Eutheria	ANCESTRAL SPECIES	6	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00390000008200 #24	ENSGT00940000164089	ENSGT00940000163312	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Glires	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000162745 #26
Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793 #29	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00390000008200.x ##24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793 #29	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35
Marmotini	ANCESTRAL SPECIES	23	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.fb #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000157793.f.a ##29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163201
Marmotini_b	ANCESTRAL SPECIES	16	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.fb #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.w.a #24	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000157793.f.b #28	ENSGT00940000157793.e.a #29	ENSGT00940000161185 #30	ENSGT00940000161193	ENSGT00940000157793.f.a ##29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Arctic ground squirrel	MODERN SPECIES	29	HBEGF (ENSUPAG00010007010) #7	SLC4A9 (ENSUPAG00010007028) #8	ANKHD1 (ENSUPAG00010007490) #9	EIF4EBP3 (ENSUPAG00010007533) #10	SRA1 (ENSUPAG00010007542) #11	APBB3 (ENSUPAG00010007552) #12	ENSUPAG00010007570 #13	SLC35A4 (ENSUPAG00010007573) #14	CD14 (ENSUPAG00010007599) #15	TMCO6 (ENSUPAG00010007603) #16	ENSUPAG00010007617 #17	IK (ENSUPAG00010007621) #18	WDR55 (ENSUPAG00010007647) #19	DND1 (ENSUPAG00010007650) #20	HARS1 (ENSUPAG00010007659) #21	HARS2 (ENSUPAG00010007685) #22	PCDHAC2 (ENSUPAG00010007747) #23	ENSUPAG00010008029 #24	PCDHA10 (ENSUPAG00010008030) #25	PCDHB1 (ENSUPAG00010008038) #26	PCDHB2 (ENSUPAG00010008039) #27	ENSUPAG00010008052 #28	ENSUPAG00010008056 #29	PCDHB4 (ENSUPAG00010008061) #30	PCDHB6 (ENSUPAG00010008069) #31	ENSUPAG00010008071 #32	PCDHB7 (ENSUPAG00010008073) #33	PCDHB13 (ENSUPAG00010008078) #34	PCDHB16 (ENSUPAG00010008082) #35	ENSUPAG00010008088 #36	PCDHB14 (ENSUPAG00010008097) #37
Squirrel	MODERN SPECIES	131	HBEGF (ENSSTOG00000028116) #7	SLC4A9 (ENSSTOG00000001919) #8	ANKHD1 (ENSSTOG00000001936) #9	EIF4EBP3 (ENSSTOG00000020350) #10	SRA1 (ENSSTOG00000024229) #11	APBB3 (ENSSTOG00000001965) #12	ENSSTOG00000032302 #13	SLC35A4 (ENSSTOG00000026149) #14	CD14 (ENSSTOG00000001977) #15	TMCO6 (ENSSTOG00000028988) #16	ENSSTOG00000022532 #17	IK (ENSSTOG00000001980) #18	WDR55 (ENSSTOG00000024223) #19	DND1 (ENSSTOG00000002000) #20	HARS1 (ENSSTOG00000002007) #21	HARS2 (ENSSTOG00000002016) #22	ZMAT2 (ENSSTOG00000002025)
Alpin marmot	MODERN SPECIES		PFDN1 (ENSMMMG00000010271)	HBEGF (ENSMMMG00000010280) #7	SLC4A9 (ENSMMMG00000010288) #8	ANKHD1 (ENSMMMG00000010548) #9	EIF4EBP3 (ENSMMMG00000010610) #10	APBB3 (ENSMMMG00000010626) #12	ENSMMMG00000010657 #13	SLC35A4 (ENSMMMG00000010659) #14	CD14 (ENSMMMG00000010676) #15	TMCO6 (ENSMMMG00000010677) #16	ENSMMMG00000010699 #17	IK (ENSMMMG00000010705) #18	WDR55 (ENSMMMG00000010722) #19	DND1 (ENSMMMG00000010736) #20	HARS1 (ENSMMMG00000010747) #21	HARS2 (ENSMMMG00000010764) #22	ZMAT2 (ENSMMMG00000010817)	PCDHAC2 (ENSMMMG00000010851) #23	ENSMMMG00000011282	PCDHA10 (ENSMMMG00000011292) #25	PCDHB1 (ENSMMMG00000011303) #26	PCDHB2 (ENSMMMG00000011310) #27	PCDHB3 (ENSMMMG00000011314)	ENSMMMG00000011326 #28	ENSMMMG00000011331 ##29	ENSMMMG00000011349 #29	PCDHB4 (ENSMMMG00000011353) #30	ENSMMMG00000011371 ##29	ENSMMMG00000011393 #32	PCDHB7 (ENSMMMG00000011398) #33	PCDHB13 (ENSMMMG00000011404) #34
Eurasian red squirrel	MODERN SPECIES	15	HBEGF (ENSSVLG00005022906) #7	SLC4A9 (ENSSVLG00005022479) #8	ANKHD1 (ENSSVLG00005022311) #9	EIF4EBP3 (ENSSVLG00005022238) #10	SRA1 (ENSSVLG00005022207) #11	APBB3 (ENSSVLG00005022127) #12	ENSSVLG00005022063 #13	SLC35A4 (ENSSVLG00005022047) #14	CD14 (ENSSVLG00005022015) #15	TMCO6 (ENSSVLG00005021859) #16	ENSSVLG00005021813 #17	IK (ENSSVLG00005021647) #18	WDR55 (ENSSVLG00005021589) #19	DND1 (ENSSVLG00005021541) #20	HARS1 (ENSSVLG00005021378) #21	HARS2 (ENSSVLG00005020869) #22	ENSSVLG00005020736	ENSSVLG00005020676	ENSSVLG00005020630 ##24	ENSSVLG00005020614 #24	ENSSVLG00005020598 ##24	PCDHAC2 (ENSSVLG00005019928) #23	ENSSVLG00005019568	PCDHB1 (ENSSVLG00005019449) #26	ENSSVLG00005019345	PCDHB3 (ENSSVLG00005019267)	ENSSVLG00005019194	ENSSVLG00005019110 #30	ENSSVLG00005019088 #29	ENSSVLG00005019038 #29	ENSSVLG00005019014 #29
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793.h #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793.h #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163201
Guinea pig	MODERN SPECIES	6	SLC4A9 (ENSCPOG00000010350) #8	ANKHD1 (ENSCPOG00000011805) #9	EIF4EBP3 (ENSCPOG00000033979) #10	SRA1 (ENSCPOG00000020210) #11	APBB3 (ENSCPOG00000006384) #12	ENSCPOG00000031899 #13	SLC35A4 (ENSCPOG00000006402) #14	ENSCPOG00000024495	CD14 (ENSCPOG00000025223) #15	TMCO6 (ENSCPOG00000009172) #16	NDUFA2 (ENSCPOG00000009178) #17	IK (ENSCPOG00000009179) #18	WDR55 (ENSCPOG00000009190) #19	DND1 (ENSCPOG00000009192) #20	HARS1 (ENSCPOG00000009197) #21	HARS2 (ENSCPOG00000009203) #22	ZMAT2 (ENSCPOG00000037729)	PCDHAC1 (ENSCPOG00000009738)	ENSCPOG00000040697	PCDHA11 (ENSCPOG00000035848)	PCDHB1 (ENSCPOG00000001922) #26	ENSCPOG00000032216 #27	PCDHB4 (ENSCPOG00000030153) #30	ENSCPOG00000030349 #30	PCDHB7 (ENSCPOG00000031892) #33	ENSCPOG00000031156 #36	ENSCPOG00000001688	PCDHB15 (ENSCPOG00000036858)	TAF7 (ENSCPOG00000034331)	PCDHGA1 (ENSCPOG00000020995)	PCDHGA6 (ENSCPOG00000030704)
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712
Long-tailed chinchilla	MODERN SPECIES	125	SLC4A9 (ENSCLAG00000003623) #8	ANKHD1 (ENSCLAG00000003465) #9	EIF4EBP3 (ENSCLAG00000003391) #10	SRA1 (ENSCLAG00000003359) #11	APBB3 (ENSCLAG00000003294) #12	ENSCLAG00000003261 #13	SLC35A4 (ENSCLAG00000017727) #14	ENSCLAG00000006382	CD14 (ENSCLAG00000011992) #15	TMCO6 (ENSCLAG00000011852) #16	NDUFA2 (ENSCLAG00000011804) #17	IK (ENSCLAG00000012944) #18	WDR55 (ENSCLAG00000012803) #19	DND1 (ENSCLAG00000012746) #20	HARS1 (ENSCLAG00000012601) #21	HARS2 (ENSCLAG00000012334) #22	ZMAT2 (ENSCLAG00000017314)
Degu	DUPLICATION
Degu	MODERN SPECIES	210	ENSODEG00000002830	ANKHD1 (ENSODEG00000002733) #9	EIF4EBP3 (ENSODEG00000004026) #10	SRA1 (ENSODEG00000003997) #11	ENSODEG00000003982 #12	ENSODEG00000003539 #13	SLC35A4 (ENSODEG00000018919) #14	ENSODEG00000003419	CD14 (ENSODEG00000003404) #15	TMCO6 (ENSODEG00000003263) #16	ENSODEG00000003215 #17	ENSODEG00000003854 #18	WDR55 (ENSODEG00000003673) #19	ENSODEG00000003591 #20	ENSODEG00000002634 #21	ENSODEG00000002558 #22	ZMAT2 (ENSODEG00000002444)	ENSODEG00000002374
Degu	MODERN SPECIES	233	ROR2 (ENSODEG00000001285)	ENSODEG00000018624	NFIL3 (ENSODEG00000018647)	AUH (ENSODEG00000000932)	SYK (ENSODEG00000000792)	ENSODEG00000000742	ENSODEG00000018655	ENSODEG00000018615	GADD45G (ENSODEG00000000725)	SEMA4D (ENSODEG00000000714)	ENSODEG00000000699	SECISBP2 (ENSODEG00000000675)	ENSODEG00000000659	SHC3 (ENSODEG00000000614)	S1PR3 (ENSODEG00000018606)	ENSODEG00000000572 #22	NXNL2 (ENSODEG00000000550)	SPIN1 (ENSODEG00000001589)
Naked mole-rat female	MODERN SPECIES	25	PFDN1 (ENSHGLG00000035690)	ENSHGLG00000018639 #7	SLC4A9 (ENSHGLG00000014520) #8	ENSHGLG00000034741	ENSHGLG00000021134	ANKHD1 (ENSHGLG00000016064) #9	EIF4EBP3 (ENSHGLG00000036581) #10	SRA1 (ENSHGLG00000041135) #11	APBB3 (ENSHGLG00000011129) #12	SLC35A4 (ENSHGLG00000006436) #14	CD14 (ENSHGLG00000040499) #15	IK (ENSHGLG00000004862) #18	WDR55 (ENSHGLG00000008338) #19	DND1 (ENSHGLG00000009358) #20	HARS1 (ENSHGLG00000004453) #21	HARS2 (ENSHGLG00000006165) #22	ZMAT2 (ENSHGLG00000008187)	ENSHGLG00000046282 #24	ENSHGLG00000037379 #24	ENSHGLG00000036057 #24	ENSHGLG00000049357 #24	ENSHGLG00000037658 #24	PCDHAC2 (ENSHGLG00000005853) #23	PCDHB2 (ENSHGLG00000007925) #27	PCDHB6 (ENSHGLG00000009739) #31	ENSHGLG00000017815 #32	PCDHB5 (ENSHGLG00000038543) #29	ENSHGLG00000015342	ENSHGLG00000042757 #29	SLC25A2 (ENSHGLG00000021391)	TAF7 (ENSHGLG00000050349)
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Muroidea	ANCESTRAL SPECIES	4	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903.c.a	ENSGT00390000008200 #24	ENSGT00940000163903.c.b	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408	ENSGT00940000163903.c.a	ENSGT00940000163903.c.b	ENSGT00390000008200.s #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a.b #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408	ENSGT00940000163903.c.a	ENSGT00390000008200.s #24	ENSGT00940000163903.c.b	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000157793.n #29
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a.b #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164408	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793.m #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36
Chinese hamster chok1gshd	MODERN SPECIES	92	Ankhd1 (ENSCGRG00001015164) #9	Sra1 (ENSCGRG00001005557) #11	Eif4ebp3 (ENSCGRG00001014184) #10	Apbb3 (ENSCGRG00001019043) #12	ENSCGRG00001014343 #13	Slc35a4 (ENSCGRG00001003358) #14	E230025N22Rik (ENSCGRG00001005820)	ENSCGRG00001005508	Cd14 (ENSCGRG00001007873) #15	Tmco6 (ENSCGRG00001014120) #16	ENSCGRG00001022607 #17	ENSCGRG00001008041 #18	Wdr55 (ENSCGRG00001014049) #19	Dnd1 (ENSCGRG00001017900) #20	Hars (ENSCGRG00001003521) #21	Hars2 (ENSCGRG00001011372) #22	Zmat2 (ENSCGRG00001023749)	Pcdha1 (ENSCGRG00001000258)	Pcdhac2 (ENSCGRG00001015653) #23	ENSCGRG00001006214	Pcdha9 (ENSCGRG00001019026) #25	ENSCGRG00001018110	ENSCGRG00001020360 #24	Pcdhb1 (ENSCGRG00001009517) #26	ENSCGRG00001006454	Pcdhb2 (ENSCGRG00001021174) #27	ENSCGRG00001010009 #29	ENSCGRG00001000591 #30	ENSCGRG00001011604 #29	ENSCGRG00001019427 #30	ENSCGRG00001023910 #29
Golden Hamster	MODERN SPECIES	634		Ankhd1 (ENSMAUG00000000909) #9	Eif4ebp3 (ENSMAUG00000015124) #10	Sra1 (ENSMAUG00000012789) #11	ENSMAUG00000017144 #12	ENSMAUG00000017010 #13	Slc35a4 (ENSMAUG00000017981) #14	E230025N22Rik (ENSMAUG00000017725)	Cd14 (ENSMAUG00000017176) #15	Tmco6 (ENSMAUG00000016479) #16	Ndufa2 (ENSMAUG00000015843) #17	Ik (ENSMAUG00000011681) #18	Wdr55 (ENSMAUG00000002457) #19	Dnd1 (ENSMAUG00000019312) #20	Hars (ENSMAUG00000015021) #21	Hars2 (ENSMAUG00000018784) #22	Zmat2 (ENSMAUG00000016579)	Pcdha5 (ENSMAUG00000018094)	Pcdha9 (ENSMAUG00000016125) #25	Pcdhac2 (ENSMAUG00000013761) #23	Pcdhb1 (ENSMAUG00000017973) #26	Pcdhb2 (ENSMAUG00000010785) #27	ENSMAUG00000009646	Pcdhb14 (ENSMAUG00000007891) #32	Pcdhb15 (ENSMAUG00000004599) #33	Pcdhb18 (ENSMAUG00000020120) #36	Pcdhb21 (ENSMAUG00000020032)	Pcdhb22 (ENSMAUG00000019829)	Pcdhga1 (ENSMAUG00000017717)	Pcdhga3 (ENSMAUG00000017598)	Pcdhga4 (ENSMAUG00000017243)
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a.b #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408	ENSGT00940000163903.c.a	ENSGT00390000008200.s #24	ENSGT00940000163903.c.b	ENSGT00940000163312	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000157793.n #29	ENSGT00940000161185 #30
Northern American deer mouse	MODERN SPECIES	10	Slc4a9 (ENSPEMG00000010356) #8	Ankhd1 (ENSPEMG00000022614) #9	Eif4ebp3 (ENSPEMG00000030655) #10	Sra1 (ENSPEMG00000000489) #11	Apbb3 (ENSPEMG00000013849) #12	ENSPEMG00000027066 #13	Slc35a4 (ENSPEMG00000028615) #14	E230025N22Rik (ENSPEMG00000012125)	Tmco6 (ENSPEMG00000007871) #16	Ik (ENSPEMG00000012214) #18	Wdr55 (ENSPEMG00000017600) #19	ENSPEMG00000026826 #20	Hars (ENSPEMG00000007577) #21	ENSPEMG00000024534 #19	ENSPEMG00000026907 #20	Hars2 (ENSPEMG00000014993) #22	Zmat2 (ENSPEMG00000010300)	ENSPEMG00000024748	Pcdhac2 (ENSPEMG00000023816) #23	ENSPEMG00000002311 #24	ENSPEMG00000023316	Pcdhb1 (ENSPEMG00000002290) #26	Pcdhb3 (ENSPEMG00000023425)	ENSPEMG00000013166 #29	ENSPEMG00000022362 #29	ENSPEMG00000008222 #30	ENSPEMG00000012718 #29	Pcdhb14 (ENSPEMG00000024404) #32	Pcdhb15 (ENSPEMG00000007936) #33	Pcdhb19 (ENSPEMG00000016208)	ENSPEMG00000025896
