Bilateria	ANCESTRAL SPECIES																	ENSGT00940000156166 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000156166 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156166 #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES		ENSGT00950000183110.b.b #8	ENSGT00940000155624 #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000162790.a	ENSGT00940000177865	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Euteleostomi	ANCESTRAL SPECIES	14	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000162790.a	ENSGT00530000063777.a.a.a	ENSGT00940000177865	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660
Sarcopterygii	ANCESTRAL SPECIES	17	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000177865	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000162790.a	ENSGT00940000177865	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33
Amniota	ANCESTRAL SPECIES	9	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000162790.a	ENSGT01090000260395	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660
Mammalia	ANCESTRAL SPECIES	5	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Theria	ANCESTRAL SPECIES	3	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Eutheria	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Primates	ANCESTRAL SPECIES	4	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Lemuriformes	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Lemuriformes_a	ANCESTRAL SPECIES	39	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Greater bamboo lemur	MODERN SPECIES	556	ABCD3 (ENSPSMG00000013980) #7	ARHGAP29 (ENSPSMG00000014189) #8	ABCA4 (ENSPSMG00000014392) #9	GCLM (ENSPSMG00000014490) #10	DNTTIP2 (ENSPSMG00000014510) #11	BCAR3 (ENSPSMG00000014546) #12	FNBP1L (ENSPSMG00000014651) #13	ENSPSMG00000014687 #14	DR1 (ENSPSMG00000014696) #15	CCDC18 (ENSPSMG00000014808) #16	TMED5 (ENSPSMG00000014878) #17	MTF2 (ENSPSMG00000015020) #18	DIPK1A (ENSPSMG00000015215) #19	ENSPSMG00000015298 #20	EVI5 (ENSPSMG00000015410) #21	GFI1 (ENSPSMG00000015439) #22	RPAP2 (ENSPSMG00000015467) #23	GLMN (ENSPSMG00000015491) #24	C1orf146 (ENSPSMG00000015518) #25	BTBD8 (ENSPSMG00000015550) #26	EPHX4 (ENSPSMG00000015559) #27	BRDT (ENSPSMG00000015627) #28	TGFBR3 (ENSPSMG00000015750) #29	CDC7 (ENSPSMG00000015799) #30	HFM1 (ENSPSMG00000015833) #31	ZNF644 (ENSPSMG00000015882) #32	BARHL2 (ENSPSMG00000015901) #33	ENSPSMG00000015909 #34
Coquerels sifaka	MODERN SPECIES	846	ABCD3 (ENSPCOG00000028862) #7	ARHGAP29 (ENSPCOG00000013337) #8	ABCA4 (ENSPCOG00000027304) #9	GCLM (ENSPCOG00000000314) #10	DNTTIP2 (ENSPCOG00000027395) #11	BCAR3 (ENSPCOG00000022810) #12	FNBP1L (ENSPCOG00000027233) #13	DR1 (ENSPCOG00000025924) #15	CCDC18 (ENSPCOG00000021464) #16	TMED5 (ENSPCOG00000024672) #17	MTF2 (ENSPCOG00000021106) #18	DIPK1A (ENSPCOG00000022059) #19	ENSPCOG00000012924 #20	EVI5 (ENSPCOG00000013584) #21	ENSPCOG00000023529	GFI1 (ENSPCOG00000020540) #22	RPAP2 (ENSPCOG00000021860) #23	GLMN (ENSPCOG00000026708) #24	C1orf146 (ENSPCOG00000014518) #25	BTBD8 (ENSPCOG00000012403) #26	ENSPCOG00000020190	ENSPCOG00000025445	EPHX4 (ENSPCOG00000015391) #27	BRDT (ENSPCOG00000009857) #28	TGFBR3 (ENSPCOG00000020128) #29	CDC7 (ENSPCOG00000022992) #30	ENSPCOG00000026252 #31	ZNF644 (ENSPCOG00000021784) #32	BARHL2 (ENSPCOG00000021096) #33	ZNF326 (ENSPCOG00000023736)	LRRC8D (ENSPCOG00000013095)
Mouse lemur	MODERN SPECIES	11	ARHGAP29 (ENSMICG00000016038) #8	ABCA4 (ENSMICG00000013270) #9	GCLM (ENSMICG00000035919) #10	ENSMICG00000013230 #11	BCAR3 (ENSMICG00000010096) #12	FNBP1L (ENSMICG00000035486) #13	DR1 (ENSMICG00000028249) #15	ENSMICG00000032766	ENSMICG00000014932 #16	ENSMICG00000043917	TMED5 (ENSMICG00000000964) #17	ENSMICG00000003126 #18	DIPK1A (ENSMICG00000011814) #19	ENSMICG00000011805 #20	EVI5 (ENSMICG00000011788) #21	GFI1 (ENSMICG00000047208) #22	ENSMICG00000044808 #23	GLMN (ENSMICG00000008891) #24	C1orf146 (ENSMICG00000008888) #25	BTBD8 (ENSMICG00000033675) #26	ENSMICG00000031257	EPHX4 (ENSMICG00000030659) #27	BRDT (ENSMICG00000014306) #28	TGFBR3 (ENSMICG00000044508) #29	ENSMICG00000031496	CDC7 (ENSMICG00000011588) #30	HFM1 (ENSMICG00000037935) #31	ZNF644 (ENSMICG00000015207) #32	BARHL2 (ENSMICG00000037198) #33	ZNF326 (ENSMICG00000016516)	ENSMICG00000048113
Bushbaby	MODERN SPECIES	125	ABCD3 (ENSOGAG00000009581) #7	ARHGAP29 (ENSOGAG00000014656) #8	ABCA4 (ENSOGAG00000014632) #9	GCLM (ENSOGAG00000014630) #10	DNTTIP2 (ENSOGAG00000027537) #11	BCAR3 (ENSOGAG00000011230) #12	FNBP1L (ENSOGAG00000011225) #13	DR1 (ENSOGAG00000005967) #15	CCDC18 (ENSOGAG00000006059) #16	TMED5 (ENSOGAG00000015057) #17	MTF2 (ENSOGAG00000002432) #18	ENSOGAG00000030106	DIPK1A (ENSOGAG00000013249) #19	RPL5 (ENSOGAG00000013246) ##20	EVI5 (ENSOGAG00000013240) #21	GFI1 (ENSOGAG00000027913) #22	ENSOGAG00000001009 #23	ENSOGAG00000001008 #24	C1orf146 (ENSOGAG00000001007) #25	BTBD8 (ENSOGAG00000028985) #26	ENSOGAG00000001005	ENSOGAG00000029908	ENSOGAG00000034632	EPHX4 (ENSOGAG00000001002) #27	BRDT (ENSOGAG00000001001) #28	ENSOGAG00000029718	TGFBR3 (ENSOGAG00000016364) #29	CDC7 (ENSOGAG00000029298) #30	ENSOGAG00000034533	HFM1 (ENSOGAG00000032369) #31	ZNF644 (ENSOGAG00000000665) #32
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i #11	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i.a #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00910000147262	ENSGT00940000158611 #33
Macaca	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i.a #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00420000029746.e.a.b.a.b	ENSGT00940000158258 #32	ENSGT00910000147262	ENSGT00940000158611 #33
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT01100000264112.a.b	ENSGT00510000047658 #10	ENSGT00510000048142.i.a #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00510000047505.c.b	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00420000029746.e.a.b.a.b	ENSGT00940000158258 #32	ENSGT01100000263539.b.a.a.a.b.b.b.a.a.a.a.a	ENSGT00940000161627.a.a.b.a.b	ENSGT00910000147262	ENSGT00940000158611 #33
Rhesus	MODERN SPECIES		ENSMMUG00000045959 ##20	ENSMMUG00000057430	BCAR3 (ENSMMUG00000015924) #12	FNBP1L (ENSMMUG00000015922) #13	CCDC18 (ENSMMUG00000016812) #16	ENSMMUG00000061598	TMED5 (ENSMMUG00000045421) #17	MTF2 (ENSMMUG00000016808) #18	ENSMMUG00000040115	DIPK1A (ENSMMUG00000005073) #19	ENSMMUG00000051009	RPL5 (ENSMMUG00000005072) ##20	EVI5 (ENSMMUG00000005070) #21	ENSMMUG00000055525	ENSMMUG00000029649	GFI1 (ENSMMUG00000005068) #22	ENSMMUG00000054856	RPAP2 (ENSMMUG00000010096) #23	GLMN (ENSMMUG00000010095) #24	BTBD8 (ENSMMUG00000007180) #26	SETSIP (ENSMMUG00000019986)	BRDT (ENSMMUG00000014018) #28	TGFBR3 (ENSMMUG00000001742) #29	ENSMMUG00000039930	CDC7 (ENSMMUG00000056970) #30	HFM1 (ENSMMUG00000006819) #31	ENSMMUG00000055740	ENSMMUG00000061264	ENSMMUG00000056753	ZNF644 (ENSMMUG00000007635) #32	ENSMMUG00000049678
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000042490 ##20	BCAR3 (ENSMFAG00000045481) #12	FNBP1L (ENSMFAG00000007905) #13	DR1 (ENSMFAG00000036672) #15	ENSMFAG00000048042	CCDC18 (ENSMFAG00000033283) #16	TMED5 (ENSMFAG00000039021) #17	MTF2 (ENSMFAG00000037684) #18	ENSMFAG00000030382	DIPK1A (ENSMFAG00000000290) #19	ENSMFAG00000049451	RPL5 (ENSMFAG00000033619) ##20	EVI5 (ENSMFAG00000003592) #21	ENSMFAG00000044701	ENSMFAG00000061073	GFI1 (ENSMFAG00000045801) #22	RPAP2 (ENSMFAG00000031837) #23	GLMN (ENSMFAG00000035560) #24	BTBD8 (ENSMFAG00000003189) #26	EPHX4 (ENSMFAG00000035355) #27	BRDT (ENSMFAG00000044939) #28	ENSMFAG00000047645	TGFBR3 (ENSMFAG00000002239) #29	ENSMFAG00000000474 #30	ENSMFAG00000003649 #31	ENSMFAG00000048501	ENSMFAG00000060879	ENSMFAG00000062421	ZNF644 (ENSMFAG00000033902) #32	ENSMFAG00000047958	ENSMFAG00000064076
Pig-tailed macaque	MODERN SPECIES	119	ARHGAP29 (ENSMNEG00000032154) #8	ABCA4 (ENSMNEG00000032250) #9	GCLM (ENSMNEG00000044117) #10	ENSMNEG00000041699 #11	ENSMNEG00000015935 ##20	BCAR3 (ENSMNEG00000039069) #12	FNBP1L (ENSMNEG00000043720) #13	DR1 (ENSMNEG00000028696) #15	CCDC18 (ENSMNEG00000038359) #16	TMED5 (ENSMNEG00000035141) #17	MTF2 (ENSMNEG00000007161) #18	ENSMNEG00000030641	ENSMNEG00000044138 ##20	DIPK1A (ENSMNEG00000030760) #19	EVI5 (ENSMNEG00000015327) #21	GFI1 (ENSMNEG00000036338) #22	RPAP2 (ENSMNEG00000037979) #23	GLMN (ENSMNEG00000037105) #24	C1orf146 (ENSMNEG00000045551) #25	BTBD8 (ENSMNEG00000038289) #26	ENSMNEG00000034427	EPHX4 (ENSMNEG00000034540) #27	BRDT (ENSMNEG00000036582) #28	TGFBR3 (ENSMNEG00000035095) #29	ENSMNEG00000009729	ENSMNEG00000026624 #30	ENSMNEG00000039833 #31	ENSMNEG00000043710
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i.a #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000154891.g.a.a	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00910000147262
Olive baboon	MODERN SPECIES		ENSPANG00000013362 #11	ENSPANG00000016856 ##20	BCAR3 (ENSPANG00000003121) #12	FNBP1L (ENSPANG00000021911) #13	DR1 (ENSPANG00000030741) #15	ENSPANG00000050304	CCDC18 (ENSPANG00000000782) #16	TMED5 (ENSPANG00000009369) #17	MTF2 (ENSPANG00000021262) #18	ENSPANG00000007198	ENSPANG00000043375	DIPK1A (ENSPANG00000020946) #19	RPL5 (ENSPANG00000017672) ##20	ENSPANG00000045670	EVI5 (ENSPANG00000012749) #21	GFI1 (ENSPANG00000016433) #22	RPAP2 (ENSPANG00000016897) #23	GLMN (ENSPANG00000024286) #24	C1orf146 (ENSPANG00000020895) #25	BTBD8 (ENSPANG00000005230) #26	SETSIP (ENSPANG00000047435)	EPHX4 (ENSPANG00000011776) #27	ENSPANG00000042609	ENSPANG00000038317	BRDT (ENSPANG00000007564) #28	TGFBR3 (ENSPANG00000016898) #29	ENSPANG00000042933	CDC7 (ENSPANG00000010804) #30	HFM1 (ENSPANG00000009838) #31	ENSPANG00000050646	ENSPANG00000047029
Cercopithecinae_d	ANCESTRAL SPECIES	127	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.i.a #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00910000147262	ENSGT00940000158611 #33	ENSGT00530000063777.b
Drill	MODERN SPECIES	456																GFI1 (ENSMLEG00000036181) #22	RPAP2 (ENSMLEG00000033946) #23	GLMN (ENSMLEG00000029964) #24	C1orf146 (ENSMLEG00000029676) #25	BTBD8 (ENSMLEG00000036376) #26
Sooty mangabey	MODERN SPECIES	146	ARHGAP29 (ENSCATG00000037934) #8	ABCA4 (ENSCATG00000012953) #9	ENSCATG00000045214	GCLM (ENSCATG00000044922) #10	ENSCATG00000036773 #11	BCAR3 (ENSCATG00000035554) #12	FNBP1L (ENSCATG00000022281) #13	DR1 (ENSCATG00000032935) #15	CCDC18 (ENSCATG00000007601) #16	TMED5 (ENSCATG00000045099) #17	MTF2 (ENSCATG00000042583) #18	DIPK1A (ENSCATG00000042332) #19	RPL5 (ENSCATG00000040807) ##20	EVI5 (ENSCATG00000038124) #21	ENSCATG00000041152	GFI1 (ENSCATG00000037873) #22	RPAP2 (ENSCATG00000032941) #23	GLMN (ENSCATG00000007386) #24	C1orf146 (ENSCATG00000007878) #25	BTBD8 (ENSCATG00000039374) #26	EPHX4 (ENSCATG00000029859) #27	BRDT (ENSCATG00000036412) #28	TGFBR3 (ENSCATG00000036600) #29	ENSCATG00000023185	ENSCATG00000032234 #30	HFM1 (ENSCATG00000030987) #31	ZNF644 (ENSCATG00000044807) #32	ENSCATG00000023058	BARHL2 (ENSCATG00000041439) #33	ZNF326 (ENSCATG00000045193)	ENSCATG00000006771
Vervet Monkey	MODERN SPECIES	12	ARHGAP29 (ENSCSAG00000001483) #8	ABCA4 (ENSCSAG00000001482) #9	GCLM (ENSCSAG00000001481) #10	ENSCSAG00000001480 #11	ENSCSAG00000000157 ##20	BCAR3 (ENSCSAG00000001479) #12	FNBP1L (ENSCSAG00000001478) #13	DR1 (ENSCSAG00000001477) #15	CCDC18 (ENSCSAG00000001476) #16	TMED5 (ENSCSAG00000001475) #17	MTF2 (ENSCSAG00000001474) #18	DIPK1A (ENSCSAG00000001472) #19	ENSCSAG00000001471 ##20	EVI5 (ENSCSAG00000001470) #21	ENSCSAG00000000156	GFI1 (ENSCSAG00000001469) #22	RPAP2 (ENSCSAG00000001468) #23	GLMN (ENSCSAG00000001467) #24	C1orf146 (ENSCSAG00000001466) #25	BTBD8 (ENSCSAG00000001465) #26	ENSCSAG00000001464	ENSCSAG00000000155	EPHX4 (ENSCSAG00000001463) #27	BRDT (ENSCSAG00000001462) #28	TGFBR3 (ENSCSAG00000001461) #29	CDC7 (ENSCSAG00000001460) #30	HFM1 (ENSCSAG00000001459) #31	ZNF644 (ENSCSAG00000001458) #32	BARHL2 (ENSCSAG00000001457) #33	ZNF326 (ENSCSAG00000001456)	LRRC8D (ENSCSAG00000000154)
Rhinopithecus	ANCESTRAL SPECIES	378																ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011.c #30	ENSGT00550000074822 #31
Black snub-nosed monkey	MODERN SPECIES	2427																GFI1 (ENSRBIG00000036467) #22	RPAP2 (ENSRBIG00000038463) #23	GLMN (ENSRBIG00000044112) #24	C1orf146 (ENSRBIG00000043686) #25	BTBD8 (ENSRBIG00000038233) #26	CEMIP2 (ENSRBIG00000022748)	ABHD17B (ENSRBIG00000028955)	C9orf85 (ENSRBIG00000001173)	ENSRBIG00000036053
Golden snub-nosed monkey	MODERN SPECIES	779																GFI1 (ENSRROG00000031687) #22
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Hominidae	ANCESTRAL SPECIES	3	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00530000063965.o.a	ENSGT00550000075011 #30	ENSGT00940000155807.a.b	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33
Gorilla	MODERN SPECIES		ABCD3 (ENSGGOG00000009815) #7	ARHGAP29 (ENSGGOG00000002269) #8	ABCA4 (ENSGGOG00000008804) #9	GCLM (ENSGGOG00000016426) #10	DNTTIP2 (ENSGGOG00000000575) #11	BCAR3 (ENSGGOG00000001635) #12	FNBP1L (ENSGGOG00000015943) #13	DR1 (ENSGGOG00000028511) #15	CCDC18 (ENSGGOG00000016744) #16	TMED5 (ENSGGOG00000016111) #17	MTF2 (ENSGGOG00000001308) #18	ENSGGOG00000043223 ##20	DIPK1A (ENSGGOG00000000881) #19	RPL5 (ENSGGOG00000002699) ##20	EVI5 (ENSGGOG00000024347) #21	GFI1 (ENSGGOG00000005320) #22	RPAP2 (ENSGGOG00000006674) #23	GLMN (ENSGGOG00000006658) #24	C1orf146 (ENSGGOG00000006653) #25	ENSGGOG00000000596 #26	ENSGGOG00000013288	EPHX4 (ENSGGOG00000000116) #27	BRDT (ENSGGOG00000022996) #28	TGFBR3 (ENSGGOG00000000922) #29	ENSGGOG00000003216	ENSGGOG00000041760	CDC7 (ENSGGOG00000007545) #30	FEN1 (ENSGGOG00000022237)	HFM1 (ENSGGOG00000038524) #31	ZNF644 (ENSGGOG00000004186) #32	ENSGGOG00000008873 #33
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00550000075011 #30	ENSGT00940000155807.a.b	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Human	MODERN SPECIES		F3 (ENSG00000117525)	ABCD3 (ENSG00000117528) #7	ARHGAP29 (ENSG00000137962) #8	ABCA4 (ENSG00000198691) #9	GCLM (ENSG00000023909) #10	DNTTIP2 (ENSG00000067334) #11	BCAR3 (ENSG00000137936) #12	FNBP1L (ENSG00000137942) #13	DR1 (ENSG00000117505) #15	CCDC18 (ENSG00000122483) #16	TMED5 (ENSG00000117500) #17	MTF2 (ENSG00000143033) #18	DIPK1A (ENSG00000154511) #19	RPL5 (ENSG00000122406) ##20	EVI5 (ENSG00000067208) #21	GFI1 (ENSG00000162676) #22	RPAP2 (ENSG00000122484) #23	GLMN (ENSG00000174842) #24	C1orf146 (ENSG00000203910) #25	BTBD8 (ENSG00000189195) #26	SETSIP (ENSG00000230667)	EPHX4 (ENSG00000172031) #27	BRDT (ENSG00000137948) #28	TGFBR3 (ENSG00000069702) #29	CDC7 (ENSG00000097046) #30	HFM1 (ENSG00000162669) #31	ZNF644 (ENSG00000122482) #32	BARHL2 (ENSG00000143032) #33	ZNF326 (ENSG00000162664)	LRRC8D (ENSG00000171492)	LRRC8C (ENSG00000171488)
