20	ATP1A1 (ENSAMEG00000005071) #22	ENSAMEG00000005165	IGSF3 (ENSAMEG00000005171) #23	ENSAMEG00000005177	PTGFRN (ENSAMEG00000005188) #25	CD101 (ENSAMEG00000005212) #26	ENSAMEG00000005220	TRIM45 (ENSAMEG00000005240) #28	VTCN1 (ENSAMEG00000005256) #29	ENSAMEG00000029843	MAN1A2 (ENSAMEG00000004421) #30	TENT5C (ENSAMEG00000019061) #31	ENSAMEG00000024849	GDAP2 (ENSAMEG00000004394)	WDR3 (ENSAMEG00000004339)	SPAG17 (ENSAMEG00000004302)
Mustelinae	ANCESTRAL SPECIES	47	ENSGT00950000183011.c.a.a	ENSGT00940000158947.g.b	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
American mink	MODERN SPECIES	111	C16orf90 (ENSNVIG00000023393)	CLUAP1 (ENSNVIG00000023394)	NLRC3 (ENSNVIG00000023403)	SLX4 (ENSNVIG00000023409)	TRAP1 (ENSNVIG00000023431)	DNASE1 (ENSNVIG00000023448)	CREBBP (ENSNVIG00000023450)	ADCY9 (ENSNVIG00000023463)	SRL (ENSNVIG00000023467)	TFAP4 (ENSNVIG00000023470)	VANGL1 (ENSNVIG00000023481)	CASQ2 (ENSNVIG00000000050) #16	NHLH2 (ENSNVIG00000000105) #18	SLC22A15 (ENSNVIG00000000113) #19	MAB21L3 (ENSNVIG00000000128) #20	ATP1A1 (ENSNVIG00000000157) #22	ENSNVIG00000000193	IGSF3 (ENSNVIG00000000200) #23	CD2 (ENSNVIG00000000214) #24	PTGFRN (ENSNVIG00000000230) #25	CD101 (ENSNVIG00000000251) #26	TTF2 (ENSNVIG00000000301) #27	TRI45 (ENSNVIG00000000318) #28	VTCN1 (ENSNVIG00000000327) #29	ENSNVIG00000000362	MAN1A2 (ENSNVIG00000000375) #30	TENT5C (ENSNVIG00000000384) #31
Ferret	MODERN SPECIES	323		ENSMPUG00000001750	ENSMPUG00000001742	ENSMPUG00000001740	ENSMPUG00000001725	TSHB (ENSMPUG00000001722)	TSPAN2 (ENSMPUG00000001674)	NGF (ENSMPUG00000019389)	VANGL1 (ENSMPUG00000001670)	CASQ2 (ENSMPUG00000001664) #16	NHLH2 (ENSMPUG00000019387) #18	ENSMPUG00000001661	SLC22A15 (ENSMPUG00000001657) #19	ENSMPUG00000001652	MAB21L3 (ENSMPUG00000001644) #20	ATP1A1 (ENSMPUG00000001638) #22	ENSMPUG00000001632	IGSF3 (ENSMPUG00000001629) #23	CD2 (ENSMPUG00000001627) #24	PTGFRN (ENSMPUG00000001624) #25	CD101 (ENSMPUG00000001621) #26	ENSMPUG00000001606	TRIM45 (ENSMPUG00000001600) #28	VTCN1 (ENSMPUG00000001593) #29	MAN1A2 (ENSMPUG00000001585) #30	TENT5C (ENSMPUG00000001581) #31	GDAP2 (ENSMPUG00000001575)	WDR3 (ENSMPUG00000001565)	SPAG17 (ENSMPUG00000001553)	TBX15 (ENSMPUG00000001549)	WARS2 (ENSMPUG00000001541)
Canidae	ANCESTRAL SPECIES	25	ENSGT00940000158947.g.a	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00390000013931.a.a.a.a	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00950000185047.a.a	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00950000185829	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00950000182967.a.a.a.a.a.a.c.b.a.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00390000013931.a.a.a.a.b	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000169805	ENSGT00940000154334.k #28	ENSGT00950000183010.a.a.a.b.a.a.a.a.a	ENSGT00940000157300 #29	ENSGT00950000185047.a.a	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00950000185829	ENSGT00940000156336	ENSGT00940000153859.a
Dingo	MODERN SPECIES	223	CSDE1 (ENSCAFG00020000481)	SIKE1 (ENSCAFG00020000472)	ENSCAFG00020000466	ENSCAFG00020000446	ENSCAFG00020000163	ENSCAFG00020021008	SYCP1 (ENSCAFG00020020995)	TSHB (ENSCAFG00020020987)	TSPAN2 (ENSCAFG00020020982)	NGF (ENSCAFG00020020970)	VANGL1 (ENSCAFG00020020963)	CASQ2 (ENSCAFG00020020924) #16	NHLH2 (ENSCAFG00020020915) #18	SLC22A15 (ENSCAFG00020020878) #19	MAB21L3 (ENSCAFG00020020870) #20	ATP1A1 (ENSCAFG00020020858) #22	ENSCAFG00020020844	IGSF3 (ENSCAFG00020020808) #23	CD2 (ENSCAFG00020020793) #24	ENSCAFG00020020788	PTGFRN (ENSCAFG00020020784) #25	CD101 (ENSCAFG00020020782) #26	ENSCAFG00020020772	TRIM45 (ENSCAFG00020020769) #28	ENSCAFG00020020767	VTCN1 (ENSCAFG00020020764) #29	ENSCAFG00020020761	MAN1A2 (ENSCAFG00020020664) #30	TENT5C (ENSCAFG00020020652) #31	ENSCAFG00020020651	GDAP2 (ENSCAFG00020020644)
Dog	MODERN SPECIES	8	ENSCAFG00845027157	ENSCAFG00845027184	ENSCAFG00845027218	ENSCAFG00845027397	ENSCAFG00845027680	TSHB (ENSCAFG00845027709)	TSPAN2 (ENSCAFG00845027766)	ENSCAFG00845027829	NGF (ENSCAFG00845027859)	VANGL1 (ENSCAFG00845027910)	CASQ2 (ENSCAFG00845028062) #16	ENSCAFG00845028114 #18	SLC22A15 (ENSCAFG00845028198) #19	MAB21L3 (ENSCAFG00845028265) #20	ENSCAFG00845028320	ATP1A1 (ENSCAFG00845028456) #22	ENSCAFG00845028795	IGSF3 (ENSCAFG00845028936) #23	CD2 (ENSCAFG00845028984) #24	PTGFRN (ENSCAFG00845029002) #25	CD101 (ENSCAFG00845029071) #26	ENSCAFG00845029143	TRIM45 (ENSCAFG00845029248) #28	ENSCAFG00845029291	VTCN1 (ENSCAFG00845029358) #29	ENSCAFG00845029463	MAN1A2 (ENSCAFG00845029509) #30	TENT5C (ENSCAFG00845005783) #31	GDAP2 (ENSCAFG00845005877)	WDR3 (ENSCAFG00845005942)	SPAG17 (ENSCAFG00845005984)
Red fox	MODERN SPECIES	16	ENSVVUG00000009910	ENSVVUG00000009922	SYCP1 (ENSVVUG00000009950)	ENSVVUG00000010223	ENSVVUG00000010227	TSHB (ENSVVUG00000010234)	TSPAN2 (ENSVVUG00000010237)	VANGL1 (ENSVVUG00000010259)	CASQ2 (ENSVVUG00000010295) #16	NHLH2 (ENSVVUG00000010299) #18	ENSVVUG00000010302 #19	ENSVVUG00000010311	ENSVVUG00000010324 #19	MAB21L3 (ENSVVUG00000010333) #20	ENSVVUG00000010336	ATP1A1 (ENSVVUG00000010340) #22	CD58 (ENSVVUG00000010356)	IGSF3 (ENSVVUG00000010362) #23	CD2 (ENSVVUG00000010381) #24	PTGFRN (ENSVVUG00000010390) #25	CD101 (ENSVVUG00000010401) #26	TTF2 (ENSVVUG00000010407)	TRIM45 (ENSVVUG00000010421) #28	VTCN1 (ENSVVUG00000010432) #29	ENSVVUG00000010433	MAN1A2 (ENSVVUG00000010442) #30	TENT5C (ENSVVUG00000010460) #31	ENSVVUG00000010463	GDAP2 (ENSVVUG00000010473)	WDR3 (ENSVVUG00000010629)	SPAG17 (ENSVVUG00000010690)
Felidae	ANCESTRAL SPECIES	10	ENSGT00950000183011.c.a.a	ENSGT00940000158947.e	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Panthera	ANCESTRAL SPECIES	4	ENSGT00950000183011.c.a.a	ENSGT00940000158947.e	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000158947.e	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000154158.l.c.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.b.a	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000164746	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
lion	MODERN SPECIES	8	NRAS (ENSPLOG00000016315)	CSDE1 (ENSPLOG00000015680)	SIKE1 (ENSPLOG00000015473)	ENSPLOG00000015461	ENSPLOG00000015234	SYCP1 (ENSPLOG00000014657)	TSHB (ENSPLOG00000014568)	TSPAN2 (ENSPLOG00000014519)	ENSPLOG00000014415	NGF (ENSPLOG00000014389)	VANGL1 (ENSPLOG00000014377)	CASQ2 (ENSPLOG00000014262) #16	NHLH2 (ENSPLOG00000014240) #18	SLC22A15 (ENSPLOG00000014089) #19	MAB21L3 (ENSPLOG00000014017) #20	ATP1A1 (ENSPLOG00000013723) #22	ENSPLOG00000013611	IGSF3 (ENSPLOG00000013549) #23	CD2 (ENSPLOG00000013510) #24	PTGFRN (ENSPLOG00000013463) #25	CD101 (ENSPLOG00000013429) #26	ENSPLOG00000013203	TRIM45 (ENSPLOG00000013060) #28	VTCN1 (ENSPLOG00000012889) #29	MAN1A2 (ENSPLOG00000012755) #30	TENT5C (ENSPLOG00000012735) #31	ENSPLOG00000012701	GDAP2 (ENSPLOG00000012658)	WDR3 (ENSPLOG00000012483)	SPAG17 (ENSPLOG00000012093)	TBX15 (ENSPLOG00000011860)
leopard	MODERN SPECIES	31	ENSPPRG00000007102	CSDE1 (ENSPPRG00000006747)	SIKE1 (ENSPPRG00000001473)	ENSPPRG00000001280	ENSPPRG00000000888	SYCP1 (ENSPPRG00000023786)	TSHB (ENSPPRG00000012835)	TSPAN2 (ENSPPRG00000012267)	ENSPPRG00000016776	NGF (ENSPPRG00000016689)	VANGL1 (ENSPPRG00000010871)	CASQ2 (ENSPPRG00000009697) #16	NHLH2 (ENSPPRG00000016591) #18	SLC22A15 (ENSPPRG00000008983) #19	MAB21L3 (ENSPPRG00000008518) #20	ATP1A1 (ENSPPRG00000008177) #22	IGSF3 (ENSPPRG00000004364) #23	CD2 (ENSPPRG00000003530) #24	PTGFRN (ENSPPRG00000003305) #25	CD101 (ENSPPRG00000003135) #26	ENSPPRG00000002352	TRIM45 (ENSPPRG00000001987) #28	VTCN1 (ENSPPRG00000001120) #29	MAN1A2 (ENSPPRG00000000605) #30	TENT5C (ENSPPRG00000016270) #31	GDAP2 (ENSPPRG00000000210)	WDR3 (ENSPPRG00000022972)	SPAG17 (ENSPPRG00000023948)	TBX15 (ENSPPRG00000020309)	WARS2 (ENSPPRG00000017754)	HAO2 (ENSPPRG00000016364)
Tiger	MODERN SPECIES	20												VANGL1 (ENSPTIG00000015471)	CASQ2 (ENSPTIG00000014576) #16	SLC22A15 (ENSPTIG00000013213) #19	MAB21L3 (ENSPTIG00000011945) #20	ATP1A1 (ENSPTIG00000020868) #22	IGSF3 (ENSPTIG00000018398) #23	SDK2 (ENSPTIG00000015074)	CPSF4L (ENSPTIG00000012676)	C17orf80 (ENSPTIG00000008684)	ENSPTIG00000006569	COG1 (ENSPTIG00000005027)	SSTR2 (ENSPTIG00000006667)	SLC39A11 (ENSPTIG00000000090)	ENSPTIG00000006657	ENSPTIG00000019658	KCNJ2 (ENSPTIG00000006640)	KCNJ16 (ENSPTIG00000006633)	MAP2K6 (ENSPTIG00000017793)	ABCA5 (ENSPTIG00000016901)	ABCA10 (ENSPTIG00000013922)
Cat	MODERN SPECIES	239	AMPD1 (ENSFCAG00000010509)	NRAS (ENSFCAG00000037994)	CSDE1 (ENSFCAG00000029266)	SIKE1 (ENSFCAG00000031592)	ENSFCAG00000041311	ENSFCAG00000028538	SYCP1 (ENSFCAG00000023028)	TSHB (ENSFCAG00000010405)	TSPAN2 (ENSFCAG00000029385)	NGF (ENSFCAG00000045820)	VANGL1 (ENSFCAG00000010493)	CASQ2 (ENSFCAG00000025977) #16	NHLH2 (ENSFCAG00000028313) #18	SLC22A15 (ENSFCAG00000022423) #19	MAB21L3 (ENSFCAG00000031670) #20	ATP1A1 (ENSFCAG00000013378) #22	CD58 (ENSFCAG00000025590)	IGSF3 (ENSFCAG00000011343) #23	CD2 (ENSFCAG00000001976) #24	PTGFRN (ENSFCAG00000001977) #25	ENSFCAG00000051359	CD101 (ENSFCAG00000001979) #26	TTF2 (ENSFCAG00000001981) #27	TRIM45 (ENSFCAG00000005204) #28	VTCN1 (ENSFCAG00000009689) #29	MAN1A2 (ENSFCAG00000019000) #30	TENT5C (ENSFCAG00000022444) #31	GDAP2 (ENSFCAG00000003468)	WDR3 (ENSFCAG00000003469)	ENSFCAG00000011531	TBX15 (ENSFCAG00000043861)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Equus	ANCESTRAL SPECIES	3	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000165376	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Donkey	MODERN SPECIES	7	DENND2C (ENSEASG00005006273)	AMPD1 (ENSEASG00005006275)	NRAS (ENSEASG00005006279)	CSDE1 (ENSEASG00005006284)	SIKE1 (ENSEASG00005034759)	ENSEASG00005006296	SYCP1 (ENSEASG00005006304)	TSHB (ENSEASG00005006325)	TSPAN2 (ENSEASG00005006328)	NGF (ENSEASG00005006332)	VANGL1 (ENSEASG00005006335)	CASQ2 (ENSEASG00005006338) #16	NHLH2 (ENSEASG00005031693) #18	SLC22A15 (ENSEASG00005006345) #19	MAB21L3 (ENSEASG00005006347) #20	ATP1A1 (ENSEASG00005006353) #22	ENSEASG00005006357	IGSF3 (ENSEASG00005006358) #23	CD2 (ENSEASG00005006361) #24	PTGFRN (ENSEASG00005006364) #25	CD101 (ENSEASG00005006367) #26	ENSEASG00005006374	TRIM45 (ENSEASG00005006386) #28	VTCN1 (ENSEASG00005006388) #29	MAN1A2 (ENSEASG00005006389) #30	TENT5C (ENSEASG00005033293) #31	GDAP2 (ENSEASG00005006392)	WDR3 (ENSEASG00005006393)	SPAG17 (ENSEASG00005024790)	TBX15 (ENSEASG00005006401)	WARS2 (ENSEASG00005024683)
Horse	MODERN SPECIES	26	DENND2C (ENSECAG00000019594)	AMPD1 (ENSECAG00000014907)	NRAS (ENSECAG00000013942)	CSDE1 (ENSECAG00000020885)	SIKE1 (ENSECAG00000019395)	ENSECAG00000015617	SYCP1 (ENSECAG00000013010)	TSHB (ENSECAG00000045218)	TSPAN2 (ENSECAG00000010966)	NGF (ENSECAG00000010553)	VANGL1 (ENSECAG00000008137)	CASQ2 (ENSECAG00000021854) #16	NHLH2 (ENSECAG00000030954) #18	SLC22A15 (ENSECAG00000020117) #19	MAB21L3 (ENSECAG00000019090) #20	ATP1A1 (ENSECAG00000024623) #22	ENSECAG00000056436	ENSECAG00000057106	CD2 (ENSECAG00000019437) #24	IGSF3 (ENSECAG00000022378) #23	PTGFRN (ENSECAG00000017101) #25	CD101 (ENSECAG00000017048) #26	TTF2 (ENSECAG00000012474)	TRIM45 (ENSECAG00000010259) #28	VTCN1 (ENSECAG00000008749) #29	MAN1A2 (ENSECAG00000019681) #30	TENT5C (ENSECAG00000019626) #31	GDAP2 (ENSECAG00000014270)	WDR3 (ENSECAG00000006575)	SPAG17 (ENSECAG00000024156)	TBX15 (ENSECAG00000023325)
Chiroptera	ANCESTRAL SPECIES	38	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Megabat	MODERN SPECIES	1803																ATP1A1 (ENSPVAG00000006284) #22	ENSPVAG00000006286	IGSF3 (ENSPVAG00000006287) #23	ENSPVAG00000006289	CD2 (ENSPVAG00000006290) #24
Microchiroptera	ANCESTRAL SPECIES	35	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Greater horseshoe bat	MODERN SPECIES	14	DENND2C (ENSRFEG00010015796)	AMPD1 (ENSRFEG00010015922)	NRAS (ENSRFEG00010015972)	CSDE1 (ENSRFEG00010016045)	SIKE1 (ENSRFEG00010016146)	ENSRFEG00010016255	SYCP1 (ENSRFEG00010016297)	TSHB (ENSRFEG00010017176)	TSPAN2 (ENSRFEG00010017235)	NGF (ENSRFEG00010017324)	VANGL1 (ENSRFEG00010017347)	CASQ2 (ENSRFEG00010017384) #16	NHLH2 (ENSRFEG00010017414) #18	SLC22A15 (ENSRFEG00010017434) #19	MAB21L3 (ENSRFEG00010017519) #20	ATP1A1 (ENSRFEG00010017578) #22	ENSRFEG00010017926	IGSF3 (ENSRFEG00010017979) #23	CD2 (ENSRFEG00010018050) #24	PTGFRN (ENSRFEG00010018081) #25	CD101 (ENSRFEG00010018120) #26	ENSRFEG00010018150	ENSRFEG00010018175	TRIM45 (ENSRFEG00010018200) #28	VTCN1 (ENSRFEG00010018302) #29	MAN1A2 (ENSRFEG00010018506) #30	TENT5C (ENSRFEG00010018543) #31	GDAP2 (ENSRFEG00010018562)	WDR3 (ENSRFEG00010018610)	SPAG17 (ENSRFEG00010018691)	TBX15 (ENSRFEG00010019084)
Microbat	MODERN SPECIES	1140																ATP1A1 (ENSMLUG00000005048) #22	ENSMLUG00000022981	IGSF3 (ENSMLUG00000003182) #23	ENSMLUG00000003193	PTGFRN (ENSMLUG00000007160) #25	CD101 (ENSMLUG00000007176) #26	TTF2 (ENSMLUG00000013908) #27	TRIM45 (ENSMLUG00000013923) #28	VTCN1 (ENSMLUG00000013927) #29	MAN1A2 (ENSMLUG00000014231) #30	TENT5C (ENSMLUG00000014236) #31	GDAP2 (ENSMLUG00000003494)	WDR3 (ENSMLUG00000003500)	PDE4DIP (ENSMLUG00000012437)	SEC22B (ENSMLUG00000025411)	NOTCH2 (ENSMLUG00000003023)
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Xenarthra	ANCESTRAL SPECIES	1698															ENSGT01050000244827.B #20	ENSGT00940000154840.b #22
Sloth	MODERN SPECIES	4964																ATP1A1 (ENSCHOG00000007807) #22
Armadillo	MODERN SPECIES	3822													SLC22A15 (ENSDNOG00000016384) #19	ENSDNOG00000045952	MAB21L3 (ENSDNOG00000016388) #20	ATP1A1 (ENSDNOG00000010484) #22
Afrotheria	ANCESTRAL SPECIES	31	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Afrotheria_a	ANCESTRAL SPECIES	31	ENSGT00390000014494	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000155177.b #23	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Elephant	MODERN SPECIES	26	AMPD1 (ENSLAFG00000007144)	NRAS (ENSLAFG00000020706)	CSDE1 (ENSLAFG00000007150)	SIKE1 (ENSLAFG00000010502)	ENSLAFG00000028744	ENSLAFG00000030508	TSHB (ENSLAFG00000030671)	TSPAN2 (ENSLAFG00000006453)	NGF (ENSLAFG00000028282)	ENSLAFG00000022285	VANGL1 (ENSLAFG00000003272)	CASQ2 (ENSLAFG00000003274) #16	NHLH2 (ENSLAFG00000007456) #18	SLC22A15 (ENSLAFG00000004144) #19	MAB21L3 (ENSLAFG00000023352) #20	ATP1A1 (ENSLAFG00000015690) #22	IGSF3 (ENSLAFG00000000958) #23	CD2 (ENSLAFG00000014389) #24	PTGFRN (ENSLAFG00000005517) #25	CD101 (ENSLAFG00000005521) #26	ENSLAFG00000006808 #27	TRIM45 (ENSLAFG00000005156) #28	VTCN1 (ENSLAFG00000006818) #29	MAN1A2 (ENSLAFG00000017263) #30	TENT5C (ENSLAFG00000014696) #31	GDAP2 (ENSLAFG00000012098)	WDR3 (ENSLAFG00000012108)	SPAG17 (ENSLAFG00000012115)	TBX15 (ENSLAFG00000018452)	WARS2 (ENSLAFG00000018455)	HAO2 (ENSLAFG00000010622)
Hyrax	MODERN SPECIES	4595																ATP1A1 (ENSPCAG00000000041) #22
Tenrec	MODERN SPECIES	5407															ENSETEG00000007272	ATP1A1 (ENSETEG00000007276) #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.x	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT00960000186961	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Opossum	MODERN SPECIES	1	AMPD1 (ENSMODG00000004578)	NRAS (ENSMODG00000004590)	CSDE1 (ENSMODG00000004685)	SIKE1 (ENSMODG00000004700)	ENSMODG00000004721	SYCP1 (ENSMODG00000004800)	TSHB (ENSMODG00000004806)	TSPAN2 (ENSMODG00000004828)	ENSMODG00000004846	NGF (ENSMODG00000004863)	ENSMODG00000023229	CASQ2 (ENSMODG00000004914) #16	NHLH2 (ENSMODG00000023228) #18	SLC22A15 (ENSMODG00000004931) #19	MAB21L3 (ENSMODG00000004947) #20	ATP1A1 (ENSMODG00000005035) #22	ENSMODG00000039584	IGSF3 (ENSMODG00000005063) #23	ENSMODG00000005074	PTGFRN (ENSMODG00000005096) #25	CD101 (ENSMODG00000005103) #26	TTF2 (ENSMODG00000005145) #27	TRIM45 (ENSMODG00000005160) #28	VTCN1 (ENSMODG00000047962) #29	MAN1A2 (ENSMODG00000005193) #30	TENT5C (ENSMODG00000023227) #31	GDAP2 (ENSMODG00000005215)	ENSMODG00000042799	ENSMODG00000028610	WDR3 (ENSMODG00000005243)	SPAG17 (ENSMODG00000005306)
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.x	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT00960000186961	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Tasmanian devil	MODERN SPECIES	3	CSDE1 (ENSSHAG00000009831)	AMPD1 (ENSSHAG00000009444)	SIKE1 (ENSSHAG00000026566)	ENSSHAG00000010518	SYCP1 (ENSSHAG00000010670)	TSHB (ENSSHAG00000011393)	TSPAN2 (ENSSHAG00000032135)	ENSSHAG00000011855	NGF (ENSSHAG00000013026)	VANGL1 (ENSSHAG00000014752)	CASQ2 (ENSSHAG00000014881) #16	NHLH2 (ENSSHAG00000015472) #18	ENSSHAG00000026266	SLC22A15 (ENSSHAG00000015912) #19	MAB21L3 (ENSSHAG00000022094) #20	ATP1A1 (ENSSHAG00000016979) #22	ENSSHAG00000017292	IGSF3 (ENSSHAG00000027689) #23	ENSSHAG00000017759	PTGFRN (ENSSHAG00000018051) #25	CD101 (ENSSHAG00000018141) #26	TTF2 (ENSSHAG00000018195) #27	TRIM45 (ENSSHAG00000018250) #28	VTCN1 (ENSSHAG00000018283) #29	MAN1A2 (ENSSHAG00000006188) #30	TENT5C (ENSSHAG00000024267) #31	GDAP2 (ENSSHAG00000003812)	WDR3 (ENSSHAG00000005169)	SPAG17 (ENSSHAG00000005600)	ENSSHAG00000031021	TBX15 (ENSSHAG00000012785)
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.x	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT00960000186961	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	276																ENSMEUG00000015137 #22
Wallaby	MODERN SPECIES	6778																ENSMEUG00000013265 #22
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947.x	ENSGT00390000016950	ENSGT00390000018003.a	ENSGT00940000163318	ENSGT00390000003368	ENSGT00940000158152	ENSGT00940000157504	ENSGT00390000007725.A.b	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000155177.b #23	ENSGT00960000186961	ENSGT00940000158367 #25	ENSGT00940000161722 #26	ENSGT00940000162718 #27	ENSGT00940000154334.k #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A
koala	MODERN SPECIES	4	AMPD1 (ENSPCIG00000022674)	NRAS (ENSPCIG00000022594)	CSDE1 (ENSPCIG00000022587)	SIKE1 (ENSPCIG00000022581)	ENSPCIG00000022577	SYCP1 (ENSPCIG00000022572)	TSHB (ENSPCIG00000022570)	TSPAN2 (ENSPCIG00000022568)	ENSPCIG00000022566	NGF (ENSPCIG00000028939)	VANGL1 (ENSPCIG00000001310)	CASQ2 (ENSPCIG00000001270) #16	NHLH2 (ENSPCIG00000031517) #18	SLC22A15 (ENSPCIG00000033801) #19	MAB21L3 (ENSPCIG00000010827) #20	ATP1A1 (ENSPCIG00000004151) #22	ENSPCIG00000005860	IGSF3 (ENSPCIG00000005858) #23	ENSPCIG00000031241	ENSPCIG00000033767	PTGFRN (ENSPCIG00000003461) #25	CD101 (ENSPCIG00000003473) #26	TTF2 (ENSPCIG00000003483) #27	TRIM45 (ENSPCIG00000003500) #28	VTCN1 (ENSPCIG00000003514) #29	MAN1A2 (ENSPCIG00000023762) #30	TENT5C (ENSPCIG00000009669) #31	GDAP2 (ENSPCIG00000000919)	WDR3 (ENSPCIG00000000938)	SPAG17 (ENSPCIG00000000977)	ENSPCIG00000037477
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1021	CSDE1 (ENSVURG00010009236)	SIKE1 (ENSVURG00010009209)	ENSVURG00010008750	ENSVURG00010008707	TSHB (ENSVURG00010008697)	TSPAN2 (ENSVURG00010008617)	ENSVURG00010008604	NGF (ENSVURG00010008601)	ENSVURG00010008585	VANGL1 (ENSVURG00010008571)	CASQ2 (ENSVURG00010008538) #16	NHLH2 (ENSVURG00010008530) #18	SLC22A15 (ENSVURG00010008519) #19	MAB21L3 (ENSVURG00010008509) #20	ENSVURG00010008506	ATP1A1 (ENSVURG00010008458) #22	ENSVURG00010008439	IGSF3 (ENSVURG00010008429) #23	ENSVURG00010008419	PTGFRN (ENSVURG00010008404) #25	CD101 (ENSVURG00010008389) #26	TTF2 (ENSVURG00010008350) #27	TRIM45 (ENSVURG00010008336) #28	VTCN1 (ENSVURG00010008325) #29	MAN1A2 (ENSVURG00010008291) #30	TENT5C (ENSVURG00010008285) #31	GDAP2 (ENSVURG00010008266)	WDR3 (ENSVURG00010008236)	SPAG17 (ENSVURG00010008196)	TBX15 (ENSVURG00010008181)	WARS2 (ENSVURG00010008172)
Common wonbat	MODERN SPECIES	1070	CRP (ENSVURG00010002451)	DUSP23 (ENSVURG00010002433)	ENSVURG00010002392	SLAMF8 (ENSVURG00010002381) ##24	VSIG8 (ENSVURG00010002373)	CFAP45 (ENSVURG00010002351)	TAGLN2 (ENSVURG00010002337)	IGSF9 (ENSVURG00010002314)	ENSVURG00010002305 ##24	PIGM (ENSVURG00010002300)	KCNJ10 (ENSVURG00010002293)	KCNJ9 (ENSVURG00010002274)	IGSF8 (ENSVURG00010002261)	ATP1A2 (ENSVURG00010002235)	ATP1A4 (ENSVURG00010002214)	ENSVURG00010002197 #22	ENSVURG00010002187 ##16	PEA15 (ENSVURG00010002176)	ENSVURG00010002144	ENSVURG00010002119	COPA (ENSVURG00010002074)	NCSTN (ENSVURG00010002039)	NHLH1 (ENSVURG00010002027)	VANGL2 (ENSVURG00010002013)	ENSVURG00010001994 ##24	ENSVURG00010001911 ##24	ENSVURG00010001856 ##24	ENSVURG00010001843 ##24	ENSVURG00010001833 ##24	ENSVURG00010001826 ##24	ENSVURG00010001811 ##24
Platypus	MODERN SPECIES	7	GSK3B (ENSOANG00000001670)	ENSOANG00000050472	ENSOANG00000041372	COX17 (ENSOANG00000037632)	ENSOANG00000048908	PLA1A (ENSOANG00000048291)	ENSOANG00000040539	ADPRH (ENSOANG00000037344)	ENSOANG00000050911	POGLUT1 (ENSOANG00000044666)	VANGL1 (ENSOANG00000042017)	ENSOANG00000021966 #16	NHLH2 (ENSOANG00000009820) #18	SLC22A15 (ENSOANG00000044054) #19	MAB21L3 (ENSOANG00000002511) #20	ATP1A1 (ENSOANG00000037687) #22	ENSOANG00000040389	ENSOANG00000040078	IGSF3 (ENSOANG00000048085) #23	TMEM39A (ENSOANG00000047837)	ENSOANG00000039096	B4GALT4 (ENSOANG00000044285)	UPK1B (ENSOANG00000049892)	IGSF11 (ENSOANG00000044874)	HSD17B7 (ENSOANG00000048102)	RGS5 (ENSOANG00000044194)	RGS4 (ENSOANG00000046116)	NUF2 (ENSOANG00000045469)	PBX1 (ENSOANG00000006908)	LMX1A (ENSOANG00000043211)	RXRG (ENSOANG00000038239)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Lepidosauria	ANCESTRAL SPECIES	96			ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Episquamata	ANCESTRAL SPECIES	6	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694
Laterata	ANCESTRAL SPECIES	7	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694	ENSGT00940000159540
Argentine black and white tegu	MODERN SPECIES	45	TMEM52B (ENSSMRG00000004442)	GABARAPL1 (ENSSMRG00000004405)	ENSSMRG00000004399	TRPC4 (ENSSMRG00000003736)	POSTN (ENSSMRG00000003693)	SUPT20H (ENSSMRG00000003469)	EXOSC8 (ENSSMRG00000003449)	ALG5 (ENSSMRG00000003444)	TMEM39A (ENSSMRG00000003426)	ENSSMRG00000003418	VANGL1 (ENSSMRG00000003416)	CASQ2 (ENSSMRG00000003383) #16	NHLH2 (ENSSMRG00000003377) #18	SLC22A15 (ENSSMRG00000003365) #19	MAB21L3 (ENSSMRG00000003324) #20	ATP1A1 (ENSSMRG00000003307) #22	CYP4F22 (ENSSMRG00000003283)	PGLYRP2 (ENSSMRG00000003278)	LDLR (ENSSMRG00000003274)	ENSSMRG00000003234	KANK2 (ENSSMRG00000003219)	DOCK6 (ENSSMRG00000003144)	ENSSMRG00000003121	RAB3D (ENSSMRG00000003115)	PLPPR2 (ENSSMRG00000003063)	SWSAP1 (ENSSMRG00000003060)	EPOR (ENSSMRG00000003055)	RGL3 (ENSSMRG00000003033)	ENSSMRG00000003025	PRKCSH (ENSSMRG00000003008)	ELAVL3 (ENSSMRG00000003004)
Common wall lizard	MODERN SPECIES	8								CHD1L (ENSPMRG00000023281)	VANGL1 (ENSPMRG00000023286)	ENSPMRG00000023288	ENSPMRG00000023291	NHLH2 (ENSPMRG00000016824) #18	SLC22A15 (ENSPMRG00000016829) #19	MAB21L3 (ENSPMRG00000016836) #20	ENSPMRG00000016841	ATP1A1 (ENSPMRG00000016847) #22	PLA1A (ENSPMRG00000016859)	POPDC2 (ENSPMRG00000016870)	COX17 (ENSPMRG00000016875)	CFAP91 (ENSPMRG00000016880)	GSK3B (ENSPMRG00000016914)	GPR156 (ENSPMRG00000016925)	LRRC58 (ENSPMRG00000016931)	ENSPMRG00000016932	FSTL1 (ENSPMRG00000016933)	NDUFB4 (ENSPMRG00000016944)	HGD (ENSPMRG00000016953)	RABL3 (ENSPMRG00000016963)	GTF2E1 (ENSPMRG00000016971)	STXBP5L (ENSPMRG00000016980)	POLQ (ENSPMRG00000017034)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00730000111328	ENSGT00940000156876	ENSGT01060000248594.e.b	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694	ENSGT00940000159540
Elapidae	ANCESTRAL SPECIES	28	ENSGT00940000163990.b.b	ENSGT00670000098076	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364.j #19	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024.a	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b.c	ENSGT00940000158694	ENSGT00940000159540
Elapidae_a	ANCESTRAL SPECIES	47	ENSGT00940000163990.b.b	ENSGT00670000098076	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402.f	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364.j #19	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024.a	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b.c	ENSGT00940000158694	ENSGT00940000159540
Acanthophiinae	ANCESTRAL SPECIES	44	ENSGT00940000163990.b.b	ENSGT00670000098076	ENSGT00390000018541	ENSGT00390000010157.b	ENSGT00940000160377	ENSGT00530000063860.b	ENSGT00390000013549.a.a	ENSGT00950000183130.B	ENSGT00940000153481.C	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402.f	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364.j #19	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT01040000242649	ENSGT00390000003024.a	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b.c	ENSGT00940000158694
Eastern brown snake	MODERN SPECIES	59	ENSPTXG00000014931	ENSPTXG00000014926	TIMM29 (ENSPTXG00000014925)	YIPF2 (ENSPTXG00000014920)	CARM1 (ENSPTXG00000014915)	POSTN (ENSPTXG00000014901)	SUPT20H (ENSPTXG00000014888)	EXOSC8 (ENSPTXG00000014882)	ALG5 (ENSPTXG00000014877)	TMEM39A (ENSPTXG00000014874)	ENSPTXG00000014870	CHD1L (ENSPTXG00000014866)	CASQ2 (ENSPTXG00000014862) #16	NHLH2 (ENSPTXG00000014861) #18	SLC22A15 (ENSPTXG00000014858) #19	ATP1A1 (ENSPTXG00000014853) #22	PLA1A (ENSPTXG00000014851)	POPDC2 (ENSPTXG00000014813)	ENSPTXG00000014812	GSK3B (ENSPTXG00000014811)	GPR156 (ENSPTXG00000014809)	LRRC58 (ENSPTXG00000014808)	FSTL1 (ENSPTXG00000014805)	NDUFB4 (ENSPTXG00000014804)	HGD (ENSPTXG00000014802)	RABL3 (ENSPTXG00000014801)	GTF2E1 (ENSPTXG00000014800)	STXBP5L (ENSPTXG00000014640)	POLQ (ENSPTXG00000014632)	ENSPTXG00000014625	ENSPTXG00000014621
Mainland tiger snake	MODERN SPECIES	73	ENSNSUG00000019404	TIMM29 (ENSNSUG00000019403)	YIPF2 (ENSNSUG00000019402)	CARM1 (ENSNSUG00000019401)	ENSNSUG00000019399	POSTN (ENSNSUG00000019345)	ENSNSUG00000019344	SUPT20H (ENSNSUG00000019343)	EXOSC8 (ENSNSUG00000019342)	ALG5 (ENSNSUG00000019341)	TMEM39A (ENSNSUG00000019340)	CHD1L (ENSNSUG00000019339)	CASQ2 (ENSNSUG00000019338) #16	NHLH2 (ENSNSUG00000019337) #18	SLC22A15 (ENSNSUG00000019336) #19	ATP1A1 (ENSNSUG00000019161) #22	PLA1A (ENSNSUG00000019160)	POPDC2 (ENSNSUG00000019159)	ENSNSUG00000019158	CFAP91 (ENSNSUG00000019157)	GSK3B (ENSNSUG00000019156)	GPR156 (ENSNSUG00000019155)	LRRC58 (ENSNSUG00000019154)	FSTL1 (ENSNSUG00000019152)	NDUFB4 (ENSNSUG00000019151)	HGD (ENSNSUG00000019150)	RABL3 (ENSNSUG00000019149)	ENSNSUG00000019148	ENSNSUG00000019147	STXBP5L (ENSNSUG00000019146)	POLQ (ENSNSUG00000019145)
Blue-lipped sea krait	MODERN SPECIES	7264																ATP1A1 (ENSLLTG00000008806) #22
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	TIMM29 (ENSNNAG00000017806)	YIPF2 (ENSNNAG00000017812)	CARM1 (ENSNNAG00000017817)	POSTN (ENSNNAG00000017837)	ENSNNAG00000017870	SUPT20H (ENSNNAG00000017876)	EXOSC8 (ENSNNAG00000017886)	ALG5 (ENSNNAG00000017889)	TMEM39A (ENSNNAG00000017890)	CHD1L (ENSNNAG00000017899)	ENSNNAG00000017918	CASQ2 (ENSNNAG00000017922) #16	NHLH2 (ENSNNAG00000017926) #18	SLC22A15 (ENSNNAG00000017928) #19	ENSNNAG00000018176 #22	ENSNNAG00000018835 #22	PLA1A (ENSNNAG00000018854)	POPDC2 (ENSNNAG00000018864)	ENSNNAG00000007116	ENSNNAG00000007253	ENSNNAG00000007368	GSK3B (ENSNNAG00000007404)	GPR156 (ENSNNAG00000007531)	LRRC58 (ENSNNAG00000007609)	FSTL1 (ENSNNAG00000007651)	NDUFB4 (ENSNNAG00000007707)	HGD (ENSNNAG00000007756)	RABL3 (ENSNNAG00000007847)	GTF2E1 (ENSNNAG00000007877)	STXBP5L (ENSNNAG00000007934)	POLQ (ENSNNAG00000008643)
