Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000162718	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000162718	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000164746	ENSGT00940000167338 #28	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000167338 #28	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A.i	ENSGT00390000018717.b.a.b
Degu	MODERN SPECIES	181	ENSODEG00000007383 #7	SIKE1 (ENSODEG00000007343) #8	ENSODEG00000010107 #9	SYCP1 (ENSODEG00000006927) #10	TSHB (ENSODEG00000009005) #11	TSPAN2 (ENSODEG00000007319) #12	NGF (ENSODEG00000006538) #13	ENSODEG00000006379 #14	ENSODEG00000008957 #15	ENSODEG00000008559 #16	VANGL1 (ENSODEG00000010599) #17	CASQ2 (ENSODEG00000009014) #18	NHLH2 (ENSODEG00000008157) #19	SLC22A15 (ENSODEG00000007565) #20	MAB21L3 (ENSODEG00000005924) #21	ATP1A1 (ENSODEG00000006810) #22	ENSODEG00000006132 #23	IGSF3 (ENSODEG00000007439) #24	ENSODEG00000006855 #25	PTGFRN (ENSODEG00000006807) #26	CD101 (ENSODEG00000006286) #27	ENSODEG00000006362 #28	TRIM45 (ENSODEG00000007020) #29	VTCN1 (ENSODEG00000006757) #30	MAN1A2 (ENSODEG00000005674) #31	TENT5C (ENSODEG00000006187) #32	ENSODEG00000005813 #33
Long-tailed chinchilla	MODERN SPECIES	142	AMPD1 (ENSCLAG00000006645)	NRAS (ENSCLAG00000005888)	CSDE1 (ENSCLAG00000006618) #7	SIKE1 (ENSCLAG00000005344) #8	ENSCLAG00000006997	ENSCLAG00000013132 #9	ENSCLAG00000004900 ##10	TSHB (ENSCLAG00000011105) #11	TSPAN2 (ENSCLAG00000007865) #12	NGF (ENSCLAG00000004815) #13	VANGL1 (ENSCLAG00000006270) #17	CASQ2 (ENSCLAG00000007972) #18	NHLH2 (ENSCLAG00000005691) #19	SLC22A15 (ENSCLAG00000006619) #20	MAB21L3 (ENSCLAG00000004428) #21	ATP1A1 (ENSCLAG00000005733) #22	IGSF3 (ENSCLAG00000006923) #24	CD2 (ENSCLAG00000007838)	PTGFRN (ENSCLAG00000008229) #26	CD101 (ENSCLAG00000010019) #27	ENSCLAG00000014230 #28	TRIM45 (ENSCLAG00000010898) #29	VTCN1 (ENSCLAG00000014982) #30	MAN1A2 (ENSCLAG00000008573) #31	TENT5C (ENSCLAG00000006985) #32	ENSCLAG00000007247	GDAP2 (ENSCLAG00000008843)	WDR3 (ENSCLAG00000010657)	SPAG17 (ENSCLAG00000006388)	TBX15 (ENSCLAG00000008292)	WARS2 (ENSCLAG00000004926)
Guinea pig	MODERN SPECIES	2	DENND2C (ENSCPOG00000012944)	AMPD1 (ENSCPOG00000002591)	NRAS (ENSCPOG00000021833)	CSDE1 (ENSCPOG00000040388) #7	SIKE1 (ENSCPOG00000007406) #8	ENSCPOG00000009115	SYCP1 (ENSCPOG00000012690) #10	TSHB (ENSCPOG00000030694) #11	TSPAN2 (ENSCPOG00000008376) #12	NGF (ENSCPOG00000024033) #13	VANGL1 (ENSCPOG00000001701) #17	CASQ2 (ENSCPOG00000001703) #18	NHLH2 (ENSCPOG00000026593) #19	SLC22A15 (ENSCPOG00000009506) #20	MAB21L3 (ENSCPOG00000009511) #21	ATP1A1 (ENSCPOG00000000927) #22	IGSF3 (ENSCPOG00000002029) #24	CD2 (ENSCPOG00000036418)	PTGFRN (ENSCPOG00000015740) #26	CD101 (ENSCPOG00000015741) #27	ENSCPOG00000000605	VTCN1 (ENSCPOG00000034001) #30	MAN1A2 (ENSCPOG00000004935) #31	TENT5C (ENSCPOG00000035573) #32	GDAP2 (ENSCPOG00000012599)	WDR3 (ENSCPOG00000011305)	SPAG17 (ENSCPOG00000011317)	TBX15 (ENSCPOG00000000615)	WARS2 (ENSCPOG00000000616)	ENSCPOG00000001451	ENSCPOG00000033437