Pan	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142.j #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT01020000230401.b.a.m.b	ENSGT00550000075011 #30	ENSGT00940000155807.a.b	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Bonobo	MODERN SPECIES		F3 (ENSPPAG00000033102)	ABCD3 (ENSPPAG00000039827) #7	ARHGAP29 (ENSPPAG00000020199) #8	ABCA4 (ENSPPAG00000035606) #9	GCLM (ENSPPAG00000042369) #10	DNTTIP2 (ENSPPAG00000044098) #11	BCAR3 (ENSPPAG00000029140) #12	FNBP1L (ENSPPAG00000029809) #13	DR1 (ENSPPAG00000027265) #15	CCDC18 (ENSPPAG00000029331) #16	TMED5 (ENSPPAG00000027553) #17	MTF2 (ENSPPAG00000030002) #18	DIPK1A (ENSPPAG00000043970) #19	RPL5 (ENSPPAG00000027174) ##20	EVI5 (ENSPPAG00000034071) #21	GFI1 (ENSPPAG00000042186) #22	RPAP2 (ENSPPAG00000035306) #23	GLMN (ENSPPAG00000039704) #24	C1orf146 (ENSPPAG00000034258) #25	ENSPPAG00000004959 #26	ENSPPAG00000025213	EPHX4 (ENSPPAG00000040443) #27	BRDT (ENSPPAG00000033868) #28	TGFBR3 (ENSPPAG00000027020) #29	ENSPPAG00000035448	CDC7 (ENSPPAG00000024798) #30	ENSPPAG00000042415	HFM1 (ENSPPAG00000024582) #31	ZNF644 (ENSPPAG00000039400) #32	BARHL2 (ENSPPAG00000034283) #33	ZNF326 (ENSPPAG00000014161)
Chimpanzee	MODERN SPECIES		F3 (ENSPTRG00000000977)	ABCD3 (ENSPTRG00000000976) #7	ARHGAP29 (ENSPTRG00000000975) #8	ABCA4 (ENSPTRG00000023377) #9	GCLM (ENSPTRG00000000973) #10	DNTTIP2 (ENSPTRG00000000972) #11	BCAR3 (ENSPTRG00000000971) #12	FNBP1L (ENSPTRG00000000970) #13	DR1 (ENSPTRG00000000969) #15	CCDC18 (ENSPTRG00000000967) #16	TMED5 (ENSPTRG00000000966) #17	MTF2 (ENSPTRG00000000965) #18	DIPK1A (ENSPTRG00000000964) #19	RPL5 (ENSPTRG00000000963) ##20	EVI5 (ENSPTRG00000000962) #21	GFI1 (ENSPTRG00000043053) #22	RPAP2 (ENSPTRG00000000960) #23	GLMN (ENSPTRG00000000959) #24	C1H1orf146 (ENSPTRG00000030530) #25	KIAA1107 (ENSPTRG00000000958) #26	BTBD8 (ENSPTRG00000000956)	SETSIP (ENSPTRG00000052188)	EPHX4 (ENSPTRG00000000955) #27	BRDT (ENSPTRG00000000954) #28	TGFBR3 (ENSPTRG00000000952) #29	ENSPTRG00000046708	CDC7 (ENSPTRG00000043247) #30	ENSPTRG00000046089	HFM1 (ENSPTRG00000000948) #31	ZNF644 (ENSPTRG00000000947) #32	BARHL2 (ENSPTRG00000000946) #33
Orangutan	MODERN SPECIES		F3 (ENSPPYG00000001139)	ABCD3 (ENSPPYG00000001140) #7	ARHGAP29 (ENSPPYG00000001141) #8	ABCA4 (ENSPPYG00000001142) #9	GCLM (ENSPPYG00000032580) #10	DNTTIP2 (ENSPPYG00000030204) #11	BCAR3 (ENSPPYG00000001145) #12	FNBP1L (ENSPPYG00000001146) #13	DR1 (ENSPPYG00000001147) #15	CCDC18 (ENSPPYG00000001148) #16	TMED5 (ENSPPYG00000030133) #17	MTF2 (ENSPPYG00000001150) #18	DIPK1A (ENSPPYG00000001151) #19	RPL5 (ENSPPYG00000001152) ##20	EVI5 (ENSPPYG00000001153) #21	GFI1 (ENSPPYG00000029385) #22	RPAP2 (ENSPPYG00000001154) #23	GLMN (ENSPPYG00000001155) #24	C1orf146 (ENSPPYG00000001156) #25	BTBD8 (ENSPPYG00000029907) #26	EPHX4 (ENSPPYG00000001158) #27	BRDT (ENSPPYG00000001159) #28	TGFBR3 (ENSPPYG00000001160) #29	ENSPPYG00000001161	ENSPPYG00000039807	CDC7 (ENSPPYG00000001162) #30	HFM1 (ENSPPYG00000001163) #31	ENSPPYG00000034790 ##20	ZNF644 (ENSPPYG00000001164) #32	BARHL2 (ENSPPYG00000001165) #33	ZNF326 (ENSPPYG00000001166)
Gibbon	MODERN SPECIES	2	ABCD3 (ENSNLEG00000011044) #7	ARHGAP29 (ENSNLEG00000010961) #8	ABCA4 (ENSNLEG00000010897) #9	GCLM (ENSNLEG00000010871) #10	DNTTIP2 (ENSNLEG00000010816) #11	BCAR3 (ENSNLEG00000010748) #12	FNBP1L (ENSNLEG00000010681) #13	DR1 (ENSNLEG00000010667) #15	CCDC18 (ENSNLEG00000010606) #16	TMED5 (ENSNLEG00000010590) #17	MTF2 (ENSNLEG00000010513) #18	ENSNLEG00000032162	DIPK1A (ENSNLEG00000010507) #19	RPL5 (ENSNLEG00000010500) ##20	EVI5 (ENSNLEG00000010486) #21	GFI1 (ENSNLEG00000010470) #22	RPAP2 (ENSNLEG00000010446) #23	GLMN (ENSNLEG00000010431) #24	C1orf146 (ENSNLEG00000010426) #25	ENSNLEG00000010418 #26	ENSNLEG00000010412	ENSNLEG00000028497	EPHX4 (ENSNLEG00000010405) #27	BRDT (ENSNLEG00000010376) #28	TGFBR3 (ENSNLEG00000010335) #29	ENSNLEG00000030279	ENSNLEG00000029575	ENSNLEG00000033782	CDC7 (ENSNLEG00000010319) #30	HFM1 (ENSNLEG00000010285) #31	ENSNLEG00000034677
Platyrrhini	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A.f #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT01030000234836	ENSGT00940000159250	ENSGT00940000160703
Cebidae	ANCESTRAL SPECIES	1	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A.f #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT01030000234836	ENSGT00940000159250	ENSGT00940000160703
Marmoset	MODERN SPECIES	19	GCLM (ENSCJAG00000017899) #10	DNTTIP2 (ENSCJAG00000017896) #11	BCAR3 (ENSCJAG00000017873) #12	FNBP1L (ENSCJAG00000017821) #13	CCDC18 (ENSCJAG00000017774) #16	TMED5 (ENSCJAG00000017759) #17	MTF2 (ENSCJAG00000017687) #18	ENSCJAG00000022564	DIPK1A (ENSCJAG00000017678) #19	ENSCJAG00000017673 ##20	ENSCJAG00000076513	ENSCJAG00000014949	ENSCJAG00000079907	ENSCJAG00000073420	EVI5 (ENSCJAG00000017619) #21	GFI1 (ENSCJAG00000017609) #22	ENSCJAG00000022354	RPAP2 (ENSCJAG00000017591) #23	GLMN (ENSCJAG00000017552) #24	C1orf146 (ENSCJAG00000017547) #25	BTBD8 (ENSCJAG00000017540) #26	BRDT (ENSCJAG00000017507) #28	ENSCJAG00000010406	TGFBR3 (ENSCJAG00000001778) #29	CDC7 (ENSCJAG00000045959) #30	ENSCJAG00000038757	HFM1 (ENSCJAG00000001843) #31	ENSCJAG00000075350	ZNF644 (ENSCJAG00000001855) #32	BARHL2 (ENSCJAG00000001885) #33	ENSCJAG00000072305
Cebidae_a	ANCESTRAL SPECIES	81	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A.f #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT01030000234836
Bolivian squirrel monkey	MODERN SPECIES	97	ENSSBOG00000024603	ENSSBOG00000018533	ARHGAP29 (ENSSBOG00000021522) #8	ABCA4 (ENSSBOG00000016235) #9	ENSSBOG00000019384	GCLM (ENSSBOG00000025418) #10	DNTTIP2 (ENSSBOG00000030305) #11	BCAR3 (ENSSBOG00000020011) #12	FNBP1L (ENSSBOG00000026856) #13	DR1 (ENSSBOG00000021041) #15	CCDC18 (ENSSBOG00000025896) #16	TMED5 (ENSSBOG00000034141) #17	MTF2 (ENSSBOG00000021350) #18	DIPK1A (ENSSBOG00000020486) #19	EVI5 (ENSSBOG00000021898) #21	GFI1 (ENSSBOG00000031300) #22	RPAP2 (ENSSBOG00000028835) #23	GLMN (ENSSBOG00000011268) #24	ENSSBOG00000024802	C1orf146 (ENSSBOG00000017637) #25	BTBD8 (ENSSBOG00000033979) #26	ENSSBOG00000033324	EPHX4 (ENSSBOG00000029335) #27	BRDT (ENSSBOG00000020614) #28	ENSSBOG00000026362	ENSSBOG00000032704	TGFBR3 (ENSSBOG00000034519) #29	CDC7 (ENSSBOG00000026796) #30	HFM1 (ENSSBOG00000027456) #31	ZNF644 (ENSSBOG00000025807) #32	BARHL2 (ENSSBOG00000022168) #33
Capuchin	MODERN SPECIES	166	GCLM (ENSCCAG00000017215) #10	ENSCCAG00000019911	DNTTIP2 (ENSCCAG00000025785) #11	BCAR3 (ENSCCAG00000036151) #12	FNBP1L (ENSCCAG00000034576) #13	DR1 (ENSCCAG00000030021) #15	CCDC18 (ENSCCAG00000030645) #16	TMED5 (ENSCCAG00000036284) #17	MTF2 (ENSCCAG00000037974) #18	ENSCCAG00000026616	ENSCCAG00000031400	DIPK1A (ENSCCAG00000033496) #19	RPL5 (ENSCCAG00000024885) ##20	ENSCCAG00000021472	EVI5 (ENSCCAG00000034070) #21	GFI1 (ENSCCAG00000036072) #22	RPAP2 (ENSCCAG00000024859) #23	GLMN (ENSCCAG00000038123) #24	C1orf146 (ENSCCAG00000032973) #25	BTBD8 (ENSCCAG00000031364) #26	ENSCCAG00000029619	ENSCCAG00000036616	ENSCCAG00000033925	ENSCCAG00000027791	ENSCCAG00000038015	EPHX4 (ENSCCAG00000029678) #27	ENSCCAG00000025258	BRDT (ENSCCAG00000031906) #28	ENSCCAG00000022756	TGFBR3 (ENSCCAG00000029516) #29	ENSCCAG00000023085
Mas night monkey	MODERN SPECIES	366												DIPK1A (ENSANAG00000030882) #19	RPL5 (ENSANAG00000030599) ##20	ENSANAG00000030407	EVI5 (ENSANAG00000022148) #21	GFI1 (ENSANAG00000019656) #22	RPAP2 (ENSANAG00000027517) #23	GLMN (ENSANAG00000021000) #24	C1orf146 (ENSANAG00000025057) #25	BTBD8 (ENSANAG00000027755) #26
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Glires	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Rabbit	MODERN SPECIES	4	ARHGAP29 (ENSOCUG00000009819) #8	ABCA4 (ENSOCUG00000009797) #9	GCLM (ENSOCUG00000013796) #10	DNTTIP2 (ENSOCUG00000008212) #11	BCAR3 (ENSOCUG00000015440) #12	FNBP1L (ENSOCUG00000008277) #13	ENSOCUG00000028085	ENSOCUG00000038039	DR1 (ENSOCUG00000007398) #15	CCDC18 (ENSOCUG00000012434) #16	TMED5 (ENSOCUG00000012427) #17	MTF2 (ENSOCUG00000013736) #18	DIPK1A (ENSOCUG00000027778) #19	ENSOCUG00000010089 #20	EVI5 (ENSOCUG00000001807) #21	GFI1 (ENSOCUG00000023553) #22	RPAP2 (ENSOCUG00000001804) #23	ENSOCUG00000001803 #24	C1orf146 (ENSOCUG00000003953) #25	ENSOCUG00000021982	BTBD8 (ENSOCUG00000011062) #26	EPHX4 (ENSOCUG00000017476) #27	BRDT (ENSOCUG00000017466) #28	TGFBR3 (ENSOCUG00000016083) #29	CDC7 (ENSOCUG00000026347) #30	ENSOCUG00000024863	HFM1 (ENSOCUG00000029252) #31	ENSOCUG00000036391	ENSOCUG00000005209 #32	BARHL2 (ENSOCUG00000004213) #33	ZNF326 (ENSOCUG00000012291)
Pika	MODERN SPECIES	2697															EVI5 (ENSOPRG00000001484) #21	GFI1 (ENSOPRG00000001473) #22
Rodentia	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00950000183210.d.b ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Murinae	ANCESTRAL SPECIES	12	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Mus	ANCESTRAL SPECIES	14	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.k #25	ENSGT00390000008285.l #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.k #25	ENSGT00390000008285.l #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.k #25	ENSGT00390000008285.l #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Mouse	MODERN SPECIES	14	Cplx1 (ENSMUSG00000033615)	Pcgf3 (ENSMUSG00000033623)	Mfsd7a (ENSMUSG00000029490)	Atp5k (ENSMUSG00000050856)	Pde6b (ENSMUSG00000029491)	Gm42517 (ENSMUSG00000105867)	Pigg (ENSMUSG00000029263)	Dr1 (ENSMUSG00000029265) #15	Ccdc18 (ENSMUSG00000056531) #16	Tmed5 (ENSMUSG00000063406) #17	Mtf2 (ENSMUSG00000029267) #18	Dipk1a (ENSMUSG00000029270) #19	Rpl5 (ENSMUSG00000058558) #20	Ube2d2b (ENSMUSG00000063447)	Evi5 (ENSMUSG00000011831) #21	Gfi1 (ENSMUSG00000029275) #22	Rpap2 (ENSMUSG00000033773) #23	Glmn (ENSMUSG00000029276) #24	1700028K03Rik (ENSMUSG00000089798) #25	Gm42669 (ENSMUSG00000106631)	Btbd8 (ENSMUSG00000111375) #26	Lpcat2b (ENSMUSG00000033794)	Ephx4 (ENSMUSG00000033805) #27	Brdt (ENSMUSG00000029279) #28	Tgfbr3 (ENSMUSG00000029287) #29	Cdc7 (ENSMUSG00000029283) #30	Hfm1 (ENSMUSG00000043410) #31	Zfp644 (ENSMUSG00000049606) #32	Barhl2 (ENSMUSG00000034384) #33	Zfp326 (ENSMUSG00000029290)	Lrrc8d (ENSMUSG00000046079)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.k #25	ENSGT00390000008285.l #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
spretus	MODERN SPECIES	14	Gak (MGP_SPRETEiJ_G0028522)	Cplx1 (MGP_SPRETEiJ_G0028521)	Pcgf3 (MGP_SPRETEiJ_G0028520)	Mfsd7a (MGP_SPRETEiJ_G0028519)	Atp5k (MGP_SPRETEiJ_G0028518)	Pde6b (MGP_SPRETEiJ_G0028517)	Pigg (MGP_SPRETEiJ_G0028516)	Dr1 (MGP_SPRETEiJ_G0028515) #15	Ccdc18 (MGP_SPRETEiJ_G0028514) #16	Tmed5 (MGP_SPRETEiJ_G0028513) #17	Mtf2 (MGP_SPRETEiJ_G0028512) #18	Dipk1a (MGP_SPRETEiJ_G0028511) #19	Rpl5 (MGP_SPRETEiJ_G0028510) #20	Ube2d2b (MGP_SPRETEiJ_G0028509)	Evi5 (MGP_SPRETEiJ_G0028508) #21	Gfi1 (MGP_SPRETEiJ_G0028507) #22	Rpap2 (MGP_SPRETEiJ_G0028506) #23	Glmn (MGP_SPRETEiJ_G0028505) #24	1700028K03Rik (MGP_SPRETEiJ_G0028504) #25	MGP_SPRETEiJ_G0028503 #25	MGP_SPRETEiJ_G0028502 #26	MGP_SPRETEiJ_G0028501	Lpcat2b (MGP_SPRETEiJ_G0028500)	Ephx4 (MGP_SPRETEiJ_G0028499) #27	Brdt (MGP_SPRETEiJ_G0028498) #28	Tgfbr3 (MGP_SPRETEiJ_G0028497) #29	Cdc7 (MGP_SPRETEiJ_G0028496) #30	Hfm1 (MGP_SPRETEiJ_G0028495) #31	Zfp644 (MGP_SPRETEiJ_G0028494) #32	MGP_SPRETEiJ_G0028493	Barhl2 (MGP_SPRETEiJ_G0028492) #33
Steppe mouse	MODERN SPECIES	3278	ENSMSIG00000020698	Pde6b (ENSMSIG00000020631)	ENSMSIG00000020619	Gm42517 (ENSMSIG00000020614)	Pigg (ENSMSIG00000020443)	Dr1 (ENSMSIG00000020419) #15	ENSMSIG00000020415	Ccdc18 (ENSMSIG00000020376) #16	Tmed5 (ENSMSIG00000020304) #17	Mtf2 (ENSMSIG00000020200) #18	ENSMSIG00000020174	Dipk1a (ENSMSIG00000020148) #19	Rpl5 (ENSMSIG00000020111) #20	Ube2d2b (ENSMSIG00000020104)	Evi5 (ENSMSIG00000020061) #21	Gfi1 (ENSMSIG00000020015) #22	Rpap2 (ENSMSIG00000019128) #23	Glmn (ENSMSIG00000019032) #24	1700028K03Rik (ENSMSIG00000019009) #25	ENSMSIG00000019000	Btbd8 (ENSMSIG00000018850) #26	Lpcat2b (ENSMSIG00000018846)	Ephx4 (ENSMSIG00000018816) #27	Brdt (ENSMSIG00000018799) #28	Tgfbr3 (ENSMSIG00000018764) #29	Cdc7 (ENSMSIG00000018634) #30	Hfm1 (ENSMSIG00000018431) #31	Zfp644 (ENSMSIG00000018329) #32	Barhl2 (ENSMSIG00000018312) #33	Zfp326 (ENSMSIG00000018258)	Lrrc8d (ENSMSIG00000018253)
Ryukyu mouse	MODERN SPECIES	14	Gak (MGP_CAROLIEiJ_G0027523)	Cplx1 (MGP_CAROLIEiJ_G0027522)	Pcgf3 (MGP_CAROLIEiJ_G0027521)	Mfsd7a (MGP_CAROLIEiJ_G0027520)	Atp5k (MGP_CAROLIEiJ_G0027519)	Pde6b (MGP_CAROLIEiJ_G0027518)	Pigg (MGP_CAROLIEiJ_G0027517)	Dr1 (MGP_CAROLIEiJ_G0027516) #15	Ccdc18 (MGP_CAROLIEiJ_G0027515) #16	Tmed5 (MGP_CAROLIEiJ_G0027514) #17	MGP_CAROLIEiJ_G0027513 #18	Dipk1a (MGP_CAROLIEiJ_G0027512) #19	Rpl5 (MGP_CAROLIEiJ_G0027511) #20	Ube2d2b (MGP_CAROLIEiJ_G0027510)	Evi5 (MGP_CAROLIEiJ_G0027509) #21	Gfi1 (MGP_CAROLIEiJ_G0027508) #22	Rpap2 (MGP_CAROLIEiJ_G0027507) #23	Glmn (MGP_CAROLIEiJ_G0027506) #24	1700028K03Rik (MGP_CAROLIEiJ_G0027505) #25	MGP_CAROLIEiJ_G0027504 #25	MGP_CAROLIEiJ_G0027503 #26	MGP_CAROLIEiJ_G0027502	Lpcat2b (MGP_CAROLIEiJ_G0027501)	Ephx4 (MGP_CAROLIEiJ_G0027500) #27	Brdt (MGP_CAROLIEiJ_G0027499) #28	Tgfbr3 (MGP_CAROLIEiJ_G0027498) #29	Cdc7 (MGP_CAROLIEiJ_G0027497) #30	Hfm1 (MGP_CAROLIEiJ_G0027496) #31	Zfp644 (MGP_CAROLIEiJ_G0027495) #32	Barhl2 (MGP_CAROLIEiJ_G0027494) #33	Zfp326 (MGP_CAROLIEiJ_G0027493)
Shrew mouse	MODERN SPECIES	4	Cplx1 (MGP_PahariEiJ_G0017295)	Pcgf3 (MGP_PahariEiJ_G0017294)	Mfsd7a (MGP_PahariEiJ_G0017293)	Atp5k (MGP_PahariEiJ_G0017292)	Pde6b (MGP_PahariEiJ_G0017291)	Pigg (MGP_PahariEiJ_G0017290)	Dr1 (MGP_PahariEiJ_G0017289) #15	Ccdc18 (MGP_PahariEiJ_G0017288) #16	Tmed5 (MGP_PahariEiJ_G0017287) #17	Mtf2 (MGP_PahariEiJ_G0017286) #18	Dipk1a (MGP_PahariEiJ_G0017285) #19	Rpl5 (MGP_PahariEiJ_G0017284) #20	Ube2d2b (MGP_PahariEiJ_G0017283)	Evi5 (MGP_PahariEiJ_G0017282) #21	MGP_PahariEiJ_G0017281	Gfi1 (MGP_PahariEiJ_G0017280) #22	Rpap2 (MGP_PahariEiJ_G0017279) #23	Glmn (MGP_PahariEiJ_G0017278) #24	1700028K03Rik (MGP_PahariEiJ_G0017277) #25	MGP_PahariEiJ_G0017276 #25	MGP_PahariEiJ_G0017275 #26	MGP_PahariEiJ_G0017274	Lpcat2b (MGP_PahariEiJ_G0017273)	Ephx4 (MGP_PahariEiJ_G0017272) #27	Brdt (MGP_PahariEiJ_G0017271) #28	Tgfbr3 (MGP_PahariEiJ_G0017270) #29	Cdc7 (MGP_PahariEiJ_G0017269) #30	Hfm1 (MGP_PahariEiJ_G0017268) #31	Zfp644 (MGP_PahariEiJ_G0017267) #32	Barhl2 (MGP_PahariEiJ_G0017266) #33	MGP_PahariEiJ_G0017265
Rat	MODERN SPECIES	5	Gak (ENSRNOG00000000048)	Pcgf3 (ENSRNOG00000000062)	Slc49a3 (ENSRNOG00000023937)	Atp5me (ENSRNOG00000000064)	Pde6b (ENSRNOG00000000065)	Pigg (ENSRNOG00000071170)	Dr1 (ENSRNOG00000000070) #15	Ccdc18 (ENSRNOG00000024545) #16	Tmed5 (ENSRNOG00000000073) #17	Mtf2 (ENSRNOG00000000075) #18	Dipk1a (ENSRNOG00000023533) #19	Rpl5 (ENSRNOG00000023529) ##20	Evi5 (ENSRNOG00000002039) #21	LOC108352688 (ENSRNOG00000068623)	Ube2d2b (ENSRNOG00000063388)	Gfi1 (ENSRNOG00000002042) #22	Rpap2 (ENSRNOG00000023484) #23	Glmn (ENSRNOG00000002054) #24	C14h1orf146 (ENSRNOG00000047876) #25	Btbd8 (ENSRNOG00000023446) #26	Lpcat2b (ENSRNOG00000055849)	Ephx4 (ENSRNOG00000023389) #27	Brdt (ENSRNOG00000002073) #28	Tgfbr3 (ENSRNOG00000002093) #29	Cdc7 (ENSRNOG00000002105) #30	LOC690138 (ENSRNOG00000064883)	Hfm1 (ENSRNOG00000023299) #31	Zfp644 (ENSRNOG00000002112) #32	ENSRNOG00000070225	Barhl2 (ENSRNOG00000002117) #33	Zfp326 (ENSRNOG00000047761)