Indian cobra	MODERN SPECIES	1	ENSNNAG00000017802	TIMM29 (ENSNNAG00000017806)	YIPF2 (ENSNNAG00000017812)	CARM1 (ENSNNAG00000017817)	POSTN (ENSNNAG00000017837)	ENSNNAG00000017870	SUPT20H (ENSNNAG00000017876)	EXOSC8 (ENSNNAG00000017886)	ALG5 (ENSNNAG00000017889)	TMEM39A (ENSNNAG00000017890)	CHD1L (ENSNNAG00000017899)	ENSNNAG00000017918	CASQ2 (ENSNNAG00000017922) #16	NHLH2 (ENSNNAG00000017926) #18	SLC22A15 (ENSNNAG00000017928) #19	ENSNNAG00000018176 #22	ENSNNAG00000018835 #22	PLA1A (ENSNNAG00000018854)	POPDC2 (ENSNNAG00000018864)	ENSNNAG00000007116	ENSNNAG00000007253	ENSNNAG00000007368	GSK3B (ENSNNAG00000007404)	GPR156 (ENSNNAG00000007531)	LRRC58 (ENSNNAG00000007609)	FSTL1 (ENSNNAG00000007651)	NDUFB4 (ENSNNAG00000007707)	HGD (ENSNNAG00000007756)	RABL3 (ENSNNAG00000007847)	GTF2E1 (ENSNNAG00000007877)	STXBP5L (ENSNNAG00000007934)
Lizard	MODERN SPECIES	1027															ENSACAG00000043458	ENSACAG00000003402 #22	ENSACAG00000037415	PLA1A (ENSACAG00000003503)	POPDC2 (ENSACAG00000003557)	ENSACAG00000026666	CFAP91 (ENSACAG00000003580)	ENSACAG00000027212	GSK3B (ENSACAG00000003655)	SHFL (ENSACAG00000003734)	ENSACAG00000035757	ANGPTL6 (ENSACAG00000003753)	ENSACAG00000003786	PPAN (ENSACAG00000003838)	P2RY11 (ENSACAG00000028164)	ENSACAG00000035748	EIF3G (ENSACAG00000003880)
tuatara	MODERN SPECIES	1096	ENSSPUG00000016720	ENSSPUG00000016735	AQP6 (ENSSPUG00000016757)	TRPC4 (ENSSPUG00000016771)	POSTN (ENSSPUG00000016779)	SUPT20H (ENSSPUG00000016802)	EXOSC8 (ENSSPUG00000016825)	ALG5 (ENSSPUG00000016834)	TMEM39A (ENSSPUG00000016848)	CHD1L (ENSSPUG00000016865)	VANGL1 (ENSSPUG00000016879)	CASQ2 (ENSSPUG00000016892) #16	NHLH2 (ENSSPUG00000016906) #18	SLC22A15 (ENSSPUG00000016922) #19	MAB21L3 (ENSSPUG00000016959) #20	ATP1A1 (ENSSPUG00000016982) #22	ENSSPUG00000017027	PLA1A (ENSSPUG00000017042)	POPDC2 (ENSSPUG00000017054)	ENSSPUG00000017067	CFAP91 (ENSSPUG00000017093)	GSK3B (ENSSPUG00000017220)	LRRC58 (ENSSPUG00000017254)	FSTL1 (ENSSPUG00000017282)	ENSSPUG00000017292	HGD (ENSSPUG00000017347)	RABL3 (ENSSPUG00000017490)	GTF2E1 (ENSSPUG00000017495)
Archelosauria	ANCESTRAL SPECIES	30	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Aves	ANCESTRAL SPECIES		ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000156392.a	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000159015
Golden eagle	MODERN SPECIES	23	ENSACCG00020001577	IGSF11 (ENSACCG00020001558)	UPK1B (ENSACCG00020001519)	ARHGAP31 (ENSACCG00020001486)	ENSACCG00020001472	ENSACCG00020001447	B4GALT4 (ENSACCG00020001427)	TMEM39A (ENSACCG00020001402)	ENSACCG00020001380	CHD1L (ENSACCG00020001177)	VANGL1 (ENSACCG00020000895)	CASQ2 (ENSACCG00020000868) #16	NHLH2 (ENSACCG00020000844) #18	SLC22A15 (ENSACCG00020000808) #19	MAB21L3 (ENSACCG00020000703) #20	ATP1A1 (ENSACCG00020000664) #22	ENSACCG00020000616	PLA1A (ENSACCG00020000537)	POPDC2 (ENSACCG00020000516)	ENSACCG00020000466	CFAP91 (ENSACCG00020000422)	GSK3B (ENSACCG00020000388)	GPR156 (ENSACCG00020000354)	LRRC58 (ENSACCG00020000335)	FSTL1 (ENSACCG00020016401)	NDUFB4 (ENSACCG00020016392)	HGD (ENSACCG00020016380)	RABL3 (ENSACCG00020016375)	GTF2E1 (ENSACCG00020016373)	STXBP5L (ENSACCG00020016362)	ENSACCG00020016348
Kakapo	MODERN SPECIES	28	GAP43 (ENSSHBG00005009180)	LSAMP (ENSSHBG00005009198)	IGSF11 (ENSSHBG00005009215)	UPK1B (ENSSHBG00005009226)	ARHGAP31 (ENSSHBG00005009255)	ENSSHBG00005009265	ENSSHBG00005009271	B4GALT4 (ENSSHBG00005009283)	TMEM39A (ENSSHBG00005009297)	ENSSHBG00005009317	VANGL1 (ENSSHBG00005009329)	CASQ2 (ENSSHBG00005009342) #16	ENSSHBG00005009363	SLC22A15 (ENSSHBG00005009376) #19	MAB21L3 (ENSSHBG00005009404) #20	ATP1A1 (ENSSHBG00005009427) #22	ENSSHBG00005009455	ENSSHBG00005009467	MIX23 (ENSSHBG00005009487)	FAM162A (ENSSHBG00005009499)	KPNA1 (ENSSHBG00005009510)	FBXO40 (ENSSHBG00005009521)	SCNN1A (ENSSHBG00005009530)	VAMP1 (ENSSHBG00005009551)	MRPL51 (ENSSHBG00005009560)	NCAPD2 (ENSSHBG00005000924)	ENSSHBG00005000939	GAPDH (ENSSHBG00005000947)	IFFO1 (ENSSHBG00005000954)	NOP2 (ENSSHBG00005005753)	CHD4 (ENSSHBG00005005796)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Passeriformes_g	ANCESTRAL SPECIES	25	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000158516	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Common canary	MODERN SPECIES	4	LSAMP (ENSSCAG00000009446)	ENSSCAG00000009462	IGSF11 (ENSSCAG00000009501)	UPK1B (ENSSCAG00000009521)	ARHGAP31 (ENSSCAG00000009531)	ENSSCAG00000009539	ENSSCAG00000009571	B4GALT4 (ENSSCAG00000009577)	TMEM39A (ENSSCAG00000009590)	ENSSCAG00000009597	CHD1L (ENSSCAG00000009606)	VANGL1 (ENSSCAG00000009621)	CASQ2 (ENSSCAG00000009630) #16	SLC22A15 (ENSSCAG00000009657) #19	MAB21L3 (ENSSCAG00000009662) #20	ATP1A1 (ENSSCAG00000009673) #22	ENSSCAG00000009678	ENSSCAG00000009682	PLA1A (ENSSCAG00000009691)	POPDC2 (ENSSCAG00000009705)	ENSSCAG00000009708	CFAP91 (ENSSCAG00000009721)	GSK3B (ENSSCAG00000009741)	GPR156 (ENSSCAG00000009744)	LRRC58 (ENSSCAG00000009753)	FSTL1 (ENSSCAG00000009760)	NDUFB4 (ENSSCAG00000009763)	HGD (ENSSCAG00000009770)	RABL3 (ENSSCAG00000009779)	GTF2E1 (ENSSCAG00000009784)	STXBP5L (ENSSCAG00000009968)
Zebra finch	MODERN SPECIES		ENSTGUG00000022659	ENSTGUG00000019556	ENSTGUG00000027649	IGSF11 (ENSTGUG00000013400)	UPK1B (ENSTGUG00000013399)	ARHGAP31 (ENSTGUG00000020207)	ENSTGUG00000013397	ENSTGUG00000013396	B4GALT4 (ENSTGUG00000013395)	TMEM39A (ENSTGUG00000013394)	ENSTGUG00000013393	CHD1L (ENSTGUG00000013392)	VANGL1 (ENSTGUG00000013391)	CASQ2 (ENSTGUG00000013390) #16	NHLH2 (ENSTGUG00000013389) #18	ATP1A1 (ENSTGUG00000020927) #22	SLC22A15 (ENSTGUG00000013386) #19	ENSTGUG00000020500	ENSTGUG00000013385	PLA1A (ENSTGUG00000013384)	POPDC2 (ENSTGUG00000013383)	ENSTGUG00000029427	CFAP91 (ENSTGUG00000013381)	GSK3B (ENSTGUG00000013380)	GPR156 (ENSTGUG00000013379)	LRRC58 (ENSTGUG00000022807)	FSTL1 (ENSTGUG00000013377)	NDUFB4 (ENSTGUG00000013376)	HGD (ENSTGUG00000013375)	RABL3 (ENSTGUG00000013374)	GTF2E1 (ENSTGUG00000013373)
Medium ground finch	MODERN SPECIES	23	ENSGFOG00000002245	LSAMP (ENSGFOG00000002247)	IGSF11 (ENSGFOG00000002265)	UPK1B (ENSGFOG00000002278)	ARHGAP31 (ENSGFOG00000002291)	ENSGFOG00000002315	ENSGFOG00000002335	B4GALT4 (ENSGFOG00000002353)	TMEM39A (ENSGFOG00000002378)	ENSGFOG00000002391	CHD1L (ENSGFOG00000002423)	VANGL1 (ENSGFOG00000002463)	CASQ2 (ENSGFOG00000002484) #16	SLC22A15 (ENSGFOG00000002542) #19	MAB21L3 (ENSGFOG00000002563) #20	ATP1A1 (ENSGFOG00000002575) #22	ENSGFOG00000002615	ENSGFOG00000002627	PLA1A (ENSGFOG00000000028)	POPDC2 (ENSGFOG00000000029)	ENSGFOG00000000031	CFAP91 (ENSGFOG00000000032)	GSK3B (ENSGFOG00000000035)	GPR156 (ENSGFOG00000000036)	LRRC58 (ENSGFOG00000000041)	FSTL1 (ENSGFOG00000000047)	ENSGFOG00000000053	HGD (ENSGFOG00000000064)	ENSGFOG00000000090	GTF2E1 (ENSGFOG00000000093)	STXBP5L (ENSGFOG00000000112)
Flycatcher	MODERN SPECIES		LSAMP (ENSFALG00000006033)	IGSF11 (ENSFALG00000006041)	UPK1B (ENSFALG00000026624)	ENSFALG00000028286	ENSFALG00000006064	ENSFALG00000006068	B4GALT4 (ENSFALG00000006070)	ENSFALG00000006072	ENSFALG00000006077	ENSFALG00000006087	VANGL1 (ENSFALG00000006097)	CASQ2 (ENSFALG00000006100) #16	ENSFALG00000006103	SLC22A15 (ENSFALG00000006106) #19	MAB21L3 (ENSFALG00000006110) #20	ATP1A1 (ENSFALG00000006143) #22	ENSFALG00000024943	TBX19 (ENSFALG00000005706)	SFT2D2 (ENSFALG00000028942)	TIPRL (ENSFALG00000005729)	GPR161 (ENSFALG00000005743)	ENSFALG00000005755	ENSFALG00000005759	ENSFALG00000005771	ENSFALG00000005788	ENSFALG00000023110	ENSFALG00000005803	CMSS1 (ENSFALG00000025596)	ENSFALG00000005829	TBC1D23 (ENSFALG00000005843)	NIT2 (ENSFALG00000005878)
Great tit	MODERN SPECIES		LSAMP (ENSPMJG00000010853)	IGSF11 (ENSPMJG00000010812)	UPK1B (ENSPMJG00000010779)	ARHGAP31 (ENSPMJG00000010778)	ENSPMJG00000010776	ENSPMJG00000010775	B4GALT4 (ENSPMJG00000010774)	TMEM39A (ENSPMJG00000010742)	ENSPMJG00000010739	CHD1L (ENSPMJG00000010736)	VANGL1 (ENSPMJG00000010735)	CASQ2 (ENSPMJG00000010731) #16	NHLH2 (ENSPMJG00000010729) #18	SLC22A15 (ENSPMJG00000010688) #19	MAB21L3 (ENSPMJG00000010685) #20	ATP1A1 (ENSPMJG00000010677) #22	ENSPMJG00000010675	PLA1A (ENSPMJG00000010672)	POPDC2 (ENSPMJG00000010671)	COX17 (ENSPMJG00000010664)	CFAP91 (ENSPMJG00000010605)	GSK3B (ENSPMJG00000010600)	GPR156 (ENSPMJG00000010598)	LRRC58 (ENSPMJG00000010597)	ENSPMJG00000010530	FSTL1 (ENSPMJG00000010529)	ENSPMJG00000010528	HGD (ENSPMJG00000010526)	RABL3 (ENSPMJG00000010524)	GTF2E1 (ENSPMJG00000010522)	STXBP5L (ENSPMJG00000010500)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01030000235556	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694
Anatidae	ANCESTRAL SPECIES	6	ENSGT00940000156392.a	ENSGT00940000168076	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694
Pink-footed goose	MODERN SPECIES	5	LSAMP (ENSABRG00000009862)	IGSF11 (ENSABRG00000009943)	ENSABRG00000009952	UPK1B (ENSABRG00000009963)	ARHGAP31 (ENSABRG00000010024)	ENSABRG00000010033	ENSABRG00000010037	B4GALT4 (ENSABRG00000010048)	TMEM39A (ENSABRG00000010057)	ENSABRG00000010067	CHD1L (ENSABRG00000010095)	VANGL1 (ENSABRG00000010157)	CASQ2 (ENSABRG00000010169) #16	NHLH2 (ENSABRG00000010180) #18	SLC22A15 (ENSABRG00000010193) #19	ATP1A1 (ENSABRG00000010220) #22	ENSABRG00000010256	PLA1A (ENSABRG00000010260)	POPDC2 (ENSABRG00000010264)	ENSABRG00000010266	CFAP91 (ENSABRG00000010269)	GSK3B (ENSABRG00000010305)	ENSABRG00000010329	GPR156 (ENSABRG00000010338)	LRRC58 (ENSABRG00000010349)	FSTL1 (ENSABRG00000010360)	NDUFB4 (ENSABRG00000010370)	HGD (ENSABRG00000010377)	RABL3 (ENSABRG00000010395)	GTF2E1 (ENSABRG00000010408)	STXBP5L (ENSABRG00000010733)
Duck	MODERN SPECIES		LSAMP (ENSAPLG00000010325)	IGSF11 (ENSAPLG00000008337)	UPK1B (ENSAPLG00000008825)	ARHGAP31 (ENSAPLG00000009089)	ENSAPLG00000025438	ENSAPLG00000009258	B4GALT4 (ENSAPLG00000009388)	TMEM39A (ENSAPLG00000009675)	ENSAPLG00000009803	CHD1L (ENSAPLG00000009976)	VANGL1 (ENSAPLG00000011029)	CASQ2 (ENSAPLG00000011267) #16	NHLH2 (ENSAPLG00000023891) #18	SLC22A15 (ENSAPLG00000012634) #19	MAB21L3 (ENSAPLG00000012622) #20	ATP1A1 (ENSAPLG00000011285) #22	ENSAPLG00000011249	PLA1A (ENSAPLG00000025714)	POPDC2 (ENSAPLG00000019599)	ENSAPLG00000011097	CFAP91 (ENSAPLG00000011017)	GSK3B (ENSAPLG00000007990)	GPR156 (ENSAPLG00000019941)	LRRC58 (ENSAPLG00000029420)	FSTL1 (ENSAPLG00000027059)	NDUFB4 (ENSAPLG00000017845)	HGD (ENSAPLG00000006938)	RABL3 (ENSAPLG00000006732)	GTF2E1 (ENSAPLG00000006481)	STXBP5L (ENSAPLG00000014395)	ENSAPLG00000014869
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01030000235556	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694	ENSGT00390000016694.b
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000154487.A	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01030000235556	ENSGT00940000154840.b #22	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00940000164584	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b	ENSGT00940000158694	ENSGT00390000016694.b
Chicken	MODERN SPECIES		IGSF11 (ENSGALG00010025653)	UPK1B (ENSGALG00010025594)	ARHGAP31 (ENSGALG00010025574)	B3GAT1L (ENSGALG00010025548)	B4GALT3 (ENSGALG00010025531)	B4GALT4 (ENSGALG00010025523)	TMEM39A (ENSGALG00010025481)	ENSGALG00010025465	CHD1L (ENSGALG00010025448)	VANGL1 (ENSGALG00010025428)	CASQ2 (ENSGALG00010025418) #16	NHLH2 (ENSGALG00010025220) #18	SLC22A15 (ENSGALG00010025400) #19	MAB21L3 (ENSGALG00010025382) #20	ENSGALG00010025350	ATP1A1 (ENSGALG00010025292) #22	PLA1A (ENSGALG00010025182)	POPDC2 (ENSGALG00010025168)	COX17 (ENSGALG00010025147)	CFAP91 (ENSGALG00010025138)	GSK3A (ENSGALG00010025103)	GPR156 (ENSGALG00010025060)	LRRC58 (ENSGALG00010026272)	FSTL1 (ENSGALG00010025032)	NDUFB4 (ENSGALG00010024994)	HGD (ENSGALG00010024948)	RABL3 (ENSGALG00010024940)	GTF2E1 (ENSGALG00010024925)	STXBP5L (ENSGALG00010024915)	POLQ (ENSGALG00010024871)	METTL16 (ENSGALG00010024862)
Turkey	MODERN SPECIES		LSAMP (ENSMGAG00000014318)	IGSF11 (ENSMGAG00000014313)	ENSMGAG00000019562	UPK1B (ENSMGAG00000014315)	ENSMGAG00000014314	ENSMGAG00000014312	ENSMGAG00000014308	B4GALT4 (ENSMGAG00000014307)	ENSMGAG00000014306	ENSMGAG00000020983	ENSMGAG00000014304	VANGL1 (ENSMGAG00000014303)	CASQ2 (ENSMGAG00000014302) #16	SLC22A15 (ENSMGAG00000014301) #19	MAB21L3 (ENSMGAG00000014300) #20	ATP1A1 (ENSMGAG00000014297) #22	PLA1A (ENSMGAG00000014293)	POPDC2 (ENSMGAG00000014291)	ENSMGAG00000014290	CFAP91 (ENSMGAG00000014289)	GSK3B (ENSMGAG00000014288)	LRRC58 (ENSMGAG00000014285)	FSTL1 (ENSMGAG00000014283)	ENSMGAG00000016069	HGD (ENSMGAG00000014280)	RABL3 (ENSMGAG00000014276)	GTF2E1 (ENSMGAG00000014272)	STXBP5L (ENSMGAG00000014266)	POLQ (ENSMGAG00000014264)	ENSMGAG00000021653	ENSMGAG00000014258
Japanese quail	MODERN SPECIES		IGSF11 (ENSCJPG00005017409)	UPK1B (ENSCJPG00005017408)	ARHGAP31 (ENSCJPG00005017407)	ENSCJPG00005017405	ENSCJPG00005017403	B4GALT4 (ENSCJPG00005017401)	TMEM39A (ENSCJPG00005017400)	ENSCJPG00005017399	CHD1L (ENSCJPG00005017397)	VANGL1 (ENSCJPG00005017394)	CASQ2 (ENSCJPG00005017386) #16	NHLH2 (ENSCJPG00005017385) #18	SLC22A15 (ENSCJPG00005017383) #19	MAB21L3 (ENSCJPG00005017382) #20	ENSCJPG00005017379	ATP1A1 (ENSCJPG00005017374) #22	PLA1A (ENSCJPG00005017372)	POPDC2 (ENSCJPG00005017369)	ENSCJPG00005017368	CFAP91 (ENSCJPG00005017367)	GSK3B (ENSCJPG00005017366)	GPR156 (ENSCJPG00005017365)	LRRC58 (ENSCJPG00005017363)	FSTL1 (ENSCJPG00005017362)	NDUFB4 (ENSCJPG00005017357)	HGD (ENSCJPG00005017356)	RABL3 (ENSCJPG00005017355)	GTF2E1 (ENSCJPG00005017354)	STXBP5L (ENSCJPG00005017353)	POLQ (ENSCJPG00005017298)	METTL16 (ENSCJPG00005017297)
African ostrich	MODERN SPECIES	620	ENSSCUG00000008282	ENSSCUG00000008283	IGSF11 (ENSSCUG00000008285)	UPK1B (ENSSCUG00000008287)	ARHGAP31 (ENSSCUG00000008288)	ENSSCUG00000008289	ENSSCUG00000008290	B4GALT4 (ENSSCUG00000008291)	TMEM39A (ENSSCUG00000008294)	ENSSCUG00000008297	CHD1L (ENSSCUG00000008298)	VANGL1 (ENSSCUG00000008302)	CASQ2 (ENSSCUG00000008304) #16	SLC22A15 (ENSSCUG00000008306) #19	MAB21L3 (ENSSCUG00000008308) #20	ATP1A1 (ENSSCUG00000008337) #22
Australian saltwater crocodile	MODERN SPECIES	60	ENSCPRG00005003786	IGSF11 (ENSCPRG00005003768)	UPK1B (ENSCPRG00005003732)	ARHGAP31 (ENSCPRG00005003717)	ENSCPRG00005003713	ENSCPRG00005003699	B4GALT4 (ENSCPRG00005003694)	TMEM39A (ENSCPRG00005003687)	ENSCPRG00005003669	CHD1L (ENSCPRG00005003632)	VANGL1 (ENSCPRG00005003618)	CASQ2 (ENSCPRG00005003611) #16	NHLH2 (ENSCPRG00005003607) #18	SLC22A15 (ENSCPRG00005003580) #19	MAB21L3 (ENSCPRG00005003561) #20	ATP1A1 (ENSCPRG00005003542) #22	ENSCPRG00005003516	PLA1A (ENSCPRG00005003510)	POPDC2 (ENSCPRG00005003504)	ENSCPRG00005003500	CFAP91 (ENSCPRG00005003491)	GSK3B (ENSCPRG00005003476)	GPR156 (ENSCPRG00005003458)	LRRC58 (ENSCPRG00005003456)	FSTL1 (ENSCPRG00005003453)	NDUFB4 (ENSCPRG00005003439)	HGD (ENSCPRG00005003427)	RABL3 (ENSCPRG00005003423)	GTF2E1 (ENSCPRG00005003420)	STXBP5L (ENSCPRG00005001784)	ENSCPRG00005001626
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000156392.a	ENSGT00940000168076	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696	ENSGT00950000182906.b.b
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696.hc.a	ENSGT00950000182906.b.b
Emydidae	ANCESTRAL SPECIES	36	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT01030000235556	ENSGT00940000154840.b #22	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT01040000242649	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696.hc.a	ENSGT00950000182906.b.b
painted turtle	MODERN SPECIES		ARHGAP31 (ENSCPBG00000002832)	ENSCPBG00000002821	ENSCPBG00000002779	ENSCPBG00000002738	B4GALT4 (ENSCPBG00000002710)	ENSCPBG00000002678	TMEM39A (ENSCPBG00000002656)	ENSCPBG00000002639	CHD1L (ENSCPBG00000002600)	VANGL1 (ENSCPBG00000002571)	CASQ2 (ENSCPBG00000002545) #16	NHLH2 (ENSCPBG00000002535) #18	SLC22A15 (ENSCPBG00000002507) #19	MAB21L3 (ENSCPBG00000002492) #20	ENSCPBG00000002478	ATP1A1 (ENSCPBG00000002472) #22	ENSCPBG00000002355	PLA1A (ENSCPBG00000002278)	POPDC2 (ENSCPBG00000002262)	ENSCPBG00000002241	CFAP91 (ENSCPBG00000002188)	GSK3B (ENSCPBG00000002148)	GPR156 (ENSCPBG00000002112)	LRRC58 (ENSCPBG00000002101)	FSTL1 (ENSCPBG00000002072)	NDUFB4 (ENSCPBG00000002050)	HGD (ENSCPBG00000002015)	RABL3 (ENSCPBG00000001999)	GTF2E1 (ENSCPBG00000001978)	STXBP5L (ENSCPBG00000001879)	POLQ (ENSCPBG00000001827)
Three-toed box turtle	MODERN SPECIES	114	IGSF11 (ENSTMTG00000004818)	UPK1B (ENSTMTG00000004724)	ARHGAP31 (ENSTMTG00000004686)	ENSTMTG00000004547	ENSTMTG00000004515	B4GALT4 (ENSTMTG00000004505)	TMEM39A (ENSTMTG00000004488)	ENSTMTG00000004408	CHD1L (ENSTMTG00000004351)	VANGL1 (ENSTMTG00000004331)	CASQ2 (ENSTMTG00000004186) #16	NHLH2 (ENSTMTG00000004165) #18	SLC22A15 (ENSTMTG00000004132) #19	MAB21L3 (ENSTMTG00000004115) #20	ENSTMTG00000004093	ATP1A1 (ENSTMTG00000004043) #22	PLA1A (ENSTMTG00000004015)	POPDC2 (ENSTMTG00000003880)	COX17 (ENSTMTG00000003860)	ENSTMTG00000003847	ENSTMTG00000003833	ENSTMTG00000003818	ENSTMTG00000003808	CFAP91 (ENSTMTG00000003678)	GSK3B (ENSTMTG00000003614)	GPR156 (ENSTMTG00000003580)	LRRC58 (ENSTMTG00000003570)	FSTL1 (ENSTMTG00000003539)	NDUFB4 (ENSTMTG00000003518)	HGD (ENSTMTG00000003464)	RABL3 (ENSTMTG00000003439)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000165328	ENSGT00940000156392.a	ENSGT00940000160779	ENSGT00940000159458	ENSGT00940000165782	ENSGT00940000166068	ENSGT00940000158378	ENSGT00390000018895.a	ENSGT00940000166284	ENSGT00940000159402	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000162602 #18	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT00510000049596	ENSGT00940000159279	ENSGT00390000002563.b.a.b	ENSGT00390000002329	ENSGT00390000003024	ENSGT00520000055635.c.a	ENSGT00940000159755	ENSGT00940000156556	ENSGT00940000157784	ENSGT00390000007133	ENSGT00390000004601	ENSGT00390000007467	ENSGT00390000016696.hc.a	ENSGT00950000182906.b.b
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005000488	IGSF11 (ENSGEVG00005000512)	UPK1B (ENSGEVG00005000534)	ARHGAP31 (ENSGEVG00005000557)	ENSGEVG00005000587	ENSGEVG00005000598	B4GALT4 (ENSGEVG00005000616)	TMEM39A (ENSGEVG00005000643)	ENSGEVG00005000681	CHD1L (ENSGEVG00005000712)	VANGL1 (ENSGEVG00005000739)	CASQ2 (ENSGEVG00005000799) #16	NHLH2 (ENSGEVG00005000818) #18	SLC22A15 (ENSGEVG00005000829) #19	MAB21L3 (ENSGEVG00005000850) #20	ATP1A1 (ENSGEVG00005000870) #22	ENSGEVG00005000905	ENSGEVG00005000922	PLA1A (ENSGEVG00005000951)	POPDC2 (ENSGEVG00005000985)	COX17 (ENSGEVG00005001021)	ENSGEVG00005001033	CFAP91 (ENSGEVG00005001084)	GSK3B (ENSGEVG00005001193)	GPR156 (ENSGEVG00005001247)	LRRC58 (ENSGEVG00005001266)	FSTL1 (ENSGEVG00005001285)	ENSGEVG00005001314	NDUFB4 (ENSGEVG00005001388)	HGD (ENSGEVG00005001401)	RABL3 (ENSGEVG00005001440)
Abingdon island giant tortoise	MODERN SPECIES	2119										VANGL1 (ENSCABG00000018702)	CASQ2 (ENSCABG00000018699) #16	NHLH2 (ENSCABG00000018697) #18	ENSCABG00000018696 #19	ENSCABG00000018695 #19	MAB21L3 (ENSCABG00000018693) #20	ATP1A1 (ENSCABG00000018458) #22	ENSCABG00000018421	PLA1A (ENSCABG00000018418)	POPDC2 (ENSCABG00000018409)	COX17 (ENSCABG00000018404)	CFAP91 (ENSCABG00000018389)	GSK3B (ENSCABG00000018385)	GPR156 (ENSCABG00000018384)	LRRC58 (ENSCABG00000018383)	FSTL1 (ENSCABG00000018380)
Chinese turtle	MODERN SPECIES	1836										TMEM39A (ENSPSIG00000011628)	ENSPSIG00000011910	CHD1L (ENSPSIG00000012595)	CASQ2 (ENSPSIG00000014323) #16	SLC22A15 (ENSPSIG00000016056) #19	MAB21L3 (ENSPSIG00000016310) #20	ATP1A1 (ENSPSIG00000016388) #22	PLA1A (ENSPSIG00000006753)	POPDC2 (ENSPSIG00000007812)	ENSPSIG00000001991	CFAP91 (ENSPSIG00000008161)	GSK3B (ENSPSIG00000008971)	GPR156 (ENSPSIG00000010275)	LRRC58 (ENSPSIG00000010373)	FSTL1 (ENSPSIG00000010391)	HGD (ENSPSIG00000011020)	RABL3 (ENSPSIG00000011358)	GTF2E1 (ENSPSIG00000012408)	STXBP5L (ENSPSIG00000012718)	POLQ (ENSPSIG00000013657)	METTL16 (ENSPSIG00000014760)	ENSPSIG00000014847
Anura	ANCESTRAL SPECIES	255										ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000012496.a	ENSGT00390000019377.b #16	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00940000162718 #27	ENSGT00940000155177.b.m #23	ENSGT00940000155177.b.n.a #23	ENSGT00940000158367 #25
Leishan spiny toad	MODERN SPECIES	1631																ATP1A1 (ENSLLEG00000028068) #22	ENSLLEG00000028497	ENSLLEG00000028520
Frog	MODERN SPECIES	2	cryaa (ENSXETG00000020802)	u2af1 (ENSXETG00000040592)	ENSXETG00000045493	icoslg (ENSXETG00000047833)	ENSXETG00000045526	ENSXETG00000041442	ENSXETG00000042310	ENSXETG00000041110	timmdc1 (ENSXETG00000041609)	poglut1 (ENSXETG00000047724)	VANGL1 (ENSXETG00000048296)	casq2 (ENSXETG00000046235) #16	ENSXETG00000048594	slc22a15.1 (ENSXETG00000020363) #19	MAB21L3 (ENSXETG00000049082) #20	atp1a1 (ENSXETG00000020366) #22	ENSXETG00000040202	ENSXETG00000040957	ENSXETG00000040342	trim45 (ENSXETG00000017042) ##28	ENSXETG00000035904 #27	ENSXETG00000043768 #23	igsf3 (ENSXETG00000047805) #23	mcmbp (ENSXETG00000003351) #25	cbs (ENSXETG00000047466)	pknox1 (ENSXETG00000032286)	ndufv3 (ENSXETG00000045013)	wdr4 (ENSXETG00000044423)	csrp3 (ENSXETG00000010016)	ENSXETG00000044217	vps28 (ENSXETG00000004029)
Coelacanth	MODERN SPECIES	966			SCAF4 (ENSLACG00000013913)	SOD1 (ENSLACG00000013736)	TIAM1 (ENSLACG00000011787)	ENSLACG00000011362	cldn8.3 (ENSLACG00000011216)	ENSLACG00000010878	GRIK1 (ENSLACG00000009256)	TIMMDC1 (ENSLACG00000008939)	POGLUT1 (ENSLACG00000008517)	VANGL1 (ENSLACG00000008020)	CASQ2 (ENSLACG00000007173) #16	SLC22A15 (ENSLACG00000005854) #19	MAB21L3 (ENSLACG00000005381) #20	ATP1A1 (ENSLACG00000001454) #22
Actinopterygii	ANCESTRAL SPECIES	78	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00390000013113	ENSGT00940000157065	ENSGT00390000015060	ENSGT00940000161679	ENSGT00940000154497.B	ENSGT00390000014606	ENSGT00390000013817	ENSGT00940000158283	ENSGT00390000019377.b #16	ENSGT00390000012496.a	ENSGT00940000164480	ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000155177.a ##23	ENSGT00940000155177.b #23	ENSGT00940000162718 #27	ENSGT00940000154334 #28	ENSGT00940000157300 #29	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00940000165068	ENSGT00390000013693	ENSGT00940000159013
Reedfish	MODERN SPECIES	12	setd4 (ENSECRG00000001990)	cryzl1 (ENSECRG00000002041)	ITSN1 (ENSECRG00000002170)	atp5po (ENSECRG00000002359)	MRPS6 (ENSECRG00000002372)	KCNE2 (ENSECRG00000002381)	TIMMDC1 (ENSECRG00000002396)	poglut1 (ENSECRG00000002414)	casq2 (ENSECRG00000002434) #16	vangl1 (ENSECRG00000002451)	nhlh2 (ENSECRG00000002461)	ENSECRG00000002471	SLC22A15 (ENSECRG00000002483) #19	ENSECRG00000002505	mab21l3 (ENSECRG00000002517) #20	atp1a1a.2 (ENSECRG00000002714) #22	ENSECRG00000004992	ENSECRG00000005051	ENSECRG00000005323	ENSECRG00000005337 #24	ENSECRG00000005374	ENSECRG00000005391 #25	ENSECRG00000005409 ##23	ENSECRG00000005420	igsf3 (ENSECRG00000005427) #23	ENSECRG00000005441	ENSECRG00000005464 #29	ENSECRG00000005475	ENSECRG00000005482	ENSECRG00000005494	man1a2 (ENSECRG00000005505) #30
Neopterygii	ANCESTRAL SPECIES	173														ENSGT00940000160364 #19	ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT01030000235556	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000155177.a ##23	ENSGT00940000155177.b #23	ENSGT00940000162718 #27	ENSGT00940000167338	ENSGT00940000157300 #29	ENSGT00940000154334 #28	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013
Spotted gar	MODERN SPECIES	655	lmo7a (ENSLOCG00000011412)	uchl3 (ENSLOCG00000011397)	COMMD6 (ENSLOCG00000011386)	TBC1D4 (ENSLOCG00000011360)	klf12b (ENSLOCG00000011354)	KLF5 (ENSLOCG00000011350)	ENSLOCG00000017807	pibf1 (ENSLOCG00000011336)	DIS3 (ENSLOCG00000011319)	bora (ENSLOCG00000011308)	mzt1 (ENSLOCG00000011295)	dachd (ENSLOCG00000011274)	KLHL1 (ENSLOCG00000011264)	SLC22A15 (ENSLOCG00000011254) #19	mab21l3 (ENSLOCG00000011250) #20	atp1a1a.2 (ENSLOCG00000011221) #22	ENSLOCG00000011218	ENSLOCG00000011214	ENSLOCG00000011206	ENSLOCG00000011199 ##23	PTGFRN (ENSLOCG00000011186) #25	igsf3l (ENSLOCG00000011168) ##23	igsf3 (ENSLOCG00000011156) #23	ENSLOCG00000011128	ENSLOCG00000011115 #29	TRIM45 (ENSLOCG00000011099) #28	man1a2 (ENSLOCG00000011087) #30	tent5c (ENSLOCG00000017806) #31	gdap2 (ENSLOCG00000011071)	wdr3 (ENSLOCG00000011052)	ENSLOCG00000011043
Osteoglossocephalai	ANCESTRAL SPECIES	143															ENSGT01050000244827.B #20	ENSGT00940000154840.b #22	ENSGT00610000086518	ENSGT00990000204406	ENSGT01030000238120	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000155177.a ##23	ENSGT00940000155177.b #23	ENSGT00940000164746	ENSGT00940000157300 #29	ENSGT00940000154334 #28	ENSGT00940000157498 #30	ENSGT00940000158856 #31	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	364							ENSGT00720000109997	ENSGT00940000157860.q	ENSGT00730000111141	ENSGT00390000000447	ENSGT00940000159602	ENSGT00940000159870.e	ENSGT00940000154497.A	ENSGT01030000234765	ENSGT00940000154840.b.c.b #22	ENSGT00940000154840.b.c.a #22	ENSGT00610000086518	ENSGT00990000204406	ENSGT01030000238120
P. kingsleyae	MODERN SPECIES	560																ATP1A1 (ENSPKIG00000002036) #22	ENSPKIG00000002083	ATP1A1 (ENSPKIG00000002116) #22	ENSPKIG00000002149	ENSPKIG00000002170	ENSPKIG00000002202	ENSPKIG00000002243
Asian bonytongue	MODERN SPECIES	5	ENSSFOG00015015902	ENSSFOG00015031552	ENSSFOG00015016010	cyyr1 (ENSSFOG00015016068)	ADAMTS1 (ENSSFOG00015027602)	ENSSFOG00015029109	ncam2 (ENSSFOG00015016108)	sona (ENSSFOG00015016148)	DONSON (ENSSFOG00015016192)	ENSSFOG00015025979	ENSSFOG00015016275	RCAN1 (ENSSFOG00015027430)	KCNE1 (ENSSFOG00015029408)	ENSSFOG00015016348	ATP1A1 (ENSSFOG00015009622) #22	ATP1A1 (ENSSFOG00015016430) #22	ENSSFOG00015024557	satb2 (ENSSFOG00015026602)	si:ch211-93g23.2 (ENSSFOG00015018587)	ube2f (ENSSFOG00015018547)	ramp1 (ENSSFOG00015018531)	ENSSFOG00015018462	ENSSFOG00015025512	ENSSFOG00015023310	ENSSFOG00015027617	ENSSFOG00015024451	ENSSFOG00015029738	ENSSFOG00015029328	MYO1B (ENSSFOG00015017799)	pofut2 (ENSSFOG00015017724)	ENSSFOG00015017681
Osteoglossiformes	ANCESTRAL SPECIES	364												ENSGT01030000238120	ENSGT00990000204406	ENSGT00610000086518	ENSGT00940000154840.b.c.a #22	ENSGT00940000154840.b.c.b #22	ENSGT01030000234765	ENSGT00940000154497.A	ENSGT00940000159870.e	ENSGT00940000159602	ENSGT00390000000447	ENSGT00730000111141	ENSGT00940000157860.q	ENSGT00720000109997
Asian bonytongue	MODERN SPECIES	5	pofut2 (ENSSFOG00015017724)	MYO1B (ENSSFOG00015017799)	ENSSFOG00015029328	ENSSFOG00015029738	ENSSFOG00015024451	ENSSFOG00015027617	ENSSFOG00015023310	ENSSFOG00015025512	ENSSFOG00015018462	ramp1 (ENSSFOG00015018531)	ube2f (ENSSFOG00015018547)	si:ch211-93g23.2 (ENSSFOG00015018587)	satb2 (ENSSFOG00015026602)	ENSSFOG00015024557	ATP1A1 (ENSSFOG00015016430) #22	ATP1A1 (ENSSFOG00015009622) #22	ENSSFOG00015016348	KCNE1 (ENSSFOG00015029408)	RCAN1 (ENSSFOG00015027430)	ENSSFOG00015016275	ENSSFOG00015025979	DONSON (ENSSFOG00015016192)	sona (ENSSFOG00015016148)	ncam2 (ENSSFOG00015016108)	ENSSFOG00015029109	ADAMTS1 (ENSSFOG00015027602)	cyyr1 (ENSSFOG00015016068)	ENSSFOG00015016010	ENSSFOG00015031552	ENSSFOG00015015902	ENSSFOG00015015887
P. kingsleyae	MODERN SPECIES	560														ATP1A1 (ENSPKIG00000002036) #22	ENSPKIG00000002083	ATP1A1 (ENSPKIG00000002116) #22	ENSPKIG00000002149	ENSPKIG00000002170	ENSPKIG00000002202	ENSPKIG00000002243
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	88	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000167257.a	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.r	ENSGT00940000166048.a.b	ENSGT00940000159255	ENSGT00940000159870.f	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT00940000154840.b.d.b #22	ENSGT01090000260459	ENSGT00940000154840.b.d.a #22	ENSGT00940000158367.c #25	ENSGT00940000155177.b.g #23	ENSGT00940000164746	ENSGT00940000157498.h #30	ENSGT00940000158856.h #31