Naked mole-rat female	MODERN SPECIES	10	CSDE1 (ENSHGLG00000009620) #7	SIKE1 (ENSHGLG00000015408) #8	ENSHGLG00000032648	ENSHGLG00000004974 #9	ENSHGLG00000047308	ENSHGLG00000006103 #10	TSHB (ENSHGLG00000014600) #11	TSPAN2 (ENSHGLG00000010786) #12	NGF (ENSHGLG00000044577) #13	ENSHGLG00000032979	VANGL1 (ENSHGLG00000016399) #17	CASQ2 (ENSHGLG00000038257) #18	NHLH2 (ENSHGLG00000046588) #19	SLC22A15 (ENSHGLG00000011061) #20	MAB21L3 (ENSHGLG00000009205) #21	ATP1A1 (ENSHGLG00000009304) #22	IGSF3 (ENSHGLG00000018539) #24	CD2 (ENSHGLG00000014947)	PTGFRN (ENSHGLG00000019106) #26	CD101 (ENSHGLG00000018298) #27	TTF2 (ENSHGLG00000012459)	TRIM45 (ENSHGLG00000017735) #29	VTCN1 (ENSHGLG00000018792) #30	ENSHGLG00000045985	MAN1A2 (ENSHGLG00000017646) #31	FAM46C (ENSHGLG00000043157) #32	ENSHGLG00000041120	ENSHGLG00000017537	WDR3 (ENSHGLG00000017936)	SPAG17 (ENSHGLG00000009162)	ENSHGLG00000032534
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000162718	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini	ANCESTRAL SPECIES	62	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000162718	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Marmotini_b	ANCESTRAL SPECIES	74	ENSGT00950000182931.B.a.b	ENSGT00950000183011.c.a.a	ENSGT00940000158947	ENSGT00390000016950 #7	ENSGT00390000018003.a #8	ENSGT00940000163318 #9	ENSGT00390000003368.d #10	ENSGT00940000158152 #11	ENSGT00940000157504 #12	ENSGT00390000007725.A.b #13	ENSGT00390000012496.a #17	ENSGT00390000019377.b #18	ENSGT00940000162602 #19	ENSGT00940000160364 #20	ENSGT01050000244827.B #21	ENSGT00940000154840.b #22	ENSGT00940000155177.b #24	ENSGT01030000234540.E	ENSGT00940000158367 #26	ENSGT00940000161722 #27	ENSGT00940000162718	ENSGT00940000154334.k #29	ENSGT00940000157300 #30	ENSGT00940000157498 #31	ENSGT00940000158856 #32	ENSGT00940000156336	ENSGT00940000153859.a	ENSGT00390000013693	ENSGT00940000159013	ENSGT00940000153724.A	ENSGT00390000018717.b.a.b
Squirrel	MODERN SPECIES	227		AMPD1 (ENSSTOG00000015082)	NRAS (ENSSTOG00000023151)	ENSSTOG00000032722 #7	SIKE1 (ENSSTOG00000001684) #8	ENSSTOG00000027072 #9	ENSSTOG00000010304 #10	TSHB (ENSSTOG00000022113) #11	TSPAN2 (ENSSTOG00000020353) #12	NGF (ENSSTOG00000005518) #13	VANGL1 (ENSSTOG00000015734) #17	CASQ2 (ENSSTOG00000015738) #18	NHLH2 (ENSSTOG00000019698) #19	SLC22A15 (ENSSTOG00000016141) #20	MAB21L3 (ENSSTOG00000026516) #21	ATP1A1 (ENSSTOG00000016127) #22	IGSF3 (ENSSTOG00000022906) #24	CD2 (ENSSTOG00000004188)	PTGFRN (ENSSTOG00000010916) #26	CD101 (ENSSTOG00000010919) #27	TTF2 (ENSSTOG00000010927)	ENSSTOG00000034928	TRIM45 (ENSSTOG00000007369) #29	VTCN1 (ENSSTOG00000007389) #30	MAN1A2 (ENSSTOG00000016016) #31	TENT5C (ENSSTOG00000010392) #32	GDAP2 (ENSSTOG00000024699)	WDR3 (ENSSTOG00000003504)	SPAG17 (ENSSTOG00000003532)	TBX15 (ENSSTOG00000013040)	WARS2 (ENSSTOG00000013051)