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010.i.b #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Cricetinae	ANCESTRAL SPECIES	50	ENSGT00940000159527	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00910000144269	ENSGT00550000075010.i.b #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Chinese hamster chok1gshd	MODERN SPECIES	229	Pcgf3 (ENSCGRG00001011904)	Mfsd7a (ENSCGRG00001015734)	Atp5k (ENSCGRG00001009513)	Pde6b (ENSCGRG00001015377)	Pigg (ENSCGRG00001017797)	ENSCGRG00001014204 #15	ENSCGRG00001017631	Ccdc18 (ENSCGRG00001018990) #16	Tmed5 (ENSCGRG00001024936) #17	Mtf2 (ENSCGRG00001009422) #18	ENSCGRG00001004002	Dipk1a (ENSCGRG00001004793) #19	ENSCGRG00001025004 #20	Ube2d2b (ENSCGRG00001003528)	Evi5 (ENSCGRG00001022415) #21	Gfi1 (ENSCGRG00001015432) #22	Rpap2 (ENSCGRG00001024341) #23	Glmn (ENSCGRG00001001035) #24	1700028K03Rik (ENSCGRG00001012792) #25	Btbd8 (ENSCGRG00001022491) #26	Lpcat2b (ENSCGRG00001005519)	Ephx4 (ENSCGRG00001001386) #27	Brdt (ENSCGRG00001024776) #28	Tgfbr3 (ENSCGRG00001014911) #29	Cdc7 (ENSCGRG00001010556) #30	Hfm1 (ENSCGRG00001016995) #31	Zfp644 (ENSCGRG00001019117) #32	Barhl2 (ENSCGRG00001015439) #33	ENSCGRG00001014669	Zfp326 (ENSCGRG00001001292)	Lrrc8d (ENSCGRG00001002696)
Golden Hamster	MODERN SPECIES	689	Cplx1 (ENSMAUG00000013358)	Pcgf3 (ENSMAUG00000018210)	Mfsd7a (ENSMAUG00000008667)	ENSMAUG00000019145	Pde6b (ENSMAUG00000018594)	Pigg (ENSMAUG00000012910)	ENSMAUG00000010844 #15	Ccdc18 (ENSMAUG00000006968) #16	Tmed5 (ENSMAUG00000013238) #17	Mtf2 (ENSMAUG00000016120) #18	Dipk1a (ENSMAUG00000003577) #19	Rpl5 (ENSMAUG00000011020) #20	Ube2d2b (ENSMAUG00000008501)	ENSMAUG00000008132	Evi5 (ENSMAUG00000016967) #21	ENSMAUG00000021273 #22	ENSMAUG00000022098 #23	ENSMAUG00000006064 #24	1700028K03Rik (ENSMAUG00000003755) #25	Btbd8 (ENSMAUG00000021368) #26	Lpcat2b (ENSMAUG00000007842)	Ephx4 (ENSMAUG00000009231) #27	Brdt (ENSMAUG00000013483) #28	Tgfbr3 (ENSMAUG00000017737) #29	Cdc7 (ENSMAUG00000018713) #30	Hfm1 (ENSMAUG00000018858) #31	Zfp644 (ENSMAUG00000019393) #32	ENSMAUG00000016699	Barhl2 (ENSMAUG00000013573) #33	Zfp326 (ENSMAUG00000020840)	Lrrc8d (ENSMAUG00000012239)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00950000182938.b.b.b.a	ENSGT00940000158395	ENSGT01030000234625.C	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00730000114722	ENSGT00910000144269	ENSGT00550000075010.i.b #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000164947	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b
Prairie vole	MODERN SPECIES	349	ENSMOCG00000020467	Cplx1 (ENSMOCG00000013426)	Pcgf3 (ENSMOCG00000004681)	Mfsd7a (ENSMOCG00000021949)	ENSMOCG00000004631	Pde6b (ENSMOCG00000021100)	Pigg (ENSMOCG00000008921)	Dr1 (ENSMOCG00000018088) #15	Ccdc18 (ENSMOCG00000014483) #16	Tmed5 (ENSMOCG00000018586) #17	Mtf2 (ENSMOCG00000001192) #18	Dipk1a (ENSMOCG00000021898) #19	ENSMOCG00000018015 #20	ENSMOCG00000003175	ENSMOCG00000008605 #21	ENSMOCG00000004478 #22	ENSMOCG00000012852 #23	Glmn (ENSMOCG00000005897) #24	1700028K03Rik (ENSMOCG00000013743) #25	ENSMOCG00000018136 #26	ENSMOCG00000016302	Lpcat2b (ENSMOCG00000015435)	Ephx4 (ENSMOCG00000013407) #27	Brdt (ENSMOCG00000018633) #28	Tgfbr3 (ENSMOCG00000009350) #29	Cdc7 (ENSMOCG00000010463) #30	Hfm1 (ENSMOCG00000014812) #31	Zfp644 (ENSMOCG00000013871) #32	ENSMOCG00000004988	Barhl2 (ENSMOCG00000014500) #33	ENSMOCG00000012017
Northern American deer mouse	MODERN SPECIES	1	Pcgf3 (ENSPEMG00000020597)	Mfsd7a (ENSPEMG00000020866)	ENSPEMG00000021488	Pde6b (ENSPEMG00000023203)	Gm42517 (ENSPEMG00000024623)	Pigg (ENSPEMG00000022476)	Dr1 (ENSPEMG00000030546) #15	Ccdc18 (ENSPEMG00000024210) #16	Tmed5 (ENSPEMG00000021997) #17	Mtf2 (ENSPEMG00000021201) #18	Dipk1a (ENSPEMG00000000699) #19	Rpl5 (ENSPEMG00000023054) #20	ENSPEMG00000026172	Ube2d2b (ENSPEMG00000028655)	Evi5 (ENSPEMG00000016471) #21	Gfi1 (ENSPEMG00000024396) #22	Rpap2 (ENSPEMG00000022421) #23	Glmn (ENSPEMG00000023068) #24	1700028K03Rik (ENSPEMG00000021512) #25	Btbd8 (ENSPEMG00000014093) #26	ENSPEMG00000021654	Lpcat2b (ENSPEMG00000015365)	Ephx4 (ENSPEMG00000022572) #27	ENSPEMG00000029986	Brdt (ENSPEMG00000022451) #28	Tgfbr3 (ENSPEMG00000022511) #29	Cdc7 (ENSPEMG00000022245) #30	Hfm1 (ENSPEMG00000022852) #31	ENSPEMG00000030938	ENSPEMG00000024502	Zfp644 (ENSPEMG00000014688) #32
Upper Galilee mountains blind mole rat	MODERN SPECIES	526								Ccdc18 (ENSNGAG00000019567) #16	Tmed5 (ENSNGAG00000014311) #17	ENSNGAG00000016494 #18	ENSNGAG00000002131	Dipk1a (ENSNGAG00000014701) #19	Rpl5 (ENSNGAG00000017991) #20	Ube2d2b (ENSNGAG00000018182)	ENSNGAG00000006125 #21	ENSNGAG00000002549 #22	ENSNGAG00000015570 #23	ENSNGAG00000002782 #24	1700028K03Rik (ENSNGAG00000022230) #25	ENSNGAG00000019904	Btbd8 (ENSNGAG00000022166) #26	Ephx4 (ENSNGAG00000003952) #27	Brdt (ENSNGAG00000016921) #28	Tgfbr3 (ENSNGAG00000019749) #29	Cdc7 (ENSNGAG00000014479) #30	ENSNGAG00000007826	Hfm1 (ENSNGAG00000011080) #31	Zfp644 (ENSNGAG00000017595) #32	ENSNGAG00000016460	Barhl2 (ENSNGAG00000015074) #33	Zfp326 (ENSNGAG00000019330)
Lesser Egyptian jerboa	MODERN SPECIES	52							Bcar3 (ENSJJAG00000023051) #12	Fnbp1l (ENSJJAG00000022895) #13	ENSJJAG00000004897 #15	Ccdc18 (ENSJJAG00000005309) #16	ENSJJAG00000017003 #17	Mtf2 (ENSJJAG00000002393) #18	Dipk1a (ENSJJAG00000020255) #19	ENSJJAG00000019168 ##20	ENSJJAG00000000431 #21	ENSJJAG00000022622 #22	ENSJJAG00000012247 #23	Glmn (ENSJJAG00000015862) #24	1700028K03Rik (ENSJJAG00000006929) #25	Btbd8 (ENSJJAG00000023838) #26	ENSJJAG00000024014	Ephx4 (ENSJJAG00000021224) #27	Brdt (ENSJJAG00000016191) #28	Tgfbr3 (ENSJJAG00000017313) #29	Cdc7 (ENSJJAG00000015046) #30	Hfm1 (ENSJJAG00000017198) #31	Zfp644 (ENSJJAG00000016137) #32	Barhl2 (ENSJJAG00000011319) #33	ENSJJAG00000000694	Zfp326 (ENSJJAG00000019314)	Lrrc8d (ENSJJAG00000000640)
Kangaroo rat	MODERN SPECIES	358	F3 (ENSDORG00000023704)	Abcd3 (ENSDORG00000003729) #7	Arhgap29 (ENSDORG00000005953) #8	Abca4 (ENSDORG00000000345) #9	Gclm (ENSDORG00000006111) #10	ENSDORG00000023662 #11	Bcar3 (ENSDORG00000006624) #12	Fnbp1l (ENSDORG00000006623) #13	Dr1 (ENSDORG00000029179) #15	Ccdc18 (ENSDORG00000004844) #16	Tmed5 (ENSDORG00000029519) #17	Mtf2 (ENSDORG00000028633) #18	Dipk1a (ENSDORG00000005676) #19	Rpl5 (ENSDORG00000005674) #20	Evi5 (ENSDORG00000004209) #21	ENSDORG00000023443 #22	ENSDORG00000012030 #23	Glmn (ENSDORG00000012023) #24	ENSDORG00000005618 #26	ENSDORG00000005617	Ephx4 (ENSDORG00000006679) #27	Brdt (ENSDORG00000016543) #28	Tgfbr3 (ENSDORG00000009482) #29	Cdc7 (ENSDORG00000014664) #30	Hfm1 (ENSDORG00000014661) #31	Zfp644 (ENSDORG00000026900) #32	Barhl2 (ENSDORG00000011499) #33	Zfp326 (ENSDORG00000014049)	ENSDORG00000000376	Lrrc8c (ENSDORG00000026385)	Lrrc8b (ENSDORG00000010331)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.a #17	ENSGT00940000155468.l.b #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.b.a.a #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.b.a.a #17	ENSGT00940000155468.l.b.b #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.b.b #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.w.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Long-tailed chinchilla	MODERN SPECIES	130	ARHGAP29 (ENSCLAG00000004627) #8	ABCA4 (ENSCLAG00000005461) #9	GCLM (ENSCLAG00000005983) #10	DNTTIP2 (ENSCLAG00000006829) #11	BCAR3 (ENSCLAG00000007644) #12	FNBP1L (ENSCLAG00000008001) #13	DR1 (ENSCLAG00000009918) #15	CCDC18 (ENSCLAG00000004649) #16	TMED5 (ENSCLAG00000007030) #17	MTF2 (ENSCLAG00000007846) #18	ENSCLAG00000008285	ENSCLAG00000017681	DIPK1A (ENSCLAG00000008376) #19	ENSCLAG00000008425 #20	EVI5 (ENSCLAG00000008558) #21	GFI1 (ENSCLAG00000005915) #22	RPAP2 (ENSCLAG00000006291) #23	GLMN (ENSCLAG00000006922) #24	C1orf146 (ENSCLAG00000008485) #25	BTBD8 (ENSCLAG00000005766) #26	ENSCLAG00000006057	EPHX4 (ENSCLAG00000006155) #27	BRDT (ENSCLAG00000006404) #28	TGFBR3 (ENSCLAG00000007233) #29	CDC7 (ENSCLAG00000007469) #30	HFM1 (ENSCLAG00000005173) #31	ZNF644 (ENSCLAG00000006797) #32	BARHL2 (ENSCLAG00000004382) #33	ZNF326 (ENSCLAG00000004446)	LRRC8D (ENSCLAG00000017652)	LRRC8C (ENSCLAG00000004887)
Degu	MODERN SPECIES	115	ENSODEG00000006568 #12	ENSODEG00000006845 #12	FNBP1L (ENSODEG00000006211) #13	ENSODEG00000019152	ENSODEG00000019219	DR1 (ENSODEG00000006106) #15	ENSODEG00000019300	CCDC18 (ENSODEG00000005096) #16	ENSODEG00000004565	TMED5 (ENSODEG00000005461) #17	MTF2 (ENSODEG00000005685) #18	ENSODEG00000019282	DIPK1A (ENSODEG00000006544) #19	ENSODEG00000005413 #20	ENSODEG00000006057 #21	ENSODEG00000006410 #22	ENSODEG00000004664	ENSODEG00000004891 #23	GLMN (ENSODEG00000005188) #24	C1orf146 (ENSODEG00000005893) #25	ENSODEG00000019394	BTBD8 (ENSODEG00000006488) #26	ENSODEG00000007844	ENSODEG00000005277	EPHX4 (ENSODEG00000005661) #27	BRDT (ENSODEG00000006335) #28	ENSODEG00000005197	ENSODEG00000019153	TGFBR3 (ENSODEG00000005656) #29	CDC7 (ENSODEG00000007352) #30	ENSODEG00000006243 #31
Guinea pig	MODERN SPECIES	2	F3 (ENSCPOG00000002092)	ABCD3 (ENSCPOG00000002087) #7	ARHGAP29 (ENSCPOG00000015466) #8	ABCA4 (ENSCPOG00000015461) #9	ENSCPOG00000037468 #10	ENSCPOG00000031630 #11	BCAR3 (ENSCPOG00000005604) #12	FNBP1L (ENSCPOG00000005155) #13	DR1 (ENSCPOG00000033199) #15	CCDC18 (ENSCPOG00000037069) #16	ENSCPOG00000032129 #17	MTF2 (ENSCPOG00000012184) #18	DIPK1A (ENSCPOG00000000700) #19	ENSCPOG00000032453 #20	EVI5 (ENSCPOG00000006917) #21	GFI1 (ENSCPOG00000011727) #22	RPAP2 (ENSCPOG00000007163) #23	GLMN (ENSCPOG00000007152) #24	C1orf146 (ENSCPOG00000007147) #25	BTBD8 (ENSCPOG00000008296) #26	ENSCPOG00000012159	EPHX4 (ENSCPOG00000001758) #27	ENSCPOG00000003841 #28	TGFBR3 (ENSCPOG00000007217) #29	CDC7 (ENSCPOG00000012756) #30	HFM1 (ENSCPOG00000007421) #31	ZNF644 (ENSCPOG00000035010) #32	BARHL2 (ENSCPOG00000019619) #33	ZNF326 (ENSCPOG00000007332)	LRRC8D (ENSCPOG00000008295)	LRRC8C (ENSCPOG00000033092)
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000016483 #11	BCAR3 (ENSHGLG00000009405) #12	FNBP1L (ENSHGLG00000033036) #13	ENSHGLG00000004219 #15	CCDC18 (ENSHGLG00000004402) #16	ENSHGLG00000032551	ENSHGLG00000006551 #17	ENSHGLG00000007932 #18	ENSHGLG00000049269	ENSHGLG00000045561	ENSHGLG00000004684 #19	ENSHGLG00000004717 #20	ENSHGLG00000006656 ##20	EVI5 (ENSHGLG00000005267) #21	ENSHGLG00000047533	GFI1 (ENSHGLG00000008020) #22	ENSHGLG00000046873	RPAP2 (ENSHGLG00000009983) #23	ENSHGLG00000011940 #24	ENSHGLG00000012510 #25	ENSHGLG00000012851	BTBD8 (ENSHGLG00000008571) #26	ENSHGLG00000046149	ENSHGLG00000033060	ENSHGLG00000010230 #27	BRDT (ENSHGLG00000004317) #28	ENSHGLG00000046123	ENSHGLG00000004997 #29	CDC7 (ENSHGLG00000046565) #30	HFM1 (ENSHGLG00000007780) #31	ZNF644 (ENSHGLG00000008786) #32
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.a #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Marmotini	ANCESTRAL SPECIES	77	ENSGT00950000183110.b.b.g #8	ENSGT00950000183110.b.b.h.a #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.a #17	ENSGT00950000183180.b #18	ENSGT00390000016988.a.a.a.a.a.a.b	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Alpin marmot	MODERN SPECIES	70	ENSMMMG00000023996 #9	GCLM (ENSMMMG00000023997) #10	DNTTIP2 (ENSMMMG00000023998) #11	ENSMMMG00000023999	BCAR3 (ENSMMMG00000024000) #12	FNBP1L (ENSMMMG00000024001) #13	DR1 (ENSMMMG00000024003) #15	ENSMMMG00000024004	CCDC18 (ENSMMMG00000024006) #16	TMED5 (ENSMMMG00000024010) #17	ENSMMMG00000024011 #18	ENSMMMG00000024013	DIPK1A (ENSMMMG00000024014) #19	ENSMMMG00000024016 #20	EVI5 (ENSMMMG00000024020) #21	GFI1 (ENSMMMG00000024023) #22	RPAP2 (ENSMMMG00000024024) #23	GLMN (ENSMMMG00000024029) #24	C1orf146 (ENSMMMG00000024030) #25	BTBD8 (ENSMMMG00000024032) #26	ENSMMMG00000024033	EPHX4 (ENSMMMG00000024034) #27	ENSMMMG00000024035 #28	ENSMMMG00000024036	ENSMMMG00000024037 #28	TGFBR3 (ENSMMMG00000024040) #29	CDC7 (ENSMMMG00000024042) #30	HFM1 (ENSMMMG00000024043) #31	ZNF644 (ENSMMMG00000024044) #32	BARHL2 (ENSMMMG00000024045) #33	ZNF326 (ENSMMMG00000024046)
Marmotini_b	ANCESTRAL SPECIES	116	ENSGT00950000183110.b.b.g #8	ENSGT00950000183110.b.b.h.a #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468.l.a #17	ENSGT00950000183180.b #18	ENSGT00390000016988.a.a.a.a.a.a.b	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Squirrel	MODERN SPECIES	137	ENSSTOG00000000308 #8	ENSSTOG00000033918 #9	ENSSTOG00000034098 #8	ABCA4 (ENSSTOG00000000294) #9	ENSSTOG00000030847 #10	DNTTIP2 (ENSSTOG00000027499) #11	ENSSTOG00000014735 #12	FNBP1L (ENSSTOG00000014723) #13	DR1 (ENSSTOG00000014720) #15	CCDC18 (ENSSTOG00000000234) #16	TMED5 (ENSSTOG00000028196) #17	MTF2 (ENSSTOG00000000231) #18	DIPK1A (ENSSTOG00000023846) #19	ENSSTOG00000010256 #20	EVI5 (ENSSTOG00000015190) #21	GFI1 (ENSSTOG00000014583) #22	ENSSTOG00000030075 #23	GLMN (ENSSTOG00000022944) #24	C1orf146 (ENSSTOG00000012506) #25	BTBD8 (ENSSTOG00000027118) #26	ENSSTOG00000012470	EPHX4 (ENSSTOG00000022582) #27	ENSSTOG00000003060 #28	TGFBR3 (ENSSTOG00000011061) #29	CDC7 (ENSSTOG00000002130) #30	ENSSTOG00000008477 #31	ZNF644 (ENSSTOG00000027631) #32	BARHL2 (ENSSTOG00000025888) #33	ZNF326 (ENSSTOG00000005176)	LRRC8D (ENSSTOG00000005165)	LRRC8C (ENSSTOG00000010193)
Arctic ground squirrel	MODERN SPECIES	283			ENSUPAG00010006957 #9	GCLM (ENSUPAG00010007006) #10	DNTTIP2 (ENSUPAG00010007018) #11	BCAR3 (ENSUPAG00010007024) #12	FNBP1L (ENSUPAG00010007070) #13	DR1 (ENSUPAG00010007132) #15	CCDC18 (ENSUPAG00010007139) #16	TMED5 (ENSUPAG00010007183) #17	MTF2 (ENSUPAG00010007198) #18	ENSUPAG00010007245	DIPK1A (ENSUPAG00010007249) #19	ENSUPAG00010007265 #20	EVI5 (ENSUPAG00010007304) #21	GFI1 (ENSUPAG00010007431) #22	RPAP2 (ENSUPAG00010007445) #23	GLMN (ENSUPAG00010007467) #24	C1orf146 (ENSUPAG00010007546) #25	BTBD8 (ENSUPAG00010007564) #26	EPHX4 (ENSUPAG00010007597) #27	ENSUPAG00010007607 #28	ENSUPAG00010007618	ENSUPAG00010007622 #28	TGFBR3 (ENSUPAG00010007630) #29	CDC7 (ENSUPAG00010007656) #30	HFM1 (ENSUPAG00010007727) #31
Eurasian red squirrel	MODERN SPECIES		GCLM (ENSSVLG00005000523) #10	DNTTIP2 (ENSSVLG00005000490) #11	BCAR3 (ENSSVLG00005000445) #12	ENSSVLG00005000405	FNBP1L (ENSSVLG00005000352) #13	DR1 (ENSSVLG00005000282) #15	CCDC18 (ENSSVLG00005000256) #16	TMED5 (ENSSVLG00005000211) #17	ENSSVLG00005000190	MTF2 (ENSSVLG00005000167) #18	ENSSVLG00005000125	ENSSVLG00005000089	DIPK1A (ENSSVLG00005004374) #19	ENSSVLG00005004298 #20	EVI5 (ENSSVLG00005004175) #21	GFI1 (ENSSVLG00005004132) #22	ENSSVLG00005004104	RPAP2 (ENSSVLG00005004082) #23	GLMN (ENSSVLG00005004063) #24	C1orf146 (ENSSVLG00005004047) #25	BTBD8 (ENSSVLG00005003975) #26	EPHX4 (ENSSVLG00005003946) #27	BRDT (ENSSVLG00005003821) #28	TGFBR3 (ENSSVLG00005003738) #29	CDC7 (ENSSVLG00005003704) #30	ENSSVLG00005003691	ENSSVLG00005003666 #31	ENSSVLG00005003646	ZNF644 (ENSSVLG00005003587) #32	BARHL2 (ENSSVLG00005003545) #33	ZNF326 (ENSSVLG00005003520)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Eulipotyphla	ANCESTRAL SPECIES	1425															ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22
Common shrew	MODERN SPECIES	4249															EVI5 (ENSSARG00000010787) #21	ENSSARG00000010760 #22
Hedgehog	MODERN SPECIES	14804																GFI1 (ENSEEUG00000000198) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Suina	ANCESTRAL SPECIES	32	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.c #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Pig	MODERN SPECIES	12	F3 (ENSSSCG00000022447)	ABCD3 (ENSSSCG00000028620) #7	ARHGAP29 (ENSSSCG00000006889) #8	ABCA4 (ENSSSCG00000006890) #9	GCLM (ENSSSCG00000037549) #10	DNTTIP2 (ENSSSCG00000006892) #11	BCAR3 (ENSSSCG00000006893) #12	FNBP1L (ENSSSCG00000006894) #13	DR1 (ENSSSCG00000028310) #15	CCDC18 (ENSSSCG00000006897) #16	TMED5 (ENSSSCG00000040439) #17	MTF2 (ENSSSCG00000006898) #18	DIPK1A (ENSSSCG00000006900) #19	RPL5 (ENSSSCG00000006899) #20	EVI5 (ENSSSCG00000006901) #21	GFI1 (ENSSSCG00000006902) #22	RPAP2 (ENSSSCG00000006903) #23	ENSSSCG00000057775	GLMN (ENSSSCG00000006904) #24	C1orf146 (ENSSSCG00000042806) #25	BTBD8 (ENSSSCG00000035196) #26	ENSSSCG00000056240	EPHX4 (ENSSSCG00000032057) #27	BRDT (ENSSSCG00000023654) #28	ENSSSCG00000060249	TGFBR3 (ENSSSCG00000006911) #29	CDC7 (ENSSSCG00000027251) #30	HFM1 (ENSSSCG00000006912) #31	ZNF644 (ENSSSCG00000022534) #32	BARHL2 (ENSSSCG00000006914) #33	ZNF326 (ENSSSCG00000038253)
