Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT01050000244950.a.a.a	ENSGT00940000158837 #7	ENSGT00940000154578.A.d #8	ENSGT00940000163672 #10	ENSGT00940000154311.a.b #11	ENSGT00940000159893 #12	ENSGT01030000234625.D #13	ENSGT00940000156712 #14	ENSGT00940000156797 #15	ENSGT00940000158470 #16	ENSGT00940000158054 #17	ENSGT00530000062962.a.a #18	ENSGT00940000157879 #19	ENSGT00390000017916 #20	ENSGT00390000012731.a.b #21	ENSGT00940000155248 #22	ENSGT00390000001856 #24	ENSGT00900000143497 #25	ENSGT01090000259987.b.b.a.b #26	ENSGT00940000154419.b #27	ENSGT00710000106813.A #28	ENSGT00940000160130 #29	ENSGT00940000157406 #30	ENSGT00930000151029 #31	ENSGT00940000158398 #32	ENSGT00390000008796 #33	ENSGT00390000016972.a.a.a	ENSGT00730000111263 #34	ENSGT00940000158330 #35	ENSGT00390000012807 #36	ENSGT00940000160658 #37
Equus	ANCESTRAL SPECIES	19	ENSGT01050000244950.a.a.a	ENSGT00940000158837 #7	ENSGT00940000154578.A.d #8	ENSGT00940000163672 #10	ENSGT00940000154311.a.b #11	ENSGT00940000159893 #12	ENSGT01030000234625.D #13	ENSGT00940000156712 #14	ENSGT00940000156797 #15	ENSGT00940000158470 #16	ENSGT00940000158054 #17	ENSGT00530000062962.a.a #18	ENSGT00940000157879 #19	ENSGT00390000017916 #20	ENSGT00390000012731.a.b #21	ENSGT00940000155248 #22	ENSGT00390000001856 #24	ENSGT00900000143497 #25	ENSGT01090000259987.b.b.a.b #26	ENSGT00940000154419.b #27	ENSGT00710000106813.A #28	ENSGT00940000160130 #29	ENSGT00940000157406 #30	ENSGT00930000151029 #31	ENSGT00940000158398 #32	ENSGT00390000008796 #33	ENSGT00390000016972.a.a.a	ENSGT00730000111263 #34	ENSGT00940000158330 #35	ENSGT00940000166255	ENSGT00390000012807 #36
Horse	DUPLICATION
Horse	MODERN SPECIES	10	PARP9 (ENSECAG00000012331) #7	DTX3L (ENSECAG00000009686) #8	ENSECAG00000046950 #9	PARP15 (ENSECAG00000008906) #10	PARP14 (ENSECAG00000024988) #11	HSPBAP1 (ENSECAG00000024770) #12	SLC49A4 (ENSECAG00000021542) #13	SEMA5B (ENSECAG00000008520) #14	PDIA5 (ENSECAG00000015276) #15	SEC22A (ENSECAG00000011130) #16	ADCY5 (ENSECAG00000009948) #17	HACD2 (ENSECAG00000053414) #18	MYLK (ENSECAG00000015387) #19	CCDC14 (ENSECAG00000014591) #20	ENSECAG00000012007 #21	KALRN (ENSECAG00000019993) #22	ENSECAG00000049298 #23	UMPS (ENSECAG00000009708) #24	ENSECAG00000049764 #25	ITGB5 (ENSECAG00000007589) #26	ENSECAG00000006569 #27	HEG1 (ENSECAG00000001870) #28	SLC12A8 (ENSECAG00000020175) #29	ZNF148 (ENSECAG00000013557) #30	SNX4 (ENSECAG00000008857) #31	OSBPL11 (ENSECAG00000020840) #32	LMLN (ENSECAG00000012354) #33	IQCG (ENSECAG00000008619) #34	LRCH3 (ENSECAG00000023846) #35	FYTTD1 (ENSECAG00000019051) #36	RUBCN (ENSECAG00000010420) #37