Prairie vole	MODERN SPECIES	5	Hbegf (ENSMOCG00000011201) #7	Slc4a9 (ENSMOCG00000001504) #8	Ankhd1 (ENSMOCG00000009220) #9	Eif4ebp3 (ENSMOCG00000021408) #10	Sra1 (ENSMOCG00000008156) #11	Apbb3 (ENSMOCG00000018381) #12	Slc35a4 (ENSMOCG00000015009) #14	E230025N22Rik (ENSMOCG00000020033)	Cd14 (ENSMOCG00000007005) #15	Tmco6 (ENSMOCG00000019750) #16	Ndufa2 (ENSMOCG00000022078) #17	Ik (ENSMOCG00000021915) #18	Wdr55 (ENSMOCG00000015796) #19	Dnd1 (ENSMOCG00000018076) #20	Hars (ENSMOCG00000021826) #21	Hars2 (ENSMOCG00000013944) #22	Zmat2 (ENSMOCG00000012659)	Pcdha1 (ENSMOCG00000018957)	Pcdha3 (ENSMOCG00000001657)	Pcdha4 (ENSMOCG00000001186)	Pcdha5 (ENSMOCG00000015779)	Pcdha6 (ENSMOCG00000003208)	ENSMOCG00000021671	ENSMOCG00000018058	Pcdhac1 (ENSMOCG00000006144)	Pcdhac2 (ENSMOCG00000014493) #23	Pcdhb1 (ENSMOCG00000001255) #26	ENSMOCG00000018014 #27	ENSMOCG00000019432 #30	ENSMOCG00000001310 #29	ENSMOCG00000018360 #29
Murinae	ANCESTRAL SPECIES	17	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408	ENSGT00940000163903.c.a	ENSGT00390000008200.s #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Mus	ANCESTRAL SPECIES	19	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408.a	ENSGT00940000163903.c.a	ENSGT00940000163312.p.b	ENSGT00940000164408.b	ENSGT00940000163312.p.a	ENSGT00940000164036 #25	ENSGT00940000163846.b	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142
Mus_A	ANCESTRAL SPECIES	19	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408.a	ENSGT00940000163903.c.a	ENSGT00940000163312.p.b	ENSGT00940000164408.b	ENSGT00940000163312.p.a	ENSGT00940000164036 #25	ENSGT00940000163846.b	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142
Mus_B	ANCESTRAL SPECIES	19	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408.a	ENSGT00940000163903.c.a	ENSGT00940000163312.p.b	ENSGT00940000163312.p.a	ENSGT00940000164036 #25	ENSGT00940000163846.b	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23
Mouse	MODERN SPECIES	9	Slc4a9 (ENSMUSG00000024485) #8	Ankhd1 (ENSMUSG00000024483) #9	Maskbp3 (ENSMUSG00000117942)	Eif4ebp3 (ENSMUSG00000090264) #10	Sra1 (ENSMUSG00000006050) #11	Apbb3 (ENSMUSG00000117679) #12	Slc35a4 (ENSMUSG00000033272) #14	E230025N22Rik (ENSMUSG00000044719)	Cd14 (ENSMUSG00000051439) #15	Tmco6 (ENSMUSG00000006850) #16	Ndufa2 (ENSMUSG00000014294) #17	Ik (ENSMUSG00000024474) #18	Wdr55 (ENSMUSG00000042660) #19	Dnd1 (ENSMUSG00000044595) #20	Hars (ENSMUSG00000001380) #21	Hars2 (ENSMUSG00000019143) #22	Zmat2 (ENSMUSG00000001383)	Pcdha1 (ENSMUSG00000103442)	Pcdha2 (ENSMUSG00000104148)	Pcdha3 (ENSMUSG00000102312)	Pcdha4 (ENSMUSG00000104252)	Gm37013 (ENSMUSG00000103458)	Pcdha5 (ENSMUSG00000103092)	Pcdha6 (ENSMUSG00000103707)	Gm38666 (ENSMUSG00000102836)	Pcdha7 (ENSMUSG00000104318)	Gm37388 (ENSMUSG00000103125)	Pcdha8 (ENSMUSG00000103800)	Pcdha9 (ENSMUSG00000103770) #25	Pcdha10 (ENSMUSG00000007440)	Pcdha11 (ENSMUSG00000102206)
Mus_C	ANCESTRAL SPECIES	16	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846.a	ENSGT00940000164408.a	ENSGT00940000163312.p.a	ENSGT00940000164036 #25	ENSGT00940000163846.b	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27
spretus	MODERN SPECIES	9	Pfdn1 (MGP_SPRETEiJ_G0023036)	Hbegf (MGP_SPRETEiJ_G0023037) #7	Slc4a9 (MGP_SPRETEiJ_G0023038) #8	Ankhd1 (MGP_SPRETEiJ_G0023039) #9	Eif4ebp3 (MGP_SPRETEiJ_G0023040) #10	Apbb3 (MGP_SPRETEiJ_G0023041) #12	MGP_SPRETEiJ_G0023042 #14	E230025N22Rik (MGP_SPRETEiJ_G0023043)	Cd14 (MGP_SPRETEiJ_G0023044) #15	Tmco6 (MGP_SPRETEiJ_G0023045) #16	Ndufa2 (MGP_SPRETEiJ_G0023046) #17	Ik (MGP_SPRETEiJ_G0023047) #18	Wdr55 (MGP_SPRETEiJ_G0023048) #19	Dnd1 (MGP_SPRETEiJ_G0023049) #20	Hars (MGP_SPRETEiJ_G0023050) #21	Hars2 (MGP_SPRETEiJ_G0023051) #22	Zmat2 (MGP_SPRETEiJ_G0023052)	MGP_SPRETEiJ_G0023053	Pcdha1 (MGP_SPRETEiJ_G0023054)	Pcdha2 (MGP_SPRETEiJ_G0023055)	Pcdha3 (MGP_SPRETEiJ_G0023056)	MGP_SPRETEiJ_G0023057	MGP_SPRETEiJ_G0023058	MGP_SPRETEiJ_G0023059	Pcdha8 (MGP_SPRETEiJ_G0023060)	Pcdha9 (MGP_SPRETEiJ_G0023061) #25	Pcdha10 (MGP_SPRETEiJ_G0023062)	Pcdha11 (MGP_SPRETEiJ_G0023063)	Pcdha12 (MGP_SPRETEiJ_G0023064)	Pcdhac1 (MGP_SPRETEiJ_G0023065)	Pcdhac2 (MGP_SPRETEiJ_G0023066) #23
Steppe mouse	MODERN SPECIES	2841	Ankhd1 (ENSMSIG00000029982) #9	ENSMSIG00000031650	ENSMSIG00000031651 #11	Eif4ebp3 (ENSMSIG00000031654) #10	Apbb3 (ENSMSIG00000031665) #12	ENSMSIG00000031668 #13	Slc35a4 (ENSMSIG00000031671) #14	E230025N22Rik (ENSMSIG00000031672)	Cd14 (ENSMSIG00000031676) #15	Tmco6 (ENSMSIG00000031677) #16	Ndufa2 (ENSMSIG00000031679) #17	Ik (ENSMSIG00000031680) #18	Wdr55 (ENSMSIG00000031682) #19	Dnd1 (ENSMSIG00000031684) #20	Hars (ENSMSIG00000031685) #21	Hars2 (ENSMSIG00000031687) #22	Zmat2 (ENSMSIG00000031688)	Pcdha1 (ENSMSIG00000031696)	Pcdha2 (ENSMSIG00000031698)	Pcdha3 (ENSMSIG00000031700)
Ryukyu mouse	MODERN SPECIES	9	Pfdn1 (MGP_CAROLIEiJ_G0022124)	Hbegf (MGP_CAROLIEiJ_G0022125) #7	Slc4a9 (MGP_CAROLIEiJ_G0022126) #8	Ankhd1 (MGP_CAROLIEiJ_G0022127) #9	Eif4ebp3 (MGP_CAROLIEiJ_G0022128) #10	Apbb3 (MGP_CAROLIEiJ_G0022129) #12	Slc35a4 (MGP_CAROLIEiJ_G0022130) #14	E230025N22Rik (MGP_CAROLIEiJ_G0022131)	Cd14 (MGP_CAROLIEiJ_G0022132) #15	Tmco6 (MGP_CAROLIEiJ_G0022133) #16	Ndufa2 (MGP_CAROLIEiJ_G0022134) #17	Ik (MGP_CAROLIEiJ_G0022135) #18	Wdr55 (MGP_CAROLIEiJ_G0022136) #19	Dnd1 (MGP_CAROLIEiJ_G0022137) #20	Hars (MGP_CAROLIEiJ_G0022138) #21	Hars2 (MGP_CAROLIEiJ_G0022139) #22	Zmat2 (MGP_CAROLIEiJ_G0022140)	Pcdha1 (MGP_CAROLIEiJ_G0022141)	Pcdha2 (MGP_CAROLIEiJ_G0022142)	Pcdha3 (MGP_CAROLIEiJ_G0022143)	MGP_CAROLIEiJ_G0022144	MGP_CAROLIEiJ_G0022145	Pcdha5 (MGP_CAROLIEiJ_G0022146)	MGP_CAROLIEiJ_G0022147	MGP_CAROLIEiJ_G0022148	MGP_CAROLIEiJ_G0022149	Pcdha8 (MGP_CAROLIEiJ_G0022150)	Pcdha9 (MGP_CAROLIEiJ_G0022151) #25	Pcdha10 (MGP_CAROLIEiJ_G0022152)	Pcdha11 (MGP_CAROLIEiJ_G0022153)	Pcdha12 (MGP_CAROLIEiJ_G0022154)
Shrew mouse	MODERN SPECIES	6	Pfdn1 (MGP_PahariEiJ_G0018858)	Hbegf (MGP_PahariEiJ_G0018859) #7	Slc4a9 (MGP_PahariEiJ_G0018860) #8	Ankhd1 (MGP_PahariEiJ_G0018861) #9	Eif4ebp3 (MGP_PahariEiJ_G0018862) #10	Apbb3 (MGP_PahariEiJ_G0018863) #12	Slc35a4 (MGP_PahariEiJ_G0018864) #14	E230025N22Rik (MGP_PahariEiJ_G0018865)	Cd14 (MGP_PahariEiJ_G0018866) #15	Tmco6 (MGP_PahariEiJ_G0018867) #16	Ndufa2 (MGP_PahariEiJ_G0018868) #17	Ik (MGP_PahariEiJ_G0018869) #18	Wdr55 (MGP_PahariEiJ_G0018870) #19	Dnd1 (MGP_PahariEiJ_G0018871) #20	Hars (MGP_PahariEiJ_G0018872) #21	Hars2 (MGP_PahariEiJ_G0018873) #22	Zmat2 (MGP_PahariEiJ_G0018874)	Pcdha1 (MGP_PahariEiJ_G0018875)	Pcdha2 (MGP_PahariEiJ_G0018876)	Pcdha3 (MGP_PahariEiJ_G0018877)	MGP_PahariEiJ_G0018878	MGP_PahariEiJ_G0018879	Pcdha5 (MGP_PahariEiJ_G0018880)	Pcdha6 (MGP_PahariEiJ_G0018881)	MGP_PahariEiJ_G0018882	Pcdha7 (MGP_PahariEiJ_G0018883)	MGP_PahariEiJ_G0018884	Pcdha8 (MGP_PahariEiJ_G0018885)	Pcdha9 (MGP_PahariEiJ_G0018886) #25	Pcdha10 (MGP_PahariEiJ_G0018887)	Pcdha11 (MGP_PahariEiJ_G0018888)
Rat	MODERN SPECIES	9	Pfdn1 (ENSRNOG00000018653)	Hbegf (ENSRNOG00000018646) #7	Slc4a9 (ENSRNOG00000018525) #8	Eif4ebp3 (ENSRNOG00000030247) #9	Sra1 (ENSRNOG00000018089) #11	Apbb3 (ENSRNOG00000017849) #12	Slc35a4 (ENSRNOG00000002908) #14	RGD1565779 (ENSRNOG00000066557)	ENSRNOG00000064875	Cd14 (ENSRNOG00000017819) #15	Tmco6 (ENSRNOG00000017718) #16	Ndufa2 (ENSRNOG00000017571) #17	Wdr55 (ENSRNOG00000017251) #19	Dnd1 (ENSRNOG00000016894) #20	Hars1 (ENSRNOG00000028105) #21	Zmat2 (ENSRNOG00000016087) #22	Pcdha5 (ENSRNOG00000020119) #23	ENSRNOG00000063467 #24	Pcdhb1 (ENSRNOG00000020103) #26	Pcdhb2 (ENSRNOG00000039476) #27	Pcdhb3 (ENSRNOG00000020095)	Pcdhb5 (ENSRNOG00000020084) #30	Pcdhb7 (ENSRNOG00000046264) #30	Pcdhb8 (ENSRNOG00000020073) #29	ENSRNOG00000063843	Pcdhb9 (ENSRNOG00000020072) #30	Pcdhb10 (ENSRNOG00000029244) #29	Pcdhb11 (ENSRNOG00000020066) #29	Pcdhb12 (ENSRNOG00000033719) #29	Pcdhb6l (ENSRNOG00000020062) #31	LOC108348201 (ENSRNOG00000020054) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	922		ENSNGAG00000009119 #9	Eif4ebp3 (ENSNGAG00000016353) #10	Sra1 (ENSNGAG00000017765) #11	Apbb3 (ENSNGAG00000018901) #12	ENSNGAG00000020792 #13	Slc35a4 (ENSNGAG00000007770) #14	E230025N22Rik (ENSNGAG00000021337)	Cd14 (ENSNGAG00000022646) #15	Tmco6 (ENSNGAG00000023279) #16	Ndufa2 (ENSNGAG00000023938) #17	Ik (ENSNGAG00000002719) #18	Wdr55 (ENSNGAG00000018082) #19	Dnd1 (ENSNGAG00000018511) #20	Hars (ENSNGAG00000019799) #21	Hars2 (ENSNGAG00000000750) #22	Zmat2 (ENSNGAG00000009406)	Pcdha1 (ENSNGAG00000007675)	Pcdha2 (ENSNGAG00000011038)	Pcdha3 (ENSNGAG00000009239)	ENSNGAG00000010860	Pcdha5 (ENSNGAG00000014115)	Pcdha6 (ENSNGAG00000015840)	ENSNGAG00000017405	ENSNGAG00000009546	Pcdha9 (ENSNGAG00000010166) #25	ENSNGAG00000018352	Pcdha12 (ENSNGAG00000019551)	Pcdhac1 (ENSNGAG00000021466)	Pcdhac2 (ENSNGAG00000021791) #23	Pcdhb1 (ENSNGAG00000010987) #26
Lesser Egyptian jerboa	MODERN SPECIES	48	Slc4a9 (ENSJJAG00000001802) #8	Ankhd1 (ENSJJAG00000017997) #9	Eif4ebp3 (ENSJJAG00000016625) #10	Sra1 (ENSJJAG00000014326) #11	Apbb3 (ENSJJAG00000000643) #12	ENSJJAG00000021749 #13	Slc35a4 (ENSJJAG00000005636) #14	E230025N22Rik (ENSJJAG00000022274)	Cd14 (ENSJJAG00000012492) #15	Tmco6 (ENSJJAG00000024300) #16	Ndufa2 (ENSJJAG00000023853) #17	Ik (ENSJJAG00000000529) #18	Wdr55 (ENSJJAG00000023700) #19	Dnd1 (ENSJJAG00000023986) #20	Hars (ENSJJAG00000022965) #21	Hars2 (ENSJJAG00000014458) #22	ENSJJAG00000003703
Kangaroo rat	MODERN SPECIES	369	Cystm1 (ENSDORG00000025347)	Pfdn1 (ENSDORG00000028430)	Hbegf (ENSDORG00000012536) #7	ENSDORG00000024160	Slc4a9 (ENSDORG00000012541) #8	Ankhd1 (ENSDORG00000001160) #9	Apbb3 (ENSDORG00000001164) #12	ENSDORG00000025601 #13	Slc35a4 (ENSDORG00000001165) #14	Tmco6 (ENSDORG00000006580) #16	Ndufa2 (ENSDORG00000006581) #17	ENSDORG00000006584 #18	Wdr55 (ENSDORG00000014551) #19	Dnd1 (ENSDORG00000014552) #20	Hars (ENSDORG00000014553) #21	Hars2 (ENSDORG00000014555) #22	Zmat2 (ENSDORG00000014559)	Pcdha3 (ENSDORG00000026940)	Pcdha6 (ENSDORG00000026516)	ENSDORG00000023369 #25	Pcdhac2 (ENSDORG00000027887) #23	Pcdhb1 (ENSDORG00000002729) #26	ENSDORG00000029763 #27	ENSDORG00000029862	ENSDORG00000003601 #29	ENSDORG00000027539 #29	ENSDORG00000023172 #32	Pcdhb19 (ENSDORG00000029764)	Pcdhb21 (ENSDORG00000011185)	Taf7 (ENSDORG00000029372)	Pcdhgb1 (ENSDORG00000027602)
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000168418	ENSGT00940000163424	ENSGT00940000160861	ENSGT00940000163837.B
Rabbit	MODERN SPECIES	14	HBEGF (ENSOCUG00000015909) #7	SLC4A9 (ENSOCUG00000015920) #8	ANKHD1 (ENSOCUG00000015943) #9	EIF4EBP3 (ENSOCUG00000034094) #10	ENSOCUG00000021569 #11	APBB3 (ENSOCUG00000009817) #12	ENSOCUG00000032814 #13	SLC35A4 (ENSOCUG00000009816) #14	CD14 (ENSOCUG00000004218) #15	TMCO6 (ENSOCUG00000004236) #16	NDUFA2 (ENSOCUG00000004237) #17	IK (ENSOCUG00000004223) #18	WDR55 (ENSOCUG00000026709) #19	DND1 (ENSOCUG00000004240) #20	HARS1 (ENSOCUG00000004243) #21	HARS2 (ENSOCUG00000004250) #22	ZMAT2 (ENSOCUG00000004255)	ENSOCUG00000030751	PCDHAC2 (ENSOCUG00000008769) #23	ENSOCUG00000031387	ENSOCUG00000002575 #24	ENSOCUG00000032864	ENSOCUG00000035800 #24	PCDHB1 (ENSOCUG00000007406) #26	ENSOCUG00000038861	ENSOCUG00000004563	ENSOCUG00000033336	PCDHB4 (ENSOCUG00000004555) #30	PCDHB5 (ENSOCUG00000004558) #29	PCDHB16 (ENSOCUG00000039460) #35	ENSOCUG00000010930 #36