Chacoan peccary	MODERN SPECIES	216	ABCD3 (ENSCWAG00000008698) #7	ARHGAP29 (ENSCWAG00000008826) #8	ABCA4 (ENSCWAG00000008954) #9	GCLM (ENSCWAG00000010130) #10	DNTTIP2 (ENSCWAG00000010220) #11	BCAR3 (ENSCWAG00000010282) #12	ENSCWAG00000010352	FNBP1L (ENSCWAG00000010376) #13	DR1 (ENSCWAG00000010484) #15	CCDC18 (ENSCWAG00000010526) #16	TMED5 (ENSCWAG00000010568) #17	MTF2 (ENSCWAG00000010620) #18	DIPK1A (ENSCWAG00000010717) #19	ENSCWAG00000010805 #20	EVI5 (ENSCWAG00000010914) #21	GFI1 (ENSCWAG00000011229) #22	RPAP2 (ENSCWAG00000011301) #23	GLMN (ENSCWAG00000011447) #24	C1orf146 (ENSCWAG00000011626) #25	BTBD8 (ENSCWAG00000011706) #26	ENSCWAG00000012040	EPHX4 (ENSCWAG00000012061) #27	BRDT (ENSCWAG00000012178) #28	TGFBR3 (ENSCWAG00000012734) #29	CDC7 (ENSCWAG00000012921) #30	HFM1 (ENSCWAG00000013030) #31	ZNF644 (ENSCWAG00000013112) #32	BARHL2 (ENSCWAG00000013191) #33	ZNF326 (ENSCWAG00000013237)	LRRC8D (ENSCWAG00000013283)	LRRC8C (ENSCWAG00000013294)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Camelidae	ANCESTRAL SPECIES	29	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Arabian camel	MODERN SPECIES	35	ENSCDRG00005001902 #8	ENSCDRG00005001919 #8	ABCA4 (ENSCDRG00005001970) #9	GCLM (ENSCDRG00005002067) #10	DNTTIP2 (ENSCDRG00005002089) #11	BCAR3 (ENSCDRG00005002103) #12	FNBP1L (ENSCDRG00005002139) #13	DR1 (ENSCDRG00005002183) #15	CCDC18 (ENSCDRG00005002211) #16	TMED5 (ENSCDRG00005002264) #17	ENSCDRG00005002283	MTF2 (ENSCDRG00005002314) #18	DIPK1A (ENSCDRG00005002361) #19	ENSCDRG00005002404 #20	EVI5 (ENSCDRG00005002514) #21	GFI1 (ENSCDRG00005002667) #22	RPAP2 (ENSCDRG00005002720) #23	GLMN (ENSCDRG00005002771) #24	C1orf146 (ENSCDRG00005002798) #25	BTBD8 (ENSCDRG00005002823) #26	ENSCDRG00005002875	EPHX4 (ENSCDRG00005002901) #27	BRDT (ENSCDRG00005002936) #28	TGFBR3 (ENSCDRG00005002972) #29	CDC7 (ENSCDRG00005003004) #30	ENSCDRG00005003021 #31	ZNF644 (ENSCDRG00005003047) #32	BARHL2 (ENSCDRG00005003080) #33	ZNF326 (ENSCDRG00005003095)	LRRC8D (ENSCDRG00005003112)	LRRC8C (ENSCDRG00005003122)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Cetacea	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00390000003248.a.b.a.a	ENSGT00530000063777.b
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00390000003248.a.b.a.a	ENSGT00530000063777.b
Sperm whale	MODERN SPECIES	15	F3 (ENSPCTG00005002402)	ABCD3 (ENSPCTG00005002427) #7	ARHGAP29 (ENSPCTG00005002478) #8	ABCA4 (ENSPCTG00005002692) #9	ENSPCTG00005002771	GCLM (ENSPCTG00005002786) #10	DNTTIP2 (ENSPCTG00005002811) #11	FNBP1L (ENSPCTG00005002834) #13	DR1 (ENSPCTG00005002905) #15	CCDC18 (ENSPCTG00005002918) #16	TMED5 (ENSPCTG00005002942) #17	MTF2 (ENSPCTG00005002966) #18	DIPK1A (ENSPCTG00005003008) #19	ENSPCTG00005003033 #20	EVI5 (ENSPCTG00005003071) #21	GFI1 (ENSPCTG00005003172) #22	RPAP2 (ENSPCTG00005003192) #23	GLMN (ENSPCTG00005003228) #24	C1orf146 (ENSPCTG00005003267) #25	BTBD8 (ENSPCTG00005003293) #26	ENSPCTG00005003303	EPHX4 (ENSPCTG00005003314) #27	BRDT (ENSPCTG00005003337) #28	TGFBR3 (ENSPCTG00005003508) #29	CDC7 (ENSPCTG00005003524) #30	HFM1 (ENSPCTG00005003555) #31	ZNF644 (ENSPCTG00005003632) #32	BARHL2 (ENSPCTG00005003661) #33	ENSPCTG00005003669	ENSPCTG00005003676	ZNF326 (ENSPCTG00005003683)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00390000003248.a.b.a.a	ENSGT00530000063777.b	ENSGT00940000154043.B
Dolphin	MODERN SPECIES	1397															EVI5 (ENSTTRG00000000083) #21	GFI1 (ENSTTRG00000000082) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00390000018316.b.b.g.a	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.b	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00390000003248.a.b.a.a	ENSGT00530000063777.b	ENSGT00390000013777.h
Vaquita	MODERN SPECIES		ENSPSNG00000018194	ARHGAP29 (ENSPSNG00000018131) #8	ENSPSNG00000018081 #9	ENSPSNG00000018004 #9	GCLM (ENSPSNG00000017882) #10	DNTTIP2 (ENSPSNG00000017832) #11	BCAR3 (ENSPSNG00000017672) #12	FNBP1L (ENSPSNG00000017530) #13	DR1 (ENSPSNG00000017453) #15	CCDC18 (ENSPSNG00000017224) #16	TMED5 (ENSPSNG00000017114) #17	MTF2 (ENSPSNG00000017009) #18	DIPK1A (ENSPSNG00000016854) #19	ENSPSNG00000016777 #20	EVI5 (ENSPSNG00000016298) #21	GFI1 (ENSPSNG00000016161) #22	RPAP2 (ENSPSNG00000015762) #23	GLMN (ENSPSNG00000015403) #24	C1orf146 (ENSPSNG00000015256) #25	BTBD8 (ENSPSNG00000015141) #26	EPHX4 (ENSPSNG00000015040) #27	BRDT (ENSPSNG00000014323) #28	ENSPSNG00000014214	TGFBR3 (ENSPSNG00000014107) #29	CDC7 (ENSPSNG00000014009) #30	HFM1 (ENSPSNG00000013912) #31	ENSPSNG00000013866	ZNF644 (ENSPSNG00000013726) #32	BARHL2 (ENSPSNG00000013638) #33	ZNF326 (ENSPSNG00000013530)	ENSPSNG00000013412
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00390000018316.b.b.g.a	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.b	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00390000003248.a.b.a.a	ENSGT00530000063777.b	ENSGT00390000013777.h
Beluga whale	MODERN SPECIES	74	ABCD3 (ENSDLEG00000012078) #7	ENSDLEG00000012053	ARHGAP29 (ENSDLEG00000012019) #8	ABCA4 (ENSDLEG00000011575) #9	GCLM (ENSDLEG00000011520) #10	DNTTIP2 (ENSDLEG00000018555) #11	BCAR3 (ENSDLEG00000018515) #12	FNBP1L (ENSDLEG00000018478) #13	DR1 (ENSDLEG00000018468) #15	CCDC18 (ENSDLEG00000018447) #16	TMED5 (ENSDLEG00000018438) #17	MTF2 (ENSDLEG00000018421) #18	FAM69A (ENSDLEG00000018413) #19	ENSDLEG00000018375 ##20	EVI5 (ENSDLEG00000018305) #21	GFI1 (ENSDLEG00000018240) #22	ENSDLEG00000018217	RPAP2 (ENSDLEG00000018190) #23	GLMN (ENSDLEG00000018169) #24	C1orf146 (ENSDLEG00000018154) #25	ENSDLEG00000018141	KIAA1107 (ENSDLEG00000018111) #26	EPHX4 (ENSDLEG00000018093) #27	BRDT (ENSDLEG00000018018) #28	TGFBR3 (ENSDLEG00000017988) #29	CDC7 (ENSDLEG00000017951) #30	ENSDLEG00000017907 #31	ZNF644 (ENSDLEG00000017868) #32	BARHL2 (ENSDLEG00000017855) #33	ENSDLEG00000017849	ZNF326 (ENSDLEG00000017672)
Narwhal	MODERN SPECIES	304	ABCD3 (ENSMMNG00015008194) #7	ENSMMNG00015008219	ARHGAP29 (ENSMMNG00015008231) #8	ABCA4 (ENSMMNG00015008302) #9	GCLM (ENSMMNG00015008377) #10	DNTTIP2 (ENSMMNG00015008396) #11	BCAR3 (ENSMMNG00015008436) #12	FNBP1L (ENSMMNG00015008478) #13	DR1 (ENSMMNG00015008503) #15	CCDC18 (ENSMMNG00015008563) #16	TMED5 (ENSMMNG00015008669) #17	MTF2 (ENSMMNG00015008697) #18	DIPK1A (ENSMMNG00015008730) #19	ENSMMNG00015008749 #20	EVI5 (ENSMMNG00015008827) #21	GFI1 (ENSMMNG00015008938) #22	RPAP2 (ENSMMNG00015008968) #23	GLMN (ENSMMNG00015009009) #24	C1orf146 (ENSMMNG00015009036) #25	BTBD8 (ENSMMNG00015009056) #26	EPHX4 (ENSMMNG00015009069) #27	BRDT (ENSMMNG00015009098) #28	ENSMMNG00015009182	TGFBR3 (ENSMMNG00015009196) #29	CDC7 (ENSMMNG00015009219) #30	HFM1 (ENSMMNG00015009250) #31	ZNF644 (ENSMMNG00015009277) #32	BARHL2 (ENSMMNG00015009287) #33	ENSMMNG00015009291	ZNF326 (ENSMMNG00015005692)	ENSMMNG00015005729
Blue whale	MODERN SPECIES		ABCD3 (ENSBMSG00010001367) #7	ARHGAP29 (ENSBMSG00010001329) #8	ABCA4 (ENSBMSG00010001205) #9	GCLM (ENSBMSG00010001139) #10	DNTTIP2 (ENSBMSG00010001101) #11	BCAR3 (ENSBMSG00010001032) #12	FNBP1L (ENSBMSG00010000979) #13	ENSBMSG00010000952	DR1 (ENSBMSG00010000938) #15	CCDC18 (ENSBMSG00010000915) #16	TMED5 (ENSBMSG00010000894) #17	MTF2 (ENSBMSG00010000876) #18	DIPK1A (ENSBMSG00010000829) #19	ENSBMSG00010000785 #20	EVI5 (ENSBMSG00010000675) #21	GFI1 (ENSBMSG00010000632) #22	ENSBMSG00010000612 #23	GLMN (ENSBMSG00010000586) #24	C1orf146 (ENSBMSG00010000562) #25	BTBD8 (ENSBMSG00010000521) #26	ENSBMSG00010000502	EPHX4 (ENSBMSG00010000481) #27	BRDT (ENSBMSG00010000373) #28	TGFBR3 (ENSBMSG00010000292) #29	CDC7 (ENSBMSG00010000261) #30	HFM1 (ENSBMSG00010000076) #31	ENSBMSG00010000017	BARHL2 (ENSBMSG00010000010) #33	ENSBMSG00010012272	ZNF326 (ENSBMSG00010012246)	LRRC8D (ENSBMSG00010012225)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.i #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Bos	ANCESTRAL SPECIES		ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT01100000263480.a.a.a.b.a.b.b.b	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.i #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Bos_a	ANCESTRAL SPECIES	1	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT01100000263480.a.a.a.b.a.b.b.b	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.i #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a
Wild yak	MODERN SPECIES	674			ABCA4 (ENSBMUG00000015263) #9	ENSBMUG00000015232	GCLM (ENSBMUG00000015219) #10	DNTTIP2 (ENSBMUG00000015209) #11	BCAR3 (ENSBMUG00000015164) #12	FNBP1L (ENSBMUG00000015086) #13	DR1 (ENSBMUG00000015044) #15	CCDC18 (ENSBMUG00000014997) #16	TMED5 (ENSBMUG00000014940) #17	MTF2 (ENSBMUG00000014917) #18	DIPK1A (ENSBMUG00000014855) #19	ENSBMUG00000014768 #20	EVI5 (ENSBMUG00000014711) #21	ENSBMUG00000014615 #22	RPAP2 (ENSBMUG00000014599) #23	GLMN (ENSBMUG00000014564) #24	C1orf146 (ENSBMUG00000014519) #25	BTBD8 (ENSBMUG00000014486) #26	ENSBMUG00000014448	EPHX4 (ENSBMUG00000014425) #27	BRDT (ENSBMUG00000014377) #28	TGFBR3 (ENSBMUG00000014269) #29	CDC7 (ENSBMUG00000014193) #30	ENSBMUG00000014152
Domestic yak	MODERN SPECIES	22	GCLM (ENSBGRG00000000503) #10	DNTTIP2 (ENSBGRG00000000534) #11	ENSBGRG00000000572	BCAR3 (ENSBGRG00000000591) #12	FNBP1L (ENSBGRG00000000657) #13	DR1 (ENSBGRG00000000843) #15	ENSBGRG00000000851	CCDC18 (ENSBGRG00000000861) #16	ENSBGRG00000000890	TMED5 (ENSBGRG00000000898) #17	MTF2 (ENSBGRG00000000957) #18	DIPK1A (ENSBGRG00000001056) #19	ENSBGRG00000001137 #20	EVI5 (ENSBGRG00000001254) #21	ENSBGRG00000001368	GFI1 (ENSBGRG00000001385) #22	RPAP2 (ENSBGRG00000001422) #23	GLMN (ENSBGRG00000001614) #24	C1orf146 (ENSBGRG00000001658) #25	BTBD8 (ENSBGRG00000001711) #26	ENSBGRG00000001849	EPHX4 (ENSBGRG00000001865) #27	BRDT (ENSBGRG00000001903) #28	TGFBR3 (ENSBGRG00000001978) #29	CDC7 (ENSBGRG00000002071) #30	HFM1 (ENSBGRG00000002085) #31	ENSBGRG00000002183	ENSBGRG00000002204	BARHL2 (ENSBGRG00000002268) #33	ZNF326 (ENSBGRG00000002303)	LRRC8D (ENSBGRG00000002454)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.b.a.b.a	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT01100000263480.a.a.a.b.a.b.b.b	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285.i #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000157730	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.b.b.b.b.a.b.a.b.a.a
Hybrid Bos Indicus	MODERN SPECIES	22	ABCA4 (ENSBIXG00005008650) #9	GCLM (ENSBIXG00005008584) #10	DNTTIP2 (ENSBIXG00005008558) #11	BCAR3 (ENSBIXG00005008526) #12	FNBP1L (ENSBIXG00005008457) #13	DR1 (ENSBIXG00005008340) #15	ENSBIXG00005008323	ENSBIXG00005000148	CCDC18 (ENSBIXG00005008266) #16	TMED5 (ENSBIXG00005008194) #17	MTF2 (ENSBIXG00005008140) #18	DIPK1A (ENSBIXG00005008068) #19	ENSBIXG00005008044 #20	EVI5 (ENSBIXG00005007958) #21	ENSBIXG00005007878	GFI1 (ENSBIXG00005000021) #22	RPAP2 (ENSBIXG00005029317) #23	GLMN (ENSBIXG00005029411) #24	ENSBIXG00005029439 #25	BTBD8 (ENSBIXG00005029487) #26	ENSBIXG00005029549	ENSBIXG00005029558	ENSBIXG00005029565	EPHX4 (ENSBIXG00005029573) #27	BRDT (ENSBIXG00005029609) #28	TGFBR3 (ENSBIXG00005029750) #29	CDC7 (ENSBIXG00005029834) #30	HFM1 (ENSBIXG00005029863) #31	ENSBIXG00005029872	ZNF644 (ENSBIXG00005029898) #32	BARHL2 (ENSBIXG00005029939) #33
Cow	MODERN SPECIES	22	ABCD3 (ENSBTAG00000009698) #7	ARHGAP29 (ENSBTAG00000004190) #8	ABCA4 (ENSBTAG00000018010) #9	GCLM (ENSBTAG00000007842) #10	DNTTIP2 (ENSBTAG00000047679) #11	BCAR3 (ENSBTAG00000003245) #12	FNBP1L (ENSBTAG00000004383) #13	DR1 (ENSBTAG00000008737) #15	CCDC18 (ENSBTAG00000027321) #16	TMED5 (ENSBTAG00000020180) #17	MTF2 (ENSBTAG00000001393) #18	DIPK1A (ENSBTAG00000002028) #19	RPL5 (ENSBTAG00000002026) ##20	EVI5 (ENSBTAG00000011363) #21	ENSBTAG00000055274	GFI1 (ENSBTAG00000016723) #22	RPAP2 (ENSBTAG00000018739) #23	GLMN (ENSBTAG00000018737) #24	C3H1orf146 (ENSBTAG00000027936) #25	BTBD8 (ENSBTAG00000006167) #26	ENSBTAG00000040248	EPHX4 (ENSBTAG00000005805) #27	BRDT (ENSBTAG00000003724) #28	ENSBTAG00000054884	ENSBTAG00000047443 #28	TGFBR3 (ENSBTAG00000024269) #29	CDC7 (ENSBTAG00000016307) #30	HFM1 (ENSBTAG00000020856) #31	ENSBTAG00000054082	ENSBTAG00000046077	ZNF644 (ENSBTAG00000011200) #32
American bison	MODERN SPECIES	3325	F3 (ENSBBBG00000005677)	ABCD3 (ENSBBBG00000021258) #7	ARHGAP29 (ENSBBBG00000005692) #8	ABCA4 (ENSBBBG00000021372) #9	GCLM (ENSBBBG00000021400) #10	DNTTIP2 (ENSBBBG00000021419) #11	BCAR3 (ENSBBBG00000021483) #12	FNBP1L (ENSBBBG00000021576) #13	DR1 (ENSBBBG00000005742) #15	CCDC18 (ENSBBBG00000021695) #16	TMED5 (ENSBBBG00000021744) #17	MTF2 (ENSBBBG00000021850) #18	DIPK1A (ENSBBBG00000005789) #19	ENSBBBG00000021904 #20	EVI5 (ENSBBBG00000021976) #21	ENSBBBG00000021986 #22	RPAP2 (ENSBBBG00000022008) #23	GLMN (ENSBBBG00000022033) #24	C1orf146 (ENSBBBG00000007682) #25	BTBD8 (ENSBBBG00000022104) #26	ENSBBBG00000022114	EPHX4 (ENSBBBG00000005841) #27	BRDT (ENSBBBG00000007333) #28	TGFBR3 (ENSBBBG00000022326) #29	CDC7 (ENSBBBG00000008125) #30	ENSBBBG00000022354	HFM1 (ENSBBBG00000022392) #31	ZNF644 (ENSBBBG00000005923) #32	BARHL2 (ENSBBBG00000022453) #33	ZNF326 (ENSBBBG00000022489)	LRRC8D (ENSBBBG00000007691)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00940000157730.h	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b
Goat	MODERN SPECIES	22	F3 (ENSCHIG00000019946)	ABCD3 (ENSCHIG00000023422) #7	ARHGAP29 (ENSCHIG00000011428) #8	ABCA4 (ENSCHIG00000021104) #9	GCLM (ENSCHIG00000025257) #10	DNTTIP2 (ENSCHIG00000009770) #11	BCAR3 (ENSCHIG00000002020) #12	FNBP1L (ENSCHIG00000014859) #13	DR1 (ENSCHIG00000020958) #15	CCDC18 (ENSCHIG00000008731) #16	TMED5 (ENSCHIG00000016065) #17	MTF2 (ENSCHIG00000024099) #18	DIPK1A (ENSCHIG00000020350) #19	ENSCHIG00000015380 #20	EVI5 (ENSCHIG00000026426) #21	GFI1 (ENSCHIG00000016135) #22	RPAP2 (ENSCHIG00000019522) #23	GLMN (ENSCHIG00000023340) #24	C1orf146 (ENSCHIG00000008745) #25	BTBD8 (ENSCHIG00000015692) #26	ENSCHIG00000022105	ENSCHIG00000009487	EPHX4 (ENSCHIG00000017302) #27	BRDT (ENSCHIG00000020014) #28	TGFBR3 (ENSCHIG00000015521) #29	CDC7 (ENSCHIG00000026844) #30	ENSCHIG00000019124	ENSCHIG00000009537	ENSCHIG00000019689	ENSCHIG00000018623 #31	ENSCHIG00000025906
Siberian musk deer	MODERN SPECIES	338	ENSMMSG00000018668	ARHGAP29 (ENSMMSG00000018746) #8	ABCA4 (ENSMMSG00000018854) #9	GCLM (ENSMMSG00000019242) #10	DNTTIP2 (ENSMMSG00000019293) #11	BCAR3 (ENSMMSG00000019338) #12	FNBP1L (ENSMMSG00000019419) #13	ENSMMSG00000019529 #15	CCDC18 (ENSMMSG00000019556) #16	TMED5 (ENSMMSG00000019579) #17	ENSMMSG00000019634 #18	DIPK1A (ENSMMSG00000019720) #19	ENSMMSG00000019811 #20	EVI5 (ENSMMSG00000019942) #21	ENSMMSG00000020392	GFI1 (ENSMMSG00000020411) #22	RPAP2 (ENSMMSG00000020475) #23	ENSMMSG00000020662 #24	C1orf146 (ENSMMSG00000020758) #25	BTBD8 (ENSMMSG00000020783) #26