Asian bonytongue	MODERN SPECIES	3	appb (ENSSFOG00015008854)	cyyr1 (ENSSFOG00015008961)	ADAMTS1 (ENSSFOG00015032932)	ADAMTS5 (ENSSFOG00015031640)	n6amt1 (ENSSFOG00015009049)	gart (ENSSFOG00015009090)	NCAM2 (ENSSFOG00015009238)	ENSSFOG00015009350	runx1 (ENSSFOG00015031091)	RCAN1 (ENSSFOG00015009442)	dnajc28 (ENSSFOG00015028973)	mab21l3 (ENSSFOG00015009473) #20	ENSSFOG00015009573	ENSSFOG00015009535 #22	ENSSFOG00015013249	ATP1A1 (ENSSFOG00015016357) #22	PTGFRN (ENSSFOG00015009688) #25	igsf3 (ENSSFOG00015009704) #23	man1a2 (ENSSFOG00015009725) #30	ENSSFOG00015009772	hsd3b2 (ENSSFOG00015009830)	ENSSFOG00015009841	cryl1 (ENSSFOG00015009909)	ARGLU1 (ENSSFOG00015009954)	efnb2b (ENSSFOG00015009976)	ENSSFOG00015010004	stxbp5l (ENSSFOG00015010031)	gtf2e1 (ENSSFOG00015032884)	rabl3 (ENSSFOG00015026243)	ENSSFOG00015025175	ercc1 (ENSSFOG00015010514)
P. kingsleyae	MODERN SPECIES	107	jam2a (ENSPKIG00000010412)	gabpa (ENSPKIG00000010493)	appb (ENSPKIG00000010598)	cyyr1 (ENSPKIG00000010721)	ADAMTS1 (ENSPKIG00000010736)	ADAMTS5 (ENSPKIG00000010769)	n6amt1 (ENSPKIG00000010822)	gart (ENSPKIG00000010876)	ncam2 (ENSPKIG00000010979)	ENSPKIG00000011114	runx1 (ENSPKIG00000011181)	ENSPKIG00000011262	dnajc28 (ENSPKIG00000011289)	mab21l3 (ENSPKIG00000011309) #20	ENSPKIG00000011363 #22	ENSPKIG00000011471 #22	ENSPKIG00000011571	ENSPKIG00000011590 #25	igsf3 (ENSPKIG00000011623) #23	ENSPKIG00000011691	man1a2 (ENSPKIG00000011753) #30	tent5c (ENSPKIG00000011797) #31	ENSPKIG00000011810	tbx15 (ENSPKIG00000011827)
Osteoglossiformes	ANCESTRAL SPECIES	88	ENSGT00940000156271	ENSGT00940000165208.c	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000167257.a	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.r	ENSGT00940000166048.a.b	ENSGT00940000159255	ENSGT00940000159870.f	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT00940000154840.b.d.b #22	ENSGT01090000260459	ENSGT00940000154840.b.d.a #22	ENSGT00940000158367.c #25	ENSGT00940000155177.b.g #23	ENSGT00940000164746	ENSGT00940000157498.h #30	ENSGT00940000158856.h #31
Asian bonytongue	MODERN SPECIES	3	jam2a (ENSSFOG00015026401)	gabpa (ENSSFOG00015008813)	appb (ENSSFOG00015008854)	cyyr1 (ENSSFOG00015008961)	ADAMTS1 (ENSSFOG00015032932)	ADAMTS5 (ENSSFOG00015031640)	n6amt1 (ENSSFOG00015009049)	gart (ENSSFOG00015009090)	NCAM2 (ENSSFOG00015009238)	ENSSFOG00015009350	runx1 (ENSSFOG00015031091)	RCAN1 (ENSSFOG00015009442)	dnajc28 (ENSSFOG00015028973)	mab21l3 (ENSSFOG00015009473) #20	ENSSFOG00015009573	ENSSFOG00015009535 #22	ENSSFOG00015013249	ATP1A1 (ENSSFOG00015016357) #22	PTGFRN (ENSSFOG00015009688) #25	igsf3 (ENSSFOG00015009704) #23	man1a2 (ENSSFOG00015009725) #30	ENSSFOG00015009772	hsd3b2 (ENSSFOG00015009830)	ENSSFOG00015009841	cryl1 (ENSSFOG00015009909)	ARGLU1 (ENSSFOG00015009954)	efnb2b (ENSSFOG00015009976)	ENSSFOG00015010004	stxbp5l (ENSSFOG00015010031)	gtf2e1 (ENSSFOG00015032884)	rabl3 (ENSSFOG00015026243)
P. kingsleyae	MODERN SPECIES	107	mrpl39 (ENSPKIG00000010371)	jam2a (ENSPKIG00000010412)	gabpa (ENSPKIG00000010493)	appb (ENSPKIG00000010598)	cyyr1 (ENSPKIG00000010721)	ADAMTS1 (ENSPKIG00000010736)	ADAMTS5 (ENSPKIG00000010769)	n6amt1 (ENSPKIG00000010822)	gart (ENSPKIG00000010876)	ncam2 (ENSPKIG00000010979)	ENSPKIG00000011114	runx1 (ENSPKIG00000011181)	ENSPKIG00000011262	dnajc28 (ENSPKIG00000011289)	mab21l3 (ENSPKIG00000011309) #20	ENSPKIG00000011363 #22	ENSPKIG00000011471 #22	ENSPKIG00000011571	ENSPKIG00000011590 #25	igsf3 (ENSPKIG00000011623) #23	ENSPKIG00000011691	man1a2 (ENSPKIG00000011753) #30	tent5c (ENSPKIG00000011797) #31	ENSPKIG00000011810	tbx15 (ENSPKIG00000011827)
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	278		ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00990000207892	ENSGT00940000166048.a.b	ENSGT00730000111141	ENSGT00390000000447	ENSGT00940000172034	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01030000234765	ENSGT00940000154840.b.e.a #22	ENSGT00610000086518	ENSGT00990000204406	ENSGT01030000238120	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161679.b
Otomorpha	DUPLICATION
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	234						ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT00940000160718	ENSGT00940000159810	ENSGT00950000183055.a.a	ENSGT00390000012721.b
Otophysi	ANCESTRAL SPECIES	45	ENSGT00940000157453.s	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00720000109997	ENSGT00940000157860.p	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260459	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055	ENSGT00530000062962.a.a	ENSGT00940000158054.d
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Channel catfish	MODERN SPECIES	18	ENSIPUG00000007052	gart (ENSIPUG00000007090)	son (ENSIPUG00000007155)	donson (ENSIPUG00000007176)	runx1 (ENSIPUG00000007191)	urp2 (ENSIPUG00000007224)	ENSIPUG00000007247	ENSIPUG00000007261	ENSIPUG00000007266	ENSIPUG00000007277 #22	ENSIPUG00000007349 #22	ENSIPUG00000007416 #22	ENSIPUG00000007466	ENSIPUG00000007484 #22	ENSIPUG00000007535	atp1a1a.1 (ENSIPUG00000007549) #22	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711 #25	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)	ENSIPUG00000009359	cnpy3 (ENSIPUG00000009378)	ENSIPUG00000009405	spry2 (ENSIPUG00000009437)	n6amt1 (ENSIPUG00000009452)	Ndfip2 (ENSIPUG00000009529)
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Electric eel	MODERN SPECIES	308					ENSEEEG00000014332	ENSEEEG00000014331	DONSON (ENSEEEG00000014329)	runx1 (ENSEEEG00000014327)	ENSEEEG00000014326	ENSEEEG00000014325	ENSEEEG00000014324	ENSEEEG00000014323	ENSEEEG00000010023 #22	ENSEEEG00000009365 #22	ENSEEEG00000009344	atp1a1a.1 (ENSEEEG00000001193) #22
Characoidei	ANCESTRAL SPECIES	42	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT00940000154840.b.e.a.a.a.b #22	ENSGT00940000154840.b.e.a.a.a.a #22
Red-bellied piranha	MODERN SPECIES	78	ENSPNAG00000010013	ENSPNAG00000009991	DONSON (ENSPNAG00000001357)	runx1 (ENSPNAG00000009945)	ENSPNAG00000009912	urp2 (ENSPNAG00000009899)	ENSPNAG00000009884	RCAN1 (ENSPNAG00000009852)	ENSPNAG00000009797	ATP1A1 (ENSPNAG00000009768) #22	ENSPNAG00000009706 #22	ENSPNAG00000009644 #22	ENSPNAG00000009586	ENSPNAG00000009560 #22	ENSPNAG00000009497	atp1a1a.1 (ENSPNAG00000009478) #22	ENSPNAG00000009429
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000030626	ENSAMXG00000037069	ENSAMXG00000030353	ENSAMXG00000038259	DONSON (ENSAMXG00000043405)	runx1 (ENSAMXG00000039960)	ENSAMXG00000038538	urp2 (ENSAMXG00000004143)	ENSAMXG00000033998	ENSAMXG00000029891	ENSAMXG00000033135	ENSAMXG00000042461	ATP1A1 (ENSAMXG00000002883) #22	ENSAMXG00000004129 #22	ENSAMXG00000012162 #22	ENSAMXG00000034255 #22	atp1a1a.1 (ENSAMXG00000029963) #22	ENSAMXG00000040380	ENSAMXG00000033272	ENSAMXG00000035368	ENSAMXG00000039945	ENSAMXG00000002795	ENSAMXG00000036133	ENSAMXG00000035451	ENSAMXG00000002815	ENSAMXG00000002774	ENSAMXG00000031719	ENSAMXG00000032848	ENSAMXG00000037516	ENSAMXG00000002835	ERBB4 (ENSAMXG00000002862)
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000154840.b.e.a.a.a.b #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000154840.b.e.a.a.a.b #22
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT00940000154840.b.e.a.a.a.b #22	ENSGT00940000154840.b.e.a.a.a.a #22
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000037069	ENSAMXG00000030353	ENSAMXG00000038259	DONSON (ENSAMXG00000043405)	runx1 (ENSAMXG00000039960)	ENSAMXG00000038538	urp2 (ENSAMXG00000004143)	ENSAMXG00000033998	ENSAMXG00000029891	ENSAMXG00000033135	ENSAMXG00000042461	ATP1A1 (ENSAMXG00000002883) #22	ENSAMXG00000004129 #22	ENSAMXG00000012162 #22	ENSAMXG00000034255 #22	atp1a1a.1 (ENSAMXG00000029963) #22	ENSAMXG00000040380	ENSAMXG00000033272	ENSAMXG00000035368	ENSAMXG00000039945	ENSAMXG00000002795	ENSAMXG00000036133	ENSAMXG00000035451	ENSAMXG00000002815	ENSAMXG00000002774	ENSAMXG00000031719	ENSAMXG00000032848	ENSAMXG00000037516	ENSAMXG00000002835	ERBB4 (ENSAMXG00000002862)	ENSAMXG00000043194
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602.e	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.c #22	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906	ENSGT00980000200000	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	119	ENSGT00390000008902.jb.b	ENSGT00530000063252.a.b.a.a.c	ENSGT00940000167257.c	ENSGT00940000156815.c	ENSGT00940000159090.d	ENSGT00940000163827.b	ENSGT00390000013073.g	ENSGT00390000000292.B.q	ENSGT00730000111141.hb.a	ENSGT00390000000447.o	ENSGT00940000159255.d	ENSGT01100000263672.a	ENSGT00940000159602.e.a	ENSGT00940000159870.k.b	ENSGT01030000234765.d	ENSGT00940000154840.b.e.a.a.a.c #22	ENSGT00980000200000.b	ENSGT00940000158367.e.d #25	ENSGT00940000161679.b.a	ENSGT01030000234621.F.c.i	ENSGT00950000182897.B.a.b.b.b.f	ENSGT00940000160594.g.b.b.b	ENSGT00940000155502.t	ENSGT00940000155318.b.b.b	ENSGT00390000010543.l	ENSGT01050000244897.a.b.b.a.b.b	ENSGT01050000244955.a.a.j	ENSGT00940000158453.a.f	ENSGT00940000160718.d	ENSGT00940000159810.d	ENSGT00950000183055.a.a.f
Cyprininae_a	ANCESTRAL SPECIES	125	ENSGT00390000008902.jb.b	ENSGT00530000063252.a.b.a.a.c	ENSGT00940000167257.c	ENSGT00940000156815.c	ENSGT00940000159090.d	ENSGT00940000163827.b	ENSGT00390000013073.g	ENSGT00390000000292.B.q	ENSGT00730000111141.hb.a	ENSGT00390000000447.o	ENSGT00940000159255.d	ENSGT01100000263672.a	ENSGT00940000159602.e.a	ENSGT00940000159870.k.b	ENSGT01030000234765.d	ENSGT00940000154840.b.e.a.a.a.c #22	ENSGT00980000200000.b	ENSGT00940000158367.e.d #25	ENSGT00940000161679.b.a	ENSGT01030000234621.F.c.i	ENSGT00950000182897.B.a.b.b.b.f	ENSGT00940000160594.g.b.b.b	ENSGT00940000155502.t	ENSGT00940000155318.b.b.b	ENSGT00390000010543.l	ENSGT01050000244897.a.b.b.a.b.b	ENSGT01050000244955.a.a.j	ENSGT00940000158453.a.f	ENSGT00940000160718.d	ENSGT00940000159810.d	ENSGT00950000183055.a.a.f
Golden-line barbel	MODERN SPECIES	1276											urp2 (ENSSGRG00000050516)	ENSSGRG00000050416	ENSSGRG00000050412	atp1a1a.4 (ENSSGRG00000050408) #22	ENSSGRG00000050406	atp1a1a.1 (ENSSGRG00000041590) #22
Common carp reference	MODERN SPECIES	22	ENSCCRG00000077027	ENSCCRG00000068748	ENSCCRG00000026134	ENSCCRG00000077599	ENSCCRG00000005735	ENSCCRG00000045487	ENSCCRG00000058365	ENSCCRG00000057640	DONSON (ENSCCRG00000033892)	runx1 (ENSCCRG00000010272)	ENSCCRG00000074524	urp2 (ENSCCRG00000008939)	ENSCCRG00000058217	ENSCCRG00000063571	ENSCCRG00000022238	atp1a1a.1 (ENSCCRG00000047364) #22	ENSCCRG00000079575	ENSCCRG00000044098	ENSCCRG00000065938 #25	slc5a3a (ENSCCRG00000001278)	ENSCCRG00000081604	OXGR1 (ENSCCRG00000081304)	mbnl2 (ENSCCRG00000001118)	rap2ab (ENSCCRG00000076162)	kpnb3 (ENSCCRG00000015685)	FARP1 (ENSCCRG00000045516)	ENSCCRG00000077121	ENSCCRG00000068661	ENSCCRG00000064822	gpc6a (ENSCCRG00000055251)	gpc5a (ENSCCRG00000023242)
Cyprininae	ANCESTRAL SPECIES	610								ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT00990000209906.a.b	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.b
Goldfish	MODERN SPECIES	18	GGACT (ENSCARG00000069805)	ENSCARG00000069809	ENSCARG00000069811	ENSCARG00000069816	ENSCARG00000069820	ENSCARG00000069822	ENSCARG00000069824	ENSCARG00000069826	ENSCARG00000069830	runx1 (ENSCARG00000069840)	urp2 (ENSCARG00000069859)	ENSCARG00000069860	ENSCARG00000069863	ENSCARG00000069864	atp1a1a.4 (ENSCARG00000069866) #22	atp1a1a.1 (ENSCARG00000069890) #22	ENSCARG00000069966	ENSCARG00000069976	ENSCARG00000069981	ENSCARG00000069988	ENSCARG00000069985	atp1a1a.3 (ENSCARG00000069992) #22	atp1a1a.2 (ENSCARG00000069999) #22	ENSCARG00000070018	SLITRK1 (ENSCARG00000070020)	slitrk6 (ENSCARG00000070021)	SLITRK5 (ENSCARG00000070023)	gpc5a (ENSCARG00000070030)	gpc6a (ENSCARG00000070041)	pard3ba (ENSCARG00000070049)	abcb6a (ENSCARG00000070059)
Cyprininae_a	ANCESTRAL SPECIES	158								ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.b	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.a.b.b.b	ENSGT00990000209906.b	ENSGT00980000200000.a.b	ENSGT00940000158367.e.c #25	ENSGT00940000161679.b.b	ENSGT01030000234621.F.c.j	ENSGT00950000182897.B.a.b.b.b.e	ENSGT00940000160594.g.b.b.a	ENSGT00940000155502.s
Common carp reference	MODERN SPECIES	27	jam2a (ENSCCRG00000072838)	atp5pf (ENSCCRG00000066402)	APP (ENSCCRG00000021887)	cyyr1 (ENSCCRG00000082869)	ADAMTS1 (ENSCCRG00000041650)	ADAMTS5 (ENSCCRG00000031430)	n6amt1 (ENSCCRG00000037795)	gart (ENSCCRG00000081314)	ENSCCRG00000053234	ENSCCRG00000040967	runx1 (ENSCCRG00000061572)	urp2 (ENSCCRG00000065744)	ENSCCRG00000008937	ENSCCRG00000068422	ENSCCRG00000008933	atp1a1a.1 (ENSCCRG00000041328) #22	ENSCCRG00000047294	ENSCCRG00000061258	atp1a1a.3 (ENSCCRG00000047297) #22	ENSCCRG00000071944	ENSCCRG00000045341	ENSCCRG00000071466	ENSCCRG00000042977	ENSCCRG00000080429	ENSCCRG00000042961	ENSCCRG00000001284 #25	slc5a3a (ENSCCRG00000057022)	OXGR1 (ENSCCRG00000071030)	mbnl2 (ENSCCRG00000015564)	rap2ab (ENSCCRG00000021398)	kpnb3 (ENSCCRG00000022839)
Golden-line barbel	MODERN SPECIES	527						ENSSGRG00000053301	ENSSGRG00000053300	DONSON (ENSSGRG00000053299)	runx1 (ENSSGRG00000053296)	urp2 (ENSSGRG00000053293)	ENSSGRG00000053292	ENSSGRG00000053291	ENSSGRG00000053289	atp1a1a.4 (ENSSGRG00000053207) #22	ENSSGRG00000053183	atp1a1a.1 (ENSSGRG00000047209) #22	atp1a1a.2 (ENSSGRG00000046780) #22	ENSSGRG00000046763	atp1a1a.3 (ENSSGRG00000046078) #22	ENSSGRG00000045517	ENSSGRG00000045516	ENSSGRG00000045515	ENSSGRG00000045514	ENSSGRG00000045513	ENSSGRG00000045508 #25	slc5a3a (ENSSGRG00000045506)	mbnl2 (ENSSGRG00000045500)	rap2ab (ENSSGRG00000045494)	kpnb3 (ENSSGRG00000045478)
Zebrafish	MODERN SPECIES		mrpl16 (ENSDARG00000075325)	mrpl39 (ENSDARG00000041570)	ENSDARG00000113329	jam2a (ENSDARG00000058996)	atp5pf (ENSDARG00000014313)	appa (ENSDARG00000104279)	cyyr1 (ENSDARG00000103783)	ADAMTS1 (ENSDARG00000103519)	adamts5 (ENSDARG00000100307)	gart (ENSDARG00000101089)	n6amt1 (ENSDARG00000115421)	runx1 (ENSDARG00000087646)	urp2 (ENSDARG00000067781)	ENSDARG00000099108	atp1a1a.4 (ENSDARG00000001870) #22	atp1a1a.1 (ENSDARG00000002791) #22	atp1a1a.2 (ENSDARG00000007739) #22	atp1a1a.3 (ENSDARG00000039131) #22	atp1a1a.5 (ENSDARG00000040252) #22	ENSDARG00000089477	ENSDARG00000093102	ENSDARG00000095102	ENSDARG00000040250	ENSDARG00000075505 #25	slc5a3a (ENSDARG00000010376)	oxgr1a.1 (ENSDARG00000033684)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.2 (ENSDARG00000078743)	mbnl2 (ENSDARG00000018460)	rap2ab (ENSDARG00000040246)	kpnb3 (ENSDARG00000040245)
Otomorpha	ANCESTRAL SPECIES	234								ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT00940000160718	ENSGT00940000159810
Otophysi	ANCESTRAL SPECIES	60	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b #22	ENSGT01090000260564	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT00940000160718	ENSGT00940000159810	ENSGT00950000183055.a.a
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT00940000154840.b.e.a.a.a.b #22	ENSGT00940000154840.b.e.a.a.a.a #22
Red-bellied piranha	MODERN SPECIES	78	ADAMTS5 (ENSPNAG00000010236)	ENSPNAG00000001374	ENSPNAG00000010186	n6amt1 (ENSPNAG00000010171)	gart (ENSPNAG00000010137)	NCAM2 (ENSPNAG00000010052)	ENSPNAG00000010013	ENSPNAG00000009991	DONSON (ENSPNAG00000001357)	runx1 (ENSPNAG00000009945)	ENSPNAG00000009912	urp2 (ENSPNAG00000009899)	ENSPNAG00000009884	RCAN1 (ENSPNAG00000009852)	ENSPNAG00000009797	ATP1A1 (ENSPNAG00000009768) #22	ENSPNAG00000009706 #22	ENSPNAG00000009644 #22	ENSPNAG00000009586	ENSPNAG00000009560 #22	ENSPNAG00000009497	atp1a1a.1 (ENSPNAG00000009478) #22	ENSPNAG00000009429
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000034482	NCAM2 (ENSAMXG00000017006)	ENSAMXG00000038047	ENSAMXG00000030626	ENSAMXG00000037069	ENSAMXG00000030353	ENSAMXG00000038259	DONSON (ENSAMXG00000043405)	runx1 (ENSAMXG00000039960)	ENSAMXG00000038538	urp2 (ENSAMXG00000004143)	ENSAMXG00000033998	ENSAMXG00000029891	ENSAMXG00000033135	ENSAMXG00000042461	ATP1A1 (ENSAMXG00000002883) #22	ENSAMXG00000004129 #22	ENSAMXG00000012162 #22	ENSAMXG00000034255 #22	atp1a1a.1 (ENSAMXG00000029963) #22	ENSAMXG00000040380	ENSAMXG00000033272	ENSAMXG00000035368	ENSAMXG00000039945	ENSAMXG00000002795	ENSAMXG00000036133	ENSAMXG00000035451	ENSAMXG00000002815	ENSAMXG00000002774	ENSAMXG00000031719	ENSAMXG00000032848
Channel catfish	MODERN SPECIES	18	ERBB4 (ENSIPUG00000006935)	ENSIPUG00000006986	ENSIPUG00000007002	ENSIPUG00000007007	ENSIPUG00000007017	ENSIPUG00000007026	ENSIPUG00000007052	gart (ENSIPUG00000007090)	son (ENSIPUG00000007155)	donson (ENSIPUG00000007176)	runx1 (ENSIPUG00000007191)	urp2 (ENSIPUG00000007224)	ENSIPUG00000007247	ENSIPUG00000007261	ENSIPUG00000007266	ENSIPUG00000007277 #22	ENSIPUG00000007349 #22	ENSIPUG00000007416 #22	ENSIPUG00000007466	ENSIPUG00000007484 #22	ENSIPUG00000007535	atp1a1a.1 (ENSIPUG00000007549) #22	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711 #25	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)
Characiphysae	DUPLICATION
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT00940000154840.b.e.a.a.a.b #22	ENSGT00940000154840.b.e.a.a.a.a #22
Red-bellied piranha	MODERN SPECIES	78	ENSPNAG00000010186	n6amt1 (ENSPNAG00000010171)	gart (ENSPNAG00000010137)	NCAM2 (ENSPNAG00000010052)	ENSPNAG00000010013	ENSPNAG00000009991	DONSON (ENSPNAG00000001357)	runx1 (ENSPNAG00000009945)	ENSPNAG00000009912	urp2 (ENSPNAG00000009899)	ENSPNAG00000009884	RCAN1 (ENSPNAG00000009852)	ENSPNAG00000009797	ATP1A1 (ENSPNAG00000009768) #22	ENSPNAG00000009706 #22	ENSPNAG00000009644 #22	ENSPNAG00000009586	ENSPNAG00000009560 #22	ENSPNAG00000009497	atp1a1a.1 (ENSPNAG00000009478) #22	ENSPNAG00000009429
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000038047	ENSAMXG00000030626	ENSAMXG00000037069	ENSAMXG00000030353	ENSAMXG00000038259	DONSON (ENSAMXG00000043405)	runx1 (ENSAMXG00000039960)	ENSAMXG00000038538	urp2 (ENSAMXG00000004143)	ENSAMXG00000033998	ENSAMXG00000029891	ENSAMXG00000033135	ENSAMXG00000042461	ATP1A1 (ENSAMXG00000002883) #22	ENSAMXG00000004129 #22	ENSAMXG00000012162 #22	ENSAMXG00000034255 #22	atp1a1a.1 (ENSAMXG00000029963) #22	ENSAMXG00000040380	ENSAMXG00000033272	ENSAMXG00000035368	ENSAMXG00000039945	ENSAMXG00000002795	ENSAMXG00000036133	ENSAMXG00000035451	ENSAMXG00000002815	ENSAMXG00000002774	ENSAMXG00000031719	ENSAMXG00000032848	ENSAMXG00000037516	ENSAMXG00000002835
Electric eel	MODERN SPECIES	308							ENSEEEG00000014332	ENSEEEG00000014331	DONSON (ENSEEEG00000014329)	runx1 (ENSEEEG00000014327)	ENSEEEG00000014326	ENSEEEG00000014325	ENSEEEG00000014324	ENSEEEG00000014323	ENSEEEG00000010023 #22	ENSEEEG00000009365 #22	ENSEEEG00000009344	atp1a1a.1 (ENSEEEG00000001193) #22
Channel catfish	MODERN SPECIES	18	ENSIPUG00000007002	ENSIPUG00000007007	ENSIPUG00000007017	ENSIPUG00000007026	ENSIPUG00000007052	gart (ENSIPUG00000007090)	son (ENSIPUG00000007155)	donson (ENSIPUG00000007176)	runx1 (ENSIPUG00000007191)	urp2 (ENSIPUG00000007224)	ENSIPUG00000007247	ENSIPUG00000007261	ENSIPUG00000007266	ENSIPUG00000007277 #22	ENSIPUG00000007349 #22	ENSIPUG00000007416 #22	ENSIPUG00000007466	ENSIPUG00000007484 #22	ENSIPUG00000007535	atp1a1a.1 (ENSIPUG00000007549) #22	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711 #25	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)	ENSIPUG00000009359	cnpy3 (ENSIPUG00000009378)
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00940000157453.s	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a
Characiphysae_b	ANCESTRAL SPECIES	60	ENSGT00940000157453.s	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a
Characoidei	ANCESTRAL SPECIES	1	ENSGT00940000157453.s	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a
Red-bellied piranha	MODERN SPECIES	78	gart (ENSPNAG00000010137)	NCAM2 (ENSPNAG00000010052)	ENSPNAG00000010013	ENSPNAG00000009991	DONSON (ENSPNAG00000001357)	runx1 (ENSPNAG00000009945)	ENSPNAG00000009912	urp2 (ENSPNAG00000009899)	ENSPNAG00000009884	RCAN1 (ENSPNAG00000009852)	ENSPNAG00000009797	ATP1A1 (ENSPNAG00000009768) #22	ENSPNAG00000009706 #22	ENSPNAG00000009644 #22	ENSPNAG00000009586	ENSPNAG00000009560 #22	ENSPNAG00000009497	atp1a1a.1 (ENSPNAG00000009478) #22	ENSPNAG00000009429
Channel catfish	MODERN SPECIES	18	ENSIPUG00000007017	ENSIPUG00000007026	ENSIPUG00000007052	gart (ENSIPUG00000007090)	son (ENSIPUG00000007155)	donson (ENSIPUG00000007176)	runx1 (ENSIPUG00000007191)	urp2 (ENSIPUG00000007224)	ENSIPUG00000007247	ENSIPUG00000007261	ENSIPUG00000007266	ENSIPUG00000007277 #22	ENSIPUG00000007349 #22	ENSIPUG00000007416 #22	ENSIPUG00000007466	ENSIPUG00000007484 #22	ENSIPUG00000007535	atp1a1a.1 (ENSIPUG00000007549) #22	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711 #25	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)	ENSIPUG00000009359	cnpy3 (ENSIPUG00000009378)	ENSIPUG00000009405	spry2 (ENSIPUG00000009437)
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT01100000263585	ENSGT00940000154840.b.e.a.a.a.a #22
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000156815	ENSGT00940000159090	ENSGT00940000163827.b	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00940000166048.a.b	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.a #22	ENSGT00940000154840.b.e.a.a.b.b.b #22	ENSGT00940000154840.b.e.a.a.b.b.a.a #22	ENSGT00940000154840.b.e.a.a.a.b #22	ENSGT00940000154840.b.e.a.a.a.a #22
Red-bellied piranha	MODERN SPECIES	78	ENSPNAG00000001374	ENSPNAG00000010186	n6amt1 (ENSPNAG00000010171)	gart (ENSPNAG00000010137)	NCAM2 (ENSPNAG00000010052)	ENSPNAG00000010013	ENSPNAG00000009991	DONSON (ENSPNAG00000001357)	runx1 (ENSPNAG00000009945)	ENSPNAG00000009912	urp2 (ENSPNAG00000009899)	ENSPNAG00000009884	RCAN1 (ENSPNAG00000009852)	ENSPNAG00000009797	ATP1A1 (ENSPNAG00000009768) #22	ENSPNAG00000009706 #22	ENSPNAG00000009644 #22	ENSPNAG00000009586	ENSPNAG00000009560 #22	ENSPNAG00000009497	atp1a1a.1 (ENSPNAG00000009478) #22	ENSPNAG00000009429
Mexicana tetra	MODERN SPECIES	3	NCAM2 (ENSAMXG00000017006)	ENSAMXG00000038047	ENSAMXG00000030626	ENSAMXG00000037069	ENSAMXG00000030353	ENSAMXG00000038259	DONSON (ENSAMXG00000043405)	runx1 (ENSAMXG00000039960)	ENSAMXG00000038538	urp2 (ENSAMXG00000004143)	ENSAMXG00000033998	ENSAMXG00000029891	ENSAMXG00000033135	ENSAMXG00000042461	ATP1A1 (ENSAMXG00000002883) #22	ENSAMXG00000004129 #22	ENSAMXG00000012162 #22	ENSAMXG00000034255 #22	atp1a1a.1 (ENSAMXG00000029963) #22	ENSAMXG00000040380	ENSAMXG00000033272	ENSAMXG00000035368	ENSAMXG00000039945	ENSAMXG00000002795	ENSAMXG00000036133	ENSAMXG00000035451	ENSAMXG00000002815	ENSAMXG00000002774	ENSAMXG00000031719	ENSAMXG00000032848	ENSAMXG00000037516
Electric eel	MODERN SPECIES	308								ENSEEEG00000014332	ENSEEEG00000014331	DONSON (ENSEEEG00000014329)	runx1 (ENSEEEG00000014327)	ENSEEEG00000014326	ENSEEEG00000014325	ENSEEEG00000014324	ENSEEEG00000014323	ENSEEEG00000010023 #22	ENSEEEG00000009365 #22	ENSEEEG00000009344	atp1a1a.1 (ENSEEEG00000001193) #22
Channel catfish	MODERN SPECIES	18	ENSIPUG00000006986	ENSIPUG00000007002	ENSIPUG00000007007	ENSIPUG00000007017	ENSIPUG00000007026	ENSIPUG00000007052	gart (ENSIPUG00000007090)	son (ENSIPUG00000007155)	donson (ENSIPUG00000007176)	runx1 (ENSIPUG00000007191)	urp2 (ENSIPUG00000007224)	ENSIPUG00000007247	ENSIPUG00000007261	ENSIPUG00000007266	ENSIPUG00000007277 #22	ENSIPUG00000007349 #22	ENSIPUG00000007416 #22	ENSIPUG00000007466	ENSIPUG00000007484 #22	ENSIPUG00000007535	atp1a1a.1 (ENSIPUG00000007549) #22	kpnb3 (ENSIPUG00000007628)	ENSIPUG00000007711 #25	brat1 (ENSIPUG00000007734)	dmd (ENSIPUG00000007857)	ENSIPUG00000009051	knstrn (ENSIPUG00000009181)	ENSIPUG00000009211	atnb233 (ENSIPUG00000009292)	mpc2a (ENSIPUG00000009323)	ENSIPUG00000009359
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00530000063252.a.b.a.a	ENSGT00940000167257	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602.e	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.c #22	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906	ENSGT00980000200000	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	610									ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT00990000209906.a.b	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3150																atp1a1a.4 (ENSCARG00000057640) #22
Goldfish	MODERN SPECIES	18	FARP1 (ENSCARG00000069717)	GGACT (ENSCARG00000069805)	ENSCARG00000069809	ENSCARG00000069811	ENSCARG00000069816	ENSCARG00000069820	ENSCARG00000069822	ENSCARG00000069824	ENSCARG00000069826	ENSCARG00000069830	runx1 (ENSCARG00000069840)	urp2 (ENSCARG00000069859)	ENSCARG00000069860	ENSCARG00000069863	ENSCARG00000069864	atp1a1a.4 (ENSCARG00000069866) #22	atp1a1a.1 (ENSCARG00000069890) #22	ENSCARG00000069966	ENSCARG00000069976	ENSCARG00000069981	ENSCARG00000069988	ENSCARG00000069985	atp1a1a.3 (ENSCARG00000069992) #22	atp1a1a.2 (ENSCARG00000069999) #22	ENSCARG00000070018	SLITRK1 (ENSCARG00000070020)	slitrk6 (ENSCARG00000070021)	SLITRK5 (ENSCARG00000070023)	gpc5a (ENSCARG00000070030)	gpc6a (ENSCARG00000070041)	pard3ba (ENSCARG00000070049)
Cyprininae_a	ANCESTRAL SPECIES	158									ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.b	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.a.b.b.b	ENSGT00990000209906.b	ENSGT00980000200000.a.b	ENSGT00940000158367.e.c #25	ENSGT00940000161679.b.b	ENSGT01030000234621.F.c.j	ENSGT00950000182897.B.a.b.b.b.e	ENSGT00940000160594.g.b.b.a
Golden-line barbel	MODERN SPECIES	527								ENSSGRG00000053301	ENSSGRG00000053300	DONSON (ENSSGRG00000053299)	runx1 (ENSSGRG00000053296)	urp2 (ENSSGRG00000053293)	ENSSGRG00000053292	ENSSGRG00000053291	ENSSGRG00000053289	atp1a1a.4 (ENSSGRG00000053207) #22	ENSSGRG00000053183	atp1a1a.1 (ENSSGRG00000047209) #22	atp1a1a.2 (ENSSGRG00000046780) #22	ENSSGRG00000046763	atp1a1a.3 (ENSSGRG00000046078) #22	ENSSGRG00000045517	ENSSGRG00000045516	ENSSGRG00000045515	ENSSGRG00000045514	ENSSGRG00000045513	ENSSGRG00000045508 #25	slc5a3a (ENSSGRG00000045506)	mbnl2 (ENSSGRG00000045500)	rap2ab (ENSSGRG00000045494)	kpnb3 (ENSSGRG00000045478)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154840.b.e.a.a.b.c.b #22
Goldfish	MODERN SPECIES		ENSCARG00000059596	ndfip2 (ENSCARG00000059625)	ENSCARG00000059641	ENSCARG00000059651	spry2 (ENSCARG00000059657)	ENSCARG00000059669	ENSCARG00000059678	ENSCARG00000059691	ENSCARG00000059721	DONSON (ENSCARG00000059762)	runx1 (ENSCARG00000059816)	ENSCARG00000060293	urp2 (ENSCARG00000060303)	RCAN1 (ENSCARG00000060311)	ENSCARG00000060325	atp1a1a.4 (ENSCARG00000060353) #22	ENSCARG00000060886	ENSCARG00000060910	ENSCARG00000060936 #25	slc5a3a (ENSCARG00000061071)	ENSCARG00000061076	ENSCARG00000061089	mbnl2 (ENSCARG00000061198)	rap2ab (ENSCARG00000061355)	kpnb3 (ENSCARG00000061440)	FARP1 (ENSCARG00000061791)	GGACT (ENSCARG00000063193)	ENSCARG00000063199	ENSCARG00000063209	gpc6a (ENSCARG00000063221)	gpc5a (ENSCARG00000063412)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154840.b.e.a.a.b.c.b #22
Golden-line barbel	MODERN SPECIES	1276													urp2 (ENSSGRG00000050516)	ENSSGRG00000050416	ENSSGRG00000050412	atp1a1a.4 (ENSSGRG00000050408) #22	ENSSGRG00000050406	atp1a1a.1 (ENSSGRG00000041590) #22
