Vertebrata	ANCESTRAL SPECIES	520																ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24
Gnathostomata	ANCESTRAL SPECIES	13	ENSGT00390000013448.a.b	ENSGT00940000157826	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.a ##24	ENSGT01100000265079	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01060000248685	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Euteleostomi	ANCESTRAL SPECIES	15	ENSGT00940000157826	ENSGT00940000153887.A	ENSGT00390000001205.b	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000265079	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01060000248685	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000168574	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Tetrapoda	ANCESTRAL SPECIES	23	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Amniota	ANCESTRAL SPECIES	8	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Mammalia	ANCESTRAL SPECIES	16	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32
Theria	ANCESTRAL SPECIES	14	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32
Eutheria	ANCESTRAL SPECIES	12	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT00940000164834	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Glires	ANCESTRAL SPECIES	12	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Lagomorpha	ANCESTRAL SPECIES	132	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000156103	ENSGT01020000230401.a.a.b.b.t #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32
Rabbit	MODERN SPECIES	484	HSP90AA1 (ENSOCUG00000001280) #7	ENSOCUG00000012617 #8	WDR20 (ENSOCUG00000001281) #9	MOK (ENSOCUG00000013870) #10	ZNF839 (ENSOCUG00000014486) #11	CINP (ENSOCUG00000026866) #12	RCOR1 (ENSOCUG00000003324) #13	TECPR2 (ENSOCUG00000015804) #14	TRAF3 (ENSOCUG00000003672) #15	CDC42BPB (ENSOCUG00000010323) #16	ENSOCUG00000038309 #17	EXOC3L4 (ENSOCUG00000023363) #18	TNFAIP2 (ENSOCUG00000011484) #19	EIF5 (ENSOCUG00000027975) #20	ENSOCUG00000036466 #21	MARK3 (ENSOCUG00000016664) #22	TRMT61A (ENSOCUG00000022502) #23	ENSOCUG00000008818 #24	KLC1 (ENSOCUG00000012446) #25	XRCC3 (ENSOCUG00000024574) #26	ENSOCUG00000023816 #27	PPP1R13B (ENSOCUG00000010462) #28	ENSOCUG00000017262 #29	RD3L (ENSOCUG00000039245) #30	TDRD9 (ENSOCUG00000014788) #31	ASPG (ENSOCUG00000023219) #32
Pika	MODERN SPECIES	3029																MARK3 (ENSOPRG00000017174) #22	ENSOPRG00000017186 #20
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000154862.a #22
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000154862.a #22
Alpin marmot	MODERN SPECIES	9	TEC (ENSMMMG00000019700)	SLAIN2 (ENSMMMG00000019758)	ENSMMMG00000019763	ENSMMMG00000019771	FRYL (ENSMMMG00000019781)	OCIAD1 (ENSMMMG00000019868)	OCIAD2 (ENSMMMG00000019984)	CWH43 (ENSMMMG00000019997)	DCUN1D4 (ENSMMMG00000020029)	LRRC66 (ENSMMMG00000020043)	SGCB (ENSMMMG00000020055)	ENSMMMG00000020059	ENSMMMG00000020060	USP46 (ENSMMMG00000020069)	ENSMMMG00000020086	ENSMMMG00000020094 #22	RASL11B (ENSMMMG00000020096)	SCFD2 (ENSMMMG00000020102)	ENSMMMG00000020140	LNX1 (ENSMMMG00000020305)	CHIC2 (ENSMMMG00000020457)	GSX2 (ENSMMMG00000020460)	PDGFRA (ENSMMMG00000020466)	KIT (ENSMMMG00000020518)	KDR (ENSMMMG00000020555)	SRD5A3 (ENSMMMG00000020584)	TMEM165 (ENSMMMG00000020591)	CLOCK (ENSMMMG00000020601)	PDCL2 (ENSMMMG00000020666)	NMU (ENSMMMG00000020691)	EXOC1L (ENSMMMG00000020698)
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862.b #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Marmotini	ANCESTRAL SPECIES	27	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862.b #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Marmotini_b	ANCESTRAL SPECIES	99	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862.b #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Arctic ground squirrel	MODERN SPECIES	320							RCOR1 (ENSUPAG00010017704) #13	TRAF3 (ENSUPAG00010017758) #15	AMN (ENSUPAG00010017783)	CDC42BPB (ENSUPAG00010017808) #16	ENSUPAG00010017871	EXOC3L4 (ENSUPAG00010017874) #18	TNFAIP2 (ENSUPAG00010017901) #19	ENSUPAG00010017927	ENSUPAG00010017935 ##20	MARK3 (ENSUPAG00010017955) #22	CKB (ENSUPAG00010018151) #24	TRMT61A (ENSUPAG00010018157) #23	BAG5 (ENSUPAG00010018162)	KLC1 (ENSUPAG00010018171) #25	XRCC3 (ENSUPAG00010018352) #26	ZFYVE21 (ENSUPAG00010018360) #27	PPP1R13B (ENSUPAG00010018373) #28	ENSUPAG00010018391 #29	TDRD9 (ENSUPAG00010018401) #31	RD3L (ENSUPAG00010018456) #30	ASPG (ENSUPAG00010018503) #32	KIF26A (ENSUPAG00010018523)	ENSUPAG00010018557	TMEM179 (ENSUPAG00010018572)	ENSUPAG00010018579
Squirrel	MODERN SPECIES	221	FAM237B (ENSSTOG00000021975)	GTPBP10 (ENSSTOG00000008220)	CLDN12 (ENSSTOG00000013464)	PTTG1IP2 (ENSSTOG00000030927)	CDK14 (ENSSTOG00000013466)	FZD1 (ENSSTOG00000013482)	MTERF1 (ENSSTOG00000001846)	AKAP9 (ENSSTOG00000006585)	CYP51A1 (ENSSTOG00000006693)	KRIT1 (ENSSTOG00000022767)	ENSSTOG00000026145	EXOC3L4 (ENSSTOG00000004186) #18	ENSSTOG00000028490	ENSSTOG00000022018	EIF5 (ENSSTOG00000003683) #20	MARK3 (ENSSTOG00000009776) #22	CKB (ENSSTOG00000023632) #24	TRMT61A (ENSSTOG00000009792) #23	BAG5 (ENSSTOG00000027571)	COA8 (ENSSTOG00000019873)	KLC1 (ENSSTOG00000014074) #25	XRCC3 (ENSSTOG00000027100) #26	ZFYVE21 (ENSSTOG00000010336) #27	PPP1R13B (ENSSTOG00000010345) #28	ATP5MJ (ENSSTOG00000007883) #29	RD3L (ENSSTOG00000026241) #30	ENSSTOG00000002831	TDRD9 (ENSSTOG00000007890) #31	ASPG (ENSSTOG00000023161) #32	KIF26A (ENSSTOG00000021225)	TMEM179 (ENSSTOG00000022354)
Alpin marmot	MODERN SPECIES	1	WDR20 (ENSMMMG00000003641) #9	MOK (ENSMMMG00000003666) #10	ENSMMMG00000003710 #11	CINP (ENSMMMG00000003712) #12	TECPR2 (ENSMMMG00000003754) #14	ANKRD9 (ENSMMMG00000003841)	RCOR1 (ENSMMMG00000003851) #13	TRAF3 (ENSMMMG00000003876) #15	CDC42BPB (ENSMMMG00000003965) #16	ENSMMMG00000004030	LBHD2 (ENSMMMG00000004048) #17	EXOC3L4 (ENSMMMG00000004056) #18	TNFAIP2 (ENSMMMG00000004097) #19	ENSMMMG00000004126	EIF5 (ENSMMMG00000004136) #20	MARK3 (ENSMMMG00000004239) #22	CKB (ENSMMMG00000004465) #24	TRMT61A (ENSMMMG00000004492) #23	BAG5 (ENSMMMG00000004510)	COA8 (ENSMMMG00000004518)	KLC1 (ENSMMMG00000004526) #25	XRCC3 (ENSMMMG00000004791) #26	ZFYVE21 (ENSMMMG00000004805) #27	PPP1R13B (ENSMMMG00000004811) #28	ENSMMMG00000004833 #29	RD3L (ENSMMMG00000004838) #30	TDRD9 (ENSMMMG00000004862) #31	ASPG (ENSMMMG00000004917) #32	KIF26A (ENSMMMG00000004945)	ENSMMMG00000004995	ENSMMMG00000005003
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	WDR20 (ENSSVLG00005014924) #9	MOK (ENSSVLG00005014536) #10	ZNF839 (ENSSVLG00005014407) #11	CINP (ENSSVLG00005014319) #12	TECPR2 (ENSSVLG00005014246) #14	ANKRD9 (ENSSVLG00005014170)	RCOR1 (ENSSVLG00005014032) #13	TRAF3 (ENSSVLG00005013900) #15	AMN (ENSSVLG00005013683)	CDC42BPB (ENSSVLG00005013599) #16	LBHD2 (ENSSVLG00005013492) #17	EXOC3L4 (ENSSVLG00005013432) #18	TNFAIP2 (ENSSVLG00005013312) #19	ENSSVLG00005013280	EIF5 (ENSSVLG00005013171) #20	ENSSVLG00005012973 #22	ENSSVLG00005012740 #24	TRMT61A (ENSSVLG00005012687) #23	BAG5 (ENSSVLG00005012632)	COA8 (ENSSVLG00005012532)	ENSSVLG00005012491 #26	KLC1 (ENSSVLG00005012331) #25	ENSSVLG00005012176 #26	ZFYVE21 (ENSSVLG00005012130) #27	PPP1R13B (ENSSVLG00005011931) #28	ENSSVLG00005011879 #29	RD3L (ENSSVLG00005011833) #30	TDRD9 (ENSSVLG00005011123) #31	ASPG (ENSSVLG00005010927) #32	KIF26A (ENSSVLG00005010683)	ENSSVLG00005010660
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	34														ENSSVLG00005015621	ENSSVLG00005015589	ENSSVLG00005015558 #22	ENSSVLG00005015468	ENSSVLG00005015319	ENSSVLG00005015261	ENSSVLG00005015201	ENSSVLG00005015007
Eurasian red squirrel	MODERN SPECIES	7	MUSTN1 (ENSSVLG00005017922)	STIMATE (ENSSVLG00005017898)	SFMBT1 (ENSSVLG00005017860)	RFT1 (ENSSVLG00005017758)	PRKCD (ENSSVLG00005017697)	ENSSVLG00005017525	DCP1A (ENSSVLG00005017426)	CACNA1D (ENSSVLG00005016049)	CHDH (ENSSVLG00005015726)	IL17RB (ENSSVLG00005015604)	ACTR8 (ENSSVLG00005015551)	SELENOK (ENSSVLG00005015515)	LRTM1 (ENSSVLG00005015464)	CACNA2D3 (ENSSVLG00005014215)	WNT5A (ENSSVLG00005013995)	ENSSVLG00005013929 #22	ERC2 (ENSSVLG00005013830)	CCDC66 (ENSSVLG00005013709)	TASOR (ENSSVLG00005013506)	ARHGEF3 (ENSSVLG00005013358)	IL17RD (ENSSVLG00005012938)	HESX1 (ENSSVLG00005012859)	APPL1 (ENSSVLG00005012779)	ASB14 (ENSSVLG00005012557)	ENSSVLG00005012486	DNAH12 (ENSSVLG00005011312)	PDE12 (ENSSVLG00005011192)	ENSSVLG00005011013	DENND6A (ENSSVLG00005010816)	ENSSVLG00005010744	SLMAP (ENSSVLG00005010258)
Hystricomorpha	ANCESTRAL SPECIES	51	ENSGT01020000230401.a.a.b.b.t #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Hystricomorpha_a	ANCESTRAL SPECIES	58	ENSGT01020000230401.a.a.b.b.t #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a.p.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Guinea pig	MODERN SPECIES	111	HSP90AA1 (ENSCPOG00000002015) #7	WDR20 (ENSCPOG00000002483) #9	ENSCPOG00000035139 #9	ENSCPOG00000021691 #10	CINP (ENSCPOG00000034861) #12	TECPR2 (ENSCPOG00000000207) #14	ANKRD9 (ENSCPOG00000010220)	RCOR1 (ENSCPOG00000011410) #13	TRAF3 (ENSCPOG00000040090) #15	AMN (ENSCPOG00000022870)	CDC42BPB (ENSCPOG00000003812) #16	LBHD2 (ENSCPOG00000030081) #17	EXOC3L4 (ENSCPOG00000010016) #18	TNFAIP2 (ENSCPOG00000010932) #19	EIF5 (ENSCPOG00000001236) #20	MARK3 (ENSCPOG00000013946) #22	CKB (ENSCPOG00000032248) #24	TRMT61A (ENSCPOG00000033200) #23	BAG5 (ENSCPOG00000024833)	COA8 (ENSCPOG00000013098)	KLC1 (ENSCPOG00000026901) #25	XRCC3 (ENSCPOG00000022422) #26	ZFYVE21 (ENSCPOG00000024426) #27	PPP1R13B (ENSCPOG00000021000) #28	ENSCPOG00000033733 #29	TDRD9 (ENSCPOG00000002760) #31	RD3L (ENSCPOG00000036429) #30	ASPG (ENSCPOG00000026114) #32	KIF26A (ENSCPOG00000019833)	ENSCPOG00000039530	INF2 (ENSCPOG00000015219)
Hystricomorpha_b	ANCESTRAL SPECIES	92	ENSGT01020000230401.a.a.b.b.t #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a.p.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d
Long-tailed chinchilla	MODERN SPECIES	245	PPP2R5C (ENSCLAG00000005119)	DYNC1H1 (ENSCLAG00000007399)	HSP90AA1 (ENSCLAG00000004637) #7	WDR20 (ENSCLAG00000004822) #9	ENSCLAG00000005095 #10	ENSCLAG00000013281 #11	CINP (ENSCLAG00000013656) #12	TECPR2 (ENSCLAG00000009018) #14	RCOR1 (ENSCLAG00000007483) #13	TRAF3 (ENSCLAG00000007812) #15	CDC42BPB (ENSCLAG00000004604) #16	LBHD2 (ENSCLAG00000005702) #17	EXOC3L4 (ENSCLAG00000005670) #18	TNFAIP2 (ENSCLAG00000005823) #19	ENSCLAG00000006631 #20	MARK3 (ENSCLAG00000007224) #22	TRMT61A (ENSCLAG00000007887) #23	BAG5 (ENSCLAG00000007950)	COA8 (ENSCLAG00000008167)	KLC1 (ENSCLAG00000008311) #25	XRCC3 (ENSCLAG00000010003) #26	ZFYVE21 (ENSCLAG00000010702) #27	PPP1R13B (ENSCLAG00000010854) #28	ENSCLAG00000006358 #29	TDRD9 (ENSCLAG00000006616) #31	ASPG (ENSCLAG00000007283) #32	KIF26A (ENSCLAG00000007753)	ENSCLAG00000008417	TMEM179 (ENSCLAG00000008467)	INF2 (ENSCLAG00000011708)	ADSS1 (ENSCLAG00000004836)
Degu	MODERN SPECIES	267	DYNC1H1 (ENSODEG00000002749)	ENSODEG00000002636 ##7	WDR20 (ENSODEG00000002622) #9	ENSODEG00000002597 #10	CINP (ENSODEG00000002583) #12	ENSODEG00000002569 #14	ANKRD9 (ENSODEG00000002556)	RCOR1 (ENSODEG00000002491) #13	TRAF3 (ENSODEG00000002457) #15	AMN (ENSODEG00000002431)	CDC42BPB (ENSODEG00000002217) #16	EXOC3L4 (ENSODEG00000002116) #18	TNFAIP2 (ENSODEG00000002077) #19	ENSODEG00000002043 #20	ENSODEG00000018808	MARK3 (ENSODEG00000001890) #22	ENSODEG00000001805 #24	TRMT61A (ENSODEG00000001775) #23	COA8 (ENSODEG00000002642)	KLC1 (ENSODEG00000002575) #25	XRCC3 (ENSODEG00000002520) #26	ZFYVE21 (ENSODEG00000002496) #27	ENSODEG00000002481 #28	ENSODEG00000002459 #29	TDRD9 (ENSODEG00000002255) #31	ASPG (ENSODEG00000002164) #32	KIF26A (ENSODEG00000002137)	TMEM179 (ENSODEG00000002119)	INF2 (ENSODEG00000002088)	ADSS1 (ENSODEG00000002065)	ENSODEG00000002046
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	BTBD8 (ENSHGLG00000008571)	ENSHGLG00000046149	ENSHGLG00000033060	ENSHGLG00000010230	BRDT (ENSHGLG00000004317)	ENSHGLG00000046123	ENSHGLG00000004997	CDC7 (ENSHGLG00000046565)	HFM1 (ENSHGLG00000007780)	ZNF644 (ENSHGLG00000008786)	ENSHGLG00000041803	ENSHGLG00000009126	ENSHGLG00000032341	ENSHGLG00000040937	ZNF326 (ENSHGLG00000004782)	ENSHGLG00000033474 #22	ENSHGLG00000036797	ENSHGLG00000007352	ENSHGLG00000031997	ENSHGLG00000004912	ENSHGLG00000009330	ENSHGLG00000007998	ENSHGLG00000005453	ENSHGLG00000006893	GBP1 (ENSHGLG00000008509)	CCBL2 (ENSHGLG00000004456)	GTF2B (ENSHGLG00000045614)	PKN2 (ENSHGLG00000006153)	LMO4 (ENSHGLG00000038005)	HS2ST1 (ENSHGLG00000008512)	SELENOF (ENSHGLG00000044599)
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000019164	EML6 (ENSHGLG00000010907)	RTN4 (ENSHGLG00000027971)	CLHC1 (ENSHGLG00000040051)	RPS27A (ENSHGLG00000042789)	MTIF2 (ENSHGLG00000009152)	ENSHGLG00000032573	CCDC88A (ENSHGLG00000008470)	ENSHGLG00000044471	ENSHGLG00000008137	ENSHGLG00000007808	ENSHGLG00000007480	EFEMP1 (ENSHGLG00000007156)	CCDC85A (ENSHGLG00000006824)	ENSHGLG00000040361	ENSHGLG00000044514 #22	VRK2 (ENSHGLG00000006691)	FANCL (ENSHGLG00000006628)	BCL11A (ENSHGLG00000019600)	ENSHGLG00000040216	ENSHGLG00000036544	PAPOLG (ENSHGLG00000019610)	REL (ENSHGLG00000019601)	PUS10 (ENSHGLG00000019599)	PEX13 (ENSHGLG00000042744)	ENSHGLG00000046720	ENSHGLG00000047849	ENSHGLG00000046080	SANBR (ENSHGLG00000013196)	ENSHGLG00000019155	ENSHGLG00000019027
Naked mole-rat female	MODERN SPECIES	18	HSP90AA1 (ENSHGLG00000010773) ##7	ENSHGLG00000045892 #9	ENSHGLG00000009939 #9	ENSHGLG00000032701 #11	CINP (ENSHGLG00000045981) #12	ENSHGLG00000008270 #14	RCOR1 (ENSHGLG00000005778) #13	TRAF3 (ENSHGLG00000049736) #15	ENSHGLG00000036396	AMN (ENSHGLG00000015524)	CDC42BPB (ENSHGLG00000018068) #16	LBHD2 (ENSHGLG00000045160) #17	EXOC3L4 (ENSHGLG00000013564) #18	TNFAIP2 (ENSHGLG00000015741) #19	EIF5 (ENSHGLG00000015043) #20	MARK3 (ENSHGLG00000007571) #22	CKB (ENSHGLG00000005770) #24	TRMT61A (ENSHGLG00000005604) #23	ENSHGLG00000050617	ENSHGLG00000011330	KLC1 (ENSHGLG00000006287) #25	XRCC3 (ENSHGLG00000011996) #26	ZFYVE21 (ENSHGLG00000011494) #27	PPP1R13B (ENSHGLG00000006763) #28	ENSHGLG00000036711 #29	TDRD9 (ENSHGLG00000007727) #31	RD3L (ENSHGLG00000047639) #30	ASPG (ENSHGLG00000005952) #32	KIF26A (ENSHGLG00000005481)	TMEM179 (ENSHGLG00000047899)	ENSHGLG00000011755
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Kangaroo rat	MODERN SPECIES	321	ENSDORG00000023868	Ppp2r5c (ENSDORG00000001990)	ENSDORG00000026512	Dync1h1 (ENSDORG00000006209)	Hsp90aa1 (ENSDORG00000005569) #7	ENSDORG00000005570 #9	ENSDORG00000026970 #10	Cinp (ENSDORG00000027562) #12	Tecpr2 (ENSDORG00000006181) #14	Rcor1 (ENSDORG00000024031) #13	Traf3 (ENSDORG00000013734) #15	Cdc42bpb (ENSDORG00000002987) #16	Tnfaip2 (ENSDORG00000010551) #19	ENSDORG00000027857	Eif5 (ENSDORG00000023754) #20	Mark3 (ENSDORG00000002737) #22	Trmt61a (ENSDORG00000014905) #23	Bag5 (ENSDORG00000014907)	Klc1 (ENSDORG00000002648) #25	Xrcc3 (ENSDORG00000002650) #26	Zfyve21 (ENSDORG00000002651) #27	Ppp1r13b (ENSDORG00000002653) #28	ENSDORG00000023525 #29	Tdrd9 (ENSDORG00000015167) #31	Aspg (ENSDORG00000023228) #32	Kif26a (ENSDORG00000029634)	ENSDORG00000029317	Inf2 (ENSDORG00000005106)	Adssl1 (ENSDORG00000009132)	ENSDORG00000027134	ENSDORG00000005935
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Lesser Egyptian jerboa	MODERN SPECIES	122	ENSJJAG00000023475	Dicer1 (ENSJJAG00000010766)	Gsc (ENSJJAG00000014492)	ENSJJAG00000017595	Serpina5 (ENSJJAG00000020864)	Serpina12 (ENSJJAG00000009472)	Serpina11 (ENSJJAG00000010522)	ENSJJAG00000024304	ENSJJAG00000014013	Serpina6 (ENSJJAG00000014466)	Serpina10 (ENSJJAG00000015823)	Ppp4r4 (ENSJJAG00000021389)	Ddx24 (ENSJJAG00000010842)	Otub2 (ENSJJAG00000018693)	Eif5 (ENSJJAG00000011403) #20	Mark3 (ENSJJAG00000022266) #22	Ckb (ENSJJAG00000022169) #24	Trmt61a (ENSJJAG00000000428) #23	Bag5 (ENSJJAG00000000717)	ENSJJAG00000003577	Klc1 (ENSJJAG00000014112) #25	Xrcc3 (ENSJJAG00000013625) #26	Zfyve21 (ENSJJAG00000016650) #27	ENSJJAG00000018703 #28	ENSJJAG00000020211 #29	Tdrd9 (ENSJJAG00000022462) #31	Aspg (ENSJJAG00000022213) #32	Kif26a (ENSJJAG00000000781)	A530016L24Rik (ENSJJAG00000020219)	Tmem179 (ENSJJAG00000021084)	Inf2 (ENSJJAG00000023781)
Muroidea	ANCESTRAL SPECIES	16	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Upper Galilee mountains blind mole rat	MODERN SPECIES	1886	Hsp90aa1 (ENSNGAG00000013224) #7	ENSNGAG00000014985 #9	Mok (ENSNGAG00000024041) #10	Zfp839 (ENSNGAG00000023594) #11	Cinp (ENSNGAG00000022938) #12	Tecpr2 (ENSNGAG00000021277) #14	Ankrd9 (ENSNGAG00000013700)	Rcor1 (ENSNGAG00000011313) #13	Traf3 (ENSNGAG00000011396) #15	Amn (ENSNGAG00000023699)	Cdc42bpb (ENSNGAG00000003840) #16	Lbhd2 (ENSNGAG00000021417)	Exoc3l4 (ENSNGAG00000023525) #18	Tnfaip2 (ENSNGAG00000015194) #19	Eif5 (ENSNGAG00000023359) #20	Mark3 (ENSNGAG00000010679) #22	Ckb (ENSNGAG00000002315) #24	Trmt61a (ENSNGAG00000021119) #23	Bag5 (ENSNGAG00000020903)	Coa8 (ENSNGAG00000018482)	Klc1 (ENSNGAG00000022246) #25	ENSNGAG00000022009 #26	Zfyve21 (ENSNGAG00000020752) #27	ENSNGAG00000015662 #28	Atp5mpl (ENSNGAG00000021885) #29	Rd3l (ENSNGAG00000021769) #30	Tdrd9 (ENSNGAG00000021858) #31	Aspg (ENSNGAG00000016677) #32	Kif26a (ENSNGAG00000021429)
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00860000135782	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Mus	ANCESTRAL SPECIES	10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00860000135782	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214
Mus_A	ANCESTRAL SPECIES	17	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00860000135782	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214
Mus_B	ANCESTRAL SPECIES	17	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00860000135782	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214
Mouse	MODERN SPECIES	3	Mok (ENSMUSG00000056458) #10	Zfp839 (ENSMUSG00000021271) #11	Cinp (ENSMUSG00000021276) #12	Tecpr2 (ENSMUSG00000021275) #14	Ankrd9 (ENSMUSG00000037904)	Rcor1 (ENSMUSG00000037896) #13	Traf3 (ENSMUSG00000021277) #15	Amn (ENSMUSG00000021278)	Cdc42bpb (ENSMUSG00000021279) #16	Lbhd2 (ENSMUSG00000087075)	Exoc3l4 (ENSMUSG00000021280) #18	Tnfaip2 (ENSMUSG00000021281) #19	Gm266 (ENSMUSG00000010529)	ENSMUSG00000121570	Eif5 (ENSMUSG00000021282) #20	Mark3 (ENSMUSG00000007411) #22	Ckb (ENSMUSG00000001270) #24	Trmt61a (ENSMUSG00000060950) #23	Bag5 (ENSMUSG00000049792)	Coa8 (ENSMUSG00000037787)	Klc1 (ENSMUSG00000021288) #25	Xrcc3 (ENSMUSG00000021287) #26	Zfyve21 (ENSMUSG00000021286) #27	Ppp1r13b (ENSMUSG00000021285) #28	Atp5mpl (ENSMUSG00000021290) #29	Tdrd9 (ENSMUSG00000054003) #31	Rd3l (ENSMUSG00000091402) #30	Aspg (ENSMUSG00000037686) #32	Kif26a (ENSMUSG00000021294)	A530016L24Rik (ENSMUSG00000043122)	Tmem179 (ENSMUSG00000054013)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00860000135782	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214
Steppe mouse	MODERN SPECIES	3176	Tecpr2 (ENSMSIG00000008435) #14	Ankrd9 (ENSMSIG00000008520)	ENSMSIG00000008556 #13	ENSMSIG00000008566	Traf3 (ENSMSIG00000008575) #15	Amn (ENSMSIG00000008673)	Cdc42bpb (ENSMSIG00000008716) #16	ENSMSIG00000008843	Lbhd2 (ENSMSIG00000008862)	Exoc3l4 (ENSMSIG00000008877) #18	ENSMSIG00000008902	Tnfaip2 (ENSMSIG00000008909) #19	Gm266 (ENSMSIG00000008953)	Eif5 (ENSMSIG00000008970) #20	ENSMSIG00000009125	Mark3 (ENSMSIG00000009190) #22	Ckb (ENSMSIG00000010628) #24	Trmt61a (ENSMSIG00000010648) #23	Bag5 (ENSMSIG00000010672)	ENSMSIG00000010681
spretus	MODERN SPECIES	3	Mok (MGP_SPRETEiJ_G0018969) #10	Zfp839 (MGP_SPRETEiJ_G0018970) #11	Cinp (MGP_SPRETEiJ_G0018971) #12	Tecpr2 (MGP_SPRETEiJ_G0018972) #14	Ankrd9 (MGP_SPRETEiJ_G0018973)	Rcor1 (MGP_SPRETEiJ_G0018974) #13	MGP_SPRETEiJ_G0018975	Traf3 (MGP_SPRETEiJ_G0018976) #15	Amn (MGP_SPRETEiJ_G0018977)	Cdc42bpb (MGP_SPRETEiJ_G0018978) #16	Lbhd2 (MGP_SPRETEiJ_G0018979)	Exoc3l4 (MGP_SPRETEiJ_G0018980) #18	Tnfaip2 (MGP_SPRETEiJ_G0018981) #19	Gm266 (MGP_SPRETEiJ_G0018982)	Eif5 (MGP_SPRETEiJ_G0018983) #20	Mark3 (MGP_SPRETEiJ_G0018984) #22	Ckb (MGP_SPRETEiJ_G0018985) #24	Trmt61a (MGP_SPRETEiJ_G0018986) #23	Bag5 (MGP_SPRETEiJ_G0018987)	Coa8 (MGP_SPRETEiJ_G0018988)	Klc1 (MGP_SPRETEiJ_G0018989) #25	Xrcc3 (MGP_SPRETEiJ_G0018990) #26	Zfyve21 (MGP_SPRETEiJ_G0018991) #27	Ppp1r13b (MGP_SPRETEiJ_G0018992) #28	Atp5mpl (MGP_SPRETEiJ_G0018993) #29	Tdrd9 (MGP_SPRETEiJ_G0018994) #31	Rd3l (MGP_SPRETEiJ_G0018995) #30	Aspg (MGP_SPRETEiJ_G0018996) #32	Kif26a (MGP_SPRETEiJ_G0018997)	MGP_SPRETEiJ_G0018998	A530016L24Rik (MGP_SPRETEiJ_G0018999)
Ryukyu mouse	MODERN SPECIES	3	Mok (MGP_CAROLIEiJ_G0018120) #10	Zfp839 (MGP_CAROLIEiJ_G0018121) #11	MGP_CAROLIEiJ_G0018122 #12	Tecpr2 (MGP_CAROLIEiJ_G0018123) #14	Ankrd9 (MGP_CAROLIEiJ_G0018124)	Rcor1 (MGP_CAROLIEiJ_G0018125) #13	MGP_CAROLIEiJ_G0018126	Traf3 (MGP_CAROLIEiJ_G0018127) #15	Amn (MGP_CAROLIEiJ_G0018128)	Cdc42bpb (MGP_CAROLIEiJ_G0018129) #16	Lbhd2 (MGP_CAROLIEiJ_G0018130)	Exoc3l4 (MGP_CAROLIEiJ_G0018131) #18	Tnfaip2 (MGP_CAROLIEiJ_G0018132) #19	Gm266 (MGP_CAROLIEiJ_G0018133)	MGP_CAROLIEiJ_G0018134 #20	Mark3 (MGP_CAROLIEiJ_G0018135) #22	Ckb (MGP_CAROLIEiJ_G0018136) #24	Trmt61a (MGP_CAROLIEiJ_G0018137) #23	Bag5 (MGP_CAROLIEiJ_G0018138)	MGP_CAROLIEiJ_G0018139	Klc1 (MGP_CAROLIEiJ_G0018140) #25	Xrcc3 (MGP_CAROLIEiJ_G0018141) #26	Zfyve21 (MGP_CAROLIEiJ_G0018142) #27	Ppp1r13b (MGP_CAROLIEiJ_G0018143) #28	Atp5mpl (MGP_CAROLIEiJ_G0018144) #29	Tdrd9 (MGP_CAROLIEiJ_G0018145) #31	Rd3l (MGP_CAROLIEiJ_G0018146) #30	Aspg (MGP_CAROLIEiJ_G0018147) #32	Kif26a (MGP_CAROLIEiJ_G0018148)	MGP_CAROLIEiJ_G0018149	A530016L24Rik (MGP_CAROLIEiJ_G0018150)
Shrew mouse	MODERN SPECIES	20	Mok (MGP_PahariEiJ_G0029877) #10	Zfp839 (MGP_PahariEiJ_G0029878) #11	MGP_PahariEiJ_G0029879 #12	Tecpr2 (MGP_PahariEiJ_G0029880) #14	Ankrd9 (MGP_PahariEiJ_G0029881)	Rcor1 (MGP_PahariEiJ_G0029882) #13	MGP_PahariEiJ_G0029883	Traf3 (MGP_PahariEiJ_G0029884) #15	Amn (MGP_PahariEiJ_G0029885)	Cdc42bpb (MGP_PahariEiJ_G0029886) #16	Lbhd2 (MGP_PahariEiJ_G0029887)	Exoc3l4 (MGP_PahariEiJ_G0029888) #18	Tnfaip2 (MGP_PahariEiJ_G0029889) #19	Gm266 (MGP_PahariEiJ_G0029890)	Eif5 (MGP_PahariEiJ_G0029891) #20	Mark3 (MGP_PahariEiJ_G0029892) #22	Ckb (MGP_PahariEiJ_G0029893) #24	Trmt61a (MGP_PahariEiJ_G0029894) #23	Bag5 (MGP_PahariEiJ_G0029895)	Coa8 (MGP_PahariEiJ_G0029896)	Klc1 (MGP_PahariEiJ_G0029897) #25	Xrcc3 (MGP_PahariEiJ_G0029898) #26	Zfyve21 (MGP_PahariEiJ_G0029899) #27	Ppp1r13b (MGP_PahariEiJ_G0029900) #28	Atp5mpl (MGP_PahariEiJ_G0029901) #29	Tdrd9 (MGP_PahariEiJ_G0029902) #31	Rd3l (MGP_PahariEiJ_G0029903) #30	Aspg (MGP_PahariEiJ_G0029904) #32	Kif26a (MGP_PahariEiJ_G0029905)	MGP_PahariEiJ_G0029906	A530016L24Rik (MGP_PahariEiJ_G0029907)
Rat	MODERN SPECIES	16	Zfp839 (ENSRNOG00000031661) #11	Cinp (ENSRNOG00000008035) #12	Tecpr2 (ENSRNOG00000021904) #14	Ankrd9 (ENSRNOG00000008056)	Rcor1 (ENSRNOG00000049783) #13	ENSRNOG00000062855	Traf3 (ENSRNOG00000008145) #15	Amn (ENSRNOG00000009050)	Cdc42bpb (ENSRNOG00000009675) #16	Lbhd2 (ENSRNOG00000043137)	Exoc3l4 (ENSRNOG00000010111) #18	AABR07065589.1 (ENSRNOG00000053429)	Tnfaip2 (ENSRNOG00000010165) #19	Diras3 (ENSRNOG00000068695)	Eif5 (ENSRNOG00000010218) #20	Mark3 (ENSRNOG00000010330) #22	Ckb (ENSRNOG00000010872) #24	Trmt61a (ENSRNOG00000011398) #23	Bag5 (ENSRNOG00000058841)	Coa8 (ENSRNOG00000011542)	Klc1 (ENSRNOG00000011572) #25	Xrcc3 (ENSRNOG00000012141) #26	Zfyve21 (ENSRNOG00000012185) #27	Ppp1r13b (ENSRNOG00000012653) #28	ENSRNOG00000068254 #29	Tdrd9 (ENSRNOG00000053631) #31	Rd3l (ENSRNOG00000043031) #30	Aspg (ENSRNOG00000012843) #32	Kif26a (ENSRNOG00000013661)	C6h14orf180 (ENSRNOG00000013097)	Tmem179 (ENSRNOG00000013128)
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000007686.b.d.q #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00390000007686.b.d.q #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Chinese hamster chok1gshd	MODERN SPECIES	266	ENSCGRG00001021277 #9	Mok (ENSCGRG00001012968) #10	ENSCGRG00001010768 #11	Cinp (ENSCGRG00001004209) #12	Tecpr2 (ENSCGRG00001022916) #14	Ankrd9 (ENSCGRG00001021240)	Rcor1 (ENSCGRG00001020214) #13	Traf3 (ENSCGRG00001012901) #15	Amn (ENSCGRG00001010221)	Cdc42bpb (ENSCGRG00001017235) #16	Lbhd2 (ENSCGRG00001012003)	Exoc3l4 (ENSCGRG00001011425) #18	Tnfaip2 (ENSCGRG00001008498) #19	Gm266 (ENSCGRG00001014678)	ENSCGRG00001023334 #20	Mark3 (ENSCGRG00001017890) #22	Ckb (ENSCGRG00001021206) #24	Trmt61a (ENSCGRG00001020952) #23	Bag5 (ENSCGRG00001014270)	Coa8 (ENSCGRG00001020208)	Klc1 (ENSCGRG00001013287) #25	Xrcc3 (ENSCGRG00001011253) #26	Zfyve21 (ENSCGRG00001009837) #27	Ppp1r13b (ENSCGRG00001004903) #28	Atp5mpl (ENSCGRG00001000674) #29	Rd3l (ENSCGRG00001000482) #30	Tdrd9 (ENSCGRG00001023336) #31	Aspg (ENSCGRG00001020993) #32	Kif26a (ENSCGRG00001017284)	A530016L24Rik (ENSCGRG00001020089)	Tmem179 (ENSCGRG00001018078)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000013043	ENSMAUG00000013060	Chrm1 (ENSMAUG00000013069)	Slc22a6 (ENSMAUG00000013676)	Slc22a8 (ENSMAUG00000013177)	ENSMAUG00000013367	Slc22a19 (ENSMAUG00000013315)	Plaat5 (ENSMAUG00000013292)	Lgals12 (ENSMAUG00000014489)	Plaat3 (ENSMAUG00000013633)	Atl3 (ENSMAUG00000014736)	ENSMAUG00000013612	Zfta (ENSMAUG00000013334)	Spindoc (ENSMAUG00000013145)	ENSMAUG00000014179	ENSMAUG00000015638 #22	ENSMAUG00000013126	Rcor2 (ENSMAUG00000013529)	Naa40 (ENSMAUG00000013206)	Cox8a (ENSMAUG00000015109)	ENSMAUG00000013281	Macrod1 (ENSMAUG00000013811)	Flrt1 (ENSMAUG00000015484)	Stip1 (ENSMAUG00000015020)	Fermt3 (ENSMAUG00000014915)	Trpt1 (ENSMAUG00000014107)	Vegfb (ENSMAUG00000013835)	ENSMAUG00000013396	Bad (ENSMAUG00000013587)	Gpr137 (ENSMAUG00000013567)	Kcnk4 (ENSMAUG00000013496)
Golden Hamster	MODERN SPECIES	630	Ppp2r5c (ENSMAUG00000011316)	Dync1h1 (ENSMAUG00000022224)	1700001K19Rik (ENSMAUG00000019531)	ENSMAUG00000020978 #9	Mok (ENSMAUG00000015386) #10	Zfp839 (ENSMAUG00000001267) #11	ENSMAUG00000000734 #12	Tecpr2 (ENSMAUG00000011919) #14	Ankrd9 (ENSMAUG00000019567)	Traf3 (ENSMAUG00000021686) #15	Cdc42bpb (ENSMAUG00000022059) #16	Lbhd2 (ENSMAUG00000020246)	Exoc3l4 (ENSMAUG00000022110) #18	Tnfaip2 (ENSMAUG00000012833) #19	Eif5 (ENSMAUG00000001058) #20	Mark3 (ENSMAUG00000009057) #22	Ckb (ENSMAUG00000012909) #24	Trmt61a (ENSMAUG00000007728) #23	Bag5 (ENSMAUG00000012615)	Coa8 (ENSMAUG00000019799)	ENSMAUG00000004564 #25	Xrcc3 (ENSMAUG00000021117) #26	ENSMAUG00000021878 #27	Ppp1r13b (ENSMAUG00000001128) #28	ENSMAUG00000012836 #29	Rd3l (ENSMAUG00000013408) #30	Tdrd9 (ENSMAUG00000020617) #31	Aspg (ENSMAUG00000015535) #32	Kif26a (ENSMAUG00000020776)	A530016L24Rik (ENSMAUG00000009851)	Tmem179 (ENSMAUG00000001149)
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00390000007686.b.d.q #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000021942 #9	Mok (ENSPEMG00000022583) #10	Zfp839 (ENSPEMG00000024097) #11	Cinp (ENSPEMG00000022134) #12	Tecpr2 (ENSPEMG00000021467) #14	Ankrd9 (ENSPEMG00000024255)	Rcor1 (ENSPEMG00000028079) #13	Traf3 (ENSPEMG00000022996) #15	Amn (ENSPEMG00000006540)	Cdc42bpb (ENSPEMG00000023339) #16	Lbhd2 (ENSPEMG00000024190)	Exoc3l4 (ENSPEMG00000006944) #18	Tnfaip2 (ENSPEMG00000000511) #19	Gm266 (ENSPEMG00000029489)	Eif5 (ENSPEMG00000015312) #20	Mark3 (ENSPEMG00000010472) #22	Ckb (ENSPEMG00000017185) #24	Trmt61a (ENSPEMG00000023413) #23	Bag5 (ENSPEMG00000030905)	Coa8 (ENSPEMG00000013261)	Klc1 (ENSPEMG00000015453) #25	Xrcc3 (ENSPEMG00000012323) #26	Zfyve21 (ENSPEMG00000023106) #27	Ppp1r13b (ENSPEMG00000014348) #28	ENSPEMG00000024643 #29	Tdrd9 (ENSPEMG00000012496) #31	Rd3l (ENSPEMG00000017732) #30	Aspg (ENSPEMG00000009783) #32	Kif26a (ENSPEMG00000007760)	A530016L24Rik (ENSPEMG00000001566)	Tmem179 (ENSPEMG00000012685)
Prairie vole	MODERN SPECIES		ENSMOCG00000004179	ENSMOCG00000018133 #9	Mok (ENSMOCG00000016493) #10	Cinp (ENSMOCG00000019159) #12	Tecpr2 (ENSMOCG00000000369) #14	Ankrd9 (ENSMOCG00000002881)	Rcor1 (ENSMOCG00000012999) #13	Traf3 (ENSMOCG00000017772) #15	Amn (ENSMOCG00000001893)	ENSMOCG00000017882	Cdc42bpb (ENSMOCG00000021696) #16	Lbhd2 (ENSMOCG00000018196)	Exoc3l4 (ENSMOCG00000004296) #18	Tnfaip2 (ENSMOCG00000011420) #19	ENSMOCG00000021790 #20	Mark3 (ENSMOCG00000018347) #22	Ckb (ENSMOCG00000014242) #24	Trmt61a (ENSMOCG00000014726) #23	Bag5 (ENSMOCG00000015176)	Coa8 (ENSMOCG00000018572)	Klc1 (ENSMOCG00000016748) #25	Xrcc3 (ENSMOCG00000008144) #26	Zfyve21 (ENSMOCG00000013746) #27	Ppp1r13b (ENSMOCG00000017048) #28	Atp5mpl (ENSMOCG00000018303) #29	Tdrd9 (ENSMOCG00000017012) #31	ENSMOCG00000006567	Aspg (ENSMOCG00000011052) #32	Kif26a (ENSMOCG00000001640)	A530016L24Rik (ENSMOCG00000005085)	Tmem179 (ENSMOCG00000019593)
Tree shrew	MODERN SPECIES	4256																ENSTBEG00000005231 #22
Primates	ANCESTRAL SPECIES	2	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Tarsier	MODERN SPECIES	890															EIF5 (ENSTSYG00000008951) #20	MARK3 (ENSTSYG00000007550) #22
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Hominidae	ANCESTRAL SPECIES	14	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00910000148592	ENSGT01090000263418	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00910000148592	ENSGT01090000263418	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Pan	ANCESTRAL SPECIES	8	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00910000148592	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Bonobo	MODERN SPECIES	5	HSP90AA1 (ENSPPAG00000039109) #7	WDR20 (ENSPPAG00000037285) #9	MOK (ENSPPAG00000029403) #10	ZNF839 (ENSPPAG00000027810) #11	CINP (ENSPPAG00000025476) #12	TECPR2 (ENSPPAG00000036325) #14	ENSPPAG00000006421 #13	TRAF3 (ENSPPAG00000028105) #15	AMN (ENSPPAG00000033035)	CDC42BPB (ENSPPAG00000043371) #16	LBHD2 (ENSPPAG00000017372) #17	EXOC3L4 (ENSPPAG00000026559) #18	TNFAIP2 (ENSPPAG00000027880) #19	ENSPPAG00000014698	EIF5 (ENSPPAG00000039883) #20	MARK3 (ENSPPAG00000030786) #22	ENSPPAG00000019639 #24	TRMT61A (ENSPPAG00000027799) #23	BAG5 (ENSPPAG00000018351)	COA8 (ENSPPAG00000021372)	KLC1 (ENSPPAG00000036216) #25	XRCC3 (ENSPPAG00000038589) #26	ENSPPAG00000039040 #27	PPP1R13B (ENSPPAG00000043472) #28	ENSPPAG00000034328 #29	RD3L (ENSPPAG00000025116) #30	TDRD9 (ENSPPAG00000027180) #31	ASPG (ENSPPAG00000000731) #32	KIF26A (ENSPPAG00000037737)	ENSPPAG00000032971	C14orf180 (ENSPPAG00000041150)
Chimpanzee	MODERN SPECIES	5	WDR20 (ENSPTRG00000006737) #9	MOK (ENSPTRG00000006738) #10	ZNF839 (ENSPTRG00000006740) #11	CINP (ENSPTRG00000006741) #12	TECPR2 (ENSPTRG00000024401) #14	ANKRD9 (ENSPTRG00000006743)	RCOR1 (ENSPTRG00000006744) #13	TRAF3 (ENSPTRG00000006746) #15	AMN (ENSPTRG00000006747)	CDC42BPB (ENSPTRG00000006748) #16	LBHD2 (ENSPTRG00000051370) #17	EXOC3L4 (ENSPTRG00000030661) #18	TNFAIP2 (ENSPTRG00000006749) #19	ENSPTRG00000050082	EIF5 (ENSPTRG00000006753) #20	MARK3 (ENSPTRG00000006754) #22	CKB (ENSPTRG00000006756) #24	TRMT61A (ENSPTRG00000006757) #23	BAG5 (ENSPTRG00000006758)	COA8 (ENSPTRG00000043726)	KLC1 (ENSPTRG00000006760) #25	XRCC3 (ENSPTRG00000006761) #26	ZFYVE21 (ENSPTRG00000006762) #27	PPP1R13B (ENSPTRG00000006763) #28	ATP5MJ (ENSPTRG00000006764) #29	TDRD9 (ENSPTRG00000006765) #31	RD3L (ENSPTRG00000047159) #30	ASPG (ENSPTRG00000006766) #32	KIF26A (ENSPTRG00000033926)	ENSPTRG00000048997	C14H14orf180 (ENSPTRG00000006769)
Human	MODERN SPECIES	5	WDR20 (ENSG00000140153) #9	MOK (ENSG00000080823) #10	ZNF839 (ENSG00000022976) #11	CINP (ENSG00000100865) #12	TECPR2 (ENSG00000196663) #14	ANKRD9 (ENSG00000156381)	RCOR1 (ENSG00000089902) #13	TRAF3 (ENSG00000131323) #15	AMN (ENSG00000166126)	CDC42BPB (ENSG00000198752) #16	LBHD2 (ENSG00000283071) #17	EXOC3L4 (ENSG00000205436) #18	TNFAIP2 (ENSG00000185215) #19	EIF5 (ENSG00000100664) #20	ENSG00000291313	MARK3 (ENSG00000075413) #22	CKB (ENSG00000166165) #24	TRMT61A (ENSG00000166166) #23	BAG5 (ENSG00000166170)	KLC1 (ENSG00000126214) #25	COA8 (ENSG00000256053)	ENSG00000256500	XRCC3 (ENSG00000126215) #26	ZFYVE21 (ENSG00000100711) #27	PPP1R13B (ENSG00000088808) #28	ATP5MJ (ENSG00000156411) #29	TDRD9 (ENSG00000156414) #31	RD3L (ENSG00000227729) #30	ASPG (ENSG00000166183) #32	KIF26A (ENSG00000066735)	TMEM179 (ENSG00000258986)
Gorilla	MODERN SPECIES	5	WDR20 (ENSGGOG00000006046) #9	MOK (ENSGGOG00000006052) #10	ZNF839 (ENSGGOG00000006061) #11	CINP (ENSGGOG00000006071) #12	TECPR2 (ENSGGOG00000003523) #14	ENSGGOG00000037648	RCOR1 (ENSGGOG00000005323) #13	ENSGGOG00000041502	TRAF3 (ENSGGOG00000004273) #15	ENSGGOG00000004279	CDC42BPB (ENSGGOG00000004285) #16	LBHD2 (ENSGGOG00000044036) #17	EXOC3L4 (ENSGGOG00000016704) #18	ENSGGOG00000023407 #19	ENSGGOG00000041315	MARK3 (ENSGGOG00000007387) #22	ENSGGOG00000007394 #24	TRMT61A (ENSGGOG00000007401) #23	BAG5 (ENSGGOG00000001790)	COA8 (ENSGGOG00000043278)	KLC1 (ENSGGOG00000009580) #25	XRCC3 (ENSGGOG00000009589) #26	ZFYVE21 (ENSGGOG00000009593) #27	PPP1R13B (ENSGGOG00000009600) #28	TDRD9 (ENSGGOG00000000812) #31	RD3L (ENSGGOG00000038139) #30	ASPG (ENSGGOG00000003238) #32	KIF26A (ENSGGOG00000015026)	ENSGGOG00000010761	C14orf180 (ENSGGOG00000014934)	TMEM179 (ENSGGOG00000013426)
Orangutan	MODERN SPECIES	5	DYNC1H1 (ENSPPYG00000035711)	HSP90AA1 (ENSPPYG00000006153) #7	WDR20 (ENSPPYG00000006154) #9	MOK (ENSPPYG00000006155) #10	ZNF839 (ENSPPYG00000006157) #11	CINP (ENSPPYG00000006158) #12	TECPR2 (ENSPPYG00000006159) #14	ANKRD9 (ENSPPYG00000006160)	RCOR1 (ENSPPYG00000006161) #13	TRAF3 (ENSPPYG00000006162) #15	AMN (ENSPPYG00000006163)	CDC42BPB (ENSPPYG00000006164) #16	EXOC3L4 (ENSPPYG00000006165) #18	TNFAIP2 (ENSPPYG00000006166) #19	EIF5 (ENSPPYG00000006169) #20	MARK3 (ENSPPYG00000006170) #22	CKB (ENSPPYG00000006171) #24	TRMT61A (ENSPPYG00000006172) #23	ENSPPYG00000041007	ENSPPYG00000006174	KLC1 (ENSPPYG00000006175) #25	XRCC3 (ENSPPYG00000006177) #26	ZFYVE21 (ENSPPYG00000006178) #27	PPP1R13B (ENSPPYG00000006179) #28	ENSPPYG00000041171 #29	TDRD9 (ENSPPYG00000006180) #31	RD3L (ENSPPYG00000041192) #30	ASPG (ENSPPYG00000006181) #32	KIF26A (ENSPPYG00000006182)	ENSPPYG00000039613	ENSPPYG00000006185
Gibbon	MODERN SPECIES	14	DYNC1H1 (ENSNLEG00000015806)	HSP90AA1 (ENSNLEG00000015925) #7	WDR20 (ENSNLEG00000015977) #9	MOK (ENSNLEG00000015986) #10	ZNF839 (ENSNLEG00000015996) #11	CINP (ENSNLEG00000016009) #12	TECPR2 (ENSNLEG00000016024) #14	ENSNLEG00000035545	RCOR1 (ENSNLEG00000029157) #13	TRAF3 (ENSNLEG00000016049) #15	CDC42BPB (ENSNLEG00000016074) #16	ENSNLEG00000028415 #17	ENSNLEG00000016089 #18	ENSNLEG00000016091 #19	EIF5 (ENSNLEG00000027211) #20	MARK3 (ENSNLEG00000016129) #22	CKB (ENSNLEG00000016174) #24	ENSNLEG00000016202 #23	BAG5 (ENSNLEG00000016206)	COA8 (ENSNLEG00000028956)	KLC1 (ENSNLEG00000016208) #25	XRCC3 (ENSNLEG00000016212) #26	ZFYVE21 (ENSNLEG00000033101) #27	PPP1R13B (ENSNLEG00000016238) #28	ENSNLEG00000016248 #29	RD3L (ENSNLEG00000029602) #30	TDRD9 (ENSNLEG00000016251) #31	ASPG (ENSNLEG00000016278) #32	KIF26A (ENSNLEG00000016290)	ENSNLEG00000016298	ENSNLEG00000016306
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Rhinopithecus	ANCESTRAL SPECIES	8	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00720000108839.b	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.jb.a #29	ENSGT00390000016760.ib #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Black snub-nosed monkey	MODERN SPECIES	1533		ENSRBIG00000031609 #10	ZNF839 (ENSRBIG00000040573) #11	CINP (ENSRBIG00000019672) #12	TECPR2 (ENSRBIG00000031794) #14	ENSRBIG00000006177	RCOR1 (ENSRBIG00000038321) #13	TRAF3 (ENSRBIG00000044448) #15	AMN (ENSRBIG00000036374)	CDC42BPB (ENSRBIG00000028315) #16	LBHD2 (ENSRBIG00000007850) #17	EXOC3L4 (ENSRBIG00000033350) #18	TNFAIP2 (ENSRBIG00000008664) #19	ENSRBIG00000021907	ENSRBIG00000038446 #20	MARK3 (ENSRBIG00000044239) #22	ENSRBIG00000044871 #24	TRMT61A (ENSRBIG00000042669) #23	BAG5 (ENSRBIG00000041428)	ENSRBIG00000039874
Golden snub-nosed monkey	MODERN SPECIES	2871	WDR20 (ENSRROG00000033804) #9	MOK (ENSRROG00000045030) #10	ZNF839 (ENSRROG00000039783) #11	CINP (ENSRROG00000045478) #12	TECPR2 (ENSRROG00000042303) #14	ENSRROG00000019641	RCOR1 (ENSRROG00000033826) #13	TRAF3 (ENSRROG00000045084) #15	CDC42BPB (ENSRROG00000034604) #16	LBHD2 (ENSRROG00000034363) #17	EXOC3L4 (ENSRROG00000040920) #18	TNFAIP2 (ENSRROG00000039057) #19	ENSRROG00000027605	EIF5 (ENSRROG00000037169) #20	ENSRROG00000043289	MARK3 (ENSRROG00000034327) #22	ENSRROG00000039088 #24	TRMT61A (ENSRROG00000042448) #23	BAG5 (ENSRROG00000042247)	COA8 (ENSRROG00000042485)	KLC1 (ENSRROG00000034856) #25	XRCC3 (ENSRROG00000035019) #26	ZFYVE21 (ENSRROG00000034527) #27	PPP1R13B (ENSRROG00000042853) #28
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214
Vervet Monkey	MODERN SPECIES	16	DYNC1H1 (ENSCSAG00000010279)	HSP90AA1 (ENSCSAG00000010250) ##7	WDR20 (ENSCSAG00000010243) #9	MOK (ENSCSAG00000010230) #10	ENSCSAG00000010179 #11	CINP (ENSCSAG00000010173) #12	TECPR2 (ENSCSAG00000010166) #14	ANKRD9 (ENSCSAG00000019585)	RCOR1 (ENSCSAG00000010154) #13	TRAF3 (ENSCSAG00000010146) #15	AMN (ENSCSAG00000010135)	CDC42BPB (ENSCSAG00000010126) #16	EXOC3L4 (ENSCSAG00000010097) #18	TNFAIP2 (ENSCSAG00000010089) #19	EIF5 (ENSCSAG00000010080) #20	MARK3 (ENSCSAG00000010062) #22	TRMT61A (ENSCSAG00000010059) #23	BAG5 (ENSCSAG00000010051)	COA8 (ENSCSAG00000010045)	KLC1 (ENSCSAG00000010003) #25	XRCC3 (ENSCSAG00000009906) #26	ZFYVE21 (ENSCSAG00000009871) #27	PPP1R13B (ENSCSAG00000009859) #28	ATP5MJ (ENSCSAG00000009849) #29	TDRD9 (ENSCSAG00000009835) #31	RD3L (ENSCSAG00000009807) #30	ASPG (ENSCSAG00000009792) #32	KIF26A (ENSCSAG00000009760)	ENSCSAG00000019586	ENSCSAG00000019587	C14orf180 (ENSCSAG00000009732)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327