Tree shrew	MODERN SPECIES	862							CYSTM1 (ENSTBEG00000001488)	HBEGF (ENSTBEG00000001725) #7	SLC4A9 (ENSTBEG00000002352) #8	ANKHD1 (ENSTBEG00000003619) #9	ENSTBEG00000005500 #16	NDUFA2 (ENSTBEG00000005978) #17	WDR55 (ENSTBEG00000006347) #19	DND1 (ENSTBEG00000006754) #20	HARS1 (ENSTBEG00000006968) #21	HARS2 (ENSTBEG00000007467) #22	ENSTBEG00000007828
Primates	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903	ENSGT00390000008200 #24	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.cb #17	ENSGT00940000153727.b.m #18	ENSGT00940000153727.a #19	ENSGT00940000159225.g #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903.a	ENSGT00940000163312.j	ENSGT00940000163903.b	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Gibbon	MODERN SPECIES	11	HBEGF (ENSNLEG00000009220) #7	SLC4A9 (ENSNLEG00000009225) #8	ANKHD1 (ENSNLEG00000009235) #9	SRA1 (ENSNLEG00000034424) #11	ENSNLEG00000009275 #12	ENSNLEG00000032877	ENSNLEG00000009304 #13	ENSNLEG00000034768	CD14 (ENSNLEG00000009307) #15	TMCO6 (ENSNLEG00000009308) #16	ENSNLEG00000009325 #17	IK (ENSNLEG00000009329) #18	WDR55 (ENSNLEG00000033658) #19	DND1 (ENSNLEG00000034318) #20	HARS1 (ENSNLEG00000009389) #21	HARS2 (ENSNLEG00000009427) #22	ENSNLEG00000009450	ENSNLEG00000009485	PCDHAC2 (ENSNLEG00000018464) #23	PCDHB3 (ENSNLEG00000027630)	PCDHB4 (ENSNLEG00000029366) #30	PCDHB5 (ENSNLEG00000009491) #29	ENSNLEG00000009493 #32	ENSNLEG00000028488	ENSNLEG00000033041	ENSNLEG00000009502 #36	PCDHB10 (ENSNLEG00000027263) #36	ENSNLEG00000028941	PCDHB13 (ENSNLEG00000018472) #34	PCDHB14 (ENSNLEG00000035733) #37	PCDHB15 (ENSNLEG00000029099)
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.cb #17	ENSGT00940000153727.b.m #18	ENSGT00940000153727.a #19	ENSGT00940000159225.g #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903.a	ENSGT00940000163312.j	ENSGT00940000163903.b	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Orangutan	MODERN SPECIES	18	PFDN1 (ENSPPYG00000030565)	HBEGF (ENSPPYG00000015852) #7	SLC4A9 (ENSPPYG00000015853) #8	ANKHD1 (ENSPPYG00000015854) #9	EIF4EBP3 (ENSPPYG00000041086) #10	SRA1 (ENSPPYG00000015855) #11	APBB3 (ENSPPYG00000015856) #12	SLC35A4 (ENSPPYG00000015857) #14	CD14 (ENSPPYG00000015858) #15	TMCO6 (ENSPPYG00000015859) #16	NDUFA2 (ENSPPYG00000036662) #17	IK (ENSPPYG00000015861) #18	WDR55 (ENSPPYG00000015862) #19	DND1 (ENSPPYG00000015863) #20	HARS1 (ENSPPYG00000015864) #21	HARS2 (ENSPPYG00000015865) #22	ZMAT2 (ENSPPYG00000015866)	PCDHAC2 (ENSPPYG00000015871) #23	ENSPPYG00000030326	PCDHB1 (ENSPPYG00000015874) #26	ENSPPYG00000041606	PCDHB3 (ENSPPYG00000030794)	PCDHB4 (ENSPPYG00000015876) #30	PCDHB5 (ENSPPYG00000015877) #29	ENSPPYG00000033454 #32	PCDHB7 (ENSPPYG00000036784) #33	PCDHB8 (ENSPPYG00000015878)	PCDHB9 (ENSPPYG00000032781) #36	PCDHB10 (ENSPPYG00000034983) #36	ENSPPYG00000037312	ENSPPYG00000034174
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000005922.b.d.b.b.a #22
Gorilla	MODERN SPECIES	18	ANKHD1 (ENSGGOG00000000288) #9	SRA1 (ENSGGOG00000042935) #11	APBB3 (ENSGGOG00000015880) #12	ENSGGOG00000004098 #13	ENSGGOG00000037182	CD14 (ENSGGOG00000010370) #15	TMCO6 (ENSGGOG00000013364) #16	ENSGGOG00000013369 #17	IK (ENSGGOG00000013374) #18	WDR55 (ENSGGOG00000013388) #19	ENSGGOG00000042535 #20	ENSGGOG00000013169 #21	ENSGGOG00000025477 #21	ENSGGOG00000044128 #20	HARS2 (ENSGGOG00000013177) #22	ENSGGOG00000041947 #22	ZMAT2 (ENSGGOG00000005121)	PCDHAC2 (ENSGGOG00000000665) #23	ENSGGOG00000007051	ENSGGOG00000008247	ENSGGOG00000042273	PCDHB3 (ENSGGOG00000008302)	PCDHB4 (ENSGGOG00000013194) #30	PCDHB5 (ENSGGOG00000008995) #29	PCDHB6 (ENSGGOG00000034817) #31	ENSGGOG00000036986 #32	PCDHB7 (ENSGGOG00000041339) #33	ENSGGOG00000040231	PCDHB10 (ENSGGOG00000013190) #36	ENSGGOG00000036260	PCDHB12 (ENSGGOG00000008290)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.cb #17	ENSGT00940000153727.b.m #18	ENSGT00940000153727.a #19	ENSGT00940000159225.g #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903.a	ENSGT00940000163312.j	ENSGT00940000163903.b	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Gorilla	MODERN SPECIES	18	SLC4A9 (ENSGGOG00000000287) #8	ANKHD1 (ENSGGOG00000000288) #9	SRA1 (ENSGGOG00000042935) #11	APBB3 (ENSGGOG00000015880) #12	ENSGGOG00000004098 #13	ENSGGOG00000037182	CD14 (ENSGGOG00000010370) #15	TMCO6 (ENSGGOG00000013364) #16	ENSGGOG00000013369 #17	IK (ENSGGOG00000013374) #18	WDR55 (ENSGGOG00000013388) #19	ENSGGOG00000042535 #20	ENSGGOG00000013169 #21	ENSGGOG00000025477 #21	ENSGGOG00000044128 #20	HARS2 (ENSGGOG00000013177) #22	ENSGGOG00000041947 #22	ZMAT2 (ENSGGOG00000005121)	PCDHAC2 (ENSGGOG00000000665) #23	ENSGGOG00000007051	ENSGGOG00000008247	ENSGGOG00000042273	PCDHB3 (ENSGGOG00000008302)	PCDHB4 (ENSGGOG00000013194) #30	PCDHB5 (ENSGGOG00000008995) #29	PCDHB6 (ENSGGOG00000034817) #31	ENSGGOG00000036986 #32	PCDHB7 (ENSGGOG00000041339) #33	ENSGGOG00000040231	PCDHB10 (ENSGGOG00000013190) #36	ENSGGOG00000036260
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.cb #17	ENSGT00940000153727.b.m #18	ENSGT00940000153727.a #19	ENSGT00940000159225.g #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163903.a	ENSGT00940000163312.j	ENSGT00940000163903.b	ENSGT00940000163312.i	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Human	MODERN SPECIES	17	HBEGF (ENSG00000113070) #7	SLC4A9 (ENSG00000113073) #8	ANKHD1 (ENSG00000131503) #9	ANKHD1-EIF4EBP3 (ENSG00000254996)	SRA1 (ENSG00000213523) #11	EIF4EBP3 (ENSG00000243056) #10	APBB3 (ENSG00000113108) #12	SLC35A4 (ENSG00000176087) #14	CD14 (ENSG00000170458) #15	NDUFA2 (ENSG00000131495) #17	TMCO6 (ENSG00000113119) #16	IK (ENSG00000113141) #18	WDR55 (ENSG00000120314) #19	DND1 (ENSG00000256453) #20	HARS1 (ENSG00000170445) #21	HARS2 (ENSG00000112855) #22	ZMAT2 (ENSG00000146007)	PCDHA1 (ENSG00000204970)	PCDHA2 (ENSG00000204969)	PCDHA3 (ENSG00000255408)	PCDHA4 (ENSG00000204967)	PCDHA5 (ENSG00000204965)	PCDHA6 (ENSG00000081842)	PCDHA7 (ENSG00000204963)	PCDHA8 (ENSG00000204962)	PCDHA9 (ENSG00000204961)	PCDHA10 (ENSG00000250120) #25	PCDHA11 (ENSG00000249158)	PCDHA12 (ENSG00000251664) #25	PCDHA13 (ENSG00000239389)	PCDHAC1 (ENSG00000248383)
Pan	ANCESTRAL SPECIES	10	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.cb #17	ENSGT00940000153727.b.m #18	ENSGT00940000153727.a #19	ENSGT00940000159225.g #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000161193	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33
Bonobo	MODERN SPECIES	18	PFDN1 (ENSPPAG00000029009)	HBEGF (ENSPPAG00000039648) #7	SLC4A9 (ENSPPAG00000005338) #8	ANKHD1 (ENSPPAG00000006129) #9	SRA1 (ENSPPAG00000032469) #11	APBB3 (ENSPPAG00000039248) #12	ENSPPAG00000036511 #13	ENSPPAG00000040115	CD14 (ENSPPAG00000041409) #15	TMCO6 (ENSPPAG00000037562) #16	ENSPPAG00000029576 #17	IK (ENSPPAG00000017619) #18	WDR55 (ENSPPAG00000042662) #19	DND1 (ENSPPAG00000031543) #20	HARS1 (ENSPPAG00000039715) #21	HARS2 (ENSPPAG00000039406) #22	ZMAT2 (ENSPPAG00000034165)	PCDHA1 (ENSPPAG00000030806)	PCDHA3 (ENSPPAG00000021393)	PCDHA4 (ENSPPAG00000015078)	PCDHA5 (ENSPPAG00000028190)	PCDHAC2 (ENSPPAG00000024384) #23	PCDHA11 (ENSPPAG00000028775)	PCDHB1 (ENSPPAG00000008820) #26	ENSPPAG00000034561	PCDHB2 (ENSPPAG00000035562) #27	PCDHB3 (ENSPPAG00000009539)	PCDHB5 (ENSPPAG00000000875) #29	PCDHB6 (ENSPPAG00000004197) #31	ENSPPAG00000038399 #32	PCDHB7 (ENSPPAG00000017091) #33
Chimpanzee	MODERN SPECIES	18	PFDN1 (ENSPTRG00000017310)	HBEGF (ENSPTRG00000017311) #7	SLC4A9 (ENSPTRG00000017312) #8	EIF4EBP3 (ENSPTRG00000047729) #9	SRA1 (ENSPTRG00000017314) #11	APBB3 (ENSPTRG00000033999) #12	SLC35A4 (ENSPTRG00000017316) #13	ENSPTRG00000049309	CD14 (ENSPTRG00000028584) #15	TMCO6 (ENSPTRG00000017320) #16	NDUFA2 (ENSPTRG00000017321) #17	IK (ENSPTRG00000046901) #18	WDR55 (ENSPTRG00000017323) #19	DND1 (ENSPTRG00000017324) #20	HARS1 (ENSPTRG00000017325) #21	HARS2 (ENSPTRG00000017326) #22	ZMAT2 (ENSPTRG00000017327)	PCDHA2 (ENSPTRG00000017328) #23	PCDHB1 (ENSPTRG00000017330) #26	ENSPTRG00000046002	ENSPTRG00000049042 #27	PCDHB4 (ENSPTRG00000017333) #30	ENSPTRG00000047767	PCDHB5 (ENSPTRG00000017334) #29	PCDHB6 (ENSPTRG00000017335) #31	PCDHB17 (ENSPTRG00000032486) #32	ENSPTRG00000049066 #33	PCDHB16 (ENSPTRG00000017338) #35	PCDHB9 (ENSPTRG00000028558) #36	PCDHB10 (ENSPTRG00000032485) #36	PCDHB11 (ENSPTRG00000050672)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00390000008200 #24	ENSGT00940000163312.i	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29
Rhinopithecus	ANCESTRAL SPECIES	17	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a.f #19	ENSGT00940000153727.a.e #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000164093 #35	ENSGT00940000163508.c #36	ENSGT00940000163201.a.b	ENSGT00940000163201.a.a	ENSGT00940000164011 #34	ENSGT00940000163786 #32	ENSGT00940000163201.b
Black snub-nosed monkey	MODERN SPECIES	1063		METTL7A (ENSRBIG00000039865)	TMPRSS12 (ENSRBIG00000033759)	ATF1 (ENSRBIG00000030964)	DIP2B (ENSRBIG00000003322)	ENSRBIG00000038857	FAM186A (ENSRBIG00000031479)	ENSRBIG00000034615	ENSRBIG00000025534	NDUFA2 (ENSRBIG00000032428) #17	IK (ENSRBIG00000041959) #18	WDR55 (ENSRBIG00000043936) #19	ENSRBIG00000038113 #19	DND1 (ENSRBIG00000036511) #20	HARS1 (ENSRBIG00000028934) #21	HARS2 (ENSRBIG00000036529) #22	ZMAT2 (ENSRBIG00000031072)
Golden snub-nosed monkey	MODERN SPECIES	2661	PFDN1 (ENSRROG00000040145)	HBEGF (ENSRROG00000030102) #7	SLC4A9 (ENSRROG00000034854) #8	ANKHD1 (ENSRROG00000039204) #9	ENSRROG00000004069	SRA1 (ENSRROG00000011630) #11	APBB3 (ENSRROG00000036652) #12	ENSRROG00000035897 #13	CD14 (ENSRROG00000038241) #15	TMCO6 (ENSRROG00000035531) #16	ENSRROG00000044049 #17	IK (ENSRROG00000030823) #18	ENSRROG00000041702 #19	DND1 (ENSRROG00000039329) #20	HARS1 (ENSRROG00000033541) #21	HARS2 (ENSRROG00000036375) #22	ZMAT2 (ENSRROG00000032700)	PCDHAC2 (ENSRROG00000043490) #23	PCDHA8 (ENSRROG00000029015)	ENSRROG00000006327	PCDHB4 (ENSRROG00000038919) #30	PCDHB5 (ENSRROG00000022029) #29	ENSRROG00000038377 #32	ENSRROG00000041778	PCDHB14 (ENSRROG00000003674) #37	PCDHB15 (ENSRROG00000026845)	ENSRROG00000016468	PCDHGA4 (ENSRROG00000031416)	PCDHGB3 (ENSRROG00000041977)	DIAPH1 (ENSRROG00000036504)	HDAC3 (ENSRROG00000026471)
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F.c #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00390000008200 #24	ENSGT00940000163312.i	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29
Vervet Monkey	MODERN SPECIES	15	PFDN1 (ENSCSAG00000012913)	HBEGF (ENSCSAG00000012908) #7	SLC4A9 (ENSCSAG00000012893) #8	ANKHD1 (ENSCSAG00000012854) #9	EIF4EBP3 (ENSCSAG00000012830) #10	SRA1 (ENSCSAG00000012824) #11	APBB3 (ENSCSAG00000012804) #12	SLC35A4 (ENSCSAG00000000493) #14	CD14 (ENSCSAG00000012743) #15	TMCO6 (ENSCSAG00000012735) #16	NDUFA2 (ENSCSAG00000012711) #17	IK (ENSCSAG00000012695) #18	WDR55 (ENSCSAG00000012681) #19	DND1 (ENSCSAG00000012677) #20	HARS1 (ENSCSAG00000012664) #21	HARS2 (ENSCSAG00000012655) #22	ZMAT2 (ENSCSAG00000012639)	PCDHA1 (ENSCSAG00000012633)	ENSCSAG00000012618 #24	PCDHA9 (ENSCSAG00000012611)	PCDHAC2 (ENSCSAG00000012587) #23	PCDHB1 (ENSCSAG00000000492) #26	PCDHB2 (ENSCSAG00000000491) #27	PCDHB3 (ENSCSAG00000000490)	PCDHB4 (ENSCSAG00000000489) #30	PCDHB5 (ENSCSAG00000000488) #29	PCDHB6 (ENSCSAG00000000487) #31	PCDHB7 (ENSCSAG00000012530) #33	PCDHB8 (ENSCSAG00000012515)	PCDHB12 (ENSCSAG00000012510)	PCDHB14 (ENSCSAG00000012505) #37
