Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT00900000143497	ENSGT01090000259987.b.b.a.b #24	ENSGT00940000154419.b	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT00940000158398	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT00900000143497	ENSGT01090000259987.b.b.a.b #24	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT00940000158398	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00680000101538
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT00900000143497	ENSGT01090000259987.b.b.a.b #24	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT00940000158398	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00680000101538
Marmotini_b	ANCESTRAL SPECIES	36	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT01090000259987.b.b.a.b #24	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT00940000158398	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263	ENSGT00940000158330	ENSGT00390000012807	ENSGT00940000160658	ENSGT00680000101538	ENSGT00730000110943.C
Squirrel	MODERN SPECIES	325							SEMA5B (ENSSTOG00000010313) #13	PDIA5 (ENSSTOG00000000040) #14	SEC22A (ENSSTOG00000000042) #15	ADCY5 (ENSSTOG00000000043) #16	HACD2 (ENSSTOG00000023651) #17	MYLK (ENSSTOG00000000046) #18	CCDC14 (ENSSTOG00000004201) #19	ENSSTOG00000004225 #20	ENSSTOG00000033153 #21	KALRN (ENSSTOG00000005605) #22	UMPS (ENSSTOG00000005682) #23	ITGB5 (ENSSTOG00000007965) #24	HEG1 (ENSSTOG00000019628) #25	SLC12A8 (ENSSTOG00000028300) #26	ZNF148 (ENSSTOG00000027082) #27
Arctic ground squirrel	MODERN SPECIES	5	DTX3L (ENSUPAG00010020577)	PARP14 (ENSUPAG00010020584)	HSPBAP1 (ENSUPAG00010020596)	SLC49A4 (ENSUPAG00010020601)	SEMA5B (ENSUPAG00010020613) #13	PDIA5 (ENSUPAG00010020647) #14	SEC22A (ENSUPAG00010020661) #15	ADCY5 (ENSUPAG00010020679) #16	HACD2 (ENSUPAG00010020688) #17	ENSUPAG00010020694 #18	ENSUPAG00010020696 #18	ENSUPAG00010020699	ENSUPAG00010020702	CCDC14 (ENSUPAG00010020712) #19	ENSUPAG00010020746 #20	KALRN (ENSUPAG00010020772) #22	ENSUPAG00010021372	UMPS (ENSUPAG00010021377) #23	ITGB5 (ENSUPAG00010021380) #24	ENSUPAG00010021393	ENSUPAG00010021397	HEG1 (ENSUPAG00010021402) #25	SLC12A8 (ENSUPAG00010021430) #26	ZNF148 (ENSUPAG00010021634) #27	ENSUPAG00010021644	ENSUPAG00010021655	OSBPL11 (ENSUPAG00010021663)	ENSUPAG00010021670	LMLN (ENSUPAG00010021673)	ENSUPAG00010021677	IQCG (ENSUPAG00010021682)
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	19	PARP9 (ENSMMMG00000013448)	DTX3L (ENSMMMG00000013433)	PARP14 (ENSMMMG00000013397)	HSPBAP1 (ENSMMMG00000013384)	SLC49A4 (ENSMMMG00000013367)	SEMA5B (ENSMMMG00000013335) #13	PDIA5 (ENSMMMG00000013311) #14	SEC22A (ENSMMMG00000013291) #15	ADCY5 (ENSMMMG00000013268) #16	HACD2 (ENSMMMG00000013260) #17	ENSMMMG00000013256 #18	ENSMMMG00000013234 #18	ENSMMMG00000013225	CCDC14 (ENSMMMG00000013192) #19	ENSMMMG00000013183 #20	ENSMMMG00000013014 #22	ENSMMMG00000012981	ENSMMMG00000012738 #22	UMPS (ENSMMMG00000012713) #23	ENSMMMG00000012704	ITGB5 (ENSMMMG00000012679) #24	ENSMMMG00000012665 #25	SLC12A8 (ENSMMMG00000012328) #26	ZNF148 (ENSMMMG00000012274) #27	ENSMMMG00000012255	SNX4 (ENSMMMG00000012229)	GNG5B (ENSMMMG00000012223)	ENSMMMG00000012176	ENSMMMG00000012158	XXYLT1 (ENSMMMG00000012143)	ACAP2 (ENSMMMG00000011132)