Macaca	ANCESTRAL SPECIES	1	ENSGT01020000230401.a.a.b.b.t.eb #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327
Pig-tailed macaque	MODERN SPECIES	160																MARK3 (ENSMNEG00000029707) #22	CKB (ENSMNEG00000038352) #24	TRMT61A (ENSMNEG00000036125) #23	BAG5 (ENSMNEG00000040925)	COA8 (ENSMNEG00000043157)	KLC1 (ENSMNEG00000028461) #25	XRCC3 (ENSMNEG00000028725) #26	ZFYVE21 (ENSMNEG00000034393) #27	PPP1R13B (ENSMNEG00000044596) #28	ENSMNEG00000041294 #29	TDRD9 (ENSMNEG00000044098) #31	RD3L (ENSMNEG00000037706) #30	ASPG (ENSMNEG00000043858) #32	KIF26A (ENSMNEG00000037576)	C14orf180 (ENSMNEG00000044931)	TMEM179 (ENSMNEG00000000690)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.a.b.b.b.a.b.a.a	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.b.a.b	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.b.b	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Crab-eating macaque	MODERN SPECIES	17	CINP (ENSMFAG00000038439) #12	TECPR2 (ENSMFAG00000033854) #14	RCOR1 (ENSMFAG00000038028) #13	TRAF3 (ENSMFAG00000045167) #15	ENSMFAG00000064844	ENSMFAG00000003158	ENSMFAG00000054280	ENSMFAG00000058841	CDC42BPB (ENSMFAG00000044066) #16	LBHD2 (ENSMFAG00000038146) #17	EXOC3L4 (ENSMFAG00000002426) #18	TNFAIP2 (ENSMFAG00000040536) #19	ENSMFAG00000051925	ENSMFAG00000063728	EIF5 (ENSMFAG00000033053) #20	MARK3 (ENSMFAG00000001291) #22	BAG5 (ENSMFAG00000046271)	TRMT61A (ENSMFAG00000063054) #23	COA8 (ENSMFAG00000040670)	ENSMFAG00000051215	ENSMFAG00000056586	KLC1 (ENSMFAG00000030493) #25	XRCC3 (ENSMFAG00000045469) #26	ZFYVE21 (ENSMFAG00000043178) #27	PPP1R13B (ENSMFAG00000000305) #28	ENSMFAG00000045832 #29	TDRD9 (ENSMFAG00000001293) #31	RD3L (ENSMFAG00000035352) #30	ENSMFAG00000055064	ASPG (ENSMFAG00000032841) #32	ENSMFAG00000048273
Rhesus	MODERN SPECIES	17	ENSMMUG00000057818	ANKRD9 (ENSMMUG00000016889)	ENSMMUG00000055215	RCOR1 (ENSMMUG00000005845) #13	ENSMMUG00000019552	TRAF3 (ENSMMUG00000011752) #15	ENSMMUG00000011751	AMN (ENSMMUG00000039505)	CDC42BPB (ENSMMUG00000008380) #16	LBHD2 (ENSMMUG00000048661) #17	EXOC3L4 (ENSMMUG00000029186) #18	TNFAIP2 (ENSMMUG00000021634) #19	ENSMMUG00000051640	ENSMMUG00000061910	EIF5 (ENSMMUG00000005630) #20	MARK3 (ENSMMUG00000003641) #22	ENSMMUG00000051448	CKB (ENSMMUG00000049145) #24	TRMT61A (ENSMMUG00000007673) #23	BAG5 (ENSMMUG00000017005)	KLC1 (ENSMMUG00000006803) #25	XRCC3 (ENSMMUG00000029181) #26	ZFYVE21 (ENSMMUG00000018121) #27	PPP1R13B (ENSMMUG00000018123) #28	ATP5MJ (ENSMMUG00000004915) #29	TDRD9 (ENSMMUG00000006243) #31	RD3L (ENSMMUG00000001698) #30	ENSMMUG00000055793	ASPG (ENSMMUG00000014295) #32	KIF26A (ENSMMUG00000009477)	ENSMMUG00000063241
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Olive baboon	MODERN SPECIES	17	DYNC1H1 (ENSPANG00000036030)	HSP90AA1 (ENSPANG00000021967) #7	WDR20 (ENSPANG00000012337) #9	MOK (ENSPANG00000017500) #10	ZNF839 (ENSPANG00000025531) #11	CINP (ENSPANG00000033670) #12	TECPR2 (ENSPANG00000018047) #14	RCOR1 (ENSPANG00000018049) #13	TRAF3 (ENSPANG00000018050) #15	AMN (ENSPANG00000016601)	CDC42BPB (ENSPANG00000025197) #16	LBHD2 (ENSPANG00000029706) #17	EXOC3L4 (ENSPANG00000021764) #18	TNFAIP2 (ENSPANG00000016599) #19	EIF5 (ENSPANG00000004814) #20	MARK3 (ENSPANG00000000644) #22	CKB (ENSPANG00000006942) #24	TRMT61A (ENSPANG00000007028) #23	BAG5 (ENSPANG00000017498)	COA8 (ENSPANG00000004813)	KLC1 (ENSPANG00000012335) #25	XRCC3 (ENSPANG00000015712) #26	ZFYVE21 (ENSPANG00000016273) #27	PPP1R13B (ENSPANG00000016275) #28	ENSPANG00000031228	RD3L (ENSPANG00000017601) #30	TDRD9 (ENSPANG00000004811) #31	ASPG (ENSPANG00000000882) #32	KIF26A (ENSPANG00000000883)	C14orf180 (ENSPANG00000037690)	TMEM179 (ENSPANG00000016733)
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00910000147412	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Drill	MODERN SPECIES	1071	ENSMLEG00000040549 #7	WDR20 (ENSMLEG00000039980) #9	MOK (ENSMLEG00000042545) #10	ZNF839 (ENSMLEG00000028083) #11	CINP (ENSMLEG00000037611) #12	TECPR2 (ENSMLEG00000030025) #14	ENSMLEG00000039221	RCOR1 (ENSMLEG00000031095) #13	TRAF3 (ENSMLEG00000032977) #15	AMN (ENSMLEG00000043700)	CDC42BPB (ENSMLEG00000036361) #16	LBHD2 (ENSMLEG00000002402) #17	EXOC3L4 (ENSMLEG00000042355) #18	TNFAIP2 (ENSMLEG00000044100) #19	EIF5 (ENSMLEG00000035191) #20	MARK3 (ENSMLEG00000038559) #22	ENSMLEG00000035313	ENSMLEG00000033501 #24	TRMT61A (ENSMLEG00000027585) #23	BAG5 (ENSMLEG00000033188)	COA8 (ENSMLEG00000041876)	KLC1 (ENSMLEG00000033740) #25	XRCC3 (ENSMLEG00000043504) #26	ZFYVE21 (ENSMLEG00000037745) #27	PPP1R13B (ENSMLEG00000034583) #28
Sooty mangabey	MODERN SPECIES	249	WDR20 (ENSCATG00000030964) #9	MOK (ENSCATG00000026368) #10	ZNF839 (ENSCATG00000038367) #11	CINP (ENSCATG00000035509) #12	TECPR2 (ENSCATG00000030527) #14	ANKRD9 (ENSCATG00000019355)	RCOR1 (ENSCATG00000029458) #13	ENSCATG00000029606	TRAF3 (ENSCATG00000018109) #15	AMN (ENSCATG00000040408)	CDC42BPB (ENSCATG00000017326) #16	LBHD2 (ENSCATG00000044011) #17	EXOC3L4 (ENSCATG00000043501) #18	TNFAIP2 (ENSCATG00000019272) #19	EIF5 (ENSCATG00000044001) #20	MARK3 (ENSCATG00000042055) #22	CKB (ENSCATG00000044021) #24	TRMT61A (ENSCATG00000000028) #23	BAG5 (ENSCATG00000034339)	COA8 (ENSCATG00000036924)	KLC1 (ENSCATG00000031713) #25	XRCC3 (ENSCATG00000043378) #26	ZFYVE21 (ENSCATG00000030160) #27	PPP1R13B (ENSCATG00000043796) #28	ENSCATG00000040699	TDRD9 (ENSCATG00000032905) #31	RD3L (ENSCATG00000030191) #30	ASPG (ENSCATG00000038024) #32	KIF26A (ENSCATG00000035120)	C14orf180 (ENSCATG00000027034)	ENSCATG00000020497
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00390000007686.b.d.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.b ##20	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b.k.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Cebidae	ANCESTRAL SPECIES	3	ENSGT01020000230401.a.a.b.b.s.b ##7	ENSGT00390000007686.b.d.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b.k.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT01020000230401.a.a.b.b.s.b ##7	ENSGT00390000007686.b.d.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b.k.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327
Capuchin	MODERN SPECIES	338														ENSCCAG00000019593	EIF5 (ENSCCAG00000018461) #20	MARK3 (ENSCCAG00000027915) #22	CKB (ENSCCAG00000036759) #24	TRMT61A (ENSCCAG00000021969) #23	BAG5 (ENSCCAG00000030035)	COA8 (ENSCCAG00000024599)	KLC1 (ENSCCAG00000018360) #25	XRCC3 (ENSCCAG00000038040) #26	ZFYVE21 (ENSCCAG00000027784) #27	PPP1R13B (ENSCCAG00000033609) #28	ENSCCAG00000035325	ENSCCAG00000012217	TDRD9 (ENSCCAG00000022528) #31	RD3L (ENSCCAG00000034127) #30	ASPG (ENSCCAG00000014047) #32	KIF26A (ENSCCAG00000020022)	ENSCCAG00000031711
Bolivian squirrel monkey	MODERN SPECIES	98	MOK (ENSSBOG00000027905) #10	ZNF839 (ENSSBOG00000011469) #11	CINP (ENSSBOG00000014042) #12	TECPR2 (ENSSBOG00000029184) #14	RCOR1 (ENSSBOG00000027987) #13	TRAF3 (ENSSBOG00000011271) #15	AMN (ENSSBOG00000035221)	CDC42BPB (ENSSBOG00000027833) #16	LBHD2 (ENSSBOG00000021611) #17	EXOC3L4 (ENSSBOG00000019447) #18	TNFAIP2 (ENSSBOG00000022024) #19	ENSSBOG00000029015	ENSSBOG00000025966 ##20	ENSSBOG00000024395	ENSSBOG00000034185	MARK3 (ENSSBOG00000033976) #22	ENSSBOG00000027968 #24	TRMT61A (ENSSBOG00000022999) #23	BAG5 (ENSSBOG00000001198)	COA8 (ENSSBOG00000019622)	KLC1 (ENSSBOG00000029112) #25	XRCC3 (ENSSBOG00000028542) #26	ZFYVE21 (ENSSBOG00000026863) #27	PPP1R13B (ENSSBOG00000030285) #28	ENSSBOG00000006745	RD3L (ENSSBOG00000035782) #30	TDRD9 (ENSSBOG00000027466) #31	ENSSBOG00000020362	ASPG (ENSSBOG00000032975) #32	KIF26A (ENSSBOG00000025778)	C14orf180 (ENSSBOG00000020567)
Marmoset	MODERN SPECIES	1	ENSCJAG00000083784	MOK (ENSCJAG00000009899) #10	ZNF839 (ENSCJAG00000009880) #11	CINP (ENSCJAG00000009870) #12	TECPR2 (ENSCJAG00000009815) #14	ANKRD9 (ENSCJAG00000009811)	RCOR1 (ENSCJAG00000009784) #13	TRAF3 (ENSCJAG00000009729) #15	AMN (ENSCJAG00000003281)	CDC42BPB (ENSCJAG00000003298) #16	LBHD2 (ENSCJAG00000048188) #17	EXOC3L4 (ENSCJAG00000017071) #18	TNFAIP2 (ENSCJAG00000017086) #19	ENSCJAG00000086072	ENSCJAG00000017104 #20	MARK3 (ENSCJAG00000038489) #22	CKB (ENSCJAG00000012790) #24	TRMT61A (ENSCJAG00000017117) #23	BAG5 (ENSCJAG00000017123)	COA8 (ENSCJAG00000044883)	KLC1 (ENSCJAG00000017134) #25	XRCC3 (ENSCJAG00000017182) #26	ZFYVE21 (ENSCJAG00000017190) #27	PPP1R13B (ENSCJAG00000017204) #28	ATP5MJ (ENSCJAG00000044960) #29	TDRD9 (ENSCJAG00000017235) #31	RD3L (ENSCJAG00000082473) #30	KIF26A (ENSCJAG00000017272)	ENSCJAG00000007904	TMEM179 (ENSCJAG00000069879)	ENSCJAG00000057715
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	181																ENSANAG00000000853 #22
Mas night monkey	MODERN SPECIES	831	WDR20 (ENSANAG00000022527) #9	MOK (ENSANAG00000037905) #10	ZNF839 (ENSANAG00000032749) #11	ENSANAG00000029137 #12	TECPR2 (ENSANAG00000035963) #14	ANKRD9 (ENSANAG00000013963)	RCOR1 (ENSANAG00000036522) #13	ENSANAG00000037392	TRAF3 (ENSANAG00000022729) #15	AMN (ENSANAG00000026321)	CDC42BPB (ENSANAG00000026973) #16	LBHD2 (ENSANAG00000015116) #17	EXOC3L4 (ENSANAG00000036047) #18	TNFAIP2 (ENSANAG00000021205) #19	ENSANAG00000037390 ##20	MARK3 (ENSANAG00000022809) #22	ENSANAG00000038119	ENSANAG00000028580 #24	TRMT61A (ENSANAG00000020615) #23	BAG5 (ENSANAG00000035539)	COA8 (ENSANAG00000020280)	ENSANAG00000028747 #25	XRCC3 (ENSANAG00000028646) #26	ZFYVE21 (ENSANAG00000027320) #27	PPP1R13B (ENSANAG00000028500) #28	ENSANAG00000019756	RD3L (ENSANAG00000026776) #30	TDRD9 (ENSANAG00000020949) #31	ASPG (ENSANAG00000025896) #32	KIF26A (ENSANAG00000036661)	C14orf180 (ENSANAG00000027878)
Strepsirrhini	DUPLICATION
Strepsirrhini	DUPLICATION
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000154862.j.a #22
Bushbaby	MODERN SPECIES	121	ENSOGAG00000004525	TPD52L3 (ENSOGAG00000011718)	UHRF2 (ENSOGAG00000010598)	GLDC (ENSOGAG00000026078)	APEX2 (ENSOGAG00000007797)	KDM4C (ENSOGAG00000009288)	PTPRD (ENSOGAG00000007930)	TYRP1 (ENSOGAG00000013041)	LURAP1L (ENSOGAG00000030142)	MPDZ (ENSOGAG00000006106)	NFIB (ENSOGAG00000016282)	ZDHHC21 (ENSOGAG00000011869)	CER1 (ENSOGAG00000011870)	FREM1 (ENSOGAG00000011871)	TTC39B (ENSOGAG00000011887)	ENSOGAG00000028248 #22	SNAPC3 (ENSOGAG00000002175)	PSIP1 (ENSOGAG00000002179)	CCDC171 (ENSOGAG00000002180)	BNC2 (ENSOGAG00000001628)	ENSOGAG00000032938	CNTLN (ENSOGAG00000013973)	SH3GL2 (ENSOGAG00000013983)	ENSOGAG00000016595	ENSOGAG00000016604	SAXO1 (ENSOGAG00000006354)	HAUS6 (ENSOGAG00000006361)	PLIN2 (ENSOGAG00000006364)	ENSOGAG00000026475	ENSOGAG00000033404	ENSOGAG00000016242
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862.j.b #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Bushbaby	MODERN SPECIES	264	DYNC1H1 (ENSOGAG00000006276)	WDR20 (ENSOGAG00000013693) #9	MOK (ENSOGAG00000028062) #10	ZNF839 (ENSOGAG00000027947) #11	CINP (ENSOGAG00000009451) #12	TECPR2 (ENSOGAG00000009454) #14	ANKRD9 (ENSOGAG00000009465)	RCOR1 (ENSOGAG00000007780) #13	TRAF3 (ENSOGAG00000002459) #15	AMN (ENSOGAG00000029773)	CDC42BPB (ENSOGAG00000002461) #16	EXOC3L4 (ENSOGAG00000034162) #18	TNFAIP2 (ENSOGAG00000034813) #19	ENSOGAG00000030713	EIF5 (ENSOGAG00000027506) #20	MARK3 (ENSOGAG00000008270) #22	DUSP22 (ENSOGAG00000014570)	IRF4 (ENSOGAG00000014574)	EXOC2 (ENSOGAG00000014576)	HUS1B (ENSOGAG00000033982)	ENSOGAG00000033477	FOXF2 (ENSOGAG00000005954)	GMDS (ENSOGAG00000005955)	ENSOGAG00000030583	MYLK4 (ENSOGAG00000009407)	WRNIP1 (ENSOGAG00000034332)	ENSOGAG00000032202	ENSOGAG00000009416
Lemuriformes	ANCESTRAL SPECIES	40	ENSGT01020000230401.a.a.b.b.s.b ##7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862.j.b #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Mouse lemur	MODERN SPECIES	22	WDR20 (ENSMICG00000004534) #9	MOK (ENSMICG00000004537) #10	ZNF839 (ENSMICG00000006615) #11	CINP (ENSMICG00000006619) #12	TECPR2 (ENSMICG00000006623) #14	RCOR1 (ENSMICG00000000496) #13	TRAF3 (ENSMICG00000011793) #15	AMN (ENSMICG00000027178)	CDC42BPB (ENSMICG00000013226) #16	LBHD2 (ENSMICG00000032097) #17	EXOC3L4 (ENSMICG00000009101) #18	TNFAIP2 (ENSMICG00000009107) #19	ENSMICG00000037528	EIF5 (ENSMICG00000010046) #20	ENSMICG00000037601 #22	MARK3 (ENSMICG00000009748) #22	CKB (ENSMICG00000009774) #24	TRMT61A (ENSMICG00000047207) #23	COA8 (ENSMICG00000042844)	ENSMICG00000029228	KLC1 (ENSMICG00000014896) #25	XRCC3 (ENSMICG00000014917) #26	ZFYVE21 (ENSMICG00000014930) #27	PPP1R13B (ENSMICG00000014947) #28	ATP5MJ (ENSMICG00000047123) #29	TDRD9 (ENSMICG00000000428) #31	RD3L (ENSMICG00000043039) #30	ASPG (ENSMICG00000013859) #32	KIF26A (ENSMICG00000028277)	ENSMICG00000042488	TMEM179 (ENSMICG00000029522)
Lemuriformes_a	ANCESTRAL SPECIES	37	ENSGT01020000230401.a.a.b.b.t.db.a.a #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478.i.a #20	ENSGT00940000154862.j.b #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Coquerels sifaka	MODERN SPECIES	365	DYNC1H1 (ENSPCOG00000016769)	ENSPCOG00000028160 #7	WDR20 (ENSPCOG00000027238) #9	MOK (ENSPCOG00000015214) #10	ENSPCOG00000005396	ZNF839 (ENSPCOG00000021768) #11	TECPR2 (ENSPCOG00000020207) #14	RCOR1 (ENSPCOG00000020275) #13	TRAF3 (ENSPCOG00000014996) #15	AMN (ENSPCOG00000016828)	CDC42BPB (ENSPCOG00000025121) #16	LBHD2 (ENSPCOG00000014760) #17	EXOC3L4 (ENSPCOG00000019423) #18	TNFAIP2 (ENSPCOG00000024298) #19	EIF5 (ENSPCOG00000018505) #20	MARK3 (ENSPCOG00000023823) #22	CKB (ENSPCOG00000014151) #24	TRMT61A (ENSPCOG00000028487) #23	BAG5 (ENSPCOG00000025264)	COA8 (ENSPCOG00000023191)	KLC1 (ENSPCOG00000013111) #25	XRCC3 (ENSPCOG00000012925) #26	ZFYVE21 (ENSPCOG00000013598) #27	PPP1R13B (ENSPCOG00000013777) #28	RD3L (ENSPCOG00000017543) #30	TDRD9 (ENSPCOG00000015323) #31	ASPG (ENSPCOG00000011247) #32	KIF26A (ENSPCOG00000024515)	C14orf180 (ENSPCOG00000021157)	TMEM179 (ENSPCOG00000021398)	INF2 (ENSPCOG00000009607)
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	754															ENSPSMG00000008906 #22	ENSPSMG00000008895 #22	ENSPSMG00000008893	CKB (ENSPSMG00000008887) #24	TRMT61A (ENSPSMG00000008869) #23	BAG5 (ENSPSMG00000008861)	COA8 (ENSPSMG00000008856)	KLC1 (ENSPSMG00000008791) #25	XRCC3 (ENSPSMG00000008503) #26	ZFYVE21 (ENSPSMG00000008479) #27	PPP1R13B (ENSPSMG00000008404) #28
Greater bamboo lemur	MODERN SPECIES	754																ENSPSMG00000008906 #22	ENSPSMG00000008895 #22	ENSPSMG00000008893	CKB (ENSPSMG00000008887) #24	TRMT61A (ENSPSMG00000008869) #23	BAG5 (ENSPSMG00000008861)	COA8 (ENSPSMG00000008856)	KLC1 (ENSPSMG00000008791) #25	XRCC3 (ENSPSMG00000008503) #26	ZFYVE21 (ENSPSMG00000008479) #27	PPP1R13B (ENSPSMG00000008404) #28
Greater bamboo lemur	MODERN SPECIES	1329																ENSPSMG00000008517 #22
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000154862.k #22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00940000154862.k #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00940000154862.k #22
Greater bamboo lemur	MODERN SPECIES	228												ENSPSMG00000025733	PRKCH (ENSPSMG00000025735)	TMEM30B (ENSPSMG00000025736)	SLC38A6 (ENSPSMG00000025739)	ENSPSMG00000025740 #22	TRMT5 (ENSPSMG00000025741)	MNAT1 (ENSPSMG00000025744)	ENSPSMG00000025745	SIX4 (ENSPSMG00000025746)	SIX1 (ENSPSMG00000025749)	SIX6 (ENSPSMG00000025751)	C14orf39 (ENSPSMG00000025754)	PPM1A (ENSPSMG00000025758)	DHRS7 (ENSPSMG00000025761)	PCNX4 (ENSPSMG00000025766)	LRRC9 (ENSPSMG00000025773)	RTN1 (ENSPSMG00000025787)	CCDC175 (ENSPSMG00000025792)	JKAMP (ENSPSMG00000025795)	L3HYPDH (ENSPSMG00000025797)
Mouse lemur	MODERN SPECIES	22	ENSMICG00000042488	KIF26A (ENSMICG00000028277)	ASPG (ENSMICG00000013859) #32	RD3L (ENSMICG00000043039) #30	TDRD9 (ENSMICG00000000428) #31	ATP5MJ (ENSMICG00000047123) #29	PPP1R13B (ENSMICG00000014947) #28	ZFYVE21 (ENSMICG00000014930) #27	XRCC3 (ENSMICG00000014917) #26	KLC1 (ENSMICG00000014896) #25	ENSMICG00000029228	COA8 (ENSMICG00000042844)	TRMT61A (ENSMICG00000047207) #23	CKB (ENSMICG00000009774) #24	MARK3 (ENSMICG00000009748) #22	ENSMICG00000037601 #22	EIF5 (ENSMICG00000010046) #20	ENSMICG00000037528	TNFAIP2 (ENSMICG00000009107) #19	EXOC3L4 (ENSMICG00000009101) #18	LBHD2 (ENSMICG00000032097) #17	CDC42BPB (ENSMICG00000013226) #16	AMN (ENSMICG00000027178)	TRAF3 (ENSMICG00000011793) #15	RCOR1 (ENSMICG00000000496) #13	TECPR2 (ENSMICG00000006623) #14	CINP (ENSMICG00000006619) #12	ZNF839 (ENSMICG00000006615) #11	MOK (ENSMICG00000004537) #10	WDR20 (ENSMICG00000004534) #9	HSP90AA1 (ENSMICG00000004521) ##7
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154862 #22
Hedgehog	MODERN SPECIES	7711																MARK3 (ENSEEUG00000004308) #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	5254																ENSSARG00000012708 #22
Common shrew	MODERN SPECIES	5777																ENSSARG00000006925 #22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Carnivora	ANCESTRAL SPECIES		ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.a.a #29	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00940000154259.l.q.a.a	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.a.a #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00940000154259.l.q.a.a	ENSGT00390000016478.i.a #20	ENSGT00390000006113.t	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.a.a #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00940000154259.l.q.a.a	ENSGT00390000016478.i.a #20	ENSGT00390000006113.t	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.a.a #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
leopard	MODERN SPECIES	162													ENSPPRG00000001183	EIF5 (ENSPPRG00000000987) #20	ENSPPRG00000015728	MARK3 (ENSPPRG00000021469) #22	CKB (ENSPPRG00000010140) #24	TRMT61A (ENSPPRG00000009410) #23	BAG5 (ENSPPRG00000015369)	ENSPPRG00000009346	KLC1 (ENSPPRG00000007813) #25	XRCC3 (ENSPPRG00000024187) #26	ZFYVE21 (ENSPPRG00000024411) #27	PPP1R13B (ENSPPRG00000024524) #28	ATP5MJ (ENSPPRG00000024632) #29	TDRD9 (ENSPPRG00000021286) #31	RD3L (ENSPPRG00000018965) #30	ASPG (ENSPPRG00000017404) #32	KIF26A (ENSPPRG00000014773)	ENSPPRG00000011765	TMEM179 (ENSPPRG00000011611)
lion	MODERN SPECIES	6	TECPR2 (ENSPLOG00000010430) #14	ANKRD9 (ENSPLOG00000010606)	RCOR1 (ENSPLOG00000010640) #13	TRAF3 (ENSPLOG00000010717) #15	AMN (ENSPLOG00000010781)	ENSPLOG00000010859	CDC42BPB (ENSPLOG00000005343) #16	LBHD2 (ENSPLOG00000005383) #17	EXOC3L4 (ENSPLOG00000005398) #18	TNFAIP2 (ENSPLOG00000005453) #19	ENSPLOG00000005470	ENSPLOG00000005488	EIF5 (ENSPLOG00000005586) #20	ENSPLOG00000005614	ENSPLOG00000005629	MARK3 (ENSPLOG00000005746) #22	CKB (ENSPLOG00000006084) #24	TRMT61A (ENSPLOG00000006104) #23	BAG5 (ENSPLOG00000006121)	COA8 (ENSPLOG00000006136)	KLC1 (ENSPLOG00000006195) #25	XRCC3 (ENSPLOG00000006278) #26	ZFYVE21 (ENSPLOG00000006306) #27	PPP1R13B (ENSPLOG00000006341) #28	ENSPLOG00000006405 #29	TDRD9 (ENSPLOG00000006449) #31	RD3L (ENSPLOG00000006561) #30	ASPG (ENSPLOG00000006591) #32	KIF26A (ENSPLOG00000006651)	ENSPLOG00000006691	TMEM179 (ENSPLOG00000006708)
Tiger	MODERN SPECIES	490	HSP90AA1 (ENSPTIG00000010091) #7	ENSPTIG00000009917 #9	MOK (ENSPTIG00000008365) #10	ENSPTIG00000007428 #11	CINP (ENSPTIG00000006788) #12	ENSPTIG00000005992 #14	ENSPTIG00000005734 #14	RCOR1 (ENSPTIG00000004161) #13	TRAF3 (ENSPTIG00000020503) #15	ENSPTIG00000020371	LBHD2 (ENSPTIG00000018933) #17	EXOC3L4 (ENSPTIG00000017928) #18	TNFAIP2 (ENSPTIG00000017712) #19	EIF5 (ENSPTIG00000017471) #20	ENSPTIG00000005685	MARK3 (ENSPTIG00000013919) #22	CKB (ENSPTIG00000012834) #24	TRMT61A (ENSPTIG00000012664) #23	ENSPTIG00000012187	KLC1 (ENSPTIG00000021796) #25	XRCC3 (ENSPTIG00000021183) #26	ZFYVE21 (ENSPTIG00000020854) #27	PPP1R13B (ENSPTIG00000019969) #28	ATP5MJ (ENSPTIG00000019687) #29	RD3L (ENSPTIG00000019597) #30	TDRD9 (ENSPTIG00000017411) #31	ASPG (ENSPTIG00000016326) #32	ADSS1 (ENSPTIG00000015676)	SIVA1 (ENSPTIG00000015456)	ENSPTIG00000015395	ENSPTIG00000014779
Cat	MODERN SPECIES	237	MOK (ENSFCAG00000000816) #10	ZNF839 (ENSFCAG00000023382) #11	CINP (ENSFCAG00000001765) #12	TECPR2 (ENSFCAG00000004651) #14	ANKRD9 (ENSFCAG00000045318)	RCOR1 (ENSFCAG00000010430) #13	TRAF3 (ENSFCAG00000010003) #15	ENSFCAG00000043416	CDC42BPB (ENSFCAG00000010004) #16	LBHD2 (ENSFCAG00000033577) #17	EXOC3L4 (ENSFCAG00000010009) #18	TNFAIP2 (ENSFCAG00000002239) #19	ENSFCAG00000047159	ENSFCAG00000050434	EIF5 (ENSFCAG00000026424) #20	MARK3 (ENSFCAG00000007949) #22	CKB (ENSFCAG00000007951) #24	TRMT61A (ENSFCAG00000030816) #23	BAG5 (ENSFCAG00000029879)	COA8 (ENSFCAG00000027939)	KLC1 (ENSFCAG00000014599) #25	XRCC3 (ENSFCAG00000022404) #26	ZFYVE21 (ENSFCAG00000021907) #27	PPP1R13B (ENSFCAG00000014601) #28	ENSFCAG00000045017 #29	TDRD9 (ENSFCAG00000013807) #31	RD3L (ENSFCAG00000044473) #30	ASPG (ENSFCAG00000024828) #32	KIF26A (ENSFCAG00000028169)	ENSFCAG00000051790	CB3H14orf180 (ENSFCAG00000028425)
Caniformia	ANCESTRAL SPECIES	15	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Canidae	ANCESTRAL SPECIES	4	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b.m #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00950000182772.A.a.b.n.a #24	ENSGT00900000143542	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b.m #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Dingo	MODERN SPECIES	161	ENSCAFG00020009081 #10	ZNF839 (ENSCAFG00020009076) #11	CINP (ENSCAFG00020009073) #12	TECPR2 (ENSCAFG00020009071) #14	ANKRD9 (ENSCAFG00020009068)	RCOR1 (ENSCAFG00020008964) #13	TRAF3 (ENSCAFG00020008921) #15	AMN (ENSCAFG00020008904)	CDC42BPB (ENSCAFG00020008877) #16	ENSCAFG00020008868 ##16	ENSCAFG00020008844	EXOC3L4 (ENSCAFG00020008816) #18	TNFAIP2 (ENSCAFG00020008776) #19	ENSCAFG00020008767	EIF5 (ENSCAFG00020008755) #20	MARK3 (ENSCAFG00020008747) #22	ENSCAFG00020008724 #24	TRMT61A (ENSCAFG00020008720) #23	BAG5 (ENSCAFG00020008719)	COA8 (ENSCAFG00020008714)	XRCC3 (ENSCAFG00020008703) #26	ZFYVE21 (ENSCAFG00020008695) #27	PPP1R13B (ENSCAFG00020008687) #28	ATP5MJ (ENSCAFG00020008682) #29	RD3L (ENSCAFG00020008680) #30	TDRD9 (ENSCAFG00020008631) #31	ASPG (ENSCAFG00020008565) #32	KIF26A (ENSCAFG00020008539)	ENSCAFG00020008518	TMEM179 (ENSCAFG00020008514)	ENSCAFG00020008299
Dog	MODERN SPECIES	36	MOK (ENSCAFG00845005653) #10	ZNF839 (ENSCAFG00845005744) #11	CINP (ENSCAFG00845015873) #12	TECPR2 (ENSCAFG00845016041) #14	ANKRD9 (ENSCAFG00845016509)	RCOR1 (ENSCAFG00845016544) #13	TRAF3 (ENSCAFG00845016806) #15	AMN (ENSCAFG00845017022)	CDC42BPB (ENSCAFG00845017189) #16	ENSCAFG00845017642 #24	ENSCAFG00845017673 #17	EXOC3L4 (ENSCAFG00845017731) #18	TNFAIP2 (ENSCAFG00845017908) #19	ENSCAFG00845017991	EIF5 (ENSCAFG00845018209) #20	MARK3 (ENSCAFG00845018426) #22	ENSCAFG00845018958 #24	TRMT61A (ENSCAFG00845019044) #23	BAG5 (ENSCAFG00845019070)	COA8 (ENSCAFG00845019102)	KLC1 (ENSCAFG00845019294) #25	XRCC3 (ENSCAFG00845019939) #26	ZFYVE21 (ENSCAFG00845019992) #27	PPP1R13B (ENSCAFG00845020095) #28	ATP5MJ (ENSCAFG00845020355) #29	TDRD9 (ENSCAFG00845020420) #31	RD3L (ENSCAFG00845020748) #30	ENSCAFG00845020802 #32	KIF26A (ENSCAFG00845021077)	C8H14orf180 (ENSCAFG00845021444)	TMEM179 (ENSCAFG00845021480)
Red fox	MODERN SPECIES	93	ENSVVUG00000028627	ENSVVUG00000028638	HSP90AA1 (ENSVVUG00000028646) ##7	WDR20 (ENSVVUG00000028838) #9	MOK (ENSVVUG00000028839) #10	CINP (ENSVVUG00000028840) #12	TECPR2 (ENSVVUG00000028842) #14	RCOR1 (ENSVVUG00000028847) #13	TRAF3 (ENSVVUG00000000150) #15	CDC42BPB (ENSVVUG00000000207) #16	LBHD2 (ENSVVUG00000000262) #17	EXOC3L4 (ENSVVUG00000000278) #18	TNFAIP2 (ENSVVUG00000000417) #19	ENSVVUG00000000435	EIF5 (ENSVVUG00000000498) #20	MARK3 (ENSVVUG00000000529) #22	CKB (ENSVVUG00000000586) #24	TRMT61A (ENSVVUG00000000754) #23	BAG5 (ENSVVUG00000000764)	COA8 (ENSVVUG00000000768)	KLC1 (ENSVVUG00000000793) #25	ENSVVUG00000000890	XRCC3 (ENSVVUG00000000935) #26	ZFYVE21 (ENSVVUG00000001046) #27	PPP1R13B (ENSVVUG00000001129) #28	RD3L (ENSVVUG00000002573) #30	TDRD9 (ENSVVUG00000002584) #31	ASPG (ENSVVUG00000002615) #32	KIF26A (ENSVVUG00000002653)	ENSVVUG00000002734	TMEM179 (ENSVVUG00000002741)
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.d #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Mustelinae	ANCESTRAL SPECIES	37	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.d #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
American mink	MODERN SPECIES	238	ENSNVIG00000009757 ##7	WDR20 (ENSNVIG00000009765) #9	MOK (ENSNVIG00000009797) #10	ENSNVIG00000009823 #11	CINP (ENSNVIG00000009847) #12	TECPR2 (ENSNVIG00000009884) #14	ANKRD9 (ENSNVIG00000009948)	RCOR1 (ENSNVIG00000009957) #13	TRAF3 (ENSNVIG00000009988) #15	CDC42BPB (ENSNVIG00000010257) #16	LBHD2 (ENSNVIG00000012707) #17	EXOC3L4 (ENSNVIG00000012718) #18	TNFAIP2 (ENSNVIG00000012816) #19	ENSNVIG00000012876	EIF5 (ENSNVIG00000012893) #20	MARK3 (ENSNVIG00000012924) #22	CKB (ENSNVIG00000013050) #24	ENSNVIG00000013077	TRMT61A (ENSNVIG00000013085) #23	BAG5 (ENSNVIG00000013106)	COA8 (ENSNVIG00000013115)	KLC1 (ENSNVIG00000013150) #25	XRCC3 (ENSNVIG00000013410) #26	ZFYVE21 (ENSNVIG00000013427) #27	PPP1R13B (ENSNVIG00000013457) #28	ENSNVIG00000013494 #29	RD3L (ENSNVIG00000013504) #30	TDRD9 (ENSNVIG00000013511) #31	ASPG (ENSNVIG00000013540) #32
Ferret	MODERN SPECIES	208	WDR20 (ENSMPUG00000002768) #9	MOK (ENSMPUG00000002728) #10	ENSMPUG00000002705 #11	CINP (ENSMPUG00000002697) #12	TECPR2 (ENSMPUG00000002682) #14	RCOR1 (ENSMPUG00000002641) #13	ENSMPUG00000002637	TRAF3 (ENSMPUG00000002628) #15	ENSMPUG00000002603	CDC42BPB (ENSMPUG00000002385) #16	EXOC3L4 (ENSMPUG00000002379) #18	TNFAIP2 (ENSMPUG00000002374) #19	ENSMPUG00000019166	ENSMPUG00000002372	EIF5 (ENSMPUG00000002368) #20	MARK3 (ENSMPUG00000002365) #22	CKB (ENSMPUG00000002360) #24	TRMT61A (ENSMPUG00000002358) #23	BAG5 (ENSMPUG00000019163)	ENSMPUG00000002350	KLC1 (ENSMPUG00000002343) #25	XRCC3 (ENSMPUG00000002329) #26	ZFYVE21 (ENSMPUG00000002309) #27	PPP1R13B (ENSMPUG00000002303) #28	ATP5MJ (ENSMPUG00000002297) #29	RD3L (ENSMPUG00000002293) #30	TDRD9 (ENSMPUG00000002286) #31	ENSMPUG00000019159	ASPG (ENSMPUG00000002283) #32	KIF26A (ENSMPUG00000002257)	ENSMPUG00000002252
Ursidae	ANCESTRAL SPECIES	10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000168574	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT00900000143542	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Giant Panda	MODERN SPECIES	5	ZNF839 (ENSAMEG00000018218) #11	CINP (ENSAMEG00000018216) #12	TECPR2 (ENSAMEG00000018214) #14	ENSAMEG00000027420	RCOR1 (ENSAMEG00000018211) #13	TRAF3 (ENSAMEG00000018207) #15	AMN (ENSAMEG00000018206)	CDC42BPB (ENSAMEG00000018199) #16	LBHD2 (ENSAMEG00000025365) #17	EXOC3L4 (ENSAMEG00000018195) #18	ENSAMEG00000026787	TNFAIP2 (ENSAMEG00000018186) #19	ENSAMEG00000018185	EIF5 (ENSAMEG00000018173) #20	ENSAMEG00000030930	MARK3 (ENSAMEG00000018163) #22	CKB (ENSAMEG00000027459) #24	ENSAMEG00000026280	TRMT61A (ENSAMEG00000018154) #23	BAG5 (ENSAMEG00000019908)	COA8 (ENSAMEG00000025587)	ENSAMEG00000029613	ENSAMEG00000026620	KLC1 (ENSAMEG00000018143) #25	XRCC3 (ENSAMEG00000018138) #26	ZFYVE21 (ENSAMEG00000018126) #27	PPP1R13B (ENSAMEG00000018115) #28	ATP5MJ (ENSAMEG00000027787) #29	RD3L (ENSAMEG00000030654) #30	TDRD9 (ENSAMEG00000018095) #31	ASPG (ENSAMEG00000018086) #32
Ursus	ANCESTRAL SPECIES	124															ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.d #29	ENSGT00390000016760.c.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
American black bear	MODERN SPECIES	287																MARK3 (ENSUAMG00000012086) #22	CKB (ENSUAMG00000012090) #24	ENSUAMG00000012091	TRMT61A (ENSUAMG00000012092) #23	BAG5 (ENSUAMG00000012094)	COA8 (ENSUAMG00000012095)	KLC1 (ENSUAMG00000012097) #25	XRCC3 (ENSUAMG00000012103) #26	ZFYVE21 (ENSUAMG00000012107) #27	PPP1R13B (ENSUAMG00000012113) #28
Polar bear	MODERN SPECIES	283															EIF5 (ENSUMAG00000024899) #20	MARK3 (ENSUMAG00000024897) #22	ENSUMAG00000024896	TRMT61A (ENSUMAG00000024893) #23	COA8 (ENSUMAG00000024891)	ENSUMAG00000024889	KLC1 (ENSUMAG00000024887) #25	XRCC3 (ENSUMAG00000024886) #26	ENSUMAG00000024885 #27	PPP1R13B (ENSUMAG00000024832) #28	ENSUMAG00000024831 #29	RD3L (ENSUMAG00000024830) #30	TDRD9 (ENSUMAG00000024822) #31	ASPG (ENSUMAG00000024820) #32	ENSUMAG00000024817	ENSUMAG00000024816	INF2 (ENSUMAG00000024814)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000018085.a.a.a.a	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Equus	ANCESTRAL SPECIES	17	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT01050000244818.t.g.b.a	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000018085.a.a.a.a	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Horse	MODERN SPECIES	16	ZNF839 (ENSECAG00000017856) #11	CINP (ENSECAG00000019092) #12	TECPR2 (ENSECAG00000021106) #14	ENSECAG00000006098	RCOR1 (ENSECAG00000012168) #13	ENSECAG00000045340	TRAF3 (ENSECAG00000037175) #15	AMN (ENSECAG00000026806)	CDC42BPB (ENSECAG00000021040) #16	ENSECAG00000039552	EXOC3L4 (ENSECAG00000009801) #18	TNFAIP2 (ENSECAG00000011704) #19	ENSECAG00000037072	EIF5 (ENSECAG00000012597) #20	ENSECAG00000034523	MARK3 (ENSECAG00000016955) #22	CKB (ENSECAG00000009054) #24	TRMT61A (ENSECAG00000012599) #23	BAG5 (ENSECAG00000006244)	ENSECAG00000029582	COA8 (ENSECAG00000013355)	KLC1 (ENSECAG00000014904) #25	XRCC3 (ENSECAG00000009189) #26	ZFYVE21 (ENSECAG00000016309) #27	PPP1R13B (ENSECAG00000017405) #28	ATP5MJ (ENSECAG00000049034) #29	TDRD9 (ENSECAG00000023843) #31	RD3L (ENSECAG00000036061) #30	ENSECAG00000050675	ASPG (ENSECAG00000013195) #32	KIF26A (ENSECAG00000018772)
Donkey	MODERN SPECIES	27	MOK (ENSEASG00005003975) #10	ZNF839 (ENSEASG00005037124) #11	CINP (ENSEASG00005003976) #12	ENSEASG00005029668 #14	ENSEASG00005036749	RCOR1 (ENSEASG00005003999) #13	TRAF3 (ENSEASG00005004011) #15	AMN (ENSEASG00005004014)	CDC42BPB (ENSEASG00005004017) #16	LBHD2 (ENSEASG00005004041) #17	EXOC3L4 (ENSEASG00005004047) #18	TNFAIP2 (ENSEASG00005004057) #19	ENSEASG00005004073	EIF5 (ENSEASG00005004086) #20	ENSEASG00005004096	MARK3 (ENSEASG00005004106) #22	CKB (ENSEASG00005013821) #24	TRMT61A (ENSEASG00005004127) #23	ENSEASG00005004131	BAG5 (ENSEASG00005026372)	COA8 (ENSEASG00005038668)	KLC1 (ENSEASG00005004151) #25	XRCC3 (ENSEASG00005004170) #26	ZFYVE21 (ENSEASG00005004176) #27	PPP1R13B (ENSEASG00005004182) #28	ATP5MJ (ENSEASG00005032475) #29	TDRD9 (ENSEASG00005004203) #31	RD3L (ENSEASG00005034783) #30	ENSEASG00005007833	ASPG (ENSEASG00005004249) #32	KIF26A (ENSEASG00005004267)
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Megabat	MODERN SPECIES	2864																MARK3 (ENSPVAG00000001215) #22	CKB (ENSPVAG00000001216) #24
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.b #29	ENSGT00940000165819	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Microbat	MODERN SPECIES	1713															EIF5 (ENSMLUG00000000882) #20	MARK3 (ENSMLUG00000015922) #22	ENSMLUG00000029605 #24	PPP1R13B (ENSMLUG00000008333) #28
Greater horseshoe bat	MODERN SPECIES	24	MOK (ENSRFEG00010003772) #10	ZNF839 (ENSRFEG00010003743) #11	CINP (ENSRFEG00010003704) #12	TECPR2 (ENSRFEG00010003672) #14	ANKRD9 (ENSRFEG00010003651)	ENSRFEG00010003629	RCOR1 (ENSRFEG00010003600) #13	TRAF3 (ENSRFEG00010003548) #15	AMN (ENSRFEG00010003508)	CDC42BPB (ENSRFEG00010003452) #16	LBHD2 (ENSRFEG00010003420) #17	EXOC3L4 (ENSRFEG00010003373) #18	TNFAIP2 (ENSRFEG00010003320) #19	ENSRFEG00010003301	EIF5 (ENSRFEG00010003270) #20	MARK3 (ENSRFEG00010003085) #22	CKB (ENSRFEG00010002936) #24	TRMT61A (ENSRFEG00010002919) #23	ENSRFEG00010002907	COA8 (ENSRFEG00010002871)	KLC1 (ENSRFEG00010002772) #25	XRCC3 (ENSRFEG00010002686) #26	ZFYVE21 (ENSRFEG00010002643) #27	PPP1R13B (ENSRFEG00010002487) #28	ENSRFEG00010002374 #29	ENSRFEG00010002350	TDRD9 (ENSRFEG00010002295) #31	ASPG (ENSRFEG00010002245) #32	KIF26A (ENSRFEG00010002187)	ENSRFEG00010002091	TMEM179 (ENSRFEG00010002066)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Suina	ANCESTRAL SPECIES	24	ENSGT01020000230401.a.a.b.b.t.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Chacoan peccary	MODERN SPECIES	880														ENSCWAG00000006307	EIF5 (ENSCWAG00000006314) #20	MARK3 (ENSCWAG00000006380) #22	CKB (ENSCWAG00000006618) #24	TRMT61A (ENSCWAG00000006642) #23	BAG5 (ENSCWAG00000006653)	COA8 (ENSCWAG00000006664)	KLC1 (ENSCWAG00000006712) #25	XRCC3 (ENSCWAG00000006808) #26	ZFYVE21 (ENSCWAG00000006849) #27	PPP1R13B (ENSCWAG00000006884) #28	ENSCWAG00000006973 #29	TDRD9 (ENSCWAG00000007001) #31	RD3L (ENSCWAG00000007102) #30	ENSCWAG00000007116	ASPG (ENSCWAG00000007137) #32	KIF26A (ENSCWAG00000007238)
Pig	MODERN SPECIES	162	HSP90AA1 (ENSSSCG00000002535) ##7	WDR20 (ENSSSCG00000002533) #9	MOK (ENSSSCG00000002531) #10	ENSSSCG00000002532 #11	CINP (ENSSSCG00000002530) #12	TECPR2 (ENSSSCG00000002528) #14	ENSSSCG00000039713	RCOR1 (ENSSSCG00000002526) #13	TRAF3 (ENSSSCG00000002525) #15	AMN (ENSSSCG00000002524)	CDC42BPB (ENSSSCG00000002523) #16	EXOC3L4 (ENSSSCG00000036871) #18	TNFAIP2 (ENSSSCG00000036612) #19	ENSSSCG00000036820	EIF5 (ENSSSCG00000034709) #20	MARK3 (ENSSSCG00000021669) #22	CKB (ENSSSCG00000021220) #24	ENSSSCG00000031003	TRMT61A (ENSSSCG00000034738) #23	BAG5 (ENSSSCG00000037197)	COA8 (ENSSSCG00000054301)	KLC1 (ENSSSCG00000002547) #25	ENSSSCG00000063242	XRCC3 (ENSSSCG00000002546) #26	ZFYVE21 (ENSSSCG00000040945) #27	PPP1R13B (ENSSSCG00000002544) #28	ENSSSCG00000045485 #29	TDRD9 (ENSSSCG00000002552) #31	RD3L (ENSSSCG00000060746) #30	ASPG (ENSSSCG00000039553) #32	KIF26A (ENSSSCG00000035093)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Camelidae	ANCESTRAL SPECIES	8	ENSGT01020000230401.a.a.b.b.t.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d
Arabian camel	MODERN SPECIES	32	HSP90AA1 (ENSCDRG00005005574) #7	WDR20 (ENSCDRG00005005620) #9	MOK (ENSCDRG00005005668) #10	ZNF839 (ENSCDRG00005005718) #11	CINP (ENSCDRG00005005759) #12	TECPR2 (ENSCDRG00005005800) #14	RCOR1 (ENSCDRG00005005960) #13	TRAF3 (ENSCDRG00005006052) #15	AMN (ENSCDRG00005006162)	CDC42BPB (ENSCDRG00005006234) #16	LBHD2 (ENSCDRG00005006329) #17	EXOC3L4 (ENSCDRG00005006387) #18	TNFAIP2 (ENSCDRG00005006503) #19	ENSCDRG00005006551	EIF5 (ENSCDRG00005006567) #20	MARK3 (ENSCDRG00005006645) #22	CKB (ENSCDRG00005007042) #24	TRMT61A (ENSCDRG00005007111) #23	BAG5 (ENSCDRG00005007138)	COA8 (ENSCDRG00005007168)	KLC1 (ENSCDRG00005007246) #25	XRCC3 (ENSCDRG00005007547) #26	ZFYVE21 (ENSCDRG00005007593) #27	PPP1R13B (ENSCDRG00005007666) #28	ENSCDRG00005007908 #29	TDRD9 (ENSCDRG00005007986) #31	RD3L (ENSCDRG00005008419) #30	ASPG (ENSCDRG00005008457) #32	KIF26A (ENSCDRG00005008650)	ENSCDRG00005000064	TMEM179 (ENSCDRG00005000074)
Alpaca	MODERN SPECIES	1687													BAG5 (ENSVPAG00000007577)	COA8 (ENSVPAG00000007578)	EIF5 (ENSVPAG00000007579) #20	MARK3 (ENSVPAG00000007580) #22
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000154384.h.a	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000163824	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000163824	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A
Dolphin	MODERN SPECIES	2012																MARK3 (ENSTTRG00000006452) #22	CKB (ENSTTRG00000006455) #24	TRMT61A (ENSTTRG00000006456) #23	BAG5 (ENSTTRG00000006457)	COA8 (ENSTTRG00000006458)	KLC1 (ENSTTRG00000006459) #25	XRCC3 (ENSTTRG00000006460) #26
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000163824	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A
Vaquita	MODERN SPECIES	11	WDR20 (ENSPSNG00000010455) #9	MOK (ENSPSNG00000010592) #10	ZNF839 (ENSPSNG00000010719) #11	CINP (ENSPSNG00000010761) #12	TECPR2 (ENSPSNG00000010841) #14	ANKRD9 (ENSPSNG00000010929)	RCOR1 (ENSPSNG00000010958) #13	TRAF3 (ENSPSNG00000011207) #15	AMN (ENSPSNG00000011318)	CDC42BPB (ENSPSNG00000011659) #16	LBHD2 (ENSPSNG00000011857) #17	EXOC3L4 (ENSPSNG00000011928) #18	TNFAIP2 (ENSPSNG00000012073) #19	ENSPSNG00000012141	ENSPSNG00000012168 #20	MARK3 (ENSPSNG00000012281) #22	CKB (ENSPSNG00000012548) #24	ENSPSNG00000012596	TRMT61A (ENSPSNG00000012637) #23	BAG5 (ENSPSNG00000012676)	COA8 (ENSPSNG00000012697)	ENSPSNG00000012724	KLC1 (ENSPSNG00000012826) #25	XRCC3 (ENSPSNG00000013033) #26	ENSPSNG00000013100 #27	PPP1R13B (ENSPSNG00000013178) #28	ENSPSNG00000013455 #29	TDRD9 (ENSPSNG00000013566) #31	RD3L (ENSPSNG00000014337) #30	ASPG (ENSPSNG00000014407) #32	KIF26A (ENSPSNG00000014965)
Monodontidae	ANCESTRAL SPECIES	26	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00940000163824	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT01030000235753	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT01010000228353
Narwhal	MODERN SPECIES	308	MOK (ENSMMNG00015013511) #10	ZNF839 (ENSMMNG00015013570) #11	CINP (ENSMMNG00015013590) #12	TECPR2 (ENSMMNG00015013625) #14	ENSMMNG00015013666	ANKRD9 (ENSMMNG00015013682)	RCOR1 (ENSMMNG00015013705) #13	TRAF3 (ENSMMNG00015013763) #15	AMN (ENSMMNG00015013798)	CDC42BPB (ENSMMNG00015013841) #16	LBHD2 (ENSMMNG00015013874) #17	EXOC3L4 (ENSMMNG00015013889) #18	TNFAIP2 (ENSMMNG00015013920) #19	ENSMMNG00015013933	ENSMMNG00015013949 #20	MARK3 (ENSMMNG00015014017) #22	ENSMMNG00015014099	CKB (ENSMMNG00015014110) #24	TRMT61A (ENSMMNG00015014129) #23	BAG5 (ENSMMNG00015014139)	COA8 (ENSMMNG00015014143)	KLC1 (ENSMMNG00015014208) #25	XRCC3 (ENSMMNG00015014266) #26	ZFYVE21 (ENSMMNG00015014286) #27	PPP1R13B (ENSMMNG00015014332) #28	ENSMMNG00015014390 #29	TDRD9 (ENSMMNG00015014417) #31	RD3L (ENSMMNG00015014464) #30	ASPG (ENSMMNG00015014499) #32	KIF26A (ENSMMNG00015014549)	ENSMMNG00015014577