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F.c #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F.c #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163903	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000165899	ENSGT00940000164093 #35	ENSGT00940000163508.c #36	ENSGT00940000168418
Pig-tailed macaque	MODERN SPECIES	383	PFDN1 (ENSMNEG00000038519)	HBEGF (ENSMNEG00000029451) #7	SLC4A9 (ENSMNEG00000044652) #8	ANKHD1 (ENSMNEG00000030029) #9	SRA1 (ENSMNEG00000029401) #11	APBB3 (ENSMNEG00000029415) #12	ENSMNEG00000040672 #13	ENSMNEG00000040012	CD14 (ENSMNEG00000031928) #15	TMCO6 (ENSMNEG00000037241) #16	NDUFA2 (ENSMNEG00000033708) #17	IK (ENSMNEG00000020155) #18	WDR55 (ENSMNEG00000042797) #19	DND1 (ENSMNEG00000038956) #20	HARS1 (ENSMNEG00000020918) #21	HARS2 (ENSMNEG00000040270) #22	ZMAT2 (ENSMNEG00000031600)	PCDHA8 (ENSMNEG00000008879)	PCDHAC2 (ENSMNEG00000039616) #23	PCDHB1 (ENSMNEG00000003349) #26	ENSMNEG00000025056	ENSMNEG00000026473	PCDHB4 (ENSMNEG00000036578) #30	ENSMNEG00000032300 #32	PCDHB10 (ENSMNEG00000023270) #36	ENSMNEG00000040142	PCDHB14 (ENSMNEG00000026635) #37	ENSMNEG00000026891	PCDHGA10 (ENSMNEG00000031767)	PCDHGA4 (ENSMNEG00000029363)	DIAPH1 (ENSMNEG00000034458)
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000164709.a.b.b.a.b.a.a.b	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00950000182827.F.c #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT01100000263493.b.a.a.a.b.b	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000165899	ENSGT00940000164093 #35	ENSGT00940000163508.c #36	ENSGT00940000168418	ENSGT00940000163362 #37
Crab-eating macaque	MODERN SPECIES	16	SLC4A9 (ENSMFAG00000033873) #8	ENSMFAG00000061909	ANKHD1 (ENSMFAG00000041567) #9	SRA1 (ENSMFAG00000007347) #11	APBB3 (ENSMFAG00000001205) #12	SLC35A4 (ENSMFAG00000041351) #14	ENSMFAG00000058854	CD14 (ENSMFAG00000025943) #15	ENSMFAG00000058253	TMCO6 (ENSMFAG00000034339) #16	IK (ENSMFAG00000040961) #18	NDUFA2 (ENSMFAG00000049634) #17	WDR55 (ENSMFAG00000001095) #19	DND1 (ENSMFAG00000003284) #20	HARS1 (ENSMFAG00000002630) #21	HARS2 (ENSMFAG00000003090) #22	ZMAT2 (ENSMFAG00000037329)	PCDHA4 (ENSMFAG00000054472)	PCDHAC2 (ENSMFAG00000043753) #23	ENSMFAG00000061386	PCDHB1 (ENSMFAG00000021230) #26	ENSMFAG00000051210	PCDHB3 (ENSMFAG00000003623)	PCDHB4 (ENSMFAG00000003385) #30	ENSMFAG00000047273 #32	PCDHB8 (ENSMFAG00000052129)	PCDHB16 (ENSMFAG00000026752) #35	PCDHB10 (ENSMFAG00000055499) #36	ENSMFAG00000051593	PCDHB14 (ENSMFAG00000005051) #37	SLC25A2 (ENSMFAG00000027395)
Rhesus	MODERN SPECIES	16	HBEGF (ENSMMUG00000060742) #7	SLC4A9 (ENSMMUG00000003723) #8	ENSMMUG00000063513	EIF4EBP3 (ENSMMUG00000019582) #9	APBB3 (ENSMMUG00000001707) #12	SLC35A4 (ENSMMUG00000001725) #14	ENSMMUG00000062326	CD14 (ENSMMUG00000010007) #15	ENSMMUG00000060632	TMCO6 (ENSMMUG00000018246) #16	NDUFA2 (ENSMMUG00000056796) #17	IK (ENSMMUG00000010008) #18	WDR55 (ENSMMUG00000058653) #19	DND1 (ENSMMUG00000052950) #20	HARS1 (ENSMMUG00000004481) #21	HARS2 (ENSMMUG00000004483) #22	ZMAT2 (ENSMMUG00000004484)	PCDHAC2 (ENSMMUG00000014571) #23	PCDHB1 (ENSMMUG00000014574) #26	PCDHB2 (ENSMMUG00000061483) #27	PCDHB3 (ENSMMUG00000062270)	PCDHB4 (ENSMMUG00000019523) #30	PCDHB5 (ENSMMUG00000057673) #29	PCDHB6 (ENSMMUG00000062723) #31	ENSMMUG00000029809 #32	PCDHB7 (ENSMMUG00000050553) #33	PCDHB8 (ENSMMUG00000051748)	PCDHB10 (ENSMMUG00000061532) #36	PCDHB13 (ENSMMUG00000049686) #34	ENSMMUG00000053051	PCDHB15 (ENSMMUG00000021941)
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F.c #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000165899	ENSGT00940000168418
Cercopithecinae_d	ANCESTRAL SPECIES	18	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00910000147452	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.bb.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164408	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000165899	ENSGT00940000168418
Sooty mangabey	MODERN SPECIES	309	PFDN1 (ENSCATG00000018995)	HBEGF (ENSCATG00000044743) #7	SLC4A9 (ENSCATG00000022107) #8	ANKHD1 (ENSCATG00000029425) #9	SRA1 (ENSCATG00000044295) #11	APBB3 (ENSCATG00000032944) #12	ENSCATG00000031674 #13	ENSCATG00000034680	CD14 (ENSCATG00000030860) #15	TMCO6 (ENSCATG00000032823) #16	NDUFA2 (ENSCATG00000036702) #17	IK (ENSCATG00000044094) #18	WDR55 (ENSCATG00000034527) #19	DND1 (ENSCATG00000025088) #20	HARS1 (ENSCATG00000036942) #21	HARS2 (ENSCATG00000034017) #22	ZMAT2 (ENSCATG00000032843)	PCDHAC2 (ENSCATG00000039230) #23	PCDHB1 (ENSCATG00000021671) #26	ENSCATG00000020787	ENSCATG00000005931	PCDHB3 (ENSCATG00000004125)	PCDHB4 (ENSCATG00000041627) #30	PCDHB5 (ENSCATG00000021394) #29	ENSCATG00000041883 #32	ENSCATG00000031584	PCDHB14 (ENSCATG00000002956) #37	PCDHGA4 (ENSCATG00000043500)	ENSCATG00000020733	DIAPH1 (ENSCATG00000035236)	HDAC3 (ENSCATG00000017981)
Drill	MODERN SPECIES	1446		PFDN1 (ENSMLEG00000042368)	HBEGF (ENSMLEG00000040667) #7	SLC4A9 (ENSMLEG00000000295) #8	ANKHD1 (ENSMLEG00000029310) #9	SRA1 (ENSMLEG00000036807) #11	APBB3 (ENSMLEG00000017053) #12	ENSMLEG00000042111 #13	CD14 (ENSMLEG00000040468) #15	TMCO6 (ENSMLEG00000043597) #16	NDUFA2 (ENSMLEG00000043870) #17	IK (ENSMLEG00000018434) #18	WDR55 (ENSMLEG00000035918) #19	DND1 (ENSMLEG00000044049) #20	HARS1 (ENSMLEG00000016289) #21	HARS2 (ENSMLEG00000014240) #22	ZMAT2 (ENSMLEG00000041320)	PCDHAC2 (ENSMLEG00000001069) #23	PCDHA5 (ENSMLEG00000023182)	ENSMLEG00000044351	PCDHA10 (ENSMLEG00000044362) #25	PCDHB1 (ENSMLEG00000000950) #26	ENSMLEG00000012923	ENSMLEG00000027337	PCDHB3 (ENSMLEG00000027275)	PCDHB4 (ENSMLEG00000019793) #30	PCDHB5 (ENSMLEG00000031142) #29	PCDHB6 (ENSMLEG00000033049) #31	ENSMLEG00000042263 #32	PCDHB8 (ENSMLEG00000017381)	ENSMLEG00000031089
Olive baboon	MODERN SPECIES	15	ENSPANG00000038370	HBEGF (ENSPANG00000011663) #7	SLC4A9 (ENSPANG00000002472) #8	ANKHD1 (ENSPANG00000000200) #9	SRA1 (ENSPANG00000008615) #11	APBB3 (ENSPANG00000006033) #12	ENSPANG00000031921 #13	SLC35A4 (ENSPANG00000024663) #14	CD14 (ENSPANG00000011929) #15	TMCO6 (ENSPANG00000003022) #16	NDUFA2 (ENSPANG00000035408) #17	IK (ENSPANG00000019171) #18	WDR55 (ENSPANG00000015777) #19	DND1 (ENSPANG00000007892) #20	HARS1 (ENSPANG00000011928) #21	HARS2 (ENSPANG00000011662) #22	ZMAT2 (ENSPANG00000032021)	PCDHAC2 (ENSPANG00000009513) #23	ENSPANG00000050229	ENSPANG00000049344	PCDHB4 (ENSPANG00000045109) #30	PCDHB5 (ENSPANG00000014179) #29	PCDHB6 (ENSPANG00000023782) #31	ENSPANG00000034248 #32	PCDHB7 (ENSPANG00000033865) #33	ENSPANG00000034312	PCDHB14 (ENSPANG00000019433) #37	PCDHB15 (ENSPANG00000003559)	SLC25A2 (ENSPANG00000000311)	TAF7 (ENSPANG00000000647)	PCDHGA2 (ENSPANG00000037083)
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000006029.b	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.ab #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000160554 #23	ENSGT00960000186917	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000165899	ENSGT00940000164093 #35	ENSGT00940000163508.d #36	ENSGT00940000163201.b	ENSGT00940000164011 #34	ENSGT00940000163508.c #36
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000006029.b	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.ab #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000160554 #23	ENSGT00910000147044	ENSGT00960000186917	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000165899	ENSGT00940000164093 #35	ENSGT00940000163508.d #36	ENSGT00940000163201.b	ENSGT00940000164011 #34
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000226306	ENSGT00390000007844 #13	ENSGT00390000006029.b	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.ab #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000160554 #23	ENSGT00910000147044	ENSGT00960000186917	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163469 #33	ENSGT00940000165899	ENSGT00910000147119	ENSGT00940000163508.d #36	ENSGT00940000163201.b	ENSGT00940000164011 #34	ENSGT00940000163362 #37	ENSGT00940000162842
Bolivian squirrel monkey	MODERN SPECIES	103	HBEGF (ENSSBOG00000030515) #7	SLC4A9 (ENSSBOG00000030693) #8	ANKHD1 (ENSSBOG00000027605) #9	SRA1 (ENSSBOG00000011756) #11	APBB3 (ENSSBOG00000024294) #12	ENSSBOG00000033106	ENSSBOG00000029254 #13	ENSSBOG00000032306	CD14 (ENSSBOG00000034070) #15	TMCO6 (ENSSBOG00000029470) #16	NDUFA2 (ENSSBOG00000021588) #17	IK (ENSSBOG00000026357) #18	WDR55 (ENSSBOG00000020822) #19	DND1 (ENSSBOG00000027247) #20	HARS1 (ENSSBOG00000020268) #21	HARS2 (ENSSBOG00000032350) #22	ZMAT2 (ENSSBOG00000025911)
Capuchin	MODERN SPECIES	76								SINHCAF (ENSCCAG00000027218)	ENSCCAG00000033092	ENSCCAG00000031001	DENND5B (ENSCCAG00000021498)	ETFBKMT (ENSCCAG00000032994)	AMN1 (ENSCCAG00000031478)	ENSCCAG00000024724	ENSCCAG00000024963	HARS2 (ENSCCAG00000010689) #22	ZMAT2 (ENSCCAG00000024723)	ENSCCAG00000036365	PCDHAC2 (ENSCCAG00000019689) #23	ENSCCAG00000001295	ENSCCAG00000011151	PCDHB3 (ENSCCAG00000001238)	PCDHB4 (ENSCCAG00000035537) #30	PCDHB5 (ENSCCAG00000034704) #29	ENSCCAG00000036527	PCDHB7 (ENSCCAG00000022977) #33	PCDHB8 (ENSCCAG00000030006)	ENSCCAG00000031338 #37	PCDHGA4 (ENSCCAG00000023813)	DIAPH1 (ENSCCAG00000023411)	ENSCCAG00000019961
Marmoset	MODERN SPECIES	11	SLC4A9 (ENSCJAG00000016762) #8	ANKHD1 (ENSCJAG00000016624) #9	EIF4EBP3 (ENSCJAG00000041408) #10	ENSCJAG00000016613 #11	APBB3 (ENSCJAG00000016553) #12	ENSCJAG00000074508 #13	SLC35A4 (ENSCJAG00000038978) #14	ENSCJAG00000076026	CD14 (ENSCJAG00000052964) #15	TMCO6 (ENSCJAG00000016529) #16	IK (ENSCJAG00000016366) #18	ENSCJAG00000087247	WDR55 (ENSCJAG00000016359) #19	DND1 (ENSCJAG00000016345) #20	HARS1 (ENSCJAG00000016282) #21	HARS2 (ENSCJAG00000016237) #22	ENSCJAG00000016231	ENSCJAG00000075741	PCDHA9 (ENSCJAG00000016159)	ENSCJAG00000072316 #24	ENSCJAG00000077557	ENSCJAG00000043731	PCDHB3 (ENSCJAG00000084247)	PCDHB4 (ENSCJAG00000082856) #30	PCDHB5 (ENSCJAG00000046665) #29	PCDHB6 (ENSCJAG00000039993) #31	ENSCJAG00000080951 #32	PCDHB7 (ENSCJAG00000077866) #33	PCDHB8 (ENSCJAG00000072174)	ENSCJAG00000082423 #35	ENSCJAG00000077002 #35
Mas night monkey	MODERN SPECIES	966	ENSANAG00000035559	ANKHD1 (ENSANAG00000035164) #9	SRA1 (ENSANAG00000020391) #11	APBB3 (ENSANAG00000034312) #12	ENSANAG00000033588 #13	SLC35A4 (ENSANAG00000016426) #14	ENSANAG00000036424	ENSANAG00000034215	CD14 (ENSANAG00000034732) #15	TMCO6 (ENSANAG00000034193) #16	ENSANAG00000036345 #17	IK (ENSANAG00000037081) #18	WDR55 (ENSANAG00000029439) #19	ENSANAG00000037212 #20	HARS1 (ENSANAG00000034093) #21	HARS2 (ENSANAG00000028635) #22	ZMAT2 (ENSANAG00000028921)	ENSANAG00000028755	ENSANAG00000026457	PCDHAC2 (ENSANAG00000033673) #23	ENSANAG00000024712	PCDHB3 (ENSANAG00000029348)	PCDHB4 (ENSANAG00000032867) #30	ENSANAG00000023913 #32	PCDHB7 (ENSANAG00000028196) #33	PCDHB16 (ENSANAG00000029635) #35	ENSANAG00000028914	PCDHB10 (ENSANAG00000037153) #36	PCDHB12 (ENSANAG00000027384)	PCDHB14 (ENSANAG00000028449) #37	PCDHB15 (ENSANAG00000029490)
Tarsier	MODERN SPECIES	7283									CD14 (ENSTSYG00000000598) #15	TMCO6 (ENSTSYG00000034411) #16	NDUFA2 (ENSTSYG00000008340) #17	IK (ENSTSYG00000001304) #18	WDR55 (ENSTSYG00000033042) #19	DND1 (ENSTSYG00000026365) #20	HARS (ENSTSYG00000001804) #21	HARS2 (ENSTSYG00000001833) #22	ZMAT2 (ENSTSYG00000035442)	PCDHA2 (ENSTSYG00000004840)	PCDHA3 (ENSTSYG00000004842)	PCDHA4 (ENSTSYG00000014492)	PCDHA5 (ENSTSYG00000007083)	ENSTSYG00000005760
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000163362 #37	ENSGT01090000260204