Yarkand deer	MODERN SPECIES	12	ABCA4 (ENSCHYG00000019784) #9	GCLM (ENSCHYG00000020259) #10	DNTTIP2 (ENSCHYG00000020405) #11	ENSCHYG00000020582	BCAR3 (ENSCHYG00000020643) #12	FNBP1L (ENSCHYG00000021185) #13	DR1 (ENSCHYG00000021416) #15	CCDC18 (ENSCHYG00000021482) #16	ENSCHYG00000021781	TMED5 (ENSCHYG00000021812) #17	MTF2 (ENSCHYG00000021903) #18	DIPK1A (ENSCHYG00000022129) #19	ENSCHYG00000022310	ENSCHYG00000022335 #20	EVI5 (ENSCHYG00000022480) #21	GFI1 (ENSCHYG00000022804) #22	ENSCHYG00000022847	RPAP2 (ENSCHYG00000022870) #23	GLMN (ENSCHYG00000023014) #24	C1orf146 (ENSCHYG00000023053) #25	BTBD8 (ENSCHYG00000023115) #26	ENSCHYG00000023182	EPHX4 (ENSCHYG00000023191) #27	BRDT (ENSCHYG00000023233) #28	TGFBR3 (ENSCHYG00000023491) #29	CDC7 (ENSCHYG00000023558) #30	HFM1 (ENSCHYG00000023707) #31	ENSCHYG00000013515	ENSCHYG00000013541	ZNF644 (ENSCHYG00000013590) #32	BARHL2 (ENSCHYG00000013736) #33
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Greater horseshoe bat	MODERN SPECIES	27	ABCD3 (ENSRFEG00010010082) #7	ENSRFEG00010010026	ARHGAP29 (ENSRFEG00010009985) #8	ABCA4 (ENSRFEG00010009317) #9	GCLM (ENSRFEG00010009208) #10	DNTTIP2 (ENSRFEG00010009153) #11	BCAR3 (ENSRFEG00010009045) #12	FNBP1L (ENSRFEG00010008377) #13	DR1 (ENSRFEG00010008311) #15	CCDC18 (ENSRFEG00010007835) #16	TMED5 (ENSRFEG00010007758) #17	MTF2 (ENSRFEG00010007651) #18	DIPK1A (ENSRFEG00010007529) #19	ENSRFEG00010007432 #20	EVI5 (ENSRFEG00010007148) #21	GFI1 (ENSRFEG00010007082) #22	RPAP2 (ENSRFEG00010007051) #23	GLMN (ENSRFEG00010006990) #24	C1orf146 (ENSRFEG00010006926) #25	ENSRFEG00010006892	BTBD8 (ENSRFEG00010006736) #26	ENSRFEG00010013353	EPHX4 (ENSRFEG00010013304) #27	BRDT (ENSRFEG00010012762) #28	TGFBR3 (ENSRFEG00010012639) #29	CDC7 (ENSRFEG00010012591) #30	HFM1 (ENSRFEG00010012083) #31	ZNF644 (ENSRFEG00010011971) #32	BARHL2 (ENSRFEG00010011903) #33	ENSRFEG00010011853	LRRC8D (ENSRFEG00010011839)
Microbat	MODERN SPECIES	1047							BCAR3 (ENSMLUG00000001713) #12	FNBP1L (ENSMLUG00000000113) #13	DR1 (ENSMLUG00000010684) #15	CCDC18 (ENSMLUG00000005862) #16	TMED5 (ENSMLUG00000005855) #17	MTF2 (ENSMLUG00000005839) #18	DIPK1A (ENSMLUG00000008976) #19	ENSMLUG00000008956 #20	EVI5 (ENSMLUG00000015748) #21	GFI1 (ENSMLUG00000015191) #22	ENSMLUG00000001016 #23	GLMN (ENSMLUG00000016988) #24	C1orf146 (ENSMLUG00000016984) #25	BTBD8 (ENSMLUG00000002081) #26	ENSMLUG00000002075	ENSMLUG00000017219	EPHX4 (ENSMLUG00000028235) #27	ENSMLUG00000006232 #28	TGFBR3 (ENSMLUG00000010405) #29	CDC7 (ENSMLUG00000015065) #30	ENSMLUG00000023375	HFM1 (ENSMLUG00000010200) #31	ZNF644 (ENSMLUG00000010460) #32	BARHL2 (ENSMLUG00000015680) #33	ENSMLUG00000003609
Megabat	MODERN SPECIES	1753															EVI5 (ENSPVAG00000006932) #21	GFI1 (ENSPVAG00000006928) #22
Equus	ANCESTRAL SPECIES	3	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000154802.fb	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b.i #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Donkey	MODERN SPECIES	7	ARHGAP29 (ENSEASG00005015647) #8	ABCA4 (ENSEASG00005015609) #9	GCLM (ENSEASG00005015597) #10	DNTTIP2 (ENSEASG00005015594) #11	BCAR3 (ENSEASG00005015591) #12	FNBP1L (ENSEASG00005015587) #13	ENSEASG00005015589	DR1 (ENSEASG00005025520) #15	ENSEASG00005015583	CCDC18 (ENSEASG00005015570) #16	TMED5 (ENSEASG00005034283) #17	MTF2 (ENSEASG00005015530) #18	DIPK1A (ENSEASG00005030243) #19	ENSEASG00005015515 #20	EVI5 (ENSEASG00005015514) #21	GFI1 (ENSEASG00005015509) #22	RPAP2 (ENSEASG00005015507) #23	GLMN (ENSEASG00005015506) #24	C1orf146 (ENSEASG00005037463) #25	ENSEASG00005032361 #26	ENSEASG00005037362 #26	ENSEASG00005015501	ENSEASG00005015497	EPHX4 (ENSEASG00005015495) #27	BRDT (ENSEASG00005026111) #28	TGFBR3 (ENSEASG00005015486) #29	CDC7 (ENSEASG00005015434) #30	HFM1 (ENSEASG00005015424) #31	ZNF644 (ENSEASG00005015423) #32	BARHL2 (ENSEASG00005015421) #33	ZNF326 (ENSEASG00005015418)
Horse	MODERN SPECIES	26	DNTTIP2 (ENSECAG00000022045) #11	BCAR3 (ENSECAG00000022721) #12	FNBP1L (ENSECAG00000004536) #13	DR1 (ENSECAG00000010209) #15	ENSECAG00000031491	CCDC18 (ENSECAG00000014091) #16	ENSECAG00000046837	ENSECAG00000057950	TMED5 (ENSECAG00000016426) #17	MTF2 (ENSECAG00000017368) #18	ENSECAG00000051377	DIPK1A (ENSECAG00000020711) #19	RPL5 (ENSECAG00000021065) #20	EVI5 (ENSECAG00000023646) #21	ENSECAG00000058307	GFI1 (ENSECAG00000006647) #22	RPAP2 (ENSECAG00000007411) #23	GLMN (ENSECAG00000010564) #24	BTBD8 (ENSECAG00000014416) #26	ENSECAG00000015105	EPHX4 (ENSECAG00000015114) #27	ENSECAG00000052882	BRDT (ENSECAG00000015661) #28	ENSECAG00000053770 #29	TGFBR3 (ENSECAG00000019700) #29	CDC7 (ENSECAG00000022964) #30	HFM1 (ENSECAG00000024039) #31	ZNF644 (ENSECAG00000010304) #32	BARHL2 (ENSECAG00000010403) #33	ZNF326 (ENSECAG00000010425)	LRRC8D (ENSECAG00000006476)
Carnivora	ANCESTRAL SPECIES	1	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Caniformia	ANCESTRAL SPECIES	2	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Canidae	ANCESTRAL SPECIES	18	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.j #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00950000186426	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Red fox	MODERN SPECIES	21	F3 (ENSVVUG00000021851)	ABCD3 (ENSVVUG00000021847) #7	ARHGAP29 (ENSVVUG00000021844) #8	ABCA4 (ENSVVUG00000021843) #9	GCLM (ENSVVUG00000021841) #10	DNTTIP2 (ENSVVUG00000021840) #11	BCAR3 (ENSVVUG00000021837) #12	FNBP1L (ENSVVUG00000021266) #13	DR1 (ENSVVUG00000021225) #15	CCDC18 (ENSVVUG00000021186) #16	TMED5 (ENSVVUG00000021177) #17	MTF2 (ENSVVUG00000020888) #18	FAM69A (ENSVVUG00000020885) #19	ENSVVUG00000020882 #20	EVI5 (ENSVVUG00000020869) #21	ENSVVUG00000020858 #22	RPAP2 (ENSVVUG00000020839) #23	ENSVVUG00000020810 #24	C1orf146 (ENSVVUG00000020806) #25	KIAA1107 (ENSVVUG00000020801) #26	EPHX4 (ENSVVUG00000020796) #27	BRDT (ENSVVUG00000020791) #28	TGFBR3 (ENSVVUG00000020783) #29	CDC7 (ENSVVUG00000020767) #30	ENSVVUG00000020760 #31	ENSVVUG00000020751	ZNF644 (ENSVVUG00000020745) #32	BARHL2 (ENSVVUG00000020741) #33	ENSVVUG00000020740
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.j #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00950000186426	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT01040000240732
Dingo	MODERN SPECIES	172	F3 (ENSCAFG00020011846)	ABCD3 (ENSCAFG00020011849) #7	ARHGAP29 (ENSCAFG00020011859) #8	ABCA4 (ENSCAFG00020011889) #9	GCLM (ENSCAFG00020011914) #10	ENSCAFG00020011923 #11	BCAR3 (ENSCAFG00020011927) #12	FNBP1L (ENSCAFG00020011963) #13	DR1 (ENSCAFG00020012625) #15	CCDC18 (ENSCAFG00020012641) #16	TMED5 (ENSCAFG00020012713) #17	MTF2 (ENSCAFG00020012737) #18	DIPK1A (ENSCAFG00020013251) #19	ENSCAFG00020013253 #20	EVI5 (ENSCAFG00020013278) #21	GFI1 (ENSCAFG00020013371) #22	RPAP2 (ENSCAFG00020013392) #23	GLMN (ENSCAFG00020013400) #24	C1orf146 (ENSCAFG00020013473) #25	BTBD8 (ENSCAFG00020013485) #26	EPHX4 (ENSCAFG00020013502) #27	BRDT (ENSCAFG00020013520) #28	TGFBR3 (ENSCAFG00020013556) #29	CDC7 (ENSCAFG00020013566) #30	ENSCAFG00020013595 #31	ZNF644 (ENSCAFG00020013610) #32	BARHL2 (ENSCAFG00020013615) #33	ENSCAFG00020013616	ZNF326 (ENSCAFG00020013621)	ENSCAFG00020013628	LRRC8C (ENSCAFG00020013634)
Dog	MODERN SPECIES	34	F3 (ENSCAFG00845014757)	ABCD3 (ENSCAFG00845014838) #7	ARHGAP29 (ENSCAFG00845015082) #8	ABCA4 (ENSCAFG00845015579) #9	GCLM (ENSCAFG00845015741) #10	DNTTIP2 (ENSCAFG00845015837) #11	BCAR3 (ENSCAFG00845015973) #12	FNBP1L (ENSCAFG00845014505) #13	DR1 (ENSCAFG00845014570) #15	CCDC18 (ENSCAFG00845014633) #16	TMED5 (ENSCAFG00845014750) #17	MTF2 (ENSCAFG00845014796) #18	DIPK1A (ENSCAFG00845014860) #19	RPL5 (ENSCAFG00845014925) #20	EVI5 (ENSCAFG00845015142) #21	GFI1 (ENSCAFG00845015425) #22	RPAP2 (ENSCAFG00845015489) #23	GLMN (ENSCAFG00845015585) #24	C6H1orf146 (ENSCAFG00845015644) #25	KIAA1107 (ENSCAFG00845015712) #26	EPHX4 (ENSCAFG00845015813) #27	BRDT (ENSCAFG00845015912) #28	TGFBR3 (ENSCAFG00845016141) #29	CDC7 (ENSCAFG00845016428) #30	ENSCAFG00845016624 #31	ZNF644 (ENSCAFG00845016789) #32	BARHL2 (ENSCAFG00845017033) #33	ENSCAFG00845017080	ZNF326 (ENSCAFG00845017298)	LRRC8D (ENSCAFG00845017387)	ENSCAFG00845017447
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00950000183110.b.b #8	ENSGT00950000186000	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Mustelinae	ANCESTRAL SPECIES	60	ENSGT00950000183110.b.b #8	ENSGT00950000186000	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
American mink	MODERN SPECIES	52	ARHGAP29 (ENSNVIG00000018927) #8	ENSNVIG00000018922	ABCA4 (ENSNVIG00000018869) #9	GSH0 (ENSNVIG00000018834) #10	DNTTIP2 (ENSNVIG00000018818) #11	BCAR3 (ENSNVIG00000018770) #12	FNBP1L (ENSNVIG00000018663) #13	ENSNVIG00000018642	DR1 (ENSNVIG00000018633) #15	CCDC18 (ENSNVIG00000018584) #16	TMED5 (ENSNVIG00000018566) #17	MTF2 (ENSNVIG00000018537) #18	DIPK1A (ENSNVIG00000018515) #19	ENSNVIG00000018477 #20	EVI5 (ENSNVIG00000018444) #21	GFI1 (ENSNVIG00000018414) #22	RPAP2 (ENSNVIG00000018390) #23	GLMN (ENSNVIG00000018361) #24	C1orf146 (ENSNVIG00000018342) #25	BTBD8 (ENSNVIG00000018305) #26	EPHX4 (ENSNVIG00000018293) #27	ENSNVIG00000018269	BRDT (ENSNVIG00000018157) #28	TGFBR3 (ENSNVIG00000017998) #29	CDC7 (ENSNVIG00000017917) #30	HFM1 (ENSNVIG00000017830) #31	ZNF644 (ENSNVIG00000017765) #32	BARHL2 (ENSNVIG00000017755) #33	ZNF326 (ENSNVIG00000017707)	ENSNVIG00000017689	LRRC8D (ENSNVIG00000017678)
Ferret	MODERN SPECIES	197	DNTTIP2 (ENSMPUG00000004000) #11	ENSMPUG00000004007	BCAR3 (ENSMPUG00000004013) #12	FNBP1L (ENSMPUG00000004018) #13	DR1 (ENSMPUG00000004025) #15	ENSMPUG00000004035	CCDC18 (ENSMPUG00000004059) #16	TMED5 (ENSMPUG00000004079) #17	MTF2 (ENSMPUG00000004081) #18	ENSMPUG00000004091	DIPK1A (ENSMPUG00000004095) #19	ENSMPUG00000004102	ENSMPUG00000004150 #20	ENSMPUG00000004157 #21	ENSMPUG00000004168 #21	GFI1 (ENSMPUG00000004178) #22	RPAP2 (ENSMPUG00000004227) #23	GLMN (ENSMPUG00000004239) #24	C1orf146 (ENSMPUG00000004257) #25	BTBD8 (ENSMPUG00000004264) #26	EPHX4 (ENSMPUG00000004299) #27	BRDT (ENSMPUG00000004311) #28	TGFBR3 (ENSMPUG00000004481) #29	CDC7 (ENSMPUG00000004504) #30	HFM1 (ENSMPUG00000004594) #31	ZNF644 (ENSMPUG00000004615) #32	ENSMPUG00000004621	BARHL2 (ENSMPUG00000004626) #33	ZNF326 (ENSMPUG00000004655)	ENSMPUG00000004669	LRRC8D (ENSMPUG00000004706)
Ursidae	ANCESTRAL SPECIES	32	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00950000186000	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Giant Panda	MODERN SPECIES	11	ABCD3 (ENSAMEG00000009364) #7	ARHGAP29 (ENSAMEG00000009423) #8	ENSAMEG00000009510	ABCA4 (ENSAMEG00000009466) #9	GCLM (ENSAMEG00000009664) #10	DNTTIP2 (ENSAMEG00000009682) #11	BCAR3 (ENSAMEG00000009691) #12	FNBP1L (ENSAMEG00000009719) #13	DR1 (ENSAMEG00000009760) #15	CCDC18 (ENSAMEG00000009774) #16	TMED5 (ENSAMEG00000009807) #17	MTF2 (ENSAMEG00000009820) #18	DIPK1A (ENSAMEG00000009868) #19	RPL5 (ENSAMEG00000009878) ##20	EVI5 (ENSAMEG00000009896) #21	GFI1 (ENSAMEG00000031156) #22	RPAP2 (ENSAMEG00000013862) #23	ENSAMEG00000013877 #24	ENSAMEG00000013910 #25	ENSAMEG00000030276	ENSAMEG00000000576 #27	ENSAMEG00000004215	BRDT (ENSAMEG00000000536) #28	TGFBR3 (ENSAMEG00000000512) #29	CDC7 (ENSAMEG00000000492) #30	HFM1 (ENSAMEG00000000432) #31	ZNF644 (ENSAMEG00000008669) #32	BARHL2 (ENSAMEG00000029067) #33	ZNF326 (ENSAMEG00000000495)	LRRC8D (ENSAMEG00000019318)	LRRC8C (ENSAMEG00000000489)
Ursus	ANCESTRAL SPECIES	119	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00950000186000	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28
Polar bear	MODERN SPECIES	208	F3 (ENSUMAG00000008977)	ABCD3 (ENSUMAG00000009085) #7	ARHGAP29 (ENSUMAG00000009961) #8	ENSUMAG00000010069	ABCA4 (ENSUMAG00000010104) #9	GCLM (ENSUMAG00000010195) #10	DNTTIP2 (ENSUMAG00000010202) #11	BCAR3 (ENSUMAG00000010214) #12	FNBP1L (ENSUMAG00000010351) #13	CCDC18 (ENSUMAG00000011014) #16	TMED5 (ENSUMAG00000011101) #17	MTF2 (ENSUMAG00000011102) #18	DIPK1A (ENSUMAG00000011127) #19	ENSUMAG00000011129 #20	EVI5 (ENSUMAG00000011159) #21	ENSUMAG00000011251 #22	RPAP2 (ENSUMAG00000011257) #23	GLMN (ENSUMAG00000011266) #24	C1orf146 (ENSUMAG00000011273) #25	BTBD8 (ENSUMAG00000011276) #26	EPHX4 (ENSUMAG00000011286) #27	BRDT (ENSUMAG00000011290) #28
American black bear	MODERN SPECIES	2892															EVI5 (ENSUAMG00000021119) #21	GFI1 (ENSUAMG00000021124) #22
Felidae	ANCESTRAL SPECIES	10	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Cat	MODERN SPECIES	239	ABCD3 (ENSFCAG00000012766) #7	ARHGAP29 (ENSFCAG00000031621) #8	ABCA4 (ENSFCAG00000015512) #9	GCLM (ENSFCAG00000032882) #10	DNTTIP2 (ENSFCAG00000031703) #11	BCAR3 (ENSFCAG00000005535) #12	FNBP1L (ENSFCAG00000031485) #13	DR1 (ENSFCAG00000012458) #15	CCDC18 (ENSFCAG00000015028) #16	TMED5 (ENSFCAG00000031097) #17	MTF2 (ENSFCAG00000015025) #18	DIPK1A (ENSFCAG00000024680) #19	ENSFCAG00000037590 ##20	TCEB2 (ENSFCAG00000026327)	EVI5 (ENSFCAG00000005915) #21	GFI1 (ENSFCAG00000005914) #22	RPAP2 (ENSFCAG00000027703) #23	GLMN (ENSFCAG00000027386) #24	CC1H1orf146 (ENSFCAG00000000151) #25	BTBD8 (ENSFCAG00000027961) #26	EPHX4 (ENSFCAG00000001592) #27	BRDT (ENSFCAG00000024034) #28	TGFBR3 (ENSFCAG00000012148) #29	CDC7 (ENSFCAG00000029587) #30	HFM1 (ENSFCAG00000029116) #31	ZNF644 (ENSFCAG00000003115) #32	BARHL2 (ENSFCAG00000029532) #33	ENSFCAG00000029654	ZNF326 (ENSFCAG00000030586)	LRRC8D (ENSFCAG00000012994)	ENSFCAG00000037593
Panthera	ANCESTRAL SPECIES	4	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154259.l.q.b.a.a	ENSGT00940000154043.B
Tiger	MODERN SPECIES	19	F3 (ENSPTIG00000009684)	ABCD3 (ENSPTIG00000006742) #7	ARHGAP29 (ENSPTIG00000003366) #8	ABCA4 (ENSPTIG00000017238) #9	GCLM (ENSPTIG00000015360) #10	ENSPTIG00000014954 #11	BCAR3 (ENSPTIG00000007755) #12	FNBP1L (ENSPTIG00000019290) #13	DR1 (ENSPTIG00000018611) #15	CCDC18 (ENSPTIG00000014221) #16	TMED5 (ENSPTIG00000013456) #17	MTF2 (ENSPTIG00000010490) #18	DIPK1A (ENSPTIG00000008277) #19	ENSPTIG00000007991 #20	EVI5 (ENSPTIG00000005019) #21	ENSPTIG00000002680 #22	RPAP2 (ENSPTIG00000021761) #23	GLMN (ENSPTIG00000021463) #24	C1orf146 (ENSPTIG00000021257) #25	BTBD8 (ENSPTIG00000020578) #26	ENSPTIG00000020187	EPHX4 (ENSPTIG00000020004) #27	BRDT (ENSPTIG00000013997) #28	TGFBR3 (ENSPTIG00000007409) #29	CDC7 (ENSPTIG00000006650) #30
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822.h #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154259.l.q.b.a.a	ENSGT00940000154043.B
lion	MODERN SPECIES	8	ABCD3 (ENSPLOG00000005397) #7	ARHGAP29 (ENSPLOG00000005595) #8	ABCA4 (ENSPLOG00000005665) #9	GCLM (ENSPLOG00000005862) #10	DNTTIP2 (ENSPLOG00000005915) #11	BCAR3 (ENSPLOG00000005986) #12	FNBP1L (ENSPLOG00000006102) #13	DR1 (ENSPLOG00000006150) #15	CCDC18 (ENSPLOG00000006235) #16	TMED5 (ENSPLOG00000006419) #17	MTF2 (ENSPLOG00000006466) #18	DIPK1A (ENSPLOG00000006533) #19	ENSPLOG00000006609 #20	EVI5 (ENSPLOG00000006749) #21	ENSPLOG00000006956	GFI1 (ENSPLOG00000006985) #22	RPAP2 (ENSPLOG00000007033) #23	GLMN (ENSPLOG00000007089) #24	C1orf146 (ENSPLOG00000007222) #25	BTBD8 (ENSPLOG00000007272) #26	EPHX4 (ENSPLOG00000007315) #27	BRDT (ENSPLOG00000007354) #28	TGFBR3 (ENSPLOG00000007403) #29	CDC7 (ENSPLOG00000007437) #30	HFM1 (ENSPLOG00000007516) #31	ENSPLOG00000007644	ZNF644 (ENSPLOG00000007684) #32	BARHL2 (ENSPLOG00000007731) #33	ZNF326 (ENSPLOG00000007759)	ENSPLOG00000007799	LRRC8D (ENSPLOG00000007824)