Beluga whale	MODERN SPECIES	24	WDR20 (ENSDLEG00000001667) #9	MOK (ENSDLEG00000001645) #10	ZNF839 (ENSDLEG00000001625) #11	CINP (ENSDLEG00000001608) #12	ENSDLEG00000001591	TECPR2 (ENSDLEG00000001533) #14	ANKRD9 (ENSDLEG00000001519)	RCOR1 (ENSDLEG00000001485) #13	TRAF3 (ENSDLEG00000001452) #15	AMN (ENSDLEG00000001433)	CDC42BPB (ENSDLEG00000001399) #16	EXOC3L4 (ENSDLEG00000001375) #18	TNFAIP2 (ENSDLEG00000001359) #19	ENSDLEG00000001352	EIF5 (ENSDLEG00000001302) #20	MARK3 (ENSDLEG00000001258) #22	CKB (ENSDLEG00000001218) #24	TRMT61A (ENSDLEG00000001196) #23	BAG5 (ENSDLEG00000001182)	COA8 (ENSDLEG00000001165)	KLC1 (ENSDLEG00000001054) #25	XRCC3 (ENSDLEG00000000989) #26	ZFYVE21 (ENSDLEG00000000949) #27	PPP1R13B (ENSDLEG00000000743) #28	RD3L (ENSDLEG00000000672) #30	TDRD9 (ENSDLEG00000000618) #31	ASPG (ENSDLEG00000000515) #32	KIF26A (ENSDLEG00000000396)	ENSDLEG00000000348	ENSDLEG00000000335	TMEM179 (ENSDLEG00000000320)
Sperm whale	MODERN SPECIES	2	ENSPCTG00005004090	ENSPCTG00005004094 #10	DYNC1H1 (ENSPCTG00005004117)	ENSPCTG00005004207	CINP (ENSPCTG00005004231) #12	TECPR2 (ENSPCTG00005004290) #14	ENSPCTG00005004397	ANKRD9 (ENSPCTG00005004420)	RCOR1 (ENSPCTG00005004435) #13	TRAF3 (ENSPCTG00005004489) #15	AMN (ENSPCTG00005004683)	CDC42BPB (ENSPCTG00005004748) #16	EXOC3L4 (ENSPCTG00005005116) #18	TNFAIP2 (ENSPCTG00005005189) #19	EIF5 (ENSPCTG00005005244) #20	MARK3 (ENSPCTG00005005307) #22	CKB (ENSPCTG00005005518) #24	TRMT61A (ENSPCTG00005005546) #23	BAG5 (ENSPCTG00005005570)	COA8 (ENSPCTG00005005582)	KLC1 (ENSPCTG00005005646) #25	XRCC3 (ENSPCTG00005005844) #26	ZFYVE21 (ENSPCTG00005005897) #27	PPP1R13B (ENSPCTG00005006003) #28	ATP5MPL (ENSPCTG00005006071) #29	TDRD9 (ENSPCTG00005006109) #31	RD3L (ENSPCTG00005006295) #30	ASPG (ENSPCTG00005006345) #32	KIF26A (ENSPCTG00005006474)	C11H14orf180 (ENSPCTG00005006532)	TMEM179 (ENSPCTG00005006558)
Blue whale	MODERN SPECIES	11	MOK (ENSBMSG00010007524) #10	CINP (ENSBMSG00010007610) #12	TECPR2 (ENSBMSG00010007624) #14	ENSBMSG00010007643	ANKRD9 (ENSBMSG00010007653)	RCOR1 (ENSBMSG00010007663) #13	TRAF3 (ENSBMSG00010007683) #15	AMN (ENSBMSG00010007702)	CDC42BPB (ENSBMSG00010008073) #16	ENSBMSG00010009989 #17	EXOC3L4 (ENSBMSG00010009998) #18	TNFAIP2 (ENSBMSG00010010020) #19	ENSBMSG00010010035	ENSBMSG00010010040 #20	ENSBMSG00010010060	MARK3 (ENSBMSG00010010141) #22	CKB (ENSBMSG00010010891) #24	ENSBMSG00010010903	TRMT61A (ENSBMSG00010010915) #23	BAG5 (ENSBMSG00010010931)	COA8 (ENSBMSG00010010944)	KLC1 (ENSBMSG00010010987) #25	XRCC3 (ENSBMSG00010011089) #26	ZFYVE21 (ENSBMSG00010011171) #27	PPP1R13B (ENSBMSG00010011198) #28	TDRD9 (ENSBMSG00010011272) #31	RD3L (ENSBMSG00010011364) #30	ENSBMSG00010011374	ASPG (ENSBMSG00010011404) #32	KIF26A (ENSBMSG00010011458)	ENSBMSG00010011486
Pecora	ANCESTRAL SPECIES	18	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Yarkand deer	MODERN SPECIES	4	TECPR2 (ENSCHYG00000015794) #14	ENSCHYG00000015918	ANKRD9 (ENSCHYG00000015938)	RCOR1 (ENSCHYG00000016056) #13	TRAF3 (ENSCHYG00000016275) #15	ENSCHYG00000004509	CDC42BPB (ENSCHYG00000004562) #16	LBHD2 (ENSCHYG00000004703) #17	EXOC3L4 (ENSCHYG00000004724) #18	TNFAIP2 (ENSCHYG00000004766) #19	ENSCHYG00000004783	ENSCHYG00000004788	ENSCHYG00000004798	ENSCHYG00000004803	EIF5 (ENSCHYG00000004810) #20	MARK3 (ENSCHYG00000004852) #22	ENSCHYG00000005021 #24	ENSCHYG00000005109	TRMT61A (ENSCHYG00000005120) #23	BAG5 (ENSCHYG00000005133)	ENSCHYG00000005153	KLC1 (ENSCHYG00000005243) #25	XRCC3 (ENSCHYG00000005585) #26	ZFYVE21 (ENSCHYG00000005622) #27	PPP1R13B (ENSCHYG00000005719) #28	ATP5MJ (ENSCHYG00000005881) #29	RD3L (ENSCHYG00000005926) #30	TDRD9 (ENSCHYG00000005960) #31	ASPG (ENSCHYG00000006023) #32	KIF26A (ENSCHYG00000006246)	ENSCHYG00000006381
Percora_a	ANCESTRAL SPECIES	20	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Siberian musk deer	MODERN SPECIES	217				ENSMMSG00000009523 #14	ANKRD9 (ENSMMSG00000009547)	RCOR1 (ENSMMSG00000009566) #13	TRAF3 (ENSMMSG00000009622) #15	AMN (ENSMMSG00000009731)	CDC42BPB (ENSMMSG00000009763) #16	LBHD2 (ENSMMSG00000009887) #17	EXOC3L4 (ENSMMSG00000009913) #18	TNFAIP2 (ENSMMSG00000009966) #19	ENSMMSG00000010019	ENSMMSG00000010036	ENSMMSG00000010055 #20	MARK3 (ENSMMSG00000010148) #22	CKB (ENSMMSG00000010378) #24	TRMT61A (ENSMMSG00000010423) #23	BAG5 (ENSMMSG00000010459)	COA8 (ENSMMSG00000010481)	KLC1 (ENSMMSG00000010580) #25	XRCC3 (ENSMMSG00000010698) #26	ZFYVE21 (ENSMMSG00000010743) #27	PPP1R13B (ENSMMSG00000010805) #28	ATP5MJ (ENSMMSG00000010881) #29	RD3L (ENSMMSG00000010920) #30	TDRD9 (ENSMMSG00000010943) #31	ENSMMSG00000010971	KIF26A (ENSMMSG00000011156)	ENSMMSG00000011200	TMEM179 (ENSMMSG00000011218)
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
Caprinae	ANCESTRAL SPECIES	36	ENSGT00390000007686.b.d #9	ENSGT00940000159582.d #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000016760.c.b.a #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Rambouillet Sheep	MODERN SPECIES	9	HSPCA (ENSOARG00020012664) #7	WDR20 (ENSOARG00020012746) #9	MOK (ENSOARG00020012890) #10	CINP (ENSOARG00020013201) #12	TECPR2 (ENSOARG00020013345) #14	ANKRD9 (ENSOARG00020013669)	RCOR1 (ENSOARG00020013701) #13	TRAF3 (ENSOARG00020013868) #15	AMN (ENSOARG00020014007)	CDC42BPB (ENSOARG00020014102) #16	LBHD2 (ENSOARG00020014332) #17	TNFAIP2 (ENSOARG00020014380) #19	ENSOARG00020014751	ENSOARG00020014771	EIF5 (ENSOARG00020014840) #20	MARK3 (ENSOARG00020015010) #22	CKB (ENSOARG00020016713) #24	TRMT61A (ENSOARG00020016758) #23	BAG5 (ENSOARG00020016804)	COA8 (ENSOARG00020016820)	KLC1 (ENSOARG00020016907) #25	ENSOARG00020017370 #26	ZFYVE21 (ENSOARG00020017435) #27	PPP1R13B (ENSOARG00020017481) #28	ENSOARG00020017719 #29	TDRD9 (ENSOARG00020017845) #31	RD3L (ENSOARG00020018479) #30	ASPG (ENSOARG00020018531) #32	KIF26A (ENSOARG00020018926)	TMEM179 (ENSOARG00020019369)	ENSOARG00020019411
Goat	MODERN SPECIES	13	ENSCHIG00000014686 #11	CINP (ENSCHIG00000021794) #12	TECPR2 (ENSCHIG00000015446) #14	ANKRD9 (ENSCHIG00000024878)	RCOR1 (ENSCHIG00000020773) #13	TRAF3 (ENSCHIG00000026463) #15	AMN (ENSCHIG00000008517)	CDC42BPB (ENSCHIG00000025348) #16	LBHD2 (ENSCHIG00000016749) #17	EXOC3L4 (ENSCHIG00000012030) #18	ENSCHIG00000015133 #19	ENSCHIG00000006615 #19	ENSCHIG00000009953	ENSCHIG00000011000	EIF5 (ENSCHIG00000021283) #20	MARK3 (ENSCHIG00000018506) #22	CKB (ENSCHIG00000017850) #24	TRMT61A (ENSCHIG00000021168) #23	BAG5 (ENSCHIG00000011895)	COA8 (ENSCHIG00000024142)	KLC1 (ENSCHIG00000017179) #25	XRCC3 (ENSCHIG00000021019) #26	ZFYVE21 (ENSCHIG00000012789) #27	PPP1R13B (ENSCHIG00000018367) #28	ENSCHIG00000015712 #29	TDRD9 (ENSCHIG00000011541) #31	RD3L (ENSCHIG00000025061) #30	ASPG (ENSCHIG00000025636) #32	ENSCHIG00000026025	TMEM179 (ENSCHIG00000018701)	ENSCHIG00000013979
Bovinae	ANCESTRAL SPECIES	19	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
American bison	MODERN SPECIES	3216	ENSBBBG00000023788	HSP90AA1 (ENSBBBG00000023932) #7	WDR20 (ENSBBBG00000023985) #9	ENSBBBG00000024008	CINP (ENSBBBG00000024144) #12	TECPR2 (ENSBBBG00000006291) #14	ENSBBBG00000024185	RCOR1 (ENSBBBG00000000286) #13	ENSBBBG00000024266	TRAF3 (ENSBBBG00000008712) #15	CDC42BPB (ENSBBBG00000024454) #16	LBHD2 (ENSBBBG00000024466) #17	ENSBBBG00000006381	ENSBBBG00000024496	EIF5 (ENSBBBG00000024526) #20	MARK3 (ENSBBBG00000007721) #22	ENSBBBG00000006806	CKB (ENSBBBG00000024829) #24	TRMT61A (ENSBBBG00000006541) #23	BAG5 (ENSBBBG00000006546)	ENSBBBG00000024856	ENSBBBG00000024861	ENSBBBG00000008050 #26	KLC1 (ENSBBBG00000025259) #25	ENSBBBG00000025291	PPP1R13B (ENSBBBG00000025430) #28	ENSBBBG00000025488 #29	RD3L (ENSBBBG00000011601) #30	TDRD9 (ENSBBBG00000011627) #31	ASPG (ENSBBBG00000011673) #32
Bos	ANCESTRAL SPECIES	18	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.m.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Bos_a	ANCESTRAL SPECIES	10	ENSGT00910000148640	ENSGT00940000159582 #10	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.m.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842
Wild yak	MODERN SPECIES	1592														ENSBMUG00000020589	EIF5 (ENSBMUG00000020600) #20	MARK3 (ENSBMUG00000020761) #22	CKB (ENSBMUG00000020883) #24	ENSBMUG00000020887	TRMT61A (ENSBMUG00000020902) #23	BAG5 (ENSBMUG00000020916)	COA8 (ENSBMUG00000020927)	KLC1 (ENSBMUG00000021318) #25	ENSBMUG00000021631 #26	ENSBMUG00000021691 #26
Domestic yak	MODERN SPECIES	8	ENSBGRG00000015387 #10	CINP (ENSBGRG00000016013) #12	TECPR2 (ENSBGRG00000016292) #14	ANKRD9 (ENSBGRG00000016991)	RCOR1 (ENSBGRG00000017037) #13	ENSBGRG00000017492	ENSBGRG00000017508	TRAF3 (ENSBGRG00000017554) #15	AMN (ENSBGRG00000017746)	LBHD2 (ENSBGRG00000022778) #17	EXOC3L4 (ENSBGRG00000022807) #18	ENSBGRG00000022967 #19	ENSBGRG00000023041 #19	ENSBGRG00000023228	EIF5 (ENSBGRG00000023240) #20	MARK3 (ENSBGRG00000023429) #22	CKB (ENSBGRG00000024311) #24	ENSBGRG00000024357	TRMT61A (ENSBGRG00000024382) #23	BAG5 (ENSBGRG00000003800)	COA8 (ENSBGRG00000003846)	KLC1 (ENSBGRG00000003931) #25	ENSBGRG00000004194 #26	ZFYVE21 (ENSBGRG00000004348) #27	ENSBGRG00000004548 #29	TDRD9 (ENSBGRG00000004595) #31	RD3L (ENSBGRG00000004882) #30	ASPG (ENSBGRG00000004910) #32	KIF26A (ENSBGRG00000004995)	ENSBGRG00000005062	ENSBGRG00000005088
Bos_b	ANCESTRAL SPECIES	18	ENSGT00390000002751 #11	ENSGT00390000015784.g #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00610000087423 #17	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.m.a #19	ENSGT00940000164852	ENSGT00390000016478.i.a #20	ENSGT00950000185142	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000235753	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.c.a.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214
Hybrid Bos Indicus	MODERN SPECIES	13	WDR20 (ENSBIXG00005014995) #9	MOK (ENSBIXG00005002183) #10	ENSBIXG00005014886 #11	ENSBIXG00005002093 #12	TECPR2 (ENSBIXG00005014758) #14	ANKRD9 (ENSBIXG00005014737)	RCOR1 (ENSBIXG00005002063) #13	TRAF3 (ENSBIXG00005014683) #15	AMN (ENSBIXG00005014541)	CDC42BPB (ENSBIXG00005014455) #16	LBHD2 (ENSBIXG00005014064) #17	EXOC3L4 (ENSBIXG00005014043) #18	TNFAIP2 (ENSBIXG00005013949) #19	EIF5 (ENSBIXG00005007534) #20	ENSBIXG00005013727	MARK3 (ENSBIXG00005013647) #22	CKB (ENSBIXG00005013465) #24	ENSBIXG00005013451	TRMT61A (ENSBIXG00005013436) #23	COA8 (ENSBIXG00005013417)	BAG5 (ENSBIXG00005013374)	KLC1 (ENSBIXG00005013345) #25	ENSBIXG00005005839 #26	ZFYVE21 (ENSBIXG00005013238) #27	PPP1R13B (ENSBIXG00005013207) #28	ENSBIXG00005013147 #29	TDRD9 (ENSBIXG00005013101) #31	RD3L (ENSBIXG00005013046) #30	ASPG (ENSBIXG00005013016) #32	KIF26A (ENSBIXG00005012948)	ENSBIXG00005012885
Cow	DUPLICATION
Cow	MODERN SPECIES	6	MYO7A (ENSBTAG00000003955)	CAPN5 (ENSBTAG00000005034)	B3GNT6 (ENSBTAG00000047129)	ENSBTAG00000008557	ENSBTAG00000052260	ACER3 (ENSBTAG00000017218)	TSKU (ENSBTAG00000001537)	ENSBTAG00000051627	LRRC32 (ENSBTAG00000001301)	EMSY (ENSBTAG00000010826)	GVQW3 (ENSBTAG00000052297)	THAP12 (ENSBTAG00000031609)	WNT11 (ENSBTAG00000010820)	UVRAG (ENSBTAG00000016355)	MOGAT2 (ENSBTAG00000037483)	ENSBTAG00000052936 #22	ENSBTAG00000015091	ENSBTAG00000017443	ENSBTAG00000047111	ENSBTAG00000053794	MOGAT2 (ENSBTAG00000049519)	MAP6 (ENSBTAG00000001028)	SERPINH1 (ENSBTAG00000001027)	GDPD5 (ENSBTAG00000031777)	KLHL35 (ENSBTAG00000015087)	RPS3 (ENSBTAG00000005620)	ARRB1 (ENSBTAG00000020485)	TPBGL (ENSBTAG00000019622)	SLCO2B1 (ENSBTAG00000015596)	ENSBTAG00000048088	OR2AT2C (ENSBTAG00000047344)
Cow	MODERN SPECIES	13	CINP (ENSBTAG00000010995) #12	TECPR2 (ENSBTAG00000012143) #14	ANKRD9 (ENSBTAG00000010882)	RCOR1 (ENSBTAG00000002336) #13	ENSBTAG00000046633	TRAF3 (ENSBTAG00000013475) #15	AMN (ENSBTAG00000015750)	CDC42BPB (ENSBTAG00000016456) #16	EXOC3L4 (ENSBTAG00000026893) #18	ENSBTAG00000049333 #19	TNFAIP2 (ENSBTAG00000035995) #19	ENSBTAG00000047319	ENSBTAG00000048602	EIF5 (ENSBTAG00000016282) #20	ENSBTAG00000052838	MARK3 (ENSBTAG00000013410) #22	CKB (ENSBTAG00000035998) #24	ENSBTAG00000050863	TRMT61A (ENSBTAG00000031327) #23	COA8 (ENSBTAG00000021199)	KLC1 (ENSBTAG00000017299) #25	XRCC3 (ENSBTAG00000009966) #26	ZFYVE21 (ENSBTAG00000003556) #27	PPP1R13B (ENSBTAG00000003559) #28	ATP5MJ (ENSBTAG00000026886) #29	TDRD9 (ENSBTAG00000020402) #31	RD3L (ENSBTAG00000046401) #30	ASPG (ENSBTAG00000017194) #32	KIF26A (ENSBTAG00000021904)	C21H14orf180 (ENSBTAG00000022775)	TMEM179 (ENSBTAG00000006673)
Atlantogenata	ANCESTRAL SPECIES	102															ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b
Xenarthra	ANCESTRAL SPECIES	1475															ENSGT00390000016478.i.b ##20	ENSGT00940000154862 #22	ENSGT00940000154239.a #23
Sloth	MODERN SPECIES	7160																MARK3 (ENSCHOG00000005080) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2993																ENSDNOG00000048833 #22	HELT (ENSDNOG00000011225)
Armadillo	MODERN SPECIES	1687														ENSDNOG00000043613	ENSDNOG00000032674 ##20	MARK3 (ENSDNOG00000010988) #22	TRMT61A (ENSDNOG00000035967) #23
Afrotheria	ANCESTRAL SPECIES	129															ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842
Tenrec	MODERN SPECIES	7056																MARK3 (ENSETEG00000008658) #22	CKB (ENSETEG00000008667) #24	TRMT61A (ENSETEG00000008670) #23
Afrotheria_a	ANCESTRAL SPECIES	132															ENSGT00390000016478.i.a #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842
Hyrax	MODERN SPECIES	6709																MARK3 (ENSPCAG00000014177) #22
Elephant	DUPLICATION
Elephant	MODERN SPECIES	270	ENSLAFG00000030557	ENSLAFG00000029142	ENSLAFG00000026056	ENSLAFG00000029358	ENSLAFG00000031637	ENSLAFG00000028764	ENSLAFG00000025860	ENSLAFG00000028379	ENSLAFG00000027590	ENSLAFG00000026005	ENSLAFG00000025813	ENSLAFG00000029250	ENSLAFG00000026701	ENSLAFG00000027481	ENSLAFG00000002220	ENSLAFG00000032506 #22	SLC1A6 (ENSLAFG00000011311)	CCDC105 (ENSLAFG00000000999)	CASP14 (ENSLAFG00000031913)	OR1I1 (ENSLAFG00000032391)	ENSLAFG00000030501	ILVBL (ENSLAFG00000003259)	ENSLAFG00000025846	ENSLAFG00000031179	NOTCH3 (ENSLAFG00000031040)	EPHX3 (ENSLAFG00000000695)	ENSLAFG00000030134	AKAP8 (ENSLAFG00000026120)	AKAP8L (ENSLAFG00000004599)	WIZ (ENSLAFG00000004604)	RASAL3 (ENSLAFG00000020948)
Elephant	MODERN SPECIES	602	ENSLAFG00000032414	DEGS2 (ENSLAFG00000026042)	EVL (ENSLAFG00000003748)	EML1 (ENSLAFG00000004885)	CYP46A1 (ENSLAFG00000000543)	HHIPL1 (ENSLAFG00000013235)	CCNK (ENSLAFG00000027530)	SETD3 (ENSLAFG00000018555)	BCL11B (ENSLAFG00000009254)	VRK1 (ENSLAFG00000008883)	PAPOLA (ENSLAFG00000000946)	AK7 (ENSLAFG00000014643)	GSKIP (ENSLAFG00000014641)	ATG2B (ENSLAFG00000016704)	ENSLAFG00000017777 #20	MARK3 (ENSLAFG00000005376) #22	CKB (ENSLAFG00000031612) #24	TRMT61A (ENSLAFG00000014714) #23	BAG5 (ENSLAFG00000023130)	KLC1 (ENSLAFG00000002499) #25	XRCC3 (ENSLAFG00000010642) #26	ZFYVE21 (ENSLAFG00000012540) #27	PPP1R13B (ENSLAFG00000012542) #28	TDRD9 (ENSLAFG00000007580) #31	ASPG (ENSLAFG00000031455) #32	KIF26A (ENSLAFG00000022951)	ENSLAFG00000026667	TMEM179 (ENSLAFG00000006445)	ENSLAFG00000027091	ADSS1 (ENSLAFG00000013331)	SIVA1 (ENSLAFG00000014514)
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Marsupialia_b	ANCESTRAL SPECIES	21	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Diprotodontia	ANCESTRAL SPECIES	34	ENSGT00940000156103	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760 #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Diprotodontia_a	ANCESTRAL SPECIES	33	ENSGT00940000156103	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784.e #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000016760.b #29	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Common wonbat	MODERN SPECIES	455	DYNC1H1 (ENSVURG00010004165)	ENSVURG00010004274 #7	WDR20 (ENSVURG00010004298) #9	MOK (ENSVURG00010004348) #10	ENSVURG00010004363 #11	ENSVURG00010004374 #12	TECPR2 (ENSVURG00010004386) #14	ANKRD9 (ENSVURG00010004403)	RCOR1 (ENSVURG00010004417) #13	TRAF3 (ENSVURG00010004468) #15	CDC42BPB (ENSVURG00010004507) #16	ENSVURG00010004567	ENSVURG00010004614 #18	ENSVURG00010004651 #19	EIF5 (ENSVURG00010004689) #20	MARK3 (ENSVURG00010004765) #22	CKB (ENSVURG00010004865) #24	ENSVURG00010004878	TRMT61A (ENSVURG00010004892) #23	BAG5 (ENSVURG00010004901)	ENSVURG00010004907	KLC1 (ENSVURG00010004931) #25	XRCC3 (ENSVURG00010005008) #26	ZFYVE21 (ENSVURG00010005038) #27	PPP1R13B (ENSVURG00010005071) #28	ENSVURG00010005115 #29	TDRD9 (ENSVURG00010005150) #31	RD3L (ENSVURG00010005206) #30	ASPG (ENSVURG00010005231) #32	KIF26A (ENSVURG00010005300)	TMEM179 (ENSVURG00010005332)
koala	MODERN SPECIES	213	WDR20 (ENSPCIG00000025180) #9	ENSPCIG00000025178	MOK (ENSPCIG00000025176) #10	ENSPCIG00000015079 #11	ENSPCIG00000015076 #12	TECPR2 (ENSPCIG00000015052) #14	ANKRD9 (ENSPCIG00000015051)	ENSPCIG00000028110	RCOR1 (ENSPCIG00000011375) #13	TRAF3 (ENSPCIG00000026593) #15	CDC42BPB (ENSPCIG00000011362) #16	ENSPCIG00000011346 #18	ENSPCIG00000011331 #19	EIF5 (ENSPCIG00000011319) #20	ENSPCIG00000011312	MARK3 (ENSPCIG00000011285) #22	CKB (ENSPCIG00000011263) #24	TRMT61A (ENSPCIG00000011257) #23	BAG5 (ENSPCIG00000016008)	COA8 (ENSPCIG00000016006)	KLC1 (ENSPCIG00000016002) #25	XRCC3 (ENSPCIG00000015995) #26	ZFYVE21 (ENSPCIG00000015993) #27	PPP1R13B (ENSPCIG00000015919) #28	ATP5MJ (ENSPCIG00000018696) #29	RD3L (ENSPCIG00000026951) #30	TDRD9 (ENSPCIG00000016427) #31	ASPG (ENSPCIG00000020604) #32	KIF26A (ENSPCIG00000004452)
Wallaby	MODERN SPECIES	9602																MARK3 (ENSMEUG00000012866) #22
Tasmanian devil	MODERN SPECIES	1	MOK (ENSSHAG00000002286) #10	ENSSHAG00000007834 #11	CINP (ENSSHAG00000023361) #12	TECPR2 (ENSSHAG00000006435) #14	ANKRD9 (ENSSHAG00000028717)	RCOR1 (ENSSHAG00000005101) #13	TRAF3 (ENSSHAG00000009189) #15	ENSSHAG00000008188	CDC42BPB (ENSSHAG00000006579) #16	ENSSHAG00000022704	ENSSHAG00000028259	ENSSHAG00000001823 #18	ENSSHAG00000029726 #19	ENSSHAG00000001873 #19	EIF5 (ENSSHAG00000017066) #20	MARK3 (ENSSHAG00000016567) #22	ENSSHAG00000016459 #24	TRMT61A (ENSSHAG00000029389) #23	BAG5 (ENSSHAG00000028616)	COA8 (ENSSHAG00000028665)	KLC1 (ENSSHAG00000015545) #25	XRCC3 (ENSSHAG00000015422) #26	ZFYVE21 (ENSSHAG00000015314) #27	PPP1R13B (ENSSHAG00000015159) #28	ATP5MJ (ENSSHAG00000014580) #29	RD3L (ENSSHAG00000014495) #30	TDRD9 (ENSSHAG00000013742) #31	ASPG (ENSSHAG00000012851) #32	KIF26A (ENSSHAG00000011581)	ENSSHAG00000026217	ENSSHAG00000027215
Opossum	MODERN SPECIES		CINP (ENSMODG00000013323) #12	TECPR2 (ENSMODG00000013332) #14	ANKRD9 (ENSMODG00000013335)	RCOR1 (ENSMODG00000013350) #13	ENSMODG00000028617	TRAF3 (ENSMODG00000013357) #15	ENSMODG00000013361	ENSMODG00000049771	CDC42BPB (ENSMODG00000013407) #16	ENSMODG00000041115 ##16	ENSMODG00000046265	ENSMODG00000013417 #18	ENSMODG00000013430 #19	ENSMODG00000041052 #19	EIF5 (ENSMODG00000013424) #20	MARK3 (ENSMODG00000013489) #22	CKB (ENSMODG00000013504) #24	TRMT61A (ENSMODG00000013507) #23	BAG5 (ENSMODG00000023834)	COA8 (ENSMODG00000050823)	ENSMODG00000021463	KLC1 (ENSMODG00000013523) #25	XRCC3 (ENSMODG00000013528) #26	ZFYVE21 (ENSMODG00000013535) #27	PPP1R13B (ENSMODG00000013546) #28	ATP5MJ (ENSMODG00000025740) #29	ENSMODG00000048373	RD3L (ENSMODG00000028050) #30	TDRD9 (ENSMODG00000013609) #31	ASPG (ENSMODG00000013615) #32	ENSMODG00000013636
Platypus	MODERN SPECIES		PPP2R5C (ENSOANG00000005732)	DYNC1H1 (ENSOANG00000005733)	HSP90AA1 (ENSOANG00000005734) #7	ENSOANG00000044415 #9	ENSOANG00000005735 #9	MOK (ENSOANG00000005736) #10	TECPR2 (ENSOANG00000005740) #14	ANKRD9 (ENSOANG00000005741)	RCOR1 (ENSOANG00000013917) #13	TRAF3 (ENSOANG00000014633) #15	ENSOANG00000014635	CDC42BPB (ENSOANG00000014636) #16	ENSOANG00000009546 #19	EIF5 (ENSOANG00000000767) #20	ENSOANG00000042928 #24	MARK3 (ENSOANG00000000773) #22	TRMT61A (ENSOANG00000000785) #23	KLC1 (ENSOANG00000000786) #25	BAG5 (ENSOANG00000000627)	XRCC3 (ENSOANG00000000792) #26	ENSOANG00000049279 #27	PPP1R13B (ENSOANG00000000793) #28	ATP5MPL (ENSOANG00000043647) #29	TDRD9 (ENSOANG00000000797) #31	RD3L (ENSOANG00000000795) #30	KIF26A (ENSOANG00000042686)	ENSOANG00000011958	INF2 (ENSOANG00000001085)	ADSS1 (ENSOANG00000005973)	AKT1 (ENSOANG00000031179)	ENSOANG00000038038
Sauria	ANCESTRAL SPECIES	3	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Lepidosauria	ANCESTRAL SPECIES	27	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.e #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
tuatara	MODERN SPECIES	1558														ENSSPUG00000004130	EIF5 (ENSSPUG00000004139) #20	MARK3 (ENSSPUG00000004212) #22	CKB (ENSSPUG00000004247) #24	TRMT61A (ENSSPUG00000004293) #23	BAG5 (ENSSPUG00000004310)	COA8 (ENSSPUG00000004317)	KLC1 (ENSSPUG00000004341) #25	XRCC3 (ENSSPUG00000004439) #26	ZFYVE21 (ENSSPUG00000004453) #27	PPP1R13B (ENSSPUG00000004468) #28	RD3L (ENSSPUG00000004476) #30	TDRD9 (ENSSPUG00000004504) #31	ASPG (ENSSPUG00000004653) #32	KIF26A (ENSSPUG00000004827)
Episquamata	ANCESTRAL SPECIES		ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01040000244769	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.f #32	ENSGT00390000001610.e #32	ENSGT00940000159075.A
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000156103	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01040000244769	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.f #32	ENSGT00390000001610.e #32	ENSGT00940000159075.A
Common wall lizard	MODERN SPECIES		WDR20 (ENSPMRG00000000487) #9	ENSPMRG00000000390 #9	MOK (ENSPMRG00000000373) #10	ENSPMRG00000000348 #12	TECPR2 (ENSPMRG00000000123) #14	ANKRD9 (ENSPMRG00000000086)	ENSPMRG00000000085	RCOR1 (ENSPMRG00000000084) #13	TRAF3 (ENSPMRG00000000082) #15	ENSPMRG00000000078	ENSPMRG00000000077	CDC42BPB (ENSPMRG00000000071) #16	ENSPMRG00000000065	TNFAIP2 (ENSPMRG00000000063) #19	EIF5 (ENSPMRG00000000059) #20	MARK3 (ENSPMRG00000000055) #22	ENSPMRG00000000052	CKB (ENSPMRG00000000051) #24	TRMT61A (ENSPMRG00000000050) #23	ENSPMRG00000000049	BAG5 (ENSPMRG00000000048)	COA8 (ENSPMRG00000000047)	KLC1 (ENSPMRG00000000046) #25	XRCC3 (ENSPMRG00000006030) #26	ZFYVE21 (ENSPMRG00000006010) #27	PPP1R13B (ENSPMRG00000005835) #28	ENSPMRG00000005774	RD3L (ENSPMRG00000005767) #30	TDRD9 (ENSPMRG00000005698) #31	ASPG (ENSPMRG00000005655) #32	TMEM179 (ENSPMRG00000005643)
Argentine black and white tegu	MODERN SPECIES	35	WDR20 (ENSSMRG00000002574) #9	MOK (ENSSMRG00000002561) #10	CINP (ENSSMRG00000002552) #12	ENSSMRG00000002550	TECPR2 (ENSSMRG00000002541) #14	ANKRD9 (ENSSMRG00000002516)	RCOR1 (ENSSMRG00000002465) #13	TRAF3 (ENSSMRG00000002419) #15	AMN (ENSSMRG00000002387)	CDC42BPB (ENSSMRG00000002349) #16	ENSSMRG00000002316	ENSSMRG00000002299	ENSSMRG00000002295 #18	TNFAIP2 (ENSSMRG00000002264) #19	EIF5 (ENSSMRG00000002253) #20	MARK3 (ENSSMRG00000002223) #22	ENSSMRG00000002221 #24	TRMT61A (ENSSMRG00000002217) #23	BAG5 (ENSSMRG00000002208)	COA8 (ENSSMRG00000002206)	ENSSMRG00000002203	KLC1 (ENSSMRG00000002165) #25	XRCC3 (ENSSMRG00000002153) #26	ZFYVE21 (ENSSMRG00000002143) #27	PPP1R13B (ENSSMRG00000002090) #28	RD3L (ENSSMRG00000002085) #30	TDRD9 (ENSSMRG00000002065) #31	ENSSMRG00000001864 #32	ENSSMRG00000001839 #32	KIF26A (ENSSMRG00000001803)	TMEM179 (ENSSMRG00000001764)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000156103	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01040000244769	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.f #32	ENSGT00390000001610.e #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Lizard	MODERN SPECIES	846	TECPR2 (ENSACAG00000000176) #14	ANKRD9 (ENSACAG00000000180)	RCOR1 (ENSACAG00000000182) #13	ENSACAG00000035613	ENSACAG00000043804	TRAF3 (ENSACAG00000000202) #15	ENSACAG00000043264	AMN (ENSACAG00000000207)	ENSACAG00000043360	CDC42BPB (ENSACAG00000000214) #16	ENSACAG00000038694	ENSACAG00000028260 #18	TNFAIP2 (ENSACAG00000000366) #19	ENSACAG00000000473	EIF5 (ENSACAG00000000485) #20	MARK3 (ENSACAG00000000652) #22	CKB (ENSACAG00000000789) #24	TRMT61A (ENSACAG00000000860) #23
Elapidae	ANCESTRAL SPECIES	3	ENSGT01030000234620.a.a.a.a.a.b.c	ENSGT00940000156103.h	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.e #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00940000163336
Indian cobra	MODERN SPECIES		DYNC1H1 (ENSNNAG00000000675)	ENSNNAG00000001266 ##9	HSP90AA1 (ENSNNAG00000001276) #7	WDR20 (ENSNNAG00000001295) #9	MOK (ENSNNAG00000001306) #10	ENSNNAG00000001317 #11	CINP (ENSNNAG00000001334) #12	TECPR2 (ENSNNAG00000001359) #14	ANKRD9 (ENSNNAG00000001383)	RCOR1 (ENSNNAG00000001407) #13	TRAF3 (ENSNNAG00000001458) #15	CDC42BPB (ENSNNAG00000001542) #16	ENSNNAG00000001571	ENSNNAG00000001613 #19	EIF5 (ENSNNAG00000001684) #20	MARK3 (ENSNNAG00000001732) #22	CKB (ENSNNAG00000001817) #24	TRMT61A (ENSNNAG00000001827) #23	BAG5 (ENSNNAG00000001835)	COA8 (ENSNNAG00000001843)	KLC1 (ENSNNAG00000001861) #25	XRCC3 (ENSNNAG00000001910) #26	ZFYVE21 (ENSNNAG00000001939) #27	PPP1R13B (ENSNNAG00000001963) #28	TDRD9 (ENSNNAG00000002011) #31	RD3L (ENSNNAG00000002097) #30	ASPG (ENSNNAG00000002110) #32	KIF26A (ENSNNAG00000002137)	TMEM179 (ENSNNAG00000002157)	INF2 (ENSNNAG00000002215)	ENSNNAG00000002460
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000154225.b	ENSGT01030000234620.a.a.a.a.a.b.d	ENSGT00940000156103.h	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.e #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00870000136707
Blue-lipped sea krait	MODERN SPECIES	5329																ENSLLTG00000008874 #22	CKB (ENSLLTG00000008892) #24	ENSLLTG00000008907
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000154225.b	ENSGT01030000234620.a.a.a.a.a.b.c	ENSGT00940000156103.h	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.a.o #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610.e #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00870000136707
Eastern brown snake	MODERN SPECIES	10	PPP2R5C (ENSPTXG00000014615)	DYNC1H1 (ENSPTXG00000014617)	HSP90AA1 (ENSPTXG00000014819) #7	ENSPTXG00000014820	WDR20 (ENSPTXG00000014821) #9	MOK (ENSPTXG00000014822) #10	CINP (ENSPTXG00000014823) #12	TECPR2 (ENSPTXG00000014824) #14	ANKRD9 (ENSPTXG00000014826)	RCOR1 (ENSPTXG00000014828) #13	TRAF3 (ENSPTXG00000014831) #15	CDC42BPB (ENSPTXG00000014886) #16	ENSPTXG00000014894	ENSPTXG00000014897 #19	EIF5 (ENSPTXG00000014900) #20	MARK3 (ENSPTXG00000014907) #22	CKB (ENSPTXG00000014912) #24	TRMT61A (ENSPTXG00000014914) #23	BAG5 (ENSPTXG00000014916)	COA8 (ENSPTXG00000014918)	KLC1 (ENSPTXG00000014922) #25	XRCC3 (ENSPTXG00000014928) #26	ZFYVE21 (ENSPTXG00000014932) #27	PPP1R13B (ENSPTXG00000014936) #28	RD3L (ENSPTXG00000014943) #30	TDRD9 (ENSPTXG00000014945) #31	ASPG (ENSPTXG00000014946) #32	KIF26A (ENSPTXG00000014948)	TMEM179 (ENSPTXG00000014949)	INF2 (ENSPTXG00000014950)	ENSPTXG00000014951
Mainland tiger snake	MODERN SPECIES	31																MARK3 (ENSNSUG00000017112) #22	CKB (ENSNSUG00000017135) #24	TRMT61A (ENSNSUG00000017136) #23	BAG5 (ENSNSUG00000017137)	COA8 (ENSNSUG00000017138)	KLC1 (ENSNSUG00000017146) #25	XRCC3 (ENSNSUG00000018256) #26	ZFYVE21 (ENSNSUG00000018257) #27	PPP1R13B (ENSNSUG00000018258) #28	RD3L (ENSNSUG00000018260) #30	TDRD9 (ENSNSUG00000018261) #31	ASPG (ENSNSUG00000018262) #32	KIF26A (ENSNSUG00000018264)	TMEM179 (ENSNSUG00000018265)	INF2 (ENSNSUG00000018266)	ENSNSUG00000018267
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o.f #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Emydidae	ANCESTRAL SPECIES	43	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o.f #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01100000263506.a	ENSGT00940000153118.db.a.a.b.a.a.a.b.a.a	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A
painted turtle	MODERN SPECIES	701	CLBA1 (ENSCPBG00000020388)	ENSCPBG00000020387	CDCA4 (ENSCPBG00000020385)	ENSCPBG00000020384	JAG2 (ENSCPBG00000020376)	ENSCPBG00000020372	NUDT14 (ENSCPBG00000020368)	BTBD6 (ENSCPBG00000020362)	BRF1 (ENSCPBG00000020355)	PPP1R36 (ENSCPBG00000020341)	ENSCPBG00000020336	EXOC3L4 (ENSCPBG00000020331) #18	TNFAIP2 (ENSCPBG00000020328) #19	ENSCPBG00000020327 #19	EIF5 (ENSCPBG00000020321) #20	MARK3 (ENSCPBG00000020304) #22	ENSCPBG00000020294	CKB (ENSCPBG00000020289) #24	TRMT61A (ENSCPBG00000020287) #23	BAG5 (ENSCPBG00000020285)	COA8 (ENSCPBG00000020283)	KLC1 (ENSCPBG00000020262) #25	XRCC3 (ENSCPBG00000020246) #26	ZFYVE21 (ENSCPBG00000020236) #27	PPP1R13B (ENSCPBG00000020221) #28	ENSCPBG00000020209	RD3L (ENSCPBG00000020206) #30	TDRD9 (ENSCPBG00000020203) #31	ASPG (ENSCPBG00000020202) #32	KIF26A (ENSCPBG00000020200)	TMEM179 (ENSCPBG00000020195)
Three-toed box turtle	MODERN SPECIES	87	MOK (ENSTMTG00000016010) #10	ENSTMTG00000016033 #11	ENSTMTG00000016045 #11	CINP (ENSTMTG00000016061) #12	TECPR2 (ENSTMTG00000016089) #14	ANKRD9 (ENSTMTG00000016152)	RCOR1 (ENSTMTG00000016172) #13	TRAF3 (ENSTMTG00000016218) #15	AMN (ENSTMTG00000016350)	CDC42BPB (ENSTMTG00000016376) #16	ENSTMTG00000016459	EXOC3L4 (ENSTMTG00000016474) #18	TNFAIP2 (ENSTMTG00000016496) #19	ENSTMTG00000016536 #19	EIF5 (ENSTMTG00000016550) #20	MARK3 (ENSTMTG00000016575) #22	ENSTMTG00000016649	CKB (ENSTMTG00000016679) #24	TRMT61A (ENSTMTG00000016715) #23	BAG5 (ENSTMTG00000016723)	COA8 (ENSTMTG00000016730)	KLC1 (ENSTMTG00000016744) #25	XRCC3 (ENSTMTG00000016806) #26	ZFYVE21 (ENSTMTG00000016813) #27	PPP1R13B (ENSTMTG00000016842) #28	ENSTMTG00000016912	RD3L (ENSTMTG00000016920) #30	TDRD9 (ENSTMTG00000016940) #31	ASPG (ENSTMTG00000017026) #32	KIF26A (ENSTMTG00000017129)	TMEM179 (ENSTMTG00000017156)
Testudinidae	ANCESTRAL SPECIES	37	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.a.o.e #19	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o.f #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Abingdon island giant tortoise	MODERN SPECIES	2833									TRAF3 (ENSCABG00000016980) #15	AMN (ENSCABG00000017018)	CDC42BPB (ENSCABG00000017229) #16	ENSCABG00000021003	ENSCABG00000021005 #18	TNFAIP2 (ENSCABG00000021007) #19	EIF5 (ENSCABG00000021009) #20	MARK3 (ENSCABG00000021018) #22	ENSCABG00000021022	ENSCABG00000021025	CKB (ENSCABG00000021028) #24	TRMT61A (ENSCABG00000021033) #23	BAG5 (ENSCABG00000021037)	COA8 (ENSCABG00000021038)	KLC1 (ENSCABG00000021157) #25	XRCC3 (ENSCABG00000021985) #26	ZFYVE21 (ENSCABG00000021986) #27	PPP1R13B (ENSCABG00000021988) #28	ENSCABG00000022010	RD3L (ENSCABG00000022011) #30	TDRD9 (ENSCABG00000022014) #31	ASPG (ENSCABG00000022017) #32	KIF26A (ENSCABG00000022021)
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005003198 #7	WDR20 (ENSGEVG00005003190) #9	MOK (ENSGEVG00005003176) #10	ZNF839 (ENSGEVG00005003160) #11	CINP (ENSGEVG00005003155) #12	TECPR2 (ENSGEVG00005003131) #14	ANKRD9 (ENSGEVG00005003116)	RCOR1 (ENSGEVG00005003100) #13	TRAF3 (ENSGEVG00005003080) #15	AMN (ENSGEVG00005003066)	CDC42BPB (ENSGEVG00005003012) #16	ENSGEVG00005002989	ENSGEVG00005002976 #19	ENSGEVG00005002961 #19	EIF5 (ENSGEVG00005002933) #20	MARK3 (ENSGEVG00005002845) #22	ENSGEVG00005002800	CKB (ENSGEVG00005002791) #24	TRMT61A (ENSGEVG00005002782) #23	BAG5 (ENSGEVG00005002774)	COA8 (ENSGEVG00005002759)	KLC1 (ENSGEVG00005002735) #25	XRCC3 (ENSGEVG00005002713) #26	ZFYVE21 (ENSGEVG00005002689) #27	PPP1R13B (ENSGEVG00005002644) #28	ENSGEVG00005002623	RD3L (ENSGEVG00005002616) #30	TDRD9 (ENSGEVG00005002591) #31	ASPG (ENSGEVG00005002564) #32	TMEM179 (ENSGEVG00005002509)	INF2 (ENSGEVG00005002490)
Chinese turtle	MODERN SPECIES	1684																MARK3 (ENSPSIG00000012322) #22	CKB (ENSPSIG00000014479) #24	TRMT61A (ENSPSIG00000015186) #23
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Australian saltwater crocodile	MODERN SPECIES	64	HSP90AA1 (ENSCPRG00005013085) #7	WDR20 (ENSCPRG00005013296) #9	MOK (ENSCPRG00005013302) #10	ZNF839 (ENSCPRG00005013306) #11	CINP (ENSCPRG00005013311) #12	TECPR2 (ENSCPRG00005013314) #14	ANKRD9 (ENSCPRG00005013319)	RCOR1 (ENSCPRG00005013335) #13	TRAF3 (ENSCPRG00005013397) #15	AMN (ENSCPRG00005013401)	CDC42BPB (ENSCPRG00005013613) #16	ENSCPRG00005015787	EXOC3L4 (ENSCPRG00005015790) #18	TNFAIP2 (ENSCPRG00005015793) #19	EIF5 (ENSCPRG00005015803) #20	MARK3 (ENSCPRG00005015816) #22	CKB (ENSCPRG00005015837) #24	TRMT61A (ENSCPRG00005015843) #23	BAG5 (ENSCPRG00005015845)	KLC1 (ENSCPRG00005015847) #25	XRCC3 (ENSCPRG00005015856) #26	ZFYVE21 (ENSCPRG00005015861) #27	PPP1R13B (ENSCPRG00005015869) #28	ENSCPRG00005015875	TDRD9 (ENSCPRG00005015883) #31	RD3L (ENSCPRG00005015908) #30	ASPG (ENSCPRG00005015909) #32	KIF26A (ENSCPRG00005015914)	TMEM179 (ENSCPRG00005015921)	INF2 (ENSCPRG00005015924)	ADSS1 (ENSCPRG00005015931)
Aves	ANCESTRAL SPECIES	2	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
African ostrich	MODERN SPECIES	631	HSP90AA1 (ENSSCUG00000009235) #7	WDR20 (ENSSCUG00000009264) #9	MOK (ENSSCUG00000009265) #10	ZNF839 (ENSSCUG00000009267) #11	CINP (ENSSCUG00000009269) #12	TECPR2 (ENSSCUG00000009270) #14	RCOR1 (ENSSCUG00000009272) #13	TRAF3 (ENSSCUG00000009278) #15	ENSSCUG00000009285	CDC42BPB (ENSSCUG00000009294) #16	ENSSCUG00000009304	EXOC3L4 (ENSSCUG00000009306) #18	TNFAIP2 (ENSSCUG00000009309) #19	ENSSCUG00000009310 #19	EIF5 (ENSSCUG00000009314) #20	MARK3 (ENSSCUG00000009325) #22	CKB (ENSSCUG00000009331) #24	TRMT61A (ENSSCUG00000009332) #23	BAG5 (ENSSCUG00000009333)	KLC1 (ENSSCUG00000009335) #25	COA8 (ENSSCUG00000009337)	XRCC3 (ENSSCUG00000009341) #26	ZFYVE21 (ENSSCUG00000009346) #27	PPP1R13B (ENSSCUG00000009352) #28	ENSSCUG00000009358	RD3L (ENSSCUG00000009360) #30	TDRD9 (ENSSCUG00000009364) #31	ASPG (ENSSCUG00000009367) #32	KIF26A (ENSSCUG00000009371)	ENSSCUG00000009381	TMEM179 (ENSSCUG00000009385)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Anatidae	ANCESTRAL SPECIES	9	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555.m #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00940000171479	ENSGT00510000048283.d
Duck	MODERN SPECIES	23	MOK (ENSAPLG00000013215) #10	ZNF839 (ENSAPLG00000013003) #11	CINP (ENSAPLG00000012968) #12	TECPR2 (ENSAPLG00000012414) #14	ANKRD9 (ENSAPLG00000017806)	RCOR1 (ENSAPLG00000012214) #13	ENSAPLG00000019480	TRAF3 (ENSAPLG00000011933) #15	AMN (ENSAPLG00000011646)	CDC42BPB (ENSAPLG00000010525) #16	ENSAPLG00000010511	ENSAPLG00000027314 #18	TNFAIP2 (ENSAPLG00000012637) #19	ENSAPLG00000015755 #19	EIF5 (ENSAPLG00000015675) #20	MARK3 (ENSAPLG00000010536) #22	ENSAPLG00000010931 #24	TRMT61A (ENSAPLG00000011344) #23	BAG5 (ENSAPLG00000001982)	ENSAPLG00000028568	ENSAPLG00000006410 #25	XRCC3 (ENSAPLG00000006917) #26	ZFYVE21 (ENSAPLG00000007132) #27	PPP1R13B (ENSAPLG00000007222) #28	ENSAPLG00000029834	TDRD9 (ENSAPLG00000007429) #31	RD3L (ENSAPLG00000007355) #30	ASPG (ENSAPLG00000008103) #32	ENSAPLG00000029098	ENSAPLG00000029958	TMEM179 (ENSAPLG00000007213)
Pink-footed goose	MODERN SPECIES	99	MOK (ENSABRG00000011280) #10	ENSABRG00000011291 #12	ENSABRG00000011296 #12	TECPR2 (ENSABRG00000011320) #14	ANKRD9 (ENSABRG00000011496)	RCOR1 (ENSABRG00000011524) #13	TRAF3 (ENSABRG00000011595) #15	AMN (ENSABRG00000011621)	CDC42BPB (ENSABRG00000011640) #16	ENSABRG00000011667	ENSABRG00000011677	EXOC3L4 (ENSABRG00000011682) #18	TNFAIP2 (ENSABRG00000011698) #19	ENSABRG00000011706 #19	EIF5 (ENSABRG00000011716) #20	MARK3 (ENSABRG00000011751) #22	ENSABRG00000011812	CKB (ENSABRG00000011821) #24	TRMT61A (ENSABRG00000011832) #23	BAG5 (ENSABRG00000011837)	COA8 (ENSABRG00000011845)	KLC1 (ENSABRG00000011905) #25	XRCC3 (ENSABRG00000011924) #26	ZFYVE21 (ENSABRG00000011932) #27	PPP1R13B (ENSABRG00000011987) #28	ENSABRG00000012044	TDRD9 (ENSABRG00000012064) #31	RD3L (ENSABRG00000012171) #30	ASPG (ENSABRG00000012178) #32	KIF26A (ENSABRG00000012218)	ENSABRG00000012252
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283.db #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463.i	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283.db #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463.i	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Chicken	MODERN SPECIES	34	WDR20 (ENSGALG00010017133) #9	MOK (ENSGALG00010017148) #10	ZNF839 (ENSGALG00010017187) #11	CINP (ENSGALG00010017208) #12	TECPR2 (ENSGALG00010017248) #14	ANKRD9 (ENSGALG00010017304)	RCOR1 (ENSGALG00010016918) #13	TRAF3 (ENSGALG00010017049) #15	AMN (ENSGALG00010015137)	CDC42BPB (ENSGALG00010015157) #16	ENSGALG00010015643	EXOC3L4 (ENSGALG00010015691) #18	TNFAIP2 (ENSGALG00010015698) #19	ENSGALG00010015706 #19	EIF5 (ENSGALG00010015759) #20	MARK3 (ENSGALG00010015792) #22	CKB (ENSGALG00010015804) #24	TRMT61A (ENSGALG00010015879) #23	BAG5 (ENSGALG00010015906)	COA8 (ENSGALG00010015916)	KLC1 (ENSGALG00010015964) #25	XRCC3 (ENSGALG00010016004) #26	ZFYVE21 (ENSGALG00010016049) #27	ENSGALG00010018486 #28	ENSGALG00010018488 #28	C14orf2 (ENSGALG00010016066)	TDRD9 (ENSGALG00010016086) #31	RD3L (ENSGALG00010016115) #30	ASPG (ENSGALG00010016159) #32	KIF26A (ENSGALG00010016247)	TMEM179 (ENSGALG00010016897)