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000160554 #23	ENSGT00960000186917	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163362 #37
Mouse lemur	MODERN SPECIES	10	CYSTM1 (ENSMICG00000047794)	PFDN1 (ENSMICG00000043564)	HBEGF (ENSMICG00000047446) #7	SLC4A9 (ENSMICG00000000352) #8	ANKHD1 (ENSMICG00000000358) #9	SRA1 (ENSMICG00000044059) #11	APBB3 (ENSMICG00000000372) #12	ENSMICG00000036280 #13	CD14 (ENSMICG00000037582) #15	TMCO6 (ENSMICG00000014064) #16	NDUFA2 (ENSMICG00000047730) #17	IK (ENSMICG00000014045) #18	WDR55 (ENSMICG00000045324) #19	DND1 (ENSMICG00000029187) #20	HARS1 (ENSMICG00000014087) #21	HARS2 (ENSMICG00000014100) #22	ZMAT2 (ENSMICG00000042843)	PCDHAC2 (ENSMICG00000034226) #23	ENSMICG00000029317	ENSMICG00000046655	PCDHA12 (ENSMICG00000030528) #25	PCDHB3 (ENSMICG00000016131)	PCDHB4 (ENSMICG00000042585) #30	ENSMICG00000039388 #36	PCDHB14 (ENSMICG00000035051) #37	PCDHGA4 (ENSMICG00000011479)	PCDHGA9 (ENSMICG00000047125)	DIAPH1 (ENSMICG00000011482)	HDAC3 (ENSMICG00000017449)	RELL2 (ENSMICG00000017450)	FCHSD1 (ENSMICG00000017451)
Lemuriformes_a	ANCESTRAL SPECIES	13	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00960000186917	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508 #36	ENSGT00940000163201
Coquerels sifaka	MODERN SPECIES	852				ANKHD1 (ENSPCOG00000028558) #9	EIF4EBP3 (ENSPCOG00000014289) #10	SRA1 (ENSPCOG00000010221) #11	APBB3 (ENSPCOG00000015470) #12	ENSPCOG00000027426 #13	CD14 (ENSPCOG00000022838) #15	TMCO6 (ENSPCOG00000014352) #16	ENSPCOG00000028037 #17	IK (ENSPCOG00000017840) #18	WDR55 (ENSPCOG00000022432) #19	DND1 (ENSPCOG00000022204) #20	HARS1 (ENSPCOG00000027592) #21	HARS2 (ENSPCOG00000022041) #22	ZMAT2 (ENSPCOG00000020829)	PCDHA2 (ENSPCOG00000021548)	ENSPCOG00000010236	PCDHA13 (ENSPCOG00000024610)
Greater bamboo lemur	MODERN SPECIES	284	PFDN1 (ENSPSMG00000019270)	HBEGF (ENSPSMG00000019274) #7	SLC4A9 (ENSPSMG00000019289) #8	ANKHD1 (ENSPSMG00000019505) #9	SRA1 (ENSPSMG00000019602) #11	APBB3 (ENSPSMG00000019682) #12	ENSPSMG00000019763 #13	SLC35A4 (ENSPSMG00000019766) #14	CD14 (ENSPSMG00000019788) #15	TMCO6 (ENSPSMG00000019851) #16	NDUFA2 (ENSPSMG00000019873) #17	IK (ENSPSMG00000020005) #18	WDR55 (ENSPSMG00000020043) #19	DND1 (ENSPSMG00000020048) #20	HARS1 (ENSPSMG00000020199) #21	HARS2 (ENSPSMG00000020485) #22	ZMAT2 (ENSPSMG00000020699)	ENSPSMG00000020702 #24	PCDHAC1 (ENSPSMG00000020744)	ENSPSMG00000020749	PCDHB1 (ENSPSMG00000020756) #26	PCDHB2 (ENSPSMG00000020767) #27	PCDHB4 (ENSPSMG00000020775) #30	PCDHB3 (ENSPSMG00000020781)	PCDHB7 (ENSPSMG00000020786) #33	PCDHB13 (ENSPSMG00000020791) #34	PCDHB16 (ENSPSMG00000020800) #35	ENSPSMG00000020816 #36	ENSPSMG00000020822	PCDHB14 (ENSPSMG00000020835) #37	ENSPSMG00000020839
Bushbaby	MODERN SPECIES	118	CYSTM1 (ENSOGAG00000003374)	ENSOGAG00000003376	HBEGF (ENSOGAG00000003377) #7	SLC4A9 (ENSOGAG00000003589) #8	ANKHD1 (ENSOGAG00000014263) #9	SRA1 (ENSOGAG00000025549) #11	APBB3 (ENSOGAG00000014274) #12	SLC35A4 (ENSOGAG00000032808) #14	CD14 (ENSOGAG00000014280) #15	TMCO6 (ENSOGAG00000014285) #16	NDUFA2 (ENSOGAG00000027727) #17	IK (ENSOGAG00000014281) #18	WDR55 (ENSOGAG00000033796) #19	DND1 (ENSOGAG00000033318) #20	HARS1 (ENSOGAG00000002050) #21	HARS2 (ENSOGAG00000002052) #22	ZMAT2 (ENSOGAG00000002054)	PCDHA2 (ENSOGAG00000029087)	ENSOGAG00000031601	ENSOGAG00000024809	PCDHA10 (ENSOGAG00000030636) #25	PCDHA12 (ENSOGAG00000032591) #25	PCDHAC2 (ENSOGAG00000034904) #23	PCDHB1 (ENSOGAG00000005468) #26	PCDHB5 (ENSOGAG00000011372) #29	PCDHB13 (ENSOGAG00000011387) #34	PCDHB14 (ENSOGAG00000011385) #37	ENSOGAG00000011382 #36	PCDHB15 (ENSOGAG00000027699)	ENSOGAG00000011389	PCDHGA1 (ENSOGAG00000011390)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27
Eulipotyphla	ANCESTRAL SPECIES	13						ENSGT00940000153768.b #9	ENSGT00390000000002.a.a.b #12	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00940000153727.b #18	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22
Common shrew	MODERN SPECIES	1015							ANKHD1 (ENSSARG00000007287) #9	APBB3 (ENSSARG00000007360) #12	SLC35A4 (ENSSARG00000007375) #14	CD14 (ENSSARG00000007380) #15	IK (ENSSARG00000007388) #18	ENSSARG00000007399 #16	NDUFA2 (ENSSARG00000007407) #17	DND1 (ENSSARG00000007411) #20	HARS1 (ENSSARG00000007413) #21	HARS2 (ENSSARG00000007427) #22
Hedgehog	MODERN SPECIES	2113													WDR55 (ENSEEUG00000004281) #19	DND1 (ENSEEUG00000004338) #20	HARS1 (ENSEEUG00000004415) #21	HARS2 (ENSEEUG00000004539) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164036 #25	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163312	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000164882	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Suina	ANCESTRAL SPECIES	11	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00900000143298	ENSGT00940000161193	ENSGT01090000260204.a.a.b	ENSGT00940000163362 #37	ENSGT01090000260204.a.b
Pig	MODERN SPECIES	10	SLC4A9 (ENSSSCG00000014363) #8	ANKHD1 (ENSSSCG00000014364) #9	EIF4EBP3 (ENSSSCG00000059551) #10	SRA1 (ENSSSCG00000055768) #11	APBB3 (ENSSSCG00000014366) #12	ENSSSCG00000044155 #13	SLC35A4 (ENSSSCG00000014367) #14	ENSSSCG00000014368	CD14 (ENSSSCG00000014369) #15	TMCO6 (ENSSSCG00000014370) #16	NDUFA2 (ENSSSCG00000014371) #17	IK (ENSSSCG00000014372) #18	WDR55 (ENSSSCG00000032062) #19	DND1 (ENSSSCG00000014374) #20	HARS1 (ENSSSCG00000014375) #21	HARS2 (ENSSSCG00000014376) #22	ZMAT2 (ENSSSCG00000029158)	PCDHAC2 (ENSSSCG00000029281) #23	ENSSSCG00000042156 #24	PCDHA3 (ENSSSCG00000061745)	ENSSSCG00000039859 #24	ENSSSCG00000057570 #24	ENSSSCG00000025603	ENSSSCG00000029442	ENSSSCG00000058260	ENSSSCG00000037515 #24	ENSSSCG00000058366 #24	ENSSSCG00000055269	ENSSSCG00000049531 #24	ENSSSCG00000058913 #24	PCDHA13 (ENSSSCG00000028030)
Chacoan peccary	MODERN SPECIES	913	HBEGF (ENSCWAG00000008556) #7	SLC4A9 (ENSCWAG00000008616) #8	ANKHD1 (ENSCWAG00000009009) #9	EIF4EBP3 (ENSCWAG00000009189) #10	SRA1 (ENSCWAG00000009227) #11	APBB3 (ENSCWAG00000009272) #12	ENSCWAG00000009424 #13	SLC35A4 (ENSCWAG00000009469) #14	CD14 (ENSCWAG00000009491) #15	TMCO6 (ENSCWAG00000009518) #16	NDUFA2 (ENSCWAG00000009579) #17	IK (ENSCWAG00000009630) #18	WDR55 (ENSCWAG00000009743) #19	DND1 (ENSCWAG00000009782) #20	HARS1 (ENSCWAG00000009837) #21	HARS2 (ENSCWAG00000010142) #22	ZMAT2 (ENSCWAG00000010763)	PCDHA1 (ENSCWAG00000010823)	ENSCWAG00000010912	ENSCWAG00000010936	PCDHA5 (ENSCWAG00000010956)	ENSCWAG00000010975	ENSCWAG00000011059	ENSCWAG00000011075	PCDHAC2 (ENSCWAG00000011094) #23	PCDHB1 (ENSCWAG00000011189) #26	ENSCWAG00000011205	ENSCWAG00000011235	PCDHB3 (ENSCWAG00000011256)	ENSCWAG00000011289	PCDHB14 (ENSCWAG00000011309) #37
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00390000008200.f #24	ENSGT00940000163903	ENSGT00390000008200.e.b #24	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00390000008200.f #24	ENSGT00940000163903	ENSGT00390000008200.e.b #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.e.b.b.b #24	ENSGT00940000164747	ENSGT00940000164089	ENSGT00390000008200.e.b.a.b #24	ENSGT00390000008200.e.b.a.a.a.b #24	ENSGT00940000163312	ENSGT00390000008200.e.b.a.a.a.a.b.a #24	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204.a.a.b	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.e.b.b.b #24	ENSGT00940000164747	ENSGT00940000164089	ENSGT00390000008200.e.b.a.b #24	ENSGT00390000008200.e.b.a.a.a.b #24	ENSGT00940000163312	ENSGT00390000008200.e.b.a.a.a.a.b.a #24	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204.a.a.b	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.p #17	ENSGT00390000006178.o #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000164089	ENSGT00390000008200.e.b.a.b #24	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204.a.a.b	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163362 #37	ENSGT00940000163954	ENSGT00940000162842	ENSGT00940000163424	ENSGT00940000160861.c.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000228540	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.p #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712.e	ENSGT00390000008200.e.b.b.b #24	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204.a.a.b	ENSGT00940000164093 #35	ENSGT00940000163362 #37	ENSGT00940000163954	ENSGT00940000162842	ENSGT00940000163424	ENSGT00940000160861.d	ENSGT00940000159725.l	ENSGT00940000164906	ENSGT00940000165041
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT01010000228540	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.p #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712.e	ENSGT00390000008200.e.b.b.b #24	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT01090000260204.a.a.b	ENSGT01090000260204.a.a.a	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163362 #37	ENSGT00940000163424	ENSGT00940000160861.d	ENSGT00940000159725.l	ENSGT00940000164906
Beluga whale	MODERN SPECIES	34	HBEGF (ENSDLEG00000005405) #7	SLC4A9 (ENSDLEG00000005426) #8	ANKHD1 (ENSDLEG00000005662) #9	SRA1 (ENSDLEG00000006306) #11	APBB3 (ENSDLEG00000006320) #12	ENSDLEG00000006390	ENSDLEG00000006408 #13	SLC35A4 (ENSDLEG00000006412) #14	CD14 (ENSDLEG00000006416) #15	TMCO6 (ENSDLEG00000000144) #16	NDUFA2 (ENSDLEG00000000298) #17	IK (ENSDLEG00000000321) #18	WDR55 (ENSDLEG00000000395) #19	DND1 (ENSDLEG00000000417) #20	HARS1 (ENSDLEG00000000481) #21	HARS2 (ENSDLEG00000000760) #22	ENSDLEG00000001019	ENSDLEG00000001043 #24	PCDHA2 (ENSDLEG00000001064)	ENSDLEG00000001135	PCDHA13 (ENSDLEG00000001149)	PCDHAC2 (ENSDLEG00000001163) #23	PCDHB1 (ENSDLEG00000001183) #26	PCDHB15 (ENSDLEG00000001201)	PCDHB14 (ENSDLEG00000001245) #37	ENSDLEG00000001344	PCDHGA2 (ENSDLEG00000001349)	PCDHGA3 (ENSDLEG00000001357)	PCDHGA5 (ENSDLEG00000001366)	PCDHGB3 (ENSDLEG00000001378)	ENSDLEG00000001463
Narwhal	MODERN SPECIES	298	HBEGF (ENSMMNG00015000720) #7	SLC4A9 (ENSMMNG00015000761) #8	ANKHD1 (ENSMMNG00015000921) #9	EIF4EBP3 (ENSMMNG00015001098) #10	SRA1 (ENSMMNG00015001114) #11	APBB3 (ENSMMNG00015001198) #12	ENSMMNG00015001341 #13	SLC35A4 (ENSMMNG00015001351) #14	CD14 (ENSMMNG00015001369) #15	TMCO6 (ENSMMNG00015001390) #16	NDUFA2 (ENSMMNG00015001429) #17	IK (ENSMMNG00015001473) #18	WDR55 (ENSMMNG00015001531) #19	DND1 (ENSMMNG00015001560) #20	HARS1 (ENSMMNG00015001637) #21	HARS2 (ENSMMNG00015001750) #22	ENSMMNG00015001890	ENSMMNG00015001920 #24	PCDHAC2 (ENSMMNG00015001954) #23	ENSMMNG00015001994 #24	PCDHA3 (ENSMMNG00015002008)	ENSMMNG00015002033 #24	ENSMMNG00015002067	ENSMMNG00015002109 #25	ENSMMNG00015002131	ENSMMNG00015002155	ENSMMNG00015002171 #26	ENSMMNG00015002187	ENSMMNG00015002201 #32	ENSMMNG00015002223	ENSMMNG00015002237 #30
Vaquita	MODERN SPECIES	14	HBEGF (ENSPSNG00000011755) #7	ENSPSNG00000011656 #8	ANKHD1 (ENSPSNG00000011482) #9	EIF4EBP3 (ENSPSNG00000011416) #10	SRA1 (ENSPSNG00000011312) #11	APBB3 (ENSPSNG00000010584) #12	ENSPSNG00000010492	ENSPSNG00000010450 #13	CD14 (ENSPSNG00000010424) #15	TMCO6 (ENSPSNG00000010357) #16	NDUFA2 (ENSPSNG00000010299) #17	IK (ENSPSNG00000010172) #18	WDR55 (ENSPSNG00000010108) #19	DND1 (ENSPSNG00000010011) #20	HARS1 (ENSPSNG00000009786) #21	HARS2 (ENSPSNG00000003489) #22	ZMAT2 (ENSPSNG00000003301)	ENSPSNG00000003288 #24	ENSPSNG00000003279 #24	ENSPSNG00000003264 #24	ENSPSNG00000003254 #24	ENSPSNG00000003236 #24	ENSPSNG00000003223 #24	ENSPSNG00000003217 #24	ENSPSNG00000003206 #24	ENSPSNG00000003193	ENSPSNG00000003183 #24	ENSPSNG00000003173 #24	ENSPSNG00000003160 #24	PCDHAC2 (ENSPSNG00000003013) #23	ENSPSNG00000002858