Zebrafish	MODERN SPECIES		si:ch73-41e3.7 (ENSDARG00000089799)	mrpl16 (ENSDARG00000075325)	mrpl39 (ENSDARG00000041570)	ENSDARG00000113329	jam2a (ENSDARG00000058996)	atp5pf (ENSDARG00000014313)	appa (ENSDARG00000104279)	cyyr1 (ENSDARG00000103783)	ADAMTS1 (ENSDARG00000103519)	adamts5 (ENSDARG00000100307)	gart (ENSDARG00000101089)	n6amt1 (ENSDARG00000115421)	runx1 (ENSDARG00000087646)	urp2 (ENSDARG00000067781)	ENSDARG00000099108	atp1a1a.4 (ENSDARG00000001870) #22	atp1a1a.1 (ENSDARG00000002791) #22	atp1a1a.2 (ENSDARG00000007739) #22	atp1a1a.3 (ENSDARG00000039131) #22	atp1a1a.5 (ENSDARG00000040252) #22	ENSDARG00000089477	ENSDARG00000093102	ENSDARG00000095102	ENSDARG00000040250	ENSDARG00000075505 #25	slc5a3a (ENSDARG00000010376)	oxgr1a.1 (ENSDARG00000033684)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.2 (ENSDARG00000078743)	mbnl2 (ENSDARG00000018460)	rap2ab (ENSDARG00000040246)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602.e	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.c #22	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906	ENSGT00980000200000	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000158453.a	ENSGT00940000160718	ENSGT00940000159810
Cyprininae	ANCESTRAL SPECIES	610			ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT00990000209906.a.b	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.b
Goldfish	MODERN SPECIES	18	gtf3c3 (ENSCARG00000070114)	ENSCARG00000070098	mdh1b (ENSCARG00000070090)	retreg2 (ENSCARG00000070085)	ENSCARG00000070078	cnppd1 (ENSCARG00000070074)	abcb6a (ENSCARG00000070059)	pard3ba (ENSCARG00000070049)	gpc6a (ENSCARG00000070041)	gpc5a (ENSCARG00000070030)	SLITRK5 (ENSCARG00000070023)	slitrk6 (ENSCARG00000070021)	SLITRK1 (ENSCARG00000070020)	ENSCARG00000070018	atp1a1a.2 (ENSCARG00000069999) #22	atp1a1a.3 (ENSCARG00000069992) #22	ENSCARG00000069985	ENSCARG00000069988	ENSCARG00000069981	ENSCARG00000069976	ENSCARG00000069966	atp1a1a.1 (ENSCARG00000069890) #22	atp1a1a.4 (ENSCARG00000069866) #22	ENSCARG00000069864	ENSCARG00000069863	ENSCARG00000069860	urp2 (ENSCARG00000069859)	runx1 (ENSCARG00000069840)	ENSCARG00000069830	ENSCARG00000069826	ENSCARG00000069824
Cyprininae_a	ANCESTRAL SPECIES	158				ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.b	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.a.b.b.b	ENSGT00990000209906.b	ENSGT00980000200000.a.b	ENSGT00940000158367.e.c #25	ENSGT00940000161679.b.b	ENSGT01030000234621.F.c.j	ENSGT00950000182897.B.a.b.b.b.e	ENSGT00940000160594.g.b.b.a	ENSGT00940000155502.s	ENSGT00940000155318.b.b.a	ENSGT00390000010543.k.a	ENSGT01050000244897.a.b.b.a.b.a	ENSGT01050000244955.a.a.i
Common carp reference	MODERN SPECIES	27	cyyr1 (ENSCCRG00000082869)	ADAMTS1 (ENSCCRG00000041650)	ADAMTS5 (ENSCCRG00000031430)	n6amt1 (ENSCCRG00000037795)	gart (ENSCCRG00000081314)	ENSCCRG00000053234	ENSCCRG00000040967	runx1 (ENSCCRG00000061572)	urp2 (ENSCCRG00000065744)	ENSCCRG00000008937	ENSCCRG00000068422	ENSCCRG00000008933	atp1a1a.1 (ENSCCRG00000041328) #22	ENSCCRG00000047294	ENSCCRG00000061258	atp1a1a.3 (ENSCCRG00000047297) #22	ENSCCRG00000071944	ENSCCRG00000045341	ENSCCRG00000071466	ENSCCRG00000042977	ENSCCRG00000080429	ENSCCRG00000042961	ENSCCRG00000001284 #25	slc5a3a (ENSCCRG00000057022)	OXGR1 (ENSCCRG00000071030)	mbnl2 (ENSCCRG00000015564)	rap2ab (ENSCCRG00000021398)	kpnb3 (ENSCCRG00000022839)	FARP1 (ENSCCRG00000066559)	ENSCCRG00000039024	gpc6a (ENSCCRG00000075847)
Golden-line barbel	MODERN SPECIES	527			ENSSGRG00000053301	ENSSGRG00000053300	DONSON (ENSSGRG00000053299)	runx1 (ENSSGRG00000053296)	urp2 (ENSSGRG00000053293)	ENSSGRG00000053292	ENSSGRG00000053291	ENSSGRG00000053289	atp1a1a.4 (ENSSGRG00000053207) #22	ENSSGRG00000053183	atp1a1a.1 (ENSSGRG00000047209) #22	atp1a1a.2 (ENSSGRG00000046780) #22	ENSSGRG00000046763	atp1a1a.3 (ENSSGRG00000046078) #22	ENSSGRG00000045517	ENSSGRG00000045516	ENSSGRG00000045515	ENSSGRG00000045514	ENSSGRG00000045513	ENSSGRG00000045508 #25	slc5a3a (ENSSGRG00000045506)	mbnl2 (ENSSGRG00000045500)	rap2ab (ENSSGRG00000045494)	kpnb3 (ENSSGRG00000045478)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES		ENSDARG00000113329	jam2a (ENSDARG00000058996)	atp5pf (ENSDARG00000014313)	appa (ENSDARG00000104279)	cyyr1 (ENSDARG00000103783)	ADAMTS1 (ENSDARG00000103519)	adamts5 (ENSDARG00000100307)	gart (ENSDARG00000101089)	n6amt1 (ENSDARG00000115421)	runx1 (ENSDARG00000087646)	urp2 (ENSDARG00000067781)	ENSDARG00000099108	atp1a1a.4 (ENSDARG00000001870) #22	atp1a1a.1 (ENSDARG00000002791) #22	atp1a1a.2 (ENSDARG00000007739) #22	atp1a1a.3 (ENSDARG00000039131) #22	atp1a1a.5 (ENSDARG00000040252) #22	ENSDARG00000089477	ENSDARG00000093102	ENSDARG00000095102	ENSDARG00000040250	ENSDARG00000075505 #25	slc5a3a (ENSDARG00000010376)	oxgr1a.1 (ENSDARG00000033684)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.2 (ENSDARG00000078743)	mbnl2 (ENSDARG00000018460)	rap2ab (ENSDARG00000040246)	kpnb3 (ENSDARG00000040245)	FARP1 (ENSDARG00000074381)	ENSDARG00000095179
Zebrafish	MODERN SPECIES		jam2a (ENSDARG00000058996)	atp5pf (ENSDARG00000014313)	appa (ENSDARG00000104279)	cyyr1 (ENSDARG00000103783)	ADAMTS1 (ENSDARG00000103519)	adamts5 (ENSDARG00000100307)	gart (ENSDARG00000101089)	n6amt1 (ENSDARG00000115421)	runx1 (ENSDARG00000087646)	urp2 (ENSDARG00000067781)	ENSDARG00000099108	atp1a1a.4 (ENSDARG00000001870) #22	atp1a1a.1 (ENSDARG00000002791) #22	atp1a1a.2 (ENSDARG00000007739) #22	atp1a1a.3 (ENSDARG00000039131) #22	atp1a1a.5 (ENSDARG00000040252) #22	ENSDARG00000089477	ENSDARG00000093102	ENSDARG00000095102	ENSDARG00000040250	ENSDARG00000075505 #25	slc5a3a (ENSDARG00000010376)	oxgr1a.1 (ENSDARG00000033684)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.2 (ENSDARG00000078743)	mbnl2 (ENSDARG00000018460)	rap2ab (ENSDARG00000040246)	kpnb3 (ENSDARG00000040245)	FARP1 (ENSDARG00000074381)	ENSDARG00000095179	ggact.3 (ENSDARG00000070579)
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000000292.B	ENSGT00940000157860.o	ENSGT00990000207892	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602.e	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b.c #22	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906	ENSGT00980000200000	ENSGT00940000158367.e #25	ENSGT00940000161679.b	ENSGT01030000234621.F.c	ENSGT00950000182897.B.a.b.b.b	ENSGT00940000160594.g.b.b	ENSGT00940000155502	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000158453.a
Cyprininae	ANCESTRAL SPECIES	610					ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT00990000209906.a.b	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.b
Cyprininae_a	ANCESTRAL SPECIES	158						ENSGT00730000111141.hb.b	ENSGT00390000000447.p	ENSGT00940000159255.c	ENSGT01100000263672.b	ENSGT00940000159602.e.b	ENSGT00940000159870.k.a	ENSGT01030000234765.c	ENSGT00940000154840.b.e.a.a.b.c.a #22	ENSGT00940000154840.b.e.a.a.a.d #22	ENSGT01090000260564.b	ENSGT00940000154840.b.e.a.a.b.d.b #22	ENSGT01090000260564.a	ENSGT00940000154840.b.e.a.a.b.d.a #22	ENSGT00990000209906.a.b	ENSGT00990000209906.a.a.b	ENSGT00980000200000.a.a.b.b.b	ENSGT00990000209906.b	ENSGT00980000200000.a.b	ENSGT00940000158367.e.c #25	ENSGT00940000161679.b.b	ENSGT01030000234621.F.c.j	ENSGT00950000182897.B.a.b.b.b.e	ENSGT00940000160594.g.b.b.a	ENSGT00940000155502.s	ENSGT00940000155318.b.b.a	ENSGT00390000010543.k.a
Golden-line barbel	MODERN SPECIES	527					ENSSGRG00000053301	ENSSGRG00000053300	DONSON (ENSSGRG00000053299)	runx1 (ENSSGRG00000053296)	urp2 (ENSSGRG00000053293)	ENSSGRG00000053292	ENSSGRG00000053291	ENSSGRG00000053289	atp1a1a.4 (ENSSGRG00000053207) #22	ENSSGRG00000053183	atp1a1a.1 (ENSSGRG00000047209) #22	atp1a1a.2 (ENSSGRG00000046780) #22	ENSSGRG00000046763	atp1a1a.3 (ENSSGRG00000046078) #22	ENSSGRG00000045517	ENSSGRG00000045516	ENSSGRG00000045515	ENSSGRG00000045514	ENSSGRG00000045513	ENSSGRG00000045508 #25	slc5a3a (ENSSGRG00000045506)	mbnl2 (ENSSGRG00000045500)	rap2ab (ENSSGRG00000045494)	kpnb3 (ENSSGRG00000045478)
Goldfish	MODERN SPECIES	18	HECW2 (ENSCARG00000070129)	gtf3c3 (ENSCARG00000070114)	ENSCARG00000070098	mdh1b (ENSCARG00000070090)	retreg2 (ENSCARG00000070085)	ENSCARG00000070078	cnppd1 (ENSCARG00000070074)	abcb6a (ENSCARG00000070059)	pard3ba (ENSCARG00000070049)	gpc6a (ENSCARG00000070041)	gpc5a (ENSCARG00000070030)	SLITRK5 (ENSCARG00000070023)	slitrk6 (ENSCARG00000070021)	SLITRK1 (ENSCARG00000070020)	ENSCARG00000070018	atp1a1a.2 (ENSCARG00000069999) #22	atp1a1a.3 (ENSCARG00000069992) #22	ENSCARG00000069985	ENSCARG00000069988	ENSCARG00000069981	ENSCARG00000069976	ENSCARG00000069966	atp1a1a.1 (ENSCARG00000069890) #22	atp1a1a.4 (ENSCARG00000069866) #22	ENSCARG00000069864	ENSCARG00000069863	ENSCARG00000069860	urp2 (ENSCARG00000069859)	runx1 (ENSCARG00000069840)	ENSCARG00000069830	ENSCARG00000069826
Zebrafish	MODERN SPECIES		mrpl39 (ENSDARG00000041570)	ENSDARG00000113329	jam2a (ENSDARG00000058996)	atp5pf (ENSDARG00000014313)	appa (ENSDARG00000104279)	cyyr1 (ENSDARG00000103783)	ADAMTS1 (ENSDARG00000103519)	adamts5 (ENSDARG00000100307)	gart (ENSDARG00000101089)	n6amt1 (ENSDARG00000115421)	runx1 (ENSDARG00000087646)	urp2 (ENSDARG00000067781)	ENSDARG00000099108	atp1a1a.4 (ENSDARG00000001870) #22	atp1a1a.1 (ENSDARG00000002791) #22	atp1a1a.2 (ENSDARG00000007739) #22	atp1a1a.3 (ENSDARG00000039131) #22	atp1a1a.5 (ENSDARG00000040252) #22	ENSDARG00000089477	ENSDARG00000093102	ENSDARG00000095102	ENSDARG00000040250	ENSDARG00000075505 #25	slc5a3a (ENSDARG00000010376)	oxgr1a.1 (ENSDARG00000033684)	oxgr1a.3 (ENSDARG00000040247)	oxgr1a.2 (ENSDARG00000078743)	mbnl2 (ENSDARG00000018460)	rap2ab (ENSDARG00000040246)	kpnb3 (ENSDARG00000040245)	FARP1 (ENSDARG00000074381)
Clupeiformes	ANCESTRAL SPECIES	447								ENSGT00940000157860.o	ENSGT00730000111141.hb	ENSGT00390000000447	ENSGT00940000159255	ENSGT00690000103830	ENSGT00940000159602	ENSGT00940000159870.k	ENSGT01030000234765	ENSGT00940000154840.b.e.a.a.b #22	ENSGT01100000263585
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000011200 ##24	ENSCHAG00000011284	ENSCHAG00000011315	ENSCHAG00000011454	ENSCHAG00000011475	ENSCHAG00000011528	ENSCHAG00000012777	ENSCHAG00000012825	DONSON (ENSCHAG00000012842)	ENSCHAG00000012866	urp2 (ENSCHAG00000013049)	RCAN1 (ENSCHAG00000013079)	ENSCHAG00000013090	ENSCHAG00000013115	ENSCHAG00000013181	atp1a1a.2 (ENSCHAG00000013303) #22	ENSCHAG00000019763	ENSCHAG00000019795	ENSCHAG00000019842	tiprl (ENSCHAG00000019856)	APP (ENSCHAG00000019953)	cyyr1 (ENSCHAG00000023792)	ADAMTS1 (ENSCHAG00000023795)	ADAMTS5 (ENSCHAG00000023809)	ENSCHAG00000023879	n6amt1 (ENSCHAG00000023951)	gart (ENSCHAG00000023964)	yeats4 (ENSCHAG00000024028)	frs2a (ENSCHAG00000024043)	kcnc2 (ENSCHAG00000024050)	ENSCHAG00000024067
Otomorpha	ANCESTRAL SPECIES	855																ENSGT00940000154840.b.e.a.b #22	ENSGT01030000235556
Clupeiformes	ANCESTRAL SPECIES	892																ENSGT00940000154840.b.e.a.b #22	ENSGT01030000235556
Denticle herring	MODERN SPECIES	15	ENSDCDG00000018076	ENSDCDG00000018074	NCAM2 (ENSDCDG00000014431)	ENSDCDG00000014153	ENSDCDG00000014122	DONSON (ENSDCDG00000014088)	runx1 (ENSDCDG00000014018)	ENSDCDG00000013982	ENSDCDG00000013965	ENSDCDG00000013936	ENSDCDG00000013903	ENSDCDG00000013894	ENSDCDG00000005480	ENSDCDG00000005478	ENSDCDG00000005475	atp1a1a.4 (ENSDCDG00000003539) #22	ENSDCDG00000003058	gart (ENSDCDG00000002929)	n6amt1 (ENSDCDG00000002902)	ADAMTS5 (ENSDCDG00000002888)	ADAMTS1 (ENSDCDG00000002875)	cyyr1 (ENSDCDG00000002872)	ENSDCDG00000002868	APP (ENSDCDG00000002808)	ENSDCDG00000002780	pwp2h (ENSDCDG00000002762)	TBRG4 (ENSDCDG00000002744)	ENSDCDG00000002737	glipr2l (ENSDCDG00000002735)	ENSDCDG00000002732	ENSDCDG00000002729
Euteleosteomorpha	ANCESTRAL SPECIES	129							ENSGT00990000207892	ENSGT00730000111141	ENSGT00390000000447	ENSGT00940000172034	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00940000154840.b.e.a #22	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000155814.m	ENSGT00940000153676.b	ENSGT00390000004360.a.b.a.a.b	ENSGT00940000157874.q.a	ENSGT00940000157872	ENSGT00940000157849.n.c	ENSGT00940000162479.a	ENSGT00940000155360.B.k
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	46	ENSGT00940000160555	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000154633.id.a	ENSGT00940000154633.id.b	ENSGT00940000156916	ENSGT00940000166048.a.b	ENSGT00730000111141	ENSGT00390000000447	ENSGT00940000172034	ENSGT00940000159255	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870	ENSGT01030000234765	ENSGT00940000154840.b.e.a.c #22	ENSGT00610000086518	ENSGT01090000260251	ENSGT01030000234540.E #24	ENSGT00940000158367 #25	ENSGT00940000161679.b	ENSGT00940000153981.A	ENSGT00940000159196	ENSGT00940000154443.e.c	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p	ENSGT00530000063715.b	ENSGT00940000166383.c	ENSGT00940000155814.m	ENSGT00940000153676.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1831															ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22
Salmoninae_a	ANCESTRAL SPECIES	745															ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154840.b.e.a.c.a #22
River trout	MODERN SPECIES	36	ENSSTUG00000000276	GJA3 (ENSSTUG00000031945)	pspc1 (ENSSTUG00000031930)	ENSSTUG00000031915	ENSSTUG00000031907	ENSSTUG00000031894	ENSSTUG00000031886	ENSSTUG00000031847	ENSSTUG00000031820	DONSON (ENSSTUG00000031814)	runx1 (ENSSTUG00000031539)	urp2 (ENSSTUG00000031525)	ENSSTUG00000031513	ENSSTUG00000031496	ENSSTUG00000031470	ATP1A1 (ENSSTUG00000026430) #22	ENSSTUG00000026259	ENSSTUG00000026255	ENSSTUG00000026064	ENSSTUG00000026052	ENSSTUG00000026036	ENSSTUG00000026001 #25	slc5a3a (ENSSTUG00000025996)	GPR180 (ENSSTUG00000025932)	TGDS (ENSSTUG00000025848)	ddx3xa (ENSSTUG00000025835)	ENSSTUG00000025824	usp9 (ENSSTUG00000025487)	ENSSTUG00000025461	dleu7 (ENSSTUG00000025385)	KCNRG (ENSSTUG00000025357)
Oncorhynchus	ANCESTRAL SPECIES	195													ENSGT00940000159602.m.b	ENSGT00940000159870.j.a	ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22	ENSGT00940000154840.b.e.a.c.b.d #22	ENSGT00610000086518.d.b.a	ENSGT01090000261053
Oncorhynchus_a	ANCESTRAL SPECIES	149	ENSGT00940000156984.a.a.a	ENSGT00390000003152.c.a.b	ENSGT01030000234513.B.b.d.a	ENSGT01050000244864.B.b.a.a.i	ENSGT01050000244864.B.b.a.a.j	ENSGT00940000157358.d	ENSGT01100000263507.E.a.b.a.a.a.a.a	ENSGT00940000154633.id.b.e	ENSGT00940000156916.ib.f	ENSGT00990000207892	ENSGT00940000166048.a.b.d	ENSGT00390000000447.q	ENSGT00940000159602.m.a.b	ENSGT00940000159870.j.a	ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22	ENSGT00940000154840.b.e.a.c.b.d #22	ENSGT00610000086518.d.b.a	ENSGT01090000261053.b
Coho salmon	MODERN SPECIES	7	PSPC1 (ENSOKIG00005013178)	ENSOKIG00005013168	ENSOKIG00005013162	ENSOKIG00005013152	ENSOKIG00005013146	ENSOKIG00005013134	ENSOKIG00005013122	ENSOKIG00005013094	ENSOKIG00005013078	DONSON (ENSOKIG00005013072)	runx1 (ENSOKIG00005013037)	urp2 (ENSOKIG00005013027)	ENSOKIG00005012913	RCAN1 (ENSOKIG00005012900)	ENSOKIG00005012892	ATP1A1 (ENSOKIG00005012666) #22	ENSOKIG00005012627	ENSOKIG00005012617	ENSOKIG00005012591	ENSOKIG00005012547	ENSOKIG00005012541	ENSOKIG00005012513 #25	slc5a3a (ENSOKIG00005012508)	GPR180 (ENSOKIG00005012502)	TGDS (ENSOKIG00005012487)	ENSOKIG00005011976	ENSOKIG00005011899	ENSOKIG00005011391	ENSOKIG00005011317	dleu7 (ENSOKIG00005011306)	KCNRG (ENSOKIG00005011281)
Salmoninae	ANCESTRAL SPECIES	240	ENSGT01050000244864.B.b.a.a	ENSGT00940000157358	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.b.b	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000154633.id.b	ENSGT00940000156916.ib	ENSGT00990000207892	ENSGT00940000166048.a.b	ENSGT00730000111141	ENSGT00390000000447.r	ENSGT00940000159255.p	ENSGT01100000263672	ENSGT00940000159602	ENSGT00940000159870.j	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.c.b #22	ENSGT00610000086518.d.b.b.b	ENSGT01090000260251	ENSGT00610000086518.c	ENSGT00610000086518.d.a	ENSGT00970000194096.a	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c	ENSGT00940000153981.A	ENSGT00940000159196.j.b	ENSGT00970000197763	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n	ENSGT00940000162114	ENSGT01050000244891.C.c.b.p.a.b
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00990000207892	ENSGT00940000166048.a.b	ENSGT00730000111141	ENSGT00390000000447.r.a.a	ENSGT00940000159255.o.b	ENSGT00390000000447.q	ENSGT00940000159255.o.a.b	ENSGT00940000172034	ENSGT00390000000447.r.b	ENSGT00940000159255.p	ENSGT01100000263672	ENSGT00940000159602.m.a	ENSGT00940000159870.j	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b #22	ENSGT00610000086518.d.b.b.b	ENSGT01090000260251.e	ENSGT00610000086518.d.a	ENSGT00970000194096.a	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	84	ENSGT01030000234513.B.b.d.a.d	ENSGT01050000244864.B.b.a.a.g	ENSGT00940000157358.b	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.a	ENSGT00940000154633.id.b.c	ENSGT00940000156916.ib.d	ENSGT00940000166048.a.b.f	ENSGT00390000000447.q	ENSGT00940000159255.o.a.b	ENSGT00940000172034	ENSGT00390000000447.r.a.b	ENSGT00940000159255.o.a.a	ENSGT01100000263672.f	ENSGT00940000159602.m.b	ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.b.a #22	ENSGT00610000086518.d.b.b.b.c	ENSGT01090000260251.e	ENSGT01030000234540.E #24	ENSGT00940000158367.h #25	ENSGT00940000161679.b.c.b	ENSGT00940000153981.A.f	ENSGT00940000159196.j.b	ENSGT00940000154443.e.c.b.a	ENSGT00940000155375.n.b	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c.a	ENSGT01050000244891.C.c.b.p.a.a	ENSGT01050000244891.C.c.b.p.a.b	ENSGT00530000063715.b.h
River trout	MODERN SPECIES	32	ENSSTUG00000029682	ENSSTUG00000029691	ENSSTUG00000029698	ENSSTUG00000029701	ENSSTUG00000029706	ENSSTUG00000029743	ENSSTUG00000029756	ENSSTUG00000029759	DONSON (ENSSTUG00000029783)	ENSSTUG00000029799	runx1 (ENSSTUG00000029812)	urp2 (ENSSTUG00000029905)	ENSSTUG00000029909	ENSSTUG00000029928	ENSSTUG00000029943	ATP1A1 (ENSSTUG00000029980) #22	ENSSTUG00000030552	ENSSTUG00000030666	ENSSTUG00000030677	ENSSTUG00000030697	ENSSTUG00000030707 #24	PTGFRN (ENSSTUG00000030732) #25	slc5a3a (ENSSTUG00000030745)	GPR180 (ENSSTUG00000030880)	TGDS (ENSSTUG00000030908)	ddx3xa (ENSSTUG00000031022)	usp9 (ENSSTUG00000037972)	ENSSTUG00000044268	dleu7 (ENSSTUG00000044380)	KCNRG (ENSSTUG00000044408)	kpna3 (ENSSTUG00000044425)
Atlantic salmon	MODERN SPECIES	8	pspc1 (ENSSSAG00000109737)	ENSSSAG00000097584	ENSSSAG00000082960	ENSSSAG00000038283	ENSSSAG00000018866	ADX (ENSSSAG00000079200)	ENSSSAG00000082716	ENSSSAG00000109318	ENSSSAG00000051617	runx1 (ENSSSAG00000097353)	urp2 (ENSSSAG00000108132)	ENSSSAG00000113409	ENSSSAG00000108199	ENSSSAG00000087114	ATP1A1 (ENSSSAG00000041746) #22	ATP1A1 (ENSSSAG00000119031) #22	ENSSSAG00000007175	ENSSSAG00000079714	ENSSSAG00000099420	ENSSSAG00000068973 #24	ENSSSAG00000085505	ENSSSAG00000079285 #24	PTGFRN (ENSSSAG00000073103) #25	slc5a3a (ENSSSAG00000122098)	ENSSSAG00000119794	ENSSSAG00000109921	ENSSSAG00000073268	ENSSSAG00000069234	ENSSSAG00000077498	ENSSSAG00000106472	kpna3 (ENSSSAG00000080845)
Salmo	ANCESTRAL SPECIES	72	ENSGT01050000244864.B.b.a.a.h	ENSGT00940000157358.a	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.b.b	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000154633.id.b.d	ENSGT00940000156916.ib.c	ENSGT00940000166048.a.b.e	ENSGT00730000111141	ENSGT00390000000447.r.a.a	ENSGT00940000159255.o.b	ENSGT01100000263672.e	ENSGT00940000159602.m.a	ENSGT00940000159870.j	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d.f #22	ENSGT00940000154840.b.e.a.c.b.b #22	ENSGT00610000086518.d.b.a.b	ENSGT00990000204406	ENSGT00970000194096.a	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c.a	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.a	ENSGT00940000155375.n.a	ENSGT00940000162114.f	ENSGT00940000171515.e	ENSGT00940000161898.c.b	ENSGT01050000244891.C.c.b.p.b	ENSGT00530000063715.b.g	ENSGT00940000166383.c.b
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000102898	ENSSSAG00000084476	ENSSSAG00000098624	ENSSSAG00000051657	ENSSSAG00000051650	ENSSSAG00000089239	ENSSSAG00000051632	ENSSSAG00000042713	ENSSSAG00000042724	runx1 (ENSSSAG00000086519)	urp2 (ENSSSAG00000091650)	ENSSSAG00000042678	ENSSSAG00000042673	ENSSSAG00000092493	ENSSSAG00000088702 #22	ENSSSAG00000097582 #22	ENSSSAG00000040883	ENSSSAG00000010297	ENSSSAG00000119303	ENSSSAG00000091051	ENSSSAG00000079711	ENSSSAG00000079707 #25	slc5a3a (ENSSSAG00000085714)	ENSSSAG00000079697	ENSSSAG00000079694	ENSSSAG00000079779	ENSSSAG00000079297	ENSSSAG00000080764	dleu7 (ENSSSAG00000080791)	ENSSSAG00000094505	kpna3 (ENSSSAG00000077541)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	83	ENSGT01030000234513.B.b.d.a	ENSGT01050000244864.B.b.a.a.i	ENSGT00940000157358.c	ENSGT00950000183169.B	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.a	ENSGT00940000154633.id.b.f	ENSGT00940000156916.ib.e	ENSGT00940000166048.a.b.c	ENSGT00730000111141.`b	ENSGT00940000172034	ENSGT01100000263672	ENSGT00940000159602.m.a.a	ENSGT00940000159870.j.b	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b.c #22	ENSGT00610000086518.d.b.b.b	ENSGT01090000260251.e	ENSGT00610000086518.d.a	ENSGT00970000194096.a.c	ENSGT00940000158367.h #25	ENSGT00940000161679.b.c.c	ENSGT00940000153981.A.f	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c
Oncorhynchus_a	ANCESTRAL SPECIES	92								ENSGT00730000111141.ab	ENSGT00390000000447.r.a.a	ENSGT00940000159255.p	ENSGT01100000263672	ENSGT00940000159602.m.a.a	ENSGT00940000159870.j.b	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b.c #22	ENSGT00610000086518.d.a	ENSGT00970000194096.a.c	ENSGT00940000158367.h #25	ENSGT00940000161679.b.c.c	ENSGT00990000204406	ENSGT00970000194096.a.d	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c
Coho salmon	MODERN SPECIES	25	ENSOKIG00005004227	ENSOKIG00005004232	ENSOKIG00005004242	ENSOKIG00005004288	ENSOKIG00005004351	ENSOKIG00005004387	ENSOKIG00005004430	ENSOKIG00005004445	DONSON (ENSOKIG00005008327)	RUNX1 (ENSOKIG00005008348)	ENSOKIG00005008570	ENSOKIG00005008588	ENSOKIG00005008603	ENSOKIG00005008616	ENSOKIG00005008635	ENSOKIG00005008917 #22	ENSOKIG00005014037	ENSOKIG00005014059	ENSOKIG00005014076 #25	slc5a3a (ENSOKIG00005014102)	GPR180 (ENSOKIG00005014115)	TGDS (ENSOKIG00005014267)	ENSOKIG00005014299	ENSOKIG00005014550	ENSOKIG00005014853	KCNRG (ENSOKIG00005014921)	kpna3 (ENSOKIG00005014988)	ebpl (ENSOKIG00005016008)	arl11 (ENSOKIG00005016014)	rcbtb1 (ENSOKIG00005016063)	cdadc1 (ENSOKIG00005016236)
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005003339	CTDSP1 (ENSOTSG00005003343)	spega (ENSOTSG00005003346)	ENSOTSG00005003348	ENSOTSG00005003350	ENSOTSG00005003355	tspan7b (ENSOTSG00005003362)	tspan7b (ENSOTSG00005003367)	ENSOTSG00005003370	ENSOTSG00005003376	cybb (ENSOTSG00005003381)	ENSOTSG00005003385	ENSOTSG00005003389	ENSOTSG00005003393	ENSOTSG00005003425 #22	ENSOTSG00005007425 #22	ENSOTSG00005013656	ENSOTSG00005013694	ENSOTSG00005013695	kdm6al (ENSOTSG00005013700)	tubgcp3 (ENSOTSG00005017670)	cab39l (ENSOTSG00005017677)	cdadc1 (ENSOTSG00005017727)	rcbtb1 (ENSOTSG00005017729)	kpna3 (ENSOTSG00005017759)	KCNRG (ENSOTSG00005017968)	ENSOTSG00005017975	ENSOTSG00005017976	usp9 (ENSOTSG00005018018)	ddx3xa (ENSOTSG00005022849)	ENSOTSG00005023805
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000067190	ENSOMYG00000052800	ENSOMYG00000002479	ENSOMYG00000034326	ENSOMYG00000002504	ENSOMYG00000002523	ENSOMYG00000002594	ENSOMYG00000002624	runx1 (ENSOMYG00000002684)	ENSOMYG00000002707	ENSOMYG00000002732	ENSOMYG00000002774	ENSOMYG00000002790	cu051 (ENSOMYG00000068238)	ENSOMYG00000058049	ENSOMYG00000003267 #22	ENSOMYG00000004515	ENSOMYG00000067109	ENSOMYG00000004649	ENSOMYG00000004669 #25	slc5a3a (ENSOMYG00000004682)	ENSOMYG00000004706	ENSOMYG00000004735	ENSOMYG00000005448	ENSOMYG00000005979	ENSOMYG00000006407	dleu7 (ENSOMYG00000006552)	ENSOMYG00000077533	ENSOMYG00000006589	kpna3 (ENSOMYG00000007038)	ebpl (ENSOMYG00000007703)
Oncorhynchus	ANCESTRAL SPECIES	195												ENSGT00940000159602.m.b	ENSGT00940000159870.j.a	ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22	ENSGT00940000154840.b.e.a.c.b.d #22	ENSGT00610000086518.d.b.a	ENSGT01090000261053
Oncorhynchus_a	ANCESTRAL SPECIES	149	ENSGT00390000003152.c.a.b	ENSGT01030000234513.B.b.d.a	ENSGT01050000244864.B.b.a.a.i	ENSGT01050000244864.B.b.a.a.j	ENSGT00940000157358.d	ENSGT01100000263507.E.a.b.a.a.a.a.a	ENSGT00940000154633.id.b.e	ENSGT00940000156916.ib.f	ENSGT00990000207892	ENSGT00940000166048.a.b.d	ENSGT00390000000447.q	ENSGT00940000159602.m.a.b	ENSGT00940000159870.j.a	ENSGT01030000234765.a	ENSGT00940000154840.b.e.a.c.a #22	ENSGT00940000154840.b.e.a.c.b.d #22	ENSGT00610000086518.d.b.a	ENSGT01090000261053.b
Chinook salmon	MODERN SPECIES	5	GJA3 (ENSOTSG00005005548)	pspc1 (ENSOTSG00005005549)	ENSOTSG00005005550	ENSOTSG00005005552	ENSOTSG00005005554	ENSOTSG00005005555	ENSOTSG00005005556	ENSOTSG00005005559	ENSOTSG00005005565	ENSOTSG00005005566	DONSON (ENSOTSG00005005567)	ENSOTSG00005005568	ENSOTSG00005005573	RCAN1 (ENSOTSG00005005575)	ENSOTSG00005005578 #22	ATP1A1 (ENSOTSG00005005593) #22	ENSOTSG00005005618	ENSOTSG00005005619	ENSOTSG00005005620	ENSOTSG00005005621	ENSOTSG00005005622 #25	slc5a3a (ENSOTSG00005005623)	GPR180 (ENSOTSG00005005624)	TGDS (ENSOTSG00005005628)	ddx3xa (ENSOTSG00005005640)	usp9 (ENSOTSG00005006830)	ENSOTSG00005007552	dleu7 (ENSOTSG00005007554)	ebpl (ENSOTSG00005007555)	arl11 (ENSOTSG00005007557)	unc50 (ENSOTSG00005015164)
Rainbow trout	MODERN SPECIES	9	PSPC1 (ENSOMYG00000009078)	ENSOMYG00000059082	ENSOMYG00000009084	ENSOMYG00000009129	ENSOMYG00000009136	ENSOMYG00000009170	ENSOMYG00000009208	ENSOMYG00000009226	ENSOMYG00000009265	ENSOMYG00000009295	ENSOMYG00000009319	ENSOMYG00000061614	ENSOMYG00000009386	ENSOMYG00000062878	ENSOMYG00000009394	ENSOMYG00000009596 #22	ENSOMYG00000055078	ENSOMYG00000061608	ENSOMYG00000009807	ENSOMYG00000060255	ENSOMYG00000009884	ENSOMYG00000009898	ENSOMYG00000009922 #25	slc5a3a (ENSOMYG00000009933)	ENSOMYG00000009973	ENSOMYG00000010050	ENSOMYG00000066791	ENSOMYG00000011039	ENSOMYG00000018232	ENSOMYG00000018572	dleu7 (ENSOMYG00000018629)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1504													urp2 (ENSHHUG00000042165)	RCAN1 (ENSHHUG00000042163)	ENSHHUG00000042146	ATP1A1 (ENSHHUG00000039101) #22	ENSHHUG00000039007	ENSHHUG00000038974	ENSHHUG00000038965
Huchen	MODERN SPECIES	1150												urp2 (ENSHHUG00000032923)	ENSHHUG00000032927	RCAN1 (ENSHHUG00000032932)	ENSHHUG00000032937	ENSHHUG00000032947 #22	ENSHHUG00000033287	ENSHHUG00000033289	ENSHHUG00000033303	ENSHHUG00000033308	ENSHHUG00000033348
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	21	GJA3 (ENSELUG00000003684)	pspc1 (ENSELUG00000003746)	ENSELUG00000034287	ENSELUG00000003781	FDX1 (ENSELUG00000003799)	ENSELUG00000003810	ENSELUG00000003878	DONSON (ENSELUG00000003909)	ENSELUG00000034433	runx1 (ENSELUG00000003963)	urp2 (ENSELUG00000001229)	ENSELUG00000004009	RCAN1 (ENSELUG00000004039)	ENSELUG00000004064	ENSELUG00000029789	ATP1A1 (ENSELUG00000026762) #22	ENSELUG00000004181	ENSELUG00000004230	ENSELUG00000004351 #25	ENSELUG00000004373	ENSELUG00000004437 #25	slc5a3a (ENSELUG00000004466)	GPR180 (ENSELUG00000004484)	TGDS (ENSELUG00000004517)	ddx3xa (ENSELUG00000004613)	usp9 (ENSELUG00000004816)	ENSELUG00000001490	kpna3 (ENSELUG00000004957)	ATP1A1 (ENSELUG00000032711) #22	ebpl (ENSELUG00000005023)	arl11 (ENSELUG00000000140)