leopard	MODERN SPECIES	216										CCDC18 (ENSPPRG00000003018) #16	TMED5 (ENSPPRG00000003695) #17	MTF2 (ENSPPRG00000005457) #18	DIPK1A (ENSPPRG00000006687) #19	ENSPPRG00000006790 #20	EVI5 (ENSPPRG00000007427) #21	GFI1 (ENSPPRG00000007521) #22	RPAP2 (ENSPPRG00000007827) #23	GLMN (ENSPPRG00000008045) #24	C1orf146 (ENSPPRG00000008133) #25
Atlantogenata	ANCESTRAL SPECIES	26	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00740000117159	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Afrotheria	ANCESTRAL SPECIES	112	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Afrotheria_a	ANCESTRAL SPECIES	114	ENSGT00390000012668	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.a.a.b #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00950000182892.a.b.a.b.a	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Elephant	MODERN SPECIES	473	F3 (ENSLAFG00000012412)	ABCD3 (ENSLAFG00000003729) #7	ARHGAP29 (ENSLAFG00000008218) #8	ABCA4 (ENSLAFG00000007408) #9	GCLM (ENSLAFG00000013541) #10	DNTTIP2 (ENSLAFG00000004636) #11	BCAR3 (ENSLAFG00000005936) #12	FNBP1L (ENSLAFG00000016688) #13	DR1 (ENSLAFG00000017540) #15	CCDC18 (ENSLAFG00000009687) #16	TMED5 (ENSLAFG00000009076) #17	MTF2 (ENSLAFG00000015037) #18	DIPK1A (ENSLAFG00000001048) #19	ENSLAFG00000011916 #20	EVI5 (ENSLAFG00000018348) #21	GFI1 (ENSLAFG00000018346) #22	RPAP2 (ENSLAFG00000007789) #23	GLMN (ENSLAFG00000007781) #24	BTBD8 (ENSLAFG00000028932) #26	ENSLAFG00000008859	ENSLAFG00000029279	EPHX4 (ENSLAFG00000008858) #27	ENSLAFG00000013971 #28	TGFBR3 (ENSLAFG00000010015) #29	ENSLAFG00000032517	ENSLAFG00000026439	ENSLAFG00000029473	CDC7 (ENSLAFG00000010296) #30	ENSLAFG00000026572	ENSLAFG00000015903 #31	ZNF644 (ENSLAFG00000002148) #32
Hyrax	MODERN SPECIES	4503																GFI1 (ENSPCAG00000011020) #22
Xenarthra	ANCESTRAL SPECIES	376													ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.c.b.a.a ##20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01010000226765	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29
Sloth	MODERN SPECIES	4875																GFI1 (ENSCHOG00000008112) #22
Armadillo	MODERN SPECIES	1282													DIPK1A (ENSDNOG00000006049) #19	ENSDNOG00000006251 ##20	EVI5 (ENSDNOG00000040115) #21	GFI1 (ENSDNOG00000000782) #22	RPAP2 (ENSDNOG00000017468) #23	GLMN (ENSDNOG00000017766) #24	C1orf146 (ENSDNOG00000003007) #25	BTBD8 (ENSDNOG00000041212) #26	ENSDNOG00000041274	EPHX4 (ENSDNOG00000013211) #27	BRDT (ENSDNOG00000013324) #28	TGFBR3 (ENSDNOG00000008351) #29
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000011838	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000161104	ENSGT00940000155124	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000011838	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.e	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000161104	ENSGT00940000155124	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Diprotodontia	ANCESTRAL SPECIES	50	ENSGT00390000011838	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.e	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000161104	ENSGT00940000155124	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000011838	ENSGT01050000244838.H.d	ENSGT00950000183104.A.a.a	ENSGT00940000161225	ENSGT00940000157693	ENSGT00510000048988	ENSGT00390000003015	ENSGT00620000088018.e	ENSGT00390000014984	ENSGT00390000006224	ENSGT00940000161104	ENSGT00940000155124	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01030000234574.A.b.a.b	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
koala	MODERN SPECIES	271	ENSPCIG00000030812	MED8 (ENSPCIG00000013588)	ELOVL1 (ENSPCIG00000013596)	ENSPCIG00000013600	TIE1 (ENSPCIG00000013610)	C1orf210 (ENSPCIG00000013623)	TMEM125 (ENSPCIG00000013625)	CFAP57 (ENSPCIG00000013628)	EBNA1BP2 (ENSPCIG00000013641)	ENSPCIG00000013642	ENSPCIG00000032163	ENSPCIG00000016260	DIPK1A (ENSPCIG00000013652) #19	RPL5 (ENSPCIG00000013655) #20	EVI5 (ENSPCIG00000013693) #21	GFI1 (ENSPCIG00000013728) #22	RPAP2 (ENSPCIG00000013740) #23	GLMN (ENSPCIG00000013755) #24	ENSPCIG00000005520 #25	BTBD8 (ENSPCIG00000009630) #26	ENSPCIG00000014192	EPHX4 (ENSPCIG00000014196) #27	BRDT (ENSPCIG00000014201) #28	TGFBR3 (ENSPCIG00000014213) #29	ENSPCIG00000014224	CDC7 (ENSPCIG00000014227) #30	HFM1 (ENSPCIG00000014233) #31	ZNF644 (ENSPCIG00000014242) #32
Common wonbat	MODERN SPECIES	1060	MED8 (ENSVURG00010019346)	ELOVL1 (ENSVURG00010019359)	CDC20 (ENSVURG00010019368)	ENSVURG00010019390	TIE1 (ENSVURG00010019513)	C1orf210 (ENSVURG00010000412)	TMEM125 (ENSVURG00010000423)	CFAP57 (ENSVURG00010000472)	EBNA1BP2 (ENSVURG00010000509)	ENSVURG00010000534	ENSVURG00010000559	ENSVURG00010000748	DIPK1A (ENSVURG00010000803) #19	ENSVURG00010000814 #20	EVI5 (ENSVURG00010000942) #21	GFI1 (ENSVURG00010001046) #22	RPAP2 (ENSVURG00010001077) #23	GLMN (ENSVURG00010001118) #24	ENSVURG00010001147 #25	BTBD8 (ENSVURG00010001173) #26	ENSVURG00010001198	EPHX4 (ENSVURG00010001217) #27	ENSVURG00010001242 #28	TGFBR3 (ENSVURG00010001277) #29	CDC7 (ENSVURG00010001369) #30	ENSVURG00010001419 #31	ZNF644 (ENSVURG00010001441) #32	BARHL2 (ENSVURG00010001472) #33	ENSVURG00010001498	ENSVURG00010001523	LRRC8D (ENSVURG00010001532)
Tasmanian devil	MODERN SPECIES	3	ELOVL1 (ENSSHAG00000001806)	CDC20 (ENSSHAG00000001965)	ENSSHAG00000002350	TIE1 (ENSSHAG00000005800)	C1orf210 (ENSSHAG00000005696)	TMEM125 (ENSSHAG00000020537)	CFAP57 (ENSSHAG00000004462)	EBNA1BP2 (ENSSHAG00000022274)	ENSSHAG00000004193	ENSSHAG00000003809	ENSSHAG00000029636	ENSSHAG00000020555	ENSSHAG00000028216 #19	ENSSHAG00000006417 #20	EVI5 (ENSSHAG00000007643) #21	GFI1 (ENSSHAG00000031078) #22	RPAP2 (ENSSHAG00000009884) #23	GLMN (ENSSHAG00000010432) #24	C1orf146 (ENSSHAG00000010746) #25	BTBD8 (ENSSHAG00000011152) #26	EPHX4 (ENSSHAG00000025522) #27	BRDT (ENSSHAG00000012183) #28	TGFBR3 (ENSSHAG00000012680) #29	CDC7 (ENSSHAG00000014369) #30	ENSSHAG00000014616 #31	ZNF644 (ENSSHAG00000015751) #32	BARHL2 (ENSSHAG00000031179) #33	ENSSHAG00000017816	ENSSHAG00000022788	LRRC8D (ENSSHAG00000018078)	LRRC8C (ENSSHAG00000018379)
Opossum	MODERN SPECIES	1	ENSMODG00000011310	ELOVL1 (ENSMODG00000011324)	CDC20 (ENSMODG00000036628)	TIE1 (ENSMODG00000011374)	ENSMODG00000038256	TMEM125 (ENSMODG00000025284)	CFAP57 (ENSMODG00000011400)	EBNA1BP2 (ENSMODG00000011412)	ENSMODG00000011415	ENSMODG00000011425	ENSMODG00000028863	ENSMODG00000025281	DIPK1A (ENSMODG00000011623) #19	RPL5 (ENSMODG00000011635) #20	EVI5 (ENSMODG00000011787) #21	GFI1 (ENSMODG00000011802) #22	RPAP2 (ENSMODG00000011812) #23	GLMN (ENSMODG00000011826) #24	C1orf146 (ENSMODG00000011828) #25	BTBD8 (ENSMODG00000011855) #26	ENSMODG00000011859	EPHX4 (ENSMODG00000038489) #27	BRDT (ENSMODG00000011893) #28	TGFBR3 (ENSMODG00000011996) #29	CDC7 (ENSMODG00000012035) #30	HFM1 (ENSMODG00000025264) #31	ZNF644 (ENSMODG00000012054) #32	BARHL2 (ENSMODG00000012056) #33	ZNF326 (ENSMODG00000012064)	LRRC8D (ENSMODG00000012073)	LRRC8C (ENSMODG00000012076)
Platypus	MODERN SPECIES	15	ABCD3 (ENSOANG00000011392) #7	ENSOANG00000003532 #8	ABCA4 (ENSOANG00000046377) #9	ENSOANG00000008840	GCLM (ENSOANG00000005984) #10	ENSOANG00000036621 #11	BCAR3 (ENSOANG00000032140) #12	FNBP1L (ENSOANG00000001948) #13	DR1 (ENSOANG00000043185) #15	CCDC18 (ENSOANG00000001148) #16	TMED5 (ENSOANG00000039591) #17	MTF2 (ENSOANG00000008849) #18	DIPK1A (ENSOANG00000037155) #19	RPL5 (ENSOANG00000004669) #20	EVI5 (ENSOANG00000001021) #21	ENSOANG00000038097 #22	RPAP2 (ENSOANG00000004403) #23	GLMN (ENSOANG00000013370) #24	BTBD8 (ENSOANG00000013372) #26	ENSOANG00000012481 #27	BRDT (ENSOANG00000000445) #28	TGFBR3 (ENSOANG00000046247) #29	CDC7 (ENSOANG00000014786) #30	HFM1 (ENSOANG00000004679) #31	ZNF644 (ENSOANG00000007039) #32	BARHL2 (ENSOANG00000009226) #33	ZNF326 (ENSOANG00000009225)	LRRC8D (ENSOANG00000015885)	LRRC8C (ENSOANG00000010843)	LRRC8B (ENSOANG00000007872)	ENSOANG00000007771
Sauria	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000162790.a	ENSGT00940000153385.b.a.b	ENSGT00940000161157	ENSGT00940000160381	ENSGT00980000198488.n	ENSGT01100000263475.d.a	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Archosauria	ANCESTRAL SPECIES	11	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Aves	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Neognathae	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Anatidae	ANCESTRAL SPECIES	5	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33
Pink-footed goose	MODERN SPECIES	78	ARHGAP29 (ENSABRG00000005649) #8	ABCA4 (ENSABRG00000006282) #9	ENSABRG00000014331	GCLM (ENSABRG00000014339) #10	ENSABRG00000014342 #11	BCAR3 (ENSABRG00000014355) #12	FNBP1L (ENSABRG00000014488) #13	DR1 (ENSABRG00000014802) #15	ENSABRG00000014805	CCDC18 (ENSABRG00000014813) #16	TMED5 (ENSABRG00000014825) #17	MTF2 (ENSABRG00000014841) #18	DIPK1A (ENSABRG00000014977) #19	RPL5 (ENSABRG00000014991) #20	EVI5 (ENSABRG00000015035) #21	GFI1 (ENSABRG00000015154) #22	RPAP2 (ENSABRG00000015178) #23	GLMN (ENSABRG00000015260) #24	C1orf146 (ENSABRG00000015364) #25	BTBD8 (ENSABRG00000015373) #26	EPHX4 (ENSABRG00000015398) #27	BRDT (ENSABRG00000015421) #28	TGFBR3 (ENSABRG00000015501) #29	CDC7 (ENSABRG00000015510) #30	ZNF644 (ENSABRG00000015527) #32	BARHL2 (ENSABRG00000015548) #33	ENSABRG00000015582
Duck	MODERN SPECIES	26	F3 (ENSAPLG00000026724)	ABCD3 (ENSAPLG00000009113) #7	ARHGAP29 (ENSAPLG00000008546) #8	ABCA4 (ENSAPLG00000007981) #9	ENSAPLG00000007564	ENSAPLG00000029990 #10	DNTTIP2 (ENSAPLG00000023175) #11	BCAR3 (ENSAPLG00000003983) #12	FNBP1L (ENSAPLG00000003118) #13	CCDC18 (ENSAPLG00000002499) #16	TMED5 (ENSAPLG00000026535) #17	MTF2 (ENSAPLG00000016259) #18	DIPK1A (ENSAPLG00000016170) #19	RPL5 (ENSAPLG00000015966) #20	EVI5 (ENSAPLG00000015768) #21	GFI1 (ENSAPLG00000015700) #22	RPAP2 (ENSAPLG00000015165) #23	ENSAPLG00000019989	C1orf146 (ENSAPLG00000014919) #25	GLMN (ENSAPLG00000014947) #24	BTBD8 (ENSAPLG00000014887) #26	EPHX4 (ENSAPLG00000014785) #27	BRDT (ENSAPLG00000014456) #28	TGFBR3 (ENSAPLG00000014247) #29	ENSAPLG00000023602 #30	HFM1 (ENSAPLG00000013639) #31	ZNF644 (ENSAPLG00000013510) #32	BARHL2 (ENSAPLG00000019725) #33
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b.e #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Japanese quail	MODERN SPECIES	26	ARHGAP29 (ENSCJPG00005004217) #8	ABCA4 (ENSCJPG00005004231) #9	ENSCJPG00005008143	GCLM (ENSCJPG00005008145) #10	DNTTIP2 (ENSCJPG00005008146) #11	BCAR3 (ENSCJPG00005008147) #12	FNBP1L (ENSCJPG00005008149) #13	DR1 (ENSCJPG00005008150) #15	ENSCJPG00005008151	CCDC18 (ENSCJPG00005008153) #16	TMED5 (ENSCJPG00005008154) #17	MTF2 (ENSCJPG00005008156) #18	DIPK1A (ENSCJPG00005008158) #19	RPL5 (ENSCJPG00005008159) #20	EVI5 (ENSCJPG00005008161) #21	GFI1 (ENSCJPG00005008162) #22	RPAP2 (ENSCJPG00005008163) #23	GLMN (ENSCJPG00005008167) #24	C1orf146 (ENSCJPG00005008197) #25	BTBD8 (ENSCJPG00005008198) #26	EPHX4 (ENSCJPG00005008202) #27	BRDT (ENSCJPG00005008203) #28	TGFBR3 (ENSCJPG00005008204) #29	CDC7 (ENSCJPG00005008208) #30	ENSCJPG00005008209 #31	ZNF644 (ENSCJPG00005008211) #32	BARHL2 (ENSCJPG00005008213) #33	ZNF326 (ENSCJPG00005008227)	LRRC8D (ENSCJPG00005008228)	LRRC8C (ENSCJPG00005008243)	LRRC8B (ENSCJPG00005008244)
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b.e #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Chicken	MODERN SPECIES	37	ARHGAP29 (ENSGALG00010021139) #8	ABCA4 (ENSGALG00010021143) #9	ENSGALG00010021171	GCLM (ENSGALG00010021195) #10	DNTTIP2 (ENSGALG00010024522) #11	BCAR3 (ENSGALG00010021242) #12	FNBP1L (ENSGALG00010021254) #13	DR1 (ENSGALG00010021701) #15	ENSGALG00010024530	CCDC18 (ENSGALG00010021705) #16	TMED5 (ENSGALG00010021728) #17	MTF2 (ENSGALG00010021753) #18	FAM69A (ENSGALG00010021768) #19	RPL5 (ENSGALG00010021788) #20	EVI5 (ENSGALG00010021817) #21	GFI1 (ENSGALG00010021864) #22	RPAP2 (ENSGALG00010021932) #23	GLMN (ENSGALG00010021980) #24	C1orf146 (ENSGALG00010022008) #25	BTBD8 (ENSGALG00010022019) #26	EPHX3 (ENSGALG00010022049) #27	BRDT (ENSGALG00010024538) #28	TGFBR3 (ENSGALG00010022082) #29	CDC7 (ENSGALG00010022098) #30	HFM1 (ENSGALG00010021683) #31	ZNF644 (ENSGALG00010022152) #32	BARHL2 (ENSGALG00010022163) #33	ZNF326 (ENSGALG00010022743)	LRRC8D (ENSGALG00010022815)	LRRC8C (ENSGALG00010022831)	LRRC8B (ENSGALG00010022731)
Turkey	MODERN SPECIES	1	ENSMGAG00000022822	ENSMGAG00000017621	ENSMGAG00000001831	ENSMGAG00000001920	ENSMGAG00000008450 #32	ENSMGAG00000008437 #31	ENSMGAG00000021815 #31	ENSMGAG00000008404 #30	ENSMGAG00000008367 #29	ENSMGAG00000008323 #28	ENSMGAG00000021646 #27	ENSMGAG00000008284 #26	ENSMGAG00000008244 #24	ENSMGAG00000008280 #25	RPAP2 (ENSMGAG00000008200) #23	ENSMGAG00000008187 #22	ENSMGAG00000018997 #21	ENSMGAG00000008130 #21	ENSMGAG00000008075 #19	ENSMGAG00000008090 #20	MTF2 (ENSMGAG00000008037) #18	ENSMGAG00000022542 #18	ENSMGAG00000008032 #17	ENSMGAG00000007990 #16	ENSMGAG00000007977	ENSMGAG00000018571 #15	ENSMGAG00000007893 #13	ENSMGAG00000007855 #12	ENSMGAG00000020782 #13	ENSMGAG00000007843 #11	ENSMGAG00000007822 #10
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Zebra finch	MODERN SPECIES	30	ABCD3 (ENSTGUG00000005659) #7	ARHGAP29 (ENSTGUG00000005720) #8	ABCA4 (ENSTGUG00000005732) #9	ENSTGUG00000005827	DNTTIP2 (ENSTGUG00000027648) #11	BCAR3 (ENSTGUG00000005886) #12	FNBP1L (ENSTGUG00000005901) #13	DR1 (ENSTGUG00000005923) #15	ENSTGUG00000005931	CCDC18 (ENSTGUG00000005935) #16	TMED5 (ENSTGUG00000025954) #17	MTF2 (ENSTGUG00000005964) #18	DIPK1A (ENSTGUG00000020034) #19	RPL5 (ENSTGUG00000005988) #20	EVI5 (ENSTGUG00000006013) #21	GFI1 (ENSTGUG00000006060) #22	RPAP2 (ENSTGUG00000006076) #23	GLMN (ENSTGUG00000006086) #24	C1orf146 (ENSTGUG00000023317) #25	BTBD8 (ENSTGUG00000006099) #26	EPHX4 (ENSTGUG00000006106) #27	BRDT (ENSTGUG00000006116) #28	TGFBR3 (ENSTGUG00000006121) #29	CDC7 (ENSTGUG00000006148) #30	HFM1 (ENSTGUG00000006172) #31	ZNF644 (ENSTGUG00000006188) #32	ENSTGUG00000024670	ENSTGUG00000019436	BARHL2 (ENSTGUG00000023723) #33	ZNF326 (ENSTGUG00000006205)	LRRC8D (ENSTGUG00000006223)
Common canary	MODERN SPECIES	9	ARHGAP29 (ENSSCAG00000012633) #8	ABCA4 (ENSSCAG00000012791) #9	ENSSCAG00000013484	GCLM (ENSSCAG00000013521) #10	DNTTIP2 (ENSSCAG00000013558) #11	BCAR3 (ENSSCAG00000013573) #12	FNBP1L (ENSSCAG00000013624) #13	DR1 (ENSSCAG00000013772) #15	ENSSCAG00000013776	CCDC18 (ENSSCAG00000013794) #16	TMED5 (ENSSCAG00000013827) #17	MTF2 (ENSSCAG00000013829) #18	DIPK1A (ENSSCAG00000013842) #19	RPL5 (ENSSCAG00000013846) #20	EVI5 (ENSSCAG00000013876) #21	GFI1 (ENSSCAG00000013900) #22	RPAP2 (ENSSCAG00000013912) #23	GLMN (ENSSCAG00000013928) #24	C1orf146 (ENSSCAG00000013954) #25	BTBD8 (ENSSCAG00000013966) #26	EPHX4 (ENSSCAG00000013982) #27	BRDT (ENSSCAG00000013987) #28	TGFBR3 (ENSSCAG00000013996) #29	CDC7 (ENSSCAG00000014003) #30	ZNF644 (ENSSCAG00000014013) #32	ZNF326 (ENSSCAG00000014025)	LRRC8D (ENSSCAG00000014031)	LRRC8C (ENSSCAG00000014033)	LRRC8B (ENSSCAG00000014035)	KYAT3 (ENSSCAG00000014042)	GTF2B (ENSSCAG00000014058)