Arctic ground squirrel	MODERN SPECIES	134	DENND2C (ENSUPAG00010022334)	AMPD1 (ENSUPAG00010022337)	NRAS (ENSUPAG00010022339)	CSDE1 (ENSUPAG00010022340) #7	SIKE1 (ENSUPAG00010022488) #8	ENSUPAG00010022495 #9	SYCP1 (ENSUPAG00010022501) #10	TSHB (ENSUPAG00010022509) #11	TSPAN2 (ENSUPAG00010022515) #12	NGF (ENSUPAG00010022522) #13	VANGL1 (ENSUPAG00010022525) #17	CASQ2 (ENSUPAG00010022531) #18	NHLH2 (ENSUPAG00010022533) #19	SLC22A15 (ENSUPAG00010022536) #20	MAB21L3 (ENSUPAG00010022542) #21	ATP1A1 (ENSUPAG00010022544) #22
Alpin marmot	MODERN SPECIES	79	NRAS (ENSMMMG00000014434)	CSDE1 (ENSMMMG00000014448) #7	SIKE1 (ENSMMMG00000014866) #8	ENSMMMG00000014870	ENSMMMG00000014879 #9	SYCP1 (ENSMMMG00000014892) #10	ENSMMMG00000014952	TSHB (ENSMMMG00000014957) #11	TSPAN2 (ENSMMMG00000014968) #12	NGF (ENSMMMG00000014973) #13	VANGL1 (ENSMMMG00000014977) #17	CASQ2 (ENSMMMG00000014991) #18	NHLH2 (ENSMMMG00000015011) #19	SLC22A15 (ENSMMMG00000015020) #20	MAB21L3 (ENSMMMG00000015051) #21	ATP1A1 (ENSMMMG00000015066) #22	IGSF3 (ENSMMMG00000015107) #24	CD2 (ENSMMMG00000015127)	PTGFRN (ENSMMMG00000015141) #26	CD101 (ENSMMMG00000015154) #27	TTF2 (ENSMMMG00000015196)	ENSMMMG00000015205	TRIM45 (ENSMMMG00000015213) #29	VTCN1 (ENSMMMG00000015255) #30	MAN1A2 (ENSMMMG00000015283) #31	TENT5C (ENSMMMG00000015304) #32	GDAP2 (ENSMMMG00000015308)	WDR3 (ENSMMMG00000015336)	ENSMMMG00000015354	TBX15 (ENSMMMG00000015373)	WARS2 (ENSMMMG00000015379)
Eurasian red squirrel	MODERN SPECIES		AMPD1 (ENSSVLG00005000465)	ENSSVLG00005000492	CSDE1 (ENSSVLG00005000559) #7	SIKE1 (ENSSVLG00005000707) #8	ENSSVLG00005000743 #9	SYCP1 (ENSSVLG00005000819) #10	TSHB (ENSSVLG00005000935) #11	TSPAN2 (ENSSVLG00005000967) #12	NGF (ENSSVLG00005001008) #13	ENSSVLG00005001021	VANGL1 (ENSSVLG00005001032) #17	CASQ2 (ENSSVLG00005001056) #18	NHLH2 (ENSSVLG00005001085) #19	SLC22A15 (ENSSVLG00005001098) #20	MAB21L3 (ENSSVLG00005001135) #21	ATP1A1 (ENSSVLG00005001182) #22	ENSSVLG00005001215	IGSF3 (ENSSVLG00005001236) #24	CD2 (ENSSVLG00005001265)	PTGFRN (ENSSVLG00005001283) #26	CD101 (ENSSVLG00005001302) #27	ENSSVLG00005001327	ENSSVLG00005001350	TRIM45 (ENSSVLG00005001388) #29	VTCN1 (ENSSVLG00005001433) #30	MAN1A2 (ENSSVLG00005001469) #31	TENT5C (ENSSVLG00005001495) #32	GDAP2 (ENSSVLG00005001518)	ENSSVLG00005001561	WDR3 (ENSSVLG00005001572)	ENSSVLG00005001591