Turkey	MODERN SPECIES	25	WDR20 (ENSMGAG00000013353) #9	MOK (ENSMGAG00000013359) #10	ZNF839 (ENSMGAG00000013364) #11	CINP (ENSMGAG00000022897) #12	ENSMGAG00000013366 #14	ENSMGAG00000022478 #14	ANKRD9 (ENSMGAG00000018888)	RCOR1 (ENSMGAG00000013372) #13	TRAF3 (ENSMGAG00000013373) #15	AMN (ENSMGAG00000019544)	CDC42BPB (ENSMGAG00000013377) #16	ENSMGAG00000021489	EXOC3L4 (ENSMGAG00000013393) #18	TNFAIP2 (ENSMGAG00000013394) #19	EIF5 (ENSMGAG00000013398) #20	MARK3 (ENSMGAG00000013401) #22	CKB (ENSMGAG00000013407) #24	TRMT61A (ENSMGAG00000013412) #23	BAG5 (ENSMGAG00000015387)	KLC1 (ENSMGAG00000013413) #25	XRCC3 (ENSMGAG00000013417) #26	ZFYVE21 (ENSMGAG00000019643) #27	PPP1R13B (ENSMGAG00000013421) #28	ENSMGAG00000019587	TDRD9 (ENSMGAG00000013431) #31	RD3L (ENSMGAG00000019047) #30	ASPG (ENSMGAG00000013435) #32	KIF26A (ENSMGAG00000013441)	TMEM179 (ENSMGAG00000013443)	ENSMGAG00000013449	ENSMGAG00000017690
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	423																ENSCJPG00005002018 #22
Japanese quail	MODERN SPECIES	23	WDR20 (ENSCJPG00005002753) #9	MOK (ENSCJPG00005002758) #10	ZNF839 (ENSCJPG00005002762) #11	ENSCJPG00005002765 #12	TECPR2 (ENSCJPG00005002769) #14	ANKRD9 (ENSCJPG00005002774)	RCOR1 (ENSCJPG00005002777) #13	TRAF3 (ENSCJPG00005002792) #15	ENSCJPG00005002800	CDC42BPB (ENSCJPG00005002807) #16	ENSCJPG00005002845	EXOC3L4 (ENSCJPG00005002850) #18	TNFAIP2 (ENSCJPG00005002857) #19	ENSCJPG00005002868 #19	EIF5 (ENSCJPG00005002874) #20	MARK3 (ENSCJPG00005002892) #22	CKB (ENSCJPG00005002930) #24	TRMT61A (ENSCJPG00005002938) #23	BAG5 (ENSCJPG00005002943)	KLC1 (ENSCJPG00005002948) #25	XRCC3 (ENSCJPG00005002960) #26	ZFYVE21 (ENSCJPG00005002962) #27	PPP1R13B (ENSCJPG00005002964) #28	TDRD9 (ENSCJPG00005002971) #31	ENSCJPG00005002980	RD3L (ENSCJPG00005002982) #30	ASPG (ENSCJPG00005002984) #32	KIF26A (ENSCJPG00005002989)	TMEM179 (ENSCJPG00005003011)	ENSCJPG00005003014	ENSCJPG00005003016
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o.d #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Golden eagle	MODERN SPECIES	11	WDR20 (ENSACCG00020000723) #9	MOK (ENSACCG00020000690) #10	ZNF839 (ENSACCG00020000654) #11	CINP (ENSACCG00020000602) #12	TECPR2 (ENSACCG00020000563) #14	ANKRD9 (ENSACCG00020000518)	RCOR1 (ENSACCG00020000489) #13	TRAF3 (ENSACCG00020000453) #15	AMN (ENSACCG00020000429)	CDC42BPB (ENSACCG00020000371) #16	ENSACCG00020000293	ENSACCG00020000291	EXOC3L4 (ENSACCG00020015336) #18	TNFAIP2 (ENSACCG00020015321) #19	EIF5 (ENSACCG00020015299) #20	MARK3 (ENSACCG00020015194) #22	CKB (ENSACCG00020015131) #24	TRMT61A (ENSACCG00020015111) #23	BAG5 (ENSACCG00020015101)	COA8 (ENSACCG00020015086)	KLC1 (ENSACCG00020015060) #25	XRCC3 (ENSACCG00020015032) #26	ZFYVE21 (ENSACCG00020015003) #27	PPP1R13B (ENSACCG00020014921) #28	ENSACCG00020014880	RD3L (ENSACCG00020014869) #30	TDRD9 (ENSACCG00020014851) #31	ASPG (ENSACCG00020014821) #32	KIF26A (ENSACCG00020014793)	TMEM179 (ENSACCG00020014775)	INF2 (ENSACCG00020014757)
Kakapo	MODERN SPECIES	21	HSP90AA1 (ENSSHBG00005010539) #7	WDR20 (ENSSHBG00005010510) #9	ENSSHBG00005010479	ZNF839 (ENSSHBG00005010446) #11	CINP (ENSSHBG00005010419) #12	TECPR2 (ENSSHBG00005000551) #14	ANKRD9 (ENSSHBG00005000537)	RCOR1 (ENSSHBG00005000534) #13	TRAF3 (ENSSHBG00005000526) #15	AMN (ENSSHBG00005000515)	CDC42BPB (ENSSHBG00005012211) #16	ENSSHBG00005012183	ENSSHBG00005012162 #19	ENSSHBG00005012075 #19	EIF5 (ENSSHBG00005012032) #20	MARK3 (ENSSHBG00005011987) #22	ENSSHBG00005011946	CKB (ENSSHBG00005011927) #24	TRMT61A (ENSSHBG00005011913) #23	BAG5 (ENSSHBG00005011899)	COA8 (ENSSHBG00005011882)	KLC1 (ENSSHBG00005011850) #25	XRCC3 (ENSSHBG00005011815) #26	ZFYVE21 (ENSSHBG00005011794) #27	PPP1R13B (ENSSHBG00005011748) #28	ENSSHBG00005011720	RD3L (ENSSHBG00005011705) #30	TDRD9 (ENSSHBG00005011669) #31	ASPG (ENSSHBG00005011634) #32	KIF26A (ENSSHBG00005011575)	TMEM179 (ENSSHBG00005011522)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Great tit	MODERN SPECIES	25	WDR20 (ENSPMJG00000017319) #9	ZNF839 (ENSPMJG00000017320) #11	CINP (ENSPMJG00000017321) #12	TECPR2 (ENSPMJG00000017322) #14	ANKRD9 (ENSPMJG00000017323)	RCOR1 (ENSPMJG00000017325) #13	TRAF3 (ENSPMJG00000017327) #15	AMN (ENSPMJG00000017328)	CDC42BPB (ENSPMJG00000017329) #16	ENSPMJG00000017330	EXOC3L4 (ENSPMJG00000017332) #18	ENSPMJG00000017333	TNFAIP2 (ENSPMJG00000017334) #19	ENSPMJG00000017335 #19	EIF5 (ENSPMJG00000000070) #20	MARK3 (ENSPMJG00000000134) #22	CKB (ENSPMJG00000000334) #24	TRMT61A (ENSPMJG00000000367) #23	BAG5 (ENSPMJG00000000386)	COA8 (ENSPMJG00000000392)	KLC1 (ENSPMJG00000000403) #25	XRCC3 (ENSPMJG00000000462) #26	ZFYVE21 (ENSPMJG00000000476) #27	PPP1R13B (ENSPMJG00000000511) #28	ENSPMJG00000000602	TDRD9 (ENSPMJG00000000607) #31	RD3L (ENSPMJG00000000680) #30	ASPG (ENSPMJG00000000689) #32	KIF26A (ENSPMJG00000000742)	TMEM179 (ENSPMJG00000000866)	INF2 (ENSPMJG00000000946)
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01030000235387	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Flycatcher	MODERN SPECIES	24	HSP90AA1 (ENSFALG00000002722) #7	WDR20 (ENSFALG00000027732) #9	ENSFALG00000002740 #9	CINP (ENSFALG00000002753) #12	TECPR2 (ENSFALG00000002756) #14	ANKRD9 (ENSFALG00000026771)	RCOR1 (ENSFALG00000002760) #13	TRAF3 (ENSFALG00000024309) #15	AMN (ENSFALG00000002778)	CDC42BPB (ENSFALG00000002787) #16	ENSFALG00000002795	EXOC3L4 (ENSFALG00000002799) #18	TNFAIP2 (ENSFALG00000002805) #19	ENSFALG00000002809 #19	ENSFALG00000002816 #20	MARK3 (ENSFALG00000002834) #22	CKB (ENSFALG00000002845) #24	TRMT61A (ENSFALG00000002855) #23	BAG5 (ENSFALG00000028902)	KLC1 (ENSFALG00000002870) #25	XRCC3 (ENSFALG00000002874) #26	ZFYVE21 (ENSFALG00000025223) #27	PPP1R13B (ENSFALG00000002885) #28	ENSFALG00000002903	RD3L (ENSFALG00000002905) #30	TDRD9 (ENSFALG00000002911) #31	ASPG (ENSFALG00000002919) #32	KIF26A (ENSFALG00000027781)	TMEM179 (ENSFALG00000002938)	INF2 (ENSFALG00000002942)	ADSS1 (ENSFALG00000002967)
Passeriformes_g	ANCESTRAL SPECIES		ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Medium ground finch	MODERN SPECIES	6	ENSGFOG00000006701	PPP2R5C (ENSGFOG00000006704)	DYNC1H1 (ENSGFOG00000006784)	HSP90AA1 (ENSGFOG00000007098) #7	WDR20 (ENSGFOG00000007108) #9	ZNF839 (ENSGFOG00000007114) #11	CINP (ENSGFOG00000007122) #12	TECPR2 (ENSGFOG00000007128) #14	RCOR1 (ENSGFOG00000007179) #13	TRAF3 (ENSGFOG00000007259) #15	AMN (ENSGFOG00000007277)	CDC42BPB (ENSGFOG00000007354) #16	ENSGFOG00000008193	TNFAIP2 (ENSGFOG00000008204) #19	EIF5 (ENSGFOG00000008215) #20	MARK3 (ENSGFOG00000008237) #22	CKB (ENSGFOG00000008315) #24	ENSGFOG00000008329	TRMT61A (ENSGFOG00000008333) #23	BAG5 (ENSGFOG00000008343)	ENSGFOG00000008347	KLC1 (ENSGFOG00000008356) #25	XRCC3 (ENSGFOG00000008368) #26	ZFYVE21 (ENSGFOG00000008376) #27	PPP1R13B (ENSGFOG00000008387) #28	ENSGFOG00000008405	RD3L (ENSGFOG00000008409) #30	TDRD9 (ENSGFOG00000008422) #31	ASPG (ENSGFOG00000008460) #32	KIF26A (ENSGFOG00000008481)	TMEM179 (ENSGFOG00000008487)
Passeroidea	ANCESTRAL SPECIES	1	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.o #19	ENSGT01030000234613.b.a.a.p #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT00940000157035 #31	ENSGT00390000002089.b #30	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d
Zebra finch	MODERN SPECIES	27	ENSTGUG00000012808 #7	WDR20 (ENSTGUG00000012810) #9	ZNF839 (ENSTGUG00000012812) #11	CINP (ENSTGUG00000012815) #12	TECPR2 (ENSTGUG00000012816) #14	ANKRD9 (ENSTGUG00000012819)	RCOR1 (ENSTGUG00000012820) #13	TRAF3 (ENSTGUG00000012821) #15	AMN (ENSTGUG00000012825)	CDC42BPB (ENSTGUG00000012826) #16	ENSTGUG00000020932	EXOC3L4 (ENSTGUG00000012834) #18	TNFAIP2 (ENSTGUG00000012835) #19	ENSTGUG00000012839 #19	EIF5 (ENSTGUG00000012841) #20	MARK3 (ENSTGUG00000012848) #22	CKB (ENSTGUG00000012861) #24	TRMT61A (ENSTGUG00000012865) #23	BAG5 (ENSTGUG00000012866)	KLC1 (ENSTGUG00000012874) #25	XRCC3 (ENSTGUG00000012872) #26	ZFYVE21 (ENSTGUG00000012879) #27	PPP1R13B (ENSTGUG00000012883) #28	TDRD9 (ENSTGUG00000012887) #31	RD3L (ENSTGUG00000012886) #30	ASPG (ENSTGUG00000012891) #32	KIF26A (ENSTGUG00000012894)	TMEM179 (ENSTGUG00000029779)	INF2 (ENSTGUG00000012898)	ADSS1 (ENSTGUG00000012901)	ENSTGUG00000012902
Common canary	DUPLICATION
Common canary	MODERN SPECIES	958																ENSSCAG00000000572 #22
Common canary	MODERN SPECIES	3	HSP90AA1 (ENSSCAG00000006734) #7	WDR20 (ENSSCAG00000006730) #9	ZNF839 (ENSSCAG00000006724) #11	CINP (ENSSCAG00000006723) #12	TECPR2 (ENSSCAG00000006698) #14	ANKRD9 (ENSSCAG00000006693)	RCOR1 (ENSSCAG00000006687) #13	TRAF3 (ENSSCAG00000006668) #15	AMN (ENSSCAG00000006654)	CDC42BPB (ENSSCAG00000006631) #16	ENSSCAG00000006626	EXOC3L4 (ENSSCAG00000006619) #18	TNFAIP2 (ENSSCAG00000006616) #19	ENSSCAG00000006610 #19	EIF5 (ENSSCAG00000006596) #20	MARK3 (ENSSCAG00000006579) #22	ENSSCAG00000006575	CKB (ENSSCAG00000006573) #24	TRMT61A (ENSSCAG00000006568) #23	BAG5 (ENSSCAG00000006565)	COA8 (ENSSCAG00000006564)	KLC1 (ENSSCAG00000006554) #25	XRCC3 (ENSSCAG00000006549) #26	ZFYVE21 (ENSSCAG00000006542) #27	PPP1R13B (ENSSCAG00000006505) #28	ENSSCAG00000006497	RD3L (ENSSCAG00000006493) #30	ASPG (ENSSCAG00000006462) #32	KIF26A (ENSSCAG00000006458)	TMEM179 (ENSSCAG00000006441)	INF2 (ENSSCAG00000006426)
Anura	ANCESTRAL SPECIES	22	ENSGT01020000230401.a.a.b.b #7	ENSGT00390000007686.b.d #9	ENSGT00940000159582 #10	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000160538 #15	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01060000248685	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00390000001610 #32	ENSGT00940000159075.A	ENSGT00510000048283.d
Frog	MODERN SPECIES	8	wdr20 (ENSXETG00000010253) #9	mok (ENSXETG00000031912) #10	znf839 (ENSXETG00000034448) #11	cinp (ENSXETG00000010255) #12	tecpr2 (ENSXETG00000010256) #14	ankrd9 (ENSXETG00000047849)	rcor1 (ENSXETG00000012743) #13	ENSXETG00000044836	traf3 (ENSXETG00000012746) #15	amn (ENSXETG00000012751)	cdc42bpb (ENSXETG00000025675) #16	XB5959262 [provisional:lbh] (ENSXETG00000039630)	exoc3l4 (ENSXETG00000048509) #18	tnfaip2 (ENSXETG00000032847) #19	eif5 (ENSXETG00000012766) #20	mark3 (ENSXETG00000012767) #22	ckb (ENSXETG00000023038) #24	ENSXETG00000037885	trmt61a (ENSXETG00000026907) #23	bag5 (ENSXETG00000023051)	klc1 (ENSXETG00000023054) #25	ENSXETG00000048629	xrcc3 (ENSXETG00000023061) #26	zfyve21 (ENSXETG00000023062) #27	ppp1r13b (ENSXETG00000023064) #28	ENSXETG00000039943	ENSXETG00000046748	tdrd9 (ENSXETG00000023069) #31	rd3l (ENSXETG00000037614) #30	ENSXETG00000036467	aspg (ENSXETG00000023076) #32
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000015575	ENSLLEG00000015598	CDC42BPB (ENSLLEG00000015661) #16	ENSLLEG00000016729	ENSLLEG00000016858 #18	ENSLLEG00000017397	ENSLLEG00000017433 #19	ENSLLEG00000017564	ENSLLEG00000017660 #19	MOK (ENSLLEG00000018125) #10	WDR20 (ENSLLEG00000018292) #9	HSP90AA1 (ENSLLEG00000018506) #7	DYNC1H1 (ENSLLEG00000019315)	ENSLLEG00000020191	EIF5 (ENSLLEG00000020253) #20	MARK3 (ENSLLEG00000020743) #22	TRMT61A (ENSLLEG00000020392) #23	ENSLLEG00000022228 #24	BAG5 (ENSLLEG00000022289)	COA8 (ENSLLEG00000022330)	ENSLLEG00000022424	KLC1 (ENSLLEG00000022478) #25	XRCC3 (ENSLLEG00000023112) #26	ZFYVE21 (ENSLLEG00000023198) #27	PPP1R13B (ENSLLEG00000019728) #28	ENSLLEG00000020209	ENSLLEG00000020297	TDRD9 (ENSLLEG00000020393) #31	RD3L (ENSLLEG00000020992) #30	ASPG (ENSLLEG00000021055) #32	ENSLLEG00000021453
Coelacanth	MODERN SPECIES	1129														TNFAIP2 (ENSLACG00000013001) #19	EIF5 (ENSLACG00000012744) #20	MARK3 (ENSLACG00000011533) #22	CKB (ENSLACG00000011177) #24	TRMT61A (ENSLACG00000010801) #23	BAG5 (ENSLACG00000010107)	COA8 (ENSLACG00000009922)	XRCC3 (ENSLACG00000008697) #26	KLC1 (ENSLACG00000008984) #25	PPP1R13B (ENSLACG00000006143) #28	RD3L (ENSLACG00000005571) #30	TDRD9 (ENSLACG00000002257) #31
Actinopterygii	ANCESTRAL SPECIES	63	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00390000015485	ENSGT00390000012351	ENSGT00390000017490	ENSGT00940000164423	ENSGT00940000158450	ENSGT00390000003299	ENSGT00390000009816	ENSGT01030000234517.H.a #16	ENSGT00940000164834	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01060000248685	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00940000155077
Reedfish	MODERN SPECIES	7	eml1 (ENSECRG00000018948)	ENSECRG00000018913	ENSECRG00000018884 #11	cinp (ENSECRG00000018863) #12	tecpr2 (ENSECRG00000018822) #14	ankrd9 (ENSECRG00000018801)	rcor1 (ENSECRG00000018779) #13	TRAF3 (ENSECRG00000018733) #15	AMN (ENSECRG00000018635)	cdc42bpb (ENSECRG00000018358) #16	ENSECRG00000018278	ENSECRG00000018222 #19	ENSECRG00000018166 #18	ENSECRG00000018122 #19	eif5 (ENSECRG00000018080) #20	mark3a (ENSECRG00000017396) #22	ENSECRG00000017225	ckba (ENSECRG00000017166) #24	trmt61a (ENSECRG00000017134) #23	bag5 (ENSECRG00000017120)	coa8 (ENSECRG00000017048)	klc1a (ENSECRG00000016965) #25	xrcc3 (ENSECRG00000016923) #26	zfyve21 (ENSECRG00000016882) #27	ppp1r13bb (ENSECRG00000016829) #28	atp5mj (ENSECRG00000016809)	tdrd9 (ENSECRG00000016554) #31	ENSECRG00000016464	RTN1 (ENSECRG00000016438)	LRRC9 (ENSECRG00000016327)	pcnx4 (ENSECRG00000016288)
Neopterygii	ANCESTRAL SPECIES	43	ENSGT00940000161549.b	ENSGT00940000158601	ENSGT00390000002751 #11	ENSGT00390000015784 #12	ENSGT00940000157283 #14	ENSGT00390000018116	ENSGT00940000155654 #13	ENSGT00940000163836.b	ENSGT00390000007463	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a #19	ENSGT00390000016478 #20	ENSGT00940000154862 #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00930000151053 #26	ENSGT00940000159639 #27	ENSGT00940000153463.a #28	ENSGT01060000248685	ENSGT00390000002089.b #30	ENSGT00940000157035 #31	ENSGT00940000155077
Spotted gar	MODERN SPECIES	673	PLA2G4B (ENSLOCG00000009738)	SPTBN5 (ENSLOCG00000009748)	ehd4 (ENSLOCG00000009774)	ENSLOCG00000009783 #11	cinp (ENSLOCG00000009791) #12	tecpr2 (ENSLOCG00000009804) #14	ankrd9 (ENSLOCG00000009816)	rcor1 (ENSLOCG00000009821) #13	traf3 (ENSLOCG00000009826)	AMN (ENSLOCG00000009838)	cdc42bpb (ENSLOCG00000009847) #16	si:dkeyp-72h1.1 (ENSLOCG00000009854)	ENSLOCG00000009862 #18	tnfaip2a (ENSLOCG00000009874) #19	eif5 (ENSLOCG00000009881) #20	mark3a (ENSLOCG00000009889) #22	ckba (ENSLOCG00000009908) #24	trmt61a (ENSLOCG00000009920) #23	bag5 (ENSLOCG00000009928)	klc1a (ENSLOCG00000009937) #25	xrcc3 (ENSLOCG00000009948) #26	zfyve21 (ENSLOCG00000009956) #27	ppp1r13bb (ENSLOCG00000009968) #28	RD3L (ENSLOCG00000009985) #30	tdrd9 (ENSLOCG00000009992) #31	rtn1b (ENSLOCG00000010017)	LRRC9 (ENSLOCG00000010036)	pcnx4 (ENSLOCG00000010048)	dhrs7 (ENSLOCG00000010060)	ppm1aa (ENSLOCG00000010070)	six6a (ENSLOCG00000010080)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	17	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.a.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b #24	ENSGT00930000151053 #26	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000166988	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00940000159639 #27
Osteoglossiformes	ANCESTRAL SPECIES	491														ENSGT01030000234613.b.a.a.d #19	ENSGT00390000016478.b #20	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.z #24	ENSGT00930000151053 #26	ENSGT00940000155720.b
P. kingsleyae	MODERN SPECIES	475														ENSPKIG00000009703 #19	EIF5 (ENSPKIG00000009676) #20	MARK3 (ENSPKIG00000009515) #22	CKB (ENSPKIG00000009426) #24	xrcc3 (ENSPKIG00000009412) #26	ZBTB25 (ENSPKIG00000009393)	ENSPKIG00000009376
Asian bonytongue	MODERN SPECIES	23	fam241a (ENSSFOG00015013088)	ENSSFOG00015024976	ENSSFOG00015013041	LINGO2 (ENSSFOG00015012996)	zgc:100846 (ENSSFOG00015030089)	ENSSFOG00015012927	ASB2 (ENSSFOG00015012902)	ENSSFOG00015012883	ubr7 (ENSSFOG00015012865)	ENSSFOG00015012854	tmem251 (ENSSFOG00015012838)	chga (ENSSFOG00015012826)	sel1l (ENSSFOG00015012779)	ahsa1a (ENSSFOG00015012724)	si:dkey-177p2.6 (ENSSFOG00015029150)	mark3b (ENSSFOG00015012596) #22	CKB (ENSSFOG00015013978) #24	ENSSFOG00015012580	xrcc3 (ENSSFOG00015012540) #26	btbd6b (ENSSFOG00015012519)	MED18 (ENSSFOG00015012516)	ENSSFOG00015012489	SCMH1 (ENSSFOG00015012440)	cited4b (ENSSFOG00015012426)	ctps1b (ENSSFOG00015012240)	rab42b (ENSSFOG00015012088)	taf12 (ENSSFOG00015028702)	ENSSFOG00015011999	ENSSFOG00015011989	ptprub (ENSSFOG00015011919)	ENSSFOG00015027073
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01060000248856	ENSGT01030000236465	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Perciformes	ANCESTRAL SPECIES	14	ENSGT01030000234667.b.f.a	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00940000161467	ENSGT00390000007473
Cottioidei	ANCESTRAL SPECIES	50	ENSGT00390000001793	ENSGT00940000161652.b.a	ENSGT00940000156714.b	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00390000007441	ENSGT01030000234667.b.f.a	ENSGT00940000159075.B	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00940000161467	ENSGT00390000007473
Stickleback	MODERN SPECIES	18			mboat2b (ENSGACG00000013813)	cep43 (ENSGACG00000013808)	ccr6a (ENSGACG00000013807)	KIF26A (ENSGACG00000013799)	ENSGACG00000013797	spint1b (ENSGACG00000013791)	pak6b (ENSGACG00000013785)	myh6 (ENSGACG00000013782)	zbtb1 (ENSGACG00000013781)	ENSGACG00000013780	ENSGACG00000013769	INF2 (ENSGACG00000013761)	ENSGACG00000013759	ENSGACG00000013756 #22	ckbb (ENSGACG00000013716) #24	prph2lb (ENSGACG00000013713)	cdc42bpb (ENSGACG00000013698) #16	vipas39 (ENSGACG00000013674)	brf1b (ENSGACG00000013671)	xrcc3 (ENSGACG00000013664) #26	ENSGACG00000013654	PPP4R4 (ENSGACG00000013637)	ENSGACG00000013627	tmem251 (ENSGACG00000013624)	ubr7 (ENSGACG00000013590)	ENSGACG00000013588	ENSGACG00000013585	glo1 (ENSGACG00000013580)	ENSGACG00000013578
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.a #22
Huchen	MODERN SPECIES	264												dlb (ENSHHUG00000050527)	ppp1r14aa (ENSHHUG00000050529)	EXOC3L2 (ENSHHUG00000050530) ##18	ENSHHUG00000050531	ENSHHUG00000050532 #22	ENSHHUG00000050533	ENSHHUG00000050534	ENSHHUG00000050535	ckma (ENSHHUG00000050536) ##24	ENSHHUG00000050650 ##24	ENSHHUG00000050652	actb1 (ENSHHUG00000050662)	hnrnpl (ENSHHUG00000050668)	IRF2BP1 (ENSHHUG00000050711)	micu2 (ENSHHUG00000050712)	ENSHHUG00000050724	B3GAT1 (ENSHHUG00000050725)	BBX (ENSHHUG00000050727)	ift46 (ENSHHUG00000050741)	vps11 (ENSHHUG00000050754)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.a.b #22
Osteoglossiformes	ANCESTRAL SPECIES	85	ENSGT00940000160655.kb	ENSGT00940000160655.jb	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b.k	ENSGT01100000263537.b.b.c.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000162008	ENSGT01030000234517.H.a #16	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.a #20	ENSGT00940000154862.x.a.a.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.y #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.a	ENSGT00390000010349.a.a	ENSGT00940000154045.b	ENSGT00940000164854.b	ENSGT00940000156116.B	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656
P. kingsleyae	MODERN SPECIES	215															eif5 (ENSPKIG00000019525) #20	mark3b (ENSPKIG00000019336) #22	ENSPKIG00000019219	CKB (ENSPKIG00000019193) #24	trmt61a (ENSPKIG00000019170) #23	bag5 (ENSPKIG00000019147)	coa8 (ENSPKIG00000019126)	KLC1 (ENSPKIG00000019107) #25	zfyve21 (ENSPKIG00000019061) #27	btbd6b (ENSPKIG00000019025)	brf1b (ENSPKIG00000018964)	NUDT14 (ENSPKIG00000018920)	ENSPKIG00000018868	esr2b (ENSPKIG00000018813)	ENSPKIG00000018755	ENSPKIG00000018674	ENSPKIG00000018623
Asian bonytongue	MODERN SPECIES	6	sel1l (ENSSFOG00015014759)	ENSSFOG00015014738	ahsa1b (ENSSFOG00015025826)	vipas39 (ENSSFOG00015014621)	gpr132b (ENSSFOG00015014606)	cdca4 (ENSSFOG00015014598)	ENSSFOG00015026321	ENSSFOG00015014569	ENSSFOG00015014557	cdc42bpb (ENSSFOG00015014302) #16	ENSSFOG00015014250	ENSSFOG00015014234 #18	ENSSFOG00015014222 #18	ENSSFOG00015014202 #19	eif5 (ENSSFOG00015014173) #20	mark3b (ENSSFOG00015014033) #22	ENSSFOG00015024793	ENSSFOG00015028031	CKB (ENSSFOG00015012559) #24	trmt61a (ENSSFOG00015032190) #23	bag5 (ENSSFOG00015032065)	coa8 (ENSSFOG00015013934)	klc1a (ENSSFOG00015013834) #25	zfyve21 (ENSSFOG00015013789) #27	btbd6b (ENSSFOG00015028046)	brf1b (ENSSFOG00015013763)	nudt14 (ENSSFOG00015026877)	ENSSFOG00015013684	esr2b (ENSSFOG00015013629)	ENSSFOG00015026395	gphb5 (ENSSFOG00015013528)
Osteoglossocephalai	ANCESTRAL SPECIES	17	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.a.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b #24	ENSGT00930000151053 #26	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000166988	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00940000159639 #27
Clupeocephala	ANCESTRAL SPECIES	489													ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT01030000234848
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	345											ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.b.a.a #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.b.a.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.b.a.a #22
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Ovalentaria	ANCESTRAL SPECIES	33										ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Atherinomorphae	ANCESTRAL SPECIES	27	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374	ENSGT00720000108846.b
Cyprinodontoidei	ANCESTRAL SPECIES	32	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374	ENSGT00720000108846.b
NAME_4	ANCESTRAL SPECIES	122										ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00390000001374	ENSGT00940000180392	ENSGT01030000234625.B.c
Sheepshead minnow	DUPLICATION
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1857													ENSCVAG00000017195 #19	ENSCVAG00000017216 #22	ENSCVAG00000017227 #22	ENSCVAG00000017235 #22	ckbb (ENSCVAG00000017265) #24
Sheepshead minnow	MODERN SPECIES	1857														ENSCVAG00000017195 #19	ENSCVAG00000017216 #22	ENSCVAG00000017227 #22	ENSCVAG00000017235 #22	ckbb (ENSCVAG00000017265) #24
Sheepshead minnow	MODERN SPECIES	1857															ENSCVAG00000017195 #19	ENSCVAG00000017216 #22	ENSCVAG00000017227 #22	ENSCVAG00000017235 #22	ckbb (ENSCVAG00000017265) #24
Protacanthopterygii	ANCESTRAL SPECIES	193							ENSGT00390000015102.a.a	ENSGT00940000154598	ENSGT00940000167479	ENSGT00940000159071.y.b	ENSGT00940000156927	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00390000016478.e #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00940000154862.y #22	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b
Salmoninae	ANCESTRAL SPECIES	622				ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT00940000156927.`b.a	ENSGT01030000234517.H.a.e #16	ENSGT00940000164834.b.e	ENSGT01030000234613.b.a.a.c.b.f #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.y.d #22	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT00940000163655.b
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000154209.a.a.h.b	ENSGT00390000009816.b	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000015102.a.a	ENSGT00940000154598.c.a	ENSGT00940000167479.c.a	ENSGT00940000165223.o.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000156927.`b.a	ENSGT01030000234517.H.a.e #16	ENSGT00940000164834.b.e	ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT01030000234613.b.a.a.c.b.f #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT01030000234848.a	ENSGT00940000163655.b	ENSGT00940000159075.B	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00950000182985.a.a.b.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00730000111686.f
Salmo	ANCESTRAL SPECIES	52	ENSGT00390000009816.b	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000015102.a.a	ENSGT00940000154598.c.a	ENSGT00940000167479.c.a	ENSGT00940000165223.o.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000156927.`b.b	ENSGT00940000156927.`b.a	ENSGT01030000234517.H.a.e #16	ENSGT00940000164834.b.e	ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT01030000234613.b.a.a.c.b.f #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT01030000234848.a	ENSGT00940000163655.b	ENSGT01100000266706	ENSGT00940000159075.B	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000163520.A.a.a.a.b.b.b	ENSGT00950000183116.b.a.b.a.a	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00950000182985.a.a.b.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00730000111686.f
Atlantic salmon	MODERN SPECIES	6	ak7a (ENSSSAG00000073251)	ENSSSAG00000073556	ENSSSAG00000075642	ENSSSAG00000085155	ccnk (ENSSSAG00000039406)	ccdc85cb (ENSSSAG00000045488)	ENSSSAG00000039498	ENSSSAG00000040391	ENSSSAG00000040165	cdc42bpb (ENSSSAG00000040963) #16	LBH (ENSSSAG00000062440)	tnfaip2a (ENSSSAG00000062279) #19	tnfaip2a (ENSSSAG00000106959) #19	ENSSSAG00000062187	IF5 (ENSSSAG00000061889) #20	MARK3 (ENSSSAG00000048617) #22	CKB (ENSSSAG00000048236) #24	ENSSSAG00000048358	ENSSSAG00000120835	ENSSSAG00000084611	ENSSSAG00000048064	ENSSSAG00000088891	ENSSSAG00000105968	ENSSSAG00000103170	ENSSSAG00000115691	ENSSSAG00000090445	ENSSSAG00000048014	ENSSSAG00000088306	ENSSSAG00000047972	ENSSSAG00000047965	ENSSSAG00000047958
River trout	MODERN SPECIES	28	ACTA1 (ENSSTUG00000036634)	ak7a (ENSSTUG00000036501)	papola (ENSSTUG00000030211)	ENSSTUG00000029924	ccnk (ENSSTUG00000029917)	ccdc85cb (ENSSTUG00000029911)	ENSSTUG00000029488	ENSSTUG00000029200	ENSSTUG00000029185	cdc42bpb (ENSSTUG00000029024) #16	si:dkeyp-72h1.1 (ENSSTUG00000029000)	ENSSTUG00000028993 #19	tnfaip2a (ENSSTUG00000028955) #19	ENSSTUG00000028934	eif5 (ENSSTUG00000028811) #20	mark3b (ENSSTUG00000026094) #22	ckbb (ENSSTUG00000025914) #24	prph2lb (ENSSTUG00000025904)	ENSSTUG00000025899	ENSSTUG00000025888	KIF26A (ENSSTUG00000025769)	zbtb1 (ENSSTUG00000025748)	ENSSTUG00000025739	ENSSTUG00000025667	ENSSTUG00000025650	ENSSTUG00000025646	myh6 (ENSSTUG00000025632)	pak6b (ENSSTUG00000025615)	ENSSTUG00000025572	ppp1r14d (ENSSTUG00000025564)	spint1b (ENSSTUG00000025538)
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000161899	ENSGT00940000154209.a.b.a.g.a	ENSGT00940000156661.e	ENSGT00940000154209.a.a.h.b	ENSGT00390000009816.b	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000015102.a.a	ENSGT00940000154598.c.a	ENSGT00940000167479.c.a	ENSGT00940000165223.o.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000156927.`b.b.a.a.a	ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT01030000234848.a	ENSGT00940000163655.b	ENSGT00940000159075.B	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00950000182985.a.a.b.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00730000111686.f
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000001809	ccnk (ENSOMYG00000001853)	ccdc85cb (ENSOMYG00000001879)	ENSOMYG00000049257	ENSOMYG00000002390	ENSOMYG00000054358	ENSOMYG00000002874	ENSOMYG00000002119	cdc42bpb (ENSOMYG00000003002) #16	si:dkeyp-72h1.1 (ENSOMYG00000058003)	ENSOMYG00000077507	ENSOMYG00000065169	tnfaip2a (ENSOMYG00000003176) #19	ENSOMYG00000003242	eif5 (ENSOMYG00000003370) #20	MARK3 (ENSOMYG00000003515) #22	ENSOMYG00000075096	CKB (ENSOMYG00000003805) #24	ENSOMYG00000003848	ENSOMYG00000003876	ENSOMYG00000003990	ENSOMYG00000004040	ENSOMYG00000004170	ENSOMYG00000004200	ENSOMYG00000004222	ENSOMYG00000053095	ENSOMYG00000076150	ENSOMYG00000056790	ENSOMYG00000004330	ENSOMYG00000004426	ENSOMYG00000066911
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00940000154209.a.a.h.b	ENSGT00390000009816.b	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000015102.a.a	ENSGT00940000154598.c.a	ENSGT00940000167479.c.a	ENSGT00940000165223.o.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000156927.`b.a.d	ENSGT01030000234517.H.a.e #16	ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.y.d #22	ENSGT01030000234848.a	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT00940000163655.b	ENSGT00940000159075.B	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00950000182985.a.a.b.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00730000111686.f	ENSGT00940000156891.a.b.c	ENSGT00390000003316.c.b.a.f.a
Coho salmon	MODERN SPECIES	3	ENSOKIG00005039455	ENSOKIG00005039544	ENSOKIG00005039927	ENSOKIG00005041128	cdc42bpb (ENSOKIG00005041402) #16	ENSOKIG00005042290	si:dkeyp-72h1.1 (ENSOKIG00005042301)	QRFPR (ENSOKIG00005042320)	polr3a (ENSOKIG00005042374)	ENSOKIG00005042636	ENSOKIG00005045073	ENSOKIG00005046812	ENSOKIG00005046819 #19	ENSOKIG00005046840	eif5 (ENSOKIG00005046854) #20	MARK3 (ENSOKIG00005046912) #22	ckbb (ENSOKIG00005047033) #24	ENSOKIG00005047050	ENSOKIG00005047056	KIF26A (ENSOKIG00005047078)	ENSOKIG00005047108	ENSOKIG00005047112	ENSOKIG00005047122	ENSOKIG00005047138	myh6 (ENSOKIG00005001957)	ENSOKIG00005001971	ENSOKIG00005002003	ENSOKIG00005002024	ENSOKIG00005002043	ENSOKIG00005002066	PLEKHG3 (ENSOKIG00005002115)
Huchen	MODERN SPECIES	5360																mark3b (ENSHHUG00000030999) #22	ckbb (ENSHHUG00000030888) #24
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00950000182836.a	ENSGT00390000009189	ENSGT00940000156671	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.ab #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.d	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a
Protacanthopterygii	ANCESTRAL SPECIES	193				ENSGT00390000015102.a.a	ENSGT00940000154598	ENSGT00940000167479	ENSGT00940000159071.y.b	ENSGT00940000156927	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00390000016478.e #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00940000154862.y #22	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b
Salmoninae	ANCESTRAL SPECIES	622							ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT00940000156927.`b.a	ENSGT01030000234517.H.a.e #16	ENSGT00940000164834.b.e	ENSGT01030000234613.b.a.a.c.b.f #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.y.d #22	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT00940000163655.b
Salmoninae_a	ANCESTRAL SPECIES	104						ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000156671.l.b.a	ENSGT00940000155144.n.t	ENSGT00950000183136.a.b.f	ENSGT00530000063867.a.b.m.b	ENSGT00530000063867.a.a.db	ENSGT01030000234517.H.a.f #16	ENSGT00940000164834.b.f	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT01030000234848.b	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT00940000154746.a.b	ENSGT00940000159887.b	ENSGT00940000157501.f	ENSGT00940000173579	ENSGT00940000156891.a.b.d	ENSGT00390000003316.c.b.a.f.b	ENSGT00390000018199.a.f	ENSGT00940000158432.d	ENSGT00940000154096.b.b.a.f	ENSGT00510000046470.a.b.e	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00940000154798.a.d.b.f	ENSGT00530000063426.b.b.j
Salmo	ANCESTRAL SPECIES	12	ENSGT01030000234564.a.a.a.a.b.b.a.a	ENSGT00940000156714.b.f	ENSGT00940000156464.mb.a.b	ENSGT00940000157701.k.b	ENSGT00940000161652.b.b.p.b.b	ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000156671.l.b.a	ENSGT00940000155144.n.t	ENSGT00950000183136.a.b.f	ENSGT00530000063867.a.b.m.b	ENSGT00530000063867.a.a.db	ENSGT01030000234517.H.a.f #16	ENSGT00940000164834.b.f	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT00940000154746.a.b	ENSGT00940000159887.b	ENSGT00940000157501.f	ENSGT00940000156891.a.b.d	ENSGT00390000003316.c.b.a.f.b	ENSGT00390000018199.a.f	ENSGT00940000158432.d	ENSGT00390000009415.f	ENSGT00940000154096.b.b.a.f	ENSGT00510000046470.a.b.e	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00940000154798.a.d.b.f	ENSGT00530000063426.b.b.j	ENSGT00940000153295.b.j.a
River trout	MODERN SPECIES		kidins220b (ENSSTUG00000034149)	id2b (ENSSTUG00000034522)	ENSSTUG00000034533	ENSSTUG00000034552	sox11b (ENSSTUG00000034561)	nudt14 (ENSSTUG00000034575)	ENSSTUG00000034582	sel1l (ENSSTUG00000034678)	ahsa1a (ENSSTUG00000037323)	ENSSTUG00000037355	cdca4 (ENSSTUG00000037357)	si:dkey-177p2.6 (ENSSTUG00000037358)	cdc42bpb (ENSSTUG00000037407) #16	si:dkeyp-72h1.1 (ENSSTUG00000038664)	eif5 (ENSSTUG00000038697) #20	mark3b (ENSSTUG00000038826) #22	ckbb (ENSSTUG00000039323) #24	ENSSTUG00000039464	ENSSTUG00000044421	paplnb (ENSSTUG00000044428)	erh (ENSSTUG00000044468)	smek1 (ENSSTUG00000044510)	mycn (ENSSTUG00000045646)	mrpl19 (ENSSTUG00000045658)	ENSSTUG00000045687	tram2 (ENSSTUG00000045717)	xkr5a (ENSSTUG00000045797)	ENSSTUG00000045809	prep (ENSSTUG00000045834)	lin28b (ENSSTUG00000046034)	ENSSTUG00000046095
Atlantic salmon	MODERN SPECIES	25	kidins220b (ENSSSAG00000072151)	ENSSSAG00000072144	sox11b (ENSSSAG00000072143)	ENSSSAG00000088329	ENSSSAG00000121038	ENSSSAG00000072139	ENSSSAG00000072133	ENSSSAG00000067588	ENSSSAG00000120792	ENSSSAG00000087136	ENSSSAG00000067479	cdc42bpb (ENSSSAG00000022058) #16	ENSSSAG00000094877	eif5 (ENSSSAG00000015636) #20	ENSSSAG00000104602	ENSSSAG00000008124 #22	ENSSSAG00000100701	CKB (ENSSSAG00000007969) #24	MTHFD1 (ENSSSAG00000003941)	ENSSSAG00000003760	zbtb1 (ENSSSAG00000103681)	ENSSSAG00000115651	paplnb (ENSSSAG00000094083)	ENSSSAG00000088042	erh (ENSSSAG00000003730)	smek1 (ENSSSAG00000002811)	mycn (ENSSSAG00000107853)	ENSSSAG00000032979	ENSSSAG00000100736	ENSSSAG00000007605	tram2 (ENSSSAG00000007615)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000159289	ENSGT00730000111078.d	ENSGT01030000234559.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a	ENSGT00940000156671.l.b.a	ENSGT00940000155144.n.t	ENSGT00950000183136.a.b.f	ENSGT00530000063867.a.b.m.b	ENSGT01030000234517.H.a.f #16	ENSGT00940000164834.b.f	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT00940000154746.a.b	ENSGT00940000159887.b	ENSGT00940000157501.f	ENSGT00940000156891.a.b.d	ENSGT00390000003316.c.b.a.f.b	ENSGT00390000018199.a.f	ENSGT00940000158432.d	ENSGT00940000154096.b.b.a.f	ENSGT00510000046470.a.b.e	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00940000153556.A.l.b	ENSGT00940000154798.a.d.b.f	ENSGT00530000063426.b.b.j	ENSGT00940000153295.b.j.a
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00730000111078.d	ENSGT01030000234559.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00950000183169.A.a.a.a.b.a.b.a.b.a.a.b.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a	ENSGT00940000156671.l.b.a	ENSGT00940000155144.n.t	ENSGT00950000183136.a.b.f	ENSGT00530000063867.a.b.m.b	ENSGT01030000234517.H.a.f #16	ENSGT00940000164834.b.f	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT00940000154746.a.b	ENSGT00940000159887.b	ENSGT00940000157501.f	ENSGT00940000156891.a.b.d	ENSGT00390000003316.c.b.a.f.b	ENSGT00990000211308	ENSGT00940000158432.d	ENSGT00940000154096.b.b.a.f	ENSGT00510000046470.a.b.e	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00940000153556.A.l.b	ENSGT00940000154798.a.d.b.f	ENSGT00530000063426.b.b.j	ENSGT00940000153295.b.j.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2891	ENSOTSG00005032713	ENSOTSG00005032710	ENSOTSG00005032709	ENSOTSG00005032707	ENSOTSG00005032632	ENSOTSG00005032631	ENSOTSG00005032630	nudt14 (ENSOTSG00005032629)	sel1l (ENSOTSG00005024966)	ahsa1a (ENSOTSG00005024958)	ENSOTSG00005024957	cdca4 (ENSOTSG00005024956)	cdc42bpb (ENSOTSG00005024280) #16	si:dkeyp-72h1.1 (ENSOTSG00005024279)	eif5 (ENSOTSG00005024173) #20	mark3b (ENSOTSG00005024169) #22	ckbb (ENSOTSG00005024160) #24
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005022275	ENSOTSG00005022277	ENSOTSG00005022279	ENSOTSG00005022280	ENSOTSG00005022282	ENSOTSG00005022283	nudt14 (ENSOTSG00005022285)	sel1l (ENSOTSG00005022290)	ahsa1a (ENSOTSG00005028580)	ENSOTSG00005028589	ENSOTSG00005028590	cdca4 (ENSOTSG00005028591)	cdc42bpb (ENSOTSG00005028592) #16	si:dkeyp-72h1.1 (ENSOTSG00005029386)	eif5 (ENSOTSG00005000268) #20	mark3b (ENSOTSG00005000274) #22	ckbb (ENSOTSG00005000276) #24	ENSOTSG00005000279	ENSOTSG00005000281	ENSOTSG00005000282	DGKB (ENSOTSG00005000283)	agmo (ENSOTSG00005000286)	MEOX2 (ENSOTSG00005000429)	sostdc1a (ENSOTSG00005000430)	ankmy2a (ENSOTSG00005000436)	tspan13a (ENSOTSG00005000458)	bag6 (ENSOTSG00005000463)	ENSOTSG00005000466	ENSOTSG00005000467	tnfb (ENSOTSG00005000469)	ENSOTSG00005000530
Coho salmon	MODERN SPECIES	13														ENSOKIG00005029213	EIF5 (ENSOKIG00005029238) #20	MARK3 (ENSOKIG00005029324) #22	ENSOKIG00005029432	CKB (ENSOKIG00005029444) #24	ENSOKIG00005029571	MTHFD1 (ENSOKIG00005013727)	ENSOKIG00005018239	ENSOKIG00005018243	zbtb1 (ENSOKIG00005018245)	ENSOKIG00005018255	paplnb (ENSOKIG00005018269)	erh (ENSOKIG00005018282)	ENSOKIG00005018312	mycn (ENSOKIG00005018427)	ENSOKIG00005018435	TRAM2 (ENSOKIG00005018456)	xkr5a (ENSOKIG00005018502)
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000064952	ENSOMYG00000071348	ENSOMYG00000066454	ENSOMYG00000007436	ENSOMYG00000007499	ENSOMYG00000007527	ENSOMYG00000008679	ENSOMYG00000010435	ENSOMYG00000066455	ENSOMYG00000010466	cdc42bpb (ENSOMYG00000011129) #16	ENSOMYG00000016261	eif5 (ENSOMYG00000016280) #20	ENSOMYG00000028310	ENSOMYG00000058917	ENSOMYG00000016375 #22	ENSOMYG00000017740	CKB (ENSOMYG00000017756) #24	MTHFD1 (ENSOMYG00000017946)	ENSOMYG00000018183	zbtb1 (ENSOMYG00000018187)	paplnb (ENSOMYG00000018193)	erh (ENSOMYG00000018223)	smek1 (ENSOMYG00000018278)	mycn (ENSOMYG00000019114)	ENSOMYG00000019154	ENSOMYG00000019196	xkr5a (ENSOMYG00000019346)	ENSOMYG00000019353	ENSOMYG00000019359	ENSOMYG00000019419
Huchen	MODERN SPECIES	539															eif5 (ENSHHUG00000047069) #20	mark3b (ENSHHUG00000047152) #22	ckbb (ENSHHUG00000047612) #24	ENSHHUG00000047696	ENSHHUG00000047703	ENSHHUG00000047975	zbtb1 (ENSHHUG00000047977)	ENSHHUG00000047981	paplnb (ENSHHUG00000047985)	erh (ENSHHUG00000047994)	smek1 (ENSHHUG00000048028)