Medium ground finch	MODERN SPECIES	39	ARHGAP29 (ENSGFOG00000007603) #8	ABCA4 (ENSGFOG00000007406) #9	ENSGFOG00000007374	GCLM (ENSGFOG00000007353) #10	DNTTIP2 (ENSGFOG00000007341) #11	BCAR3 (ENSGFOG00000007331) #12	FNBP1L (ENSGFOG00000007310) #13	DR1 (ENSGFOG00000007302) #15	ENSGFOG00000007293	CCDC18 (ENSGFOG00000007159) #16	TMED5 (ENSGFOG00000007135) #17	MTF2 (ENSGFOG00000006745) #18	DIPK1A (ENSGFOG00000006729) #19	RPL5 (ENSGFOG00000006719) #20	EVI5 (ENSGFOG00000006684) #21	GFI1 (ENSGFOG00000006672) #22	RPAP2 (ENSGFOG00000006667) #23	GLMN (ENSGFOG00000006663) #24	BTBD8 (ENSGFOG00000006642) #26	EPHX4 (ENSGFOG00000006189) #27	BRDT (ENSGFOG00000006178) #28	TGFBR3 (ENSGFOG00000006156) #29	CDC7 (ENSGFOG00000006138) #30	ZNF644 (ENSGFOG00000006132) #32	ZNF326 (ENSGFOG00000006128)	LRRC8D (ENSGFOG00000006126)	LRRC8C (ENSGFOG00000006124)	LRRC8B (ENSGFOG00000006122)	KYAT3 (ENSGFOG00000006116)	GTF2B (ENSGFOG00000006108)	PKN2 (ENSGFOG00000006089)
Flycatcher	MODERN SPECIES	27	ENSFALG00000002310 #9	ENSFALG00000002295	GCLM (ENSFALG00000025340) #10	DNTTIP2 (ENSFALG00000002291) #11	BCAR3 (ENSFALG00000002288) #12	FNBP1L (ENSFALG00000002287) #13	DR1 (ENSFALG00000023380) #15	ENSFALG00000001678	CCDC18 (ENSFALG00000001687) #16	TMED5 (ENSFALG00000024847) #17	MTF2 (ENSFALG00000025452) #18	DIPK1A (ENSFALG00000001706) #19	RPL5 (ENSFALG00000001722) #20	EVI5 (ENSFALG00000001737) #21	ENSFALG00000023238	GFI1 (ENSFALG00000001749) #22	RPAP2 (ENSFALG00000001750) #23	GLMN (ENSFALG00000001754) #24	C1orf146 (ENSFALG00000029039) #25	BTBD8 (ENSFALG00000001757) #26	EPHX4 (ENSFALG00000001761) #27	BRDT (ENSFALG00000001764) #28	TGFBR3 (ENSFALG00000001766) #29	CDC7 (ENSFALG00000001771) #30	HFM1 (ENSFALG00000001781) #31	ZNF644 (ENSFALG00000001799) #32	BARHL2 (ENSFALG00000001803) #33	ZNF326 (ENSFALG00000001671)	LRRC8D (ENSFALG00000014964)	LRRC8C (ENSFALG00000028640)	LRRC8B (ENSFALG00000001662)
Great tit	MODERN SPECIES	28	ARHGAP29 (ENSPMJG00000019362) #8	ABCA4 (ENSPMJG00000019363) #9	ENSPMJG00000019376	GCLM (ENSPMJG00000019377) #10	DNTTIP2 (ENSPMJG00000019378) #11	BCAR3 (ENSPMJG00000019380) #12	FNBP1L (ENSPMJG00000019381) #13	DR1 (ENSPMJG00000019382) #15	ENSPMJG00000019383	CCDC18 (ENSPMJG00000019384) #16	TMED5 (ENSPMJG00000019385) #17	MTF2 (ENSPMJG00000019386) #18	DIPK1A (ENSPMJG00000019388) #19	RPL5 (ENSPMJG00000019389) #20	EVI5 (ENSPMJG00000019391) #21	GFI1 (ENSPMJG00000019392) #22	RPAP2 (ENSPMJG00000019393) #23	GLMN (ENSPMJG00000019394) #24	C1orf146 (ENSPMJG00000019395) #25	BTBD8 (ENSPMJG00000019396) #26	EPHX4 (ENSPMJG00000019397) #27	BRDT (ENSPMJG00000019398) #28	TGFBR3 (ENSPMJG00000019399) #29	CDC7 (ENSPMJG00000019400) #30	ZNF644 (ENSPMJG00000019401) #32	BARHL2 (ENSPMJG00000019403) #33	ZNF326 (ENSPMJG00000019405)	LRRC8D (ENSPMJG00000019407)	LRRC8C (ENSPMJG00000019409)	LRRC8B (ENSPMJG00000019410)	KYAT3 (ENSPMJG00000019411)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Golden eagle	MODERN SPECIES	3	ARHGAP29 (ENSACCG00020000787) #8	ABCA4 (ENSACCG00020000968) #9	ENSACCG00020001044	GCLM (ENSACCG00020001064) #10	DNTTIP2 (ENSACCG00020001084) #11	BCAR3 (ENSACCG00020001116) #12	FNBP1L (ENSACCG00020001166) #13	DR1 (ENSACCG00020001197) #15	ENSACCG00020001211	CCDC18 (ENSACCG00020001301) #16	TMED5 (ENSACCG00020001365) #17	MTF2 (ENSACCG00020001382) #18	DIPK1A (ENSACCG00020001401) #19	RPL5 (ENSACCG00020001431) #20	EVI5 (ENSACCG00020001507) #21	GFI1 (ENSACCG00020001642) #22	RPAP2 (ENSACCG00020001674) #23	GLMN (ENSACCG00020001707) #24	C1orf146 (ENSACCG00020001734) #25	BTBD8 (ENSACCG00020001769) #26	EPHX4 (ENSACCG00020001793) #27	ENSACCG00020001834 #28	TGFBR3 (ENSACCG00020001917) #29	CDC7 (ENSACCG00020001988) #30	ZNF644 (ENSACCG00020002030) #32	BARHL2 (ENSACCG00020002062) #33	ZNF326 (ENSACCG00020002094)	LRRC8D (ENSACCG00020002113)	LRRC8C (ENSACCG00020002139)	LRRC8B (ENSACCG00020002152)	KYAT3 (ENSACCG00020002175)
Kakapo	MODERN SPECIES	25	NMNAT3 (ENSSHBG00005007222)	CLSTN2 (ENSSHBG00005007183)	TRIM42 (ENSSHBG00005007054)	ENSSHBG00005007033	SLC25A36 (ENSSHBG00005007014)	BCAR3 (ENSSHBG00005006986) #12	FNBP1L (ENSSHBG00005006896) #13	DR1 (ENSSHBG00005006857) #15	ENSSHBG00005006839	CCDC18 (ENSSHBG00005006585) #16	TMED5 (ENSSHBG00005006506) #17	MTF2 (ENSSHBG00005006490) #18	DIPK1A (ENSSHBG00005006475) #19	RPL5 (ENSSHBG00005006441) #20	EVI5 (ENSSHBG00005006419) #21	GFI1 (ENSSHBG00005006385) #22	RPAP2 (ENSSHBG00005006361) #23	GLMN (ENSSHBG00005006260) #24	C1orf146 (ENSSHBG00005006211) #25	BTBD8 (ENSSHBG00005006173) #26	ENSSHBG00005006136	EPHX4 (ENSSHBG00005006116) #27	TGFBR3 (ENSSHBG00005005189) #29	CDC7 (ENSSHBG00005005141) #30	ZNF644 (ENSSHBG00005005132) #32	BARHL2 (ENSSHBG00005014389) #33	ZNF326 (ENSSHBG00005014378)	LRRC8D (ENSSHBG00005014361)	LRRC8C (ENSSHBG00005014355)	LRRC8B (ENSSHBG00005014327)	KYAT3 (ENSSHBG00005014312)
African ostrich	MODERN SPECIES	875	TUBE1 (ENSSCUG00000015685)	CCN6 (ENSSCUG00000015689)	FYN (ENSSCUG00000015694)	ENSSCUG00000015699	ENSSCUG00000015701	REV3L (ENSSCUG00000015710)	MFSD4B (ENSSCUG00000015719)	FNBP1L (ENSSCUG00000015722) #13	ENSSCUG00000015728	CCDC18 (ENSSCUG00000015737) #16	TMED5 (ENSSCUG00000015768) #17	MTF2 (ENSSCUG00000015770) #18	DIPK1A (ENSSCUG00000015774) #19	RPL5 (ENSSCUG00000015776) #20	EVI5 (ENSSCUG00000015785) #21	GFI1 (ENSSCUG00000015799) #22	RPAP2 (ENSSCUG00000015803) #23	GLMN (ENSSCUG00000015806) #24	C1orf146 (ENSSCUG00000015811) #25	BTBD8 (ENSSCUG00000015814) #26	ENSSCUG00000015816	EPHX4 (ENSSCUG00000015817) #27	ENSSCUG00000015819	ENSSCUG00000015822 #28	TGFBR3 (ENSSCUG00000015828) #29	CDC7 (ENSSCUG00000015834) #30	ZNF644 (ENSSCUG00000015837) #32	ZNF326 (ENSSCUG00000015846)	LRRC8D (ENSSCUG00000015847)	LRRC8B (ENSSCUG00000015850)	KYAT3 (ENSSCUG00000015851)
Australian saltwater crocodile	MODERN SPECIES	28	ABCD3 (ENSCPRG00005014903) #7	ARHGAP29 (ENSCPRG00005014916) #8	ABCA4 (ENSCPRG00005015301) #9	ENSCPRG00005016455	DNTTIP2 (ENSCPRG00005016464) #11	BCAR3 (ENSCPRG00005016478) #12	FNBP1L (ENSCPRG00005016484) #13	ENSCPRG00005016493	CCDC18 (ENSCPRG00005016502) #16	TMED5 (ENSCPRG00005016513) #17	ENSCPRG00005016514 #18	ENSCPRG00005016517 #18	DIPK1A (ENSCPRG00005016519) #19	RPL5 (ENSCPRG00005016521) #20	EVI5 (ENSCPRG00005016539) #21	GFI1 (ENSCPRG00005016556) #22	RPAP2 (ENSCPRG00005016561) #23	GLMN (ENSCPRG00005016565) #24	C1orf146 (ENSCPRG00005016568) #25	ENSCPRG00005016571 #26	ENSCPRG00005016574 #26	EPHX4 (ENSCPRG00005016579) #27	ENSCPRG00005016584 #28	TGFBR3 (ENSCPRG00005016613) #29	CDC7 (ENSCPRG00005016740) #30	HFM1 (ENSCPRG00005016804) #31	ZNF644 (ENSCPRG00005016821) #32	BARHL2 (ENSCPRG00005016827) #33	ZNF326 (ENSCPRG00005016840)	LRRC8D (ENSCPRG00005016847)	LRRC8C (ENSCPRG00005016859)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408
Emydidae	ANCESTRAL SPECIES	24	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011.g #30	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408	ENSGT00940000160703
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	714	ENSCPBG00000015794	GLOD4 (ENSCPBG00000015792)	ENSCPBG00000015787	GEMIN4 (ENSCPBG00000015769)	TLCD3A (ENSCPBG00000015766)	VPS53 (ENSCPBG00000015765)	RFLNB (ENSCPBG00000015764)	ENSCPBG00000015762	ENSCPBG00000015760	DOC2B (ENSCPBG00000015758)	ENSCPBG00000015756	DIPK1A (ENSCPBG00000015751) #19	RPL5 (ENSCPBG00000015749) #20	EVI5 (ENSCPBG00000015746) #21	ENSCPBG00000015744 #22	ENSCPBG00000015742 #22	RPAP2 (ENSCPBG00000015739) #23	C1orf146 (ENSCPBG00000015738) #25	GLMN (ENSCPBG00000015735) #24	BTBD8 (ENSCPBG00000015731) #26	EPHX4 (ENSCPBG00000015728) #27	BRDT (ENSCPBG00000015696) #28	TGFBR3 (ENSCPBG00000015692) #29	CDC7 (ENSCPBG00000015690) #30	ZNF644 (ENSCPBG00000015686) #32	BARHL2 (ENSCPBG00000015683) #33	ZNF326 (ENSCPBG00000015682)	LRRC8D (ENSCPBG00000015680)	LRRC8C (ENSCPBG00000015678)	LRRC8B (ENSCPBG00000015677)	ENSCPBG00000015675
painted turtle	MODERN SPECIES	714	NXN (ENSCPBG00000015796)	ENSCPBG00000015794	GLOD4 (ENSCPBG00000015792)	ENSCPBG00000015787	GEMIN4 (ENSCPBG00000015769)	TLCD3A (ENSCPBG00000015766)	VPS53 (ENSCPBG00000015765)	RFLNB (ENSCPBG00000015764)	ENSCPBG00000015762	ENSCPBG00000015760	DOC2B (ENSCPBG00000015758)	ENSCPBG00000015756	DIPK1A (ENSCPBG00000015751) #19	RPL5 (ENSCPBG00000015749) #20	EVI5 (ENSCPBG00000015746) #21	ENSCPBG00000015744 #22	ENSCPBG00000015742 #22	RPAP2 (ENSCPBG00000015739) #23	C1orf146 (ENSCPBG00000015738) #25	GLMN (ENSCPBG00000015735) #24	BTBD8 (ENSCPBG00000015731) #26	EPHX4 (ENSCPBG00000015728) #27	BRDT (ENSCPBG00000015696) #28	TGFBR3 (ENSCPBG00000015692) #29	CDC7 (ENSCPBG00000015690) #30	ZNF644 (ENSCPBG00000015686) #32	BARHL2 (ENSCPBG00000015683) #33	ZNF326 (ENSCPBG00000015682)	LRRC8D (ENSCPBG00000015680)	LRRC8C (ENSCPBG00000015678)	LRRC8B (ENSCPBG00000015677)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000004483 #8	ENSTMTG00000004556 #9	ENSTMTG00000004629 #9	ENSTMTG00000004667	ENSTMTG00000004742 #11	ENSTMTG00000004764 #12	ENSTMTG00000004815 #13	ENSTMTG00000004854 #15	ENSTMTG00000004864	ENSTMTG00000004907 #16	ENSTMTG00000005054 #17	ENSTMTG00000005073 #18	ENSTMTG00000005115 #19	ENSTMTG00000005121 #20	ENSTMTG00000005152 #21	ENSTMTG00000005265 #22	ENSTMTG00000005285 #23	ENSTMTG00000005329 #24	ENSTMTG00000005376 #25	ENSTMTG00000005443 #26	ENSTMTG00000005453 #26	ENSTMTG00000005486 #27	ENSTMTG00000005519 #28	ENSTMTG00000005541 #29	ENSTMTG00000005569 #30	ENSTMTG00000005601 #32	ENSTMTG00000005614 #33	ENSTMTG00000005637	ENSTMTG00000005656	ENSTMTG00000005675	ENSTMTG00000005684
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000007208 #8	ENSTMTG00000007231 #9	ENSTMTG00000007309 #9	ENSTMTG00000007336	ENSTMTG00000007376 #11	ENSTMTG00000007395 #12	ENSTMTG00000007458 #13	ENSTMTG00000007895 #15	ENSTMTG00000007904	ENSTMTG00000007934 #16	ENSTMTG00000008061 #17	ENSTMTG00000008069 #18	ENSTMTG00000008106 #19	ENSTMTG00000008160 #20	ENSTMTG00000008201 #21	ENSTMTG00000008338 #22	ENSTMTG00000008424 #23	ENSTMTG00000008511 #24	ENSTMTG00000008611 #25	ENSTMTG00000008622 #26	ENSTMTG00000008629 #26	ENSTMTG00000008671 #27	ENSTMTG00000008724 #28	ENSTMTG00000008741 #29	ENSTMTG00000008772 #30	ENSTMTG00000008804 #32	ENSTMTG00000008841 #33	ENSTMTG00000008850	ENSTMTG00000008869	ENSTMTG00000008882	ENSTMTG00000008893
Testudinidae	ANCESTRAL SPECIES	23	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408
Abingdon island giant tortoise	MODERN SPECIES	280	HEY2 (ENSCABG00000007088)	ENSCABG00000007087	GCLM (ENSCABG00000007085) #10	DNTTIP2 (ENSCABG00000007084) #11	BCAR3 (ENSCABG00000007081) #12	FNBP1L (ENSCABG00000006255) #13	DR1 (ENSCABG00000006228) #15	ENSCABG00000006224	CCDC18 (ENSCABG00000006212) #16	TMED5 (ENSCABG00000006210) #17	MTF2 (ENSCABG00000006114) #18	ENSCABG00000006111	DIPK1A (ENSCABG00000006110) #19	RPL5 (ENSCABG00000006064) #20	EVI5 (ENSCABG00000006050) #21	GFI1 (ENSCABG00000006047) #22	RPAP2 (ENSCABG00000006034) #23	GLMN (ENSCABG00000006030) #24	C1orf146 (ENSCABG00000006025) #25	ENSCABG00000006024 #26	ENSCABG00000006019 #26	EPHX4 (ENSCABG00000006011) #27	BRDT (ENSCABG00000006001) #28	TGFBR3 (ENSCABG00000005997) #29	CDC7 (ENSCABG00000005594) #30	ENSCABG00000005577 #31
Goode s thornscrub tortoise	MODERN SPECIES	22	ARHGAP29 (ENSGEVG00005014048) #8	ABCA4 (ENSGEVG00005014159) #9	ENSGEVG00005014852	GCLM (ENSGEVG00005015158) #10	DNTTIP2 (ENSGEVG00005015184) #11	BCAR3 (ENSGEVG00005015211) #12	FNBP1L (ENSGEVG00005015301) #13	DR1 (ENSGEVG00005015342) #15	RDH8 (ENSGEVG00005015354)	CCDC18 (ENSGEVG00005004072) #16	TMED5 (ENSGEVG00005004173) #17	MTF2 (ENSGEVG00005004208) #18	DIPK1A (ENSGEVG00005004307) #19	RPL5 (ENSGEVG00005004377) #20	EVI5 (ENSGEVG00005004561) #21	GFI1 (ENSGEVG00005004890) #22	RPAP2 (ENSGEVG00005004920) #23	GLMN (ENSGEVG00005004976) #24	C1orf146 (ENSGEVG00005005034) #25	BTBD8 (ENSGEVG00005005108) #26	ENSGEVG00005005272	EPHX4 (ENSGEVG00005005293) #27	ENSGEVG00005005324 #28	TGFBR3 (ENSGEVG00005005355) #29	CDC7 (ENSGEVG00005005457) #30	ENSGEVG00005005575 #31	ZNF644 (ENSGEVG00005005627) #32	BARHL2 (ENSGEVG00005005695) #33	ENSGEVG00005005716	ZNF326 (ENSGEVG00005005737)	LRRC8D (ENSGEVG00005005762)
Chinese turtle	MODERN SPECIES	377	ABCA4 (ENSPSIG00000007886) #9	ENSPSIG00000008120	GCLM (ENSPSIG00000008171) #10	DNTTIP2 (ENSPSIG00000008273) #11	BCAR3 (ENSPSIG00000008285) #12	FNBP1L (ENSPSIG00000008423) #13	DR1 (ENSPSIG00000008429) #15	ENSPSIG00000008453	CCDC18 (ENSPSIG00000008498) #16	TMED5 (ENSPSIG00000008508) #17	MTF2 (ENSPSIG00000008513) #18	DIPK1A (ENSPSIG00000008617) #19	RPL5 (ENSPSIG00000008642) #20	EVI5 (ENSPSIG00000008714) #21	ENSPSIG00000001599	GFI1 (ENSPSIG00000008734) #22	RPAP2 (ENSPSIG00000008792) #23	ENSPSIG00000008802 #24	ENSPSIG00000008811 #24	C1orf146 (ENSPSIG00000008815) #25	BTBD8 (ENSPSIG00000008836) #26
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00510000048142 #11	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01010000226765	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Episquamata	DUPLICATION
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000156166.a.e #22
Laterata	ANCESTRAL SPECIES																	ENSGT00940000156166.a.e #22
Common wall lizard	MODERN SPECIES	419	QRFP (ENSPMRG00000023204)	FIBCD1 (ENSPMRG00000023194)	SURF4 (ENSPMRG00000023184)	REXO4 (ENSPMRG00000023178)	SETX (ENSPMRG00000023167)	ENSPMRG00000023146	ENSPMRG00000023139	ENSPMRG00000023137	BARHL1 (ENSPMRG00000023131)	DDX31 (ENSPMRG00000023121)	GTF3C4 (ENSPMRG00000023112)	ENSPMRG00000023108	SPACA9 (ENSPMRG00000023096)	TSC1 (ENSPMRG00000023086)	ENSPMRG00000023082	ENSPMRG00000023077 #22	GTF3C5 (ENSPMRG00000023072)	CEL (ENSPMRG00000023064)	ENSPMRG00000023056	RALGDS (ENSPMRG00000023032)	GBGT1 (ENSPMRG00000023014)	ENSPMRG00000023003	SURF6 (ENSPMRG00000022994)	ENSPMRG00000022992	ENSPMRG00000022979	SURF1 (ENSPMRG00000022973)	NTNG2 (ENSPMRG00000022966)	MED27 (ENSPMRG00000022959)	RAPGEF1 (ENSPMRG00000022822)	UCK1 (ENSPMRG00000022767)	POMT1 (ENSPMRG00000022702)
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000156166.a.e #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000156166.a.e #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000156166.a.e #22
Blue-lipped sea krait	MODERN SPECIES	7221																ENSLLTG00000014149 #22
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT01010000226765	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011.i #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596.c	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011.i #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596.c	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00960000193198	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011.i #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Mainland tiger snake	MODERN SPECIES	59				ENSNSUG00000019906	ENSNSUG00000019907	DPYD (ENSNSUG00000019908)	SNX7 (ENSNSUG00000019911)	PLPPR5 (ENSNSUG00000019912)	PLPPR4 (ENSNSUG00000019913)	PALMD (ENSNSUG00000019914)	FRRS1 (ENSNSUG00000019915)	AGL (ENSNSUG00000019920)	DIPK1A (ENSNSUG00000019961) #19	RPL5 (ENSNSUG00000019962) #20	EVI5 (ENSNSUG00000019965) #21	GFI1 (ENSNSUG00000019967) #22	RPAP2 (ENSNSUG00000019969) #23	ENSNSUG00000019970	C1orf146 (ENSNSUG00000019971) #25	BTBD8 (ENSNSUG00000019973) #26	ENSNSUG00000019974	EPHX4 (ENSNSUG00000019975) #27	ENSNSUG00000019978 #28	TGFBR3 (ENSNSUG00000019981) #29	CDC7 (ENSNSUG00000019983) #30	ENSNSUG00000019984 #31	ZNF644 (ENSNSUG00000019986) #32	ENSNSUG00000019988	BARHL2 (ENSNSUG00000019989) #33	ZNF326 (ENSNSUG00000019992)	LRRC8D (ENSNSUG00000019993)