Dolphin	MODERN SPECIES	2291														ENSTTRG00000001755 #20	HARS1 (ENSTTRG00000001760) #21	HARS2 (ENSTTRG00000001771) #22	ZMAT2 (ENSTTRG00000001777)	PCDHA2 (ENSTTRG00000001785)	ENSTTRG00000001812	PCDHA12 (ENSTTRG00000001821) #25
Sperm whale	MODERN SPECIES	19	ENSPCTG00005018819	PFDN1 (ENSPCTG00005018921)	ANKHD1 (ENSPCTG00005018994) #9	EIF4EBP3 (ENSPCTG00005019077) #10	SRA1 (ENSPCTG00005019114) #11	APBB3 (ENSPCTG00005019171) #12	ENSPCTG00005019730 #13	SLC35A4 (ENSPCTG00005019755) #14	CD14 (ENSPCTG00005019771) #15	TMCO6 (ENSPCTG00005019801) #16	NDUFA2 (ENSPCTG00005019842) #17	IK (ENSPCTG00005019904) #18	WDR55 (ENSPCTG00005020077) #19	DND1 (ENSPCTG00005020106) #20	HARS (ENSPCTG00005000404) #21	HARS2 (ENSPCTG00005000529) #22	ZMAT2 (ENSPCTG00005000626)	ENSPCTG00005000663 #24	PCDHAC2 (ENSPCTG00005000764) #23	ENSPCTG00005001040 #24	ENSPCTG00005001057 #24	ENSPCTG00005001067 #24	ENSPCTG00005001078	ENSPCTG00005001093 #24	ENSPCTG00005001101 #24	ENSPCTG00005001111 #24	ENSPCTG00005001119 #24	ENSPCTG00005001131	ENSPCTG00005001137 #24	ENSPCTG00005001145 #24	ENSPCTG00005001151 #24
Blue whale	MODERN SPECIES	14	HBEGF (ENSBMSG00010000125) #7	SLC4A9 (ENSBMSG00010000180) #8	ANKHD1 (ENSBMSG00010000466) #9	EIF4EBP3 (ENSBMSG00010000927) #10	SRA1 (ENSBMSG00010000944) #11	APBB3 (ENSBMSG00010001042) #12	SLC35A4 (ENSBMSG00010001275) #14	ENSBMSG00010001283	CD14 (ENSBMSG00010001298) #15	TMCO6 (ENSBMSG00010001310) #16	NDUFA2 (ENSBMSG00010001334) #17	IK (ENSBMSG00010001362) #18	WDR55 (ENSBMSG00010001394) #19	DND1 (ENSBMSG00010001404) #20	HARS1 (ENSBMSG00010001483) #21	HARS2 (ENSBMSG00010001652) #22	ZMAT2 (ENSBMSG00010001832)	ENSBMSG00010001854	PCDHA2 (ENSBMSG00010001862)	ENSBMSG00010001878 #24	ENSBMSG00010001885 #24	PCDHAC2 (ENSBMSG00010001991) #23	ENSBMSG00010002253 #24	ENSBMSG00010002268 #24	ENSBMSG00010002281 #24	ENSBMSG00010002295 #24	ENSBMSG00010002316 #24	ENSBMSG00010002327 #24	ENSBMSG00010002347 #24	ENSBMSG00010002364 #24	ENSBMSG00010002381 #24
Pecora	ANCESTRAL SPECIES		ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00390000008200.f #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30
Percora_a	ANCESTRAL SPECIES		ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00390000008200.f #24	ENSGT00940000163312	ENSGT00940000164036 #25	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30
Bovidae	ANCESTRAL SPECIES		ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.f.d #24	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163508.f #36	ENSGT00940000163894	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163508.f #36	ENSGT00940000163894	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000163508.e #36
Rambouillet Sheep	MODERN SPECIES	21	HBEGF (ENSOARG00020020934) #7	SLC4A9 (ENSOARG00020020984) #8	ANKHD1 (ENSOARG00020021597) #9	EIF4EBP3 (ENSOARG00020022277) #10	SRA1 (ENSOARG00020022305) #11	APBB3 (ENSOARG00020022354) #12	ENSOARG00020022454 #13	SLC35A4 (ENSOARG00020022487) #14	CD14 (ENSOARG00020022493) #15	TMCO6 (ENSOARG00020022518) #16	NDUFA2 (ENSOARG00020022560) #17	IK (ENSOARG00020022605) #18	WDR55 (ENSOARG00020022644) #19	DND1 (ENSOARG00020022668) #20	HARS (ENSOARG00020022713) #21	HARS2 (ENSOARG00020009907) #22	ZMAT2 (ENSOARG00020013261)	PCDHAC2 (ENSOARG00020013410) #23	ENSOARG00020014803 #24	ENSOARG00020014814 #24	ENSOARG00020014815 #24	ENSOARG00020014829 #24	ENSOARG00020014899 #24	ENSOARG00020014984 #24	ENSOARG00020014990 #24	ENSOARG00020015011 #24	ENSOARG00020015032	PCDHB1 (ENSOARG00020015075) #26	ENSOARG00020015100	PCDHB4 (ENSOARG00020015260) #30	ENSOARG00020015293 #32
Goat	MODERN SPECIES	26	HBEGF (ENSCHIG00000022689) #7	SLC4A9 (ENSCHIG00000015915) #8	ANKHD1 (ENSCHIG00000016020) #9	EIF4EBP3 (ENSCHIG00000026608) #10	SRA1 (ENSCHIG00000013652) #11	APBB3 (ENSCHIG00000019518) #12	ENSCHIG00000025738 #13	SLC35A4 (ENSCHIG00000012468) #14	CD14 (ENSCHIG00000011350) #15	TMCO6 (ENSCHIG00000012882) #16	NDUFA2 (ENSCHIG00000027231) #17	IK (ENSCHIG00000008932) #18	WDR55 (ENSCHIG00000018807) #19	DND1 (ENSCHIG00000026376) #20	HARS1 (ENSCHIG00000018288) #21	HARS2 (ENSCHIG00000009904) #22	ZMAT2 (ENSCHIG00000014775)	PCDHA2 (ENSCHIG00000012794)	PCDHA3 (ENSCHIG00000017022)	PCDHA4 (ENSCHIG00000015750)	ENSCHIG00000017345	ENSCHIG00000026502	PCDHA10 (ENSCHIG00000021311) #25	PCDHA12 (ENSCHIG00000017341) #25	PCDHAC1 (ENSCHIG00000023589)	ENSCHIG00000008421	PCDHAC2 (ENSCHIG00000017560) #23	PCDHB1 (ENSCHIG00000012052) #26	ENSCHIG00000019176	PCDHB4 (ENSCHIG00000001103) #30	PCDHB6 (ENSCHIG00000009935) #31
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.s.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163894	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508.e #36
Bos	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.s.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163894	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000164093 #35	ENSGT00940000163508.e #36
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.s.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00390000008200.f.c.b.a.b.b.a #24	ENSGT00940000164089	ENSGT00390000008200.f.c.b.a.b.b.b #24	ENSGT00940000163846	ENSGT00390000008200.f.c.b.a.b.a #24	ENSGT00940000163903	ENSGT00390000008200.f.c.a #24	ENSGT00390000008200.f.c.b.a.a.a.a.b.a #24	ENSGT00390000008200.f.c.b.a.a.a.a.a.b #24	ENSGT00390000008200.f.c.b.b #24	ENSGT00390000008200.f.c.b.a.a.a.a.a.a.a.a #24	ENSGT00390000008200.f.c.b.a.a.a.b #24	ENSGT00940000165479
Hybrid Bos Indicus	MODERN SPECIES	26	HBEGF (ENSBIXG00005014069) #7	SLC4A9 (ENSBIXG00005001917) #8	ANKHD1 (ENSBIXG00005014460) #9	EIF4EBP3 (ENSBIXG00005006372) #10	SRA1 (ENSBIXG00005005637) #11	APBB3 (ENSBIXG00005014588) #12	ENSBIXG00005014645 #13	SLC35A4 (ENSBIXG00005014618) #14	CD14 (ENSBIXG00005014665) #15	TMCO6 (ENSBIXG00005014688) #16	ENSBIXG00005014710 #17	IK (ENSBIXG00005014746) #18	WDR55 (ENSBIXG00005006373) #19	DND1 (ENSBIXG00005006374) #20	HARS1 (ENSBIXG00005014863) #21	HARS2 (ENSBIXG00005002218) #22	ZMAT2 (ENSBIXG00005005412)	ENSBIXG00005015157 #24	ENSBIXG00005015178 #24	ENSBIXG00005015187 #24	ENSBIXG00005015191 #24	ENSBIXG00005015198 #24	ENSBIXG00005015208 #24	ENSBIXG00005015217 #24	ENSBIXG00005015235 #24	ENSBIXG00005002235 #24	ENSBIXG00005015244	ENSBIXG00005015254	PCDHAC2 (ENSBIXG00005006748) #23	PCDHB1 (ENSBIXG00005007143) #26	ENSBIXG00005015637
Cow	MODERN SPECIES	26	HBEGF (ENSBTAG00000021766) #7	SLC4A9 (ENSBTAG00000021775) #8	ENSBTAG00000054857 #9	ENSBTAG00000010871 #9	EIF4EBP3 (ENSBTAG00000052310) #10	SRA1 (ENSBTAG00000001449) #11	APBB3 (ENSBTAG00000001450) #12	SLC35A4 (ENSBTAG00000030584) #13	CD14 (ENSBTAG00000015032) #15	TMCO6 (ENSBTAG00000030589) #16	NDUFA2 (ENSBTAG00000015041) #17	IK (ENSBTAG00000015034) #18	WDR55 (ENSBTAG00000015042) #19	DND1 (ENSBTAG00000018845) #20	HARS1 (ENSBTAG00000018847) #21	HARS2 (ENSBTAG00000025212) #22	ZMAT2 (ENSBTAG00000005441)	PCDHA2 (ENSBTAG00000046190)	ENSBTAG00000049097 #24	PCDHA3 (ENSBTAG00000046717)	ENSBTAG00000052107 #24	PCDHA4 (ENSBTAG00000049152)	ENSBTAG00000049759 #24	ENSBTAG00000015439	ENSBTAG00000049214 #24	ENSBTAG00000054587 #24	ENSBTAG00000054506 #24	ENSBTAG00000052605 #24	ENSBTAG00000048510 #24	ENSBTAG00000051344 #24	PCDHA13 (ENSBTAG00000030227)
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.s.a #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.f.c.b.a.b.b.a #24	ENSGT00390000008200.f.c.b.a.b.b.b #24	ENSGT00940000164408	ENSGT00390000008200.f.c.b.a.a.a.a.b.b #24	ENSGT00940000163312	ENSGT00390000008200.f.c.b.a.a.a.a.a.a.a.b #24	ENSGT00390000008200.f.c.b.a.a.a.a.a.a.a.a #24	ENSGT00390000008200.f.c.b.a.a.a.b #24	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30
Wild yak	MODERN SPECIES	1158	PFDN1 (ENSBMUG00000014909)	HBEGF (ENSBMUG00000014920) #7	SLC4A9 (ENSBMUG00000015014) #8	ANKHD1 (ENSBMUG00000015158) #9	SRA1 (ENSBMUG00000015205) #11	EIF4EBP3 (ENSBMUG00000015216) #10	APBB3 (ENSBMUG00000015272) #12	ENSBMUG00000015392 #13	SLC35A4 (ENSBMUG00000015411) #14	CD14 (ENSBMUG00000015420) #15	TMCO6 (ENSBMUG00000015453) #16	ENSBMUG00000015491 #17	IK (ENSBMUG00000015543) #18	WDR55 (ENSBMUG00000015570) #19	HARS1 (ENSBMUG00000015699) #21	HARS2 (ENSBMUG00000016134) #22	ZMAT2 (ENSBMUG00000016262)	PCDHAC2 (ENSBMUG00000016446) #23	ENSBMUG00000016539 #24	PCDHA5 (ENSBMUG00000016547)	ENSBMUG00000016572 #24	ENSBMUG00000016584	ENSBMUG00000016605 #24	ENSBMUG00000016621 #24	ENSBMUG00000016635	PCDHB1 (ENSBMUG00000016651) #26	ENSBMUG00000016666	ENSBMUG00000016680	PCDHB6 (ENSBMUG00000016695) #31	ENSBMUG00000016707 #32	ENSBMUG00000016718
Domestic yak	MODERN SPECIES	27	HBEGF (ENSBGRG00000014467) #7	SLC4A9 (ENSBGRG00000014553) #8	ANKHD1 (ENSBGRG00000015693) #9	EIF4EBP3 (ENSBGRG00000016704) #10	SRA1 (ENSBGRG00000016751) #11	APBB3 (ENSBGRG00000016849) #12	ENSBGRG00000017965 #13	SLC35A4 (ENSBGRG00000018014) #14	CD14 (ENSBGRG00000018040) #15	TMCO6 (ENSBGRG00000018091) #16	ENSBGRG00000018292 #17	IK (ENSBGRG00000018393) #18	WDR55 (ENSBGRG00000018638) #19	DND1 (ENSBGRG00000018749) #20	HARS1 (ENSBGRG00000018843) #21	HARS2 (ENSBGRG00000020191) #22	ZMAT2 (ENSBGRG00000021297)	PCDHAC2 (ENSBGRG00000021397) #23	ENSBGRG00000022009 #24	ENSBGRG00000022033 #24	ENSBGRG00000022041 #24	ENSBGRG00000022074 #24	PCDHA10 (ENSBGRG00000022089) #25	ENSBGRG00000022125 #24	ENSBGRG00000022162	ENSBGRG00000022532 #24	ENSBGRG00000022544 #24	ENSBGRG00000022564 #24	ENSBGRG00000022576 #24	ENSBGRG00000022590 #24	ENSBGRG00000022604 #24
American bison	MODERN SPECIES	3206	HBEGF (ENSBBBG00000008497) #7	SLC4A9 (ENSBBBG00000002354) #8	ANKHD1 (ENSBBBG00000012344) #9	EIF4EBP3 (ENSBBBG00000002315) #10	SRA1 (ENSBBBG00000012282) #11	APBB3 (ENSBBBG00000012269) #12	ENSBBBG00000012186 #13	SLC35A4 (ENSBBBG00000002292) #14	CD14 (ENSBBBG00000012180) #15	TMCO6 (ENSBBBG00000012174) #16	ENSBBBG00000012154 #17	IK (ENSBBBG00000012141) #18	WDR55 (ENSBBBG00000012117) #19	DND1 (ENSBBBG00000012101) #20	HARS1 (ENSBBBG00000012076) #21	HARS2 (ENSBBBG00000011918) #22	ZMAT2 (ENSBBBG00000011678)	ENSBBBG00000011668 #24	PCDHA2 (ENSBBBG00000011662)	PCDHAC2 (ENSBBBG00000011644) #23	PCDHA4 (ENSBBBG00000011524)	PCDHA5 (ENSBBBG00000011520)	ENSBBBG00000002112 #24	ENSBBBG00000006835	ENSBBBG00000011295 #24	ENSBBBG00000011293 #24	ENSBBBG00000011287	PCDHB1 (ENSBBBG00000011281) #26	ENSBBBG00000002052	ENSBBBG00000011267	PCDHB4 (ENSBBBG00000011262) #30
Siberian musk deer	MODERN SPECIES	49	HBEGF (ENSMMSG00000002315) #7	SLC4A9 (ENSMMSG00000002111) #8	ANKHD1 (ENSMMSG00000001892) #9	ENSMMSG00000001739 #11	APBB3 (ENSMMSG00000001709) #12	ENSMMSG00000001686 #13	SLC35A4 (ENSMMSG00000001680) #14	ENSMMSG00000001668	CD14 (ENSMMSG00000001661) #15	TMCO6 (ENSMMSG00000001639) #16	NDUFA2 (ENSMMSG00000001623) #17	ENSMMSG00000001604 #18	WDR55 (ENSMMSG00000001588) #19	DND1 (ENSMMSG00000001574) #20	HARS1 (ENSMMSG00000001462) #21	HARS2 (ENSMMSG00000000917) #22	ZMAT2 (ENSMMSG00000000811)	ENSMMSG00000000785	ENSMMSG00000000768	ENSMMSG00000000746 #24	PCDHA3 (ENSMMSG00000000343)	PCDHA5 (ENSMMSG00000000282)	ENSMMSG00000000255	PCDHA11 (ENSMMSG00000000153)	ENSMMSG00000000097 #25	PCDHA13 (ENSMMSG00000000070)	ENSMMSG00000004386	PCDHAC2 (ENSMMSG00000004361) #23	ENSMMSG00000004342	PCDHB1 (ENSMMSG00000004332) #26	ENSMMSG00000004318