Euteleosteomorpha	ANCESTRAL SPECIES	345													ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154862.x.a.b.b #22
Northern pike	MODERN SPECIES	22	RYR3 (ENSELUG00000019476)	FMN1 (ENSELUG00000019232)	GREM1 (ENSELUG00000029656)	SCG5 (ENSELUG00000019157)	ENSELUG00000019201	ACTA1 (ENSELUG00000019066)	papola (ENSELUG00000018972)	ENSELUG00000018914	ccnk (ENSELUG00000018878)	ccdc85cb (ENSELUG00000018846)	cyp46a1.3 (ENSELUG00000018130)	cdc42bpb (ENSELUG00000018094) #16	si:dkeyp-72h1.1 (ENSELUG00000017949)	tnfaip2a (ENSELUG00000017931) #19	eif5 (ENSELUG00000017892) #20	mark3b (ENSELUG00000017834) #22	ckbb (ENSELUG00000017747) #24	prph2lb (ENSELUG00000000711)	tmem179aa (ENSELUG00000000705)	chd1 (ENSELUG00000017677)	ENSELUG00000017568	st8sia4 (ENSELUG00000017552)	PAM (ENSELUG00000017536)	LYZ (ENSELUG00000017112)	ENSELUG00000017059	DIRAS2 (ENSELUG00000017020)	syk (ENSELUG00000016990)	auh (ENSELUG00000016935)	nfil3 (ENSELUG00000016858)	ROR2 (ENSELUG00000016826)	sptlc1 (ENSELUG00000016744)
Acanthomorphata	ANCESTRAL SPECIES	155							ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Euacanthomorphacea	ANCESTRAL SPECIES	87					ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Percomorphaceae	ANCESTRAL SPECIES	59						ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00970000195456	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01060000248856	ENSGT01030000236465	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Tetraodontidae	ANCESTRAL SPECIES	36	ENSGT00940000167539	ENSGT00390000001793	ENSGT00940000156714.b	ENSGT00390000007441	ENSGT01030000234667.b.f.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000157058.k	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00390000013955	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.a	ENSGT00390000017610.b	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161252.h
Fugu	MODERN SPECIES	7	allc (ENSTRUG00000005883)	kidins220b (ENSTRUG00000005483)	ENSTRUG00000005325	ccr6 (ENSTRUG00000005295)	ENSTRUG00000026080	ENSTRUG00000023261	zbtb1 (ENSTRUG00000005069)	myh6 (ENSTRUG00000005019)	ENSTRUG00000029598	pak6b (ENSTRUG00000004444)	ENSTRUG00000004077	ENSTRUG00000029307	CEP170B (ENSTRUG00000029408)	ENSTRUG00000002634 #19	ENSTRUG00000028942	MARK3 (ENSTRUG00000016333) #22	ckbb (ENSTRUG00000016321) #24	prph2lb (ENSTRUG00000016317)	cdc42bpb (ENSTRUG00000016273) #16	vipas39 (ENSTRUG00000016248)	brf1b (ENSTRUG00000016217)	btbd6b (ENSTRUG00000016244)	ENSTRUG00000020716	xrcc3 (ENSTRUG00000016205) #26	ENSTRUG00000016175	ASB2 (ENSTRUG00000016113)	ubr7 (ENSTRUG00000016088)	ENSTRUG00000020039	tmem251 (ENSTRUG00000016086)	CLDN20 (ENSTRUG00000016082)	ENSTRUG00000031677
Tetraodon	MODERN SPECIES	5	taf1b (ENSTNIG00000002507)	ADAM17 (ENSTNIG00000002506)	cpsf3 (ENSTNIG00000002505)	asap2b (ENSTNIG00000002504)	allc (ENSTNIG00000002503)	kidins220b (ENSTNIG00000002502)	ENSTNIG00000001118	ccr6a (ENSTNIG00000004790)	ENSTNIG00000004791	ENSTNIG00000004792	zbtb1 (ENSTNIG00000004793)	ENSTNIG00000004794	ENSTNIG00000004796	ENSTNIG00000000136	CEP170B (ENSTNIG00000004797)	ENSTNIG00000004798 #22	ckbb (ENSTNIG00000004799) #24	prph2lb (ENSTNIG00000004800)	cdc42bpb (ENSTNIG00000004801) #16	vipas39 (ENSTNIG00000004802)	brf1b (ENSTNIG00000004803)	btbd6b (ENSTNIG00000004804)	xrcc3 (ENSTNIG00000004805) #26	serpina10a (ENSTNIG00000004806)	ENSTNIG00000004807	ASB2 (ENSTNIG00000004808)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Eupecaria_C	ANCESTRAL SPECIES	46	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k.l	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT00940000157058.k.k	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Gilthead seabream	MODERN SPECIES	14											CEP170B (ENSSAUG00010003518)	ENSSAUG00010003515	ENSSAUG00010003512	ENSSAUG00010003507	ENSSAUG00010003500 #19	ENSSAUG00010003496 #22	ENSSAUG00010003493	ckbb (ENSSAUG00010003484) #24	prph2lb (ENSSAUG00010003483)	ENSSAUG00010003481 #16	ENSSAUG00010003478	allc (ENSSAUG00010003411)	ENSSAUG00010003405	ENSSAUG00010003400	kidins220b (ENSSAUG00010003384)	ENSSAUG00010003375	mboat2b (ENSSAUG00010003310)	ENSSAUG00010003288	cep43 (ENSSAUG00010003269)	ENSSAUG00010003261	ccr6a (ENSSAUG00010003259)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	52	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k.l	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
European seabass	MODERN SPECIES	7	ENSDLAG00005034589	ENSDLAG00005033207	ENSDLAG00005013002	ENSDLAG00005006753	ENSDLAG00005015630	ENSDLAG00005015638	ENSDLAG00005013008	ENSDLAG00005027008	ENSDLAG00005010151	ENSDLAG00005031053	ENSDLAG00005029937	ENSDLAG00005016760	ENSDLAG00005014042	ENSDLAG00005013915	ENSDLAG00005031310	ENSDLAG00005030208 #22	ENSDLAG00005002426	ENSDLAG00005004311 #24	ENSDLAG00005027515	ENSDLAG00005029762	ENSDLAG00005029551 #16	ENSDLAG00005006178	ENSDLAG00005017890	ENSDLAG00005029750	btbd6b (ENSDLAG00005007534)	ENSDLAG00005007516	ENSDLAG00005007541	xrcc3 (ENSDLAG00005026522) #26	ENSDLAG00005016770	ENSDLAG00005027561	ENSDLAG00005005270
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01060000248856	ENSGT01030000236465	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00970000193712	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Anabantaria	ANCESTRAL SPECIES	24	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Zig-zag eel	MODERN SPECIES	30	ENSMAMG00000002534	ENSMAMG00000002393	ENSMAMG00000027061	ENSMAMG00000002380	zbtb1 (ENSMAMG00000002376)	ENSMAMG00000002367	ENSMAMG00000002362	ENSMAMG00000002352	ENSMAMG00000002333	ENSMAMG00000002326	ENSMAMG00000002290	ENSMAMG00000002264	ENSMAMG00000028327	ENSMAMG00000002184	ENSMAMG00000002160 #19	MARK3 (ENSMAMG00000002003) #22	ENSMAMG00000026768	CKB (ENSMAMG00000001970) #24	ENSMAMG00000001951	ENSMAMG00000001707 #16	ENSMAMG00000001931	ENSMAMG00000001606	ENSMAMG00000001569	btbd6b (ENSMAMG00000001551)	ENSMAMG00000001529	xrcc3 (ENSMAMG00000001490) #26	ENSMAMG00000001459	ENSMAMG00000001432	ENSMAMG00000001215	ENSMAMG00000001123	ENSMAMG00000001003
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00970000193712	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Siamese fighting fish	MODERN SPECIES	13	kidins220b (ENSBSLG00000015709)	ENSBSLG00000016581	KIF26A (ENSBSLG00000016901)	ENSBSLG00000016822	ZBTB25 (ENSBSLG00000016839)	zbtb1 (ENSBSLG00000016845)	myh6 (ENSBSLG00000016859)	ENSBSLG00000016875	pak6b (ENSBSLG00000016920)	ENSBSLG00000017583	ENSBSLG00000017596	PLEKHG3 (ENSBSLG00000017778)	CEP170B (ENSBSLG00000017877)	ENSBSLG00000017925	ENSBSLG00000017930 #19	MARK3 (ENSBSLG00000018309) #22	ckbb (ENSBSLG00000020003) #24	prph2lb (ENSBSLG00000020082)	ENSBSLG00000020096	cdc42bpb (ENSBSLG00000020149) #16	ENSBSLG00000020699	vipas39 (ENSBSLG00000021154)	ENSBSLG00000021363	BRF1 (ENSBSLG00000021378)	btbd6b (ENSBSLG00000021418)	xrcc3 (ENSBSLG00000021428) #26	ENSBSLG00000021463	PPP4R4 (ENSBSLG00000021479)	ENSBSLG00000021561	ENSBSLG00000021565	ENSBSLG00000021571
Climbing perch	MODERN SPECIES	15	ENSATEG00000027282	ENSATEG00000005504	ENSATEG00000005527	ENSATEG00000005909	ENSATEG00000026941	ENSATEG00000005922	ENSATEG00000005928	ENSATEG00000005937	ENSATEG00000029310	ENSATEG00000004398	ENSATEG00000006034	ENSATEG00000006377	ENSATEG00000026191 #19	ENSATEG00000006389	ENSATEG00000014372	MARK3 (ENSATEG00000006494) #22	CKB (ENSATEG00000007497) #24	ENSATEG00000007516	ENSATEG00000007520	ENSATEG00000007549	ENSATEG00000028582	ENSATEG00000007973	ENSATEG00000008077 #16	ENSATEG00000008109	ENSATEG00000008118	ENSATEG00000008191	ENSATEG00000008425	btbd6b (ENSATEG00000008447)	ENSATEG00000026683	ENSATEG00000008466 #26	ENSATEG00000008484
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01060000248856	ENSGT01030000236465	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Pleuronectoidei	ANCESTRAL SPECIES	56	ENSGT00940000161652.b.a	ENSGT00940000156714.b	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00390000007441	ENSGT01030000234667.b.f.a	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000157058.k	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00970000193712	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.a	ENSGT00940000161467
Turbot	MODERN SPECIES	12	kidins220b (ENSSMAG00000032129)	mboat2b (ENSSMAG00000024083)	ENSSMAG00000022841	ENSSMAG00000023241	ENSSMAG00000022158	ENSSMAG00000029617	ENSSMAG00000026065	zbtb1 (ENSSMAG00000026890)	ENSSMAG00000036007	ENSSMAG00000029128	ENSSMAG00000030711	ENSSMAG00000010826	ENSSMAG00000033215	ENSSMAG00000010772	ENSSMAG00000010738 #19	MARK3 (ENSSMAG00000010713) #22	CKB (ENSSMAG00000010692) #24	ENSSMAG00000024244	ENSSMAG00000010686	ENSSMAG00000010407 #16	ENSSMAG00000010681	ENSSMAG00000010292	ENSSMAG00000009673	ENSSMAG00000027159	btbd6b (ENSSMAG00000024727)	ENSSMAG00000027465	ENSSMAG00000027652 #26	serpina10a (ENSSMAG00000036016)	ENSSMAG00000026578	ENSSMAG00000034743	ENSSMAG00000023420
Carangaria_A	ANCESTRAL SPECIES	35	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT01060000248856	ENSGT01030000236465	ENSGT00940000156521.b	ENSGT00940000157058.k.h	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Barramundi perch	MODERN SPECIES	385	ENSLCAG00010018065	myh6 (ENSLCAG00010018062)	ENSLCAG00010018057	ENSLCAG00010018052	zbtb1 (ENSLCAG00010018049)	ZBTB25 (ENSLCAG00010018048)	ENSLCAG00010018030	ENSLCAG00010018026	ENSLCAG00010018024	INF2 (ENSLCAG00010018019)	ENSLCAG00010018014	CEP170B (ENSLCAG00010018009)	ENSLCAG00010018004	ENSLCAG00010018000	ENSLCAG00010017996 #19	MARK3 (ENSLCAG00010017986) #22	ENSLCAG00010017980	ckbb (ENSLCAG00010017966) #24	prph2lb (ENSLCAG00010017963)	ENSLCAG00010017960	ENSLCAG00010017957	ENSLCAG00010017956	cdc42bpb (ENSLCAG00010017932) #16	ENSLCAG00010017913	vipas39 (ENSLCAG00010017620)	ENSLCAG00010017533	btbd6b (ENSLCAG00010017532)	ENSLCAG00010017515	brf1b (ENSLCAG00010017485)	xrcc3 (ENSLCAG00010017476) #26	ENSLCAG00010017474
Seriola	ANCESTRAL SPECIES	86	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k.h	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00940000161467
Greater amberjack	MODERN SPECIES	105	zbtb1 (ENSSDUG00000016052)	ENSSDUG00000016055	ENSSDUG00000016070	ENSSDUG00000016079	ENSSDUG00000016091	ENSSDUG00000016103	pak6b (ENSSDUG00000016115)	ENSSDUG00000016128	ENSSDUG00000016147	PLEKHG3 (ENSSDUG00000016163)	ENSSDUG00000016185	CEP170B (ENSSDUG00000016213)	ENSSDUG00000016313	ENSSDUG00000016323	ENSSDUG00000016336 #19	MARK3 (ENSSDUG00000016373) #22	ckbb (ENSSDUG00000016441) #24	prph2lb (ENSSDUG00000016460)	ENSSDUG00000016469	cdc42bpb (ENSSDUG00000016488) #16	ENSSDUG00000016528	vipas39 (ENSSDUG00000016542)	ENSSDUG00000016603	brf1b (ENSSDUG00000016618)	btbd6b (ENSSDUG00000016647)	ENSSDUG00000016671	xrcc3 (ENSSDUG00000016722) #26	ENSSDUG00000016741	ENSSDUG00000016796	ENSSDUG00000016838	ENSSDUG00000016860
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	746																ENSSLDG00000007906 #22
Yellowtail amberjack	MODERN SPECIES	3247											ENSSLDG00000025681	CEP170B (ENSSLDG00000025682)	ENSSLDG00000025683	ENSSLDG00000025684	ENSSLDG00000025685 #19	MARK3 (ENSSLDG00000025686) #22	ckbb (ENSSLDG00000025687) #24	prph2lb (ENSSLDG00000025688)	cdc42bpb (ENSSLDG00000000105) #16	ENSSLDG00000000347	vipas39 (ENSSLDG00000000367)	ENSSLDG00000000444	brf1b (ENSSLDG00000000494)	btbd6b (ENSSLDG00000000569)	ENSSLDG00000000593	xrcc3 (ENSSLDG00000000677) #26	ENSSLDG00000000685	ENSSLDG00000000688	PPP4R4 (ENSSLDG00000000711)	ENSSLDG00000000887	ENSSLDG00000001003
Ovalentaria	ANCESTRAL SPECIES	33												ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Ovalentaria_B	ANCESTRAL SPECIES	32	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT01030000234667.b.f.a.o	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951.e.a	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Nile tilapia	MODERN SPECIES	6	myh6 (ENSONIG00000021261)	ENSONIG00000029544	INAFM2 (ENSONIG00000042210)	ENSONIG00000030639	ENSONIG00000038327	zbtb1 (ENSONIG00000021262)	zbtb25 (ENSONIG00000042861)	ENSONIG00000018840	ENSONIG00000033376	CEP170B (ENSONIG00000018846)	ENSONIG00000018850	ENSONIG00000018851 #19	ENSONIG00000028114	ENSONIG00000019022	ENSONIG00000037576	MARK3 (ENSONIG00000019014) #22	ENSONIG00000019017	ENSONIG00000019019	ckbb (ENSONIG00000019020) #24	prph2lb (ENSONIG00000020147)	ENSONIG00000037245	cdc42bpb (ENSONIG00000019024) #16	ENSONIG00000021182	vipas39 (ENSONIG00000019030)	ENSONIG00000019032	ENSONIG00000038430	ENSONIG00000043137	ENSONIG00000027141	ENSONIG00000037254	ENSONIG00000030874	ENSONIG00000000224
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT01030000234667.b.f.a.o	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951.e.a	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT01030000234667.b.f.a.o	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951.e.a	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT01030000234667.b.f.a.o	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b.k	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951.e.a	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Haplochromini_B	ANCESTRAL SPECIES	49	ENSGT00940000159075.B	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000155691.c.b.k	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000176951.e.b	ENSGT00940000164656.b.b.a.a.a.b.a.a.a.b.b.a.a.b	ENSGT00940000154862.x.a.b.b #22	ENSGT00940000176951.e.a	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.a	ENSGT00390000007473
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005015489	ENSMZEG00005015474	lbr (ENSMZEG00005015462)	ephx1 (ENSMZEG00005015445)	ENSMZEG00005015430	slc5a6a (ENSMZEG00005015396)	rpl7l1 (ENSMZEG00005015377)	ENSMZEG00005015366	ENSMZEG00005015360	CNIH3 (ENSMZEG00005015348)	ptchd4 (ENSMZEG00005015331)	ENSMZEG00005015280	ENSMZEG00005015273	ENSMZEG00005015255	ENSMZEG00005015250	ENSMZEG00005015225 #22	ENSMZEG00005015215	ckbb (ENSMZEG00005015208) #24	prph2lb (ENSMZEG00005015203)	ENSMZEG00005015194	cdc42bpb (ENSMZEG00005015072) #16	ENSMZEG00005015045	vipas39 (ENSMZEG00005015035)	ENSMZEG00005015028	btbd6b (ENSMZEG00005015024)	brf1b (ENSMZEG00005014995)	xrcc3 (ENSMZEG00005014979) #26	serpina10a (ENSMZEG00005014963)	PPP4R4 (ENSMZEG00005014946)	ENSMZEG00005014934	ENSMZEG00005014928
Eastern happy	MODERN SPECIES	6	PLEKHG3 (ENSACLG00000015668)	spint1b (ENSACLG00000015827)	pak6b (ENSACLG00000015852)	myh6 (ENSACLG00000015908)	ENSACLG00000015911	zbtb1 (ENSACLG00000015933)	ZBTB25 (ENSACLG00000015938)	ENSACLG00000015949	ENSACLG00000015991	ENSACLG00000016007	CEP170B (ENSACLG00000016120)	ENSACLG00000016172	ENSACLG00000016200 #19	ENSACLG00000016232	ENSACLG00000016253	MARK3 (ENSACLG00000016273) #22	ENSACLG00000016371	ENSACLG00000016403	ckbb (ENSACLG00000016418) #24	ENSACLG00000016439	prph2lb (ENSACLG00000016443)	ENSACLG00000016448	cdc42bpb (ENSACLG00000016483) #16	ENSACLG00000017057	vipas39 (ENSACLG00000017078)	ENSACLG00000017119	brf1b (ENSACLG00000017136)	btbd6b (ENSACLG00000017278)	xrcc3 (ENSACLG00000017294) #26	ENSACLG00000017337	serpina10a (ENSACLG00000017350)
P. nyererei	MODERN SPECIES	833												ENSPNYG00000014784	CEP170B (ENSPNYG00000014737)	ENSPNYG00000014715	ENSPNYG00000014703	ENSPNYG00000014658 #22	ckbb (ENSPNYG00000014641) #24	ENSPNYG00000014625
Burton s mouthbrooder	MODERN SPECIES	1145																ENSHBUG00000001767 #22	ENSHBUG00000001774	ENSHBUG00000001780 ##24
Lyretail cichlid	MODERN SPECIES	318	spint1b (ENSNBRG00000003919)	pak6b (ENSNBRG00000003864)	ENSNBRG00000003842	myh6 (ENSNBRG00000003821)	ENSNBRG00000003801	INAFM2 (ENSNBRG00000003787)	zbtb1 (ENSNBRG00000003781)	ZBTB25 (ENSNBRG00000003766)	ENSNBRG00000003720	ENSNBRG00000003696	ENSNBRG00000003671	CEP170B (ENSNBRG00000003530)	ENSNBRG00000003484	ENSNBRG00000003458	ENSNBRG00000003440	ENSNBRG00000003333 #22	ENSNBRG00000003271	ENSNBRG00000003251	ENSNBRG00000003228	ckbb (ENSNBRG00000003192) #24	ENSNBRG00000003170	ENSNBRG00000003155	ENSNBRG00000003142	cdc42bpb (ENSNBRG00000002959) #16	ENSNBRG00000002907	vipas39 (ENSNBRG00000002862)	ENSNBRG00000002779	btbd6b (ENSNBRG00000002756)	brf1b (ENSNBRG00000002716)	xrcc3 (ENSNBRG00000002689) #26	ENSNBRG00000002654
Midas cichlid	MODERN SPECIES	1248													slc2a8 (ENSACIG00000010553)	ENSACIG00000010544	ENSACIG00000010531	ENSACIG00000010481 #22	ENSACIG00000010473	ckbb (ENSACIG00000010453) #24	ENSACIG00000010443
Pomacentridae	ANCESTRAL SPECIES	81	ENSGT00940000162312.h.c.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Pomacentridae_A	ANCESTRAL SPECIES	77	ENSGT00940000162312.h.c.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Amphiprion	ANCESTRAL SPECIES	58	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00730000111686.f	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000018377	spint1b (ENSAPEG00000018346)	ENSAPEG00000018335	pak6b (ENSAPEG00000018320)	ENSAPEG00000018309	ENSAPEG00000018074	zbtb1 (ENSAPEG00000018068)	ZBTB25 (ENSAPEG00000018060)	ENSAPEG00000018040	ENSAPEG00000018025	ENSAPEG00000018006	CEP170B (ENSAPEG00000017917)	ENSAPEG00000017874	ENSAPEG00000017852	ENSAPEG00000017824 #19	ENSAPEG00000017744 #22	ENSAPEG00000017729	ckbb (ENSAPEG00000017696) #24	prph2lb (ENSAPEG00000017685)	cdc42bpb (ENSAPEG00000017537) #16	ENSAPEG00000017521	vipas39 (ENSAPEG00000017446)	ENSAPEG00000017423	btbd6b (ENSAPEG00000017405)	ENSAPEG00000017359	brf1b (ENSAPEG00000017279)	xrcc3 (ENSAPEG00000017242) #26	ENSAPEG00000017231	PPP4R4 (ENSAPEG00000017202)	ENSAPEG00000017107	ENSAPEG00000017012
Clown anemonefish	MODERN SPECIES	1603										ENSAOCG00000014458	ENSAOCG00000014484	CEP170B (ENSAOCG00000014540)	ENSAOCG00000014591	ENSAOCG00000014602	ENSAOCG00000014618 #19	MARK3 (ENSAOCG00000014728) #22	ENSAOCG00000014754	ckbb (ENSAOCG00000014766) #24	prph2lb (ENSAOCG00000014783)	cdc42bpb (ENSAOCG00000001010) #16	ENSAOCG00000014877
Spiny chromis	MODERN SPECIES	1195													ENSAPOG00000011614	ENSAPOG00000011628	ENSAPOG00000000760 #19	MARK3 (ENSAPOG00000011714) #22	ENSAPOG00000011725	ckbb (ENSAPOG00000011781) #24	prph2lb (ENSAPOG00000000922)	cdc42bpb (ENSAPOG00000011996) #16	ENSAPOG00000012008	vipas39 (ENSAPOG00000012120)	ENSAPOG00000012146	btbd6b (ENSAPOG00000012159)	ENSAPOG00000012216	brf1b (ENSAPOG00000012303)	xrcc3 (ENSAPOG00000012312) #26	ENSAPOG00000012319	PPP4R4 (ENSAPOG00000012342)
Bicolor damselfish	MODERN SPECIES	1575														ENSSPAG00000002283	ENSSPAG00000002297 #19	MARK3 (ENSSPAG00000002343) #22	ckbb (ENSSPAG00000002450) #24	prph2lb (ENSSPAG00000002484)	cdc42bpb (ENSSPAG00000002537) #16	ENSSPAG00000002819	vipas39 (ENSSPAG00000002837)	ENSSPAG00000002923	brf1b (ENSSPAG00000002964)	btbd6b (ENSSPAG00000003043)	ENSSPAG00000003066	xrcc3 (ENSSPAG00000003096) #26	ENSSPAG00000003108
Atherinomorphae	ANCESTRAL SPECIES	27	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00940000159462.a.b	ENSGT00510000047895
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000161983.b	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120
Aplocheiloidei	ANCESTRAL SPECIES	57					ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374
Mangrove rivulus	MODERN SPECIES	101							ENSKMAG00000014340	ENSKMAG00000014361	ENSKMAG00000014377	ENSKMAG00000014396	ENSKMAG00000014413	INF2 (ENSKMAG00000014440)	CEP170B (ENSKMAG00000014495)	ENSKMAG00000014537	ENSKMAG00000014556 #19	MARK3 (ENSKMAG00000014622) #22	ckbb (ENSKMAG00000014706) #24	prph2lb (ENSKMAG00000014729)	ENSKMAG00000014742	cdc42bpb (ENSKMAG00000014775) #16	ENSKMAG00000014861	vipas39 (ENSKMAG00000014894)	ENSKMAG00000014965	hivep2a (ENSKMAG00000014993)	AIG1 (ENSKMAG00000015023)	ENSKMAG00000015051	pex3 (ENSKMAG00000015076)	atf3 (ENSKMAG00000015125)	nsl1 (ENSKMAG00000015144)	tatdn3 (ENSKMAG00000015161)	ENSKMAG00000015187
Turquoise killifish	MODERN SPECIES	1613	allc (ENSNFUG00015003547)	cep43 (ENSNFUG00015003540)	ccr6a (ENSNFUG00015003538)	ENSNFUG00015003537	KIF26A (ENSNFUG00015003522)	ENSNFUG00015003515	ENSNFUG00015003509	ENSNFUG00015003502	myh6 (ENSNFUG00015003500)	pak6b (ENSNFUG00015003496)	spint1b (ENSNFUG00015003492)	ENSNFUG00015003482	PLEKHG3 (ENSNFUG00015003463)	Nfu_g_1_018754 (ENSNFUG00015003436)	ENSNFUG00015003422 #19	MARK3 (ENSNFUG00015003315) #22	ENSNFUG00015003292	prph2lb (ENSNFUG00015003288)	cdc42bpb (ENSNFUG00015002882) #16	ckbb (ENSNFUG00015002742) #24	vipas39 (ENSNFUG00015002718)	ENSNFUG00015002705	ebna1bp2 (ENSNFUG00015002700)	ENSNFUG00015002689	HIVEP2 (ENSNFUG00015002681)	AIG1 (ENSNFUG00015002674)	ADAT2 (ENSNFUG00015002668)	pex3 (ENSNFUG00015002636)	ENSNFUG00015002623	atf3 (ENSNFUG00015007445)	batf3 (ENSNFUG00015007440)
Cyprinodontoidei	ANCESTRAL SPECIES	32	ENSGT00940000163520.A.a.a.a.b.b.d	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120
NAME_4	ANCESTRAL SPECIES	122													ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT00940000154862.x.a.b.b #22	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2330			ENSFHEG00000010969	ZBTB25 (ENSFHEG00000010979)	ENSFHEG00000010990	myh6 (ENSFHEG00000011004)	pak6b (ENSFHEG00000011029)	ENSFHEG00000011053	ENSFHEG00000011078	ENSFHEG00000011101	ENSFHEG00000011119	ENSFHEG00000011130	CEP170B (ENSFHEG00000011300)	ENSFHEG00000011315	ENSFHEG00000011355 #22	ENSFHEG00000011367 #22	ENSFHEG00000011377	ckbb (ENSFHEG00000011432) #24	prph2lb (ENSFHEG00000011447)	ENSFHEG00000011457	ENSFHEG00000011464 #16	cdc42bpb (ENSFHEG00000011532) #16	ENSFHEG00000011545	ENSFHEG00000011550	vipas39 (ENSFHEG00000011567)	ENSFHEG00000011578	hivep2a (ENSFHEG00000011595)	AIG1 (ENSFHEG00000011636)	ENSFHEG00000011660	pex3 (ENSFHEG00000011775)	atf3 (ENSFHEG00000011790)
Mummichog	MODERN SPECIES	2330				ENSFHEG00000010969	ZBTB25 (ENSFHEG00000010979)	ENSFHEG00000010990	myh6 (ENSFHEG00000011004)	pak6b (ENSFHEG00000011029)	ENSFHEG00000011053	ENSFHEG00000011078	ENSFHEG00000011101	ENSFHEG00000011119	ENSFHEG00000011130	CEP170B (ENSFHEG00000011300)	ENSFHEG00000011315	ENSFHEG00000011355 #22	ENSFHEG00000011367 #22	ENSFHEG00000011377	ckbb (ENSFHEG00000011432) #24	prph2lb (ENSFHEG00000011447)	ENSFHEG00000011457	ENSFHEG00000011464 #16	cdc42bpb (ENSFHEG00000011532) #16	ENSFHEG00000011545	ENSFHEG00000011550	vipas39 (ENSFHEG00000011567)	ENSFHEG00000011578	hivep2a (ENSFHEG00000011595)	AIG1 (ENSFHEG00000011636)	ENSFHEG00000011660	pex3 (ENSFHEG00000011775)
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT01030000234667.b.f.a.q	ENSGT01030000234667.b.f.a.r	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000159075.B	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374	ENSGT00720000108846.b
Platyfish	MODERN SPECIES	6	ENSXMAG00000023019	ENSXMAG00000009631	ENSXMAG00000026613	ENSXMAG00000027665	zbtb1 (ENSXMAG00000020178)	ENSXMAG00000026209	myh6 (ENSXMAG00000026244)	pak6b (ENSXMAG00000009610)	ENSXMAG00000021868	ENSXMAG00000009603	PLEKHG3 (ENSXMAG00000009599)	ENSXMAG00000027819	CEP170B (ENSXMAG00000009581)	ENSXMAG00000022562	ENSXMAG00000029044 #19	MARK3 (ENSXMAG00000006647) #22	ckbb (ENSXMAG00000006694) #24	prph2lb (ENSXMAG00000006717)	ENSXMAG00000029153	cdc42bpb (ENSXMAG00000013537) #16	ENSXMAG00000019758	ENSXMAG00000021929	vipas39 (ENSXMAG00000013526)	ENSXMAG00000013522	hivep2a (ENSXMAG00000013507)	AIG1 (ENSXMAG00000017816)	ENSXMAG00000017810	pex3 (ENSXMAG00000021480)	ENSXMAG00000023925	atf3 (ENSXMAG00000026118)	batf3 (ENSXMAG00000029183)
Poecilia	ANCESTRAL SPECIES	71					ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374	ENSGT00720000108846.b
Guppy	DUPLICATION
Guppy	DUPLICATION
Guppy	MODERN SPECIES	452	TMEM30A (ENSPREG00000013031)	FILIP1 (ENSPREG00000013051)	ENSPREG00000013060	ENSPREG00000013069	zbtb1 (ENSPREG00000013078)	ENSPREG00000013085	ENSPREG00000013114	myh6 (ENSPREG00000013132)	pak6b (ENSPREG00000013145)	spint1b (ENSPREG00000013167)	ENSPREG00000013195	ENSPREG00000013229	ENSPREG00000013307	CEP170B (ENSPREG00000013399)	ENSPREG00000013467	ENSPREG00000013473 #22	ENSPREG00000013486 #22	ENSPREG00000013502 #22	ckbb (ENSPREG00000013507) #24	prph2lb (ENSPREG00000013530)	ENSPREG00000013538	cdc42bpb (ENSPREG00000013594) #16	ENSPREG00000013747	vipas39 (ENSPREG00000013772)	ENSPREG00000013807	hivep2a (ENSPREG00000013853)	AIG1 (ENSPREG00000013905)	ENSPREG00000013931	pex3 (ENSPREG00000013958)	atf3 (ENSPREG00000013998)	batf3 (ENSPREG00000014025)
Guppy	MODERN SPECIES	452	FILIP1 (ENSPREG00000013051)	ENSPREG00000013060	ENSPREG00000013069	zbtb1 (ENSPREG00000013078)	ENSPREG00000013085	ENSPREG00000013114	myh6 (ENSPREG00000013132)	pak6b (ENSPREG00000013145)	spint1b (ENSPREG00000013167)	ENSPREG00000013195	ENSPREG00000013229	ENSPREG00000013307	CEP170B (ENSPREG00000013399)	ENSPREG00000013467	ENSPREG00000013473 #22	ENSPREG00000013486 #22	ENSPREG00000013502 #22	ckbb (ENSPREG00000013507) #24	prph2lb (ENSPREG00000013530)	ENSPREG00000013538	cdc42bpb (ENSPREG00000013594) #16	ENSPREG00000013747	vipas39 (ENSPREG00000013772)	ENSPREG00000013807	hivep2a (ENSPREG00000013853)	AIG1 (ENSPREG00000013905)	ENSPREG00000013931	pex3 (ENSPREG00000013958)	atf3 (ENSPREG00000013998)	batf3 (ENSPREG00000014025)	nsl1 (ENSPREG00000014035)
Guppy	MODERN SPECIES	452	ENSPREG00000013060	ENSPREG00000013069	zbtb1 (ENSPREG00000013078)	ENSPREG00000013085	ENSPREG00000013114	myh6 (ENSPREG00000013132)	pak6b (ENSPREG00000013145)	spint1b (ENSPREG00000013167)	ENSPREG00000013195	ENSPREG00000013229	ENSPREG00000013307	CEP170B (ENSPREG00000013399)	ENSPREG00000013467	ENSPREG00000013473 #22	ENSPREG00000013486 #22	ENSPREG00000013502 #22	ckbb (ENSPREG00000013507) #24	prph2lb (ENSPREG00000013530)	ENSPREG00000013538	cdc42bpb (ENSPREG00000013594) #16	ENSPREG00000013747	vipas39 (ENSPREG00000013772)	ENSPREG00000013807	hivep2a (ENSPREG00000013853)	AIG1 (ENSPREG00000013905)	ENSPREG00000013931	pex3 (ENSPREG00000013958)	atf3 (ENSPREG00000013998)	batf3 (ENSPREG00000014025)	nsl1 (ENSPREG00000014035)	tatdn3 (ENSPREG00000014054)
NAME_6	ANCESTRAL SPECIES	165				ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000155691.c.b	ENSGT00940000157058.k	ENSGT00940000174804	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000154862.x.a.b.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT01030000234517.H.a #16	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000156512.b.b	ENSGT00940000158696	ENSGT00940000164335	ENSGT00940000165183	ENSGT00940000156376	ENSGT00940000161120	ENSGT00390000001374	ENSGT00720000108846.b
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	610		ENSPFOG00000016183	ZBTB25 (ENSPFOG00000016187)	zbtb1 (ENSPFOG00000016193)	ENSPFOG00000016202	INAFM2 (ENSPFOG00000020872)	pak6b (ENSPFOG00000016211)	ENSPFOG00000022108	ENSPFOG00000016243	PLEKHG3 (ENSPFOG00000016283)	ENSPFOG00000016329	INF2 (ENSPFOG00000016421)	CEP170B (ENSPFOG00000016483)	ENSPFOG00000023717	ENSPFOG00000016535 #19	ENSPFOG00000016566 #22	ENSPFOG00000016567 #22	ckbb (ENSPFOG00000016570) #24	prph2lb (ENSPFOG00000016586)	ENSPFOG00000016602	cdc42bpb (ENSPFOG00000016691) #16	ENSPFOG00000020874	vipas39 (ENSPFOG00000016882)	ENSPFOG00000016937	hivep2a (ENSPFOG00000016971)	AIG1 (ENSPFOG00000017002)	ENSPFOG00000017037	pex3 (ENSPFOG00000017063)	atf3 (ENSPFOG00000017099)	batf3 (ENSPFOG00000017107)	nsl1 (ENSPFOG00000017115)
Amazon molly	MODERN SPECIES	610	ENSPFOG00000016183	ZBTB25 (ENSPFOG00000016187)	zbtb1 (ENSPFOG00000016193)	ENSPFOG00000016202	INAFM2 (ENSPFOG00000020872)	pak6b (ENSPFOG00000016211)	ENSPFOG00000022108	ENSPFOG00000016243	PLEKHG3 (ENSPFOG00000016283)	ENSPFOG00000016329	INF2 (ENSPFOG00000016421)	CEP170B (ENSPFOG00000016483)	ENSPFOG00000023717	ENSPFOG00000016535 #19	ENSPFOG00000016566 #22	ENSPFOG00000016567 #22	ckbb (ENSPFOG00000016570) #24	prph2lb (ENSPFOG00000016586)	ENSPFOG00000016602	cdc42bpb (ENSPFOG00000016691) #16	ENSPFOG00000020874	vipas39 (ENSPFOG00000016882)	ENSPFOG00000016937	hivep2a (ENSPFOG00000016971)	AIG1 (ENSPFOG00000017002)	ENSPFOG00000017037	pex3 (ENSPFOG00000017063)	atf3 (ENSPFOG00000017099)	batf3 (ENSPFOG00000017107)	nsl1 (ENSPFOG00000017115)	tatdn3 (ENSPFOG00000017125)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	779																ENSPLAG00000021569 #22	ckbb (ENSPLAG00000021564) #24	prph2lb (ENSPLAG00000021548)	ENSPLAG00000021542	ENSPLAG00000021523 #16	cdc42bpb (ENSPLAG00000021501) #16	ENSPLAG00000021478	vipas39 (ENSPLAG00000021461)	ENSPLAG00000021446	hivep2a (ENSPLAG00000021436)	AIG1 (ENSPLAG00000021426)	ENSPLAG00000021399	pex3 (ENSPLAG00000021381)	ENSPLAG00000021349	rps7 (ENSPLAG00000021335)	atf3 (ENSPLAG00000021318)
Sailfin molly	MODERN SPECIES	2850													CEP170B (ENSPLAG00000003487)	ENSPLAG00000003467	ENSPLAG00000003449 #19	ENSPLAG00000003418 #22
Otomorpha	ANCESTRAL SPECIES	268	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22
Otophysi	ANCESTRAL SPECIES	195	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22	ENSGT00940000153446.b	ENSGT00940000157581.b	ENSGT00390000011905	ENSGT00940000163503.B.c.n	ENSGT00940000162190	ENSGT00390000003188	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058	ENSGT00940000167206	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000161329.d	ENSGT00940000155237
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	54							ENSGT01100000263524.C.b	ENSGT01100000263524.D.d.b	ENSGT00940000166083.b.b	ENSGT00940000156406.b.c	ENSGT00940000154862.x.a.b.d #22	ENSGT00940000153446.b.y	ENSGT00940000157581.b.a	ENSGT00940000166083.b.a	ENSGT00940000156406.b.d	ENSGT00940000154862.x.a.b.c #22	ENSGT00940000153446.b.z	ENSGT00940000157581.b.b	ENSGT00390000011905	ENSGT01000000220334	ENSGT00940000163503.B.c.n.b	ENSGT00940000162190.d	ENSGT00390000003188.k	ENSGT00940000156058.c	ENSGT00940000167206.m.b	ENSGT00390000002143.b.a.h.b	ENSGT00390000016811.h.a	ENSGT00940000156557.h.a	ENSGT00530000063085.A.a.e.b.a	ENSGT00530000063085.A.a.e.b.b	ENSGT00940000161329.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	12	gpcpd1 (ENSCARG00000031508)	napbb (ENSCARG00000031824)	ENSCARG00000032018	TRIB2 (ENSCARG00000032031)	KLHL29 (ENSCARG00000032052)	ATAD2B (ENSCARG00000032194)	UBXN2A (ENSCARG00000033886)	mfsd2b (ENSCARG00000033914)	wdcp (ENSCARG00000033999)	fkbp1b (ENSCARG00000034019)	mmut (ENSCARG00000034049)	opn8b (ENSCARG00000034527)	opn8a (ENSCARG00000034549)	runx2b (ENSCARG00000034580)	clic5b (ENSCARG00000034634)	mark3b (ENSCARG00000034810) #22	laptm4a (ENSCARG00000039916)	matn3a (ENSCARG00000039934)	ttc32 (ENSCARG00000039999)	zpax1 (ENSCARG00000040025)	mixl1 (ENSCARG00000040435)	lin9 (ENSCARG00000040483)	parp1 (ENSCARG00000041173)	ENSCARG00000042827	EFR3B (ENSCARG00000043049)	pomcb (ENSCARG00000047834)	ENSCARG00000047850	SNX9 (ENSCARG00000047902)	ENSCARG00000048272	ENSCARG00000048325	ENSCARG00000048442
Goldfish	MODERN SPECIES	12	ENSCARG00000037367	fdft1 (ENSCARG00000036696)	gata4 (ENSCARG00000036645)	GPR6 (ENSCARG00000036611)	lin28b (ENSCARG00000036589)	RAB10 (ENSCARG00000036574)	ENSCARG00000036566	ENSCARG00000036554	bmp2b (ENSCARG00000036539)	ENSCARG00000058379	trmt6 (ENSCARG00000058163)	ENSCARG00000058140	ENSCARG00000058114	runx2b (ENSCARG00000058088)	clic5b (ENSCARG00000057984)	mark3b (ENSCARG00000056740) #22	laptm4a (ENSCARG00000056649)	matn3a (ENSCARG00000056619)	ttc32 (ENSCARG00000056612)	mixl1 (ENSCARG00000056308)	lin9 (ENSCARG00000056261)	ENSCARG00000056239	parp1 (ENSCARG00000055040)	AFDN (ENSCARG00000054722)	unc93a (ENSCARG00000054635)	ENSCARG00000054609	plg (ENSCARG00000052340)	slc22a2 (ENSCARG00000052074)	igf2r (ENSCARG00000049418)	tdrd15 (ENSCARG00000049233)	rfx6 (ENSCARG00000048860)
Cyprininae_a	ANCESTRAL SPECIES	342	ENSGT00440000033970.g	ENSGT00390000005826.a.b.g.b	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d.b	ENSGT00940000158824.k.a	ENSGT00550000074694.b.l	ENSGT00520000055567.a.b.x	ENSGT00390000005318.b.b.a.q	ENSGT00390000001660.i	ENSGT00390000011892.c	ENSGT01100000263524.C.a	ENSGT01100000263524.D.d.a	ENSGT00940000166083.b.a	ENSGT00940000156406.b.d	ENSGT00940000154862.x.a.b.c #22	ENSGT00940000153446.b.z	ENSGT00940000157581.b.b	ENSGT00940000163503.B.c.n.a	ENSGT00940000162190.c	ENSGT00390000003188.l	ENSGT01030000234555.a.b.f.a	ENSGT00940000156058.d	ENSGT00940000167206.m.a	ENSGT00390000002143.b.a.h.a	ENSGT00390000016811.h.b
Golden-line barbel	MODERN SPECIES	339					ATAD2B (ENSSGRG00000040192)	UBXN2A (ENSSGRG00000040180)	ENSSGRG00000040178	mfsd2b (ENSSGRG00000040176)	wdcp (ENSSGRG00000040174)	mmut (ENSSGRG00000039987)	opn8b (ENSSGRG00000039975)	opn8b (ENSSGRG00000039972)	opn8a (ENSSGRG00000039970)	runx2b (ENSSGRG00000039885)	clic5b (ENSSGRG00000039883)	mark3b (ENSSGRG00000039828) #22	laptm4a (ENSSGRG00000039825)	matn3a (ENSSGRG00000039824)	mixl1 (ENSSGRG00000039811)	lin9 (ENSSGRG00000039760)	ENSSGRG00000039754	parp1 (ENSSGRG00000038686)	ENSSGRG00000038444	EFR3B (ENSSGRG00000038390)	pomcb (ENSSGRG00000038382)	ENSSGRG00000038379	SNX9 (ENSSGRG00000037842)	AFDN (ENSSGRG00000037589)	unc93a (ENSSGRG00000037564)	ttll2 (ENSSGRG00000037561)	plg (ENSSGRG00000036411)
Common carp reference	MODERN SPECIES	34	trmt6 (ENSCCRG00000048713)	gpcpd1 (ENSCCRG00000048676)	napbb (ENSCCRG00000005181)	ENSCCRG00000048667	ENSCCRG00000073168	KLHL29 (ENSCCRG00000066352)	ATAD2B (ENSCCRG00000075346)	UBXN2A (ENSCCRG00000004119)	mfsd2b (ENSCCRG00000004122)	wdcp (ENSCCRG00000004127)	mmut (ENSCCRG00000069295)	opn8b (ENSCCRG00000066264)	opn8a (ENSCCRG00000034905)	runx2b (ENSCCRG00000012293)	clic5b (ENSCCRG00000076958)	mark3b (ENSCCRG00000038154) #22	matn3a (ENSCCRG00000042267)	zpax1 (ENSCCRG00000042273)	mixl1 (ENSCCRG00000072026)	lin9 (ENSCCRG00000022138)	parp1 (ENSCCRG00000019075)	ENSCCRG00000066691	ENSCCRG00000059555	ENSCCRG00000078476	ENSCCRG00000070339	ENSCCRG00000076798	pomcb (ENSCCRG00000071628)	ENSCCRG00000025746	ENSCCRG00000035710	ENSCCRG00000055345	ENSCCRG00000025718
Cyprininae	ANCESTRAL SPECIES	54												ENSGT01100000263524.C.b	ENSGT01100000263524.D.d.b	ENSGT00940000166083.b.b	ENSGT00940000156406.b.c	ENSGT00940000154862.x.a.b.d #22	ENSGT00940000153446.b.y	ENSGT00940000157581.b.a	ENSGT00940000166083.b.a	ENSGT00940000156406.b.d	ENSGT00940000154862.x.a.b.c #22	ENSGT00940000153446.b.z	ENSGT00940000157581.b.b	ENSGT00390000011905	ENSGT01000000220334	ENSGT00940000163503.B.c.n.b	ENSGT00940000162190.d	ENSGT00390000003188.k	ENSGT00940000156058.c	ENSGT00940000167206.m.b	ENSGT00390000002143.b.a.h.b
Goldfish	MODERN SPECIES	2710		bmp2b (ENSCARG00000059543)	ENSCARG00000059110	trmt6 (ENSCARG00000058727)	gpcpd1 (ENSCARG00000058532)	napbb (ENSCARG00000058360)	TRIB2 (ENSCARG00000058353)	KLHL29 (ENSCARG00000058281)	ATAD2B (ENSCARG00000057892)	UBXN2A (ENSCARG00000057823)	wdcp (ENSCARG00000057805)	fkbp1b (ENSCARG00000057766)	opn8b (ENSCARG00000057745)	runx2b (ENSCARG00000057637)	clic5b (ENSCARG00000057603)	mark3b (ENSCARG00000053966) #22	laptm4a (ENSCARG00000053822)	matn3a (ENSCARG00000053730)	ENSCARG00000053692	mixl1 (ENSCARG00000053685)	zpax1 (ENSCARG00000053302)	lin9 (ENSCARG00000052409)	ENSCARG00000052328	parp1 (ENSCARG00000051945)	EFR3B (ENSCARG00000049710)	pomcb (ENSCARG00000049624)	SNX9 (ENSCARG00000047322)	ENSCARG00000047204	ENSCARG00000047119	AFDN (ENSCARG00000046716)
Cyprininae_a	ANCESTRAL SPECIES	130	ENSGT00390000008327.i	ENSGT00440000033970.h	ENSGT00390000005826.a.b.g.a	ENSGT00950000182986.a.b.a.d.a	ENSGT00940000158824.k.b	ENSGT00550000074694.b.k	ENSGT00520000055567.a.b.w	ENSGT00390000005318.b.b.a.r	ENSGT00390000001660.j	ENSGT00940000153311.a.b.b	ENSGT00390000011892.d	ENSGT01100000263524.C.b	ENSGT01100000263524.D.d.b	ENSGT00940000166083.b.b	ENSGT00940000156406.b.c	ENSGT00940000154862.x.a.b.d #22	ENSGT00940000153446.b.y	ENSGT00940000157581.b.a	ENSGT00390000011905	ENSGT01000000220334	ENSGT00940000163503.B.c.n.b	ENSGT00940000162190.d	ENSGT00390000003188.k	ENSGT00940000156058.c	ENSGT00940000167206.m.b	ENSGT00390000002143.b.a.h.b	ENSGT00390000016811.h.a	ENSGT00940000164041.b.a	ENSGT00940000156557.h.b	ENSGT00530000063085.A.a.e.a.b
Common carp reference	MODERN SPECIES	28	trmt6 (ENSCCRG00000011065)	gpcpd1 (ENSCCRG00000004875)	napbb (ENSCCRG00000072140)	ENSCCRG00000048395	KLHL29 (ENSCCRG00000010346)	ATAD2B (ENSCCRG00000080764)	UBXN2A (ENSCCRG00000014121)	mfsd2b (ENSCCRG00000062751)	wdcp (ENSCCRG00000031585)	fkbp1b (ENSCCRG00000063756)	mmut (ENSCCRG00000076892)	opn8b (ENSCCRG00000031575)	opn8a (ENSCCRG00000082600)	runx2b (ENSCCRG00000038015)	clic5b (ENSCCRG00000012287)	mark3b (ENSCCRG00000039460) #22	matn3a (ENSCCRG00000075805)	ENSCCRG00000065616	zpax1 (ENSCCRG00000039316)	mixl1 (ENSCCRG00000039333)	lin9 (ENSCCRG00000039353)	parp1 (ENSCCRG00000039020)	ENSCCRG00000039728	pomcb (ENSCCRG00000048056)	ENSCCRG00000044923	ENSCCRG00000043129	ENSCCRG00000055781	ENSCCRG00000077909	ENSCCRG00000066620	unc93a (ENSCCRG00000043615)	ENSCCRG00000057699
Golden-line barbel	MODERN SPECIES	377												opn8b (ENSSGRG00000030533)	opn8a (ENSSGRG00000030534)	runx2b (ENSSGRG00000030535)	clic5b (ENSSGRG00000030603)	mark3b (ENSSGRG00000030678) #22	laptm4a (ENSSGRG00000030679)	matn3a (ENSSGRG00000030684)	ttc32 (ENSSGRG00000030686)	mixl1 (ENSSGRG00000030689)	lin9 (ENSSGRG00000030691)	parp1 (ENSSGRG00000030892)	ENSSGRG00000030940	EFR3B (ENSSGRG00000030953)	pomcb (ENSSGRG00000032178)	ENSSGRG00000032179	SNX9 (ENSSGRG00000032181)	ENSSGRG00000033080	ENSSGRG00000033082	ENSSGRG00000033083	AFDN (ENSSGRG00000033086)