Northern pike	MODERN SPECIES	21	unc50 (ENSELUG00000033269)	ENSELUG00000006099	tsga10 (ENSELUG00000006038)	lipt1 (ENSELUG00000005979)	ENSELUG00000001132	arhgef7b (ENSELUG00000005907)	ATP11A (ENSELUG00000005738)	sox1b (ENSELUG00000005792)	tubgcp3 (ENSELUG00000005567)	MCF2L (ENSELUG00000005447)	cab39l (ENSELUG00000005160)	cdadc1 (ENSELUG00000005120)	rcbtb1 (ENSELUG00000005067)	arl11 (ENSELUG00000000140)	ebpl (ENSELUG00000005023)	ATP1A1 (ENSELUG00000032711) #22	kpna3 (ENSELUG00000004957)	ENSELUG00000001490	usp9 (ENSELUG00000004816)	ddx3xa (ENSELUG00000004613)	TGDS (ENSELUG00000004517)	GPR180 (ENSELUG00000004484)	slc5a3a (ENSELUG00000004466)	ENSELUG00000004437 #25	ENSELUG00000004373	ENSELUG00000004351 #25	ENSELUG00000004230	ENSELUG00000004181	ATP1A1 (ENSELUG00000026762) #22	ENSELUG00000029789	ENSELUG00000004064
Protacanthopterygii	ANCESTRAL SPECIES	493															ENSGT01090000260459	ENSGT00940000154840.b.e.a.d #22
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	24	ENSELUG00000027707	ENSELUG00000012241	ENSELUG00000012324	ENSELUG00000030520	ENSELUG00000026479	ENSELUG00000026853	ENSELUG00000012354	ENSELUG00000033827	ENSELUG00000033774	ENSELUG00000028834	ENSELUG00000031385	ENSELUG00000025867	ENSELUG00000031566	ENSELUG00000034594	ENSELUG00000018338	ATP1A1 (ENSELUG00000018410) #22	GPM6A (ENSELUG00000018445)	wdr17 (ENSELUG00000018578)	asb5b (ENSELUG00000018654)	spcs3 (ENSELUG00000030400)	vegfc (ENSELUG00000018700)	TENM3 (ENSELUG00000018852)	ENSELUG00000016425	dctd (ENSELUG00000018934)	WWC2 (ENSELUG00000019077)	ENSELUG00000001458	xpa (ENSELUG00000019135)	ENSELUG00000019144	ENSELUG00000032305	ENSELUG00000019185	abca1a (ENSELUG00000019335)
Northern pike	MODERN SPECIES	24	hpgd (ENSELUG00000013134)	glra3 (ENSELUG00000013036)	ENSELUG00000029634	ENSELUG00000012703	ENSELUG00000012668	ENSELUG00000012682	ENSELUG00000012226	ENSELUG00000012664	ENSELUG00000012658	ENSELUG00000032869	ENSELUG00000012637	ENSELUG00000012607	ENSELUG00000026468	ENSELUG00000012600	ENSELUG00000012654	ATP1A1 (ENSELUG00000012569) #22	ENSELUG00000012485	ENSELUG00000012481	ENSELUG00000012472	ENSELUG00000012422	cabp2a (ENSELUG00000012376)	ENSELUG00000012249	ENSELUG00000033138	slc43a3a (ENSELUG00000012233)	CTNND1 (ENSELUG00000012161)	timm10 (ENSELUG00000033311)	unc93b1 (ENSELUG00000000438)	ENSELUG00000027055	ENSELUG00000012083	rtn4rl2a (ENSELUG00000012063)	ENSELUG00000012031
Northern pike	MODERN SPECIES	15	tsc22d1 (ENSELUG00000007851)	kctd4 (ENSELUG00000000285)	gtf2f2b (ENSELUG00000007842)	TPT1 (ENSELUG00000007813)	RANBP2 (ENSELUG00000007763)	ENSELUG00000007735	GCC2 (ENSELUG00000007705)	SLC5A7 (ENSELUG00000001368)	CLDN14 (ENSELUG00000007635)	ENSELUG00000007622	arl6 (ENSELUG00000000269)	EPHA6 (ENSELUG00000007494)	ENSELUG00000026514	ENSELUG00000029463	ENSELUG00000007453	ATP1A1 (ENSELUG00000007421) #22	STX19 (ENSELUG00000007366)	EPHA3 (ENSELUG00000007311)	C3orf38 (ENSELUG00000007204)	zgc:152951 (ENSELUG00000007179)	ZNF654 (ENSELUG00000007144)	ccdc93 (ENSELUG00000000250)	insig2 (ENSELUG00000007007)	EN1 (ENSELUG00000006984)	MARCO (ENSELUG00000006951)	C1QL2 (ENSELUG00000006914)	zgc:101851 (ENSELUG00000006895)	dbi (ENSELUG00000006876)	tmem37 (ENSELUG00000025136)	ENSELUG00000006846	ENSELUG00000025890
Northern pike	MODERN SPECIES	20	ENSELUG00000022714	MYH6 (ENSELUG00000026034)	ENSELUG00000001379	KCNH2 (ENSELUG00000022971)	ENSELUG00000023199	aoc1 (ENSELUG00000023206)	ENSELUG00000023256	GFOD1 (ENSELUG00000023268)	ENSELUG00000023285	RECK (ENSELUG00000001421)	tgfbr1b (ENSELUG00000023440)	VOPP1 (ENSELUG00000027885)	stk17a (ENSELUG00000023523)	HECW1 (ENSELUG00000023768)	vstm2a (ENSELUG00000000999)	ATP1A1 (ENSELUG00000023850) #22	ENSELUG00000023864	ENSELUG00000023877	ENSELUG00000024051	ENSELUG00000024099	ENSELUG00000024150	pigm (ENSELUG00000001011)	pigm (ENSELUG00000024224)	ENSELUG00000028252	ENSELUG00000024469	ileu (ENSELUG00000024448)	ENSELUG00000001022	ENSELUG00000024473	ENSELUG00000024601	cct5 (ENSELUG00000002060)	MTRR (ENSELUG00000002064)
Salmoninae	ANCESTRAL SPECIES	1830															ENSGT01090000260459	ENSGT00940000154840.b.e.a.d #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2463																ATP1A1 (ENSHHUG00000049956) #22	ENSHHUG00000050128	ENSHHUG00000050134	ENSHHUG00000050164	ENSHHUG00000050172	ENSHHUG00000050180	ENSHHUG00000050186	ENSHHUG00000050198
Huchen	MODERN SPECIES	5627																ATP1A1 (ENSHHUG00000026354) #22	ENSHHUG00000026336
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00940000156916.ib	ENSGT00990000207892	ENSGT00940000166048.a.b	ENSGT00730000111141	ENSGT00390000000447.r.a.a	ENSGT00940000159255.o.b	ENSGT00390000000447.q	ENSGT00940000159255.o.a.b	ENSGT00940000172034	ENSGT00390000000447.r.b	ENSGT00940000159255.p	ENSGT01100000263672	ENSGT00940000159602.m.a	ENSGT00940000159870.j	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b #22	ENSGT00610000086518.d.b.b.b	ENSGT01090000260251.e	ENSGT00610000086518.d.a	ENSGT00970000194096.a	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c
Salmo	DUPLICATION
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	132	ENSGT00940000157807.g.b.i.b	ENSGT01100000263483.E.b.b.a.a.a.b.a.b.a.a	ENSGT01100000263483.F.b.b	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h.a.a	ENSGT00940000165823.e.a.b	ENSGT00940000168028.c	ENSGT00390000017284.a.b.d.c.b	ENSGT00940000155980.B.f	ENSGT00940000159592.n.d	ENSGT01030000234601.n.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.a.a.b.b.a.b.b	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.a.a.b.b.a.a	ENSGT00940000154840.b.e.a.d.e.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.a.d.e.a #22	ENSGT01100000263491.a.b.b.c.a.a.g	ENSGT00940000154308.A.b.a.b.b.a	ENSGT00940000154308.A.a.b.b.b.a.a.b	ENSGT01100000263533.b.b.a.a.a.b.b	ENSGT00390000011517.a.a.c.b.m.b
River trout	DUPLICATION
River trout	MODERN SPECIES	33	ADISSP (ENSSTUG00000001984)	ENSSTUG00000001960	ENSSTUG00000001915	paip2b (ENSSTUG00000001899)	ENSSTUG00000001888	ENSSTUG00000001876	ENSSTUG00000001856	ENSSTUG00000001846	ENSSTUG00000001839	ENSSTUG00000001832	ENSSTUG00000001829	ENSSTUG00000001825	ENSSTUG00000001816	ENSSTUG00000001798	ENSSTUG00000001745	ATP1A1 (ENSSTUG00000001718) #22	ENSSTUG00000001713	ENSSTUG00000001702	ENSSTUG00000001693	ENSSTUG00000001687	ENSSTUG00000001654	ENSSTUG00000001565	PTGDR2 (ENSSTUG00000001549)	cabp2a (ENSSTUG00000001540)	ENSSTUG00000001533	ENSSTUG00000001520	ENSSTUG00000001514	slc43a3a (ENSSTUG00000001500)	slc43a3a (ENSSTUG00000001490)	ENSSTUG00000001483	CTNND1 (ENSSTUG00000001425)
River trout	MODERN SPECIES	2	paip2b (ENSSTUG00000013787)	ENSSTUG00000013800	ENSSTUG00000013808	ENSSTUG00000013816	ENSSTUG00000013821	ENSSTUG00000013823	ENSSTUG00000013828	ENSSTUG00000013829	ENSSTUG00000013833	ENSSTUG00000000745	ENSSTUG00000001123	ENSSTUG00000001131	ENSSTUG00000001150	ENSSTUG00000001159	ENSSTUG00000001413	ATP1A1 (ENSSTUG00000001428) #22	ENSSTUG00000001460	ENSSTUG00000001474	ENSSTUG00000001499	ENSSTUG00000001504	ENSSTUG00000001523	PTGDR2 (ENSSTUG00000001567)	cabp2a (ENSSTUG00000001571)	URGCP (ENSSTUG00000001582)	ENSSTUG00000001587	ENSSTUG00000001599	ENSSTUG00000001602	slc43a3a (ENSSTUG00000001612)	ENSSTUG00000001649	CTNND1 (ENSSTUG00000001667)	timm10 (ENSSTUG00000001720)
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000045515	ENSSSAG00000119121	ENSSSAG00000045566	ENSSSAG00000045568	nar5 (ENSSSAG00000106865)	nrt1 (ENSSSAG00000045605)	ENSSSAG00000111706	ENSSSAG00000092255	ENSSSAG00000002958	ENSSSAG00000113755	ENSSSAG00000003323	ENSSSAG00000097756	ENSSSAG00000100439	ENSSSAG00000003344	ENSSSAG00000003656	ENSSSAG00000088099 #22	ENSSSAG00000042154	ENSSSAG00000107273	ENSSSAG00000003827	ENSSSAG00000114983	ENSSSAG00000003832	ENSSSAG00000122108	ENSSSAG00000092157	ENSSSAG00000003836	ENSSSAG00000003714	ENSSSAG00000003777	ENSSSAG00000003844	ENSSSAG00000003886	cabp2a (ENSSSAG00000106968)	ENSSSAG00000085903	ENSSSAG00000091888
Salmo	ANCESTRAL SPECIES	132	ENSGT00950000183061.a.a.a.a.a.a.b.j	ENSGT00940000162502.a.c	ENSGT00940000157807.g.b.i.b	ENSGT01100000263483.E.b.b.a.a.a.b.a.b.a.a	ENSGT01100000263483.F.b.b	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h.a.a	ENSGT00940000165823.e.a.b	ENSGT00940000168028.c	ENSGT00390000017284.a.b.d.c.b	ENSGT00940000155980.B.f	ENSGT00940000159592.n.d	ENSGT01030000234601.n.a.a.a.b.a.a.a.a.a.a.a.a.a	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.a.a.b.b.a.b.b	ENSGT01020000230338.a.b.b.a.b.a.a.a.a.a.a.a.a.a.b.b.a.a	ENSGT00940000154840.b.e.a.d.e.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.a.d.e.a #22	ENSGT01100000263491.a.b.b.c.a.a.g	ENSGT00940000154308.A.b.a.b.b.a	ENSGT00940000154308.A.a.b.b.b.a.a.b	ENSGT01100000263533.b.b.a.a.a.b.b	ENSGT00390000011517.a.a.c.b.m.b
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000111969	ENSSSAG00000003355	ENSSSAG00000003353	ENSSSAG00000098008	ENSSSAG00000003351	ENSSSAG00000112762	ENSSSAG00000115595	ENSSSAG00000089736	ENSSSAG00000100085	ENSSSAG00000003341	ENSSSAG00000003332	ENSSSAG00000098171	ENSSSAG00000103674	ENSSSAG00000087717	ENSSSAG00000114387	ENSSSAG00000090347 #22	ENSSSAG00000042128	ENSSSAG00000106036	ENSSSAG00000084233	ENSSSAG00000104716	ENSSSAG00000002246	ENSSSAG00000002253	ENSSSAG00000003750	ENSSSAG00000098005	ENSSSAG00000101269	ENSSSAG00000003756	ENSSSAG00000086422	ENSSSAG00000115702	ENSSSAG00000100047	ENSSSAG00000073929	ENSSSAG00000115003
Salmo	ANCESTRAL SPECIES	72	ENSGT01030000234513.B.b.d.a.c	ENSGT01050000244864.B.b.a.a.h	ENSGT00940000157358.a	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.b.b	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000154633.id.b.d	ENSGT00940000156916.ib.c	ENSGT00940000166048.a.b.e	ENSGT00730000111141	ENSGT00390000000447.r.a.a	ENSGT00940000159255.o.b	ENSGT01100000263672.e	ENSGT00940000159602.m.a	ENSGT00940000159870.j	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d.f #22	ENSGT00940000154840.b.e.a.c.b.b #22	ENSGT00610000086518.d.b.a.b	ENSGT00990000204406	ENSGT00970000194096.a	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c.a	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a	ENSGT00940000154443.e.c.a	ENSGT00940000155375.n.a	ENSGT00940000162114.f	ENSGT00940000171515.e	ENSGT00940000161898.c.b	ENSGT01050000244891.C.c.b.p.b	ENSGT00530000063715.b.g
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000051659	ENSSSAG00000102898	ENSSSAG00000084476	ENSSSAG00000098624	ENSSSAG00000051657	ENSSSAG00000051650	ENSSSAG00000089239	ENSSSAG00000051632	ENSSSAG00000042713	ENSSSAG00000042724	runx1 (ENSSSAG00000086519)	urp2 (ENSSSAG00000091650)	ENSSSAG00000042678	ENSSSAG00000042673	ENSSSAG00000092493	ENSSSAG00000088702 #22	ENSSSAG00000097582 #22	ENSSSAG00000040883	ENSSSAG00000010297	ENSSSAG00000119303	ENSSSAG00000091051	ENSSSAG00000079711	ENSSSAG00000079707 #25	slc5a3a (ENSSSAG00000085714)	ENSSSAG00000079697	ENSSSAG00000079694	ENSSSAG00000079779	ENSSSAG00000079297	ENSSSAG00000080764	dleu7 (ENSSSAG00000080791)	ENSSSAG00000094505
Atlantic salmon	MODERN SPECIES	8	GJA3 (ENSSSAG00000105322)	pspc1 (ENSSSAG00000109737)	ENSSSAG00000097584	ENSSSAG00000082960	ENSSSAG00000038283	ENSSSAG00000018866	ADX (ENSSSAG00000079200)	ENSSSAG00000082716	ENSSSAG00000109318	ENSSSAG00000051617	runx1 (ENSSSAG00000097353)	urp2 (ENSSSAG00000108132)	ENSSSAG00000113409	ENSSSAG00000108199	ENSSSAG00000087114	ATP1A1 (ENSSSAG00000041746) #22	ATP1A1 (ENSSSAG00000119031) #22	ENSSSAG00000007175	ENSSSAG00000079714	ENSSSAG00000099420	ENSSSAG00000068973 #24	ENSSSAG00000085505	ENSSSAG00000079285 #24	PTGFRN (ENSSSAG00000073103) #25	slc5a3a (ENSSSAG00000122098)	ENSSSAG00000119794	ENSSSAG00000109921	ENSSSAG00000073268	ENSSSAG00000069234	ENSSSAG00000077498	ENSSSAG00000106472
Oncorhynchus	ANCESTRAL SPECIES	83	ENSGT00390000003152.c.a.a	ENSGT01030000234513.B.b.d.a	ENSGT01050000244864.B.b.a.a.i	ENSGT00940000157358.c	ENSGT00950000183169.B	ENSGT01100000263507.E.a.b.a.a.a.a.b.a.a.b.a.a.b.a.a	ENSGT00940000154633.id.b.f	ENSGT00940000156916.ib.e	ENSGT00940000166048.a.b.c	ENSGT00730000111141.`b	ENSGT00940000172034	ENSGT01100000263672	ENSGT00940000159602.m.a.a	ENSGT00940000159870.j.b	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b.c #22	ENSGT00610000086518.d.b.b.b	ENSGT01090000260251.e	ENSGT00610000086518.d.a	ENSGT00970000194096.a.c	ENSGT00940000158367.h #25	ENSGT00940000161679.b.c.c	ENSGT00940000153981.A.f	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f	ENSGT00940000161898.c
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000076495	ENSOMYG00000065015	ENSOMYG00000061811	ENSOMYG00000053837	ENSOMYG00000053186	ENSOMYG00000049550	ENSOMYG00000064212	ENSOMYG00000064067	ENSOMYG00000031846	ENSOMYG00000008879	ENSOMYG00000074592	ENSOMYG00000007291	ENSOMYG00000074420	ENSOMYG00000008235	ENSOMYG00000008216	ENSOMYG00000008139 #22	ENSOMYG00000008088	ENSOMYG00000006772	ENSOMYG00000008051	ENSOMYG00000006752	ENSOMYG00000006728	ENSOMYG00000006628	ENSOMYG00000007714	ENSOMYG00000007583	cabp2a (ENSOMYG00000048275)	ENSOMYG00000008331	ENSOMYG00000055244	ENSOMYG00000060458	ENSOMYG00000006263	ENSOMYG00000065744	slc43a3a (ENSOMYG00000006052)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000061303	ENSOMYG00000008278	ENSOMYG00000008158	ENSOMYG00000008085	ENSOMYG00000009619	ENSOMYG00000076067	ENSOMYG00000051944	ENSOMYG00000060427	ENSOMYG00000071094	ENSOMYG00000006793	ENSOMYG00000008064	ENSOMYG00000007934	ENSOMYG00000006679	ENSOMYG00000007979	ENSOMYG00000007971	ENSOMYG00000009416 #22	ENSOMYG00000063395	ENSOMYG00000069574	ENSOMYG00000006463	ENSOMYG00000075670	cabp2a (ENSOMYG00000005837)	ENSOMYG00000056042	ENSOMYG00000027845	ENSOMYG00000051591	ENSOMYG00000053786	ENSOMYG00000063676	slc43a3a (ENSOMYG00000005730)	ENSOMYG00000048753	ENSOMYG00000069882	timm10 (ENSOMYG00000059199)	unc93b1 (ENSOMYG00000068967)
Oncorhynchus_a	ANCESTRAL SPECIES	92									ENSGT00730000111141.ab	ENSGT00390000000447.r.a.a	ENSGT00940000159255.p	ENSGT01100000263672	ENSGT00940000159602.m.a.a	ENSGT00940000159870.j.b	ENSGT01030000234765.b	ENSGT00940000154840.b.e.a.d #22	ENSGT00940000154840.b.e.a.c.b.c #22	ENSGT00610000086518.d.a	ENSGT00970000194096.a.c	ENSGT00940000158367.h #25	ENSGT00940000161679.b.c.c	ENSGT00990000204406	ENSGT00970000194096.a.d	ENSGT00940000158367.g #25	ENSGT00940000161679.b.c.d	ENSGT00940000153981.A.e	ENSGT00940000159196.j.a.a	ENSGT00940000154443.e.c.b.b	ENSGT00940000155375.n.d	ENSGT00940000162114.e	ENSGT00940000171515.f
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	36	ENSOKIG00005021266	ENSOKIG00005021285	ENSOKIG00005021289	ENSOKIG00005021301	paip2b (ENSOKIG00005021329)	ENSOKIG00005021366	ENSOKIG00005021372	ENSOKIG00005021387	ENSOKIG00005021428	ENSOKIG00005021444	ADISSP (ENSOKIG00005021486)	ENSOKIG00005021492	ENSOKIG00005021500	ENSOKIG00005021513	ENSOKIG00005021519	ATP1A1 (ENSOKIG00005021527) #22	ENSOKIG00005021644	ENSOKIG00005021655	ENSOKIG00005021686	ENSOKIG00005021734	ENSOKIG00005021742	ENSOKIG00005021755	ENSOKIG00005021763	ENSOKIG00005021808	PTGDR2 (ENSOKIG00005039224)	cabp2a (ENSOKIG00005039241)	ENSOKIG00005039270	ENSOKIG00005039279	ENSOKIG00005039287	slc43a3a (ENSOKIG00005039306)	ENSOKIG00005039370
Coho salmon	MODERN SPECIES	544														ENSOKIG00005027928	ENSOKIG00005027919	ATP1A1 (ENSOKIG00005027811) #22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005002545	ENSOTSG00005003339	CTDSP1 (ENSOTSG00005003343)	spega (ENSOTSG00005003346)	ENSOTSG00005003348	ENSOTSG00005003350	ENSOTSG00005003355	tspan7b (ENSOTSG00005003362)	tspan7b (ENSOTSG00005003367)	ENSOTSG00005003370	ENSOTSG00005003376	cybb (ENSOTSG00005003381)	ENSOTSG00005003385	ENSOTSG00005003389	ENSOTSG00005003393	ENSOTSG00005003425 #22	ENSOTSG00005007425 #22	ENSOTSG00005013656	ENSOTSG00005013694	ENSOTSG00005013695	kdm6al (ENSOTSG00005013700)	tubgcp3 (ENSOTSG00005017670)	cab39l (ENSOTSG00005017677)	cdadc1 (ENSOTSG00005017727)	rcbtb1 (ENSOTSG00005017729)	kpna3 (ENSOTSG00005017759)	KCNRG (ENSOTSG00005017968)	ENSOTSG00005017975	ENSOTSG00005017976	usp9 (ENSOTSG00005018018)	ddx3xa (ENSOTSG00005022849)
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005005547	GJA3 (ENSOTSG00005005548)	pspc1 (ENSOTSG00005005549)	ENSOTSG00005005550	ENSOTSG00005005552	ENSOTSG00005005554	ENSOTSG00005005555	ENSOTSG00005005556	ENSOTSG00005005559	ENSOTSG00005005565	ENSOTSG00005005566	DONSON (ENSOTSG00005005567)	ENSOTSG00005005568	ENSOTSG00005005573	RCAN1 (ENSOTSG00005005575)	ENSOTSG00005005578 #22	ATP1A1 (ENSOTSG00005005593) #22	ENSOTSG00005005618	ENSOTSG00005005619	ENSOTSG00005005620	ENSOTSG00005005621	ENSOTSG00005005622 #25	slc5a3a (ENSOTSG00005005623)	GPR180 (ENSOTSG00005005624)	TGDS (ENSOTSG00005005628)	ddx3xa (ENSOTSG00005005640)	usp9 (ENSOTSG00005006830)	ENSOTSG00005007552	dleu7 (ENSOTSG00005007554)	ebpl (ENSOTSG00005007555)	arl11 (ENSOTSG00005007557)
Clupeocephala	ANCESTRAL SPECIES	740															ENSGT01050000244827.B #20	ENSGT00940000154840.b.e.b #22
Otomorpha	ANCESTRAL SPECIES	591												ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT00940000154840.b.e.b #22
Otophysi	ANCESTRAL SPECIES	45	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00720000109997	ENSGT00940000157860.p	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260459	ENSGT00940000154840.b.e.a.a.a #22	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055	ENSGT00530000062962.a.a	ENSGT00940000158054.d	ENSGT00940000158470
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a	ENSGT00940000158054.d	ENSGT00940000158470
Channel catfish	MODERN SPECIES	25	p2ry8 (ENSIPUG00000023449)	upf3a (ENSIPUG00000023450)	cdc16 (ENSIPUG00000023472)	dcun1d2a (ENSIPUG00000023492)	TFDP1 (ENSIPUG00000023520)	mettl21cb (ENSIPUG00000023542)	jam2b (ENSIPUG00000023543)	GABPA (ENSIPUG00000023554)	appb (ENSIPUG00000023561)	NCAM2 (ENSIPUG00000023589)	ENSIPUG00000023597	rcan1a (ENSIPUG00000023600)	ENSIPUG00000023605	DNAJC28 (ENSIPUG00000023606)	mab21l3 (ENSIPUG00000023609) #20	atp1a1 (ENSIPUG00000023616) #22	ENSIPUG00000023637	LRP1B (ENSIPUG00000023641)	ENSIPUG00000023652	ralb (ENSIPUG00000023656)	ENSIPUG00000023659	inhbb (ENSIPUG00000023661)	gli2 (ENSIPUG00000023662)	ENSIPUG00000023664	ENSIPUG00000023665	tfcp2l1 (ENSIPUG00000023667)	clasp1a (ENSIPUG00000023671)	nifk (ENSIPUG00000023690)	klf7b (ENSIPUG00000023698)	creb1 (ENSIPUG00000023702)	ccnyl1 (ENSIPUG00000023709)
Characiphysae_b	ANCESTRAL SPECIES	60	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a	ENSGT00940000158054.d	ENSGT00940000158470
Characoidei	ANCESTRAL SPECIES	1	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00940000157860.p	ENSGT01060000253632	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT01090000260564	ENSGT00940000154840.b.e.a.a.b.b.a.b #22	ENSGT01090000260459	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00390000013973.A.a.c.a	ENSGT00940000159158	ENSGT00940000154817.b.a	ENSGT00390000011515	ENSGT00940000165301.a	ENSGT00950000182837.b.b.d	ENSGT00940000157055.i	ENSGT00530000062962.a.a	ENSGT00940000158054.d	ENSGT00940000158470
Red-bellied piranha	MODERN SPECIES	37	upf3a (ENSPNAG00000019532)	cdc16 (ENSPNAG00000019517)	dcun1d2a (ENSPNAG00000019464)	tfdp1a (ENSPNAG00000019436)	mettl21cb (ENSPNAG00000003592)	jam2b (ENSPNAG00000019315)	gabpa (ENSPNAG00000019192)	appb (ENSPNAG00000019164)	ncam2 (ENSPNAG00000019070)	ENSPNAG00000018953	sona (ENSPNAG00000018884)	rcan1a (ENSPNAG00000018860)	ENSPNAG00000003554	dnajc28 (ENSPNAG00000018836)	mab21l3 (ENSPNAG00000018830) #20	atp1a1b (ENSPNAG00000018818) #22	LRP1B (ENSPNAG00000018700)	ralba (ENSPNAG00000018145)	ENSPNAG00000018117	inhbb (ENSPNAG00000018093)	gli2a (ENSPNAG00000018076)	ENSPNAG00000018066	tfcp2l1 (ENSPNAG00000018056)	clasp1a (ENSPNAG00000018018)	nifk (ENSPNAG00000017902)	ENSPNAG00000017870
Mexicana tetra	MODERN SPECIES	10	cdc16 (ENSAMXG00000002621)	dcun1d2a (ENSAMXG00000002635)	tfdp1a (ENSAMXG00000040488)	mettl21cb (ENSAMXG00000002665)	ENSAMXG00000035472	jam2b (ENSAMXG00000038845)	gabpa (ENSAMXG00000002684)	appb (ENSAMXG00000002725)	ncam2 (ENSAMXG00000002761)	ENSAMXG00000031025	rcan1a (ENSAMXG00000034491)	dnajc28 (ENSAMXG00000026074)	ENSAMXG00000029245	mab21l3 (ENSAMXG00000002838) #20	ENSAMXG00000033714	atp1a1b (ENSAMXG00000033172) #22	ENSAMXG00000034219	LRP1B (ENSAMXG00000002960)	ralba (ENSAMXG00000038817)	ENSAMXG00000039380	ENSAMXG00000030861	inhbb (ENSAMXG00000003122)	ENSAMXG00000032025	gli2a (ENSAMXG00000043175)	ENSAMXG00000029579	clasp1a (ENSAMXG00000003132)	nifk (ENSAMXG00000029665)	ENSAMXG00000003151	cacnb4a (ENSAMXG00000031115)	stam2 (ENSAMXG00000003240)	hacd2 (ENSAMXG00000043141)
Electric eel	MODERN SPECIES	22	asmtl (ENSEEEG00000022244)	P2RY8 (ENSEEEG00000022242)	upf3a (ENSEEEG00000022241)	cdc16 (ENSEEEG00000022226)	dcun1d2a (ENSEEEG00000022224)	tfdp1a (ENSEEEG00000022218)	mettl21cb (ENSEEEG00000022213)	jam2b (ENSEEEG00000022211)	gabpa (ENSEEEG00000022203)	appb (ENSEEEG00000021758)	ncam2 (ENSEEEG00000021705)	ENSEEEG00000021702	rcan1a (ENSEEEG00000021700)	ENSEEEG00000021699	dnajc28 (ENSEEEG00000021698)	atp1a1b (ENSEEEG00000019145) #22	LRP1B (ENSEEEG00000019053)	ralba (ENSEEEG00000019049)	ENSEEEG00000019047	inhbb (ENSEEEG00000019040)	gli2a (ENSEEEG00000019021)	ENSEEEG00000019017	pth2ra (ENSEEEG00000019015)	MRAS (ENSEEEG00000019014)	tmem177 (ENSEEEG00000019013)	ptpn4a (ENSEEEG00000019009)	epb41l5 (ENSEEEG00000019007)	ramp1 (ENSEEEG00000019006)	zgc:162780 (ENSEEEG00000019002)	zgc:162396 (ENSEEEG00000019000)	klf7b (ENSEEEG00000018997)
Cyprinoidei	ANCESTRAL SPECIES	80	ENSGT00940000157453.s	ENSGT00940000154652.p	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00720000109997	ENSGT00940000157860.p	ENSGT00940000163253.b.d.a.b	ENSGT00730000111141.ib	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a	ENSGT00940000155984.j	ENSGT00940000165735	ENSGT00940000159862.a	ENSGT00940000159213.q.a	ENSGT00940000156507	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712.b	ENSGT00940000156797	ENSGT00940000158470	ENSGT00940000158054.d	ENSGT00530000062962.a.a	ENSGT00940000157055	ENSGT00950000182837.b.b.d
Cyprininae	ANCESTRAL SPECIES	208	ENSGT00950000182950.B.j	ENSGT00940000157453.s.h	ENSGT00940000157453.s.g.b	ENSGT00940000154652.p.i	ENSGT00940000165208.b.a	ENSGT00940000155799.p	ENSGT00530000063252.a.b.a.b.a	ENSGT00720000109997	ENSGT00940000157860.p.b	ENSGT00940000163253.b.d.a.b	ENSGT00730000111141.ib	ENSGT00940000159870.l.b	ENSGT00940000154497.A.a	ENSGT00940000154065.b.j	ENSGT01050000244827.B.a #20	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a.e.b	ENSGT00940000155984.j.b	ENSGT00940000165735	ENSGT00940000159862.a.d	ENSGT00940000159213.q.a.c	ENSGT00940000156507.m	ENSGT00940000159893.c	ENSGT01030000234625.D.l	ENSGT00940000156712.b.f	ENSGT00940000156797.h	ENSGT00940000158470.e	ENSGT00940000158054.d.k	ENSGT00530000062962.a.a.d	ENSGT00940000157055.h	ENSGT00950000182837.b.b.d.b
Cyprininae_a	ANCESTRAL SPECIES	31	ENSGT00940000162413.a	ENSGT01050000244840.B.t	ENSGT00390000017146.b.o.b	ENSGT00950000182950.B.i	ENSGT00940000157453.s.g.b	ENSGT00940000154652.p.i	ENSGT00940000165208.b.a	ENSGT00940000155799.p	ENSGT00530000063252.a.b.a.b.a	ENSGT00940000157860.p.b	ENSGT00940000163253.b.d.a.b	ENSGT00940000159870.l.b	ENSGT00940000154497.A.a	ENSGT00940000154065.b.j	ENSGT01050000244827.B.a #20	ENSGT00940000154840.b.e.b #22	ENSGT00940000157521.a.a.e.b	ENSGT00940000155984.j.b	ENSGT00940000165735	ENSGT00940000159862.a.d	ENSGT00940000159213.q.a.c	ENSGT00940000156507.m	ENSGT00940000159893.c	ENSGT01030000234625.D.l	ENSGT00940000156712.b.f	ENSGT00940000156797.h	ENSGT00940000158470.e	ENSGT00940000158054.d.k	ENSGT00530000062962.a.a.d	ENSGT00940000157055.h	ENSGT00950000182837.b.b.d.b
Common carp reference	MODERN SPECIES	41	ENSCCRG00000069682	P2RY8 (ENSCCRG00000061575)	upf3a (ENSCCRG00000002317)	cdc16 (ENSCCRG00000036317)	dcun1d2a (ENSCCRG00000038217)	tfdp1a (ENSCCRG00000038626)	jam2b (ENSCCRG00000043417)	gabpa (ENSCCRG00000044033)	appb (ENSCCRG00000044049)	ncam2 (ENSCCRG00000015757)	zp2l1 (ENSCCRG00000033098)	sona (ENSCCRG00000072037)	rcan1a (ENSCCRG00000034212)	ENSCCRG00000054033	mab21l3 (ENSCCRG00000006604) #20	atp1a1b (ENSCCRG00000079304) #22	ENSCCRG00000017784	ENSCCRG00000066265	ralba (ENSCCRG00000056318)	ENSCCRG00000057965	inhbb (ENSCCRG00000076082)	gli2a (ENSCCRG00000016620)	slc15a2 (ENSCCRG00000016646)	hspbap1 (ENSCCRG00000016640)	slc49a4 (ENSCCRG00000016624)	SEMA5B (ENSCCRG00000016665)	pdia5 (ENSCCRG00000031383)	sec22a (ENSCCRG00000031424)	adcy5 (ENSCCRG00000026276)	hacd2 (ENSCCRG00000031550)	stam2 (ENSCCRG00000031574)
Golden-line barbel	MODERN SPECIES	1313											zp2l1 (ENSSGRG00000023621)	rcan1a (ENSSGRG00000023619)	ENSSGRG00000023618	dnajc28 (ENSSGRG00000023617)	mab21l3 (ENSSGRG00000023615) #20	atp1a1b (ENSSGRG00000015598) #22
Goldfish	MODERN SPECIES	27	ENSCARG00000045696	slc25a6 (ENSCARG00000045656)	P2RY8 (ENSCARG00000045632)	upf3a (ENSCARG00000045499)	cdc16 (ENSCARG00000045192)	dcun1d2a (ENSCARG00000045050)	tfdp1a (ENSCARG00000045000)	jam2b (ENSCARG00000044948)	gabpa (ENSCARG00000044910)	appb (ENSCARG00000034363)	ENSCARG00000033925	ncam2 (ENSCARG00000032962)	zp2l1 (ENSCARG00000032889)	rcan1a (ENSCARG00000032862)	ENSCARG00000032856	atp1a1b (ENSCARG00000031589) #22	ENSCARG00000031028	ralba (ENSCARG00000030954)	inhbb (ENSCARG00000030932)	gli2a (ENSCARG00000030903)	slc15a2 (ENSCARG00000029432)	hspbap1 (ENSCARG00000029340)	slc49a4 (ENSCARG00000029317)	SEMA5B (ENSCARG00000028729)	pdia5 (ENSCARG00000026398)	sec22a (ENSCARG00000026338)	ENSCARG00000026333	adcy5 (ENSCARG00000025868)	hacd2 (ENSCARG00000025797)	stam2 (ENSCARG00000024836)	cacnb4a (ENSCARG00000020293)
Zebrafish	MODERN SPECIES	24	cdc16 (ENSDARG00000055470)	dcun1d2a (ENSDARG00000040838)	tfdp1a (ENSDARG00000019293)	mettl21cb (ENSDARG00000055437)	ENSDARG00000076122	jam2b (ENSDARG00000079071)	gabpa (ENSDARG00000069289)	appb (ENSDARG00000055543)	ENSDARG00000094012	ncam2 (ENSDARG00000017466)	zp2l1 (ENSDARG00000055415)	sona (ENSDARG00000055389)	rcan1a (ENSDARG00000003109)	dnajc28 (ENSDARG00000018181)	mab21l3 (ENSDARG00000076013) #20	atp1a1b (ENSDARG00000019856) #22	LRP1B (ENSDARG00000061517)	ralba (ENSDARG00000040778)	ENSDARG00000074079	inhbb (ENSDARG00000040777)	gli2a (ENSDARG00000025641)	slc15a2 (ENSDARG00000032010)	hspbap1 (ENSDARG00000033771)	slc49a4 (ENSDARG00000009783)	SEMA5B (ENSDARG00000061471)	pdia5 (ENSDARG00000069242)	sec22a (ENSDARG00000078328)	adcy5 (ENSDARG00000091342)	hacd2 (ENSDARG00000014806)	stam2 (ENSDARG00000005318)	cacnb4a (ENSDARG00000009738)
Clupeiformes	ANCESTRAL SPECIES	406					ENSGT00390000015060	ENSGT00940000161679.a	ENSGT00940000154497.B	ENSGT00390000019377.b.f #16	ENSGT00390000012496.a.d	ENSGT00940000164480.a.a	ENSGT00940000159415	ENSGT00940000159870.l	ENSGT00940000154497.A	ENSGT00940000154065.b	ENSGT01050000244827.B #20	ENSGT00940000154840.b.e.b #22
Denticle herring	MODERN SPECIES	19	lmo7a (ENSDCDG00000019367)	kctd12.1 (ENSDCDG00000019580)	acod1 (ENSDCDG00000019585)	zgc:162944 (ENSDCDG00000019599)	atp5po (ENSDCDG00000019601)	SLC5A3 (ENSDCDG00000019602)	KCNE2 (ENSDCDG00000019604)	casq2 (ENSDCDG00000019610) #16	vangl1 (ENSDCDG00000019702)	nhlh2 (ENSDCDG00000019707)	CNGA4 (ENSDCDG00000019712)	rcan1a (ENSDCDG00000019717)	ENSDCDG00000019718	dnajc28 (ENSDCDG00000019719)	mab21l3 (ENSDCDG00000019722) #20	atp1a1b (ENSDCDG00000019818) #22	ENSDCDG00000024807	ENSDCDG00000024809	ENSDCDG00000024836	ENSDCDG00000025608	ENSDCDG00000025614	ENSDCDG00000025620	ENSDCDG00000025624	ENSDCDG00000025626	ENSDCDG00000025630	ENSDCDG00000025633	inhbb (ENSDCDG00000025634)	gli2a (ENSDCDG00000025641)	SAMD9 (ENSDCDG00000025685)	tfcp2l1 (ENSDCDG00000025694)	clasp1a (ENSDCDG00000025909)
Clupeocephala	ANCESTRAL SPECIES	926															ENSGT01090000260459	ENSGT00940000154840.b.f #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f #22