Yarkand deer	MODERN SPECIES	32	ANKHD1 (ENSCHYG00000018958) #9	EIF4EBP3 (ENSCHYG00000020000) #10	SRA1 (ENSCHYG00000020039) #11	APBB3 (ENSCHYG00000020143) #12	ENSCHYG00000021290 #13	SLC35A4 (ENSCHYG00000021327) #14	ENSCHYG00000021346	CD14 (ENSCHYG00000021456) #15	ENSCHYG00000021478	TMCO6 (ENSCHYG00000021515) #16	ENSCHYG00000021747 #17	ENSCHYG00000021836 #18	WDR55 (ENSCHYG00000021976) #19	DND1 (ENSCHYG00000022050) #20	HARS1 (ENSCHYG00000022140) #21	HARS2 (ENSCHYG00000023232) #22	ZMAT2 (ENSCHYG00000023849)	ENSCHYG00000023915	PCDHAC2 (ENSCHYG00000023934) #23	PCDHB1 (ENSCHYG00000023997) #26	ENSCHYG00000024053	ENSCHYG00000024110	ENSCHYG00000024141	PCDHGC5 (ENSCHYG00000024191)	ENSCHYG00000024579	DIAPH1 (ENSCHYG00000024635)	HDAC3 (ENSCHYG00000025260)	RELL2 (ENSCHYG00000025303)	FCHSD1 (ENSCHYG00000000556)	ARAP3 (ENSCHYG00000000730)	PCDH1 (ENSCHYG00000000987)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.e.b #24	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT00940000163201	ENSGT00940000163362 #37
Alpaca	MODERN SPECIES	3613																ENSVPAG00000011771 #22
Arabian camel	MODERN SPECIES	22	HBEGF (ENSCDRG00005020281) #7	SLC4A9 (ENSCDRG00005019967) #8	ANKHD1 (ENSCDRG00005019648) #9	EIF4EBP3 (ENSCDRG00005019628) #10	SRA1 (ENSCDRG00005019623) #11	APBB3 (ENSCDRG00005019186) #12	ENSCDRG00005019151 #13	SLC35A4 (ENSCDRG00005019143) #14	CD14 (ENSCDRG00005019128) #15	TMCO6 (ENSCDRG00005019066) #16	NDUFA2 (ENSCDRG00005019021) #17	IK (ENSCDRG00005018927) #18	WDR55 (ENSCDRG00005018882) #19	DND1 (ENSCDRG00005018824) #20	HARS1 (ENSCDRG00005016848) #21	HARS2 (ENSCDRG00005013829) #22	ZMAT2 (ENSCDRG00005013705)	ENSCDRG00005013684 #24	ENSCDRG00005013671 #24	ENSCDRG00005013574 #24	ENSCDRG00005013462 #24	ENSCDRG00005013457 #24	ENSCDRG00005013437	ENSCDRG00005013418 #24	ENSCDRG00005013400 #24	PCDHA11 (ENSCDRG00005013224)	ENSCDRG00005013203 #24	PCDHAC2 (ENSCDRG00005012672) #23	PCDHB1 (ENSCDRG00005012631) #26	ENSCDRG00005012540	ENSCDRG00005012523
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00940000163846	ENSGT00940000164408	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193
Caniformia	ANCESTRAL SPECIES	5	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193	ENSGT01090000260204.a.a.b	ENSGT00940000161185 #30
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193	ENSGT01090000260204.a.a.b	ENSGT00940000161185 #30
Ursidae	ANCESTRAL SPECIES	16	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31
Ursus	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164089	ENSGT00390000008200.g #24	ENSGT00940000163312	ENSGT00390000008200.h #24	ENSGT00940000165479	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00940000163333 #27	ENSGT00900000143298	ENSGT00940000161185 #30	ENSGT00940000157793 #29
American black bear	MODERN SPECIES	2769												ENSUAMG00000004667 #18	WDR55 (ENSUAMG00000004665) #19	DND1 (ENSUAMG00000004664) #20	HARS1 (ENSUAMG00000004661) #21	HARS2 (ENSUAMG00000004656) #22	ZMAT2 (ENSUAMG00000004654)	ENSUAMG00000004652 #24	PCDHA1 (ENSUAMG00000004649)	ENSUAMG00000004645 #24	PCDHA3 (ENSUAMG00000004642)	ENSUAMG00000004640 #24	ENSUAMG00000004638
Polar bear	MODERN SPECIES	173	PFDN1 (ENSUMAG00000015373)	HBEGF (ENSUMAG00000015364) #7	SLC4A9 (ENSUMAG00000015246) #8	ANKHD1 (ENSUMAG00000013419) #9	EIF4EBP3 (ENSUMAG00000013279) #10	SRA1 (ENSUMAG00000013276) #11	APBB3 (ENSUMAG00000013269) #12	ENSUMAG00000013262 #13	SLC35A4 (ENSUMAG00000013259) #14	CD14 (ENSUMAG00000013241) #15	TMCO6 (ENSUMAG00000013237) #16	NDUFA2 (ENSUMAG00000013234) #17	IK (ENSUMAG00000013228) #18	WDR55 (ENSUMAG00000013223) #19	HARS1 (ENSUMAG00000012884) #21	HARS2 (ENSUMAG00000012858) #22	ZMAT2 (ENSUMAG00000012852)	PCDHA1 (ENSUMAG00000012850)	ENSUMAG00000012845 #24	PCDHA4 (ENSUMAG00000012842)	ENSUMAG00000012839 #24	PCDHA5 (ENSUMAG00000012836)	ENSUMAG00000012834 #24	ENSUMAG00000012832	ENSUMAG00000012831 #24	ENSUMAG00000012827 #24	ENSUMAG00000012825	ENSUMAG00000012823 #24	PCDHA11 (ENSUMAG00000012820)	ENSUMAG00000012818 #24	ENSUMAG00000012815 #24
Giant Panda	MODERN SPECIES	13	HBEGF (ENSAMEG00000029706) #7	SLC4A9 (ENSAMEG00000011090) #8	ANKHD1 (ENSAMEG00000011018) #9	EIF4EBP3 (ENSAMEG00000029144) #10	SRA1 (ENSAMEG00000011005) #11	APBB3 (ENSAMEG00000010977) #12	ENSAMEG00000010975 #13	SLC35A4 (ENSAMEG00000020139) #14	CD14 (ENSAMEG00000030576) #15	TMCO6 (ENSAMEG00000010956) #16	NDUFA2 (ENSAMEG00000010954) #17	IK (ENSAMEG00000010888) #18	WDR55 (ENSAMEG00000029034) #19	DND1 (ENSAMEG00000010881) #20	HARS1 (ENSAMEG00000010837) #21	HARS2 (ENSAMEG00000010779) #22	ZMAT2 (ENSAMEG00000010766)	ENSAMEG00000027470	ENSAMEG00000026474	ENSAMEG00000010731 #23	ENSAMEG00000028363 #24	ENSAMEG00000029022 #24	ENSAMEG00000023874 #24	ENSAMEG00000026580 #24	ENSAMEG00000025377 #24	ENSAMEG00000020138 #26	ENSAMEG00000030521	ENSAMEG00000024643	ENSAMEG00000028128	ENSAMEG00000028223	PCDHB5 (ENSAMEG00000025553) #29
Mustelinae	ANCESTRAL SPECIES	17	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164089	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT01090000260204.a.a.b	ENSGT00940000161185 #30	ENSGT00940000163433 #31	ENSGT01030000235990	ENSGT00940000163201	ENSGT01090000260204.a.b	ENSGT00940000163424
American mink	MODERN SPECIES	21	HBEGF (ENSNVIG00000014005) #7	SLC4A9 (ENSNVIG00000013887) #8	ENSNVIG00000013878	ANKHD1 (ENSNVIG00000013724) #9	EIF4EBP3 (ENSNVIG00000013703) #10	APBB3 (ENSNVIG00000013558) #12	ENSNVIG00000013548 #13	SLC35A4 (ENSNVIG00000013539) #14	CD14 (ENSNVIG00000013525) #15	TMCO6 (ENSNVIG00000013502) #16	NDUFA2 (ENSNVIG00000013487) #17	IK (ENSNVIG00000013473) #18	WDR55 (ENSNVIG00000013456) #19	DND1 (ENSNVIG00000013444) #20	ENSNVIG00000013180 #21	HARS2 (ENSNVIG00000012976) #22	ZMAT2 (ENSNVIG00000012962)	ENSNVIG00000012952	PCDHAC2 (ENSNVIG00000012864) #23	PCDHB1 (ENSNVIG00000012848) #26	ENSNVIG00000012846	ENSNVIG00000012843	ENSNVIG00000012842	ENSNVIG00000012839	PCDHB4 (ENSNVIG00000012826) #30	PCDHB6 (ENSNVIG00000012823) #31	ENSNVIG00000012808 #27	ENSNVIG00000012805	ENSNVIG00000012769	ENSNVIG00000012762	ENSNVIG00000012759
Ferret	MODERN SPECIES	175	PURA (ENSMPUG00000008996)	ENSMPUG00000008993	ENSMPUG00000008982	HBEGF (ENSMPUG00000008972) #7	SLC4A9 (ENSMPUG00000008604) #8	ENSMPUG00000008565	ANKHD1 (ENSMPUG00000008542) #9	SRA1 (ENSMPUG00000008493) #11	APBB3 (ENSMPUG00000008482) #12	SLC35A4 (ENSMPUG00000019783) #14	ENSMPUG00000008463	CD14 (ENSMPUG00000008459) #15	TMCO6 (ENSMPUG00000008448) #16	WDR55 (ENSMPUG00000008443) #19	HARS1 (ENSMPUG00000008434) #21	HARS2 (ENSMPUG00000008422) #22	ZMAT2 (ENSMPUG00000008383)	PCDHA3 (ENSMPUG00000008368)	PCDHAC2 (ENSMPUG00000008358) #23	ENSMPUG00000008352	PCDHB1 (ENSMPUG00000008344) #26	ENSMPUG00000008341 #37	SLC25A2 (ENSMPUG00000008334)	TAF7 (ENSMPUG00000020047)	ENSMPUG00000020046	PCDHGA4 (ENSMPUG00000008329)	ENSMPUG00000008327	PCDHGA7 (ENSMPUG00000008323)	ENSMPUG00000008317	DIAPH1 (ENSMPUG00000008293)	HDAC3 (ENSMPUG00000008187)
Canidae	ANCESTRAL SPECIES	29	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844.d.a.a #13	ENSGT00390000007844.c #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.u #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a.i #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000163312	ENSGT00940000164882	ENSGT00940000164089	ENSGT00390000008200 #24	ENSGT00940000163903	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00960000186917	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000163362 #37
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844.c #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178.u #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a.i.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000153339.b.k.b	ENSGT00940000164408	ENSGT00390000008200.k #24	ENSGT00940000165185	ENSGT00940000164089	ENSGT00390000008200.l #24	ENSGT00940000163312	ENSGT00940000165479	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161185 #30	ENSGT00940000157793 #29
Dog	MODERN SPECIES	11	HBEGF (ENSCAFG00845001249) #7	SLC4A9 (ENSCAFG00845001336) #8	ENSCAFG00845001482	ANKHD1 (ENSCAFG00845001622) #9	EIF4EBP3 (ENSCAFG00845001691) #10	APBB3 (ENSCAFG00845001716) #11	APBB3 (ENSCAFG00845001840) #12	SLC35A4 (ENSCAFG00845001883) #14	CD14 (ENSCAFG00845001909) #15	TMCO6 (ENSCAFG00845001948) #16	NDUFA2 (ENSCAFG00845001992) #17	IK (ENSCAFG00845002021) #18	WDR55 (ENSCAFG00845002039) #19	DND1 (ENSCAFG00845002066) #20	HARS1 (ENSCAFG00845002179) #21	HARS2 (ENSCAFG00845002374) #22	ZMAT2 (ENSCAFG00845002442)	ENSCAFG00845002466	ENSCAFG00845002576 #23	ENSCAFG00845002679	ENSCAFG00845002698 #24	ENSCAFG00845002711	ENSCAFG00845002727 #24	ENSCAFG00845002743	PCDHB1 (ENSCAFG00845002830) #26	ENSCAFG00845002853	ENSCAFG00845002878	PCDHB4 (ENSCAFG00845002896) #30	PCDHB5 (ENSCAFG00845002912) #29	PCDHB6 (ENSCAFG00845002945) #31	PCDHB7 (ENSCAFG00845002964) #33
Dingo	MODERN SPECIES	98	SLC4A9 (ENSCAFG00020002964) #8	ANKHD1 (ENSCAFG00020002077) #9	EIF4EBP3 (ENSCAFG00020001947) #10	SRA1 (ENSCAFG00020001924) #11	APBB3 (ENSCAFG00020001619) #12	ENSCAFG00020001529 #13	SLC35A4 (ENSCAFG00020001522) #14	CD14 (ENSCAFG00020001518) #15	TMCO6 (ENSCAFG00020001449) #16	ENSCAFG00020001429 #17	ENSCAFG00020001260	ENSCAFG00020001105 #18	WDR55 (ENSCAFG00020001074) #19	DND1 (ENSCAFG00020001055) #20	ENSCAFG00020000925 #21	HARS2 (ENSCAFG00020000485) #22	ZMAT2 (ENSCAFG00020000423)	ENSCAFG00020000400	ENSCAFG00020000385 #24	PCDHA1 (ENSCAFG00020000370)	ENSCAFG00020000366 #24	PCDHA3 (ENSCAFG00020000363)	ENSCAFG00020000356 #24	PCDHA4 (ENSCAFG00020000345)	ENSCAFG00020000341 #24	ENSCAFG00020000334 #24	ENSCAFG00020000320	ENSCAFG00020000315 #24	ENSCAFG00020000307	ENSCAFG00020000303 #24	ENSCAFG00020000298 #24
Red fox	MODERN SPECIES	4	HBEGF (ENSVVUG00000010124) #7	SLC4A9 (ENSVVUG00000010143) #8	ENSVVUG00000010398	ANKHD1 (ENSVVUG00000010478) #9	EIF4EBP3 (ENSVVUG00000012362) #10	SRA1 (ENSVVUG00000012374) #11	APBB3 (ENSVVUG00000012406) #12	ENSVVUG00000012942 #13	SLC35A4 (ENSVVUG00000012944) #14	CD14 (ENSVVUG00000012947) #15	TMCO6 (ENSVVUG00000012955) #16	NDUFA2 (ENSVVUG00000012989) #17	ENSVVUG00000013006 #19	DND1 (ENSVVUG00000013559) #20	HARS (ENSVVUG00000013620) #21	HARS2 (ENSVVUG00000015439) #22	ZMAT2 (ENSVVUG00000017308)	ENSVVUG00000017313	PCDHA4 (ENSVVUG00000017316)	ENSVVUG00000017320	ENSVVUG00000017323	PCDHA11 (ENSVVUG00000017333)	PCDHAC2 (ENSVVUG00000017368) #23	PCDHB1 (ENSVVUG00000017374) #26	ENSVVUG00000017376	ENSVVUG00000017380	PCDHB5 (ENSVVUG00000017382) #29	PCDHB6 (ENSVVUG00000017403) #31	PCDHB7 (ENSVVUG00000017405) #33	PCDHB14 (ENSVVUG00000017410) #37	ENSVVUG00000017412
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.n #24	ENSGT00940000163312	ENSGT00390000008200.m.a.b.a.a #24	ENSGT00390000008200.m.a.a #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193	ENSGT01090000260204.a.a.b	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.n #24	ENSGT00940000163312	ENSGT00390000008200.m.a.b.a.a #24	ENSGT00390000008200.m.a.a #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00960000186917	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225.e #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.n #24	ENSGT00940000163312	ENSGT00390000008200.m.a.b.a.a #24	ENSGT00390000008200.m.a.a #24	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00940000163333 #27	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163469 #33
leopard	MODERN SPECIES	98	ENSPPRG00000000371 #9	ENSPPRG00000023407	ENSPPRG00000023568 #9	EIF4EBP3 (ENSPPRG00000023846) #10	SRA1 (ENSPPRG00000023984) #11	APBB3 (ENSPPRG00000024348) #12	ENSPPRG00000013902 #13	SLC35A4 (ENSPPRG00000017469) #14	CD14 (ENSPPRG00000012838) #15	TMCO6 (ENSPPRG00000012430) #16	NDUFA2 (ENSPPRG00000010914) #17	IK (ENSPPRG00000010062) #18	WDR55 (ENSPPRG00000009842) #19	ENSPPRG00000009501 #20	HARS1 (ENSPPRG00000008820) #21	HARS2 (ENSPPRG00000005394) #22	ZMAT2 (ENSPPRG00000004163)	ENSPPRG00000016942 #24	ENSPPRG00000016933 #24	ENSPPRG00000016918 #24	ENSPPRG00000016902 #24	ENSPPRG00000016886 #24	ENSPPRG00000016862 #24	ENSPPRG00000016846 #24	ENSPPRG00000016834 #24	ENSPPRG00000016801 #24	ENSPPRG00000002775	ENSPPRG00000016785 #24	ENSPPRG00000016771 #24	ENSPPRG00000016740 #24	ENSPPRG00000016692 #24