Zebrafish	MODERN SPECIES	12	napbb (ENSDARG00000069101)	ENSDARG00000076380	TRIB2 (ENSDARG00000068179)	KLHL29 (ENSDARG00000087688)	ATAD2B (ENSDARG00000060537)	UBXN2A (ENSDARG00000087180)	mfsd2b (ENSDARG00000030263)	wdcp (ENSDARG00000016528)	fkbp1b (ENSDARG00000052625)	mmut (ENSDARG00000060554)	opn8b (ENSDARG00000079045)	opn8a (ENSDARG00000086186)	ENSDARG00000115293	runx2b (ENSDARG00000059233)	clic5b (ENSDARG00000070584)	mark3b (ENSDARG00000026630) #22	laptm4a (ENSDARG00000006397)	matn3a (ENSDARG00000069245)	ttc32 (ENSDARG00000069241)	zpax1 (ENSDARG00000069251)	mixl1 (ENSDARG00000069252)	lin9 (ENSDARG00000028475)	ENSDARG00000088165	parp1 (ENSDARG00000019529)	ENSDARG00000032838	ENSDARG00000096765	ENSDARG00000094226	ENSDARG00000094146	pimr132 (ENSDARG00000069276)	pimr133 (ENSDARG00000092692)	pimr109 (ENSDARG00000069281)
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT01030000234848	ENSGT00940000153463.a.c.b #28	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u
Channel catfish	MODERN SPECIES	17	chgb (ENSIPUG00000019353)	gpcpd1 (ENSIPUG00000019244)	Napb (ENSIPUG00000019173)	gzf1 (ENSIPUG00000019159)	trib2 (ENSIPUG00000019145)	klhl29 (ENSIPUG00000019111)	ATAD2B (ENSIPUG00000019061)	ubxn2a (ENSIPUG00000019008)	mfsd2b (ENSIPUG00000018957)	wdcp (ENSIPUG00000018933)	FKBP1B (ENSIPUG00000018910)	Mut (ENSIPUG00000018835)	opn8b (ENSIPUG00000018819)	runx2b (ENSIPUG00000018779)	clic5b (ENSIPUG00000018758)	mark3b (ENSIPUG00000018616) #22	DAAM1 (ENSIPUG00000018404)	l3hypdh (ENSIPUG00000018376)	ENSIPUG00000018352	ENSIPUG00000018321	esr2a (ENSIPUG00000018308)	jag2 (ENSIPUG00000018128)	nudt14 (ENSIPUG00000018103)	btbd6b (ENSIPUG00000017933)	brf1b (ENSIPUG00000017884)	ENSIPUG00000017835	CKB (ENSIPUG00000017754) #24	ppp1r13b (ENSIPUG00000017609) #28	atp5mj (ENSIPUG00000017590)	ENSIPUG00000017584	rtn1b (ENSIPUG00000017525)
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00940000174827	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #26	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000153463.a.c.b #28	ENSGT01060000248685	ENSGT00390000002089.b #30
Characoidei	ANCESTRAL SPECIES	41	ENSGT00440000033970	ENSGT00390000005826.a.b.g	ENSGT00870000136554	ENSGT00950000182986.a.b.a.d	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b
Red-bellied piranha	MODERN SPECIES	11	gpcpd1 (ENSPNAG00000019211)	napbb (ENSPNAG00000003570)	ENSPNAG00000019061	TRIB2 (ENSPNAG00000019029)	KLHL29 (ENSPNAG00000019010)	ATAD2B (ENSPNAG00000018946)	UBXN2A (ENSPNAG00000018791)	mfsd2b (ENSPNAG00000018780)	wdcp (ENSPNAG00000018766)	ENSPNAG00000018741	mmut (ENSPNAG00000018712)	opn8b (ENSPNAG00000018648)	opn8a (ENSPNAG00000018619)	runx2b (ENSPNAG00000018600)	clic5b (ENSPNAG00000018531)	mark3b (ENSPNAG00000018462) #22	daam1b (ENSPNAG00000018221)	L3HYPDH (ENSPNAG00000018163)	ENSPNAG00000018111	ENSPNAG00000018101	ENSPNAG00000018077	esr2a (ENSPNAG00000018028)
Mexicana tetra	MODERN SPECIES	18	ttr (ENSAMXG00000002423)	ENSAMXG00000002421	ENSAMXG00000002407	ENSAMXG00000030767	ENSAMXG00000039417	dsc2l (ENSAMXG00000002361)	si:dkey-5n18.1 (ENSAMXG00000032780)	cdh2 (ENSAMXG00000040605)	aqp4 (ENSAMXG00000019647)	ENSAMXG00000032444	ENSAMXG00000019513	ENSAMXG00000030268	psma8 (ENSAMXG00000038711)	ENSAMXG00000035866	clic5b (ENSAMXG00000035157)	mark3b (ENSAMXG00000001388) #22	daam1b (ENSAMXG00000001378)	L3HYPDH (ENSAMXG00000032989)	nudt14 (ENSAMXG00000029131)	jag2b (ENSAMXG00000020545)	esr2a (ENSAMXG00000036234)	ENSAMXG00000029675	ENSAMXG00000038470	btbd6b (ENSAMXG00000036054)	brf1b (ENSAMXG00000020489)	xrcc3 (ENSAMXG00000020479) #26	ENSAMXG00000032659	ckbb (ENSAMXG00000001460) #24	ppp1r13bb (ENSAMXG00000020459) #28	ENSAMXG00000034131	ENSAMXG00000020448 #30
Electric eel	MODERN SPECIES	2	chgb (ENSEEEG00000012463)	gpcpd1 (ENSEEEG00000012466)	napbb (ENSEEEG00000012475)	ENSEEEG00000012512	ENSEEEG00000012513	TRIB2 (ENSEEEG00000012514)	KLHL29 (ENSEEEG00000012515)	ATAD2B (ENSEEEG00000012516)	UBXN2A (ENSEEEG00000012517)	mfsd2b (ENSEEEG00000012519)	wdcp (ENSEEEG00000012523)	fkbp1b (ENSEEEG00000012524)	mmut (ENSEEEG00000012526)	runx2b (ENSEEEG00000012569)	clic5b (ENSEEEG00000012658)	mark3b (ENSEEEG00000012720) #22	daam1b (ENSEEEG00000013248)	L3HYPDH (ENSEEEG00000013262)
Clupeiformes	ANCESTRAL SPECIES	208							ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a	ENSGT00390000001660	ENSGT00940000153311.a.b.b	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #22	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00930000151053 #26	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000154045.b	ENSGT00940000164854.b.f	ENSGT00940000156116.B	ENSGT00940000154656.ob.b	ENSGT00390000002032	ENSGT00940000156452.a.a	ENSGT00940000153463.a.c.b #28	ENSGT01060000248685	ENSGT00390000002089.b #30
Denticle herring	MODERN SPECIES	5	wdr26b (ENSDCDG00000003734)	ENSDCDG00000003534	naga (ENSDCDG00000003459)	vegfab (ENSDCDG00000003439)	mrps18a (ENSDCDG00000003430)	rsph9 (ENSDCDG00000003423)	UBXN2A (ENSDCDG00000003415)	mfsd2b (ENSDCDG00000003217)	wdcp (ENSDCDG00000003187)	fkbp1b (ENSDCDG00000033957)	mmut (ENSDCDG00000033574)	opn8b (ENSDCDG00000033560)	opn8a (ENSDCDG00000033557)	runx2b (ENSDCDG00000033553)	clic5b (ENSDCDG00000033549)	mark3b (ENSDCDG00000032789) #22	ENSDCDG00000032754	ckbb (ENSDCDG00000032753) #24	xrcc3 (ENSDCDG00000032752) #26	btbd6b (ENSDCDG00000032750)	brf1b (ENSDCDG00000032728)	nudt14 (ENSDCDG00000032725)	jag2b (ENSDCDG00000032719)	esr2a (ENSDCDG00000032666)	ENSDCDG00000032659	L3HYPDH (ENSDCDG00000032657)	daam1b (ENSDCDG00000032594)	ENSDCDG00000032589	ppp1r13bb (ENSDCDG00000031797) #28	atp5mj (ENSDCDG00000031737)	ENSDCDG00000031734 #30
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000009003	ENSCHAG00000009192	ENSCHAG00000009219	coq8aa (ENSCHAG00000009242)	ITPKB (ENSCHAG00000009662)	stum (ENSCHAG00000009964)	ENSCHAG00000009978	ENSCHAG00000010001	ccl38a.4 (ENSCHAG00000010031)	ENSCHAG00000010038	ENSCHAG00000010059	ENSCHAG00000010115	opn8a (ENSCHAG00000010336)	runx2b (ENSCHAG00000010414)	clic5b (ENSCHAG00000010764)	mark3b (ENSCHAG00000010879) #22	ckbb (ENSCHAG00000013096) #24	ENSCHAG00000013202	ENSCHAG00000013223	xrcc3 (ENSCHAG00000013229) #26	brf1b (ENSCHAG00000013246)	ENSCHAG00000013429	btbd6b (ENSCHAG00000013494)	ENSCHAG00000013527	nudt14 (ENSCHAG00000013575)	jag2b (ENSCHAG00000013621)	esr2a (ENSCHAG00000014970)	ENSCHAG00000015009	L3HYPDH (ENSCHAG00000015203)	daam1b (ENSCHAG00000015238)	ppp1r13bb (ENSCHAG00000015677) #28
Osteoglossocephalai	ANCESTRAL SPECIES	17	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.a.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.a.a #22	ENSGT00950000182772.A.a.b #24	ENSGT00930000151053 #26	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000166988	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00940000159639 #27
Clupeocephala	ANCESTRAL SPECIES	17	ENSGT00940000156671	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00390000009189	ENSGT00940000156671	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478 #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.ab #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.d	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.d	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb
Tiger tail seahorse	MODERN SPECIES	43	jade1 (ENSHCOG00000000999)	asmt2 (ENSHCOG00000000989)	ENSHCOG00000000977 #19	ENSHCOG00000000041 #18	ENSHCOG00000000961	ENSHCOG00000000956	si:dkey-177p2.6 (ENSHCOG00000000950)	cdca4 (ENSHCOG00000000948)	ahsa1b (ENSHCOG00000000941)	ENSHCOG00000000923	ENSHCOG00000000918	pgrmc2 (ENSHCOG00000000911)	vps29 (ENSHCOG00000000908)	eif5 (ENSHCOG00000000904) #20	ENSHCOG00000000039 #22	ENSHCOG00000000896 #22	ENSHCOG00000000895	CKB (ENSHCOG00000000893) #24	trmt61a (ENSHCOG00000000889) #23	bag5 (ENSHCOG00000000886)	coa8 (ENSHCOG00000000883)	klc1a (ENSHCOG00000000881) #25	zfyve21 (ENSHCOG00000021085) #27	ENSHCOG00000021089	btbd6a (ENSHCOG00000021090)	ENSHCOG00000021094	dkc1 (ENSHCOG00000021099)	ENSHCOG00000021104 #12	ENSHCOG00000021106 #11	ENSHCOG00000021107 #14	ENSHCOG00000021110
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000177368	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b	ENSGT00940000156540.a
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT00390000004172	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137
Oryzias_b	ANCESTRAL SPECIES	39	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT00390000004172.c	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000177368	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b
Indian medaka	MODERN SPECIES		nsd2 (ENSOMEG00000004293)	jade1 (ENSOMEG00000004266)	asmt2 (ENSOMEG00000004237)	pgrmc2 (ENSOMEG00000004227)	ENSOMEG00000004210	ahsa1b (ENSOMEG00000004175)	cdca4 (ENSOMEG00000004162)	si:dkey-177p2.6 (ENSOMEG00000004154)	ENSOMEG00000004144	ENSOMEG00000004131	rsph3 (ENSOMEG00000004121)	exoc3l4 (ENSOMEG00000004068) #18	ENSOMEG00000004048 #19	vps29 (ENSOMEG00000004024)	eif5 (ENSOMEG00000003991) #20	mark3a (ENSOMEG00000003926) #22	ckba (ENSOMEG00000003808) #24	ENSOMEG00000003756	trmt61a (ENSOMEG00000003744) #23	bag5 (ENSOMEG00000003732)	ENSOMEG00000003724	ENSOMEG00000003712	ENSOMEG00000003705	ENSOMEG00000003684	ENSOMEG00000003587	ENSOMEG00000003562	ENSOMEG00000003544	adi1 (ENSOMEG00000003523)	trappc12 (ENSOMEG00000003492)	eipr1 (ENSOMEG00000003467)	MYT1L (ENSOMEG00000003446)
Javanese ricefish	MODERN SPECIES	2	pgrmc2 (ENSOJAG00000002146)	ENSOJAG00000001859	ENSOJAG00000001780	ahsa1b (ENSOJAG00000001755)	cdca4 (ENSOJAG00000001740)	ENSOJAG00000001730	ENSOJAG00000001707	ENSOJAG00000001696	ENSOJAG00000001679	ENSOJAG00000001663	ENSOJAG00000001650	exoc3l4 (ENSOJAG00000001638) #18	ENSOJAG00000001624 #19	vps29 (ENSOJAG00000021844)	eif5 (ENSOJAG00000021791) #20	mark3a (ENSOJAG00000021402) #22	ckba (ENSOJAG00000021350) #24	trmt61a (ENSOJAG00000021339) #23	bag5 (ENSOJAG00000021330)	coa8 (ENSOJAG00000021323)	klc1a (ENSOJAG00000021028) #25	zfyve21 (ENSOJAG00000020987) #27	BTBD6 (ENSOJAG00000020980)	brf1a (ENSOJAG00000020971)	ENSOJAG00000020956	KPNA6 (ENSOJAG00000020946)	txlna (ENSOJAG00000020891)	EIF3I (ENSOJAG00000020851)	ENSOJAG00000020824	hdac1 (ENSOJAG00000020757)	marcksl1b (ENSOJAG00000020743)
Oryzias_a	ANCESTRAL SPECIES	29	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT00390000004172	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000159639 #27	ENSGT00940000155555 #25	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137
Japanese Medaka HdrR	MODERN SPECIES	14	ENSORLG00000017954	ENSORLG00000023447	ahsa1b (ENSORLG00000017948)	cdca4 (ENSORLG00000017941)	si:dkey-177p2.6 (ENSORLG00000021887)	ENSORLG00000027786	ENSORLG00000030539	ENSORLG00000021797	ENSORLG00000024013	rsph3 (ENSORLG00000017939)	exoc3l4 (ENSORLG00000027040) #18	ENSORLG00000017937 #19	vps29 (ENSORLG00000017935)	eif5 (ENSORLG00000017930) #20	ENSORLG00000029319	mark3a (ENSORLG00000017921) #22	ckba (ENSORLG00000017908) #24	trmt61a (ENSORLG00000017903) #23	bag5 (ENSORLG00000027890)	coa8 (ENSORLG00000017900)	zfyve21 (ENSORLG00000017899) #27	klc1a (ENSORLG00000017895) #25	BTBD6 (ENSORLG00000017891)	ENSORLG00000017887	ENSORLG00000017877	ENSORLG00000027471	ENSORLG00000017864	adi1 (ENSORLG00000017862)	ENSORLG00000025112	trappc12 (ENSORLG00000017859)	eipr1 (ENSORLG00000017857)
Chinese medaka	MODERN SPECIES	185										ENSOSIG00000011269	rsph3 (ENSOSIG00000011271)	ENSOSIG00000011274 #19	vps29 (ENSOSIG00000011291)	eif5 (ENSOSIG00000011451) #20	ckba (ENSOSIG00000011460) #24	mark3a (ENSOSIG00000011462) #22	ENSOSIG00000011464	trmt61a (ENSOSIG00000011466) #23
Cyprinodontiformes	DUPLICATION
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a.c	ENSGT01030000234620.a.b.a	ENSGT00390000006996
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00960000187998	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000154656.pb
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000164564.f.a	ENSGT00940000156269.a.a	ENSGT00940000155879	ENSGT00940000157393	ENSGT00390000004927	ENSGT00550000074824
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	10	ENSXMAG00000017745	ENSXMAG00000022928 #22	ENSXMAG00000022874 #22	ENSXMAG00000022553 #22	ENSXMAG00000024346 #22	ENSXMAG00000028862	ENSXMAG00000028532	DCTN1 (ENSXMAG00000018541)	si:dkey-33c12.4 (ENSXMAG00000018535)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.3 (ENSXMAG00000018528)	mrps26 (ENSXMAG00000025028)	loxl3b (ENSXMAG00000018497)	pank2 (ENSXMAG00000018493)	ENSXMAG00000022985	ENSXMAG00000021583 #22	ENSXMAG00000029472 #22	ENSXMAG00000018489	ENSXMAG00000007459	BTBD6 (ENSXMAG00000027382)	brf1a (ENSXMAG00000018476)	zfyve21 (ENSXMAG00000025110) #27	klc1a (ENSXMAG00000018455) #25	coa8 (ENSXMAG00000018452)	bag5 (ENSXMAG00000018450)	trmt61a (ENSXMAG00000018447) #23	ENSXMAG00000028459	ckba (ENSXMAG00000018437) #24	ENSXMAG00000023192 #22	ENSXMAG00000029096 #11	tecpr2 (ENSXMAG00000018423) #14
Platyfish	MODERN SPECIES	10	ENSXMAG00000022928 #22	ENSXMAG00000022874 #22	ENSXMAG00000022553 #22	ENSXMAG00000024346 #22	ENSXMAG00000028862	ENSXMAG00000028532	DCTN1 (ENSXMAG00000018541)	si:dkey-33c12.4 (ENSXMAG00000018535)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.3 (ENSXMAG00000018528)	mrps26 (ENSXMAG00000025028)	loxl3b (ENSXMAG00000018497)	pank2 (ENSXMAG00000018493)	ENSXMAG00000022985	ENSXMAG00000021583 #22	ENSXMAG00000029472 #22	ENSXMAG00000018489	ENSXMAG00000007459	BTBD6 (ENSXMAG00000027382)	brf1a (ENSXMAG00000018476)	zfyve21 (ENSXMAG00000025110) #27	klc1a (ENSXMAG00000018455) #25	coa8 (ENSXMAG00000018452)	bag5 (ENSXMAG00000018450)	trmt61a (ENSXMAG00000018447) #23	ENSXMAG00000028459	ckba (ENSXMAG00000018437) #24	ENSXMAG00000023192 #22	ENSXMAG00000029096 #11	tecpr2 (ENSXMAG00000018423) #14	ankrd9 (ENSXMAG00000018422)
Platyfish	MODERN SPECIES	10	ENSXMAG00000018489	ENSXMAG00000029472 #22	ENSXMAG00000021583 #22	ENSXMAG00000022985	pank2 (ENSXMAG00000018493)	loxl3b (ENSXMAG00000018497)	mrps26 (ENSXMAG00000025028)	si:dkey-33c12.3 (ENSXMAG00000018528)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.4 (ENSXMAG00000018535)	DCTN1 (ENSXMAG00000018541)	ENSXMAG00000028532	ENSXMAG00000028862	ENSXMAG00000024346 #22	ENSXMAG00000022553 #22	ENSXMAG00000022874 #22	ENSXMAG00000022928 #22	ENSXMAG00000017745	ENSXMAG00000024920	ENSXMAG00000020907	sfxn5a (ENSXMAG00000005696)	emx1 (ENSXMAG00000020883)	noto (ENSXMAG00000005732)	ENSXMAG00000005736	ap5s1 (ENSXMAG00000026139)	gfra4a (ENSXMAG00000002475)	ATRN (ENSXMAG00000002433)	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)	rpia (ENSXMAG00000002395)	slc4a11 (ENSXMAG00000025385)
Platyfish	MODERN SPECIES	10	ENSXMAG00000004932	ENSXMAG00000027901	tyro3 (ENSXMAG00000004939)	lrrc57 (ENSXMAG00000013948)	ENSXMAG00000027421	srp54 (ENSXMAG00000018315)	sec23a (ENSXMAG00000018352)	ENSXMAG00000022693	ENSXMAG00000018285	mipol1 (ENSXMAG00000018388)	traf3 (ENSXMAG00000018391)	rcor1 (ENSXMAG00000018414) #13	ankrd9 (ENSXMAG00000018422)	tecpr2 (ENSXMAG00000018423) #14	ENSXMAG00000029096 #11	ENSXMAG00000023192 #22	ckba (ENSXMAG00000018437) #24	ENSXMAG00000028459	trmt61a (ENSXMAG00000018447) #23	bag5 (ENSXMAG00000018450)	coa8 (ENSXMAG00000018452)	klc1a (ENSXMAG00000018455) #25	zfyve21 (ENSXMAG00000025110) #27	brf1a (ENSXMAG00000018476)	BTBD6 (ENSXMAG00000027382)	ENSXMAG00000007459	ENSXMAG00000018489	ENSXMAG00000029472 #22	ENSXMAG00000021583 #22	ENSXMAG00000022985	pank2 (ENSXMAG00000018493)
Platyfish	MODERN SPECIES	10	ENSXMAG00000007459	ENSXMAG00000018489	ENSXMAG00000029472 #22	ENSXMAG00000021583 #22	ENSXMAG00000022985	pank2 (ENSXMAG00000018493)	loxl3b (ENSXMAG00000018497)	mrps26 (ENSXMAG00000025028)	si:dkey-33c12.3 (ENSXMAG00000018528)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.4 (ENSXMAG00000018535)	DCTN1 (ENSXMAG00000018541)	ENSXMAG00000028532	ENSXMAG00000028862	ENSXMAG00000024346 #22	ENSXMAG00000022553 #22	ENSXMAG00000022874 #22	ENSXMAG00000022928 #22	ENSXMAG00000017745	ENSXMAG00000024920	ENSXMAG00000020907	sfxn5a (ENSXMAG00000005696)	emx1 (ENSXMAG00000020883)	noto (ENSXMAG00000005732)	ENSXMAG00000005736	ap5s1 (ENSXMAG00000026139)	gfra4a (ENSXMAG00000002475)	ATRN (ENSXMAG00000002433)	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)	rpia (ENSXMAG00000002395)
Platyfish	MODERN SPECIES	10	BTBD6 (ENSXMAG00000027382)	ENSXMAG00000007459	ENSXMAG00000018489	ENSXMAG00000029472 #22	ENSXMAG00000021583 #22	ENSXMAG00000022985	pank2 (ENSXMAG00000018493)	loxl3b (ENSXMAG00000018497)	mrps26 (ENSXMAG00000025028)	si:dkey-33c12.3 (ENSXMAG00000018528)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.4 (ENSXMAG00000018535)	DCTN1 (ENSXMAG00000018541)	ENSXMAG00000028532	ENSXMAG00000028862	ENSXMAG00000024346 #22	ENSXMAG00000022553 #22	ENSXMAG00000022874 #22	ENSXMAG00000022928 #22	ENSXMAG00000017745	ENSXMAG00000024920	ENSXMAG00000020907	sfxn5a (ENSXMAG00000005696)	emx1 (ENSXMAG00000020883)	noto (ENSXMAG00000005732)	ENSXMAG00000005736	ap5s1 (ENSXMAG00000026139)	gfra4a (ENSXMAG00000002475)	ATRN (ENSXMAG00000002433)	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)
Platyfish	MODERN SPECIES	10	ENSXMAG00000029472 #22	ENSXMAG00000021583 #22	ENSXMAG00000022985	pank2 (ENSXMAG00000018493)	loxl3b (ENSXMAG00000018497)	mrps26 (ENSXMAG00000025028)	si:dkey-33c12.3 (ENSXMAG00000018528)	NANOS1 (ENSXMAG00000019985)	si:dkey-33c12.4 (ENSXMAG00000018535)	DCTN1 (ENSXMAG00000018541)	ENSXMAG00000028532	ENSXMAG00000028862	ENSXMAG00000024346 #22	ENSXMAG00000022553 #22	ENSXMAG00000022874 #22	ENSXMAG00000022928 #22	ENSXMAG00000017745	ENSXMAG00000024920	ENSXMAG00000020907	sfxn5a (ENSXMAG00000005696)	emx1 (ENSXMAG00000020883)	noto (ENSXMAG00000005732)	ENSXMAG00000005736	ap5s1 (ENSXMAG00000026139)	gfra4a (ENSXMAG00000002475)	ATRN (ENSXMAG00000002433)	ENSXMAG00000023573	EIF2AK3 (ENSXMAG00000002407)	rpia (ENSXMAG00000002395)	slc4a11 (ENSXMAG00000025385)	ENSXMAG00000024583
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	10	erh (ENSXMAG00000009197)	ENSXMAG00000009201	exd2 (ENSXMAG00000003565)	numb (ENSXMAG00000024590)	GALNT16 (ENSXMAG00000009203)	vps39 (ENSXMAG00000009235)	TMEM87A (ENSXMAG00000027481)	GANC (ENSXMAG00000009299)	capn3a (ENSXMAG00000009351)	ZNF106 (ENSXMAG00000009422)	pacc1 (ENSXMAG00000009436)	nenf (ENSXMAG00000009476)	ENSXMAG00000028996 #22	ENSXMAG00000028714 #22	ENSXMAG00000029819 #22	ENSXMAG00000026873 #22	ENSXMAG00000022454 #22	SLC39A8 (ENSXMAG00000014536)	manba (ENSXMAG00000014542)	ube2d3 (ENSXMAG00000027992)	ENSXMAG00000014586	CPXM1 (ENSXMAG00000014607)	wdr32 (ENSXMAG00000014624)	HHIPL2 (ENSXMAG00000014626)	MTARC2 (ENSXMAG00000014633)	ENSXMAG00000009952	ezra (ENSXMAG00000002495)	ENSXMAG00000021959	trip11 (ENSXMAG00000014645)	fbln5 (ENSXMAG00000014661)	TC2N (ENSXMAG00000014675)
Platyfish	MODERN SPECIES	10	ENSXMAG00000009201	exd2 (ENSXMAG00000003565)	numb (ENSXMAG00000024590)	GALNT16 (ENSXMAG00000009203)	vps39 (ENSXMAG00000009235)	TMEM87A (ENSXMAG00000027481)	GANC (ENSXMAG00000009299)	capn3a (ENSXMAG00000009351)	ZNF106 (ENSXMAG00000009422)	pacc1 (ENSXMAG00000009436)	nenf (ENSXMAG00000009476)	ENSXMAG00000028996 #22	ENSXMAG00000028714 #22	ENSXMAG00000029819 #22	ENSXMAG00000026873 #22	ENSXMAG00000022454 #22	SLC39A8 (ENSXMAG00000014536)	manba (ENSXMAG00000014542)	ube2d3 (ENSXMAG00000027992)	ENSXMAG00000014586	CPXM1 (ENSXMAG00000014607)	wdr32 (ENSXMAG00000014624)	HHIPL2 (ENSXMAG00000014626)	MTARC2 (ENSXMAG00000014633)	ENSXMAG00000009952	ezra (ENSXMAG00000002495)	ENSXMAG00000021959	trip11 (ENSXMAG00000014645)	fbln5 (ENSXMAG00000014661)	TC2N (ENSXMAG00000014675)	plek2 (ENSXMAG00000014691)
Platyfish	MODERN SPECIES	10	PAPLN (ENSXMAG00000009186)	ENSXMAG00000023994	psen1 (ENSXMAG00000009187)	erh (ENSXMAG00000009197)	ENSXMAG00000009201	exd2 (ENSXMAG00000003565)	numb (ENSXMAG00000024590)	GALNT16 (ENSXMAG00000009203)	vps39 (ENSXMAG00000009235)	TMEM87A (ENSXMAG00000027481)	GANC (ENSXMAG00000009299)	capn3a (ENSXMAG00000009351)	ZNF106 (ENSXMAG00000009422)	pacc1 (ENSXMAG00000009436)	nenf (ENSXMAG00000009476)	ENSXMAG00000028996 #22	ENSXMAG00000028714 #22	ENSXMAG00000029819 #22	ENSXMAG00000026873 #22	ENSXMAG00000022454 #22	SLC39A8 (ENSXMAG00000014536)	manba (ENSXMAG00000014542)	ube2d3 (ENSXMAG00000027992)	ENSXMAG00000014586	CPXM1 (ENSXMAG00000014607)	wdr32 (ENSXMAG00000014624)	HHIPL2 (ENSXMAG00000014626)	MTARC2 (ENSXMAG00000014633)	ENSXMAG00000009952	ezra (ENSXMAG00000002495)	ENSXMAG00000021959
Platyfish	MODERN SPECIES	10	ENSXMAG00000023994	psen1 (ENSXMAG00000009187)	erh (ENSXMAG00000009197)	ENSXMAG00000009201	exd2 (ENSXMAG00000003565)	numb (ENSXMAG00000024590)	GALNT16 (ENSXMAG00000009203)	vps39 (ENSXMAG00000009235)	TMEM87A (ENSXMAG00000027481)	GANC (ENSXMAG00000009299)	capn3a (ENSXMAG00000009351)	ZNF106 (ENSXMAG00000009422)	pacc1 (ENSXMAG00000009436)	nenf (ENSXMAG00000009476)	ENSXMAG00000028996 #22	ENSXMAG00000028714 #22	ENSXMAG00000029819 #22	ENSXMAG00000026873 #22	ENSXMAG00000022454 #22	SLC39A8 (ENSXMAG00000014536)	manba (ENSXMAG00000014542)	ube2d3 (ENSXMAG00000027992)	ENSXMAG00000014586	CPXM1 (ENSXMAG00000014607)	wdr32 (ENSXMAG00000014624)	HHIPL2 (ENSXMAG00000014626)	MTARC2 (ENSXMAG00000014633)	ENSXMAG00000009952	ezra (ENSXMAG00000002495)	ENSXMAG00000021959	trip11 (ENSXMAG00000014645)
Platyfish	MODERN SPECIES	10	psen1 (ENSXMAG00000009187)	erh (ENSXMAG00000009197)	ENSXMAG00000009201	exd2 (ENSXMAG00000003565)	numb (ENSXMAG00000024590)	GALNT16 (ENSXMAG00000009203)	vps39 (ENSXMAG00000009235)	TMEM87A (ENSXMAG00000027481)	GANC (ENSXMAG00000009299)	capn3a (ENSXMAG00000009351)	ZNF106 (ENSXMAG00000009422)	pacc1 (ENSXMAG00000009436)	nenf (ENSXMAG00000009476)	ENSXMAG00000028996 #22	ENSXMAG00000028714 #22	ENSXMAG00000029819 #22	ENSXMAG00000026873 #22	ENSXMAG00000022454 #22	SLC39A8 (ENSXMAG00000014536)	manba (ENSXMAG00000014542)	ube2d3 (ENSXMAG00000027992)	ENSXMAG00000014586	CPXM1 (ENSXMAG00000014607)	wdr32 (ENSXMAG00000014624)	HHIPL2 (ENSXMAG00000014626)	MTARC2 (ENSXMAG00000014633)	ENSXMAG00000009952	ezra (ENSXMAG00000002495)	ENSXMAG00000021959	trip11 (ENSXMAG00000014645)	fbln5 (ENSXMAG00000014661)
Platyfish	MODERN SPECIES	1	mrtfab (ENSXMAG00000009671)	ENSXMAG00000009684	desi1b (ENSXMAG00000009685)	xrcc6 (ENSXMAG00000009691)	josd1 (ENSXMAG00000021882)	ENSXMAG00000009724	EP300 (ENSXMAG00000009730)	l3mbtl2 (ENSXMAG00000009758)	chadlb (ENSXMAG00000000655)	rangap1b (ENSXMAG00000000663)	ZC3H7B (ENSXMAG00000026502)	tefa (ENSXMAG00000000678)	phf5a (ENSXMAG00000000679)	aco2 (ENSXMAG00000000683)	csdc2a (ENSXMAG00000000696)	ENSXMAG00000027223 #22	ENSXMAG00000019660	med24 (ENSXMAG00000011374)	ENSXMAG00000028761	ENSXMAG00000021866	ENSXMAG00000019659	top2a (ENSXMAG00000011303)	ENSXMAG00000011301	ENSXMAG00000028093	mki67 (ENSXMAG00000014627)	tut1 (ENSXMAG00000027272)	pyyb (ENSXMAG00000014622)	mpp2b (ENSXMAG00000014604)	ENSXMAG00000024623	ENSXMAG00000014511	itga3b (ENSXMAG00000014570)
Poecilia	ANCESTRAL SPECIES	44	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b
NAME_6	ANCESTRAL SPECIES	142	ENSGT00940000166228.d	ENSGT00940000159744.d	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000164564.f.a	ENSGT00940000156269.a.a	ENSGT00940000155879	ENSGT00940000157393	ENSGT00390000004927	ENSGT00550000074824
Amazon molly	MODERN SPECIES	614																MARK3 (ENSPFOG00000022835) #22	ckba (ENSPFOG00000007129) #24	trmt61a (ENSPFOG00000007249) #23	bag5 (ENSPFOG00000007281)	coa8 (ENSPFOG00000023033)	klc1a (ENSPFOG00000007320) #25	zfyve21 (ENSPFOG00000007862) #27	brf1a (ENSPFOG00000007864)	BTBD6 (ENSPFOG00000007869)	ENSPFOG00000007931	ENSPFOG00000008032	ENSPFOG00000008067	ENSPFOG00000008431	tyro3 (ENSPFOG00000008469)	lrrc57 (ENSPFOG00000008772)	ENSPFOG00000008813
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a.c
Aplocheiloidei	ANCESTRAL SPECIES	109												ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a.d	ENSGT00940000156540.a.c	ENSGT01030000234620.a.b.a
Mangrove rivulus	MODERN SPECIES	9	exosc2 (ENSKMAG00000017397)	ABL1 (ENSKMAG00000017451)	rab14 (ENSKMAG00000017487)	ddx54 (ENSKMAG00000017520)	tbx5a (ENSKMAG00000017563)	tbx3a (ENSKMAG00000017582)	ENSKMAG00000017611	MED13L (ENSKMAG00000017631)	MTFP1 (ENSKMAG00000017702)	lman2la (ENSKMAG00000017724)	wbp1 (ENSKMAG00000017760)	ARL3 (ENSKMAG00000017791)	ENSKMAG00000017818 #19	vps29 (ENSKMAG00000017841)	eif5 (ENSKMAG00000017862) #20	mark3a (ENSKMAG00000017897) #22	ckba (ENSKMAG00000017979) #24	trmt61a (ENSKMAG00000018005) #23	bag5 (ENSKMAG00000018016)	coa8 (ENSKMAG00000018040)	klc1a (ENSKMAG00000018084) #25	zfyve21 (ENSKMAG00000018120) #27	ENSKMAG00000018137	BTBD6 (ENSKMAG00000018157)	ENSKMAG00000018181	cfl2 (ENSKMAG00000018199)	snx6 (ENSKMAG00000018216)	psma3 (ENSKMAG00000018247)	arid4a (ENSKMAG00000018271)	timm9 (ENSKMAG00000018340)	ENSKMAG00000018354
Turquoise killifish	MODERN SPECIES	1625	Nfu_g_1_018550 (ENSNFUG00015013367)	ENSNFUG00015013358	DTD2 (ENSNFUG00015013355)	BTBD6A (ENSNFUG00015013348)	brf1a (ENSNFUG00015013317)	ENSNFUG00015013298	ENSNFUG00015011553	ZFYVE21 (ENSNFUG00015011340) #27	KLC1A (ENSNFUG00015011178) #25	ENSNFUG00015011106	coa8 (ENSNFUG00015011091)	bag5 (ENSNFUG00015011072)	VPS29 (ENSNFUG00015010997)	eif5 (ENSNFUG00015010938) #20	ENSNFUG00015010915	mark3a (ENSNFUG00015007649) #22	ckba (ENSNFUG00015007362) #24	TRMT61A (ENSNFUG00015007342) #23	exoc3l4 (ENSNFUG00015007334) #18	TNFAIP2 (ENSNFUG00015007326) #19	ENSNFUG00015007324	IGF2BP1 (ENSNFUG00015006905)	rab11fip4a (ENSNFUG00015006859)	ENSNFUG00015006846	ENSNFUG00015006845	SCPEP1 (ENSNFUG00015006385)	ENGASE (ENSNFUG00015006307)	csnk1db (ENSNFUG00015006224)	SLC16A3 (ENSNFUG00015006210)	DUS1L (ENSNFUG00015006186)	Nfu_g_1_018518 (ENSNFUG00015006158)
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00960000187998	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a	ENSGT00940000156116.A
NAME_4	ANCESTRAL SPECIES	104	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00960000187998	ENSGT01030000234620.a.b.a	ENSGT00940000158836.a.a	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a
Sheepshead minnow	MODERN SPECIES	514										ARID1B (ENSCVAG00000019547)	ENSCVAG00000000796	ZDHHC14 (ENSCVAG00000019403)	LGALS8 (ENSCVAG00000019242)	vps29 (ENSCVAG00000019203)	eif5 (ENSCVAG00000019134) #20	mark3a (ENSCVAG00000018949) #22	ckba (ENSCVAG00000018499) #24	ENSCVAG00000018435	trmt61a (ENSCVAG00000018399) #23	bag5 (ENSCVAG00000018365)	coa8 (ENSCVAG00000018335)	klc1a (ENSCVAG00000018320) #25	zfyve21 (ENSCVAG00000018197) #27	ENSCVAG00000018110	BTBD6 (ENSCVAG00000018074)	ENSCVAG00000018003	ENSCVAG00000017867	snapc1b (ENSCVAG00000017835)	dtd2 (ENSCVAG00000017787)	ENSCVAG00000017768	ENSCVAG00000017735
Mummichog	MODERN SPECIES	2356	nsd2 (ENSFHEG00000010191)	jade1 (ENSFHEG00000010222)	asmt2 (ENSFHEG00000010232)	pgrmc2 (ENSFHEG00000010241)	LARP1B (ENSFHEG00000010264)	ENSFHEG00000010280	ahsa1b (ENSFHEG00000000236)	cdca4 (ENSFHEG00000010349)	si:dkey-177p2.6 (ENSFHEG00000010364)	ENSFHEG00000010398	ENSFHEG00000010410	exoc3l4 (ENSFHEG00000010420) #18	ENSFHEG00000010441 #19	vps29 (ENSFHEG00000010482)	eif5 (ENSFHEG00000010524) #20	mark3a (ENSFHEG00000010724) #22	ENSFHEG00000010749	ckb (ENSFHEG00000010790) #24	trmt61a (ENSFHEG00000010814) #23	bag5 (ENSFHEG00000010822)	coa8 (ENSFHEG00000010832)	klc1a (ENSFHEG00000010970) #25	zfyve21 (ENSFHEG00000011042) #27	BTBD6 (ENSFHEG00000011072)	ENSFHEG00000011095	ENSFHEG00000011104	ppp2r5eb (ENSFHEG00000011187)	ENSFHEG00000011203	ENSFHEG00000011619	esr2b (ENSFHEG00000011692)	ENSFHEG00000011758
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000164564.f.a	ENSGT00940000156269.a.a	ENSGT00940000155879	ENSGT00940000157393
Poecilia	ANCESTRAL SPECIES	44	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b
NAME_6	ANCESTRAL SPECIES	142			ENSGT00940000166228.d	ENSGT00940000159744.d	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b.b #22	ENSGT00940000177368	ENSGT00940000154862.x.b.a #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000164564.f.a	ENSGT00940000156269.a.a	ENSGT00940000155879	ENSGT00940000157393
Sailfin molly	MODERN SPECIES	385											ENSPLAG00000013368	ENSPLAG00000013381	ENSPLAG00000013397 #19	vps29 (ENSPLAG00000013410)	eif5 (ENSPLAG00000013444) #20	mark3a (ENSPLAG00000013552) #22	ENSPLAG00000013569	ckba (ENSPLAG00000013587) #24	trmt61a (ENSPLAG00000013604) #23	bag5 (ENSPLAG00000013615)	coa8 (ENSPLAG00000013630)	klc1a (ENSPLAG00000013695) #25
Amazon molly	MODERN SPECIES	763			asmt2 (ENSPFOG00000019527)	pgrmc2 (ENSPFOG00000019525)	ENSPFOG00000019519	ENSPFOG00000023079	ahsa1b (ENSPFOG00000019510)	cdca4 (ENSPFOG00000019507)	si:dkey-177p2.6 (ENSPFOG00000020575)	ENSPFOG00000019505	ENSPFOG00000019502	exoc3l4 (ENSPFOG00000019501) #18	ENSPFOG00000019498 #19	vps29 (ENSPFOG00000019494)	eif5 (ENSPFOG00000019490) #20	MARK3 (ENSPFOG00000019488) #22
Guppy	MODERN SPECIES	453	jade1 (ENSPREG00000006043)	pgrmc2 (ENSPREG00000006009)	ENSPREG00000005980	ENSPREG00000005955	ENSPREG00000005946	cdca4 (ENSPREG00000005921)	ENSPREG00000005914	ahsa1b (ENSPREG00000005888)	ENSPREG00000005850	ENSPREG00000005825	exoc3l4 (ENSPREG00000005791) #18	ENSPREG00000005761 #19	vps29 (ENSPREG00000005729)	eif5 (ENSPREG00000005696) #20	ENSPREG00000005677	mark3a (ENSPREG00000005436) #22	ckba (ENSPREG00000005342) #24	trmt61a (ENSPREG00000005313) #23	bag5 (ENSPREG00000005296)	coa8 (ENSPREG00000005258)	klc1a (ENSPREG00000005178) #25	ENSPREG00000005140	BTBD6 (ENSPREG00000005120)	brf1a (ENSPREG00000005076)	ENSPREG00000004803	ENSPREG00000004729	ENSPREG00000004695	ENSPREG00000004673	ENSPREG00000004628	tyro3 (ENSPREG00000004587)	lrrc57 (ENSPREG00000004552)
Platyfish	MODERN SPECIES	10	nsd2 (ENSXMAG00000008116)	jade1 (ENSXMAG00000008136)	asmt2 (ENSXMAG00000009925)	pgrmc2 (ENSXMAG00000024645)	ENSXMAG00000008150	ENSXMAG00000022268	ahsa1b (ENSXMAG00000022100)	cdca4 (ENSXMAG00000019446)	si:dkey-177p2.6 (ENSXMAG00000008172)	ENSXMAG00000024007	ENSXMAG00000025271	exoc3l4 (ENSXMAG00000014925) #18	ENSXMAG00000014914 #19	vps29 (ENSXMAG00000024591)	eif5 (ENSXMAG00000025924) #20	mark3a (ENSXMAG00000014822) #22	arg2 (ENSXMAG00000014792)	vti1b (ENSXMAG00000014780)	rdh12 (ENSXMAG00000020818)	zfyve26 (ENSXMAG00000014723)	si:ch211-10a23.2 (ENSXMAG00000014721)	plek2 (ENSXMAG00000014691)	TC2N (ENSXMAG00000014675)	fbln5 (ENSXMAG00000014661)	trip11 (ENSXMAG00000014645)	ENSXMAG00000021959	ezra (ENSXMAG00000002495)	ENSXMAG00000009952	MTARC2 (ENSXMAG00000014633)	HHIPL2 (ENSXMAG00000014626)	wdr32 (ENSXMAG00000014624)
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A.c	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b	ENSGT00940000156540.a
Bicolor damselfish	MODERN SPECIES	355	nsd2 (ENSSPAG00000017976)	jade1 (ENSSPAG00000017957)	asmt2 (ENSSPAG00000017896)	pgrmc2 (ENSSPAG00000017885)	ENSSPAG00000017772	ENSSPAG00000017738	cdca4 (ENSSPAG00000017726)	si:dkey-177p2.6 (ENSSPAG00000017708)	ahsa1b (ENSSPAG00000017685)	ENSSPAG00000017663	ENSSPAG00000017641	exoc3l4 (ENSSPAG00000017613) #18	ENSSPAG00000017576 #19	vps29 (ENSSPAG00000017555)	eif5 (ENSSPAG00000017515) #20	mark3a (ENSSPAG00000017350) #22	ckba (ENSSPAG00000017281) #24	trmt61a (ENSSPAG00000017259) #23	bag5 (ENSSPAG00000017253)	coa8 (ENSSPAG00000017240)	klc1a (ENSSPAG00000017184) #25	zfyve21 (ENSSPAG00000017163) #27	ENSSPAG00000017149	BTBD6 (ENSSPAG00000017133)	ENSSPAG00000017116	ENSSPAG00000017104	ENSSPAG00000017094
Pomacentridae_A	ANCESTRAL SPECIES	31	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A.c	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b	ENSGT00940000156540.a
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3265																ENSAPOG00000022476 #22	CKB (ENSAPOG00000022462) #24
Spiny chromis	MODERN SPECIES	2243													ENSAPOG00000004568	vps29 (ENSAPOG00000004554)	eif5 (ENSAPOG00000004515) #20	ENSAPOG00000004468 #22
Amphiprion	ANCESTRAL SPECIES	27	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A.c	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b	ENSGT00940000156540.a
Orange clownfish	MODERN SPECIES	9	jade1 (ENSAPEG00000004283)	asmt2 (ENSAPEG00000004192)	pgrmc2 (ENSAPEG00000004176)	ENSAPEG00000004126	ENSAPEG00000004088	ahsa1b (ENSAPEG00000004042)	cdca4 (ENSAPEG00000004021)	si:dkey-177p2.6 (ENSAPEG00000004001)	ENSAPEG00000003968	ENSAPEG00000003897	ENSAPEG00000003871	exoc3l4 (ENSAPEG00000003835) #18	TNFAIP2 (ENSAPEG00000003816) #19	vps29 (ENSAPEG00000003774)	eif5 (ENSAPEG00000003714) #20	mark3a (ENSAPEG00000003620) #22	ckba (ENSAPEG00000003565) #24	trmt61a (ENSAPEG00000003541) #23	bag5 (ENSAPEG00000003511)	coa8 (ENSAPEG00000003403)	klc1a (ENSAPEG00000003369) #25	zfyve21 (ENSAPEG00000003335) #27	ENSAPEG00000003309	BTBD6 (ENSAPEG00000003260)	ENSAPEG00000003239	ENSAPEG00000003105	esr2b (ENSAPEG00000003028)	ENSAPEG00000002963	ENSAPEG00000002946	ENSAPEG00000002922	ENSAPEG00000002883
Clown anemonefish	MODERN SPECIES	2552																mark3a (ENSAOCG00000017087) #22	ckba (ENSAOCG00000017039) #24	trmt61a (ENSAOCG00000016986) #23	bag5 (ENSAOCG00000016964)	coa8 (ENSAOCG00000016952)	ENSAOCG00000016946 #25
Cichlidae	ANCESTRAL SPECIES	37	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b
Midas cichlid	MODERN SPECIES	1272	nsd2 (ENSACIG00000023914)	jade1 (ENSACIG00000023910)	asmt2 (ENSACIG00000023903)	pgrmc2 (ENSACIG00000023899)	ENSACIG00000023890	ENSACIG00000023884	ahsa1b (ENSACIG00000023880)	cdca4 (ENSACIG00000023875)	si:dkey-177p2.6 (ENSACIG00000023872)	ENSACIG00000023870	ENSACIG00000023856	ENSACIG00000023851 #19	ENSACIG00000023845 #19	vps29 (ENSACIG00000023840)	eif5 (ENSACIG00000023833) #20	mark3a (ENSACIG00000023826) #22	ENSACIG00000023824	ckba (ENSACIG00000023820) #24	trmt61a (ENSACIG00000023818) #23	bag5 (ENSACIG00000023816)	coa8 (ENSACIG00000023814)	klc1a (ENSACIG00000023809) #25	zfyve21 (ENSACIG00000023807) #27	ENSACIG00000023806	BTBD6 (ENSACIG00000023803)	ENSACIG00000023800	ENSACIG00000023797
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b
Nile tilapia	MODERN SPECIES	10	asmt2 (ENSONIG00000036240)	pgrmc2 (ENSONIG00000033876)	ENSONIG00000012386	ENSONIG00000030302	ahsa1b (ENSONIG00000012392)	cdca4 (ENSONIG00000021035)	si:dkey-177p2.6 (ENSONIG00000012393)	ENSONIG00000040212	ENSONIG00000034348	exoc3l4 (ENSONIG00000012398) #18	ENSONIG00000012400 #19	ENSONIG00000012403 #19	ENSONIG00000042609	vps29 (ENSONIG00000012406)	eif5 (ENSONIG00000012407) #20	mark3a (ENSONIG00000012410) #22	ckba (ENSONIG00000012417) #24	trmt61a (ENSONIG00000012420) #23	bag5 (ENSONIG00000012424)	coa8 (ENSONIG00000012426)	klc1a (ENSONIG00000012429) #25	zfyve21 (ENSONIG00000012439) #27	BTBD6 (ENSONIG00000001672)	brf1a (ENSONIG00000001665)	ENSONIG00000001676	esr2 (ENSONIG00000001710)	ENSONIG00000036811	gphb5 (ENSONIG00000001746)	KCNH5 (ENSONIG00000001748)	ppp2r5eb (ENSONIG00000001752)	wdr89 (ENSONIG00000020830)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a #19	ENSGT01030000234613.b.a.a.c.a.j.a.b #19	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b
Lyretail cichlid	DUPLICATION
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	299	ENSNBRG00000023846	ENSNBRG00000023837	ahsa1b (ENSNBRG00000023827)	cdca4 (ENSNBRG00000023822)	si:dkey-177p2.6 (ENSNBRG00000023817)	ENSNBRG00000023808	ENSNBRG00000023783	ENSNBRG00000023779 #19	ENSNBRG00000023772 #19	exoc3l4 (ENSNBRG00000023763) #18	ENSNBRG00000023757 #19	ENSNBRG00000023748 #19	vps29 (ENSNBRG00000023742)	eif5 (ENSNBRG00000023720) #20	ENSNBRG00000023712 #22	ENSNBRG00000023708 #22	ENSNBRG00000023706 #22	ENSNBRG00000023703	ckba (ENSNBRG00000023695) #24	trmt61a (ENSNBRG00000023686) #23	bag5 (ENSNBRG00000023682)	coa8 (ENSNBRG00000023679)	klc1a (ENSNBRG00000023670) #25	zfyve21 (ENSNBRG00000023661) #27	BTBD6 (ENSNBRG00000023655)	brf1a (ENSNBRG00000023643)	ENSNBRG00000023586	esr2b (ENSNBRG00000023185)	ENSNBRG00000022976	ENSNBRG00000022964	gphb5 (ENSNBRG00000022958)
Lyretail cichlid	MODERN SPECIES	299	ENSNBRG00000023837	ahsa1b (ENSNBRG00000023827)	cdca4 (ENSNBRG00000023822)	si:dkey-177p2.6 (ENSNBRG00000023817)	ENSNBRG00000023808	ENSNBRG00000023783	ENSNBRG00000023779 #19	ENSNBRG00000023772 #19	exoc3l4 (ENSNBRG00000023763) #18	ENSNBRG00000023757 #19	ENSNBRG00000023748 #19	vps29 (ENSNBRG00000023742)	eif5 (ENSNBRG00000023720) #20	ENSNBRG00000023712 #22	ENSNBRG00000023708 #22	ENSNBRG00000023706 #22	ENSNBRG00000023703	ckba (ENSNBRG00000023695) #24	trmt61a (ENSNBRG00000023686) #23	bag5 (ENSNBRG00000023682)	coa8 (ENSNBRG00000023679)	klc1a (ENSNBRG00000023670) #25	zfyve21 (ENSNBRG00000023661) #27	BTBD6 (ENSNBRG00000023655)	brf1a (ENSNBRG00000023643)	ENSNBRG00000023586	esr2b (ENSNBRG00000023185)	ENSNBRG00000022976	ENSNBRG00000022964	gphb5 (ENSNBRG00000022958)	KCNH5 (ENSNBRG00000022940)
Lyretail cichlid	MODERN SPECIES	299	ENSNBRG00000023857	ENSNBRG00000023846	ENSNBRG00000023837	ahsa1b (ENSNBRG00000023827)	cdca4 (ENSNBRG00000023822)	si:dkey-177p2.6 (ENSNBRG00000023817)	ENSNBRG00000023808	ENSNBRG00000023783	ENSNBRG00000023779 #19	ENSNBRG00000023772 #19	exoc3l4 (ENSNBRG00000023763) #18	ENSNBRG00000023757 #19	ENSNBRG00000023748 #19	vps29 (ENSNBRG00000023742)	eif5 (ENSNBRG00000023720) #20	ENSNBRG00000023712 #22	ENSNBRG00000023708 #22	ENSNBRG00000023706 #22	ENSNBRG00000023703	ckba (ENSNBRG00000023695) #24	trmt61a (ENSNBRG00000023686) #23	bag5 (ENSNBRG00000023682)	coa8 (ENSNBRG00000023679)	klc1a (ENSNBRG00000023670) #25	zfyve21 (ENSNBRG00000023661) #27	BTBD6 (ENSNBRG00000023655)	brf1a (ENSNBRG00000023643)	ENSNBRG00000023586	esr2b (ENSNBRG00000023185)	ENSNBRG00000022976	ENSNBRG00000022964