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000024158	ENSCHAG00000024153	ENSCHAG00000024152	ENSCHAG00000024149	atp5po (ENSCHAG00000024141)	KCNE2 (ENSCHAG00000024059)	casq2 (ENSCHAG00000024013) #16	vangl1 (ENSCHAG00000023988)	nhlh2 (ENSCHAG00000023984)	AQP8 (ENSCHAG00000023832)	CNGA4 (ENSCHAG00000023820)	rcan1a (ENSCHAG00000023817)	ENSCHAG00000023812	dnajc28 (ENSCHAG00000023810)	mab21l3 (ENSCHAG00000023802) #20	ENSCHAG00000020871 #22	ENSCHAG00000020765	ENSCHAG00000020732 ##24	ENSCHAG00000020744	ENSCHAG00000020721 ##24	ENSCHAG00000020700	clasp1a (ENSCHAG00000018184)	tfcp2l1 (ENSCHAG00000017978)	ENSCHAG00000017950	ENSCHAG00000017769	ENSCHAG00000017746	ENSCHAG00000017733	inhbb (ENSCHAG00000017712)	ENSCHAG00000017704	ENSCHAG00000017628	ENSCHAG00000002001
Euteleosteomorpha	ANCESTRAL SPECIES	693															ENSGT01090000260459	ENSGT00940000154840.b.f #22
Acanthomorphata	ANCESTRAL SPECIES	661															ENSGT01090000260459	ENSGT00940000154840.b.f #22
Euacanthomorphacea	ANCESTRAL SPECIES	36															ENSGT01090000260459	ENSGT00940000154840.b.f #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A	ENSGT00390000003758	ENSGT00940000153534.A
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005003372	ENSMMDG00005003369	ical1 (ENSMMDG00005003365)	wdr12 (ENSMMDG00005003362)	nop58 (ENSMMDG00005003349)	ENSMMDG00005003343	tmem47 (ENSMMDG00005003341)	ENSMMDG00005003335	dmd (ENSMMDG00005000976)	gtf3c3 (ENSMMDG00005000464)	HECW2 (ENSMMDG00005000161)	ENSMMDG00005015466	ENSMMDG00005015423	ENSMMDG00005015409	ENSMMDG00005015403	atp1a1a.2 (ENSMMDG00005007789) #22	ENSMMDG00005007670	ccdc28a (ENSMMDG00005007667)	ENSMMDG00005007661	FILIP1L (ENSMMDG00005007656)	ENSMMDG00005007651	ENSMMDG00005007649	ENSMMDG00005007647	jagn1b (ENSMMDG00005007646)	ENSMMDG00005007497	ENSMMDG00005006907	ENSMMDG00005006897	ENSMMDG00005006895	ENSMMDG00005006894	ENSMMDG00005006891	chn1 (ENSMMDG00005006516)
Percomorphaceae	ANCESTRAL SPECIES	233															ENSGT01090000260600	ENSGT00940000154840.b.f #22	ENSGT01090000260459
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	487			ENSHCOG00000000837	ENSHCOG00000002953	ENSHCOG00000003013	igfbp5a (ENSHCOG00000003030)	igfbp2a (ENSHCOG00000003034)	ENSHCOG00000003049	ENSHCOG00000003056	ENSHCOG00000003065	ENSHCOG00000003082	CTDSP1 (ENSHCOG00000003099)	obsl1a (ENSHCOG00000003139)	ENSHCOG00000003146	ENSHCOG00000003177 #22	ATP1A1 (ENSHCOG00000003216) #22	ENSHCOG00000003239	ccdc28a (ENSHCOG00000003252)	ENSHCOG00000003278	FILIP1L (ENSHCOG00000000101)	ENSHCOG00000003317	jagn1b (ENSHCOG00000003324)	ENSHCOG00000003331	mrps9 (ENSHCOG00000003338)	DUSP7 (ENSHCOG00000003353)	ENSHCOG00000003365	slc6a1a (ENSHCOG00000003383)	VGLL4 (ENSHCOG00000003393)	syn2a (ENSHCOG00000003422)	raf1a (ENSHCOG00000003447)	cnbpa (ENSHCOG00000003457)
Tiger tail seahorse	MODERN SPECIES	487				ENSHCOG00000000837	ENSHCOG00000002953	ENSHCOG00000003013	igfbp5a (ENSHCOG00000003030)	igfbp2a (ENSHCOG00000003034)	ENSHCOG00000003049	ENSHCOG00000003056	ENSHCOG00000003065	ENSHCOG00000003082	CTDSP1 (ENSHCOG00000003099)	obsl1a (ENSHCOG00000003139)	ENSHCOG00000003146	ENSHCOG00000003177 #22	ATP1A1 (ENSHCOG00000003216) #22	ENSHCOG00000003239	ccdc28a (ENSHCOG00000003252)	ENSHCOG00000003278	FILIP1L (ENSHCOG00000000101)	ENSHCOG00000003317	jagn1b (ENSHCOG00000003324)	ENSHCOG00000003331	mrps9 (ENSHCOG00000003338)	DUSP7 (ENSHCOG00000003353)	ENSHCOG00000003365	slc6a1a (ENSHCOG00000003383)	VGLL4 (ENSHCOG00000003393)	syn2a (ENSHCOG00000003422)	raf1a (ENSHCOG00000003447)
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	DUPLICATION
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000163418.A.a.b	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a
Pomacentridae	ANCESTRAL SPECIES	111										ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000154317.b	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496	ENSGT00940000156597.a.b.a	ENSGT00940000157652
Pomacentridae_A	ANCESTRAL SPECIES	115									ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.g	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496	ENSGT00940000156597.a.b.a	ENSGT00940000157652	ENSGT01030000234570.d.a.p
Amphiprion	ANCESTRAL SPECIES	135									ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.g	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496	ENSGT00940000156597.a.b.a	ENSGT00940000157652	ENSGT01030000234570.d.a.p
Clown anemonefish	MODERN SPECIES	598							ENSAOCG00000020505	NCAM2 (ENSAOCG00000020562)	inha (ENSAOCG00000020577)	spega (ENSAOCG00000020690)	CTDSP1 (ENSAOCG00000001528)	obsl1a (ENSAOCG00000020800)	ENSAOCG00000020818	ENSAOCG00000020893 #22	ENSAOCG00000020904	ATP1A1 (ENSAOCG00000020990) #22	ENSAOCG00000021046	ccdc28a (ENSAOCG00000021060)	ENSAOCG00000021086	FILIP1L (ENSAOCG00000021107)
Orange clownfish	MODERN SPECIES	16	zgc:65895 (ENSAPEG00000014874)	ENSAPEG00000014854	ENSAPEG00000014844	ENSAPEG00000014824	FARP1 (ENSAPEG00000014702)	ggact.3 (ENSAPEG00000014676)	arl13b (ENSAPEG00000014654)	NCAM2 (ENSAPEG00000014541)	ENSAPEG00000014463	inha (ENSAPEG00000014437)	spega (ENSAPEG00000014333)	CTDSP1 (ENSAPEG00000014300)	obsl1a (ENSAPEG00000014228)	ENSAPEG00000014141 #22	ENSAPEG00000014118	ATP1A1 (ENSAPEG00000014030) #22	ENSAPEG00000013974	ccdc28a (ENSAPEG00000013881)	ENSAPEG00000013811	ENSAPEG00000013789	FILIP1L (ENSAPEG00000013770)	actr3 (ENSAPEG00000013673)	LYPD1 (ENSAPEG00000013659)	NCKAP5 (ENSAPEG00000013630)	gpd1c (ENSAPEG00000013535)	OSBPL11 (ENSAPEG00000013486)	pou3f3b (ENSAPEG00000013456)	mrps9 (ENSAPEG00000013413)	UNC80 (ENSAPEG00000013145)	ENSAPEG00000013075	acadl (ENSAPEG00000013016)
Spiny chromis	MODERN SPECIES	2471															ENSAPOG00000019543	ATP1A1 (ENSAPOG00000019624) #22
Bicolor damselfish	MODERN SPECIES	584							ENSSPAG00000007531	obsl1a (ENSSPAG00000007485)	ENSSPAG00000007455	ccdc28a (ENSSPAG00000007443)	ENSSPAG00000007429	ENSSPAG00000007417	FILIP1L (ENSSPAG00000007387)	ENSSPAG00000007374	ATP1A1 (ENSSPAG00000007326) #22	ENSSPAG00000007272 #22	ENSSPAG00000007254	ENSSPAG00000007241	CTDSP1 (ENSSPAG00000007192)	inha (ENSSPAG00000007175)
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000176837.b.b	ENSGT00940000177880	ENSGT00940000176837.b.a.b	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375
P. nyererei	MODERN SPECIES	540					CHRNA2 (ENSPNYG00000022083)	spega (ENSPNYG00000022026)	CTDSP1 (ENSPNYG00000021982)	obsl1a (ENSPNYG00000021916)	ENSPNYG00000021892	ENSPNYG00000021881 #22	ENSPNYG00000021866 #22	ENSPNYG00000021858	ENSPNYG00000021840 #22	ENSPNYG00000021826	ENSPNYG00000021807 #22	ATP1A1 (ENSPNYG00000021779) #22	ENSPNYG00000021759	ENSPNYG00000021736	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021682	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021654	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021622
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000163647
Zebra mbuna	MODERN SPECIES	1105	ALS2 (ENSMZEG00005017474)	CHRNA2 (ENSMZEG00005017497)	ENSMZEG00005017505	ENSMZEG00005017509	ENSMZEG00005017512	CTDSP1 (ENSMZEG00005017519)	obsl1a (ENSMZEG00005017536)	ENSMZEG00005017594 #22	ENSMZEG00005017608	ENSMZEG00005017609 #22	ENSMZEG00005017620	ENSMZEG00005017626 #22	ENSMZEG00005017639 #22	ENSMZEG00005017648	ENSMZEG00005017652	ATP1A1 (ENSMZEG00005017655) #22	ENSMZEG00005017685	ENSMZEG00005017697	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017719	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017736	zgc:172122 (ENSMZEG00005017744)	u2af1 (ENSMZEG00005017751)	cbsa (ENSMZEG00005017757)	ENSMZEG00005017767	ENSMZEG00005017774	ENSMZEG00005017780	ENSMZEG00005017783	ENSMZEG00005017786	n6amt1 (ENSMZEG00005017792)
Eastern happy	MODERN SPECIES	14	MPP4 (ENSACLG00000015624)	ENSACLG00000015698	ALS2 (ENSACLG00000015714)	CHRNA2 (ENSACLG00000015825)	spega (ENSACLG00000015860)	CTDSP1 (ENSACLG00000015973)	obsl1a (ENSACLG00000016009)	ENSACLG00000016079	ENSACLG00000016283 #22	ENSACLG00000023442	ENSACLG00000023458 #22	ENSACLG00000023491	ENSACLG00000023504 #22	ENSACLG00000023544 #22	ENSACLG00000023606	ATP1A1 (ENSACLG00000023619) #22	ENSACLG00000023651	ENSACLG00000023697	ENSACLG00000023720	ccdc28a (ENSACLG00000023727)	ENSACLG00000023736	FILIP1L (ENSACLG00000023767)	ENSACLG00000023781	ENSACLG00000023818	jagn1b (ENSACLG00000023842)	ENSACLG00000023823	ENSACLG00000023863	ENSACLG00000023922	MTRF1 (ENSACLG00000023945)	ENSACLG00000023974	ENSACLG00000024001
Burton s mouthbrooder	MODERN SPECIES	492		CHRNA2 (ENSHBUG00000021704)	ENSHBUG00000021591	ENSHBUG00000021574	ENSHBUG00000021567	ENSHBUG00000021559	CTDSP1 (ENSHBUG00000021545)	obsl1a (ENSHBUG00000021477)	ENSHBUG00000021421 #22	ENSHBUG00000021359	ENSHBUG00000000658 #22	ENSHBUG00000021275 #22	ENSHBUG00000021193	ENSHBUG00000021178 #22	ENSHBUG00000021146	ATP1A1 (ENSHBUG00000021121) #22	ENSHBUG00000021064	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021030	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000020967	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020958	ENSHBUG00000020932	ENSHBUG00000020880	ENSHBUG00000000644	ENSHBUG00000020861	ENSHBUG00000020842
Lyretail cichlid	MODERN SPECIES	315	MPP4 (ENSNBRG00000014143)	ALS2 (ENSNBRG00000014044)	CHRNA2 (ENSNBRG00000013966)	ENSNBRG00000013908	ENSNBRG00000013896	CTDSP1 (ENSNBRG00000013840)	obsl1a (ENSNBRG00000013788)	ENSNBRG00000013779	ATP1A1 (ENSNBRG00000008877) #22	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000005416) #22	ENSNBRG00000005153	ENSNBRG00000005085 #22	ENSNBRG00000005065	ENSNBRG00000004998 #22	ATP1A1 (ENSNBRG00000004921) #22	ENSNBRG00000004895	ENSNBRG00000004876	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004805	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004754	COL8A1 (ENSNBRG00000004746)	jagn1b (ENSNBRG00000004740)	ENSNBRG00000004673	ENSNBRG00000004655	MTRF1 (ENSNBRG00000004634)	ENSNBRG00000004614	ENSNBRG00000004607	chn1 (ENSNBRG00000004568)	ENSNBRG00000004547
Nile tilapia	MODERN SPECIES	14	GALNT8 (ENSONIG00000010313)	abi2b (ENSONIG00000012331)	cyp20a1 (ENSONIG00000012336)	tmem237b (ENSONIG00000012346)	MPP4 (ENSONIG00000032396)	ALS2 (ENSONIG00000027435)	CHRNA2 (ENSONIG00000012349)	spega (ENSONIG00000012351)	CTDSP1 (ENSONIG00000012356)	obsl1a (ENSONIG00000027470)	ENSONIG00000012358 #22	ENSONIG00000035563	ENSONIG00000032416 #22	ENSONIG00000042153	ENSONIG00000036775	ATP1A1 (ENSONIG00000012456) #22	ENSONIG00000012467	ccdc28a (ENSONIG00000012468)	ENSONIG00000012469	FILIP1L (ENSONIG00000012470)	ENSONIG00000012471	ENSONIG00000012472	jagn1b (ENSONIG00000040771)	ENSONIG00000043206	ENSONIG00000032249	ENSONIG00000042299	ENSONIG00000033858	ENSONIG00000040072	ENSONIG00000038222	ENSONIG00000040495	ENSONIG00000036956
Midas cichlid	MODERN SPECIES	971	ENSACIG00000003047	igfbp5a (ENSACIG00000002677)	igfbp2a (ENSACIG00000002653)	ENSACIG00000002626	ENSACIG00000002543	inha (ENSACIG00000002528)	spega (ENSACIG00000002119)	CTDSP1 (ENSACIG00000002070)	obsl1a (ENSACIG00000002022)	ENSACIG00000002015	ENSACIG00000001965 #22	ENSACIG00000001901 #22	ENSACIG00000001848 #22	ENSACIG00000001836	ATP1A1 (ENSACIG00000001788) #22	ENSACIG00000001741 #22	ENSACIG00000001713	ccdc28a (ENSACIG00000001700)	ENSACIG00000001652	FILIP1L (ENSACIG00000001638)	ENSACIG00000001621	COL8A1 (ENSACIG00000001609)	jagn1b (ENSACIG00000001599)	ENSACIG00000001551	ENSACIG00000001515	MTRF1 (ENSACIG00000001495)	ENSACIG00000001488	ENSACIG00000001473	ENSACIG00000001459
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00940000154342.C	ENSGT00530000063484.b.b.d.b
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000005130	ENSGT00940000159144.A.e.a
Aplocheiloidei	ANCESTRAL SPECIES	80	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a
Turquoise killifish	MODERN SPECIES	1613	METTL21A (ENSNFUG00015003152)	Nfu_g_1_003653 (ENSNFUG00015003142)	ENSNFUG00015003137	ENSNFUG00015003129	ENSNFUG00015002522	igfbp5a (ENSNFUG00015002393)	IGFBP2A (ENSNFUG00015002390)	STK11IP (ENSNFUG00015002382)	OLA.20466 (ENSNFUG00015002378)	inha (ENSNFUG00015002374)	ENSNFUG00015002370	CTDSP1 (ENSNFUG00015002312)	obsl1a (ENSNFUG00015002229)	ENSNFUG00015002189	ENSNFUG00015002186	ATP1A1B (ENSNFUG00015001901) #22	ENSNFUG00015001799	PROX1 (ENSNFUG00015001790)	ENSNFUG00015001782	ENSNFUG00015001776	CCDC28A (ENSNFUG00015001769)	ENSNFUG00015001740	FILIP1L (ENSNFUG00015001737)	ENSNFUG00015001734	PKP4 (ENSNFUG00015000923)	FHL2 (ENSNFUG00015000700)	ENSNFUG00015000695	ENSNFUG00015000691	ENSNFUG00015000681	COL18A1 (ENSNFUG00015000608)	abi2b (ENSNFUG00015000506)
Mangrove rivulus	MODERN SPECIES	96	CREB1 (ENSKMAG00000003336)	mettl21a (ENSKMAG00000003323)	ENSKMAG00000003283	ENSKMAG00000003227	ENSKMAG00000003134	igfbp5a (ENSKMAG00000002961)	igfbp2a (ENSKMAG00000002915)	stk11ip (ENSKMAG00000002880)	ENSKMAG00000002850	inha (ENSKMAG00000002829)	ENSKMAG00000002805	CTDSP1 (ENSKMAG00000002718)	ENSKMAG00000002688	obsl1a (ENSKMAG00000002614)	ENSKMAG00000002529 #22	ATP1A1 (ENSKMAG00000002471) #22	ENSKMAG00000002423	ccdc28a (ENSKMAG00000002405)	ENSKMAG00000002348	FILIP1L (ENSKMAG00000002312)	ENSKMAG00000002299	COL8A1 (ENSKMAG00000002289)	ENSKMAG00000002104
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000005130	ENSGT00940000159144.A.e.a
NAME_4	ANCESTRAL SPECIES	90	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000163418.A.a.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154756.B.v	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22
Mummichog	MODERN SPECIES	260	ENSFHEG00000017510	ENSFHEG00000000803	ENSFHEG00000017339	igfbp5a (ENSFHEG00000017332)	igfbp2a (ENSFHEG00000017325)	stk11ip (ENSFHEG00000017294)	ENSFHEG00000017272	inha (ENSFHEG00000017229)	ENSFHEG00000017206	ENSFHEG00000017194	spega (ENSFHEG00000017168)	CTDSP1 (ENSFHEG00000017160)	obsl1a (ENSFHEG00000017134)	ATP1A1 (ENSFHEG00000017054) #22	ENSFHEG00000016987	ENSFHEG00000016972 #22
Sheepshead minnow	MODERN SPECIES	207	ENSCVAG00000012408	ENSCVAG00000012448	igfbp5a (ENSCVAG00000012453)	igfbp2a (ENSCVAG00000012461)	ENSCVAG00000012470	ENSCVAG00000012479	inha (ENSCVAG00000012495)	ENSCVAG00000012509	ENSCVAG00000012539	ENSCVAG00000012559	CTDSP1 (ENSCVAG00000012587)	obsl1a (ENSCVAG00000012666)	ENSCVAG00000012679	ENSCVAG00000012732 #22	ENSCVAG00000012745	ATP1A1 (ENSCVAG00000012799) #22	ENSCVAG00000012807
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000005130	ENSGT00940000159144.A.e.a
Poecilia	ANCESTRAL SPECIES	45	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a
NAME_6	ANCESTRAL SPECIES	232	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a
Amazon molly	MODERN SPECIES	460	klf7a (ENSPFOG00000013890)	CREB1 (ENSPFOG00000023773)	CREB1 (ENSPFOG00000013920)	mettl21a (ENSPFOG00000014013)	ENSPFOG00000014028	ENSPFOG00000014114	igfbp5a (ENSPFOG00000014348)	igfbp2a (ENSPFOG00000014380)	stk11ip (ENSPFOG00000014410)	ENSPFOG00000014526	inha (ENSPFOG00000014537)	spega (ENSPFOG00000014558)	CTDSP1 (ENSPFOG00000014754)	obsl1a (ENSPFOG00000014777)	ATP1A1 (ENSPFOG00000014864) #22	ENSPFOG00000015178 #22	ENSPFOG00000015503
Sailfin molly	MODERN SPECIES	1041								ENSPLAG00000007413	inha (ENSPLAG00000007395)	ENSPLAG00000007380	ENSPLAG00000007361	CTDSP1 (ENSPLAG00000007347)	obsl1a (ENSPLAG00000007337)	ATP1A1 (ENSPLAG00000007239) #22	ENSPLAG00000007193	ENSPLAG00000007135 #22
Guppy	MODERN SPECIES	450	ENSPREG00000016892	ENSPREG00000016919	ENSPREG00000016961	igfbp5a (ENSPREG00000017043)	igfbp2a (ENSPREG00000017056)	ENSPREG00000017069	ENSPREG00000017083	ENSPREG00000017092	inha (ENSPREG00000017100)	spega (ENSPREG00000017121)	ENSPREG00000017206	CTDSP1 (ENSPREG00000017262)	obsl1a (ENSPREG00000017290)	ENSPREG00000017415 #22	ENSPREG00000017463	ATP1A1 (ENSPREG00000017481) #22	ENSPREG00000017519	ENSPREG00000017586	ENSPREG00000017596	ENSPREG00000017610	ENSPREG00000017622	atg3 (ENSPREG00000017638)	SLC19A2 (ENSPREG00000017667)	ENSPREG00000017679	ENSPREG00000017697	atp1b1b (ENSPREG00000017732)	CNGA3 (ENSPREG00000017756)	UBE3A (ENSPREG00000017799)	ddx4 (ENSPREG00000017840)	ENSPREG00000017872	ENSPREG00000017886
Platyfish	MODERN SPECIES	16	mettl21a (ENSXMAG00000026231)	ENSXMAG00000027034	ENSXMAG00000029269	ENSXMAG00000021456	ENSXMAG00000007804	igfbp5a (ENSXMAG00000007799)	igfbp2a (ENSXMAG00000024734)	stk11ip (ENSXMAG00000029049)	ENSXMAG00000000509	inha (ENSXMAG00000000511)	spega (ENSXMAG00000000514)	CTDSP1 (ENSXMAG00000000525)	obsl1a (ENSXMAG00000000533)	ENSXMAG00000013209 #22	ENSXMAG00000028735	ATP1A1 (ENSXMAG00000008520) #22	ENSXMAG00000009972	ccdc28a (ENSXMAG00000022750)	ENSXMAG00000009965	FILIP1L (ENSXMAG00000009955)	COL8A1 (ENSXMAG00000022370)	jagn1b (ENSXMAG00000009941)	ENSXMAG00000009933	ENSXMAG00000009878	ENSXMAG00000029739	ENSXMAG00000009853	ENSXMAG00000009852	ENSXMAG00000026199	ENSXMAG00000020169	ENSXMAG00000009847	ENSXMAG00000025376
Oryzias	ANCESTRAL SPECIES	55	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a
Oryzias_a	ANCESTRAL SPECIES	76	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.e #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00940000155773.a	ENSGT01030000235131
Japanese Medaka HdrR	MODERN SPECIES	11	KLF7 (ENSORLG00000030422)	ENSORLG00000002359	mettl21a (ENSORLG00000002331)	ENSORLG00000002319	ENSORLG00000022647	ENSORLG00000002301	igfbp5a (ENSORLG00000002243)	igfbp2a (ENSORLG00000022125)	stk11ip (ENSORLG00000002225)	ENSORLG00000002202	inha (ENSORLG00000002184)	spega (ENSORLG00000002177)	CTDSP1 (ENSORLG00000002151)	obsl1a (ENSORLG00000002135)	ENSORLG00000002047 #22	ATP1A1 (ENSORLG00000018557) #22	ENSORLG00000027612	prox1a (ENSORLG00000001996)	ccdc28a (ENSORLG00000026855)	ENSORLG00000024492	FILIP1L (ENSORLG00000001976)	ENSORLG00000001973	COL8A1 (ENSORLG00000001968)	ACTR3 (ENSORLG00000001964)	ENSORLG00000028132	NCKAP5 (ENSORLG00000001953)	gpd1c (ENSORLG00000001939)	OSBPL11 (ENSORLG00000001914)	ENSORLG00000023000	pou3f3b (ENSORLG00000001901)	mrps9 (ENSORLG00000001896)
Chinese medaka	MODERN SPECIES	229	ENSOSIG00000000616	si:dkey-276j7.1 (ENSOSIG00000000617)	ENSOSIG00000000618	mrps9 (ENSOSIG00000000621)	pou3f3b (ENSOSIG00000001036)	OSBPL11 (ENSOSIG00000001053)	gpd1c (ENSOSIG00000003177)	NCKAP5 (ENSOSIG00000003206)	LYPD1 (ENSOSIG00000003228)	ACTR3 (ENSOSIG00000003238)	COL8A1 (ENSOSIG00000003281)	ENSOSIG00000003286	FILIP1L (ENSOSIG00000003291)	ccdc28a (ENSOSIG00000003296)	ENSOSIG00000003306	ATP1A1 (ENSOSIG00000003574) #22
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000003758	ENSGT00940000153534.A
Indian medaka	MODERN SPECIES	20	ENSOMEG00000013696	ENSOMEG00000013727	ENSOMEG00000013932	igfbp5a (ENSOMEG00000013983)	igfbp2a (ENSOMEG00000014012)	stk11ip (ENSOMEG00000014048)	ENSOMEG00000014072	inha (ENSOMEG00000014087)	ENSOMEG00000014099	ENSOMEG00000014128	ENSOMEG00000014144	ENSOMEG00000014156	CTDSP1 (ENSOMEG00000014176)	obsl1a (ENSOMEG00000014266)	ATP1A1 (ENSOMEG00000014366) #22	ENSOMEG00000014415 #22	ENSOMEG00000014454	ccdc28a (ENSOMEG00000014477)	COL8A1 (ENSOMEG00000014510)	ENSOMEG00000014548	atp6v1c1a (ENSOMEG00000014607)	azin1a (ENSOMEG00000014684)	ENSOMEG00000000368	ncalda (ENSOMEG00000014721)	ubr5 (ENSOMEG00000014794)	ENSOMEG00000014819	ENSOMEG00000014858	LAPTM4B (ENSOMEG00000014886)	MATN2 (ENSOMEG00000015004)	pou3f3b (ENSOMEG00000015038)	mrps9 (ENSOMEG00000015064)
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000006555	erbb4a (ENSOJAG00000006976)	RAMP1 (ENSOJAG00000010777)	si:ch211-93g23.2 (ENSOJAG00000010785)	klf7a (ENSOJAG00000010793)	CREB1 (ENSOJAG00000010805)	mettl21a (ENSOJAG00000010881)	ENSOJAG00000010889	igfbp5a (ENSOJAG00000011783)	igfbp2a (ENSOJAG00000011789)	stk11ip (ENSOJAG00000011798)	ENSOJAG00000011828	inha (ENSOJAG00000011912)	CTDSP1 (ENSOJAG00000012413)	obsl1a (ENSOJAG00000012480)	atp1a1a.2 (ENSOJAG00000012725) #22	ENSOJAG00000013034	ENSOJAG00000013051	ccdc28a (ENSOJAG00000013081)	COL8A1 (ENSOJAG00000013092)	ENSOJAG00000013101	FILIP1L (ENSOJAG00000013129)	ENSOJAG00000013138	jagn1b (ENSOJAG00000013151)	ENSOJAG00000013175	ENSOJAG00000013637	MTRF1 (ENSOJAG00000013650)	ENSOJAG00000013662	ENSOJAG00000013694	nufip1 (ENSOJAG00000013715)	nop58 (ENSOJAG00000013730)
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000155400.A	ENSGT00940000177880	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000159144.B	ENSGT01030000234635.a.b.a.b.a
Seriola	ANCESTRAL SPECIES	44	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000168817.v	ENSGT00730000111912.A.b.h.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.e.a	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a
Greater amberjack	MODERN SPECIES	8	mettl21a (ENSSDUG00000022324)	ENSSDUG00000022327	ENSSDUG00000022335	ENSSDUG00000022345	igfbp5a (ENSSDUG00000022364)	igfbp2a (ENSSDUG00000022368)	stk11ip (ENSSDUG00000022373)	ENSSDUG00000022382	inha (ENSSDUG00000022385)	ENSSDUG00000022391	ENSSDUG00000022396	spega (ENSSDUG00000022403)	CTDSP1 (ENSSDUG00000022464)	obsl1a (ENSSDUG00000022471)	ATP1A1 (ENSSDUG00000022483) #22	ENSSDUG00000022513 #22	ENSSDUG00000022521	ENSSDUG00000022523	ccdc28a (ENSSDUG00000022533)	ENSSDUG00000022543	FILIP1L (ENSSDUG00000022571)	ENSSDUG00000022575	COL8A1 (ENSSDUG00000022581)	jagn1b (ENSSDUG00000022584)	ENSSDUG00000022588	ENSSDUG00000022603	ENSSDUG00000022608	ENSSDUG00000022614	zgc:65895 (ENSSDUG00000022619)
Yellowtail amberjack	MODERN SPECIES	3005	ENSSLDG00000006080	ENSSLDG00000006146	ENSSLDG00000006240	igfbp5a (ENSSLDG00000006254)	igfbp2a (ENSSLDG00000006271)	stk11ip (ENSSLDG00000006300)	ENSSLDG00000006412	inha (ENSSLDG00000006429)	ENSSLDG00000006455	ENSSLDG00000006464	ENSSLDG00000006483	spega (ENSSLDG00000006523)	CTDSP1 (ENSSLDG00000006608)	obsl1a (ENSSLDG00000006670)	ENSSLDG00000006733 #22	ATP1A1 (ENSSLDG00000006796) #22	ENSSLDG00000006864	ccdc28a (ENSSLDG00000006899)	ENSSLDG00000006915	FILIP1L (ENSSLDG00000006948)	ENSSLDG00000006980	COL8A1 (ENSSLDG00000006992)
Barramundi perch	MODERN SPECIES	179	mettl21a (ENSLCAG00010021149)	ENSLCAG00010021145	ENSLCAG00010021140	ENSLCAG00010021034	igfbp5a (ENSLCAG00010020973)	igfbp2a (ENSLCAG00010020967)	stk11ip (ENSLCAG00010020939)	ENSLCAG00010020929	inha (ENSLCAG00010020928)	spega (ENSLCAG00010020806)	CTDSP1 (ENSLCAG00010020750)	obsl1a (ENSLCAG00010020745)	ENSLCAG00010020727	ENSLCAG00010020514 #22	ENSLCAG00010020463	ATP1A1 (ENSLCAG00010015946) #22	ENSLCAG00010014899	ccdc28a (ENSLCAG00010014892)	ENSLCAG00010014867	FILIP1L (ENSLCAG00010014858)	COL8A1 (ENSLCAG00010014854)
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Climbing perch	MODERN SPECIES	11	METTL21A (ENSATEG00000016424)	ENSATEG00000016462	ENSATEG00000016553	igfbp5a (ENSATEG00000016633)	igfbp2a (ENSATEG00000016648)	stk11ip (ENSATEG00000016659)	ENSATEG00000016685	inha (ENSATEG00000016691)	spega (ENSATEG00000016711)	ENSATEG00000028227	ENSATEG00000016858	ENSATEG00000029999	ENSATEG00000025533 #22	ENSATEG00000017105	ENSATEG00000017044	ENSATEG00000017119 #22	ENSATEG00000017165	ENSATEG00000028636	ENSATEG00000017222	ENSATEG00000017244	ENSATEG00000029263	ENSATEG00000017259	jagn1b (ENSATEG00000025315)	ENSATEG00000017276	ENSATEG00000017314	ENSATEG00000026081	ENSATEG00000028401	ENSATEG00000027904	ENSATEG00000017447	ENSATEG00000017469	ENSATEG00000017488
Siamese fighting fish	MODERN SPECIES	10	CREB1 (ENSBSLG00000022332)	mettl21a (ENSBSLG00000022369)	ENSBSLG00000022388	ENSBSLG00000022466	ENSBSLG00000022605	igfbp5a (ENSBSLG00000022607)	igfbp2a (ENSBSLG00000022803)	stk11ip (ENSBSLG00000022845)	ENSBSLG00000022921	inha (ENSBSLG00000022940)	CTDSP1 (ENSBSLG00000000123)	obsl1a (ENSBSLG00000000192)	ENSBSLG00000000359 #22	ENSBSLG00000000711	ENSBSLG00000000717	ATP1A1 (ENSBSLG00000000739) #22	ENSBSLG00000000800	ccdc28a (ENSBSLG00000000804)	ENSBSLG00000000806	ENSBSLG00000000818	FILIP1L (ENSBSLG00000000822)	ENSBSLG00000000829	jagn1b (ENSBSLG00000000831)	ENSBSLG00000000839	ENSBSLG00000000871	ENSBSLG00000000907	ENSBSLG00000000912	ENSBSLG00000000916	ENSBSLG00000001189	ENSBSLG00000001209	chn1 (ENSBSLG00000001277)
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000021173	ENSMAMG00000025634	KLF7 (ENSMAMG00000026580)	ENSMAMG00000021185	METTL21A (ENSMAMG00000026332)	ENSMAMG00000027480	ENSMAMG00000021206	igfbp5a (ENSMAMG00000021214)	igfbp2a (ENSMAMG00000021218)	stk11ip (ENSMAMG00000021220)	ENSMAMG00000021223	inha (ENSMAMG00000021227)	spega (ENSMAMG00000021230)	ENSMAMG00000025232	obsl1a (ENSMAMG00000021250)	ENSMAMG00000021276 #22	ENSMAMG00000021256 #22	ENSMAMG00000021265 #22	ENSMAMG00000021281	ENSMAMG00000021296	ENSMAMG00000021298	ENSMAMG00000021299	ENSMAMG00000021300	ENSMAMG00000021301	ENSMAMG00000021303	ENSMAMG00000021307	ENSMAMG00000021442	ENSMAMG00000023088	ENSMAMG00000026084	ENSMAMG00000021452	ENSMAMG00000021481
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Ballan wrasse	MODERN SPECIES	177	mettl21a (ENSLBEG00000014047)	ENSLBEG00000014075	ENSLBEG00000014131	ENSLBEG00000014213	ENSLBEG00000014316	igfbp5a (ENSLBEG00000014331)	igfbp2a (ENSLBEG00000014348)	ENSLBEG00000014361	ENSLBEG00000014385	inha (ENSLBEG00000014403)	spega (ENSLBEG00000014437)	CTDSP1 (ENSLBEG00000014530)	obsl1a (ENSLBEG00000014588)	ENSLBEG00000014685 #22	ENSLBEG00000014730	ENSLBEG00000014756 #22	ENSLBEG00000014841	ccdc28a (ENSLBEG00000014880)	ENSLBEG00000014897	FILIP1L (ENSLBEG00000014937)	ENSLBEG00000014962	COL8A1 (ENSLBEG00000014993)	jagn1b (ENSLBEG00000015019)	ENSLBEG00000015056	ENSLBEG00000015070	ENSLBEG00000015085	jam2a (ENSLBEG00000015125)	mrpl39 (ENSLBEG00000015152)	rap2ab (ENSLBEG00000015171)	mbnl2 (ENSLBEG00000015200)	ENSLBEG00000015241
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.f	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543
European seabass	MODERN SPECIES	15	si:ch211-93g23.2 (ENSDLAG00005026289)	KLF7 (ENSDLAG00005034369)	ENSDLAG00005031054	METTL21A (ENSDLAG00005032128)	ENSDLAG00005034442	ENSDLAG00005026299	igfbp5a (ENSDLAG00005031221)	igfbp2a (ENSDLAG00005026308)	stk11ip (ENSDLAG00005026309)	ENSDLAG00005001248	inha (ENSDLAG00005001265)	spega (ENSDLAG00005001309)	ENSDLAG00005031224	obsl1a (ENSDLAG00005001666)	ENSDLAG00005008575	ENSDLAG00005001937 #22	ENSDLAG00005008580	ENSDLAG00005008623	ENSDLAG00005008587	ENSDLAG00005008692	ENSDLAG00005008697	ENSDLAG00005034157	jagn1b (ENSDLAG00005008710)	ENSDLAG00005008723	ENSDLAG00005008856	ENSDLAG00005008866	ENSDLAG00005033899	ENSDLAG00005034796	ENSDLAG00005008916	ENSDLAG00005009274	ENSDLAG00005031513
Large yellow croaker	MODERN SPECIES	486	RAMP1 (ENSLCRG00005004304)	si:ch211-93g23.2 (ENSLCRG00005004302)	klf7a (ENSLCRG00005004301)	CREB1 (ENSLCRG00005004271)	mettl21a (ENSLCRG00005004270)	ENSLCRG00005004184	ENSLCRG00005003684	igfbp5a (ENSLCRG00005003666)	igfbp2a (ENSLCRG00005003663)	stk11ip (ENSLCRG00005003656)	ENSLCRG00005003652	inha (ENSLCRG00005003650)	spega (ENSLCRG00005003627)	CTDSP1 (ENSLCRG00005003597)	obsl1a (ENSLCRG00005003532)	atp1a1a.2 (ENSLCRG00005002126) #22	ENSLCRG00005002096	ccdc28a (ENSLCRG00005002088)	ENSLCRG00005002075	FILIP1L (ENSLCRG00005002068)	ENSLCRG00005002063	COL8A1 (ENSLCRG00005002058)	jagn1b (ENSLCRG00005002054)	si:ch211-114n24.6 (ENSLCRG00005002033)	bin1b (ENSLCRG00005001440)	ihhb (ENSLCRG00005001418)	ENSLCRG00005001416	nhej1 (ENSLCRG00005001412)	rpgrb (ENSLCRG00005001404)	dynlt3 (ENSLCRG00005001390)	cybb (ENSLCRG00005001094)