lion	MODERN SPECIES		HBEGF (ENSPLOG00000002301) #7	SLC4A9 (ENSPLOG00000002193) #8	ANKHD1 (ENSPLOG00000001996) #9	EIF4EBP3 (ENSPLOG00000001907) #10	SRA1 (ENSPLOG00000001894) #11	APBB3 (ENSPLOG00000001795) #12	ENSPLOG00000001757 #13	SLC35A4 (ENSPLOG00000001750) #14	CD14 (ENSPLOG00000001718) #15	TMCO6 (ENSPLOG00000001690) #16	NDUFA2 (ENSPLOG00000001666) #17	IK (ENSPLOG00000001628) #18	WDR55 (ENSPLOG00000001601) #19	ENSPLOG00000001584 #20	HARS1 (ENSPLOG00000001403) #21	HARS2 (ENSPLOG00000001136) #22	ZMAT2 (ENSPLOG00000001007)	ENSPLOG00000000996 #24	ENSPLOG00000000984	ENSPLOG00000000976 #24	ENSPLOG00000000969 #24	ENSPLOG00000000963 #24	PCDHAC2 (ENSPLOG00000000879) #23	PCDHB1 (ENSPLOG00000000824) #26	ENSPLOG00000000811	ENSPLOG00000000801	ENSPLOG00000000791	PCDHGC5 (ENSPLOG00000000683)	DIAPH1 (ENSPLOG00000000570)	HDAC3 (ENSPLOG00000000526)	RELL2 (ENSPLOG00000000497)
Tiger	MODERN SPECIES	107	SLC4A9 (ENSPTIG00000020507) #8	ENSPTIG00000007099 #9	ENSPTIG00000009082 #9	EIF4EBP3 (ENSPTIG00000010875) #10	SRA1 (ENSPTIG00000011361) #11	APBB3 (ENSPTIG00000012028) #12	ENSPTIG00000015182 #13	SLC35A4 (ENSPTIG00000004896) #14	CD14 (ENSPTIG00000017126) #15	TMCO6 (ENSPTIG00000017178) #16	NDUFA2 (ENSPTIG00000018315) #17	IK (ENSPTIG00000018863) #18	WDR55 (ENSPTIG00000019838) #19	ENSPTIG00000020069	HARS1 (ENSPTIG00000020494) #21	HARS2 (ENSPTIG00000007146) #22	ZMAT2 (ENSPTIG00000008652)	ENSPTIG00000009491	PCDHA4 (ENSPTIG00000009710)	PCDHA5 (ENSPTIG00000011039)	PCDHAC2 (ENSPTIG00000011988) #23	PCDHB1 (ENSPTIG00000005311) #26	ENSPTIG00000014665	ENSPTIG00000015035	ENSPTIG00000005319	PCDHB5 (ENSPTIG00000005325) #29	PCDHB6 (ENSPTIG00000017864) #31	ENSPTIG00000017999 #32	PCDHB13 (ENSPTIG00000018426) #34	PCDHB16 (ENSPTIG00000005336) #35	ENSPTIG00000018803
Cat	MODERN SPECIES		CYSTM1 (ENSFCAG00000001271)	PFDN1 (ENSFCAG00000001272)	HBEGF (ENSFCAG00000001273) #7	SLC4A9 (ENSFCAG00000001274) #8	ANKHD1 (ENSFCAG00000001275) #9	SRA1 (ENSFCAG00000035180) #11	APBB3 (ENSFCAG00000001276) #12	ENSFCAG00000039181 #13	SLC35A4 (ENSFCAG00000001277) #14	CD14 (ENSFCAG00000001278) #15	TMCO6 (ENSFCAG00000001280) #16	NDUFA2 (ENSFCAG00000001282) #17	IK (ENSFCAG00000001279) #18	WDR55 (ENSFCAG00000031277) #19	HARS1 (ENSFCAG00000001286) #21	HARS2 (ENSFCAG00000001288) #22	ZMAT2 (ENSFCAG00000001289)	PCDHAC2 (ENSFCAG00000003685) #23	ENSFCAG00000042305 #24	ENSFCAG00000041450 #24	ENSFCAG00000042926 #24	ENSFCAG00000043492 #24	ENSFCAG00000040890 #24	ENSFCAG00000042372 #24	ENSFCAG00000037079	ENSFCAG00000045578 #24	ENSFCAG00000040254 #24	ENSFCAG00000041017 #24	PCDHB1 (ENSFCAG00000003687) #26	ENSFCAG00000035393	ENSFCAG00000042151
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000163312	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33
Equus	ANCESTRAL SPECIES	6	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200.p #24	ENSGT00390000008200.o #24	ENSGT00940000163312	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00910000147044	ENSGT00900000143298	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34	ENSGT01090000260204.b	ENSGT00940000163508 #36
Horse	MODERN SPECIES	5	SRA1 (ENSECAG00000048166) #11	APBB3 (ENSECAG00000003436) #12	SLC35A4 (ENSECAG00000004900) #14	ENSECAG00000024241	CD14 (ENSECAG00000056386) #15	ENSECAG00000039506 #16	ENSECAG00000033774 #17	ENSECAG00000038120 #18	CD14 (ENSECAG00000001784) #15	ENSECAG00000031163 #16	NDUFA2 (ENSECAG00000023131) #17	ENSECAG00000012779 #18	WDR55 (ENSECAG00000043759) #19	DND1 (ENSECAG00000059455) #20	HARS1 (ENSECAG00000021986) #21	HARS2 (ENSECAG00000014461) #22	ZMAT2 (ENSECAG00000014412)	ENSECAG00000049057	ENSECAG00000045572 #24	ENSECAG00000013199 #24	ENSECAG00000010377	PCDHB1 (ENSECAG00000001755) #26	PCDHB2 (ENSECAG00000043461) #27	ENSECAG00000037002 #32	PCDHB14 (ENSECAG00000031230) #37	ENSECAG00000029924	PCDHGA7 (ENSECAG00000044783)	ENSECAG00000036637	PCDHGC5 (ENSECAG00000016123)	DIAPH1 (ENSECAG00000020822)	HDAC3 (ENSECAG00000020589)
Donkey	MODERN SPECIES	3	PFDN1 (ENSEASG00005038284)	HBEGF (ENSEASG00005016411) #7	SLC4A9 (ENSEASG00005016424) #8	ANKHD1 (ENSEASG00005016592) #9	EIF4EBP3 (ENSEASG00005029306) #10	SRA1 (ENSEASG00005034530) #11	SLC35A4 (ENSEASG00005032362) #14	APBB3 (ENSEASG00005017487) #12	ENSEASG00005017493	ENSEASG00005026915 #15	TMCO6 (ENSEASG00005017504) #16	NDUFA2 (ENSEASG00005017518) #17	IK (ENSEASG00005017521) #18	WDR55 (ENSEASG00005017529) #19	HARS1 (ENSEASG00005017536) #21	HARS2 (ENSEASG00005017563) #22	ZMAT2 (ENSEASG00005025162)	PCDHAC2 (ENSEASG00005018065) #23	ENSEASG00005031256 #24	ENSEASG00005018081	ENSEASG00005028226 #24	ENSEASG00005030084 #24	PCDHB1 (ENSEASG00005018102) #26	ENSEASG00005018105	ENSEASG00005023945	ENSEASG00005018110	ENSEASG00005018120 #27	PCDHB3 (ENSEASG00005018118)	ENSEASG00005033898 #32	PCDHB7 (ENSEASG00005023533) #33	PCDHB13 (ENSEASG00005034911) #34
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00940000163328 #10	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000165185	ENSGT00940000164747	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00900000143298	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163786 #32	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Greater horseshoe bat	MODERN SPECIES	16	HBEGF (ENSRFEG00010010763) #7	SLC4A9 (ENSRFEG00010010874) #8	ANKHD1 (ENSRFEG00010012041) #9	EIF4EBP3 (ENSRFEG00010012240) #10	APBB3 (ENSRFEG00010012315) #12	ENSRFEG00010012516 #13	SLC35A4 (ENSRFEG00010012565) #14	ENSRFEG00010012587	CD14 (ENSRFEG00010012734) #15	TMCO6 (ENSRFEG00010012767) #16	NDUFA2 (ENSRFEG00010012820) #17	IK (ENSRFEG00010012945) #18	WDR55 (ENSRFEG00010013236) #19	DND1 (ENSRFEG00010013376) #20	HARS1 (ENSRFEG00010013452) #21	HARS2 (ENSRFEG00010014579) #22	ZMAT2 (ENSRFEG00010015329)	PCDHAC2 (ENSRFEG00010015437) #23	PCDHB1 (ENSRFEG00010016770) #26	ENSRFEG00010016792	ENSRFEG00010016842	PCDHB3 (ENSRFEG00010016855)	PCDHB4 (ENSRFEG00010016878) #30	PCDHB5 (ENSRFEG00010005928) #29	PCDHB6 (ENSRFEG00010005954) #31	ENSRFEG00010005968 #32	PCDHB7 (ENSRFEG00010005990) #33	ENSRFEG00010006014 #34	PCDHB16 (ENSRFEG00010006048) #35	ENSRFEG00010006071 #36	ENSRFEG00010006092
Microbat	MODERN SPECIES	965	ENSMLUG00000023421	PURA (ENSMLUG00000003093)	CYSTM1 (ENSMLUG00000003105)	ENSMLUG00000003106	HBEGF (ENSMLUG00000003107) #7	SLC4A9 (ENSMLUG00000003111) #8	ANKHD1 (ENSMLUG00000003126) #9	SRA1 (ENSMLUG00000022959) #11	APBB3 (ENSMLUG00000003148) #12	SLC35A4 (ENSMLUG00000003168) #14	CD14 (ENSMLUG00000003174) #15	TMCO6 (ENSMLUG00000003184) #16	ENSMLUG00000003177 #19	DND1 (ENSMLUG00000003195) #20	ENSMLUG00000003199 #21	HARS2 (ENSMLUG00000017524) #22	ZMAT2 (ENSMLUG00000017525)	PCDHA1 (ENSMLUG00000013983)	PCDHA2 (ENSMLUG00000013985)	PCDHA10 (ENSMLUG00000016845) #25	PCDHA11 (ENSMLUG00000014001)	PCDHAC1 (ENSMLUG00000030446)	PCDHAC2 (ENSMLUG00000014008) #23	PCDHB1 (ENSMLUG00000014013) #26	PCDHB2 (ENSMLUG00000010031) #27	PCDHB5 (ENSMLUG00000010066) #29	ENSMLUG00000022929 #32	PCDHB13 (ENSMLUG00000000910) #34	PCDHB16 (ENSMLUG00000013737) #35	ENSMLUG00000004593	ENSMLUG00000001794
Megabat	MODERN SPECIES	1164	IGIP (ENSPVAG00000009690)	CYSTM1 (ENSPVAG00000009691)	PFDN1 (ENSPVAG00000009692)	HBEGF (ENSPVAG00000009694) #7	SLC4A9 (ENSPVAG00000009695) #8	ANKHD1 (ENSPVAG00000009697) #9	SRA1 (ENSPVAG00000009698) #11	APBB3 (ENSPVAG00000009699) #12	CD14 (ENSPVAG00000009702) #15	IK (ENSPVAG00000009703) #18	TMCO6 (ENSPVAG00000009705) #16	NDUFA2 (ENSPVAG00000009708) #17	WDR55 (ENSPVAG00000009709) #19	DND1 (ENSPVAG00000009710) #20	HARS1 (ENSPVAG00000009711) #21	HARS2 (ENSPVAG00000009714) #22	ZMAT2 (ENSPVAG00000009717)
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00390000008200 #24	ENSGT00940000164089	ENSGT00940000163312	ENSGT00940000165142	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000161185 #30	ENSGT00940000157793 #29	ENSGT00940000163433 #31	ENSGT00940000163469 #33	ENSGT00940000164011 #34
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000164089	ENSGT00940000163312	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521
Tenrec	MODERN SPECIES	8879										ENSETEG00000005385 #15	IK (ENSETEG00000005388) #18	ENSETEG00000005391 #17	WDR55 (ENSETEG00000005393) #19	DND1 (ENSETEG00000005397) #20	HARS1 (ENSETEG00000005399) #21	HARS2 (ENSETEG00000005403) #22	ENSETEG00000005406	ENSETEG00000005411
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000153727.a #19	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00390000008200 #24	ENSGT00940000164089	ENSGT00940000163312	ENSGT00940000160554 #23	ENSGT00940000162745 #26	ENSGT00940000163333 #27	ENSGT00940000161193	ENSGT00940000162232	ENSGT00940000159910	ENSGT00940000160487	ENSGT00940000160541	ENSGT00510000046732.B	ENSGT00940000158869	ENSGT00940000155521
Elephant	MODERN SPECIES	2	HBEGF (ENSLAFG00000008592) #7	SLC4A9 (ENSLAFG00000001329) #8	ANKHD1 (ENSLAFG00000005337) #9	SRA1 (ENSLAFG00000020802) #11	APBB3 (ENSLAFG00000005134) #12	SLC35A4 (ENSLAFG00000021736) #14	ENSLAFG00000027299	ENSLAFG00000031861 #15	ENSLAFG00000028921 #15	TMCO6 (ENSLAFG00000013487) #16	NDUFA2 (ENSLAFG00000013494) #17	IK (ENSLAFG00000008152) #18	WDR55 (ENSLAFG00000008159) #19	DND1 (ENSLAFG00000008161) #20	HARS1 (ENSLAFG00000008163) #21	HARS2 (ENSLAFG00000018600) #22	ZMAT2 (ENSLAFG00000018601)	ENSLAFG00000021930 #24	PCDHAC2 (ENSLAFG00000014281) #23	PCDHA3 (ENSLAFG00000001880)	ENSLAFG00000014278	PCDHB1 (ENSLAFG00000005554) #26	PCDHB2 (ENSLAFG00000009131) #27	PCDHB3 (ENSLAFG00000008803)	ENSLAFG00000001302	PCDHGC5 (ENSLAFG00000004545)	DIAPH1 (ENSLAFG00000007578)	ENSLAFG00000007960	RELL2 (ENSLAFG00000031336)	FCHSD1 (ENSLAFG00000028321)	ARAP3 (ENSLAFG00000007967)
Hyrax	MODERN SPECIES	5388										IK (ENSPCAG00000001243) #18	TMCO6 (ENSPCAG00000001349) #16	NDUFA2 (ENSPCAG00000001406) #17	WDR55 (ENSPCAG00000001427) #19	DND1 (ENSPCAG00000001453) #20	HARS1 (ENSPCAG00000001474) #21	HARS2 (ENSPCAG00000001548) #22	ZMAT2 (ENSPCAG00000001604)
Xenarthra	ANCESTRAL SPECIES	33	ENSGT00390000009786	ENSGT00940000156901.A #7	ENSGT00940000160970 #8	ENSGT00940000153768.b #9	ENSGT00390000001803 #11	ENSGT00390000000002.a.a.b #12	ENSGT00390000007844 #13	ENSGT00950000182827.F #14	ENSGT00390000009262	ENSGT00390000005689 #15	ENSGT00390000008104 #16	ENSGT00390000006178 #17	ENSGT00940000153727.b #18	ENSGT00940000159225 #20	ENSGT00390000005922.b.d.b.a #21	ENSGT00390000005922.b.d.b.b #22	ENSGT00390000010712	ENSGT00940000164747	ENSGT00390000008200 #24	ENSGT00940000163903
Sloth	MODERN SPECIES	1261													IK (ENSCHOG00000007738) #18	ENSCHOG00000007758	HARS1 (ENSCHOG00000007766) #21	HARS2 (ENSCHOG00000007782) #22	ZMAT2 (ENSCHOG00000007795)
Armadillo	MODERN SPECIES	3726	PFDN1 (ENSDNOG00000033107)	HBEGF (ENSDNOG00000037258) #7	SLC4A9 (ENSDNOG00000014958) #8	ANKHD1 (ENSDNOG00000014116) #9	SRA1 (ENSDNOG00000045277) #11	APBB3 (ENSDNOG00000014174) #12	ENSDNOG00000038827 #13	SLC35A4 (ENSDNOG00000014192) #14	ENSDNOG00000048239	CD14 (ENSDNOG00000039061) #15	TMCO6 (ENSDNOG00000009762) #16	NDUFA2 (ENSDNOG00000009777) #17	ENSDNOG00000009727 #18	DND1 (ENSDNOG00000013017) #20	HARS1 (ENSDNOG00000015147) #21	HARS2 (ENSDNOG00000015148) #22	ZMAT2 (ENSDNOG00000015171)	ENSDNOG00000000875	ENSDNOG00000017296	ENSDNOG00000046249 #24	ENSDNOG00000044114