Haplochromini	ANCESTRAL SPECIES	42	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a #19	ENSGT01030000234613.b.a.a.c.a.j.a.b #19	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b
Haplochromini_A	ANCESTRAL SPECIES	44	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a #19	ENSGT01030000234613.b.a.a.c.a.j.a.b #19	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00940000154656.pb	ENSGT00730000111179.b	ENSGT00940000156540.a
Haplochromini_B	ANCESTRAL SPECIES	55	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.a.c.a.j.a.a #19	ENSGT01030000234613.b.a.a.c.a.j.a.b #19	ENSGT01030000234613.b.a.a.c.a.j.b #19	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Zebra mbuna	MODERN SPECIES	1101	cdca4 (ENSMZEG00005002473)	si:dkey-177p2.6 (ENSMZEG00005002460)	ENSMZEG00005002450	ENSMZEG00005002435	ENSMZEG00005002412	ENSMZEG00005002389 #19	ENSMZEG00005002356 #19	ENSMZEG00005002328 #19	exoc3l4 (ENSMZEG00005002293) #18	ENSMZEG00005002245 #19	ENSMZEG00005002188 #19	ENSMZEG00005002169 #19	ENSMZEG00005002154	vps29 (ENSMZEG00005002143)	eif5 (ENSMZEG00005002102) #20	mark3a (ENSMZEG00005001972) #22	ckba (ENSMZEG00005001937) #24	trmt61a (ENSMZEG00005001914) #23	bag5 (ENSMZEG00005001887)	coa8 (ENSMZEG00005001873)	klc1a (ENSMZEG00005001810) #25	zfyve21 (ENSMZEG00005001775) #27	BTBD6 (ENSMZEG00005001741)	brf1a (ENSMZEG00005001620)	ENSMZEG00005001584	ENSMZEG00005001573	ENSMZEG00005001558	ENSMZEG00005001544	ENSMZEG00005001446	ENSMZEG00005001424	gphb5 (ENSMZEG00005001409)
Eastern happy	MODERN SPECIES	10	ahsa1b (ENSACLG00000011869)	cdca4 (ENSACLG00000011837)	si:dkey-177p2.6 (ENSACLG00000011833)	ENSACLG00000011815	ENSACLG00000011799	ENSACLG00000011639	ENSACLG00000011602 #19	ENSACLG00000011579 #19	exoc3l4 (ENSACLG00000011561) #18	ENSACLG00000011547 #19	ENSACLG00000011544 #19	ENSACLG00000011438 #19	ENSACLG00000011198	vps29 (ENSACLG00000011186)	eif5 (ENSACLG00000011164) #20	mark3a (ENSACLG00000010884) #22	ckba (ENSACLG00000010809) #24	trmt61a (ENSACLG00000010779) #23	bag5 (ENSACLG00000010740)	coa8 (ENSACLG00000010731)	ENSACLG00000010725	klc1a (ENSACLG00000010654) #25	zfyve21 (ENSACLG00000010624) #27	BTBD6 (ENSACLG00000010608)	brf1a (ENSACLG00000010410)	ENSACLG00000009419	ENSACLG00000009410	ENSACLG00000009406	esr2b (ENSACLG00000009392)	ENSACLG00000009174	ENSACLG00000009153
P. nyererei	MODERN SPECIES	324	ENSPNYG00000017455	asmt2 (ENSPNYG00000017406)	pgrmc2 (ENSPNYG00000017389)	ENSPNYG00000017357	ENSPNYG00000017346	ahsa1b (ENSPNYG00000017307)	cdca4 (ENSPNYG00000017292)	si:dkey-177p2.6 (ENSPNYG00000017283)	ENSPNYG00000017260	ENSPNYG00000017226	ENSPNYG00000017216	ENSPNYG00000017199 #19	exoc3l4 (ENSPNYG00000017183) #18	vps29 (ENSPNYG00000017155)	eif5 (ENSPNYG00000017114) #20	mark3a (ENSPNYG00000017025) #22	trmt61a (ENSPNYG00000016989) #23	bag5 (ENSPNYG00000016976)	coa8 (ENSPNYG00000016964)	klc1a (ENSPNYG00000016935) #25	zfyve21 (ENSPNYG00000016911) #27	BTBD6 (ENSPNYG00000016891)	brf1a (ENSPNYG00000016850)	ENSPNYG00000016570	esr2b (ENSPNYG00000015437)	ENSPNYG00000015042	ENSPNYG00000015026	ENSPNYG00000014861	gphb5 (ENSPNYG00000014776)	KCNH5 (ENSPNYG00000014741)	ppp2r5eb (ENSPNYG00000014700)
Burton s mouthbrooder	MODERN SPECIES	674													exoc3l4 (ENSHBUG00000023409) #18	vps29 (ENSHBUG00000023395)	eif5 (ENSHBUG00000001036) #20	mark3a (ENSHBUG00000023278) #22	ckba (ENSHBUG00000022749) #24	ENSHBUG00000022714	trmt61a (ENSHBUG00000022709) #23	bag5 (ENSHBUG00000022695)	coa8 (ENSHBUG00000022686)	klc1a (ENSHBUG00000022665) #25	zfyve21 (ENSHBUG00000000694) #27	brf1a (ENSHBUG00000022502)	BTBD6 (ENSHBUG00000022370)
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b	ENSGT00940000156540.a
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b	ENSGT00940000156540.a
Ballan wrasse	MODERN SPECIES	340	jade1 (ENSLBEG00000005758)	asmt2 (ENSLBEG00000005718)	pgrmc2 (ENSLBEG00000005698)	ENSLBEG00000005655	ENSLBEG00000005633	ahsa1b (ENSLBEG00000005598)	cdca4 (ENSLBEG00000005583)	si:dkey-177p2.6 (ENSLBEG00000005553)	ENSLBEG00000005491	ENSLBEG00000005452	ENSLBEG00000005429	exoc3l4 (ENSLBEG00000005355) #18	ENSLBEG00000005258 #19	vps29 (ENSLBEG00000005230)	eif5 (ENSLBEG00000005184) #20	mark3a (ENSLBEG00000004943) #22	ckba (ENSLBEG00000004858) #24	trmt61a (ENSLBEG00000004835) #23	bag5 (ENSLBEG00000004794)	coa8 (ENSLBEG00000004763)
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234877	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234877	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b
Gilthead seabream	MODERN SPECIES	7	ENSSAUG00010014195	ENSSAUG00010014196	ENSSAUG00010014197	ENSSAUG00010014198	ENSSAUG00010014199	ENSSAUG00010014200	ENSSAUG00010014201	ENSSAUG00010014238	esr2b (ENSSAUG00010016030)	ENSSAUG00010016067	gphb5 (ENSSAUG00010016071)	KCNH5 (ENSSAUG00010016076)	ENSSAUG00010016114	vps29 (ENSSAUG00010016123)	eif5 (ENSSAUG00010016191) #20	mark3a (ENSSAUG00010016257) #22	ckba (ENSSAUG00010020187) #24	ENSSAUG00010020190	trmt61a (ENSSAUG00010020193) #23	bag5 (ENSSAUG00010020196)	coa8 (ENSSAUG00010020197)	klc1a (ENSSAUG00010020199) #25	zfyve21 (ENSSAUG00010020416) #27	ENSSAUG00010020422 #19	exoc3l4 (ENSSAUG00010020446) #18	ENSSAUG00010020452	ENSSAUG00010020454	si:dkey-177p2.6 (ENSSAUG00010020457)	cdca4 (ENSSAUG00010020459)	ahsa1b (ENSSAUG00010020460)	ENSSAUG00010020464
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a
Large yellow croaker	MODERN SPECIES	495	jade1 (ENSLCRG00005008961)	asmt2 (ENSLCRG00005008960)	pgrmc2 (ENSLCRG00005008958)	ENSLCRG00005008789	ENSLCRG00005008787	ahsa1b (ENSLCRG00005008785)	cdca4 (ENSLCRG00005008784)	si:dkey-177p2.6 (ENSLCRG00005008783)	ENSLCRG00005008782	exoc3l4 (ENSLCRG00005008774) #18	ENSLCRG00005008764 #19	ENSLCRG00005008763	vps29 (ENSLCRG00005008758)	ENSLCRG00005008756	eif5 (ENSLCRG00005008753) #20	MARK3 (ENSLCRG00005008748) #22	ENSLCRG00005008747	ckba (ENSLCRG00005008742) #24	trmt61a (ENSLCRG00005008741) #23	bag5 (ENSLCRG00005008740)	coa8 (ENSLCRG00005008739)	klc1a (ENSLCRG00005008412) #25	zfyve21 (ENSLCRG00005008399) #27	ube2d3 (ENSLCRG00005007924)	ENSLCRG00005007913	CPXM1 (ENSLCRG00005007857)	wdr32 (ENSLCRG00005007848)	HHIPL2 (ENSLCRG00005007842)	MTARC2 (ENSLCRG00005007840)	ENSLCRG00005007839	ezra (ENSLCRG00005007838)
European seabass	MODERN SPECIES	2	nsd2 (ENSDLAG00005024506)	jade1 (ENSDLAG00005024607)	asmt2 (ENSDLAG00005024622)	pgrmc2 (ENSDLAG00005033902)	ENSDLAG00005024642	ENSDLAG00005004153	ENSDLAG00005028608	ENSDLAG00005027228	ENSDLAG00005032534	ENSDLAG00005004265	ENSDLAG00005004281 #18	ENSDLAG00005018914 #19	ENSDLAG00005033435	ENSDLAG00005004580	EIF5 (ENSDLAG00005004663) #20	mark3a (ENSDLAG00005004906) #22	ENSDLAG00005008767	ckba (ENSDLAG00005008698) #24	trmt61a (ENSDLAG00005008771) #23	ENSDLAG00005034500	bag5 (ENSDLAG00005026601)	klc1a (ENSDLAG00005008793) #25	ENSDLAG00005005912	ZFYVE21 (ENSDLAG00005032163) #27	ENSDLAG00005029934	ENSDLAG00005033978	ENSDLAG00005009101	ENSDLAG00005032036	ENSDLAG00005027269	ENSDLAG00005009198	esr2b (ENSDLAG00005010895)
Perciformes	ANCESTRAL SPECIES	12	ENSGT00950000183167.a.a	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00950000183167.a.a	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000160366	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Channel bull blenny	MODERN SPECIES	14	letm1 (ENSCGOG00000022073)	nsd2 (ENSCGOG00000021958)	jade1 (ENSCGOG00000021944)	asmt2 (ENSCGOG00000021940)	pgrmc2 (ENSCGOG00000021936)	ENSCGOG00000021921	ENSCGOG00000021917	ahsa1b (ENSCGOG00000021892)	cdca4 (ENSCGOG00000021889)	ENSCGOG00000021887	ENSCGOG00000021885	ENSCGOG00000021883	TNFAIP2 (ENSCGOG00000021878) #19	vps29 (ENSCGOG00000021863)	eif5 (ENSCGOG00000021717) #20	mark3a (ENSCGOG00000020496) #22	ENSCGOG00000020425	ckba (ENSCGOG00000020388) #24	trmt61a (ENSCGOG00000020384) #23	bag5 (ENSCGOG00000020382)	coa8 (ENSCGOG00000020378)	klc1a (ENSCGOG00000020000) #25	zfyve21 (ENSCGOG00000019949) #27	BTBD6 (ENSCGOG00000019943)	brf1a (ENSCGOG00000019939)
Pike perch	MODERN SPECIES	53	jade1 (ENSSLUG00000022478)	asmt2 (ENSSLUG00000022489)	pgrmc2 (ENSSLUG00000022500)	ENSSLUG00000022505	ENSSLUG00000022516	ENSSLUG00000022557	ahsa1b (ENSSLUG00000022566)	cdca4 (ENSSLUG00000022582)	si:dkey-177p2.6 (ENSSLUG00000022587)	ENSSLUG00000022591	ENSSLUG00000022602	exoc3l4 (ENSSLUG00000022607) #18	TNFAIP2 (ENSSLUG00000022625) #19	vps29 (ENSSLUG00000008952)	eif5 (ENSSLUG00000008983) #20	mark3a (ENSSLUG00000009221) #22	ckba (ENSSLUG00000012192) #24	ENSSLUG00000012214	trmt61a (ENSSLUG00000012219) #23	bag5 (ENSSLUG00000012224)	coa8 (ENSSLUG00000012227)	klc1a (ENSSLUG00000012286) #25	zfyve21 (ENSSLUG00000013198) #27	brf1a (ENSSLUG00000013202)	BTBD6 (ENSSLUG00000013209)	ENSSLUG00000013338	esr2b (ENSSLUG00000017280)	ENSSLUG00000017678	gphb5 (ENSSLUG00000017692)	ldah (ENSSLUG00000017698)	APOB (ENSSLUG00000017723)
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000159880	ENSGT00950000183167.a.a	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00940000180336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a	ENSGT00390000006996
Stickleback	MODERN SPECIES	15	asmt2 (ENSGACG00000004587)	ENSGACG00000004598	pgrmc2 (ENSGACG00000004602)	ENSGACG00000004609	ahsa1b (ENSGACG00000004625)	cdca4 (ENSGACG00000004663)	si:dkey-177p2.6 (ENSGACG00000004666)	ENSGACG00000004669	ENSGACG00000004674	exoc3l4 (ENSGACG00000004676) #18	ENSGACG00000004683 #19	ENSGACG00000004692 #19	ENSGACG00000004696	vps29 (ENSGACG00000004700)	eif5 (ENSGACG00000004730) #20	mark3a (ENSGACG00000004742) #22	ckba (ENSGACG00000004758) #24	trmt61a (ENSGACG00000004779) #23	bag5 (ENSGACG00000004786)	coa8 (ENSGACG00000004787)	klc1a (ENSGACG00000004792) #25	zfyve21 (ENSGACG00000004809) #27	ENSGACG00000004813	ENSGACG00000004815	ENSGACG00000004818	brf1a (ENSGACG00000004823)	BTBD6 (ENSGACG00000004835)	ENSGACG00000004847	ap5s1 (ENSGACG00000004849)	CDC25B (ENSGACG00000004851)	noto (ENSGACG00000004856)
Lumpfish	MODERN SPECIES	14	g2e3 (ENSCLMG00005009038)	jade1 (ENSCLMG00005009036)	asmt2 (ENSCLMG00005008932)	pgrmc2 (ENSCLMG00005008930)	ENSCLMG00005008928	ahsa1b (ENSCLMG00005008924)	cdca4 (ENSCLMG00005008922)	ENSCLMG00005008921	ENSCLMG00005008916	ENSCLMG00005008898	ENSCLMG00005008897	exoc3l4 (ENSCLMG00005008896) #18	vps29 (ENSCLMG00005008894)	eif5 (ENSCLMG00005008893) #20	ENSCLMG00005008892	mark3a (ENSCLMG00005008182) #22	ENSCLMG00005008177	ckba (ENSCLMG00005008062) #24	trmt61a (ENSCLMG00005008060) #23	bag5 (ENSCLMG00005008059)	coa8 (ENSCLMG00005008058)	klc1a (ENSCLMG00005007934) #25	zfyve21 (ENSCLMG00005007913) #27	BTBD6 (ENSCLMG00005007909)	brf1a (ENSCLMG00005007908)	ENSCLMG00005007907	ENSCLMG00005007906	ENSCLMG00005007567	esr2b (ENSCLMG00005006859)	ENSCLMG00005006844	ENSCLMG00005006843
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00990000210253	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a	ENSGT00390000006996
Tetraodon	MODERN SPECIES	1	ENSTNIG00000006744	foxi2 (ENSTNIG00000003048)	fgfr3 (ENSTNIG00000012404)	letm1 (ENSTNIG00000012403)	nsd2 (ENSTNIG00000012402)	jade1 (ENSTNIG00000012401)	asmt2 (ENSTNIG00000012400)	pgrmc2 (ENSTNIG00000012399)	ENSTNIG00000012398	ahsa1b (ENSTNIG00000012397)	cdca4 (ENSTNIG00000012396)	exoc3l4 (ENSTNIG00000000979) #18	ENSTNIG00000000514 #19	vps29 (ENSTNIG00000012395)	eif5 (ENSTNIG00000012394) #20	mark3a (ENSTNIG00000012393) #22	ckba (ENSTNIG00000012392) #24	trmt61a (ENSTNIG00000012391) #23	bag5 (ENSTNIG00000012390)	coa8 (ENSTNIG00000012389)	klc1a (ENSTNIG00000012388) #25	zfyve21 (ENSTNIG00000012387) #27	ENSTNIG00000012386	BTBD6 (ENSTNIG00000012385)	ENSTNIG00000000736	ENSTNIG00000012384	ENSTNIG00000012383	esr2b (ENSTNIG00000012382)	ENSTNIG00000012381	gphb5 (ENSTNIG00000012380)	KCNH5 (ENSTNIG00000012379)
Fugu	MODERN SPECIES	11	jade1 (ENSTRUG00000005254)	pgrmc2 (ENSTRUG00000022501)	ENSTRUG00000005612	ENSTRUG00000023154	ahsa1b (ENSTRUG00000022592)	cdca4 (ENSTRUG00000022645)	si:dkey-177p2.6 (ENSTRUG00000020492)	ENSTRUG00000030284	ENSTRUG00000027669	ENSTRUG00000029360	ENSTRUG00000024591 #18	ENSTRUG00000006434 #19	ENSTRUG00000029891	vps29 (ENSTRUG00000021451)	eif5 (ENSTRUG00000006600) #20	mark3a (ENSTRUG00000006908) #22	ENSTRUG00000031698	ckba (ENSTRUG00000032894) #24	ENSTRUG00000030920	ckba (ENSTRUG00000007663) #24	trmt61a (ENSTRUG00000007942) #23	bag5 (ENSTRUG00000021724)	coa8 (ENSTRUG00000008026)	klc1a (ENSTRUG00000008089) #25	ENSTRUG00000026919	zfyve21 (ENSTRUG00000021037) #27	BTBD6 (ENSTRUG00000008962)	brf1a (ENSTRUG00000008740)	esr2b (ENSTRUG00000006761)	ENSTRUG00000030125	ENSTRUG00000024118
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a
Carangaria	ANCESTRAL SPECIES	10	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b.t	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Tongue sole	MODERN SPECIES		letm1 (ENSCSEG00000013635)	nsd2 (ENSCSEG00000013567)	jade1 (ENSCSEG00000013541)	pgrmc2 (ENSCSEG00000013533)	ENSCSEG00000013519	ENSCSEG00000013509	ahsa1b (ENSCSEG00000013438)	cdca4 (ENSCSEG00000013426)	si:dkey-177p2.6 (ENSCSEG00000013418)	ENSCSEG00000013411	ENSCSEG00000013406	exoc3l4 (ENSCSEG00000013401) #18	ENSCSEG00000013393 #19	vps29 (ENSCSEG00000013380)	eif5 (ENSCSEG00000013347) #20	mark3a (ENSCSEG00000013207) #22	ENSCSEG00000013191	ckba (ENSCSEG00000013174) #24	trmt61a (ENSCSEG00000013165) #23	bag5 (ENSCSEG00000013150)	coa8 (ENSCSEG00000013144)	klc1a (ENSCSEG00000013113) #25	zfyve21 (ENSCSEG00000013100) #27	BTBD6 (ENSCSEG00000013091)	brf1a (ENSCSEG00000013067)	ENSCSEG00000013002	egln3 (ENSCSEG00000012988)	NPAS3 (ENSCSEG00000012970)	AKAP6 (ENSCSEG00000012957)	ARHGAP5 (ENSCSEG00000012946)	nubpl (ENSCSEG00000012929)
Turbot	MODERN SPECIES	8	ENSSMAG00000006841	fgfr3 (ENSSMAG00000006801)	letm1 (ENSSMAG00000006721)	nsd2 (ENSSMAG00000006581)	jade1 (ENSSMAG00000006505)	asmt2 (ENSSMAG00000006433)	pgrmc2 (ENSSMAG00000006418)	ENSSMAG00000006347	ENSSMAG00000006294	ENSSMAG00000034451	ENSSMAG00000006250	ENSSMAG00000024708	ENSSMAG00000006093 #19	ENSSMAG00000006072	EIF5 (ENSSMAG00000006036) #20	mark3a (ENSSMAG00000005737) #22	ENSSMAG00000006025	ckba (ENSSMAG00000005705) #24	trmt61a (ENSSMAG00000005682) #23	bag5 (ENSSMAG00000005674)	coa8 (ENSSMAG00000005663)	klc1a (ENSSMAG00000005563) #25	ENSSMAG00000005543 #27	ENSSMAG00000034872	ENSSMAG00000005510	ENSSMAG00000005498	ENSSMAG00000005467	esr2b (ENSSMAG00000003150)	ENSSMAG00000003011	gphb5 (ENSSMAG00000031569)	ENSSMAG00000035911
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966	ENSGT00730000111179.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	11																mark3a (ENSLCAG00010004972) #22	ckba (ENSLCAG00010004985) #24	ENSLCAG00010005020	trmt61a (ENSLCAG00010005023) #23	bag5 (ENSLCAG00010005026)	coa8 (ENSLCAG00010005039)	klc1a (ENSLCAG00010005052) #25	ENSLCAG00010005077 #27	ENSLCAG00010005079	ENSLCAG00010005082
Barramundi perch	MODERN SPECIES	1050															eif5 (ENSLCAG00010008983) #20	ENSLCAG00010008997 #22
Seriola	ANCESTRAL SPECIES	3	ENSGT00940000157429.d	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT01100000263513.a.a.b.b.b.a.a.a.c	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00940000176966
Greater amberjack	MODERN SPECIES	62	nsd2 (ENSSDUG00000004050)	jade1 (ENSSDUG00000004118)	asmt2 (ENSSDUG00000004145)	pgrmc2 (ENSSDUG00000004171)	ENSSDUG00000004182	ENSSDUG00000004235	ahsa1b (ENSSDUG00000004251)	cdca4 (ENSSDUG00000004270)	si:dkey-177p2.6 (ENSSDUG00000004283)	ENSSDUG00000004293	ENSSDUG00000004323	exoc3l4 (ENSSDUG00000004344) #18	ENSSDUG00000004423 #19	vps29 (ENSSDUG00000004442)	eif5 (ENSSDUG00000004467) #20	mark3a (ENSSDUG00000004553) #22	ckba (ENSSDUG00000004767) #24	ENSSDUG00000004832	trmt61a (ENSSDUG00000004840) #23	coa8 (ENSSDUG00000004864)	bag5 (ENSSDUG00000004877)	klc1a (ENSSDUG00000004886) #25	zfyve21 (ENSSDUG00000004918) #27	ENSSDUG00000004960	brf1a (ENSSDUG00000005014)	BTBD6 (ENSSDUG00000005135)	ENSSDUG00000005167	esr2b (ENSSDUG00000005328)	ENSSDUG00000005366	ENSSDUG00000005403	ENSSDUG00000005418
Yellowtail amberjack	MODERN SPECIES	2905			asmt2 (ENSSLDG00000014667)	pgrmc2 (ENSSLDG00000014643)	LARP1B (ENSSLDG00000014613)	ENSSLDG00000014592	ahsa1b (ENSSLDG00000014565)	cdca4 (ENSSLDG00000014555)	si:dkey-177p2.6 (ENSSLDG00000014543)	ENSSLDG00000014518	ENSSLDG00000014497	exoc3l4 (ENSSLDG00000014442) #18	ENSSLDG00000014336 #19	vps29 (ENSSLDG00000014317)	eif5 (ENSSLDG00000014272) #20	mark3a (ENSSLDG00000014225) #22	ENSSLDG00000014211	ckba (ENSSLDG00000014183) #24	trmt61a (ENSSLDG00000014160) #23	bag5 (ENSSLDG00000014145)	coa8 (ENSSLDG00000014128)	klc1a (ENSSLDG00000014091) #25	zfyve21 (ENSSLDG00000014052) #27	ENSSLDG00000014003	BTBD6 (ENSSLDG00000013981)	brf1a (ENSSLDG00000013937)	ENSSLDG00000013869	esr2b (ENSSLDG00000009163)
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Zig-zag eel	MODERN SPECIES	14	pgrmc2 (ENSMAMG00000000082)	ENSMAMG00000000081	ENSMAMG00000000080	ENSMAMG00000026494	ENSMAMG00000000078	ENSMAMG00000000077	ENSMAMG00000000076	ENSMAMG00000000074	ENSMAMG00000000075	ENSMAMG00000000073	ENSMAMG00000025617	ENSMAMG00000000072 #18	ENSMAMG00000000068 #19	ENSMAMG00000000067	EIF5 (ENSMAMG00000000066) #20	mark3a (ENSMAMG00000000065) #22	ENSMAMG00000000064	ckba (ENSMAMG00000000063) #24	trmt61a (ENSMAMG00000000062) #23	bag5 (ENSMAMG00000000061)	coa8 (ENSMAMG00000000060)	klc1a (ENSMAMG00000000059) #25	ENSMAMG00000000058 #27	ENSMAMG00000000057	ENSMAMG00000000056	ENSMAMG00000000054	esr2b (ENSMAMG00000000053)	ENSMAMG00000000052	ENSMAMG00000000050	ENSMAMG00000000049	gphb5 (ENSMAMG00000000048)
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000158247	ENSGT00940000166228	ENSGT00940000159744	ENSGT00940000154718	ENSGT00390000012424.b	ENSGT00940000155144.n	ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT01050000245132	ENSGT00390000012669	ENSGT00390000016478 #20	ENSGT00940000154862.x.b #22	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Climbing perch	MODERN SPECIES	13	jade1 (ENSATEG00000017984)	asmt2 (ENSATEG00000017902)	pgrmc2 (ENSATEG00000017889)	ENSATEG00000017849	ENSATEG00000028173	ENSATEG00000017803	ENSATEG00000017795	ENSATEG00000017781	ENSATEG00000017717	ENSATEG00000017681	ENSATEG00000017664	ENSATEG00000017628 #18	ENSATEG00000017616 #19	ENSATEG00000017542	EIF5 (ENSATEG00000017486) #20	mark3a (ENSATEG00000017350) #22	ENSATEG00000017323	ckba (ENSATEG00000017305) #24	trmt61a (ENSATEG00000017286) #23	bag5 (ENSATEG00000017272)	coa8 (ENSATEG00000029055)	klc1a (ENSATEG00000017146) #25	KLC1 (ENSATEG00000025754) #25	ENSATEG00000017116 #27	ENSATEG00000017087	ENSATEG00000017067	ENSATEG00000017008	esr2b (ENSATEG00000016954)	ENSATEG00000016899	ENSATEG00000030096	gphb5 (ENSATEG00000016850)
Siamese fighting fish	MODERN SPECIES	12	asmt2 (ENSBSLG00000022842)	pgrmc2 (ENSBSLG00000022883)	LARP1B (ENSBSLG00000022931)	ENSBSLG00000023136	ahsa1b (ENSBSLG00000023153)	cdca4 (ENSBSLG00000023230)	si:dkey-177p2.6 (ENSBSLG00000023234)	ENSBSLG00000023237	ENSBSLG00000023246	exoc3l4 (ENSBSLG00000023256) #18	ENSBSLG00000023276 #19	ENSBSLG00000023285 #19	ENSBSLG00000023308	vps29 (ENSBSLG00000023314)	eif5 (ENSBSLG00000023334) #20	mark3a (ENSBSLG00000023410) #22	ckba (ENSBSLG00000024470) #24	trmt61a (ENSBSLG00000024498) #23	bag5 (ENSBSLG00000024519)	coa8 (ENSBSLG00000024527)	klc1a (ENSBSLG00000024546) #25	zfyve21 (ENSBSLG00000024728) #27	ENSBSLG00000024753	ENSBSLG00000024759	pank2 (ENSBSLG00000024767)	KLHL28 (ENSBSLG00000024777)	ENSBSLG00000024785	ccdc28b (ENSBSLG00000024789)	tmem39b (ENSBSLG00000024792)	khdrbs1a (ENSBSLG00000024799)	zbtb8os (ENSBSLG00000024811)
Pinecone sodierfish	MODERN SPECIES	14	letm1 (ENSMMDG00005015316)	nsd2 (ENSMMDG00005014727)	jade1 (ENSMMDG00005014709)	asmt2 (ENSMMDG00005014707)	pgrmc2 (ENSMMDG00005014706)	ENSMMDG00005014699	ENSMMDG00005014698	ahsa1b (ENSMMDG00005014695)	cdca4 (ENSMMDG00005014694)	si:dkey-177p2.6 (ENSMMDG00005014693)	ENSMMDG00005014691	ENSMMDG00005014688	ENSMMDG00005014686 #19	vps29 (ENSMMDG00005014685)	eif5 (ENSMMDG00005014680) #20	mark3a (ENSMMDG00005014673) #22	ENSMMDG00005014671	ckba (ENSMMDG00005014660) #24	trmt61a (ENSMMDG00005014654) #23	bag5 (ENSMMDG00005014652)	coa8 (ENSMMDG00005014651)	klc1a (ENSMMDG00005014608) #25	zfyve21 (ENSMMDG00005014592) #27	BTBD6 (ENSMMDG00005014588)	brf1a (ENSMMDG00005014581)	ENSMMDG00005014008	ENSMMDG00005013989	esr2b (ENSMMDG00005013970)	ENSMMDG00005013887	gphb5 (ENSMMDG00005013879)	ENSMMDG00005013877
Cod	MODERN SPECIES	18	ENSGMOG00000014535	snx6 (ENSGMOG00000014508)	traf3 (ENSGMOG00000014251)	rcor1 (ENSGMOG00000014282) #13	ankrd9 (ENSGMOG00000030360)	tecpr2 (ENSGMOG00000014581) #14	ENSGMOG00000034587 #11	ENSGMOG00000008146 #12	ENSGMOG00000028630	ENSGMOG00000017277	ENSGMOG00000023641	ENSGMOG00000034326	ENSGMOG00000036688	ENSGMOG00000010032	EIF5 (ENSGMOG00000010039) #20	mark3a (ENSGMOG00000010044) #22	ENSGMOG00000028956	ckba (ENSGMOG00000003005) #24	trmt61a (ENSGMOG00000011395) #23	bag5 (ENSGMOG00000028560)	coa8 (ENSGMOG00000002615)	klc1a (ENSGMOG00000000849) #25	ENSGMOG00000035589 #27	ENSGMOG00000018967	ENSGMOG00000018260	esr2b (ENSGMOG00000034890)	ENSGMOG00000032367	gphb5 (ENSGMOG00000027209)	KCNH5 (ENSGMOG00000027666)	ppp2r5eb (ENSGMOG00000009392)	wdr89 (ENSGMOG00000022613)
Protacanthopterygii	ANCESTRAL SPECIES	92	ENSGT00940000160562	ENSGT00940000156406.b	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922	ENSGT00390000005826.a.b.h.a	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b	ENSGT00940000168728	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.f #20	ENSGT00940000154862.x.b #22	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000164854.a	ENSGT00940000156116.A	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a	ENSGT01030000234620.a.b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	631												ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e #18	ENSGT01030000234613.b.a.a.c.a.n #19	ENSGT00390000016478.f.b #20	ENSGT00940000154862.x.b.i #22	ENSGT00950000182772.A.a.b.`b.a.i #24	ENSGT00940000154239.a.d #23	ENSGT00940000158888.n	ENSGT00940000155555.c.a #25	ENSGT00940000159639.d #27	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b
Huchen	MODERN SPECIES	635												ENSHHUG00000037639	ENSHHUG00000037627 #18	ENSHHUG00000037599 #19	eif5 (ENSHHUG00000037562) #20	mark3a (ENSHHUG00000037478) #22	ENSHHUG00000037475	ckba (ENSHHUG00000037377) #24	trmt61a (ENSHHUG00000037342) #23	bag5 (ENSHHUG00000037338)	klc1a (ENSHHUG00000037137) #25	zfyve21 (ENSHHUG00000037127) #27	BTBD6 (ENSHHUG00000037096)	brf1a (ENSHHUG00000037069)	ENSHHUG00000036781
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e #18	ENSGT01030000234613.b.a.a.c.a.n #19	ENSGT00390000016478.f.b #20	ENSGT00940000154862.x.b.i #22	ENSGT00950000182772.A.a.b.`b.a.i #24	ENSGT00940000154239.a.d #23	ENSGT00940000158888.n	ENSGT00940000155555.c.a #25	ENSGT00940000159639.d #27	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b	ENSGT01100000263556.a.a.q.d.r.b	ENSGT00940000164866.c	ENSGT00940000179359.a.b.a.b	ENSGT00940000156774.n.a	ENSGT00940000158220.bb
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e #18	ENSGT01030000234613.b.a.a.c.a.n #19	ENSGT00390000016478.f.b #20	ENSGT00940000154862.x.b.i #22	ENSGT00950000182772.A.a.b.`b.a.i #24	ENSGT00940000154239.a.d #23	ENSGT00940000158888.n	ENSGT00940000155555.c.a #25	ENSGT00940000159639.d #27	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b	ENSGT01030000234620.a.b.a.j	ENSGT00390000006996	ENSGT00940000165332.B	ENSGT00940000164866.c	ENSGT00940000179359.a.b.a.b
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000032357	cdc5l (ENSOMYG00000030797)	ENSOMYG00000047855	ENSOMYG00000059970	hao1 (ENSOMYG00000033541)	ENSOMYG00000033526	PLCB1 (ENSOMYG00000033338)	ENSOMYG00000055460	ENSOMYG00000051000	ENSOMYG00000033086	ENSOMYG00000033078	ENSOMYG00000048291	ENSOMYG00000033053 #18	ENSOMYG00000033025 #19	if5 (ENSOMYG00000032972) #20	mark3a (ENSOMYG00000032737) #22	ENSOMYG00000032631	ckba (ENSOMYG00000032605) #24	trmt61a (ENSOMYG00000032592) #23	bag5 (ENSOMYG00000032582)	klc1a (ENSOMYG00000032038) #25	ZFYVE21 (ENSOMYG00000031706) #27	ENSOMYG00000020798	ENSOMYG00000069616	ENSOMYG00000031659	ENSOMYG00000030990	ENSOMYG00000027283	gphb5 (ENSOMYG00000026346)	ppp2r5eb (ENSOMYG00000026037)	ENSOMYG00000074847	ENSOMYG00000075959
Oncorhynchus_a	ANCESTRAL SPECIES	177													ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e #18	ENSGT01030000234613.b.a.a.c.a.n #19	ENSGT00940000154862.x.b.i #22	ENSGT00950000182772.A.a.b.`b.a.i #24	ENSGT00990000209766.a	ENSGT00940000154239.a.d #23	ENSGT00940000158888.n	ENSGT00940000155555.c.a #25	ENSGT00940000159639.d #27	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b	ENSGT01030000234620.a.b.a.j
Coho salmon	MODERN SPECIES	5	supt3h (ENSOKIG00005015131)	cdc5l (ENSOKIG00005015194)	napba (ENSOKIG00005015345)	ENSOKIG00005015424	hao1 (ENSOKIG00005015450)	ENSOKIG00005015510	PLCB1 (ENSOKIG00005015567)	ENSOKIG00005015993	CDCA4 (ENSOKIG00005015998)	ENSOKIG00005016003	ENSOKIG00005016011	ENSOKIG00005016015	ENSOKIG00005016037 #18	ENSOKIG00005016057 #19	EIF5 (ENSOKIG00005016088) #20	mark3a (ENSOKIG00005016189) #22	ckba (ENSOKIG00005016475) #24	ENSOKIG00005016505	trmt61a (ENSOKIG00005016507) #23	bag5 (ENSOKIG00005016518)	klc1a (ENSOKIG00005016566) #25	zfyve21 (ENSOKIG00005016825) #27	ENSOKIG00005016908	BTBD6 (ENSOKIG00005016965)	ENSOKIG00005017063	ESR2 (ENSOKIG00005017780)	gphb5 (ENSOKIG00005020555)	ppp2r5eb (ENSOKIG00005020584)	ENSOKIG00005020792	ENSOKIG00005020797	ENSOKIG00005020805
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	42	ENSOTSG00005036733	ENSOTSG00005036776	clic5a (ENSOTSG00005036779)	ENSOTSG00005036780	supt3h (ENSOTSG00005036806)	cdc5l (ENSOTSG00005036846)	ENSOTSG00005036879	ENSOTSG00005037004	hao1 (ENSOTSG00005037005)	ENSOTSG00005037006	PLCB1 (ENSOTSG00005037010)	CDCA4 (ENSOTSG00005037683)	ENSOTSG00005037684	ENSOTSG00005037685 #18	ENSOTSG00005037689 #19	mark3a (ENSOTSG00005037697) #22	ckba (ENSOTSG00005039214) #24	ENSOTSG00005039219	trmt61a (ENSOTSG00005039223) #23	bag5 (ENSOTSG00005039229)	klc1a (ENSOTSG00005039266) #25	zfyve21 (ENSOTSG00005039627) #27	brf1a (ENSOTSG00005039639)	BTBD6 (ENSOTSG00005039696)	ENSOTSG00005039729	ENSOTSG00005039744	ENSOTSG00005039745
Chinook salmon	MODERN SPECIES	2934	XKR6 (ENSOTSG00005033469)	clic5a (ENSOTSG00005033471)	ENSOTSG00005033473	supt3h (ENSOTSG00005033498)	cdc5l (ENSOTSG00005033501)	napba (ENSOTSG00005033560)	ENSOTSG00005033581	hao1 (ENSOTSG00005033582)	ENSOTSG00005033590	PLCB1 (ENSOTSG00005033596)	CDCA4 (ENSOTSG00005034643)	ENSOTSG00005034644	ENSOTSG00005034646 #18	ENSOTSG00005034647 #19	eif5 (ENSOTSG00005034654) #20	mark3a (ENSOTSG00005034676) #22	ckba (ENSOTSG00005035955) #24	ENSOTSG00005035959	trmt61a (ENSOTSG00005035961) #23	bag5 (ENSOTSG00005035964)	klc1a (ENSOTSG00005035976) #25	zfyve21 (ENSOTSG00005036164) #27	brf1a (ENSOTSG00005036171)	BTBD6 (ENSOTSG00005036207)	ENSOTSG00005036208	ENSOTSG00005036241	ENSOTSG00005037130	gphb5 (ENSOTSG00005037140)	ppp2r5eb (ENSOTSG00005037148)	afg3l2 (ENSOTSG00005037260)	faim2a (ENSOTSG00005037419)
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e #18	ENSGT01030000234613.b.a.a.c.a.n #19	ENSGT00390000016478.f.b #20	ENSGT00940000154862.x.b.i #22	ENSGT00950000182772.A.a.b.`b.a.i #24	ENSGT00990000209766.a	ENSGT00940000154239.a.d #23	ENSGT00940000158888.n	ENSGT00940000155555.c.a #25	ENSGT00940000159639.d #27	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b	ENSGT00940000156540.a.g	ENSGT01030000234620.a.b.a.j	ENSGT00390000006996	ENSGT00940000165332.B
Atlantic salmon	MODERN SPECIES	28	clic5a (ENSSSAG00000002585)	ENSSSAG00000002568	ENSSSAG00000002562	cdc5l (ENSSSAG00000002525)	ENSSSAG00000105039	ENSSSAG00000093293	ENSSSAG00000002416	ENSSSAG00000103947	ENSSSAG00000108826	ENSSSAG00000100817	ENSSSAG00000116630	ENSSSAG00000002298 #18	ENSSSAG00000002276 #19	EIF5 (ENSSSAG00000002230) #20	ckba (ENSSSAG00000070110) #24	MARK3 (ENSSSAG00000070224) #22	trm61 (ENSSSAG00000070099) #23	BAG5 (ENSSSAG00000121302)	klc1a (ENSSSAG00000058753) #25	ZFYVE21 (ENSSSAG00000003314) #27	ENSSSAG00000058245	ENSSSAG00000057905	ENSSSAG00000086126	ENSSSAG00000100471	ENSSSAG00000053270	gphb5 (ENSSSAG00000053262)	KCNH5 (ENSSSAG00000088169)	2a5e (ENSSSAG00000044391)	wdr89 (ENSSSAG00000102703)	ENSSSAG00000086992	ENSSSAG00000044215
River trout	MODERN SPECIES	17	cdc5l (ENSSTUG00000033559)	ENSSTUG00000033995	ENSSTUG00000034159	hao1 (ENSSTUG00000034183)	ENSSTUG00000034266	ENSSTUG00000034273	ENSSTUG00000034283	PLCB1 (ENSSTUG00000034334)	CDCA4 (ENSSTUG00000034767)	ENSSTUG00000034775	ENSSTUG00000034795	ENSSTUG00000034806	ENSSTUG00000034820 #18	ENSSTUG00000034858 #19	eif5 (ENSSTUG00000034892) #20	mark3a (ENSSTUG00000034966) #22	ckba (ENSSTUG00000036465) #24	ENSSTUG00000036567	trmt61a (ENSSTUG00000036571) #23	bag5 (ENSSTUG00000036583)	klc1a (ENSSTUG00000036630) #25	zfyve21 (ENSSTUG00000037880) #27	brf1a (ENSSTUG00000037992)	BTBD6 (ENSSTUG00000038144)	ENSSTUG00000038217	esr2b (ENSSTUG00000038959)	esr2b (ENSSTUG00000039695)	gphb5 (ENSSTUG00000040246)	KCNH5 (ENSSTUG00000040255)	esr2b (ENSSTUG00000040315)	ENSSTUG00000042872
Salmoninae	ANCESTRAL SPECIES	119	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00390000001607.i.a	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n	ENSGT00940000180336	ENSGT00940000154902.tb.c.a	ENSGT00940000168728	ENSGT01030000234613.b.a.b.f #18	ENSGT01030000234613.b.a.a.c.a.m #19	ENSGT00390000016478.f.a #20	ENSGT00940000154862.x.b.j #22	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j #24	ENSGT00940000154239.a.c #23	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b #25	ENSGT00940000159639.c #27	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a.g	ENSGT01030000234620.a.b.a.i
Huchen	MODERN SPECIES	77	ENSHHUG00000042893	enpp4 (ENSHHUG00000043005)	CLIC5 (ENSHHUG00000043007)	cdc5l (ENSHHUG00000043011)	ENSHHUG00000043125	napba (ENSHHUG00000043129)	MCM8 (ENSHHUG00000043197)	crls1 (ENSHHUG00000043273)	ENSHHUG00000043279	CDCA4 (ENSHHUG00000043584)	ENSHHUG00000043587	ENSHHUG00000043591	ENSHHUG00000043594 #18	ENSHHUG00000043603 #19	eif5 (ENSHHUG00000043661) #20	mark3a (ENSHHUG00000043683) #22	ckba (ENSHHUG00000043873) #24	ENSHHUG00000044379	trmt61a (ENSHHUG00000044382) #23	bag5 (ENSHHUG00000044390)	coa8 (ENSHHUG00000044392)	klc1a (ENSHHUG00000044404) #25	zfyve21 (ENSHHUG00000044659) #27	ENSHHUG00000044674	ENSHHUG00000044675	BTBD6 (ENSHHUG00000044679)	ENSHHUG00000044686	ENSHHUG00000044687	esr2b (ENSHHUG00000045048)	ENSHHUG00000045180	ENSHHUG00000045193
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b	ENSGT00940000160366.h	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f #18	ENSGT01030000234613.b.a.a.c.a.m #19	ENSGT00390000016478.f.a #20	ENSGT00940000154862.x.b.j #22	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j #24	ENSGT00940000154239.a.c #23	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b #25	ENSGT00940000159639.c #27	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a.g	ENSGT01030000234620.a.b.a.i
Salmo	ANCESTRAL SPECIES	8	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.i.a	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b	ENSGT00940000160366.h	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f #18	ENSGT01030000234613.b.a.a.c.a.m #19	ENSGT00390000016478.f.a #20	ENSGT00940000154862.x.b.j #22	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j #24	ENSGT00940000154239.a.c #23	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b #25	ENSGT00940000159639.c #27	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a.h	ENSGT01030000234620.a.b.a.i
Atlantic salmon	MODERN SPECIES		kiaa1109 (ENSSSAG00000006982)	ENSSSAG00000006892	enpp4 (ENSSSAG00000006881)	ENSSSAG00000005830	ENSSSAG00000005749	ENSSSAG00000113076	ENSSSAG00000005519	ENSSSAG00000004570	ENSSSAG00000103441	ENSSSAG00000101310	LBH (ENSSSAG00000004392)	exoc3l4 (ENSSSAG00000004378) #18	tnfaip2b (ENSSSAG00000004364) #19	EIF5 (ENSSSAG00000004307) #20	ENSSSAG00000003482	MARK3 (ENSSSAG00000003552) #22	ckb (ENSSSAG00000003466) #24	ENSSSAG00000111799	bag5 (ENSSSAG00000003451)	KLC1 (ENSSSAG00000003364) #25	ZFYVE21 (ENSSSAG00000058274) #27	ENSSSAG00000093721	ENSSSAG00000003295	ENSSSAG00000121425	esr2b (ENSSSAG00000002641)	ENSSSAG00000100502	ENSSSAG00000002567	ENSSSAG00000106684	ppp2r5eb (ENSSSAG00000001667)	ENSSSAG00000105087	SYT16 (ENSSSAG00000001557)
River trout	MODERN SPECIES	26	enpp4 (ENSSTUG00000038900)	cdc5l (ENSSTUG00000038926)	ENSSTUG00000039392	ENSSTUG00000039394	napba (ENSSTUG00000039410)	MCM8 (ENSSTUG00000039950)	crls1 (ENSSTUG00000040021)	ENSSTUG00000040046	ENSSTUG00000040119	CDCA4 (ENSSTUG00000042266)	ENSSTUG00000042277	ENSSTUG00000042292	ENSSTUG00000042307 #18	ENSSTUG00000042366 #19	eif5 (ENSSTUG00000042464) #20	mark3a (ENSSTUG00000042605) #22	ckba (ENSSTUG00000043847) #24	ENSSTUG00000043864	trmt61a (ENSSTUG00000043870) #23	bag5 (ENSSTUG00000043899)	coa8 (ENSSTUG00000043911)	klc1a (ENSSTUG00000043936) #25	ENSSTUG00000044923	brf1a (ENSSTUG00000044935)	BTBD6 (ENSSTUG00000045054)	ENSSTUG00000045078	ENSSTUG00000045109	esr2b (ENSSTUG00000045577)	ENSSTUG00000045598	ENSSTUG00000045655	GPHB5 (ENSSTUG00000045670)
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831.g	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f #18	ENSGT01030000234613.b.a.a.c.a.m #19	ENSGT00390000016478.f.a #20	ENSGT00940000154862.x.b.j #22	ENSGT00950000182772.A.a.b.`b.a.j #24	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b #25	ENSGT00940000159639.c #27	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a.g	ENSGT01030000234620.a.b.a.i	ENSGT00940000158836.a.a	ENSGT00940000159673
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831.g	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f #18	ENSGT01030000234613.b.a.a.c.a.m #19	ENSGT00390000016478.f.a #20	ENSGT00940000154862.x.b.j #22	ENSGT00950000182772.A.a.b.`b.a.j #24	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b #25	ENSGT00940000159639.c #27	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a	ENSGT00730000111179.b.a	ENSGT00940000156540.a.g	ENSGT01030000234620.a.b.a.i	ENSGT00940000158836.a.a	ENSGT00940000159673
Coho salmon	MODERN SPECIES	27	kiaa1109 (ENSOKIG00005026586)	XKR6 (ENSOKIG00005027378)	enpp4 (ENSOKIG00005027390)	CDC5L (ENSOKIG00005027411)	ENSOKIG00005027475	napba (ENSOKIG00005027509)	MCM8 (ENSOKIG00005027665)	crls1 (ENSOKIG00005028204)	ENSOKIG00005028487	CDCA4 (ENSOKIG00005033374)	ENSOKIG00005033401	ENSOKIG00005033408	ENSOKIG00005033420 #18	ENSOKIG00005033440 #19	EIF5 (ENSOKIG00005033507) #20	mark3a (ENSOKIG00005033781) #22	CKB (ENSOKIG00005036610) #24	ENSOKIG00005037001	bag5 (ENSOKIG00005037016)	coa8 (ENSOKIG00005037038)	klc1a (ENSOKIG00005037085) #25	ZFYVE21 (ENSOKIG00005037153) #27	ENSOKIG00005037202	ENSOKIG00005037217	ENSOKIG00005037242	ENSOKIG00005037377	esr2b (ENSOKIG00005038442)	ENSOKIG00005038739	ENSOKIG00005038862	GPHB5 (ENSOKIG00005038895)	KCNH5 (ENSOKIG00005038916)
Chinook salmon	MODERN SPECIES	2	zgc:100846 (ENSOTSG00005019716)	kiaa1109 (ENSOTSG00005019724)	ENSOTSG00005019766	enpp4 (ENSOTSG00005019829)	cdc5l (ENSOTSG00005019834)	ENSOTSG00005021341	napba (ENSOTSG00005021342)	MCM8 (ENSOTSG00005021354)	crls1 (ENSOTSG00005021620)	ENSOTSG00005021621	CDCA4 (ENSOTSG00005021625)	ENSOTSG00005021629	ENSOTSG00005021634 #18	ENSOTSG00005021637 #19	eif5 (ENSOTSG00005021643) #20	MARK3 (ENSOTSG00005021731) #22	CKB (ENSOTSG00005025706) #24	bag5 (ENSOTSG00005025709)	coa8 (ENSOTSG00005025713)	klc1a (ENSOTSG00005025724) #25	zfyve21 (ENSOTSG00005025736) #27	ENSOTSG00005025744	BTBD6 (ENSOTSG00005025749)	ENSOTSG00005025807	esr2b (ENSOTSG00005026502)	ENSOTSG00005026505	GPHB5 (ENSOTSG00005026507)	KCNH5 (ENSOTSG00005026508)	ppp2r5eb (ENSOTSG00005026521)	SGPP1 (ENSOTSG00005028538)	SYT16 (ENSOTSG00005028541)
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000023231	ENSOMYG00000073610	ENSOMYG00000023442	ENSOMYG00000025128	napba (ENSOMYG00000025353)	ENSOMYG00000026137	crls1 (ENSOMYG00000026231)	ENSOMYG00000066175	ENSOMYG00000026567	ENSOMYG00000029014	ENSOMYG00000070183	ENSOMYG00000029016	ENSOMYG00000029028 #18	ENSOMYG00000029063 #19	EIF5 (ENSOMYG00000029194) #20	MARK3 (ENSOMYG00000029487) #22	kcrt (ENSOMYG00000030175) #24	bag5 (ENSOMYG00000030316)	COA8 (ENSOMYG00000030327)	ENSOMYG00000069844	klc1a (ENSOMYG00000030541) #25	ENSOMYG00000030602 #27	ENSOMYG00000049828	ENSOMYG00000066345	ENSOMYG00000063699	ENSOMYG00000030632	ENSOMYG00000030906	erb2 (ENSOMYG00000031569)	ENSOMYG00000031702	ENSOMYG00000031734	ENSOMYG00000031747
Northern pike	MODERN SPECIES	14	clic5a (ENSELUG00000013608)	ENSELUG00000013580	supt3h (ENSELUG00000013548)	cdc5l (ENSELUG00000013492)	napba (ENSELUG00000013424)	MCM8 (ENSELUG00000013379)	crls1 (ENSELUG00000013306)	hao1 (ENSELUG00000013296)	tmx4 (ENSELUG00000013273)	PLCB1 (ENSELUG00000013241)	CDCA4 (ENSELUG00000013163)	ENSELUG00000034002	exoc3l4 (ENSELUG00000013122) #18	ENSELUG00000013091 #19	eif5 (ENSELUG00000013021) #20	mark3a (ENSELUG00000012906) #22	ENSELUG00000032851	ckb (ENSELUG00000000464) #24	trmt61a (ENSELUG00000012611) #23	ENSELUG00000030755	bag5 (ENSELUG00000024943)	apopt1 (ENSELUG00000012568)	klc1a (ENSELUG00000012511) #25	zfyve21 (ENSELUG00000012406) #27	brf1a (ENSELUG00000012342)	BTBD6 (ENSELUG00000012265)	ENSELUG00000012210	esr2b (ENSELUG00000012140)	ENSELUG00000012111	gphb5 (ENSELUG00000012016)	KCNH5 (ENSELUG00000011998)