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Channel bull blenny	MODERN SPECIES	11	RAMP1 (ENSCGOG00000016261)	klf7a (ENSCGOG00000016259)	CREB1 (ENSCGOG00000016247)	mettl21a (ENSCGOG00000016258)	ENSCGOG00000016222	ENSCGOG00000016221	ENSCGOG00000015311	igfbp5a (ENSCGOG00000015302)	igfbp2a (ENSCGOG00000015300)	stk11ip (ENSCGOG00000015278)	ENSCGOG00000015272	inha (ENSCGOG00000015271)	CTDSP1 (ENSCGOG00000015229)	obsl1a (ENSCGOG00000015161)	ENSCGOG00000015155	atp1a1a.2 (ENSCGOG00000001511) #22	ENSCGOG00000001097	ENSCGOG00000001092	ENSCGOG00000001090	ccdc28a (ENSCGOG00000001087)	ENSCGOG00000001082	FILIP1L (ENSCGOG00000001081)	COL8A1 (ENSCGOG00000001079)	jagn1b (ENSCGOG00000001078)	ENSCGOG00000001076	ENSCGOG00000000696	ENSCGOG00000000483	ENSCGOG00000000438	ENSCGOG00000000435	ENSCGOG00000000434	nudt15 (ENSCGOG00000000432)
Pike perch	MODERN SPECIES	9	CREB1 (ENSSLUG00000005076)	klf7a (ENSSLUG00000026119)	si:ch211-93g23.2 (ENSSLUG00000026118)	si:ch211-93g23.2 (ENSSLUG00000026117)	RAMP1 (ENSSLUG00000026116)	erbb4a (ENSSLUG00000026115)	lancl1 (ENSSLUG00000026114)	mylz3 (ENSSLUG00000026113)	acadl (ENSSLUG00000026112)	ENSSLUG00000026111	ENSSLUG00000026109	ENSSLUG00000026108	ENSSLUG00000026107	ENSSLUG00000026087 #22	ENSSLUG00000026063	ATP1A1 (ENSSLUG00000026029) #22	ENSSLUG00000026021	ENSSLUG00000026020	ccdc28a (ENSSLUG00000026019)	ENSSLUG00000026018	FILIP1L (ENSSLUG00000026015)	ENSSLUG00000026014	COL8A1 (ENSSLUG00000026013)	jagn1b (ENSSLUG00000026012)	ENSSLUG00000026010	ENSSLUG00000025996	ENSSLUG00000025991	ENSSLUG00000025990	ENSSLUG00000025987	zgc:65895 (ENSSLUG00000025986)	ENSSLUG00000025981
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153981.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000154344.b	ENSGT00940000161628
Lumpfish	MODERN SPECIES	11	RAB9A (ENSCLMG00005015144)	TCEANC (ENSCLMG00005015145)	ENSCLMG00005015148	ENSCLMG00005015149	HDAC4 (ENSCLMG00005015160)	aamp (ENSCLMG00005016669)	ENSCLMG00005016674	ENSCLMG00005016675	ENSCLMG00005016676	arpc2 (ENSCLMG00005002833)	ENSCLMG00005002970	SLC19A1 (ENSCLMG00005002976)	ENSCLMG00005002983	CYP4F8 (ENSCLMG00005002994)	OBSL1 (ENSCLMG00005003015)	atp1a1a.2 (ENSCLMG00005003148) #22	ENSCLMG00005005457	ccdc28a (ENSCLMG00005005458)	ENSCLMG00005005465	FILIP1L (ENSCLMG00005005481)	ENSCLMG00005005492	COL8A1 (ENSCLMG00005005494)	jagn1b (ENSCLMG00005005495)	ENSCLMG00005005497	ENSCLMG00005005499	ENSCLMG00005005501	NCAM2 (ENSCLMG00005005502)	ENSCLMG00005005503	arl13b (ENSCLMG00005005504)	ggact.3 (ENSCLMG00005005507)	FARP1 (ENSCLMG00005005518)
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000163418.A.a.b	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000025634	KLF7 (ENSMAMG00000026580)	ENSMAMG00000021185	METTL21A (ENSMAMG00000026332)	ENSMAMG00000027480	ENSMAMG00000021206	igfbp5a (ENSMAMG00000021214)	igfbp2a (ENSMAMG00000021218)	stk11ip (ENSMAMG00000021220)	ENSMAMG00000021223	inha (ENSMAMG00000021227)	spega (ENSMAMG00000021230)	ENSMAMG00000025232	obsl1a (ENSMAMG00000021250)	ENSMAMG00000021276 #22	ENSMAMG00000021256 #22	ENSMAMG00000021265 #22	ENSMAMG00000021281	ENSMAMG00000021296	ENSMAMG00000021298	ENSMAMG00000021299	ENSMAMG00000021300	ENSMAMG00000021301	ENSMAMG00000021303	ENSMAMG00000021307	ENSMAMG00000021442	ENSMAMG00000023088	ENSMAMG00000026084	ENSMAMG00000021452	ENSMAMG00000021481	ENSMAMG00000021458
Zig-zag eel	MODERN SPECIES	11	KLF7 (ENSMAMG00000026580)	ENSMAMG00000021185	METTL21A (ENSMAMG00000026332)	ENSMAMG00000027480	ENSMAMG00000021206	igfbp5a (ENSMAMG00000021214)	igfbp2a (ENSMAMG00000021218)	stk11ip (ENSMAMG00000021220)	ENSMAMG00000021223	inha (ENSMAMG00000021227)	spega (ENSMAMG00000021230)	ENSMAMG00000025232	obsl1a (ENSMAMG00000021250)	ENSMAMG00000021276 #22	ENSMAMG00000021256 #22	ENSMAMG00000021265 #22	ENSMAMG00000021281	ENSMAMG00000021296	ENSMAMG00000021298	ENSMAMG00000021299	ENSMAMG00000021300	ENSMAMG00000021301	ENSMAMG00000021303	ENSMAMG00000021307	ENSMAMG00000021442	ENSMAMG00000023088	ENSMAMG00000026084	ENSMAMG00000021452	ENSMAMG00000021481	ENSMAMG00000021458	ENSMAMG00000026854
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a
Climbing perch	MODERN SPECIES	11	ENSATEG00000025958	KLF7 (ENSATEG00000016376)	ENSATEG00000016396	METTL21A (ENSATEG00000016424)	ENSATEG00000016462	ENSATEG00000016553	igfbp5a (ENSATEG00000016633)	igfbp2a (ENSATEG00000016648)	stk11ip (ENSATEG00000016659)	ENSATEG00000016685	inha (ENSATEG00000016691)	spega (ENSATEG00000016711)	ENSATEG00000028227	ENSATEG00000016858	ENSATEG00000029999	ENSATEG00000025533 #22	ENSATEG00000017105	ENSATEG00000017044	ENSATEG00000017119 #22	ENSATEG00000017165	ENSATEG00000028636	ENSATEG00000017222	ENSATEG00000017244	ENSATEG00000029263	ENSATEG00000017259	jagn1b (ENSATEG00000025315)	ENSATEG00000017276	ENSATEG00000017314	ENSATEG00000026081	ENSATEG00000028401	ENSATEG00000027904
Siamese fighting fish	MODERN SPECIES	10	erbb4a (ENSBSLG00000020537)	RAMP1 (ENSBSLG00000022196)	klf7a (ENSBSLG00000022198)	CREB1 (ENSBSLG00000022332)	mettl21a (ENSBSLG00000022369)	ENSBSLG00000022388	ENSBSLG00000022466	ENSBSLG00000022605	igfbp5a (ENSBSLG00000022607)	igfbp2a (ENSBSLG00000022803)	stk11ip (ENSBSLG00000022845)	ENSBSLG00000022921	inha (ENSBSLG00000022940)	CTDSP1 (ENSBSLG00000000123)	obsl1a (ENSBSLG00000000192)	ENSBSLG00000000359 #22	ENSBSLG00000000711	ENSBSLG00000000717	ATP1A1 (ENSBSLG00000000739) #22	ENSBSLG00000000800	ccdc28a (ENSBSLG00000000804)	ENSBSLG00000000806	ENSBSLG00000000818	FILIP1L (ENSBSLG00000000822)	ENSBSLG00000000829	jagn1b (ENSBSLG00000000831)	ENSBSLG00000000839	ENSBSLG00000000871	ENSBSLG00000000907	ENSBSLG00000000912	ENSBSLG00000000916
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000177880	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.e.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.e.a	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Seriola	ANCESTRAL SPECIES	44	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000168817.v	ENSGT00730000111912.A.b.h.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.e.a	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Greater amberjack	MODERN SPECIES	8	CREB1 (ENSSDUG00000022319)	mettl21a (ENSSDUG00000022324)	ENSSDUG00000022327	ENSSDUG00000022335	ENSSDUG00000022345	igfbp5a (ENSSDUG00000022364)	igfbp2a (ENSSDUG00000022368)	stk11ip (ENSSDUG00000022373)	ENSSDUG00000022382	inha (ENSSDUG00000022385)	ENSSDUG00000022391	ENSSDUG00000022396	spega (ENSSDUG00000022403)	CTDSP1 (ENSSDUG00000022464)	obsl1a (ENSSDUG00000022471)	ATP1A1 (ENSSDUG00000022483) #22	ENSSDUG00000022513 #22	ENSSDUG00000022521	ENSSDUG00000022523	ccdc28a (ENSSDUG00000022533)	ENSSDUG00000022543	FILIP1L (ENSSDUG00000022571)	ENSSDUG00000022575	COL8A1 (ENSSDUG00000022581)	jagn1b (ENSSDUG00000022584)	ENSSDUG00000022588	ENSSDUG00000022603	ENSSDUG00000022608	ENSSDUG00000022614	zgc:65895 (ENSSDUG00000022619)
Yellowtail amberjack	MODERN SPECIES	3005	ENSSLDG00000006025	ENSSLDG00000006080	ENSSLDG00000006146	ENSSLDG00000006240	igfbp5a (ENSSLDG00000006254)	igfbp2a (ENSSLDG00000006271)	stk11ip (ENSSLDG00000006300)	ENSSLDG00000006412	inha (ENSSLDG00000006429)	ENSSLDG00000006455	ENSSLDG00000006464	ENSSLDG00000006483	spega (ENSSLDG00000006523)	CTDSP1 (ENSSLDG00000006608)	obsl1a (ENSSLDG00000006670)	ENSSLDG00000006733 #22	ATP1A1 (ENSSLDG00000006796) #22	ENSSLDG00000006864	ccdc28a (ENSSLDG00000006899)	ENSSLDG00000006915	FILIP1L (ENSSLDG00000006948)	ENSSLDG00000006980	COL8A1 (ENSSLDG00000006992)
Barramundi perch	MODERN SPECIES	179	CREB1 (ENSLCAG00010021157)	ENSLCAG00010021151	mettl21a (ENSLCAG00010021149)	ENSLCAG00010021145	ENSLCAG00010021140	ENSLCAG00010021034	igfbp5a (ENSLCAG00010020973)	igfbp2a (ENSLCAG00010020967)	stk11ip (ENSLCAG00010020939)	ENSLCAG00010020929	inha (ENSLCAG00010020928)	spega (ENSLCAG00010020806)	CTDSP1 (ENSLCAG00010020750)	obsl1a (ENSLCAG00010020745)	ENSLCAG00010020727	ENSLCAG00010020514 #22	ENSLCAG00010020463	ATP1A1 (ENSLCAG00010015946) #22	ENSLCAG00010014899	ccdc28a (ENSLCAG00010014892)	ENSLCAG00010014867	FILIP1L (ENSLCAG00010014858)	COL8A1 (ENSLCAG00010014854)
Pleuronectoidei	ANCESTRAL SPECIES	62															ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.f	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b
Turbot	MODERN SPECIES		ENSSMAG00000001424	ALS2 (ENSSMAG00000001294)	ENSSMAG00000001269	ENSSMAG00000001247	ENSSMAG00000001218	PTPRN (ENSSMAG00000001165)	dnpep (ENSSMAG00000001132)	desmb (ENSSMAG00000001121)	tmem198b (ENSSMAG00000001083)	ENSSMAG00000001062	bin1b (ENSSMAG00000000969)	ENSSMAG00000000951	nhej1 (ENSSMAG00000000932)	ENSSMAG00000000890	ENSSMAG00000000792	ENSSMAG00000016653 #22	ENSSMAG00000000767	ENSSMAG00000015891	ENSSMAG00000015876	ENSSMAG00000015855	ENSSMAG00000015838	ENSSMAG00000015826	ENSSMAG00000015817	jagn1b (ENSSMAG00000015803)	ENSSMAG00000036569	ENSSMAG00000015752	ENSSMAG00000015714	ENSSMAG00000015740	ENSSMAG00000028514	ENSSMAG00000015699	ENSSMAG00000015691
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES	26						ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.c #22	ENSGT01100000263585	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000182882.A.b.b.f	ENSGT00390000009940	ENSGT00390000014242.k.c	ENSGT00940000159616	ENSGT00940000166110
Fugu	MODERN SPECIES	20	ENSTRUG00000028266	erbb4a (ENSTRUG00000014636)	ENSTRUG00000031585	SLC19A1 (ENSTRUG00000027993)	ENSTRUG00000026686	ENSTRUG00000029169	si:ch211-93g23.2 (ENSTRUG00000014609)	RAMP1 (ENSTRUG00000014618)	lancl1 (ENSTRUG00000008880)	igfbp5a (ENSTRUG00000020976)	igfbp2a (ENSTRUG00000013702)	stk11ip (ENSTRUG00000013564)	ENSTRUG00000003267	spega (ENSTRUG00000033164)	CTDSP1 (ENSTRUG00000023492)	atp1a1a.2 (ENSTRUG00000012850) #22	ENSTRUG00000029548	ENSTRUG00000012738	ccdc28a (ENSTRUG00000020271)	ENSTRUG00000012669	FILIP1L (ENSTRUG00000012610)	ENSTRUG00000024668	COL8A1 (ENSTRUG00000012571)	jagn1b (ENSTRUG00000012548)	ENSTRUG00000012417	si:ch211-114n24.6 (ENSTRUG00000023619)	bin1b (ENSTRUG00000012332)	nhej1 (ENSTRUG00000020336)	tdp2b (ENSTRUG00000012085)	gp91phox (ENSTRUG00000011809)	ENSTRUG00000011796
Tetraodon	MODERN SPECIES	18	abat (ENSTNIG00000008334)	CREB1 (ENSTNIG00000008335)	ENSTNIG00000008336	unc50 (ENSTNIG00000008337)	ENSTNIG00000008338	CREB1 (ENSTNIG00000008339)	mettl21a (ENSTNIG00000008340)	ENSTNIG00000008341	ENSTNIG00000008342	igfbp5a (ENSTNIG00000008343)	igfbp2a (ENSTNIG00000008344)	ENSTNIG00000008345	spega (ENSTNIG00000008346)	CTDSP1 (ENSTNIG00000008347)	obsl1a (ENSTNIG00000008348)	ENSTNIG00000006257 #22	ATP1A1 (ENSTNIG00000006396) #22	ENSTNIG00000004923	ccdc28a (ENSTNIG00000010267)	ENSTNIG00000001353	FILIP1L (ENSTNIG00000010266)	COL8A1 (ENSTNIG00000010265)	jagn1b (ENSTNIG00000010264)	ENSTNIG00000010263	ENSTNIG00000010262	ENSTNIG00000008898	tdp2b (ENSTNIG00000010260)	ENSTNIG00000010259	cybb (ENSTNIG00000010258)	ENSTNIG00000001786	ZNF513 (ENSTNIG00000010256)
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.c.b.d #22
Tetraodon	MODERN SPECIES	18	CREB1 (ENSTNIG00000008335)	ENSTNIG00000008336	unc50 (ENSTNIG00000008337)	ENSTNIG00000008338	CREB1 (ENSTNIG00000008339)	mettl21a (ENSTNIG00000008340)	ENSTNIG00000008341	ENSTNIG00000008342	igfbp5a (ENSTNIG00000008343)	igfbp2a (ENSTNIG00000008344)	ENSTNIG00000008345	spega (ENSTNIG00000008346)	CTDSP1 (ENSTNIG00000008347)	obsl1a (ENSTNIG00000008348)	ENSTNIG00000006257 #22	ATP1A1 (ENSTNIG00000006396) #22	ENSTNIG00000004923	ccdc28a (ENSTNIG00000010267)	ENSTNIG00000001353	FILIP1L (ENSTNIG00000010266)	COL8A1 (ENSTNIG00000010265)	jagn1b (ENSTNIG00000010264)	ENSTNIG00000010263	ENSTNIG00000010262	ENSTNIG00000008898	tdp2b (ENSTNIG00000010260)	ENSTNIG00000010259	cybb (ENSTNIG00000010258)	ENSTNIG00000001786	ZNF513 (ENSTNIG00000010256)	ENSTNIG00000010255
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a
Ballan wrasse	MODERN SPECIES	177	klf7a (ENSLBEG00000013988)	CREB1 (ENSLBEG00000014019)	mettl21a (ENSLBEG00000014047)	ENSLBEG00000014075	ENSLBEG00000014131	ENSLBEG00000014213	ENSLBEG00000014316	igfbp5a (ENSLBEG00000014331)	igfbp2a (ENSLBEG00000014348)	ENSLBEG00000014361	ENSLBEG00000014385	inha (ENSLBEG00000014403)	spega (ENSLBEG00000014437)	CTDSP1 (ENSLBEG00000014530)	obsl1a (ENSLBEG00000014588)	ENSLBEG00000014685 #22	ENSLBEG00000014730	ENSLBEG00000014756 #22	ENSLBEG00000014841	ccdc28a (ENSLBEG00000014880)	ENSLBEG00000014897	FILIP1L (ENSLBEG00000014937)	ENSLBEG00000014962	COL8A1 (ENSLBEG00000014993)	jagn1b (ENSLBEG00000015019)	ENSLBEG00000015056	ENSLBEG00000015070	ENSLBEG00000015085	jam2a (ENSLBEG00000015125)	mrpl39 (ENSLBEG00000015152)	rap2ab (ENSLBEG00000015171)
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.f	ENSGT01030000234635.a.b.a.b.a
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a
Gilthead seabream	MODERN SPECIES	16	klf7a (ENSSAUG00010024183)	CREB1 (ENSSAUG00010024184)	mettl21a (ENSSAUG00010024187)	ENSSAUG00010024189	ENSSAUG00010024190	ENSSAUG00010024206	igfbp5a (ENSSAUG00010024703)	igfbp2a (ENSSAUG00010024704)	stk11ip (ENSSAUG00010024706)	ENSSAUG00010024714	ENSSAUG00010024733	ENSSAUG00010024748	spega (ENSSAUG00010024860)	CTDSP1 (ENSSAUG00010024864)	obsl1a (ENSSAUG00010024878)	atp1a1a.2 (ENSSAUG00010025170) #22	ENSSAUG00010026956	ENSSAUG00010026957	ccdc28a (ENSSAUG00010026959)	ENSSAUG00010026962	FILIP1L (ENSSAUG00010026967)	ENSSAUG00010026972	ENSSAUG00010026974	jagn1b (ENSSAUG00010026976)	ENSSAUG00010026988	ENSSAUG00010026999	ENSSAUG00010027002	ENSSAUG00010027003	ENSSAUG00010027004	ENSSAUG00010027006	ENSSAUG00010027007
Perciformes	ANCESTRAL SPECIES	24	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00940000154695.d.b.b	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Pike perch	MODERN SPECIES	9	ENSSLUG00000005115	mettl21a (ENSSLUG00000005095)	CREB1 (ENSSLUG00000005076)	klf7a (ENSSLUG00000026119)	si:ch211-93g23.2 (ENSSLUG00000026118)	si:ch211-93g23.2 (ENSSLUG00000026117)	RAMP1 (ENSSLUG00000026116)	erbb4a (ENSSLUG00000026115)	lancl1 (ENSSLUG00000026114)	mylz3 (ENSSLUG00000026113)	acadl (ENSSLUG00000026112)	ENSSLUG00000026111	ENSSLUG00000026109	ENSSLUG00000026108	ENSSLUG00000026107	ENSSLUG00000026087 #22	ENSSLUG00000026063	ATP1A1 (ENSSLUG00000026029) #22	ENSSLUG00000026021	ENSSLUG00000026020	ccdc28a (ENSSLUG00000026019)	ENSSLUG00000026018	FILIP1L (ENSSLUG00000026015)	ENSSLUG00000026014	COL8A1 (ENSSLUG00000026013)	jagn1b (ENSSLUG00000026012)	ENSSLUG00000026010	ENSSLUG00000025996	ENSSLUG00000025991	ENSSLUG00000025990	ENSSLUG00000025987
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000161679.b	ENSGT00940000154443.e	ENSGT00940000159196	ENSGT00940000153981.A	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000176837	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000154344.b
Stickleback	MODERN SPECIES		ENSGACG00000014241	gart (ENSGACG00000014244)	n6amt1 (ENSGACG00000014248)	jagn1b (ENSGACG00000014256)	ENSGACG00000014268	ENSGACG00000014274	igfbp5a (ENSGACG00000014275)	igfbp2a (ENSGACG00000014280)	stk11ip (ENSGACG00000014289)	ENSGACG00000014294	inha (ENSGACG00000014296)	spega (ENSGACG00000014299)	CTDSP1 (ENSGACG00000014313)	ENSGACG00000014321	obsl1a (ENSGACG00000014323)	atp1a1a.2 (ENSGACG00000014324) #22	ENSGACG00000014345	ccdc28a (ENSGACG00000014349)	ENSGACG00000014353	FILIP1L (ENSGACG00000014358)	ENSGACG00000014367	ENSGACG00000014371	COL8A1 (ENSGACG00000014373)	jagn1b (ENSGACG00000014376)	ENSGACG00000014378	GPR180 (ENSGACG00000014388)	ENSGACG00000014396	ENSGACG00000014407	ENSGACG00000014419 #25	ENSGACG00000014424	fam184aa (ENSGACG00000014429)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f
Atherinomorphae	ANCESTRAL SPECIES	24	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375
Cyprinodontiformes	ANCESTRAL SPECIES	26	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375
Cyprinodontoidei	ANCESTRAL SPECIES	26	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000005130
NAME_4	ANCESTRAL SPECIES	90	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000163418.A.a.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154756.B.v	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260459	ENSGT00940000154840.b.f.c.a #22
Mummichog	MODERN SPECIES	260		STS (ENSFHEG00000017516)	ENSFHEG00000017510	ENSFHEG00000000803	ENSFHEG00000017339	igfbp5a (ENSFHEG00000017332)	igfbp2a (ENSFHEG00000017325)	stk11ip (ENSFHEG00000017294)	ENSFHEG00000017272	inha (ENSFHEG00000017229)	ENSFHEG00000017206	ENSFHEG00000017194	spega (ENSFHEG00000017168)	CTDSP1 (ENSFHEG00000017160)	obsl1a (ENSFHEG00000017134)	ATP1A1 (ENSFHEG00000017054) #22	ENSFHEG00000016987	ENSFHEG00000016972 #22
Sheepshead minnow	MODERN SPECIES	207	ENSCVAG00000012359	ENSCVAG00000012393	ENSCVAG00000012408	ENSCVAG00000012448	igfbp5a (ENSCVAG00000012453)	igfbp2a (ENSCVAG00000012461)	ENSCVAG00000012470	ENSCVAG00000012479	inha (ENSCVAG00000012495)	ENSCVAG00000012509	ENSCVAG00000012539	ENSCVAG00000012559	CTDSP1 (ENSCVAG00000012587)	obsl1a (ENSCVAG00000012666)	ENSCVAG00000012679	ENSCVAG00000012732 #22	ENSCVAG00000012745	ATP1A1 (ENSCVAG00000012799) #22	ENSCVAG00000012807
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000005130
Poecilia	ANCESTRAL SPECIES	45	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a
NAME_6	ANCESTRAL SPECIES	232	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01090000260600	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a
Amazon molly	MODERN SPECIES	460	si:ch211-93g23.2 (ENSPFOG00000013857)	klf7a (ENSPFOG00000013890)	CREB1 (ENSPFOG00000023773)	CREB1 (ENSPFOG00000013920)	mettl21a (ENSPFOG00000014013)	ENSPFOG00000014028	ENSPFOG00000014114	igfbp5a (ENSPFOG00000014348)	igfbp2a (ENSPFOG00000014380)	stk11ip (ENSPFOG00000014410)	ENSPFOG00000014526	inha (ENSPFOG00000014537)	spega (ENSPFOG00000014558)	CTDSP1 (ENSPFOG00000014754)	obsl1a (ENSPFOG00000014777)	ATP1A1 (ENSPFOG00000014864) #22	ENSPFOG00000015178 #22	ENSPFOG00000015503
Sailfin molly	MODERN SPECIES	1041										ENSPLAG00000007413	inha (ENSPLAG00000007395)	ENSPLAG00000007380	ENSPLAG00000007361	CTDSP1 (ENSPLAG00000007347)	obsl1a (ENSPLAG00000007337)	ATP1A1 (ENSPLAG00000007239) #22	ENSPLAG00000007193	ENSPLAG00000007135 #22
Guppy	MODERN SPECIES	450	CREB1 (ENSPREG00000016872)	mettl21a (ENSPREG00000016885)	ENSPREG00000016892	ENSPREG00000016919	ENSPREG00000016961	igfbp5a (ENSPREG00000017043)	igfbp2a (ENSPREG00000017056)	ENSPREG00000017069	ENSPREG00000017083	ENSPREG00000017092	inha (ENSPREG00000017100)	spega (ENSPREG00000017121)	ENSPREG00000017206	CTDSP1 (ENSPREG00000017262)	obsl1a (ENSPREG00000017290)	ENSPREG00000017415 #22	ENSPREG00000017463	ATP1A1 (ENSPREG00000017481) #22	ENSPREG00000017519	ENSPREG00000017586	ENSPREG00000017596	ENSPREG00000017610	ENSPREG00000017622	atg3 (ENSPREG00000017638)	SLC19A2 (ENSPREG00000017667)	ENSPREG00000017679	ENSPREG00000017697	atp1b1b (ENSPREG00000017732)	CNGA3 (ENSPREG00000017756)	UBE3A (ENSPREG00000017799)	ddx4 (ENSPREG00000017840)
Platyfish	MODERN SPECIES	16	klf7a (ENSXMAG00000023355)	CREB1 (ENSXMAG00000007848)	mettl21a (ENSXMAG00000026231)	ENSXMAG00000027034	ENSXMAG00000029269	ENSXMAG00000021456	ENSXMAG00000007804	igfbp5a (ENSXMAG00000007799)	igfbp2a (ENSXMAG00000024734)	stk11ip (ENSXMAG00000029049)	ENSXMAG00000000509	inha (ENSXMAG00000000511)	spega (ENSXMAG00000000514)	CTDSP1 (ENSXMAG00000000525)	obsl1a (ENSXMAG00000000533)	ENSXMAG00000013209 #22	ENSXMAG00000028735	ATP1A1 (ENSXMAG00000008520) #22	ENSXMAG00000009972	ccdc28a (ENSXMAG00000022750)	ENSXMAG00000009965	FILIP1L (ENSXMAG00000009955)	COL8A1 (ENSXMAG00000022370)	jagn1b (ENSXMAG00000009941)	ENSXMAG00000009933	ENSXMAG00000009878	ENSXMAG00000029739	ENSXMAG00000009853	ENSXMAG00000009852	ENSXMAG00000026199	ENSXMAG00000020169
Aplocheiloidei	ANCESTRAL SPECIES	80	ENSGT00940000154695.d.b.b	ENSGT00940000159224.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000171777	ENSGT00940000158272.c.a
Mangrove rivulus	MODERN SPECIES	96	ENSKMAG00000003378	CREB1 (ENSKMAG00000003336)	mettl21a (ENSKMAG00000003323)	ENSKMAG00000003283	ENSKMAG00000003227	ENSKMAG00000003134	igfbp5a (ENSKMAG00000002961)	igfbp2a (ENSKMAG00000002915)	stk11ip (ENSKMAG00000002880)	ENSKMAG00000002850	inha (ENSKMAG00000002829)	ENSKMAG00000002805	CTDSP1 (ENSKMAG00000002718)	ENSKMAG00000002688	obsl1a (ENSKMAG00000002614)	ENSKMAG00000002529 #22	ATP1A1 (ENSKMAG00000002471) #22	ENSKMAG00000002423	ccdc28a (ENSKMAG00000002405)	ENSKMAG00000002348	FILIP1L (ENSKMAG00000002312)	ENSKMAG00000002299	COL8A1 (ENSKMAG00000002289)	ENSKMAG00000002104
Oryzias	ANCESTRAL SPECIES	55	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a
Oryzias_a	DUPLICATION
Oryzias_a	ANCESTRAL SPECIES	76	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.e #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000158272.c.a	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00390000017860.a.b.f	ENSGT00940000155773.a
Japanese Medaka HdrR	MODERN SPECIES	11	si:ch211-93g23.2 (ENSORLG00000002372)	KLF7 (ENSORLG00000030422)	ENSORLG00000002359	mettl21a (ENSORLG00000002331)	ENSORLG00000002319	ENSORLG00000022647	ENSORLG00000002301	igfbp5a (ENSORLG00000002243)	igfbp2a (ENSORLG00000022125)	stk11ip (ENSORLG00000002225)	ENSORLG00000002202	inha (ENSORLG00000002184)	spega (ENSORLG00000002177)	CTDSP1 (ENSORLG00000002151)	obsl1a (ENSORLG00000002135)	ENSORLG00000002047 #22	ATP1A1 (ENSORLG00000018557) #22	ENSORLG00000027612	prox1a (ENSORLG00000001996)	ccdc28a (ENSORLG00000026855)	ENSORLG00000024492	FILIP1L (ENSORLG00000001976)	ENSORLG00000001973	COL8A1 (ENSORLG00000001968)	ACTR3 (ENSORLG00000001964)	ENSORLG00000028132	NCKAP5 (ENSORLG00000001953)	gpd1c (ENSORLG00000001939)	OSBPL11 (ENSORLG00000001914)	ENSORLG00000023000	pou3f3b (ENSORLG00000001901)
Chinese medaka	MODERN SPECIES	151													ENSOSIG00000018350	ENSOSIG00000018351	inha (ENSOSIG00000018353)	ATP1A1 (ENSOSIG00000018390) #22	ENSOSIG00000018640
Oryzias_a	ANCESTRAL SPECIES	113	ENSGT00940000153309.a	ENSGT00940000166665.c	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00940000157440.m.b	ENSGT00950000182803.B.d.b	ENSGT00980000198599	ENSGT00940000162067	ENSGT00940000158619.p	ENSGT00390000006915.c.c.a	ENSGT00390000013608	ENSGT00530000063970.e	ENSGT00940000156712.a	ENSGT00950000182837.b.b.c.b	ENSGT01040000241517.a	ENSGT00940000154840.b.f.c.b.f #22
Japanese Medaka HdrR	MODERN SPECIES	11	HDAC4 (ENSORLG00000029432)	PRPS2 (ENSORLG00000006669)	tmsb4x (ENSORLG00000026258)	ENSORLG00000022250	ENSORLG00000006628	ENSORLG00000006619	gemin8 (ENSORLG00000006606)	ENSORLG00000028378	SEMA5B (ENSORLG00000006593)	cacnb4.1 (ENSORLG00000006530)	ENSORLG00000029417	ENSORLG00000029925	ENSORLG00000022465	ENSORLG00000025191	ENSORLG00000029156	ENSORLG00000002122 #22	ENSORLG00000022214	arpc2 (ENSORLG00000006502)	ENSORLG00000029743	ENSORLG00000006480	SLC19A1 (ENSORLG00000006475)	ENSORLG00000025970	cyp4f3 (ENSORLG00000006454)	ENSORLG00000006418	ENSORLG00000029425	ENSORLG00000006397	FARP1 (ENSORLG00000006374)	ggact.3 (ENSORLG00000026452)	arl13b (ENSORLG00000006350)	ENSORLG00000025415	NCAM2 (ENSORLG00000006321)
Chinese medaka	MODERN SPECIES	5314			ENSOSIG00000014870	ENSOSIG00000014867	ENSOSIG00000014866	PRPS2 (ENSOSIG00000014513)	ENSOSIG00000014512	ENSOSIG00000014511	ENSOSIG00000014508	rab9a (ENSOSIG00000014507)	ENSOSIG00000014505	gemin8 (ENSOSIG00000014504)	ENSOSIG00000014502	CACNB4 (ENSOSIG00000010663)	ENSOSIG00000010658	ATP1A1 (ENSOSIG00000010030) #22
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000159224.b	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158272.c.a	ENSGT00940000169105	ENSGT00950000182852.A.a.b.c	ENSGT00940000158839	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00390000003758
Indian medaka	MODERN SPECIES	20	mettl21a (ENSOMEG00000013683)	ENSOMEG00000013696	ENSOMEG00000013727	ENSOMEG00000013932	igfbp5a (ENSOMEG00000013983)	igfbp2a (ENSOMEG00000014012)	stk11ip (ENSOMEG00000014048)	ENSOMEG00000014072	inha (ENSOMEG00000014087)	ENSOMEG00000014099	ENSOMEG00000014128	ENSOMEG00000014144	ENSOMEG00000014156	CTDSP1 (ENSOMEG00000014176)	obsl1a (ENSOMEG00000014266)	ATP1A1 (ENSOMEG00000014366) #22	ENSOMEG00000014415 #22	ENSOMEG00000014454	ccdc28a (ENSOMEG00000014477)	COL8A1 (ENSOMEG00000014510)	ENSOMEG00000014548	atp6v1c1a (ENSOMEG00000014607)	azin1a (ENSOMEG00000014684)	ENSOMEG00000000368	ncalda (ENSOMEG00000014721)	ubr5 (ENSOMEG00000014794)	ENSOMEG00000014819	ENSOMEG00000014858	LAPTM4B (ENSOMEG00000014886)	MATN2 (ENSOMEG00000015004)	pou3f3b (ENSOMEG00000015038)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000161126	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a
Pomacentridae	ANCESTRAL SPECIES	111												ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000154317.b	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496
Pomacentridae_A	ANCESTRAL SPECIES	115											ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.g	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496	ENSGT00940000156597.a.b.a
Amphiprion	ANCESTRAL SPECIES	135											ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT01100000263585.g	ENSGT00940000154840.b.f.c.b #22	ENSGT01100000263585.h	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000155065.xb.b	ENSGT00390000002215.i.b	ENSGT00530000063607.b.j.b	ENSGT00390000003114.e.b.a	ENSGT00940000158398	ENSGT00940000164385.a.a.a.b	ENSGT00390000011204	ENSGT00640000091496	ENSGT00940000156597.a.b.a
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000014954	chn1 (ENSAPEG00000014893)	zgc:65895 (ENSAPEG00000014874)	ENSAPEG00000014854	ENSAPEG00000014844	ENSAPEG00000014824	FARP1 (ENSAPEG00000014702)	ggact.3 (ENSAPEG00000014676)	arl13b (ENSAPEG00000014654)	NCAM2 (ENSAPEG00000014541)	ENSAPEG00000014463	inha (ENSAPEG00000014437)	spega (ENSAPEG00000014333)	CTDSP1 (ENSAPEG00000014300)	obsl1a (ENSAPEG00000014228)	ENSAPEG00000014141 #22	ENSAPEG00000014118	ATP1A1 (ENSAPEG00000014030) #22	ENSAPEG00000013974	ccdc28a (ENSAPEG00000013881)	ENSAPEG00000013811	ENSAPEG00000013789	FILIP1L (ENSAPEG00000013770)	actr3 (ENSAPEG00000013673)	LYPD1 (ENSAPEG00000013659)	NCKAP5 (ENSAPEG00000013630)	gpd1c (ENSAPEG00000013535)	OSBPL11 (ENSAPEG00000013486)	pou3f3b (ENSAPEG00000013456)	mrps9 (ENSAPEG00000013413)	UNC80 (ENSAPEG00000013145)
Clown anemonefish	MODERN SPECIES	598									ENSAOCG00000020505	NCAM2 (ENSAOCG00000020562)	inha (ENSAOCG00000020577)	spega (ENSAOCG00000020690)	CTDSP1 (ENSAOCG00000001528)	obsl1a (ENSAOCG00000020800)	ENSAOCG00000020818	ENSAOCG00000020893 #22	ENSAOCG00000020904	ATP1A1 (ENSAOCG00000020990) #22	ENSAOCG00000021046	ccdc28a (ENSAOCG00000021060)	ENSAOCG00000021086	FILIP1L (ENSAOCG00000021107)
Spiny chromis	MODERN SPECIES	3030																ATP1A1 (ENSAPOG00000014081) #22	ENSAPOG00000013973
Bicolor damselfish	MODERN SPECIES	584								ENSSPAG00000007531	obsl1a (ENSSPAG00000007485)	ENSSPAG00000007455	ccdc28a (ENSSPAG00000007443)	ENSSPAG00000007429	ENSSPAG00000007417	FILIP1L (ENSSPAG00000007387)	ENSSPAG00000007374	ATP1A1 (ENSSPAG00000007326) #22	ENSSPAG00000007272 #22	ENSSPAG00000007254	ENSSPAG00000007241	CTDSP1 (ENSSPAG00000007192)	inha (ENSSPAG00000007175)
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837.b.b	ENSGT00940000177880	ENSGT00940000176837.b.a.b	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584
Pseudocrenilabrinae_A	DUPLICATION
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877
Zebra mbuna	MODERN SPECIES	1105	cyp20a1 (ENSMZEG00005017435)	tmem237b (ENSMZEG00005017445)	MPP4 (ENSMZEG00005017460)	ALS2 (ENSMZEG00005017474)	CHRNA2 (ENSMZEG00005017497)	ENSMZEG00005017505	ENSMZEG00005017509	ENSMZEG00005017512	CTDSP1 (ENSMZEG00005017519)	obsl1a (ENSMZEG00005017536)	ENSMZEG00005017594 #22	ENSMZEG00005017608	ENSMZEG00005017609 #22	ENSMZEG00005017620	ENSMZEG00005017626 #22	ENSMZEG00005017639 #22	ENSMZEG00005017648	ENSMZEG00005017652	ATP1A1 (ENSMZEG00005017655) #22	ENSMZEG00005017685	ENSMZEG00005017697	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017719	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017736	zgc:172122 (ENSMZEG00005017744)	u2af1 (ENSMZEG00005017751)	cbsa (ENSMZEG00005017757)	ENSMZEG00005017767	ENSMZEG00005017774	ENSMZEG00005017780