Horse	MODERN SPECIES	10	DTX3L (ENSECAG00000009686) #8	ENSECAG00000046950 #9	PARP15 (ENSECAG00000008906) #10	PARP14 (ENSECAG00000024988) #11	HSPBAP1 (ENSECAG00000024770) #12	SLC49A4 (ENSECAG00000021542) #13	SEMA5B (ENSECAG00000008520) #14	PDIA5 (ENSECAG00000015276) #15	SEC22A (ENSECAG00000011130) #16	ADCY5 (ENSECAG00000009948) #17	HACD2 (ENSECAG00000053414) #18	MYLK (ENSECAG00000015387) #19	CCDC14 (ENSECAG00000014591) #20	ENSECAG00000012007 #21	KALRN (ENSECAG00000019993) #22	ENSECAG00000049298 #23	UMPS (ENSECAG00000009708) #24	ENSECAG00000049764 #25	ITGB5 (ENSECAG00000007589) #26	ENSECAG00000006569 #27	HEG1 (ENSECAG00000001870) #28	SLC12A8 (ENSECAG00000020175) #29	ZNF148 (ENSECAG00000013557) #30	SNX4 (ENSECAG00000008857) #31	OSBPL11 (ENSECAG00000020840) #32	LMLN (ENSECAG00000012354) #33	IQCG (ENSECAG00000008619) #34	LRCH3 (ENSECAG00000023846) #35	FYTTD1 (ENSECAG00000019051) #36	RUBCN (ENSECAG00000010420) #37	MUC20 (ENSECAG00000010018)
Donkey	DUPLICATION
Donkey	MODERN SPECIES	25	DTX3L (ENSEASG00005016541) #8	ENSEASG00005026341	ENSEASG00005032663	PARP15 (ENSEASG00005034894) #10	PARP14 (ENSEASG00005016553) #11	HSPBAP1 (ENSEASG00005016558) #12	SLC49A4 (ENSEASG00005016562) #13	SEMA5B (ENSEASG00005016611) #14	PDIA5 (ENSEASG00005016898) #15	SEC22A (ENSEASG00005016902) #16	ADCY5 (ENSEASG00005016931) #17	HACD2 (ENSEASG00005017124) #18	MYLK (ENSEASG00005017131) #19	CCDC14 (ENSEASG00005007069) #20	ENSEASG00005007063 #21	ENSEASG00005006982 #22	ENSEASG00005000860	ENSEASG00005006896 #22	UMPS (ENSEASG00005006882) #24	ENSEASG00005024271 #25	ITGB5 (ENSEASG00005006879) #26	ENSEASG00005006873 #27	ENSEASG00005006869 #28	SLC12A8 (ENSEASG00005006860) #29	ZNF148 (ENSEASG00005006857) #30	SNX4 (ENSEASG00005006841) #31	ENSEASG00005006834 #32	ENSEASG00005006823 #33	RPL35A (ENSEASG00005006819)	IQCG (ENSEASG00005006818) #34	ENSEASG00005006808
Donkey	MODERN SPECIES	25	ENSEASG00005032663	PARP15 (ENSEASG00005034894) #10	PARP14 (ENSEASG00005016553) #11	HSPBAP1 (ENSEASG00005016558) #12	SLC49A4 (ENSEASG00005016562) #13	SEMA5B (ENSEASG00005016611) #14	PDIA5 (ENSEASG00005016898) #15	SEC22A (ENSEASG00005016902) #16	ADCY5 (ENSEASG00005016931) #17	HACD2 (ENSEASG00005017124) #18	MYLK (ENSEASG00005017131) #19	CCDC14 (ENSEASG00005007069) #20	ENSEASG00005007063 #21	ENSEASG00005006982 #22	ENSEASG00005000860	ENSEASG00005006896 #22	UMPS (ENSEASG00005006882) #24	ENSEASG00005024271 #25	ITGB5 (ENSEASG00005006879) #26	ENSEASG00005006873 #27	ENSEASG00005006869 #28	SLC12A8 (ENSEASG00005006860) #29	ZNF148 (ENSEASG00005006857) #30	SNX4 (ENSEASG00005006841) #31	ENSEASG00005006834 #32	ENSEASG00005006823 #33	RPL35A (ENSEASG00005006819)	IQCG (ENSEASG00005006818) #34	ENSEASG00005006808	ENSEASG00005006793 #36	ENSEASG00005006787 #37
Chiroptera	ANCESTRAL SPECIES	13	ENSGT01050000244950.a.a.a	ENSGT00940000158837 #7	ENSGT00940000154578.A.d #8	ENSGT00940000163672 #10	ENSGT00940000154311.a.b #11	ENSGT00940000159893 #12	ENSGT01030000234625.D #13	ENSGT00940000156712 #14	ENSGT00940000156797 #15	ENSGT00940000158470 #16	ENSGT00940000158054 #17	ENSGT00530000062962.a.a #18	ENSGT00940000157879 #19	ENSGT00390000017916 #20	ENSGT00390000012731.a.b #21	ENSGT00940000155248 #22	ENSGT00390000001856 #24	ENSGT01090000259987.b.b.a.b #26	ENSGT00900000143497 #25	ENSGT00940000154419.b #27	ENSGT00710000106813.A #28	ENSGT00940000160130 #29	ENSGT00940000157406 #30	ENSGT00930000151029 #31	ENSGT00940000158398 #32	ENSGT00390000008796 #33	ENSGT00390000016972.a.a.a	ENSGT00730000111263 #34	ENSGT00940000158330 #35	ENSGT00390000012807 #36	ENSGT00940000160658 #37