Otomorpha	ANCESTRAL SPECIES	242									ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.d	ENSGT00390000010349.a.b	ENSGT00960000187998	ENSGT00940000164854.b.e	ENSGT00940000156116.A	ENSGT00940000154656.ob.a.r	ENSGT00940000176966
Otophysi	ANCESTRAL SPECIES	12	ENSGT00940000158836.a.b	ENSGT00390000018691.d	ENSGT00940000165916.e.b	ENSGT00940000156487.cb	ENSGT00940000160091	ENSGT00940000154832.db.a	ENSGT00940000155077.u	ENSGT00940000174626	ENSGT01060000248685	ENSGT00940000153463.a.c.b #28	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00930000151053 #26	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000154045.b	ENSGT00940000164854.b.f	ENSGT00940000156116.B	ENSGT00940000154656.ob.b	ENSGT00390000002032	ENSGT00940000156452.a.a
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000158120	ENSGT00940000156925.v	ENSGT00940000154518.b	ENSGT00940000155139	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000162768.A	ENSGT00940000162185	ENSGT00940000157051	ENSGT00940000156914.o.b	ENSGT00940000155303.l
Channel catfish	MODERN SPECIES	22	HELLS (ENSIPUG00000002634)	ENSIPUG00000002680	ENSIPUG00000002709	H2afy2 (ENSIPUG00000002757)	gbf1 (ENSIPUG00000002803)	pitx3 (ENSIPUG00000002981)	PNLIPRP2 (ENSIPUG00000002993)	gins1 (ENSIPUG00000003089)	ninl (ENSIPUG00000003152)	AIFM2 (ENSIPUG00000003201)	ENSIPUG00000003245	ENSIPUG00000003257 #18	exoc3l4 (ENSIPUG00000003285) #18	ENSIPUG00000003305 #19	eif5 (ENSIPUG00000003331) #20	mark3 (ENSIPUG00000003398) #22	ckba (ENSIPUG00000003503) #24	trmt61a (ENSIPUG00000003613) #23	bag5 (ENSIPUG00000003641)	apopt1 (ENSIPUG00000003665)	klc1 (ENSIPUG00000003683) #25	ttl (ENSIPUG00000003796)	fignl1 (ENSIPUG00000003825)	ikzf1 (ENSIPUG00000003841)	c3h7orf72 (ENSIPUG00000003880)	vwc2 (ENSIPUG00000003893)	ENSIPUG00000003914	zgc:110045 (ENSIPUG00000003932)	mocos (ENSIPUG00000003946)	anxa11a (ENSIPUG00000003965)	dlg5 (ENSIPUG00000004020)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000167270	ENSGT00940000158120	ENSGT00940000156925.v	ENSGT00940000154518.b	ENSGT00940000155139	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000168728	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000162768.A	ENSGT00940000162185	ENSGT00940000157051	ENSGT00940000156914.o.b	ENSGT00940000155303.l
Electric eel	MODERN SPECIES	1	galm (ENSEEEG00000003433)	atl2 (ENSEEEG00000003481)	hells (ENSEEEG00000004554)	ENSEEEG00000004611	macroh2a2 (ENSEEEG00000004618)	ENSEEEG00000004622	pitx3 (ENSEEEG00000004623)	PNLIPRP2 (ENSEEEG00000004628)	gins1 (ENSEEEG00000004750)	ninl (ENSEEEG00000004759)	AIFM2 (ENSEEEG00000004763)	ENSEEEG00000004768	ENSEEEG00000004773	ENSEEEG00000004775 #19	EIF5 (ENSEEEG00000004780) #20	mark3a (ENSEEEG00000004785) #22	ckba (ENSEEEG00000004850) #24	ENSEEEG00000004949	trmt61a (ENSEEEG00000004950) #23	bag5 (ENSEEEG00000004951)	coa8 (ENSEEEG00000004958)	klc1a (ENSEEEG00000004989) #25	ttl (ENSEEEG00000005087)	fignl1 (ENSEEEG00000005088)	ikzf1 (ENSEEEG00000005094)	vwc2 (ENSEEEG00000005186)	ENSEEEG00000005191	MOCOS (ENSEEEG00000005202)	ENSEEEG00000005282	dlg5a (ENSEEEG00000006191)	kcnma1a (ENSEEEG00000006264)
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000158120	ENSGT00940000156925.v	ENSGT00940000154518.b	ENSGT00940000155139	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000156837	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000162768.A	ENSGT00940000162185	ENSGT00940000157051	ENSGT00940000156914.o.b	ENSGT00940000155303.l
Red-bellied piranha	MODERN SPECIES	10	pitx3 (ENSPNAG00000029928)	PNLIPRP2 (ENSPNAG00000029920)	gins1 (ENSPNAG00000029876)	ninl (ENSPNAG00000029902)	AIFM2 (ENSPNAG00000029863)	ENSPNAG00000029857	ENSPNAG00000004680	ENSPNAG00000029833	ENSPNAG00000029830	ENSPNAG00000029823	ENSPNAG00000029810 #18	ENSPNAG00000029805 #18	exoc3l4 (ENSPNAG00000004678) #18	ENSPNAG00000029768 #19	EIF5 (ENSPNAG00000029712) #20	mark3a (ENSPNAG00000029687) #22	ckba (ENSPNAG00000004654) #24	trmt61a (ENSPNAG00000029500) #23	bag5 (ENSPNAG00000029483)	coa8 (ENSPNAG00000004611)	klc1a (ENSPNAG00000004610) #25	ttl (ENSPNAG00000005397)	fignl1 (ENSPNAG00000029349)	ikzf1 (ENSPNAG00000004566)	SPATA48 (ENSPNAG00000004535)	vwc2 (ENSPNAG00000029192)	ENSPNAG00000006838	zgc:110045 (ENSPNAG00000004501)	MOCOS (ENSPNAG00000028740)	anxa11a (ENSPNAG00000028657)	dlg5a (ENSPNAG00000028221)
Mexicana tetra	MODERN SPECIES	17	macroh2a2 (ENSAMXG00000002015)	GBF1 (ENSAMXG00000002009)	pitx3 (ENSAMXG00000029072)	PNLIPRP2 (ENSAMXG00000002005)	gins1 (ENSAMXG00000041281)	ninl (ENSAMXG00000001987)	AIFM2 (ENSAMXG00000001966)	ENSAMXG00000034311	ENSAMXG00000029877	ENSAMXG00000035908	ENSAMXG00000038628	ENSAMXG00000033759	exoc3l4 (ENSAMXG00000001925) #18	ENSAMXG00000001905 #19	EIF5 (ENSAMXG00000001895) #20	mark3a (ENSAMXG00000001870) #22	ckba (ENSAMXG00000001864) #24	trmt61a (ENSAMXG00000037952) #23	bag5 (ENSAMXG00000001856)	coa8 (ENSAMXG00000031206)	klc1a (ENSAMXG00000035475) #25	ttl (ENSAMXG00000001831)	fignl1 (ENSAMXG00000026057)	ikzf1 (ENSAMXG00000001814)	SPATA48 (ENSAMXG00000001803)	vwc2 (ENSAMXG00000033541)	ENSAMXG00000001760	MOCOS (ENSAMXG00000001739)	anxa11a (ENSAMXG00000033610)	dlg5a (ENSAMXG00000001625)	ENSAMXG00000035070
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00940000167270	ENSGT00940000154865	ENSGT00940000158120	ENSGT00940000156925.v	ENSGT00940000154518.b	ENSGT00390000013968.c	ENSGT00660000095541.a.a	ENSGT00390000004582	ENSGT00940000160366	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000169764	ENSGT00940000155555.b #25	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00940000175717	ENSGT00720000108792.A	ENSGT00940000162768.A	ENSGT00940000162185
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	96															ENSGT00390000016478.c.a.b #20	ENSGT00940000154862.x.b.k #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a.m #24	ENSGT00940000154239.a.f #23	ENSGT00940000158888.p	ENSGT00390000008212.j	ENSGT00940000155555.b.a #25	ENSGT00940000161907.c	ENSGT00940000161552.c	ENSGT00940000156782.c.e	ENSGT00940000175717	ENSGT00720000108792.A.e	ENSGT00940000162768.A.b	ENSGT00940000157051.d	ENSGT00940000156914.o.b	ENSGT00940000155303.l.b
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00530000068411	ENSGT00940000154865.kc.b	ENSGT00940000158120.g	ENSGT00940000156925.v.a	ENSGT00940000154518.b.j	ENSGT00390000013968.c	ENSGT00660000095541.a.a.i	ENSGT00390000004582.e	ENSGT00940000160366.i	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g.a #18	ENSGT01030000234613.b.a.a.c.a.b #19	ENSGT00390000016478.c.a.b #20	ENSGT00940000154862.x.b.k #22	ENSGT00950000182772.A.a.b.`b.a.m #24	ENSGT00940000154239.a.f #23	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a.n #24	ENSGT00940000154239.a.e.b #23	ENSGT00940000158888.p	ENSGT00390000008212.j	ENSGT00940000155555.b.a #25	ENSGT00940000161907.c	ENSGT00940000161552.c	ENSGT00940000156782.c.e	ENSGT00940000175717	ENSGT00720000108792.A.e	ENSGT00940000162768.A.b	ENSGT00940000157051.d
Golden-line barbel	MODERN SPECIES	44						ENSSGRG00000040434	pitx3 (ENSSGRG00000040436)	ENSSGRG00000040449	ninl (ENSSGRG00000040452)	AIFM2 (ENSSGRG00000040455)	ENSSGRG00000040460	ENSSGRG00000040463	exoc3l4 (ENSSGRG00000040470) #18	ENSSGRG00000040471 #19	ENSSGRG00000040476 #20	mark3a (ENSSGRG00000040691) #22	ckba (ENSSGRG00000040901) #24	ENSSGRG00000041627	trmt61a (ENSSGRG00000041629) #23	bag5 (ENSSGRG00000041632)	coa8 (ENSSGRG00000041635)	klc1a (ENSSGRG00000041636) #25	ttl (ENSSGRG00000041639)	fignl1 (ENSSGRG00000041640)	ikzf1 (ENSSGRG00000041641)	vwc2 (ENSSGRG00000041642)	zgc:110045 (ENSSGRG00000041643)	MOCOS (ENSSGRG00000041645)	ENSSGRG00000041822	dlg5a (ENSSGRG00000043037)	kcnma1a (ENSSGRG00000043159)
Common carp reference	MODERN SPECIES	48	ENSCCRG00000025131	ENSCCRG00000072851	macroh2a2 (ENSCCRG00000027439)	ENSCCRG00000027640	pitx3 (ENSCCRG00000047836)	ENSCCRG00000031584	gins1 (ENSCCRG00000018976)	ninl (ENSCCRG00000018970)	ENSCCRG00000018965	ENSCCRG00000055451	ENSCCRG00000018951	ENSCCRG00000018947 #18	exoc3l4 (ENSCCRG00000075093) #18	ENSCCRG00000018917 #19	ENSCCRG00000067235 #20	MARK3 (ENSCCRG00000018569) #22	bag5 (ENSCCRG00000020801)	ENSCCRG00000018566	coa8 (ENSCCRG00000037353)	klc1a (ENSCCRG00000037373) #25	ttl (ENSCCRG00000037408)	fignl1 (ENSCCRG00000059292)	ikzf1 (ENSCCRG00000057008)	vwc2 (ENSCCRG00000029492)	ENSCCRG00000027672	ENSCCRG00000040590	ENSCCRG00000013300	dlg5a (ENSCCRG00000033793)	kcnma1a (ENSCCRG00000015531)	lrmda (ENSCCRG00000037087)	ENSCCRG00000061379
Goldfish	MODERN SPECIES	4	rhoua (ENSCARG00000063145)	rab4a (ENSCARG00000063134)	epas1b (ENSCARG00000062718)	DHX57 (ENSCARG00000062466)	atl2 (ENSCARG00000056846)	hells (ENSCARG00000056179)	ENSCARG00000055916	macroh2a2 (ENSCARG00000055870)	GBF1 (ENSCARG00000055550)	pitx3 (ENSCARG00000055479)	ENSCARG00000055448	ENSCARG00000055436	exoc3l4 (ENSCARG00000055416) #18	ENSCARG00000055390 #19	EIF5 (ENSCARG00000055286) #20	mark3a (ENSCARG00000054962) #22	ENSCARG00000054937	ckba (ENSCARG00000054814) #24	trmt61a (ENSCARG00000054803) #23	bag5 (ENSCARG00000054747)	coa8 (ENSCARG00000054688)	klc1a (ENSCARG00000054267) #25	ttl (ENSCARG00000054215)	fignl1 (ENSCARG00000054206)	ikzf1 (ENSCARG00000053923)	ENSCARG00000053892	ENSCARG00000053884	ENSCARG00000053879	vwc2 (ENSCARG00000053870)	ENSCARG00000053760	anxa11a (ENSCARG00000051271)
Cyprininae	ANCESTRAL SPECIES	87	ENSGT00740000115593.a	ENSGT00530000068411	ENSGT00940000154865.kc.b	ENSGT00940000158120.g	ENSGT00940000156925.v.a	ENSGT00940000154518.b.j	ENSGT00390000013968.c	ENSGT00660000095541.a.a.i	ENSGT00390000004582.e	ENSGT00940000160366.i	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000164834.a	ENSGT01030000234613.b.a.b.g.b #18	ENSGT01030000234613.b.a.a.c.a.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b.l #22	ENSGT01100000266056	ENSGT00950000182772.A.a.b.`b.a.n #24	ENSGT00940000154239.a.e.b #23	ENSGT01030000234613.b.a.b.h #18	ENSGT01030000234613.b.a.b.g.a #18	ENSGT01030000234613.b.a.a.c.a.b #19	ENSGT00940000154239.a.e.a #23	ENSGT00940000158888.o	ENSGT00390000008212.i	ENSGT00940000169764	ENSGT00940000155555.b.b #25	ENSGT00940000161907.d	ENSGT00940000161552.d	ENSGT00940000156782.c.f	ENSGT00720000108792.A.f
Cyprininae_a	ANCESTRAL SPECIES	216	ENSGT00940000165391.a	ENSGT00940000164285.a.f.b	ENSGT00940000154711.a.a.c	ENSGT00940000155930.g.a.a	ENSGT00940000156883.g	ENSGT00940000155710.a.k	ENSGT00740000115593.b	ENSGT00940000167270	ENSGT00940000154865.kc.a	ENSGT00940000158120.h	ENSGT00940000156925.v.b	ENSGT00940000154518.b.i	ENSGT01030000234613.b.a.b.g.b #18	ENSGT01030000234613.b.a.a.c.a.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b.l #22
Golden-line barbel	MODERN SPECIES	116	atl2 (ENSSGRG00000023176)	hells (ENSSGRG00000022846)	ENSSGRG00000022842	macroh2a2 (ENSSGRG00000022749)	GBF1 (ENSSGRG00000022584)	pitx3 (ENSSGRG00000022571)	gins1 (ENSSGRG00000022567)	ninl (ENSSGRG00000022553)	ENSSGRG00000022547	ENSSGRG00000022546	ENSSGRG00000022544	ENSSGRG00000022543	ENSSGRG00000022540	ENSSGRG00000022536 #19	ENSSGRG00000022422 #20	mark3a (ENSSGRG00000020219) #22	ENSSGRG00000020175	ckba (ENSSGRG00000020174) #24	trmt61a (ENSSGRG00000020170) #23	bag5 (ENSSGRG00000020163)	coa8 (ENSSGRG00000020162)	klc1a (ENSSGRG00000019933) #25	ikzf1 (ENSSGRG00000019915)	ENSSGRG00000019913	vwc2 (ENSSGRG00000019911)	ENSSGRG00000019910	ENSSGRG00000019909	anxa11a (ENSSGRG00000019872)	dlg5a (ENSSGRG00000019266)	kcnma1a (ENSSGRG00000012273)	lrmda (ENSSGRG00000012105)
Common carp reference	MODERN SPECIES	18	ENSCCRG00000075770	epas1b (ENSCCRG00000024181)	ENSCCRG00000024186	atl2 (ENSCCRG00000060545)	hells (ENSCCRG00000027223)	ENSCCRG00000056281	ENSCCRG00000073729	macroh2a2 (ENSCCRG00000018156)	ENSCCRG00000038554	pitx3 (ENSCCRG00000038544)	ENSCCRG00000078542	ENSCCRG00000041921	ENSCCRG00000018934 #18	ENSCCRG00000018498 #19	EIF5 (ENSCCRG00000018349) #20	mark3a (ENSCCRG00000074047) #22	ckba (ENSCCRG00000018553) #24	trmt61a (ENSCCRG00000055745) #23	bag5 (ENSCCRG00000031680)	coa8 (ENSCCRG00000020794)	klc1a (ENSCCRG00000061513) #25	ttl (ENSCCRG00000023529)	fignl1 (ENSCCRG00000063996)	ikzf1 (ENSCCRG00000080442)	ENSCCRG00000054106	vwc2 (ENSCCRG00000027662)	ENSCCRG00000040605	ENSCCRG00000077151	anxa11a (ENSCCRG00000022115)	dlg5a (ENSCCRG00000028965)	kcnma1a (ENSCCRG00000054915)
Goldfish	MODERN SPECIES	31	hells (ENSCARG00000051495)	ENSCARG00000051148	macroh2a2 (ENSCARG00000051088)	GBF1 (ENSCARG00000050901)	pitx3 (ENSCARG00000050860)	gins1 (ENSCARG00000050815)	ninl (ENSCARG00000050765)	AIFM2 (ENSCARG00000050745)	ENSCARG00000050720	ENSCARG00000050710	ENSCARG00000050690 #18	exoc3l4 (ENSCARG00000050658) #18	ENSCARG00000050635 #19	ENSCARG00000050625	EIF5 (ENSCARG00000050598) #20	mark3a (ENSCARG00000046908) #22	ENSCARG00000046809	ckba (ENSCARG00000046562) #24	trmt61a (ENSCARG00000046512) #23	bag5 (ENSCARG00000046451)	coa8 (ENSCARG00000046422)	ENSCARG00000046408	klc1a (ENSCARG00000045729) #25	ttl (ENSCARG00000045607)	fignl1 (ENSCARG00000045590)	ikzf1 (ENSCARG00000045160)	vwc2 (ENSCARG00000045082)	ENSCARG00000045010	MOCOS (ENSCARG00000044885)	anxa11a (ENSCARG00000044215)	dlg5a (ENSCARG00000037005)
Zebrafish	MODERN SPECIES	4	ENSDARG00000074036	slc4a11 (ENSDARG00000075532)	rpia (ENSDARG00000056640)	EIF2AK3 (ENSDARG00000062139)	atrn (ENSDARG00000062164)	gfra4a (ENSDARG00000056651)	ap5s1 (ENSDARG00000076755)	cdc25b (ENSDARG00000010792)	noto (ENSDARG00000021201)	emx1 (ENSDARG00000039569)	sfxn5a (ENSDARG00000103595)	ENSDARG00000104179	mavs (ENSDARG00000069733)	pank2 (ENSDARG00000003311)	loxl3b (ENSDARG00000039563)	mark3a (ENSDARG00000019345) #22	ckba (ENSDARG00000069752) #24	ENSDARG00000111126	trmt61a (ENSDARG00000008480) #23	bag5 (ENSDARG00000017316)	coa8 (ENSDARG00000092473)	klc1a (ENSDARG00000009796) #25	ENSDARG00000093131	ttl (ENSDARG00000062418)	fignl1 (ENSDARG00000016427)	ikzf1 (ENSDARG00000013539)	SPATA48 (ENSDARG00000109818)	vwc2 (ENSDARG00000076495)	ENSDARG00000110961	zgc:110045 (ENSDARG00000057141)	anxa11a (ENSDARG00000077383)
Clupeiformes	ANCESTRAL SPECIES	245													ENSGT01030000234613.b.a.b #18	ENSGT01030000234613.b.a.a.c.a #19	ENSGT00390000016478.c.b #20	ENSGT00940000154862.x.b #22	ENSGT00950000182772.A.a.b.`b.a #24	ENSGT01030000234848	ENSGT00940000154239.a #23	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555 #25	ENSGT00940000159639 #27	ENSGT00940000155720.d	ENSGT00390000010349.a.b	ENSGT00940000164854.b.e	ENSGT00940000156116.A	ENSGT00940000154656.ob.a.r	ENSGT00730000111179.b	ENSGT00940000156540.a	ENSGT00390000018691.c
Denticle herring	MODERN SPECIES		ENSDCDG00000030677	pank2 (ENSDCDG00000030680)	loxl3b (ENSDCDG00000030698)	si:dkey-112g5.16 (ENSDCDG00000030763)	mrps26 (ENSDCDG00000030767)	si:dkey-33c12.3 (ENSDCDG00000030772)	pcgf1 (ENSDCDG00000030775)	si:dkey-33c12.4 (ENSDCDG00000030779)	zgc:123321 (ENSDCDG00000030783)	pomk (ENSDCDG00000030785)	wdr32 (ENSDCDG00000030787)	CPXM1 (ENSDCDG00000030797)	exoc3l4 (ENSDCDG00000030806) #18	ENSDCDG00000030808 #19	EIF5 (ENSDCDG00000030820) #20	mark3a (ENSDCDG00000030887) #22	ckba (ENSDCDG00000031514) #24	ENSDCDG00000031520	trmt61a (ENSDCDG00000031521) #23	bag5 (ENSDCDG00000031523)	coa8 (ENSDCDG00000031527)	klc1a (ENSDCDG00000031533) #25	zfyve21 (ENSDCDG00000031602) #27	ENSDCDG00000031608	marcksl1a (ENSDCDG00000031610)	bsdc1 (ENSDCDG00000031620)	olig4 (ENSDCDG00000031690)	FNDC5 (ENSDCDG00000031695)	ldlrap1b (ENSDCDG00000031701)	maco1b (ENSDCDG00000031707)	XKR6 (ENSDCDG00000031725)
Osteoglossocephalai	ANCESTRAL SPECIES	54								ENSGT00940000164681	ENSGT00390000018613.b	ENSGT00390000007071	ENSGT00940000164878.b	ENSGT00940000166053	ENSGT00940000155031.a.b	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292	ENSGT00940000164137.a	ENSGT00940000160539
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00940000154862.y #22
P. kingsleyae	MODERN SPECIES	1484																ENSPKIG00000009719 #22
Clupeocephala	ANCESTRAL SPECIES	65														ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Otomorpha	ANCESTRAL SPECIES	697															ENSGT00390000016478.d #20	ENSGT00940000154862.y #22	ENSGT01100000265079
Clupeiformes	ANCESTRAL SPECIES	823															ENSGT00390000016478.d #20	ENSGT00940000154862.y #22
Atlantic herring	MODERN SPECIES	5	ENSCHAG00000002630	gskip (ENSCHAG00000002506)	npc2.1 (ENSCHAG00000002481)	isca2 (ENSCHAG00000002383)	plk4 (ENSCHAG00000008608)	ENSCHAG00000006573	ENSCHAG00000006481	mrpl35 (ENSCHAG00000006470)	ENSCHAG00000006446	ENSCHAG00000006438	gpr37b (ENSCHAG00000006415)	ENSCHAG00000006324	ENSCHAG00000006316	zfyve28 (ENSCHAG00000006122)	EIF5 (ENSCHAG00000006019) #20	ENSCHAG00000006002 #22	exoc3l4 (ENSCHAG00000005985) #18	ENSCHAG00000005913 #19	trmt61a (ENSCHAG00000005873) #23	bag5 (ENSCHAG00000005843)	coa8 (ENSCHAG00000005829)	klc1a (ENSCHAG00000005605) #25	ENSCHAG00000005344 #27	btbd6a (ENSCHAG00000005318)	ENSCHAG00000005281	ENSCHAG00000005273	ENSCHAG00000005235	ENSCHAG00000005158	ENSCHAG00000005124	GPHB5 (ENSCHAG00000005115)	ENSCHAG00000005112
Otophysi	ANCESTRAL SPECIES	808																ENSGT00940000154862.y #22	ENSGT01100000265079
Characiphysae	ANCESTRAL SPECIES	508																ENSGT00940000154862.y #22	ENSGT01100000265079
Channel catfish	MODERN SPECIES	22	mat1a (ENSIPUG00000005424)	zgc:154058 (ENSIPUG00000005399)	ENSIPUG00000005372	ENSIPUG00000005349	ENSIPUG00000005336	STOX1 (ENSIPUG00000005320)	ccar1 (ENSIPUG00000005123)	si:dkey-228d14.5 (ENSIPUG00000005094)	eif4e1c (ENSIPUG00000005027)	tet1 (ENSIPUG00000005004)	Slc25a16 (ENSIPUG00000004964)	ALOX5 (ENSIPUG00000004930)	Fam21 (ENSIPUG00000004769)	zfand4 (ENSIPUG00000004728)	marchf8 (ENSIPUG00000004619)	ENSIPUG00000004606 #22	ENSIPUG00000004596	ckba (ENSIPUG00000004569) #24	vdac2 (ENSIPUG00000004553)	ENSIPUG00000004549	ifit8 (ENSIPUG00000004546)	comtd1 (ENSIPUG00000004535)	znf503 (ENSIPUG00000004515)	CJ011 (ENSIPUG00000004493)	kcnma1a (ENSIPUG00000004383)	dlg5 (ENSIPUG00000004020)	anxa11a (ENSIPUG00000003965)	mocos (ENSIPUG00000003946)	zgc:110045 (ENSIPUG00000003932)	ENSIPUG00000003914	vwc2 (ENSIPUG00000003893)
Euteleosteomorpha	ANCESTRAL SPECIES	192			ENSGT00940000159026	ENSGT00390000018729.b	ENSGT00390000007726.b	ENSGT00940000154427.B	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Acanthomorphata	DUPLICATION
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES	151			ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000165499.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000156614.b	ENSGT00940000158573	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000002231.b	ENSGT00520000055620.A	ENSGT00940000165499.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00520000055620.A	ENSGT00940000165499.b	ENSGT01100000263473.a.b.g.a.a.b.b.a.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00390000007971	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00520000055620.A	ENSGT00940000165499.b	ENSGT01100000263473.a.b.g.a.a.b.b.a.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000007971	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00520000055620.A	ENSGT00940000165499.b	ENSGT01100000263473.a.b.g.a.a.b.b.a.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000007971	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00390000002231.b	ENSGT00520000055620.A	ENSGT01040000240385.A.a.b.a	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000156038.a.a.d.a.i.b.b	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT00940000156038.a.a.d.a.i.b.a	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000165499.b	ENSGT00940000156038.a.a.d.a.i.b.b	ENSGT00940000156038.a.a.d.a.i.b.a	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000155031.b	ENSGT00940000154862.y.a.a #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Lyretail cichlid	MODERN SPECIES	381		ENSNBRG00000005239	ENSNBRG00000005249	ENSNBRG00000005265	ENSNBRG00000005301	syt4 (ENSNBRG00000005331)	ENSNBRG00000005355	m1ap (ENSNBRG00000005401)	dok1b (ENSNBRG00000005431)	nagk (ENSNBRG00000005476)	PAIP2B (ENSNBRG00000005505)	hspa12b (ENSNBRG00000005521)	cct7 (ENSNBRG00000005574)	krcp (ENSNBRG00000005619)	ENSNBRG00000005662	ENSNBRG00000005670 #22	ENSNBRG00000005677	rcor2 (ENSNBRG00000005738)	naa40 (ENSNBRG00000006277)	b3gat3 (ENSNBRG00000006305)	arl2 (ENSNBRG00000006393)	PPP2R5B (ENSNBRG00000006399)	ENSNBRG00000006441	gpha2 (ENSNBRG00000006468)	zgc:101765 (ENSNBRG00000006488)	ENSNBRG00000006508	slc8a4b (ENSNBRG00000006527)	plcb3 (ENSNBRG00000006591)	ppp1r14bb (ENSNBRG00000006684)	brms1 (ENSNBRG00000006704)	tmem179ba (ENSNBRG00000006759)
Tiger tail seahorse	MODERN SPECIES	43	nsd2 (ENSHCOG00000001008)	jade1 (ENSHCOG00000000999)	asmt2 (ENSHCOG00000000989)	ENSHCOG00000000977 #19	ENSHCOG00000000041 #18	ENSHCOG00000000961	ENSHCOG00000000956	si:dkey-177p2.6 (ENSHCOG00000000950)	cdca4 (ENSHCOG00000000948)	ahsa1b (ENSHCOG00000000941)	ENSHCOG00000000923	ENSHCOG00000000918	pgrmc2 (ENSHCOG00000000911)	vps29 (ENSHCOG00000000908)	eif5 (ENSHCOG00000000904) #20	ENSHCOG00000000039 #22	ENSHCOG00000000896 #22	ENSHCOG00000000895	CKB (ENSHCOG00000000893) #24	trmt61a (ENSHCOG00000000889) #23	bag5 (ENSHCOG00000000886)	coa8 (ENSHCOG00000000883)	klc1a (ENSHCOG00000000881) #25	zfyve21 (ENSHCOG00000021085) #27	ENSHCOG00000021089	btbd6a (ENSHCOG00000021090)	ENSHCOG00000021094	dkc1 (ENSHCOG00000021099)	ENSHCOG00000021104 #12	ENSHCOG00000021106 #11	ENSHCOG00000021107 #14
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000154862.y.a.b #22
Yellowtail amberjack	MODERN SPECIES	2214															ATL2 (ENSSLDG00000002810)	ENSSLDG00000002858 #22	ENSSLDG00000002877	ENSSLDG00000002899
Tiger tail seahorse	MODERN SPECIES	506	zgc:112271 (ENSHCOG00000011368)	zgc:112271 (ENSHCOG00000011359)	ENSHCOG00000011351	zgc:112271 (ENSHCOG00000011345)	slx1b (ENSHCOG00000011332)	ENSHCOG00000011322	ENSHCOG00000011313	PCDH7 (ENSHCOG00000011283)	STIM2 (ENSHCOG00000011263)	ENSHCOG00000011243	pik3c3 (ENSHCOG00000011229)	MSMP (ENSHCOG00000011202)	rgp1 (ENSHCOG00000011189)	GBA2 (ENSHCOG00000011163)	ENSHCOG00000011100	ENSHCOG00000011083 #22	ENSHCOG00000011073	zdhhc21 (ENSHCOG00000011062)	NFIB (ENSHCOG00000011049)	TESK1 (ENSHCOG00000011012)	faah2b (ENSHCOG00000010968)	nelfa (ENSHCOG00000010961)	C4orf48 (ENSHCOG00000010950)	nat8l (ENSHCOG00000010946)	ENSHCOG00000010939	haus3 (ENSHCOG00000010918)	ptgr1.1 (ENSHCOG00000010905)	ENSHCOG00000010900	ENSHCOG00000010889	ENSHCOG00000010878	ENSHCOG00000010869
Cod	MODERN SPECIES	8	ENSGMOG00000001530	ENSGMOG00000030375	ENSGMOG00000004522	ENSGMOG00000026263	ENSGMOG00000006095	ENSGMOG00000006085	syt4 (ENSGMOG00000035413)	ENSGMOG00000018217	ENSGMOG00000012091	ENSGMOG00000033718	ENSGMOG00000027089	ENSGMOG00000015558	krcp (ENSGMOG00000017482)	ENSGMOG00000035208	MARK2 (ENSGMOG00000017443)	ENSGMOG00000032576 #22	rcor2 (ENSGMOG00000011038)	naa40 (ENSGMOG00000011030)	b3gat3 (ENSGMOG00000011019)	arl2 (ENSGMOG00000011008)	ENSGMOG00000005999	ENSGMOG00000030920	gpha2 (ENSGMOG00000000844)	ENSGMOG00000032615	ENSGMOG00000036979	ENSGMOG00000030875	ENSGMOG00000036397	ENSGMOG00000025381	ndrg2 (ENSGMOG00000015846)	ENSGMOG00000013170	cbln11 (ENSGMOG00000028513)
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Ballan wrasse	MODERN SPECIES	36																ENSLBEG00000000046 #22	lgi1a (ENSLBEG00000000049)	PDE6C (ENSLBEG00000000052)	ENSLBEG00000000061	MYOF (ENSLBEG00000000073)	PARG (ENSLBEG00000000144)	OGDHL (ENSLBEG00000000195)	zgc:153142 (ENSLBEG00000000256)	chata (ENSLBEG00000000273)	slc18a3a (ENSLBEG00000000315)	rgra (ENSLBEG00000000337)	lrit1a (ENSLBEG00000000363)	lrit2 (ENSLBEG00000000382)	cdhr1a (ENSLBEG00000000426)	chst3a (ENSLBEG00000000669)	pax2a (ENSLBEG00000000688)
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000165499.b	ENSGT00940000156038.a.a.d.a.i.b	ENSGT01040000240385.A.a.b.a	ENSGT01100000263473.a.b.g.a.a.b.b.a.b	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000154862.y.b #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Oryzias	ANCESTRAL SPECIES	21	ENSGT00390000002596.a	ENSGT00540000073610.B	ENSGT01070000253822.D.b.n	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000156614.b.rb.b.a.b	ENSGT00940000156614.b.rb.b.a.a	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000154862.y.b #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00530000063854	ENSGT00940000161036.A.e	ENSGT00940000156614.b.rb.b.a.b	ENSGT00940000156614.b.rb.b.a.a	ENSGT00940000156614.b.rb.a.b	ENSGT00940000156614.b.rb.a.a.b	ENSGT00940000156614.b.rb.a.a.a	ENSGT00940000159592	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c	ENSGT00940000159032.h	ENSGT00550000074832	ENSGT00940000166766	ENSGT00940000154862.y.b #22	ENSGT00940000155031.a.a	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00940000156954	ENSGT00800000125313	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a	ENSGT00730000111179.a.b	ENSGT00390000009379	ENSGT00940000168662	ENSGT00940000164916	ENSGT00940000167292.a	ENSGT00940000164137.a	ENSGT00940000160539
Indian medaka	MODERN SPECIES	19	ENSOMEG00000009392	ENSOMEG00000009375	ENSOMEG00000000233	ENSOMEG00000009278	ENSOMEG00000009238	ENSOMEG00000009216	ENSOMEG00000009203	SEMA4F (ENSOMEG00000009182)	m1ap (ENSOMEG00000009130)	dok1b (ENSOMEG00000009033)	nagk (ENSOMEG00000008994)	PAIP2B (ENSOMEG00000008937)	hspa12b (ENSOMEG00000008901)	cct7 (ENSOMEG00000008874)	krcp (ENSOMEG00000008804)	ENSOMEG00000008759 #22	ENSOMEG00000008745	rcor2 (ENSOMEG00000008722)	naa40 (ENSOMEG00000008624)	b3gat3 (ENSOMEG00000000643)	sb:cb1058 (ENSOMEG00000008543)	arl2 (ENSOMEG00000008521)	batf2 (ENSOMEG00000008462)	PPP2R5B (ENSOMEG00000008434)	ENSOMEG00000000205	gpha2 (ENSOMEG00000008367)	ENSOMEG00000008355	zgc:101765 (ENSOMEG00000008336)	ENSOMEG00000008313	slc8a4b (ENSOMEG00000008263)	plcb3 (ENSOMEG00000008118)
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Midas cichlid	MODERN SPECIES	515													znf346 (ENSACIG00000024439)	ncf1 (ENSACIG00000024440)	st6gal1 (ENSACIG00000024441)	ENSACIG00000024442 #22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Spiny chromis	MODERN SPECIES	3103																ENSAPOG00000010327 #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000154862.y.b #22
Orange clownfish	MODERN SPECIES	2	lft1 (ENSAPEG00000014731)	cdc42bpab (ENSAPEG00000014843) ##16	fzd3a (ENSAPEG00000015142)	fbxo16 (ENSAPEG00000015182)	fam49a (ENSAPEG00000015213)	vsnl1a (ENSAPEG00000015297)	sf3b6 (ENSAPEG00000015311)	tdrd6 (ENSAPEG00000015328)	pla2g7 (ENSAPEG00000015345)	ints9 (ENSAPEG00000015363)	glrx5 (ENSAPEG00000015433)	prkrip1 (ENSAPEG00000015439)	clmnb (ENSAPEG00000015453)	ENSAPEG00000015475	SERPINA4 (ENSAPEG00000015491)	ENSAPEG00000015518 #22	ENSAPEG00000015521	flrt2 (ENSAPEG00000015545)	ENSAPEG00000015569	zgc:153383 (ENSAPEG00000015586)	psma6b (ENSAPEG00000015590)	nfkbiaa (ENSAPEG00000015610)	ENSAPEG00000015631	calm1b (ENSAPEG00000015675)	psmc1a (ENSAPEG00000015694)	kcnk13b (ENSAPEG00000015724)	ches1 (ENSAPEG00000015761)	gtf2a1 (ENSAPEG00000015768)	tshr (ENSAPEG00000015803)	CEP128 (ENSAPEG00000015859)	ENSAPEG00000015924
Protacanthopterygii	ANCESTRAL SPECIES	193						ENSGT00390000015102.a.a	ENSGT00940000154598	ENSGT00940000167479	ENSGT00940000159071.y.b	ENSGT00940000156927	ENSGT01030000234517.H.a #16	ENSGT00940000164834.b	ENSGT01030000234613.b.a.a.c.b #19	ENSGT00390000016478.e #20	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00940000154862.y #22	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b #24	ENSGT00940000163655.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.c.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154862.y.c.a #22
Salmo	ANCESTRAL SPECIES	130	ENSGT00940000159026.i.a	ENSGT00390000005656	ENSGT00940000155980.A	ENSGT00510000047418	ENSGT00390000017284.a.b.c.d	ENSGT00940000159032	ENSGT00550000074832	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.a.a.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.a.b	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.a.a.a	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.a.a.a.b.a	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.b.b.a	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.a.a.b.a.a.b.b	ENSGT00940000166766	ENSGT00940000154862.y.c.a #22	ENSGT00940000155031.a.a.d	ENSGT00940000154196.a	ENSGT00390000014903.v	ENSGT00940000156954	ENSGT00940000163467.a.b.a.b.d	ENSGT00940000157941	ENSGT01030000234924	ENSGT01030000234620.a.b.b.a.l	ENSGT00390000009379.d	ENSGT00940000167292.a	ENSGT00940000164137.a.c.a
Atlantic salmon	MODERN SPECIES	9	nagk (ENSSSAG00000042955)	ENSSSAG00000042915	ENSSSAG00000096717	cct7 (ENSSSAG00000041751)	ENSSSAG00000120215	ENSSSAG00000091718	ENSSSAG00000095291	ENSSSAG00000086350	ENSSSAG00000098841	ENSSSAG00000111880	ENSSSAG00000043580	ENSSSAG00000084062	ENSSSAG00000043565	rcor2 (ENSSSAG00000043335)	krcp (ENSSSAG00000043517)	ENSSSAG00000043440 #22	ENSSSAG00000088037	ENSSSAG00000093329	ENSSSAG00000112482	naa40 (ENSSSAG00000104284)	b3gat3 (ENSSSAG00000043243)	ENSSSAG00000099966	ENSSSAG00000112768	ENSSSAG00000043220	ENSSSAG00000085976	ENSSSAG00000096275	ENSSSAG00000074442	arl2 (ENSSSAG00000043089)	batf2 (ENSSSAG00000043101)	ENSSSAG00000119164	ENSSSAG00000118307
Huchen	MODERN SPECIES	9346																ENSHHUG00000038570 #22	ENSHHUG00000038563
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154862.y.c.b #22
Huchen	MODERN SPECIES	1351										si:dkeyp-72h1.1 (ENSHHUG00000029699)	tnfaip2a (ENSHHUG00000029710) #19	ENSHHUG00000029744 #19	ENSHHUG00000029748	eif5 (ENSHHUG00000029754) #20	ENSHHUG00000029804 #22	ENSHHUG00000029813 #22
Salmoninae	ANCESTRAL SPECIES	622									ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT00940000156927.`b.a	ENSGT01030000234517.H.a.e #16	ENSGT00940000164834.b.e	ENSGT01030000234613.b.a.a.c.b.f #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.y.d #22	ENSGT00390000016478.e.a #20	ENSGT00940000154862.x.a.b.a.b #22	ENSGT00950000182772.A.a.b.`b.b.h #24	ENSGT01030000234848	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT00940000163655.b
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154862.y.d #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154862.y.d #22
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00940000155507.a.b.o	ENSGT00940000154289.A.a.b.a	ENSGT00940000154209.a.a.h.b	ENSGT00390000009816.b	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000015102.a.a	ENSGT00940000154598.c.a	ENSGT00940000167479.c.a	ENSGT00940000165223.o.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000156927.`b.a.d	ENSGT01030000234517.H.a.e #16	ENSGT01030000234613.b.a.a.c.b.e #19	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT00390000016478.e.b #20	ENSGT00940000154862.y.d #22	ENSGT01030000234848.a	ENSGT00940000154862.x.a.b.a.a #22	ENSGT00950000182772.A.a.b.`b.b.g #24	ENSGT00940000163655.b	ENSGT00940000159075.B	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a	ENSGT00950000182985.a.a.b.a	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00730000111686.f
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005000497	gpr176 (ENSOTSG00005000499)	THBS1 (ENSOTSG00005000501)	katnbl1 (ENSOTSG00005000502)	emc7b (ENSOTSG00005000504)	chrm5b (ENSOTSG00005000506)	ENSOTSG00005000508	ENSOTSG00005000511	CCNK (ENSOTSG00005000512)	CCDC85C (ENSOTSG00005000516)	ENSOTSG00005000531	ENSOTSG00005000679	tnfaip2a (ENSOTSG00005000836) #19	ENSOTSG00005000867	eif5 (ENSOTSG00005000871) #20	ENSOTSG00005000952 #22	ckbb (ENSOTSG00005000965) #24	ENSOTSG00005000971	prph2lb (ENSOTSG00005000974)	KIF26A (ENSOTSG00005000983)	ENSOTSG00005000994	zbtb1 (ENSOTSG00005000995)	ENSOTSG00005000997	myh6 (ENSOTSG00005001001)	pak6b (ENSOTSG00005001005)	ENSOTSG00005001011	ENSOTSG00005001015	spint1b (ENSOTSG00005001021)	PLEKHG3 (ENSOTSG00005001030)	ENSOTSG00005001036	paplnb (ENSOTSG00005001044)
Huchen	MODERN SPECIES	1351											si:dkeyp-72h1.1 (ENSHHUG00000029699)	tnfaip2a (ENSHHUG00000029710) #19	ENSHHUG00000029744 #19	ENSHHUG00000029748	eif5 (ENSHHUG00000029754) #20	ENSHHUG00000029804 #22	ENSHHUG00000029813 #22
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1489	picalma (ENSCMIG00000014421)	eed (ENSCMIG00000014389)	hikeshi (ENSCMIG00000014377)	CCDC81 (ENSCMIG00000014361)	me3 (ENSCMIG00000014053)	fzd4 (ENSCMIG00000013939)	tmem135 (ENSCMIG00000013928)	RAB38 (ENSCMIG00000013904)	ctsc (ENSCMIG00000013900)	grm5b (ENSCMIG00000013895)	tyr (ENSCMIG00000013755)	NOX4 (ENSCMIG00000013715)	ENSCMIG00000013676	naalad2 (ENSCMIG00000013613)	chordc1a (ENSCMIG00000013595)	ENSCMIG00000013592 #22	ENSCMIG00000013585	fat3a (ENSCMIG00000013527)	ENSCMIG00000013502	SLC36A4 (ENSCMIG00000013501)	ENSCMIG00000013491	SMCO4 (ENSCMIG00000013485)	ENSCMIG00000013479	med17 (ENSCMIG00000013456)	ENSCMIG00000013442	ENSCMIG00000013439	ENSCMIG00000013435	HEPH (ENSCMIG00000013106)	panx1a (ENSCMIG00000012981)	GPR83 (ENSCMIG00000012971)	mre11a (ENSCMIG00000012782)
Elephant shark	MODERN SPECIES	1494	EVL (ENSCMIG00000015322)	eml1 (ENSCMIG00000014866)	ENSCMIG00000014719	ENSCMIG00000014716 #11	cinp (ENSCMIG00000014707) #12	tecpr2 (ENSCMIG00000014694) #14	ANKRD9 (ENSCMIG00000014685)	rcor1 (ENSCMIG00000014664) #13	TRAF3 (ENSCMIG00000014656) #15	ENSCMIG00000014649	cdc42bpb (ENSCMIG00000014601) #16	ENSCMIG00000014554	ENSCMIG00000014547 #18	ENSCMIG00000014541 #19	eif5 (ENSCMIG00000014528) #20	mark3a (ENSCMIG00000014031) #22	ENSCMIG00000013762	ckba (ENSCMIG00000013738) #24	trmt61a (ENSCMIG00000013726) #23	bag5 (ENSCMIG00000013724)	coa8 (ENSCMIG00000013723)	KLC1 (ENSCMIG00000013712) #25	xrcc3 (ENSCMIG00000013699) #26	zfyve21 (ENSCMIG00000013690) #27	ppp1r13bb (ENSCMIG00000013665) #28	atp5mj (ENSCMIG00000013653)	RD3L (ENSCMIG00000013650) #30	ENSCMIG00000013647	aspg (ENSCMIG00000013645) #32	tdrd9 (ENSCMIG00000013578) #31	ENSCMIG00000013537
Cyclostomata	DUPLICATION
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154862.ab.a #22
Lamprey	MODERN SPECIES	153												cdc42bpb (ENSPMAG00000001890) #16	iars2 (ENSPMAG00000001894)	ENSPMAG00000001925	XRCC3 (ENSPMAG00000001934) #26	ENSPMAG00000001942 #22	MRPL57 (ENSPMAG00000009966)	ENSPMAG00000001967	si:ch211-160d20.3 (ENSPMAG00000001970)
Hagfish	MODERN SPECIES	77	ENSEBUG00000003445	actr10 (ENSEBUG00000002444)	exoc5 (ENSEBUG00000016344)	ENSEBUG00000012881	psma3 (ENSEBUG00000009779)	ENSEBUG00000011726	ENSEBUG00000007920	ENSEBUG00000000635	tomm20b (ENSEBUG00000016133)	timm9 (ENSEBUG00000012051)	irf2bpl (ENSEBUG00000000627)	ENSEBUG00000006730	ENSEBUG00000011978	ENSEBUG00000008799	ENSEBUG00000014690	ENSEBUG00000014231 #22	ENSEBUG00000009902	ENSEBUG00000001332	ENSEBUG00000003677
Cyclostomata	ANCESTRAL SPECIES	672																ENSGT00940000154862.ab.b #22	ENSGT00950000182772.A.a.b #24
Hagfish	MODERN SPECIES	607	ENSEBUG00000014735	ENSEBUG00000001230	ENSEBUG00000009709	ENSEBUG00000008343	ENSEBUG00000001099	ENSEBUG00000000434	paf1 (ENSEBUG00000003008)	ENSEBUG00000013205	ENSEBUG00000010046	ENSEBUG00000016975	tmem229b (ENSEBUG00000017002)	ENSEBUG00000016687	ENSEBUG00000006752	ENSEBUG00000013959	ENSEBUG00000003226	MARK3 (ENSEBUG00000010460) #22	ckbb (ENSEBUG00000002924) #24
Cyclostomata	ANCESTRAL SPECIES	1122																ENSGT00940000154862.bb #22	ENSGT00950000182772.A.a.a ##24
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	71						ENSEBUG00000003571	ENSEBUG00000014973	ENSEBUG00000005173	RCE1 (ENSEBUG00000016397)	ENSEBUG00000007468	ahsa1a (ENSEBUG00000010589)	ENSEBUG00000004391	ENSEBUG00000011310	ENSEBUG00000016594	ENSEBUG00000012070	ENSEBUG00000016165 #22	itpkcb (ENSEBUG00000005111)	crip2 (ENSEBUG00000009051)	ENSEBUG00000010523	mta3 (ENSEBUG00000012745)	ENSEBUG00000008682	ENSEBUG00000000800	ENSEBUG00000004152	ENSEBUG00000006283	ENSEBUG00000010147	ENSEBUG00000004618	ENSEBUG00000010153	parp1 (ENSEBUG00000005820)	ENSEBUG00000009532	NXF1 (ENSEBUG00000013841)	ENSEBUG00000008282
Hagfish	MODERN SPECIES	1504						ENSEBUG00000000607	ENSEBUG00000003592	ENSEBUG00000013043	uqcc1 (ENSEBUG00000015220)	RHOB (ENSEBUG00000002113)	SLCO4A1 (ENSEBUG00000005183)	KCNF1 (ENSEBUG00000011427)	blcap (ENSEBUG00000015666)	ENSEBUG00000004172	ENSEBUG00000007491	ENSEBUG00000003878 #22	ckmb (ENSEBUG00000016175) ##24	ENSEBUG00000013421	ENSEBUG00000010543	ENSEBUG00000015674	ENSEBUG00000008954	ENSEBUG00000008970	ENSEBUG00000011063	ENSEBUG00000008599	ENSEBUG00000013527	ENSEBUG00000014917	poldip2 (ENSEBUG00000006270)	ENSEBUG00000004338	ENSEBUG00000012539	ENSEBUG00000004465	ENSEBUG00000015909
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	42		ca8 (ENSPMAG00000006273)	cpsf2 (ENSPMAG00000006205)	rab2a (ENSPMAG00000006171)	RIN2 (ENSPMAG00000006162)	ENSPMAG00000006158	ENSPMAG00000006141	med29 (ENSPMAG00000006132)	srp54 (ENSPMAG00000006078)	CHD9 (ENSPMAG00000006035)	rbl1 (ENSPMAG00000005931)	ENSPMAG00000005922	hnf4g (ENSPMAG00000005852)	lgmn (ENSPMAG00000005811)	pmt (ENSPMAG00000005798)	ENSPMAG00000005688 #22
Lamprey	MODERN SPECIES	2575																ENSPMAG00000005992 #22