Alpin marmot	MODERN SPECIES	19	PARP14 (ENSMMMG00000013397)	HSPBAP1 (ENSMMMG00000013384)	SLC49A4 (ENSMMMG00000013367)	SEMA5B (ENSMMMG00000013335) #13	PDIA5 (ENSMMMG00000013311) #14	SEC22A (ENSMMMG00000013291) #15	ADCY5 (ENSMMMG00000013268) #16	HACD2 (ENSMMMG00000013260) #17	ENSMMMG00000013256 #18	ENSMMMG00000013234 #18	ENSMMMG00000013225	CCDC14 (ENSMMMG00000013192) #19	ENSMMMG00000013183 #20	ENSMMMG00000013014 #22	ENSMMMG00000012981	ENSMMMG00000012738 #22	UMPS (ENSMMMG00000012713) #23	ENSMMMG00000012704	ITGB5 (ENSMMMG00000012679) #24	ENSMMMG00000012665 #25	SLC12A8 (ENSMMMG00000012328) #26	ZNF148 (ENSMMMG00000012274) #27	ENSMMMG00000012255	SNX4 (ENSMMMG00000012229)	GNG5B (ENSMMMG00000012223)	ENSMMMG00000012176	ENSMMMG00000012158	XXYLT1 (ENSMMMG00000012143)	ACAP2 (ENSMMMG00000011132)	ENSMMMG00000011097	APOD (ENSMMMG00000011088)
Eurasian red squirrel	MODERN SPECIES	1	WDR5B (ENSSVLG00005006686)	KPNA1 (ENSSVLG00005006713)	PARP9 (ENSSVLG00005006786)	DTX3L (ENSSVLG00005006929)	PARP14 (ENSSVLG00005006958)	HSPBAP1 (ENSSVLG00005007004)	SLC49A4 (ENSSVLG00005007048)	SEMA5B (ENSSVLG00005007095) #13	PDIA5 (ENSSVLG00005007242) #14	SEC22A (ENSSVLG00005007307) #15	ADCY5 (ENSSVLG00005007362) #16	ENSSVLG00005007470 #17	MYLK (ENSSVLG00005007634) #18	CCDC14 (ENSSVLG00005008304) #19	ENSSVLG00005008547 #20	KALRN (ENSSVLG00005008718) #22	ENSSVLG00005009580	UMPS (ENSSVLG00005009595) #23	ITGB5 (ENSSVLG00005009637) #24	ENSSVLG00005009672	HEG1 (ENSSVLG00005009706) #25	SLC12A8 (ENSSVLG00005009841) #26	ZNF148 (ENSSVLG00005009954) #27	SNX4 (ENSSVLG00005010065)	ENSSVLG00005010146	OSBPL11 (ENSSVLG00005010177)	LMLN (ENSSVLG00005010315)	ENSSVLG00005010878	IQCG (ENSSVLG00005010949)	LRCH3 (ENSSVLG00005011278)	FYTTD1 (ENSSVLG00005011692)
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT00900000143497	ENSGT01090000259987.b.b.a.b #24	ENSGT00940000154419.b	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157
Hystricomorpha_a	ANCESTRAL SPECIES	36	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT01090000259987.b.b.a.b #24	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b
Hystricomorpha_b	ANCESTRAL SPECIES	32	ENSGT00940000154143.f	ENSGT01050000244950.a.a.a	ENSGT00940000158837	ENSGT00940000154578.A.d	ENSGT00940000154311.a.b	ENSGT00940000159893	ENSGT01030000234625.D	ENSGT00940000156712 #13	ENSGT00940000156797 #14	ENSGT00940000158470 #15	ENSGT00940000158054 #16	ENSGT00530000062962.a.a #17	ENSGT00940000157879 #18	ENSGT00390000017916 #19	ENSGT00390000012731.a.b #20	ENSGT00940000155248 #22	ENSGT00390000001856 #23	ENSGT01090000259987.b.b.a.b #24	ENSGT00710000106813.A #25	ENSGT00940000160130 #26	ENSGT00940000157406 #27	ENSGT00930000151029	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b
