Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793 #29	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00390000008200.x ##24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793 #29	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35
Marmotini	ANCESTRAL SPECIES	23	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.fb #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793.f.a ##29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163201
Marmotini_b	ANCESTRAL SPECIES	16	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.fb #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.w.a #24	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000157793.f.b #28	ENSGT00940000157793.e.a #29	ENSGT00940000161185 #30	ENSGT00940000161193	ENSGT00940000157793.f.a ##29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Arctic ground squirrel	MODERN SPECIES	29	HBEGF (ENSUPAG00010007010) #7	SLC4A9 (ENSUPAG00010007028) #8	ANKHD1 (ENSUPAG00010007490) #9	EIF4EBP3 (ENSUPAG00010007533) #10	SRA1 (ENSUPAG00010007542) #11	APBB3 (ENSUPAG00010007552) #12	ENSUPAG00010007570 #13	SLC35A4 (ENSUPAG00010007573) #14	CD14 (ENSUPAG00010007599) #15	TMCO6 (ENSUPAG00010007603) #16	ENSUPAG00010007617 #17	IK (ENSUPAG00010007621) #18	WDR55 (ENSUPAG00010007647) #19	DND1 (ENSUPAG00010007650) #20	HARS1 (ENSUPAG00010007659) #21	HARS2 (ENSUPAG00010007685) #22	PCDHAC2 (ENSUPAG00010007747) #23	ENSUPAG00010008029 #24	PCDHA10 (ENSUPAG00010008030) #25	PCDHB1 (ENSUPAG00010008038) #26	PCDHB2 (ENSUPAG00010008039) #27	ENSUPAG00010008052 #28	ENSUPAG00010008056 #29	PCDHB4 (ENSUPAG00010008061) #30	PCDHB6 (ENSUPAG00010008069) #31	ENSUPAG00010008071 #32	PCDHB7 (ENSUPAG00010008073) #33	PCDHB13 (ENSUPAG00010008078) #34	PCDHB16 (ENSUPAG00010008082) #35	ENSUPAG00010008088 #36	PCDHB14 (ENSUPAG00010008097) #37
Squirrel	MODERN SPECIES	131	HBEGF (ENSSTOG00000028116) #7	SLC4A9 (ENSSTOG00000001919) #8	ANKHD1 (ENSSTOG00000001936) #9	EIF4EBP3 (ENSSTOG00000020350) #10	SRA1 (ENSSTOG00000024229) #11	APBB3 (ENSSTOG00000001965) #12	ENSSTOG00000032302 #13	SLC35A4 (ENSSTOG00000026149) #14	CD14 (ENSSTOG00000001977) #15	TMCO6 (ENSSTOG00000028988) #16	ENSSTOG00000022532 #17	IK (ENSSTOG00000001980) #18	WDR55 (ENSSTOG00000024223) #19	DND1 (ENSSTOG00000002000) #20	HARS1 (ENSSTOG00000002007) #21	HARS2 (ENSSTOG00000002016) #22	ZMAT2 (ENSSTOG00000002025)