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT01050000244950.a.a.a	ENSGT00940000158837 #7	ENSGT00940000154578.A.d #8	ENSGT00940000163672 #10	ENSGT00940000154311.a.b #11	ENSGT00940000159893 #12	ENSGT01030000234625.D #13	ENSGT00940000156712 #14	ENSGT00940000156797 #15	ENSGT00940000158470 #16	ENSGT00940000158054 #17	ENSGT00530000062962.a.a #18	ENSGT00940000157879 #19	ENSGT00390000017916 #20	ENSGT00390000012731.a.b #21	ENSGT00940000155248 #22	ENSGT00390000001856 #24	ENSGT01090000259987.b.b.a.b #26	ENSGT00900000143497 #25	ENSGT00940000154419.b #27	ENSGT00710000106813.A #28	ENSGT00940000160130 #29	ENSGT00940000157406 #30	ENSGT00930000151029 #31	ENSGT00940000158398 #32	ENSGT00390000008796 #33	ENSGT00390000016972.a.a.a	ENSGT00730000111263 #34	ENSGT00940000158330 #35	ENSGT00390000012807 #36	ENSGT00940000160658 #37
Greater horseshoe bat	MODERN SPECIES	11	DTX3L (ENSRFEG00010003606) #8	PARP15 (ENSRFEG00010003726) #10	ENSRFEG00010003770	PARP14 (ENSRFEG00010003792) #11	HSPBAP1 (ENSRFEG00010003847) #12	SLC49A4 (ENSRFEG00010003866) #13	SEMA5B (ENSRFEG00010003898) #14	PDIA5 (ENSRFEG00010003958) #15	SEC22A (ENSRFEG00010003993) #16	ADCY5 (ENSRFEG00010004062) #17	HACD2 (ENSRFEG00010004173) #18	MYLK (ENSRFEG00010010116) #19	CCDC14 (ENSRFEG00010010337) #20	ENSRFEG00010010577	ENSRFEG00010010633 #21	KALRN (ENSRFEG00010010836) #22	UMPS (ENSRFEG00010011171) #24	ITGB5 (ENSRFEG00010011225) #26	ENSRFEG00010011276 #25	ENSRFEG00010011352 #27	HEG1 (ENSRFEG00010011400) #28	SLC12A8 (ENSRFEG00010011701) #29	ENSRFEG00010011777	ZNF148 (ENSRFEG00010011798) #30	SNX4 (ENSRFEG00010011851) #31	OSBPL11 (ENSRFEG00010011920) #32	LMLN (ENSRFEG00010011979) #33	ENSRFEG00010012130	ENSRFEG00010012213 #34	LRCH3 (ENSRFEG00010012261) #35	ENSRFEG00010012486 #36
Microbat	MODERN SPECIES	1042	ENSMLUG00000022755 #11	ENSMLUG00000023256 #11	ENSMLUG00000027718 #11	ENSMLUG00000024845 #11	ENSMLUG00000008081 #12	SLC49A4 (ENSMLUG00000008102) #13	SEMA5B (ENSMLUG00000008130) #14	PDIA5 (ENSMLUG00000008176) #15	SEC22A (ENSMLUG00000008207) #16	ADCY5 (ENSMLUG00000008225) #17	ENSMLUG00000006448	HACD2 (ENSMLUG00000011954) #18	MYLK (ENSMLUG00000011967) #19	CCDC14 (ENSMLUG00000004746) #20	ENSMLUG00000014232 #21	KALRN (ENSMLUG00000002329) #22	UMPS (ENSMLUG00000002366) #24	ITGB5 (ENSMLUG00000002372) #26	ENSMLUG00000001172	HEG1 (ENSMLUG00000001184) #28	SLC12A8 (ENSMLUG00000024105) #29	ZNF148 (ENSMLUG00000007681) #30	SNX4 (ENSMLUG00000026891) #31	OSBPL11 (ENSMLUG00000005512) #32	ENSMLUG00000027927	LMLN (ENSMLUG00000010788) #33	RPL35A (ENSMLUG00000010771)	IQCG (ENSMLUG00000010744) #34	LRCH3 (ENSMLUG00000010702) #35	FYTTD1 (ENSMLUG00000005630) #36	ENSMLUG00000006598 #37
Megabat	MODERN SPECIES	1664																KALRN (ENSPVAG00000000197) #22	UMPS (ENSPVAG00000000213) #24	ITGB5 (ENSPVAG00000000216) #26	ENSPVAG00000000218 #27	HEG1 (ENSPVAG00000000220) #28	SLC12A8 (ENSPVAG00000024154) #29	ZNF148 (ENSPVAG00000006133) #30