Long-tailed chinchilla	MODERN SPECIES	134	WDR5B (ENSCLAG00000017883)	KPNA1 (ENSCLAG00000010516)	PARP9 (ENSCLAG00000009939)	DTX3L (ENSCLAG00000010981)	PARP14 (ENSCLAG00000009862)	HSPBAP1 (ENSCLAG00000010939)	SLC49A4 (ENSCLAG00000012057)	SEMA5B (ENSCLAG00000014814) #13	PDIA5 (ENSCLAG00000015554) #14	SEC22A (ENSCLAG00000013594) #15	ADCY5 (ENSCLAG00000009501) #16	HACD2 (ENSCLAG00000010576) #17	MYLK (ENSCLAG00000011810) #18	CCDC14 (ENSCLAG00000014825) #19	ENSCLAG00000012814 #20	KALRN (ENSCLAG00000009409) #22	UMPS (ENSCLAG00000014945) #23	ITGB5 (ENSCLAG00000012736) #24	ENSCLAG00000010170 #25	ENSCLAG00000009772 #25	SLC12A8 (ENSCLAG00000011051) #26	ZNF148 (ENSCLAG00000011127) #27	SNX4 (ENSCLAG00000015678)	CCR8 (ENSCLAG00000014415)	CX3CR1 (ENSCLAG00000014102)	ENSCLAG00000014747	XIRP1 (ENSCLAG00000017823)	CSRNP1 (ENSCLAG00000010879)	TTC21A (ENSCLAG00000013763)	GORASP1 (ENSCLAG00000010087)	WDR48 (ENSCLAG00000017373)
Degu	MODERN SPECIES	188	PARP14 (ENSODEG00000008430)	HSPBAP1 (ENSODEG00000007295)	SLC49A4 (ENSODEG00000011339)	SEMA5B (ENSODEG00000008076) #13	PDIA5 (ENSODEG00000006957) #14	SEC22A (ENSODEG00000006813) #15	ADCY5 (ENSODEG00000006735) #16	ENSODEG00000008102	ENSODEG00000007320 #17	ENSODEG00000007054	ENSODEG00000019662	MYLK (ENSODEG00000007628) #18	ENSODEG00000007317	CCDC14 (ENSODEG00000007691) #19	ENSODEG00000007511 #20	KALRN (ENSODEG00000006501) #22	ENSODEG00000007279	UMPS (ENSODEG00000008657) #23	ITGB5 (ENSODEG00000008371) #24	ENSODEG00000007015 #25	ENSODEG00000006678	ENSODEG00000019397	SLC12A8 (ENSODEG00000008849) #26	ZNF148 (ENSODEG00000006659) #27	ENSODEG00000006296	ENSODEG00000007249	ENSODEG00000006693	CX3CR1 (ENSODEG00000019304)	CSRNP1 (ENSODEG00000006413)	TTC21A (ENSODEG00000006879)	GORASP1 (ENSODEG00000009484)
Guinea pig	MODERN SPECIES	87	ENSCPOG00000005713	KPNA1 (ENSCPOG00000007925)	PARP9 (ENSCPOG00000022546)	DTX3L (ENSCPOG00000027004)	PARP14 (ENSCPOG00000020020)	HSPBAP1 (ENSCPOG00000000075)	SLC49A4 (ENSCPOG00000008927)	SEMA5B (ENSCPOG00000022428) #13	PDIA5 (ENSCPOG00000009168) #14	SEC22A (ENSCPOG00000009176) #15	ADCY5 (ENSCPOG00000013929) #16	HACD2 (ENSCPOG00000033371) #17	MYLK (ENSCPOG00000004740) #18	CCDC14 (ENSCPOG00000014386) #19	ENSCPOG00000026523 #20	KALRN (ENSCPOG00000012451) #22	UMPS (ENSCPOG00000007985) #23	ITGB5 (ENSCPOG00000009608) #24	HEG1 (ENSCPOG00000037030) #25	SLC12A8 (ENSCPOG00000012476) #26	ZNF148 (ENSCPOG00000008835) #27	ENSCPOG00000038702	SNX4 (ENSCPOG00000009282)	CCR8 (ENSCPOG00000011883)	CX3CR1 (ENSCPOG00000033203)	ENSCPOG00000038030	CSRNP1 (ENSCPOG00000030887)	TTC21A (ENSCPOG00000014079)	GORASP1 (ENSCPOG00000030918)	WDR48 (ENSCPOG00000010820)	SCN11A (ENSCPOG00000030301)
Naked mole-rat female	MODERN SPECIES	11	PARP14 (ENSHGLG00000001930)	HSPBAP1 (ENSHGLG00000001996)	SLC49A4 (ENSHGLG00000002042)	SEMA5B (ENSHGLG00000002109) #13	ENSHGLG00000002278 #14	SEC22A (ENSHGLG00000002346) #15	ADCY5 (ENSHGLG00000002391) #16	ENSHGLG00000050538 #17	MYLK (ENSHGLG00000000906) #18	ENSHGLG00000048936	CCDC14 (ENSHGLG00000001004) #19	ENSHGLG00000001029 #20	ENSHGLG00000046407	ENSHGLG00000012259	ENSHGLG00000020711	KALRN (ENSHGLG00000018826) #22	UMPS (ENSHGLG00000011551) #23	ENSHGLG00000047740	ITGB5 (ENSHGLG00000011184) #24	ENSHGLG00000037460	ENSHGLG00000016690 #25	ZNF148 (ENSHGLG00000011875) #27	ENSHGLG00000014404	ENSHGLG00000017413	ENSHGLG00000047149	ENSHGLG00000019031	ENSHGLG00000021278	CX3CR1 (ENSHGLG00000016099)	XIRP1 (ENSHGLG00000021303)	CSRNP1 (ENSHGLG00000011052)	TTC21A (ENSHGLG00000007505)