Alpin marmot	MODERN SPECIES		PFDN1 (ENSMMMG00000010271)	HBEGF (ENSMMMG00000010280) #7	SLC4A9 (ENSMMMG00000010288) #8	ANKHD1 (ENSMMMG00000010548) #9	EIF4EBP3 (ENSMMMG00000010610) #10	APBB3 (ENSMMMG00000010626) #12	ENSMMMG00000010657 #13	SLC35A4 (ENSMMMG00000010659) #14	CD14 (ENSMMMG00000010676) #15	TMCO6 (ENSMMMG00000010677) #16	ENSMMMG00000010699 #17	IK (ENSMMMG00000010705) #18	WDR55 (ENSMMMG00000010722) #19	DND1 (ENSMMMG00000010736) #20	HARS1 (ENSMMMG00000010747) #21	HARS2 (ENSMMMG00000010764) #22	ZMAT2 (ENSMMMG00000010817)	PCDHAC2 (ENSMMMG00000010851) #23	ENSMMMG00000011282	PCDHA10 (ENSMMMG00000011292) #25	PCDHB1 (ENSMMMG00000011303) #26	PCDHB2 (ENSMMMG00000011310) #27	PCDHB3 (ENSMMMG00000011314)	ENSMMMG00000011326 #28	ENSMMMG00000011331 ##29	ENSMMMG00000011349 #29	PCDHB4 (ENSMMMG00000011353) #30	ENSMMMG00000011371 ##29	ENSMMMG00000011393 #32	PCDHB7 (ENSMMMG00000011398) #33	PCDHB13 (ENSMMMG00000011404) #34
Eurasian red squirrel	MODERN SPECIES	15	HBEGF (ENSSVLG00005022906) #7	SLC4A9 (ENSSVLG00005022479) #8	ANKHD1 (ENSSVLG00005022311) #9	EIF4EBP3 (ENSSVLG00005022238) #10	SRA1 (ENSSVLG00005022207) #11	APBB3 (ENSSVLG00005022127) #12	ENSSVLG00005022063 #13	SLC35A4 (ENSSVLG00005022047) #14	CD14 (ENSSVLG00005022015) #15	TMCO6 (ENSSVLG00005021859) #16	ENSSVLG00005021813 #17	IK (ENSSVLG00005021647) #18	WDR55 (ENSSVLG00005021589) #19	DND1 (ENSSVLG00005021541) #20	HARS1 (ENSSVLG00005021378) #21	HARS2 (ENSSVLG00005020869) #22	ENSSVLG00005020736	ENSSVLG00005020676	ENSSVLG00005020630 ##24	ENSSVLG00005020614 #24	ENSSVLG00005020598 ##24	PCDHAC2 (ENSSVLG00005019928) #23	ENSSVLG00005019568	PCDHB1 (ENSSVLG00005019449) #26	ENSSVLG00005019345	PCDHB3 (ENSSVLG00005019267)	ENSSVLG00005019194	ENSSVLG00005019110 #30	ENSSVLG00005019088 #29	ENSSVLG00005019038 #29	ENSSVLG00005019014 #29
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793.h #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793.h #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163201
Guinea pig	MODERN SPECIES	6	SLC4A9 (ENSCPOG00000010350) #8	ANKHD1 (ENSCPOG00000011805) #9	EIF4EBP3 (ENSCPOG00000033979) #10	SRA1 (ENSCPOG00000020210) #11	APBB3 (ENSCPOG00000006384) #12	ENSCPOG00000031899 #13	SLC35A4 (ENSCPOG00000006402) #14	ENSCPOG00000024495	CD14 (ENSCPOG00000025223) #15	TMCO6 (ENSCPOG00000009172) #16	NDUFA2 (ENSCPOG00000009178) #17	IK (ENSCPOG00000009179) #18	WDR55 (ENSCPOG00000009190) #19	DND1 (ENSCPOG00000009192) #20	HARS1 (ENSCPOG00000009197) #21	HARS2 (ENSCPOG00000009203) #22	ZMAT2 (ENSCPOG00000037729)	PCDHAC1 (ENSCPOG00000009738)	ENSCPOG00000040697	PCDHA11 (ENSCPOG00000035848)	PCDHB1 (ENSCPOG00000001922) #26	ENSCPOG00000032216 #27	PCDHB4 (ENSCPOG00000030153) #30	ENSCPOG00000030349 #30	PCDHB7 (ENSCPOG00000031892) #33	ENSCPOG00000031156 #36	ENSCPOG00000001688	PCDHB15 (ENSCPOG00000036858)	TAF7 (ENSCPOG00000034331)	PCDHGA1 (ENSCPOG00000020995)	PCDHGA6 (ENSCPOG00000030704)