Eastern happy	MODERN SPECIES	14	cyp20a1 (ENSACLG00000015505)	tmem237b (ENSACLG00000015581)	MPP4 (ENSACLG00000015624)	ENSACLG00000015698	ALS2 (ENSACLG00000015714)	CHRNA2 (ENSACLG00000015825)	spega (ENSACLG00000015860)	CTDSP1 (ENSACLG00000015973)	obsl1a (ENSACLG00000016009)	ENSACLG00000016079	ENSACLG00000016283 #22	ENSACLG00000023442	ENSACLG00000023458 #22	ENSACLG00000023491	ENSACLG00000023504 #22	ENSACLG00000023544 #22	ENSACLG00000023606	ATP1A1 (ENSACLG00000023619) #22	ENSACLG00000023651	ENSACLG00000023697	ENSACLG00000023720	ccdc28a (ENSACLG00000023727)	ENSACLG00000023736	FILIP1L (ENSACLG00000023767)	ENSACLG00000023781	ENSACLG00000023818	jagn1b (ENSACLG00000023842)	ENSACLG00000023823	ENSACLG00000023863	ENSACLG00000023922	MTRF1 (ENSACLG00000023945)
P. nyererei	MODERN SPECIES	540						CHRNA2 (ENSPNYG00000022083)	spega (ENSPNYG00000022026)	CTDSP1 (ENSPNYG00000021982)	obsl1a (ENSPNYG00000021916)	ENSPNYG00000021892	ENSPNYG00000021881 #22	ENSPNYG00000021866 #22	ENSPNYG00000021858	ENSPNYG00000021840 #22	ENSPNYG00000021826	ENSPNYG00000021807 #22	ATP1A1 (ENSPNYG00000021779) #22	ENSPNYG00000021759	ENSPNYG00000021736	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021682	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021654	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021622
Burton s mouthbrooder	MODERN SPECIES	492				CHRNA2 (ENSHBUG00000021704)	ENSHBUG00000021591	ENSHBUG00000021574	ENSHBUG00000021567	ENSHBUG00000021559	CTDSP1 (ENSHBUG00000021545)	obsl1a (ENSHBUG00000021477)	ENSHBUG00000021421 #22	ENSHBUG00000021359	ENSHBUG00000000658 #22	ENSHBUG00000021275 #22	ENSHBUG00000021193	ENSHBUG00000021178 #22	ENSHBUG00000021146	ATP1A1 (ENSHBUG00000021121) #22	ENSHBUG00000021064	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021030	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000020967	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020958	ENSHBUG00000020932	ENSHBUG00000020880	ENSHBUG00000000644	ENSHBUG00000020861	ENSHBUG00000020842
Lyretail cichlid	MODERN SPECIES	315	tmem237b (ENSNBRG00000014203)	MPP4 (ENSNBRG00000014143)	ALS2 (ENSNBRG00000014044)	CHRNA2 (ENSNBRG00000013966)	ENSNBRG00000013908	ENSNBRG00000013896	CTDSP1 (ENSNBRG00000013840)	obsl1a (ENSNBRG00000013788)	ENSNBRG00000013779	ATP1A1 (ENSNBRG00000008877) #22	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000005416) #22	ENSNBRG00000005153	ENSNBRG00000005085 #22	ENSNBRG00000005065	ENSNBRG00000004998 #22	ATP1A1 (ENSNBRG00000004921) #22	ENSNBRG00000004895	ENSNBRG00000004876	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004805	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004754	COL8A1 (ENSNBRG00000004746)	jagn1b (ENSNBRG00000004740)	ENSNBRG00000004673	ENSNBRG00000004655	MTRF1 (ENSNBRG00000004634)	ENSNBRG00000004614	ENSNBRG00000004607	chn1 (ENSNBRG00000004568)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956
Burton s mouthbrooder	MODERN SPECIES	492						CHRNA2 (ENSHBUG00000021704)	ENSHBUG00000021591	ENSHBUG00000021574	ENSHBUG00000021567	ENSHBUG00000021559	CTDSP1 (ENSHBUG00000021545)	obsl1a (ENSHBUG00000021477)	ENSHBUG00000021421 #22	ENSHBUG00000021359	ENSHBUG00000000658 #22	ENSHBUG00000021275 #22	ENSHBUG00000021193	ENSHBUG00000021178 #22	ENSHBUG00000021146	ATP1A1 (ENSHBUG00000021121) #22	ENSHBUG00000021064	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021030	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000020967	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020958	ENSHBUG00000020932	ENSHBUG00000020880	ENSHBUG00000000644	ENSHBUG00000020861
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b
P. nyererei	MODERN SPECIES	540								CHRNA2 (ENSPNYG00000022083)	spega (ENSPNYG00000022026)	CTDSP1 (ENSPNYG00000021982)	obsl1a (ENSPNYG00000021916)	ENSPNYG00000021892	ENSPNYG00000021881 #22	ENSPNYG00000021866 #22	ENSPNYG00000021858	ENSPNYG00000021840 #22	ENSPNYG00000021826	ENSPNYG00000021807 #22	ATP1A1 (ENSPNYG00000021779) #22	ENSPNYG00000021759	ENSPNYG00000021736	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021682	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021654	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021622
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956
Zebra mbuna	MODERN SPECIES	1105	abi2b (ENSMZEG00005017427)	cyp20a1 (ENSMZEG00005017435)	tmem237b (ENSMZEG00005017445)	MPP4 (ENSMZEG00005017460)	ALS2 (ENSMZEG00005017474)	CHRNA2 (ENSMZEG00005017497)	ENSMZEG00005017505	ENSMZEG00005017509	ENSMZEG00005017512	CTDSP1 (ENSMZEG00005017519)	obsl1a (ENSMZEG00005017536)	ENSMZEG00005017594 #22	ENSMZEG00005017608	ENSMZEG00005017609 #22	ENSMZEG00005017620	ENSMZEG00005017626 #22	ENSMZEG00005017639 #22	ENSMZEG00005017648	ENSMZEG00005017652	ATP1A1 (ENSMZEG00005017655) #22	ENSMZEG00005017685	ENSMZEG00005017697	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017719	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017736	zgc:172122 (ENSMZEG00005017744)	u2af1 (ENSMZEG00005017751)	cbsa (ENSMZEG00005017757)	ENSMZEG00005017767	ENSMZEG00005017774
Eastern happy	MODERN SPECIES	14	abi2b (ENSACLG00000015464)	cyp20a1 (ENSACLG00000015505)	tmem237b (ENSACLG00000015581)	MPP4 (ENSACLG00000015624)	ENSACLG00000015698	ALS2 (ENSACLG00000015714)	CHRNA2 (ENSACLG00000015825)	spega (ENSACLG00000015860)	CTDSP1 (ENSACLG00000015973)	obsl1a (ENSACLG00000016009)	ENSACLG00000016079	ENSACLG00000016283 #22	ENSACLG00000023442	ENSACLG00000023458 #22	ENSACLG00000023491	ENSACLG00000023504 #22	ENSACLG00000023544 #22	ENSACLG00000023606	ATP1A1 (ENSACLG00000023619) #22	ENSACLG00000023651	ENSACLG00000023697	ENSACLG00000023720	ccdc28a (ENSACLG00000023727)	ENSACLG00000023736	FILIP1L (ENSACLG00000023767)	ENSACLG00000023781	ENSACLG00000023818	jagn1b (ENSACLG00000023842)	ENSACLG00000023823	ENSACLG00000023863	ENSACLG00000023922
Lyretail cichlid	MODERN SPECIES	315	ENSNBRG00000014254	cyp20a1 (ENSNBRG00000014215)	tmem237b (ENSNBRG00000014203)	MPP4 (ENSNBRG00000014143)	ALS2 (ENSNBRG00000014044)	CHRNA2 (ENSNBRG00000013966)	ENSNBRG00000013908	ENSNBRG00000013896	CTDSP1 (ENSNBRG00000013840)	obsl1a (ENSNBRG00000013788)	ENSNBRG00000013779	ATP1A1 (ENSNBRG00000008877) #22	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000005416) #22	ENSNBRG00000005153	ENSNBRG00000005085 #22	ENSNBRG00000005065	ENSNBRG00000004998 #22	ATP1A1 (ENSNBRG00000004921) #22	ENSNBRG00000004895	ENSNBRG00000004876	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004805	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004754	COL8A1 (ENSNBRG00000004746)	jagn1b (ENSNBRG00000004740)	ENSNBRG00000004673	ENSNBRG00000004655	MTRF1 (ENSNBRG00000004634)	ENSNBRG00000004614
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	971	ENSACIG00000003065	ENSACIG00000003047	igfbp5a (ENSACIG00000002677)	igfbp2a (ENSACIG00000002653)	ENSACIG00000002626	ENSACIG00000002543	inha (ENSACIG00000002528)	spega (ENSACIG00000002119)	CTDSP1 (ENSACIG00000002070)	obsl1a (ENSACIG00000002022)	ENSACIG00000002015	ENSACIG00000001965 #22	ENSACIG00000001901 #22	ENSACIG00000001848 #22	ENSACIG00000001836	ATP1A1 (ENSACIG00000001788) #22	ENSACIG00000001741 #22	ENSACIG00000001713	ccdc28a (ENSACIG00000001700)	ENSACIG00000001652	FILIP1L (ENSACIG00000001638)	ENSACIG00000001621	COL8A1 (ENSACIG00000001609)	jagn1b (ENSACIG00000001599)	ENSACIG00000001551	ENSACIG00000001515	MTRF1 (ENSACIG00000001495)	ENSACIG00000001488	ENSACIG00000001473	ENSACIG00000001459
Midas cichlid	MODERN SPECIES	971		ENSACIG00000003070	ENSACIG00000003065	ENSACIG00000003047	igfbp5a (ENSACIG00000002677)	igfbp2a (ENSACIG00000002653)	ENSACIG00000002626	ENSACIG00000002543	inha (ENSACIG00000002528)	spega (ENSACIG00000002119)	CTDSP1 (ENSACIG00000002070)	obsl1a (ENSACIG00000002022)	ENSACIG00000002015	ENSACIG00000001965 #22	ENSACIG00000001901 #22	ENSACIG00000001848 #22	ENSACIG00000001836	ATP1A1 (ENSACIG00000001788) #22	ENSACIG00000001741 #22	ENSACIG00000001713	ccdc28a (ENSACIG00000001700)	ENSACIG00000001652	FILIP1L (ENSACIG00000001638)	ENSACIG00000001621	COL8A1 (ENSACIG00000001609)	jagn1b (ENSACIG00000001599)	ENSACIG00000001551	ENSACIG00000001515	MTRF1 (ENSACIG00000001495)	ENSACIG00000001488	ENSACIG00000001473
Cichlidae	DUPLICATION
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837.b.b	ENSGT00940000177880	ENSGT00940000176837.b.a.b	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B
Burton s mouthbrooder	MODERN SPECIES	492							CHRNA2 (ENSHBUG00000021704)	ENSHBUG00000021591	ENSHBUG00000021574	ENSHBUG00000021567	ENSHBUG00000021559	CTDSP1 (ENSHBUG00000021545)	obsl1a (ENSHBUG00000021477)	ENSHBUG00000021421 #22	ENSHBUG00000021359	ENSHBUG00000000658 #22	ENSHBUG00000021275 #22	ENSHBUG00000021193	ENSHBUG00000021178 #22	ENSHBUG00000021146	ATP1A1 (ENSHBUG00000021121) #22	ENSHBUG00000021064	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021030	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000020967	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020958	ENSHBUG00000020932	ENSHBUG00000020880	ENSHBUG00000000644
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005017403	ENSMZEG00005017418	abi2b (ENSMZEG00005017427)	cyp20a1 (ENSMZEG00005017435)	tmem237b (ENSMZEG00005017445)	MPP4 (ENSMZEG00005017460)	ALS2 (ENSMZEG00005017474)	CHRNA2 (ENSMZEG00005017497)	ENSMZEG00005017505	ENSMZEG00005017509	ENSMZEG00005017512	CTDSP1 (ENSMZEG00005017519)	obsl1a (ENSMZEG00005017536)	ENSMZEG00005017594 #22	ENSMZEG00005017608	ENSMZEG00005017609 #22	ENSMZEG00005017620	ENSMZEG00005017626 #22	ENSMZEG00005017639 #22	ENSMZEG00005017648	ENSMZEG00005017652	ATP1A1 (ENSMZEG00005017655) #22	ENSMZEG00005017685	ENSMZEG00005017697	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017719	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017736	zgc:172122 (ENSMZEG00005017744)	u2af1 (ENSMZEG00005017751)	cbsa (ENSMZEG00005017757)
Eastern happy	MODERN SPECIES	14	ENSACLG00000015398	ENSACLG00000015448	abi2b (ENSACLG00000015464)	cyp20a1 (ENSACLG00000015505)	tmem237b (ENSACLG00000015581)	MPP4 (ENSACLG00000015624)	ENSACLG00000015698	ALS2 (ENSACLG00000015714)	CHRNA2 (ENSACLG00000015825)	spega (ENSACLG00000015860)	CTDSP1 (ENSACLG00000015973)	obsl1a (ENSACLG00000016009)	ENSACLG00000016079	ENSACLG00000016283 #22	ENSACLG00000023442	ENSACLG00000023458 #22	ENSACLG00000023491	ENSACLG00000023504 #22	ENSACLG00000023544 #22	ENSACLG00000023606	ATP1A1 (ENSACLG00000023619) #22	ENSACLG00000023651	ENSACLG00000023697	ENSACLG00000023720	ccdc28a (ENSACLG00000023727)	ENSACLG00000023736	FILIP1L (ENSACLG00000023767)	ENSACLG00000023781	ENSACLG00000023818	jagn1b (ENSACLG00000023842)	ENSACLG00000023823
P. nyererei	MODERN SPECIES	540										CHRNA2 (ENSPNYG00000022083)	spega (ENSPNYG00000022026)	CTDSP1 (ENSPNYG00000021982)	obsl1a (ENSPNYG00000021916)	ENSPNYG00000021892	ENSPNYG00000021881 #22	ENSPNYG00000021866 #22	ENSPNYG00000021858	ENSPNYG00000021840 #22	ENSPNYG00000021826	ENSPNYG00000021807 #22	ATP1A1 (ENSPNYG00000021779) #22	ENSPNYG00000021759	ENSPNYG00000021736	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021682	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021654	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021622
Lyretail cichlid	MODERN SPECIES	315	ENSNBRG00000014286	abi2b (ENSNBRG00000014263)	ENSNBRG00000014254	cyp20a1 (ENSNBRG00000014215)	tmem237b (ENSNBRG00000014203)	MPP4 (ENSNBRG00000014143)	ALS2 (ENSNBRG00000014044)	CHRNA2 (ENSNBRG00000013966)	ENSNBRG00000013908	ENSNBRG00000013896	CTDSP1 (ENSNBRG00000013840)	obsl1a (ENSNBRG00000013788)	ENSNBRG00000013779	ATP1A1 (ENSNBRG00000008877) #22	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000005416) #22	ENSNBRG00000005153	ENSNBRG00000005085 #22	ENSNBRG00000005065	ENSNBRG00000004998 #22	ATP1A1 (ENSNBRG00000004921) #22	ENSNBRG00000004895	ENSNBRG00000004876	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004805	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004754	COL8A1 (ENSNBRG00000004746)	jagn1b (ENSNBRG00000004740)	ENSNBRG00000004673	ENSNBRG00000004655
Nile tilapia	MODERN SPECIES	14	ENSONIG00000034786	ENSONIG00000012316	ENSONIG00000034745	GALNT8 (ENSONIG00000010313)	abi2b (ENSONIG00000012331)	cyp20a1 (ENSONIG00000012336)	tmem237b (ENSONIG00000012346)	MPP4 (ENSONIG00000032396)	ALS2 (ENSONIG00000027435)	CHRNA2 (ENSONIG00000012349)	spega (ENSONIG00000012351)	CTDSP1 (ENSONIG00000012356)	obsl1a (ENSONIG00000027470)	ENSONIG00000012358 #22	ENSONIG00000035563	ENSONIG00000032416 #22	ENSONIG00000042153	ENSONIG00000036775	ATP1A1 (ENSONIG00000012456) #22	ENSONIG00000012467	ccdc28a (ENSONIG00000012468)	ENSONIG00000012469	FILIP1L (ENSONIG00000012470)	ENSONIG00000012471	ENSONIG00000012472	jagn1b (ENSONIG00000040771)	ENSONIG00000043206	ENSONIG00000032249	ENSONIG00000042299	ENSONIG00000033858	ENSONIG00000040072
Midas cichlid	MODERN SPECIES	971			ENSACIG00000003070	ENSACIG00000003065	ENSACIG00000003047	igfbp5a (ENSACIG00000002677)	igfbp2a (ENSACIG00000002653)	ENSACIG00000002626	ENSACIG00000002543	inha (ENSACIG00000002528)	spega (ENSACIG00000002119)	CTDSP1 (ENSACIG00000002070)	obsl1a (ENSACIG00000002022)	ENSACIG00000002015	ENSACIG00000001965 #22	ENSACIG00000001901 #22	ENSACIG00000001848 #22	ENSACIG00000001836	ATP1A1 (ENSACIG00000001788) #22	ENSACIG00000001741 #22	ENSACIG00000001713	ccdc28a (ENSACIG00000001700)	ENSACIG00000001652	FILIP1L (ENSACIG00000001638)	ENSACIG00000001621	COL8A1 (ENSACIG00000001609)	jagn1b (ENSACIG00000001599)	ENSACIG00000001551	ENSACIG00000001515	MTRF1 (ENSACIG00000001495)	ENSACIG00000001488
Cichlidae	ANCESTRAL SPECIES	27	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000155400.A	ENSGT00940000176837.b.b	ENSGT00940000177880	ENSGT00940000176837.b.a.b	ENSGT00940000155890.a.b	ENSGT00940000158542.a	ENSGT00940000158471	ENSGT01090000260005.a.a.a.b.a.b.b	ENSGT00390000005935	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585	ENSGT00940000154840.b.f.c.a #22	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a	ENSGT00940000153695.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00950000183028.a.a.a.g.b	ENSGT00940000161625.m	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a	ENSGT00940000156089.e.a	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b	ENSGT00390000005596.a
Haplochromini	ANCESTRAL SPECIES	38	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b
Burton s mouthbrooder	MODERN SPECIES	492									CHRNA2 (ENSHBUG00000021704)	ENSHBUG00000021591	ENSHBUG00000021574	ENSHBUG00000021567	ENSHBUG00000021559	CTDSP1 (ENSHBUG00000021545)	obsl1a (ENSHBUG00000021477)	ENSHBUG00000021421 #22	ENSHBUG00000021359	ENSHBUG00000000658 #22	ENSHBUG00000021275 #22	ENSHBUG00000021193	ENSHBUG00000021178 #22	ENSHBUG00000021146	ATP1A1 (ENSHBUG00000021121) #22	ENSHBUG00000021064	ccdc28a (ENSHBUG00000021039)	ENSHBUG00000021030	FILIP1L (ENSHBUG00000020981)	ENSHBUG00000020967	jagn1b (ENSHBUG00000020947)	ENSHBUG00000020958	ENSHBUG00000020932
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT01100000263585.k.b.a.a.b	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT01100000263513.a.b	ENSGT00940000165423.a.b	ENSGT00610000086518.b.a.a.a	ENSGT00940000156089.e.a	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000158299.b	ENSGT00940000177589	ENSGT00940000163418.A.a.b	ENSGT00940000163418.B	ENSGT00940000163418.D	ENSGT01040000240451.a.a.d	ENSGT00940000156702.a.b.b	ENSGT00940000154840.b.f.c.b.h.b #22	ENSGT01100000263585.k.a	ENSGT00940000154840.b.f.c.b.h.a #22	ENSGT01100000263585.k.b.b	ENSGT00940000154840.b.f.c.b.g.b #22	ENSGT00940000154840.b.f.c.b.g.a #22	ENSGT01100000263585.k.b.a.b	ENSGT00940000154840.b.f.c.a #22	ENSGT01100000263585.l	ENSGT00940000154790.a.a.a	ENSGT00530000064692.B.b.b.d.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00950000182852.A.a.b.c	ENSGT00940000169105	ENSGT00940000154317.b
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005017382	ENSMZEG00005017391	ENSMZEG00005017403	ENSMZEG00005017418	abi2b (ENSMZEG00005017427)	cyp20a1 (ENSMZEG00005017435)	tmem237b (ENSMZEG00005017445)	MPP4 (ENSMZEG00005017460)	ALS2 (ENSMZEG00005017474)	CHRNA2 (ENSMZEG00005017497)	ENSMZEG00005017505	ENSMZEG00005017509	ENSMZEG00005017512	CTDSP1 (ENSMZEG00005017519)	obsl1a (ENSMZEG00005017536)	ENSMZEG00005017594 #22	ENSMZEG00005017608	ENSMZEG00005017609 #22	ENSMZEG00005017620	ENSMZEG00005017626 #22	ENSMZEG00005017639 #22	ENSMZEG00005017648	ENSMZEG00005017652	ATP1A1 (ENSMZEG00005017655) #22	ENSMZEG00005017685	ENSMZEG00005017697	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017719	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017736	zgc:172122 (ENSMZEG00005017744)
Eastern happy	MODERN SPECIES	14	ENSACLG00000015074	ENSACLG00000015120	ENSACLG00000015398	ENSACLG00000015448	abi2b (ENSACLG00000015464)	cyp20a1 (ENSACLG00000015505)	tmem237b (ENSACLG00000015581)	MPP4 (ENSACLG00000015624)	ENSACLG00000015698	ALS2 (ENSACLG00000015714)	CHRNA2 (ENSACLG00000015825)	spega (ENSACLG00000015860)	CTDSP1 (ENSACLG00000015973)	obsl1a (ENSACLG00000016009)	ENSACLG00000016079	ENSACLG00000016283 #22	ENSACLG00000023442	ENSACLG00000023458 #22	ENSACLG00000023491	ENSACLG00000023504 #22	ENSACLG00000023544 #22	ENSACLG00000023606	ATP1A1 (ENSACLG00000023619) #22	ENSACLG00000023651	ENSACLG00000023697	ENSACLG00000023720	ccdc28a (ENSACLG00000023727)	ENSACLG00000023736	FILIP1L (ENSACLG00000023767)	ENSACLG00000023781	ENSACLG00000023818
P. nyererei	MODERN SPECIES	540											CHRNA2 (ENSPNYG00000022083)	spega (ENSPNYG00000022026)	CTDSP1 (ENSPNYG00000021982)	obsl1a (ENSPNYG00000021916)	ENSPNYG00000021892	ENSPNYG00000021881 #22	ENSPNYG00000021866 #22	ENSPNYG00000021858	ENSPNYG00000021840 #22	ENSPNYG00000021826	ENSPNYG00000021807 #22	ATP1A1 (ENSPNYG00000021779) #22	ENSPNYG00000021759	ENSPNYG00000021736	ccdc28a (ENSPNYG00000021713)	ENSPNYG00000021682	FILIP1L (ENSPNYG00000021666)	ENSPNYG00000021654	jagn1b (ENSPNYG00000021643)	ENSPNYG00000021622
Lyretail cichlid	MODERN SPECIES	315	ENSNBRG00000014333	ENSNBRG00000014302	ENSNBRG00000014286	abi2b (ENSNBRG00000014263)	ENSNBRG00000014254	cyp20a1 (ENSNBRG00000014215)	tmem237b (ENSNBRG00000014203)	MPP4 (ENSNBRG00000014143)	ALS2 (ENSNBRG00000014044)	CHRNA2 (ENSNBRG00000013966)	ENSNBRG00000013908	ENSNBRG00000013896	CTDSP1 (ENSNBRG00000013840)	obsl1a (ENSNBRG00000013788)	ENSNBRG00000013779	ATP1A1 (ENSNBRG00000008877) #22	ENSNBRG00000007930	ATP1A1 (ENSNBRG00000005416) #22	ENSNBRG00000005153	ENSNBRG00000005085 #22	ENSNBRG00000005065	ENSNBRG00000004998 #22	ATP1A1 (ENSNBRG00000004921) #22	ENSNBRG00000004895	ENSNBRG00000004876	ccdc28a (ENSNBRG00000004859)	ENSNBRG00000004805	FILIP1L (ENSNBRG00000004784)	ENSNBRG00000004754	COL8A1 (ENSNBRG00000004746)	jagn1b (ENSNBRG00000004740)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000027291	ENSONIG00000012315	ENSONIG00000034786	ENSONIG00000012316	ENSONIG00000034745	GALNT8 (ENSONIG00000010313)	abi2b (ENSONIG00000012331)	cyp20a1 (ENSONIG00000012336)	tmem237b (ENSONIG00000012346)	MPP4 (ENSONIG00000032396)	ALS2 (ENSONIG00000027435)	CHRNA2 (ENSONIG00000012349)	spega (ENSONIG00000012351)	CTDSP1 (ENSONIG00000012356)	obsl1a (ENSONIG00000027470)	ENSONIG00000012358 #22	ENSONIG00000035563	ENSONIG00000032416 #22	ENSONIG00000042153	ENSONIG00000036775	ATP1A1 (ENSONIG00000012456) #22	ENSONIG00000012467	ccdc28a (ENSONIG00000012468)	ENSONIG00000012469	FILIP1L (ENSONIG00000012470)	ENSONIG00000012471	ENSONIG00000012472	jagn1b (ENSONIG00000040771)	ENSONIG00000043206	ENSONIG00000032249	ENSONIG00000042299
Midas cichlid	MODERN SPECIES	971				ENSACIG00000003070	ENSACIG00000003065	ENSACIG00000003047	igfbp5a (ENSACIG00000002677)	igfbp2a (ENSACIG00000002653)	ENSACIG00000002626	ENSACIG00000002543	inha (ENSACIG00000002528)	spega (ENSACIG00000002119)	CTDSP1 (ENSACIG00000002070)	obsl1a (ENSACIG00000002022)	ENSACIG00000002015	ENSACIG00000001965 #22	ENSACIG00000001901 #22	ENSACIG00000001848 #22	ENSACIG00000001836	ATP1A1 (ENSACIG00000001788) #22	ENSACIG00000001741 #22	ENSACIG00000001713	ccdc28a (ENSACIG00000001700)	ENSACIG00000001652	FILIP1L (ENSACIG00000001638)	ENSACIG00000001621	COL8A1 (ENSACIG00000001609)	jagn1b (ENSACIG00000001599)	ENSACIG00000001551	ENSACIG00000001515	MTRF1 (ENSACIG00000001495)
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	5	eed (ENSCSEG00000000854)	pwp2h (ENSCSEG00000000861)	ENSCSEG00000000887	ENSCSEG00000000903	ENSCSEG00000000939	ENSCSEG00000000946	FILIP1L (ENSCSEG00000000958)	COL8A1 (ENSCSEG00000000963)	ENSCSEG00000000969	ihhb (ENSCSEG00000000996)	bin1b (ENSCSEG00000001008)	si:ch211-114n24.6 (ENSCSEG00000001027)	rpgrb (ENSCSEG00000001033)	ENSCSEG00000001057 #22	ENSCSEG00000001070	ATP1A1 (ENSCSEG00000001076) #22	ENSCSEG00000001086	ENSCSEG00000001088	ENSCSEG00000001091	FAM171B (ENSCSEG00000001098)	JAGN1 (ENSCSEG00000001103)	ENSCSEG00000001111	zgc:172122 (ENSCSEG00000001113)	u2af1 (ENSCSEG00000001122)	cbsa (ENSCSEG00000001129)	ENSCSEG00000001137	ENSCSEG00000001143	ENSCSEG00000001148	cryaa (ENSCSEG00000001151)	DGKZ (ENSCSEG00000001180)	LRRTM4 (ENSCSEG00000001196)
Tongue sole	MODERN SPECIES	5	ENSCSEG00000000833	ATP7B (ENSCSEG00000000836)	eed (ENSCSEG00000000854)	pwp2h (ENSCSEG00000000861)	ENSCSEG00000000887	ENSCSEG00000000903	ENSCSEG00000000939	ENSCSEG00000000946	FILIP1L (ENSCSEG00000000958)	COL8A1 (ENSCSEG00000000963)	ENSCSEG00000000969	ihhb (ENSCSEG00000000996)	bin1b (ENSCSEG00000001008)	si:ch211-114n24.6 (ENSCSEG00000001027)	rpgrb (ENSCSEG00000001033)	ENSCSEG00000001057 #22	ENSCSEG00000001070	ATP1A1 (ENSCSEG00000001076) #22	ENSCSEG00000001086	ENSCSEG00000001088	ENSCSEG00000001091	FAM171B (ENSCSEG00000001098)	JAGN1 (ENSCSEG00000001103)	ENSCSEG00000001111	zgc:172122 (ENSCSEG00000001113)	u2af1 (ENSCSEG00000001122)	cbsa (ENSCSEG00000001129)	ENSCSEG00000001137	ENSCSEG00000001143	ENSCSEG00000001148	cryaa (ENSCSEG00000001151)
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000154840.b.f.d #22
Sailfin molly	MODERN SPECIES	1368																ENSPLAG00000016465 #22	sdhc (ENSPLAG00000000830)	cadm3 (ENSPLAG00000016535)	kirrel1b (ENSPLAG00000016577)
Elephant shark	MODERN SPECIES	1505	TCEANC (ENSCMIG00000009930)	egfl6 (ENSCMIG00000009926)	ENSCMIG00000009923	TLR7 (ENSCMIG00000009917)	ENSCMIG00000009901	FRMPD4 (ENSCMIG00000009879)	MSL3 (ENSCMIG00000009842)	ENSCMIG00000009639	grk1a (ENSCMIG00000009454)	TMCO3 (ENSCMIG00000009398)	ENSCMIG00000009381	ENSCMIG00000009378	ENSCMIG00000009376	ENSCMIG00000009374	ENSCMIG00000009372	atp1a1a.2 (ENSCMIG00000007050) #22	mab21l3 (ENSCMIG00000006180) #20	SLC22A15 (ENSCMIG00000006160) #19	nhlh2 (ENSCMIG00000006141)	vangl1 (ENSCMIG00000006139)	casq2 (ENSCMIG00000006130) #16	ENSCMIG00000006115	blzf1 (ENSCMIG00000006114)	nme7 (ENSCMIG00000006099)	atp1b1b (ENSCMIG00000006084)	dpt (ENSCMIG00000006082)	ENSCMIG00000006080	ENSCMIG00000006076	ENSCMIG00000006074	yap1 (ENSCMIG00000006071)	cfap300 (ENSCMIG00000006065)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154840.b #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	3647																ENSPMAG00000001949 #22
Lamprey	MODERN SPECIES	1799															ENSPMAG00000002622	ENSPMAG00000002641 #22
Hagfish	MODERN SPECIES	1194													ENSEBUG00000003903	ENSEBUG00000001172	ENSEBUG00000016451 ##22	ENSEBUG00000003450 #22	rabac1 (ENSEBUG00000002943)	ENSEBUG00000003372	ENSEBUG00000001050	ENSEBUG00000009094	ENSEBUG00000011659	ENSEBUG00000002077	slc37a4a (ENSEBUG00000000540)	trappc4 (ENSEBUG00000006970)	ENSEBUG00000007928	ENSEBUG00000001926	ENSEBUG00000012497	ENSEBUG00000008156	ENSEBUG00000012039	adamts15a (ENSEBUG00000002103)	ENSEBUG00000010695
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Lamprey	MODERN SPECIES	2845																atp1a1a.4 (ENSPMAG00000008154) ##22
Hagfish	MODERN SPECIES	1194														ENSEBUG00000003903	ENSEBUG00000001172	ENSEBUG00000016451 ##22	ENSEBUG00000003450 #22	rabac1 (ENSEBUG00000002943)	ENSEBUG00000003372	ENSEBUG00000001050	ENSEBUG00000009094	ENSEBUG00000011659	ENSEBUG00000002077	slc37a4a (ENSEBUG00000000540)	trappc4 (ENSEBUG00000006970)	ENSEBUG00000007928	ENSEBUG00000001926	ENSEBUG00000012497	ENSEBUG00000008156	ENSEBUG00000012039	adamts15a (ENSEBUG00000002103)
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.a ##22
Cod	MODERN SPECIES	21	ENSGMOG00000014218	ENSGMOG00000016516	ENSGMOG00000024488	ENSGMOG00000014109	ENSGMOG00000035897	ENSGMOG00000023916	ENSGMOG00000003546	ENSGMOG00000026904	ENSGMOG00000003659	ENSGMOG00000027495	dnaaf6 (ENSGMOG00000003680)	ENSGMOG00000025549	ENSGMOG00000036143	lig1 (ENSGMOG00000003715)	mpz (ENSGMOG00000003779)	ENSGMOG00000006554 ##22	sdhc (ENSGMOG00000006584)	kirrel1b (ENSGMOG00000011304)	ENSGMOG00000032116	ENSGMOG00000026090	ENSGMOG00000029385	ENSGMOG00000020059	ENSGMOG00000017524	ENSGMOG00000031444	ENSGMOG00000027356	adcy8 (ENSGMOG00000025436)	efr3a (ENSGMOG00000019507)	ENSGMOG00000035129	HHLA1 (ENSGMOG00000026950)	KCNQ3 (ENSGMOG00000019370)	dnaaf11 (ENSGMOG00000017528)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154840.a.b ##22
Cod	MODERN SPECIES	20	ENSGMOG00000023000	ENSGMOG00000013197	ENSGMOG00000036807	ENSGMOG00000032400	ENSGMOG00000023186	ENSGMOG00000019125	ENSGMOG00000026707	ENSGMOG00000014088	ENSGMOG00000023264	ENSGMOG00000005104	ENSGMOG00000022842	ENSGMOG00000027854	ENSGMOG00000032832	ENSGMOG00000034046	ENSGMOG00000007889	ENSGMOG00000005261 ##22	ENSGMOG00000027911	ENSGMOG00000027579	ENSGMOG00000033630	ENSGMOG00000034082	ENSGMOG00000027197	ENSGMOG00000027805	ENSGMOG00000028453	ENSGMOG00000029019	ENSGMOG00000023909	ENSGMOG00000033347	ENSGMOG00000025286	ENSGMOG00000022324	ENSGMOG00000030081	ENSGMOG00000024483	ENSGMOG00000022981
Ciona	ANCESTRAL SPECIES																	ENSGT00940000154840 #22
Ciona savignyi	MODERN SPECIES	1	ENSCSAVG00000006060	ENSCSAVG00000006065	ENSCSAVG00000006068	ENSCSAVG00000006075	ENSCSAVG00000006081	ENSCSAVG00000006085	ENSCSAVG00000006881	ENSCSAVG00000006884	ENSCSAVG00000006887	ENSCSAVG00000006890	ENSCSAVG00000006894	ENSCSAVG00000006902	ENSCSAVG00000006923	ENSCSAVG00000006929	ENSCSAVG00000006931	ENSCSAVG00000006933 #22	ENSCSAVG00000007500	ENSCSAVG00000007504	ENSCSAVG00000007507	ENSCSAVG00000007509	ENSCSAVG00000007513	ENSCSAVG00000007519	ENSCSAVG00000007524	ENSCSAVG00000007527	ENSCSAVG00000007549	ENSCSAVG00000007552	ENSCSAVG00000007559	ENSCSAVG00000007717	ENSCSAVG00000007739	ENSCSAVG00000007740	ENSCSAVG00000007746
Ciona intestinalis	MODERN SPECIES	78										ENSCING00000019235	ENSCING00000023713	ENSCING00000020914	ENSCING00000006022	ENSCING00000019881	ENSCING00000023138	ENSCING00000018891 #22	ENSCING00000023652	ENSCING00000016021	ENSCING00000021404	ENSCING00000005990	ENSCING00000021598	ENSCING00000017307	ENSCING00000021077	ENSCING00000024840	ENSCING00000018457
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000154840 #22
Fruitfly	MODERN SPECIES	20																JYalpha (FBgn0267363) #22	PlexB (FBgn0025740)	ci (FBgn0004859)	RpS3A (FBgn0017545)	pan (FBgn0085432)	Ank (FBgn0011747)	anne (FBgn0052000)	CG32006 (FBgn0052006)	CG31997 (FBgn0051997)	CG33978 (FBgn0053978)	Arl4 (FBgn0039889)	Abcd1 (FBgn0039890)	CG31998 (FBgn0051998)	Crk (FBgn0024811)	CG31999 (FBgn0051999)	yellow-h (FBgn0039896)