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712
Long-tailed chinchilla	MODERN SPECIES	125	SLC4A9 (ENSCLAG00000003623) #8	ANKHD1 (ENSCLAG00000003465) #9	EIF4EBP3 (ENSCLAG00000003391) #10	SRA1 (ENSCLAG00000003359) #11	APBB3 (ENSCLAG00000003294) #12	ENSCLAG00000003261 #13	SLC35A4 (ENSCLAG00000017727) #14	ENSCLAG00000006382	CD14 (ENSCLAG00000011992) #15	TMCO6 (ENSCLAG00000011852) #16	NDUFA2 (ENSCLAG00000011804) #17	IK (ENSCLAG00000012944) #18	WDR55 (ENSCLAG00000012803) #19	DND1 (ENSCLAG00000012746) #20	HARS1 (ENSCLAG00000012601) #21	HARS2 (ENSCLAG00000012334) #22	ZMAT2 (ENSCLAG00000017314)
Degu	DUPLICATION
Degu	MODERN SPECIES	210	ENSODEG00000002830	ANKHD1 (ENSODEG00000002733) #9	EIF4EBP3 (ENSODEG00000004026) #10	SRA1 (ENSODEG00000003997) #11	ENSODEG00000003982 #12	ENSODEG00000003539 #13	SLC35A4 (ENSODEG00000018919) #14	ENSODEG00000003419	CD14 (ENSODEG00000003404) #15	TMCO6 (ENSODEG00000003263) #16	ENSODEG00000003215 #17	ENSODEG00000003854 #18	WDR55 (ENSODEG00000003673) #19	ENSODEG00000003591 #20	ENSODEG00000002634 #21	ENSODEG00000002558 #22	ZMAT2 (ENSODEG00000002444)	ENSODEG00000002374
Degu	MODERN SPECIES	233	ROR2 (ENSODEG00000001285)	ENSODEG00000018624	NFIL3 (ENSODEG00000018647)	AUH (ENSODEG00000000932)	SYK (ENSODEG00000000792)	ENSODEG00000000742	ENSODEG00000018655	ENSODEG00000018615	GADD45G (ENSODEG00000000725)	SEMA4D (ENSODEG00000000714)	ENSODEG00000000699	SECISBP2 (ENSODEG00000000675)	ENSODEG00000000659	SHC3 (ENSODEG00000000614)	S1PR3 (ENSODEG00000018606)	ENSODEG00000000572 #22	NXNL2 (ENSODEG00000000550)	SPIN1 (ENSODEG00000001589)
Naked mole-rat female	MODERN SPECIES	25	PFDN1 (ENSHGLG00000035690)	ENSHGLG00000018639 #7	SLC4A9 (ENSHGLG00000014520) #8	ENSHGLG00000034741	ENSHGLG00000021134	ANKHD1 (ENSHGLG00000016064) #9	EIF4EBP3 (ENSHGLG00000036581) #10	SRA1 (ENSHGLG00000041135) #11	APBB3 (ENSHGLG00000011129) #12	SLC35A4 (ENSHGLG00000006436) #14	CD14 (ENSHGLG00000040499) #15	IK (ENSHGLG00000004862) #18	WDR55 (ENSHGLG00000008338) #19	DND1 (ENSHGLG00000009358) #20	HARS1 (ENSHGLG00000004453) #21	HARS2 (ENSHGLG00000006165) #22	ZMAT2 (ENSHGLG00000008187)	ENSHGLG00000046282 #24	ENSHGLG00000037379 #24	ENSHGLG00000036057 #24	ENSHGLG00000049357 #24	ENSHGLG00000037658 #24	PCDHAC2 (ENSHGLG00000005853) #23	PCDHB2 (ENSHGLG00000007925) #27	PCDHB6 (ENSHGLG00000009739) #31	ENSHGLG00000017815 #32	PCDHB5 (ENSHGLG00000038543) #29	ENSHGLG00000015342	ENSHGLG00000042757 #29	SLC25A2 (ENSHGLG00000021391)	TAF7 (ENSHGLG00000050349)