Eastern brown snake	MODERN SPECIES	13	ALG14 (ENSPTXG00000004696)	TLCD4 (ENSPTXG00000004694)	HCCS (ENSPTXG00000004693)	RWDD3 (ENSPTXG00000004692)	PTBP2 (ENSPTXG00000004691)	DPYD (ENSPTXG00000003743)	SNX7 (ENSPTXG00000003737)	PLPPR5 (ENSPTXG00000006567)	PLPPR4 (ENSPTXG00000006565)	PALMD (ENSPTXG00000006562)	FRRS1 (ENSPTXG00000006505)	AGL (ENSPTXG00000006500)	DIPK1A (ENSPTXG00000006499) #19	RPL5 (ENSPTXG00000006497) #20	EVI5 (ENSPTXG00000006496) #21	GFI1 (ENSPTXG00000006495) #22	RPAP2 (ENSPTXG00000006494) #23	ENSPTXG00000006493	C1orf146 (ENSPTXG00000006492) #25	BTBD8 (ENSPTXG00000006411) #26	EPHX4 (ENSPTXG00000006410) #27	ENSPTXG00000006409 #28	TGFBR3 (ENSPTXG00000006408) #29	CDC7 (ENSPTXG00000006407) #30	ZNF644 (ENSPTXG00000006406) #32	BARHL2 (ENSPTXG00000006405) #33	ZNF326 (ENSPTXG00000006404)	LRRC8D (ENSPTXG00000006403)	LRRC8C (ENSPTXG00000006402)	LRRC8B (ENSPTXG00000006401)	KYAT3 (ENSPTXG00000006400)
Blue-lipped sea krait	MODERN SPECIES	4229																GFI1 (ENSLLTG00000002382) #22
Indian cobra	MODERN SPECIES	2	HCCS (ENSNNAG00000002214)	RWDD3 (ENSNNAG00000002199)	ENSNNAG00000002177	ENSNNAG00000002156	DPYD (ENSNNAG00000001862)	ENSNNAG00000001460	SNX7 (ENSNNAG00000001433)	PLPPR5 (ENSNNAG00000001414)	PLPPR4 (ENSNNAG00000001390)	PALMD (ENSNNAG00000001340)	FRRS1 (ENSNNAG00000001296)	AGL (ENSNNAG00000001104)	DIPK1A (ENSNNAG00000000987) #19	RPL5 (ENSNNAG00000000963) #20	EVI5 (ENSNNAG00000000841) #21	GFI1 (ENSNNAG00000002852) #22	RPAP2 (ENSNNAG00000002831) #23	GLMN (ENSNNAG00000002805) #24	C1orf146 (ENSNNAG00000002794) #25	BTBD8 (ENSNNAG00000002785) #26	ENSNNAG00000002770	ENSNNAG00000002765	EPHX4 (ENSNNAG00000002757) #27	BRDT (ENSNNAG00000002734) #28	TGFBR3 (ENSNNAG00000002610) #29	CDC7 (ENSNNAG00000002578) #30	ZNF644 (ENSNNAG00000002559) #32	BARHL2 (ENSNNAG00000002525) #33	ZNF326 (ENSNNAG00000002510)	ENSNNAG00000002497	ENSNNAG00000002491
Lizard	MODERN SPECIES	3	ENSACAG00000039514	ENSACAG00000041496	ENSACAG00000044204	ENSACAG00000038791	SNX7 (ENSACAG00000000581)	PLPPR5 (ENSACAG00000029291)	ENSACAG00000029583	PLPPR4 (ENSACAG00000003883)	PALMD (ENSACAG00000003937)	FRRS1 (ENSACAG00000003958)	ENSACAG00000003989	AGL (ENSACAG00000003990)	DIPK1A (ENSACAG00000035812) #19	ENSACAG00000004265 #20	EVI5 (ENSACAG00000004351) #21	GFI1 (ENSACAG00000002822) #22	RPAP2 (ENSACAG00000004529) #23	ENSACAG00000037817	GLMN (ENSACAG00000004573) #24	C1orf146 (ENSACAG00000004656) #25	BTBD8 (ENSACAG00000004659) #26	EPHX4 (ENSACAG00000029591) #27	BRDT (ENSACAG00000004674) #28	ENSACAG00000039264	TGFBR3 (ENSACAG00000001384) #29	CDC7 (ENSACAG00000001503) #30	HFM1 (ENSACAG00000021072) #31	ZNF644 (ENSACAG00000001608) #32	ENSACAG00000044551	ZNF326 (ENSACAG00000001151)	LRRC8D (ENSACAG00000021120)
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000002579	ENSGT01010000222313.A.b.a.d	ENSGT00390000004175	ENSGT00390000000954	ENSGT01050000244924.a.b	ENSGT00500000044896	ENSGT00940000155315	ENSGT00940000158610	ENSGT00940000156181.B	ENSGT00940000157718	ENSGT00940000157704	ENSGT00390000012596	ENSGT00390000006452.b.b #19	ENSGT00950000183210.d.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.f #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233.m.b #27	ENSGT00940000177865.c	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250
Common wall lizard	MODERN SPECIES	14	HCCS (ENSPMRG00000013937)	RWDD3 (ENSPMRG00000013943)	PTBP2 (ENSPMRG00000013963)	DPYD (ENSPMRG00000014006)	SNX7 (ENSPMRG00000007100)	ENSPMRG00000007117	PLPPR5 (ENSPMRG00000007122)	ENSPMRG00000007129	PALMD (ENSPMRG00000007141)	FRRS1 (ENSPMRG00000007165)	AGL (ENSPMRG00000007223)	DIPK1A (ENSPMRG00000007285) #19	RPL5 (ENSPMRG00000007293) #20	EVI5 (ENSPMRG00000007319) #21	ENSPMRG00000007349	GFI1 (ENSPMRG00000007356) #22	ENSPMRG00000007365	RPAP2 (ENSPMRG00000007382) #23	ENSPMRG00000007406	GLMN (ENSPMRG00000007421) #24	C1orf146 (ENSPMRG00000007460) #25	BTBD8 (ENSPMRG00000007479) #26	EPHX4 (ENSPMRG00000007522) #27	ENSPMRG00000007532	BRDT (ENSPMRG00000007548) #28	TGFBR3 (ENSPMRG00000007579) #29	CDC7 (ENSPMRG00000007616) #30	HFM1 (ENSPMRG00000007707) #31	ZNF644 (ENSPMRG00000007723) #32	BARHL2 (ENSPMRG00000007728) #33	ENSPMRG00000007735
Argentine black and white tegu	MODERN SPECIES	130										PALMD (ENSSMRG00000021373)	FRRS1 (ENSSMRG00000021372)	AGL (ENSSMRG00000021371)	DIPK1A (ENSSMRG00000021370) #19	RPL5 (ENSSMRG00000021368) #20	EVI5 (ENSSMRG00000021367) #21	GFI1 (ENSSMRG00000021366) #22	RPAP2 (ENSSMRG00000021365) #23	GLMN (ENSSMRG00000021364) #24	C1orf146 (ENSSMRG00000021363) #25	BTBD8 (ENSSMRG00000021362) #26	ENSSMRG00000021361 #27	BRDT (ENSSMRG00000021360) #28	TGFBR3 (ENSSMRG00000021358) #29
Anura	ANCESTRAL SPECIES	6	ENSGT00950000182955.a.a.a #7	ENSGT00950000183110.b.b #8	ENSGT00940000155624.b #9	ENSGT00950000182886.a.a.a	ENSGT00510000047658 #10	ENSGT00940000154130.a.a.b #12	ENSGT00950000183047.c.b #13	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A #16	ENSGT00940000155468 #17	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000020924	ENSLLEG00000021006	ENSLLEG00000021309	GCLM (ENSLLEG00000021840) #10	BCAR3 (ENSLLEG00000022071) #12	FNBP1L (ENSLLEG00000022208) #13	DR1 (ENSLLEG00000022778) #15	ENSLLEG00000022834	CCDC18 (ENSLLEG00000023034) #16	TMED5 (ENSLLEG00000023458) #17	MTF2 (ENSLLEG00000023696) #18	DIPK1A (ENSLLEG00000026944) #19	ENSLLEG00000027165 #20	EVI5 (ENSLLEG00000027596) #21	ENSLLEG00000028278	GFI1 (ENSLLEG00000028317) #22	RPAP2 (ENSLLEG00000028477) #23	GLMN (ENSLLEG00000028563) #24	ENSLLEG00000028649 #25	BTBD8 (ENSLLEG00000028710) #26	ENSLLEG00000028904	EPHX4 (ENSLLEG00000028918) #27	BRDT (ENSLLEG00000028948) #28	ENSLLEG00000029005	TGFBR3 (ENSLLEG00000029035) #29	ENSLLEG00000029168	CDC7 (ENSLLEG00000029180) #30	HFM1 (ENSLLEG00000029251) #31	ENSLLEG00000029627	ENSLLEG00000029640	ZNF644 (ENSLLEG00000029656) #32
Frog	MODERN SPECIES	4	mgc146850 (ENSXETG00000038549)	gclm (ENSXETG00000008224) #10	ENSXETG00000008225	ENSXETG00000044522	bcar3 (ENSXETG00000008226) #12	fnbp1l (ENSXETG00000008227) #13	dr1 (ENSXETG00000022989) #15	XB1000829 [provisional] (ENSXETG00000022991)	ccdc18 (ENSXETG00000022999) #16	tmed5 (ENSXETG00000023000) #17	mtf2 (ENSXETG00000023001) #18	dipk1a (ENSXETG00000023002) #19	XB964897 [provisional:lrrc8c] (ENSXETG00000023003)	rpl5 (ENSXETG00000023004) #20	evi5 (ENSXETG00000023005) #21	gfi1 (ENSXETG00000023006) #22	rpap2 (ENSXETG00000023007) #23	glmn (ENSXETG00000023009) #24	ENSXETG00000047613	C1orf146 (ENSXETG00000035474) #25	btbd8 (ENSXETG00000023013) #26	ephx4 (ENSXETG00000023020) #27	brdt (ENSXETG00000008571)	tgfbr3 (ENSXETG00000023030) #29	cdc7 (ENSXETG00000023034) #30	hfm1 (ENSXETG00000029954) #31	znf644 (ENSXETG00000023985) #32	barhl2 (ENSXETG00000023986) #33	znf326 (ENSXETG00000006087)	ENSXETG00000046193	lrrc8d (ENSXETG00000006088)
Coelacanth	MODERN SPECIES	936									DR1 (ENSLACG00000003717) #15	scinla (ENSLACG00000005727)	CCDC18 (ENSLACG00000007693) #16	MTF2 (ENSLACG00000009086) #18	DIPK1A (ENSLACG00000010057) #19	RPL5 (ENSLACG00000010794) #20	EVI5 (ENSLACG00000011246) #21	GFI1 (ENSLACG00000013362) #22	RPAP2 (ENSLACG00000013845) #23	GLMN (ENSLACG00000014096) #24	C1orf146 (ENSLACG00000014266) #25
Actinopterygii	ANCESTRAL SPECIES	57								ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.b #26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	1	rps21 (ENSECRG00000007291)	ENSECRG00000007278	CCM2L (ENSECRG00000007227)	XKR7 (ENSECRG00000007205)	ENSECRG00000007196	ENSECRG00000007192	tcea2 (ENSECRG00000007180)	ENSECRG00000007171	ENSECRG00000007157	ENSECRG00000022993	oprl1 (ENSECRG00000022992)	ENSECRG00000022991	ENSECRG00000022990	ENSECRG00000022988	gfi1ab (ENSECRG00000022987) #22	gfi1ab (ENSECRG00000022980) #22	gfi1ab (ENSECRG00000022963) #22	gfi1ab (ENSECRG00000022957) #22	gid8a (ENSECRG00000022955)	dnajc5aa (ENSECRG00000022953)	trim101 (ENSECRG00000022951)	ENSECRG00000022950	uckl1a (ENSECRG00000022947)	ZNF512B (ENSECRG00000022944)	ENSECRG00000022943	samd10a (ENSECRG00000022940)	DIDO1 (ENSECRG00000022937)	prkcbp1l (ENSECRG00000022936)	zgc:113278 (ENSECRG00000022934)	NCOA3 (ENSECRG00000022933)	sulf2b (ENSECRG00000022932)
Reedfish	MODERN SPECIES	1	lama5 (ENSECRG00000007321)	rps21 (ENSECRG00000007291)	ENSECRG00000007278	CCM2L (ENSECRG00000007227)	XKR7 (ENSECRG00000007205)	ENSECRG00000007196	ENSECRG00000007192	tcea2 (ENSECRG00000007180)	ENSECRG00000007171	ENSECRG00000007157	ENSECRG00000022993	oprl1 (ENSECRG00000022992)	ENSECRG00000022991	ENSECRG00000022990	ENSECRG00000022988	gfi1ab (ENSECRG00000022987) #22	gfi1ab (ENSECRG00000022980) #22	gfi1ab (ENSECRG00000022963) #22	gfi1ab (ENSECRG00000022957) #22	gid8a (ENSECRG00000022955)	dnajc5aa (ENSECRG00000022953)	trim101 (ENSECRG00000022951)	ENSECRG00000022950	uckl1a (ENSECRG00000022947)	ZNF512B (ENSECRG00000022944)	ENSECRG00000022943	samd10a (ENSECRG00000022940)	DIDO1 (ENSECRG00000022937)	prkcbp1l (ENSECRG00000022936)	zgc:113278 (ENSECRG00000022934)	NCOA3 (ENSECRG00000022933)
Reedfish	MODERN SPECIES	1	ENSECRG00000007278	CCM2L (ENSECRG00000007227)	XKR7 (ENSECRG00000007205)	ENSECRG00000007196	ENSECRG00000007192	tcea2 (ENSECRG00000007180)	ENSECRG00000007171	ENSECRG00000007157	ENSECRG00000022993	oprl1 (ENSECRG00000022992)	ENSECRG00000022991	ENSECRG00000022990	ENSECRG00000022988	gfi1ab (ENSECRG00000022987) #22	gfi1ab (ENSECRG00000022980) #22	gfi1ab (ENSECRG00000022963) #22	gfi1ab (ENSECRG00000022957) #22	gid8a (ENSECRG00000022955)	dnajc5aa (ENSECRG00000022953)	trim101 (ENSECRG00000022951)	ENSECRG00000022950	uckl1a (ENSECRG00000022947)	ZNF512B (ENSECRG00000022944)	ENSECRG00000022943	samd10a (ENSECRG00000022940)	DIDO1 (ENSECRG00000022937)	prkcbp1l (ENSECRG00000022936)	zgc:113278 (ENSECRG00000022934)	NCOA3 (ENSECRG00000022933)	sulf2b (ENSECRG00000022932)	ENSECRG00000022930
Reedfish	MODERN SPECIES	1	CCM2L (ENSECRG00000007227)	XKR7 (ENSECRG00000007205)	ENSECRG00000007196	ENSECRG00000007192	tcea2 (ENSECRG00000007180)	ENSECRG00000007171	ENSECRG00000007157	ENSECRG00000022993	oprl1 (ENSECRG00000022992)	ENSECRG00000022991	ENSECRG00000022990	ENSECRG00000022988	gfi1ab (ENSECRG00000022987) #22	gfi1ab (ENSECRG00000022980) #22	gfi1ab (ENSECRG00000022963) #22	gfi1ab (ENSECRG00000022957) #22	gid8a (ENSECRG00000022955)	dnajc5aa (ENSECRG00000022953)	trim101 (ENSECRG00000022951)	ENSECRG00000022950	uckl1a (ENSECRG00000022947)	ZNF512B (ENSECRG00000022944)	ENSECRG00000022943	samd10a (ENSECRG00000022940)	DIDO1 (ENSECRG00000022937)	prkcbp1l (ENSECRG00000022936)	zgc:113278 (ENSECRG00000022934)	NCOA3 (ENSECRG00000022933)	sulf2b (ENSECRG00000022932)	ENSECRG00000022930	mrgbp (ENSECRG00000022926)
Reedfish	MODERN SPECIES	1	MYT1 (ENSECRG00000008019)	pcmtd2a (ENSECRG00000008143)	srms (ENSECRG00000008159)	ptk6b (ENSECRG00000008215)	ENSECRG00000008302	ppdpfb (ENSECRG00000008317)	tpd52l2a (ENSECRG00000008341)	ZBTB46 (ENSECRG00000008366)	ENSECRG00000008380	ENSECRG00000008396	nkain4 (ENSECRG00000008415)	ENSECRG00000008430	ythdf1 (ENSECRG00000008442)	bhlhe23 (ENSECRG00000008458)	slc17a9b (ENSECRG00000008495)	gfi1ab (ENSECRG00000008535) #22	ENSECRG00000008564	ENSECRG00000008574	ZNFX1 (ENSECRG00000008584)	ddx27 (ENSECRG00000008614)	stau1 (ENSECRG00000008635)	KCNB1 (ENSECRG00000008684)	ENSECRG00000008692	ENSECRG00000008716	ENSECRG00000008753	arfgap1 (ENSECRG00000008767)	rh50 (ENSECRG00000008821)	ENSECRG00000008932	ENSECRG00000008952	sys1 (ENSECRG00000008967)	ENSECRG00000008983
Reedfish	MODERN SPECIES	1	mknk1 (ENSECRG00000019960)	mob3c (ENSECRG00000019929)	elovl1a (ENSECRG00000019902)	cdc20 (ENSECRG00000019867)	CC2D1B (ENSECRG00000019819)	ZFYVE9 (ENSECRG00000019771)	btf3l4 (ENSECRG00000019740)	dr1 (ENSECRG00000019722) #15	zgc:109982 (ENSECRG00000019676)	scinla (ENSECRG00000019612)	ccdc18 (ENSECRG00000019536) #16	mtf2 (ENSECRG00000019484) #18	dipk1aa (ENSECRG00000019453) #19	rpl5b (ENSECRG00000019410) #20	EVI5 (ENSECRG00000019324) #21	gfi1ab (ENSECRG00000019133) #22	RPAP2 (ENSECRG00000019030) #23	glmnb (ENSECRG00000018928) #24	C1orf146 (ENSECRG00000018866) #25	ENSECRG00000018833 #26	EPHX4 (ENSECRG00000018804) #27	BRDT (ENSECRG00000018739) #28	tgfbr3 (ENSECRG00000018492) #29	cdc7 (ENSECRG00000018400) #30	ZNF644 (ENSECRG00000018355) #32	barhl2 (ENSECRG00000018325) #33	znf326 (ENSECRG00000018265)	lrrc8db (ENSECRG00000018226)	LRRC8C (ENSECRG00000018210)	kyat3.2 (ENSECRG00000018135)	gtf2b (ENSECRG00000018069)
Neopterygii	ANCESTRAL SPECIES	9	ENSGT00950000182964.a.a	ENSGT01100000263497.E.b	ENSGT00390000005897.i	ENSGT00950000182964.a.b.a.a.b	ENSGT00950000182964.a.b.a.a.a	ENSGT00940000158196	ENSGT00390000005897.j	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210 #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446 #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B
Spotted gar	MODERN SPECIES	648	ENSLOCG00000004460	glula (ENSLOCG00000004472)	ZNF648 (ENSLOCG00000017736)	ENSLOCG00000004491	gadd45aa (ENSLOCG00000004532)	ENSLOCG00000017737	wls (ENSLOCG00000004552)	dr1 (ENSLOCG00000004566) #15	zgc:109982 (ENSLOCG00000004583)	ENSLOCG00000004603	ccdc18 (ENSLOCG00000004628) #16	mtf2 (ENSLOCG00000004649) #18	dipk1aa (ENSLOCG00000004662) #19	rpl5b (ENSLOCG00000004677) #20	EVI5 (ENSLOCG00000004695) #21	gfi1ab (ENSLOCG00000004711) #22	rpap2 (ENSLOCG00000004726) #23	glmnb (ENSLOCG00000004740) #24	C1orf146 (ENSLOCG00000004762) #25	ENSLOCG00000004797 ##26	EPHX4 (ENSLOCG00000004839) #27	BRDT (ENSLOCG00000004853) #28	tgfbr3 (ENSLOCG00000004872) #29	cdc7 (ENSLOCG00000004901) #30	HFM1 (ENSLOCG00000004931) #31	znf644a (ENSLOCG00000004952) #32	barhl2 (ENSLOCG00000004982) #33	znf326 (ENSLOCG00000004998)	ENSLOCG00000017738	LRRC8C (ENSLOCG00000005018)	kyat3.2 (ENSLOCG00000005032)
Osteoglossocephalai	ANCESTRAL SPECIES	16	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a	ENSGT01100000263497.E.b	ENSGT00390000005897.j	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.g.b #20	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00390000009916	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611 #33
Osteoglossiformes	ANCESTRAL SPECIES	30	ENSGT00390000010047.g.b	ENSGT00940000163676	ENSGT00940000177801	ENSGT00950000182964.a.a	ENSGT01100000263497.E.b	ENSGT00940000158196.a	ENSGT00390000005897.j	ENSGT00550000075010 #15	ENSGT00940000164612	ENSGT00940000153190.A #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b #19	ENSGT00950000183210.g.b #20	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.a #24	ENSGT00940000154382.a.a.b ##26	ENSGT00940000156233 #27	ENSGT00530000063861.b.b.a #29	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258 #32	ENSGT01060000248660	ENSGT00940000158611.e #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250.e	ENSGT00390000006671	ENSGT00940000154339
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015020953	ENSSFOG00015020934	myo1cb (ENSSFOG00015020817)	ENSSFOG00015028095	aasdhppt (ENSSFOG00015028809)	gria4b (ENSSFOG00015020773)	mtnr1bb (ENSSFOG00015024650)	wls (ENSSFOG00015020722)	dr1 (ENSSFOG00015020716) #15	scinla (ENSSFOG00015020694)	ccdc18 (ENSSFOG00015029275) #16	mtf2 (ENSSFOG00015020651) #18	dipk1aa (ENSSFOG00015031285) #19	RPL5 (ENSSFOG00015020591) #20	EVI5 (ENSSFOG00015020368) #21	gfi1ab (ENSSFOG00015028337) #22	rpap2 (ENSSFOG00015020266) #23	glmnb (ENSSFOG00015020246) #24	ENSSFOG00015020233 ##26	EPHX4 (ENSSFOG00015030128) #27	tgfbr3 (ENSSFOG00015020203) #29	cdc7 (ENSSFOG00015020185) #30	HFM1 (ENSSFOG00015020129) #31	znf644a (ENSSFOG00015020117) #32	barhl2 (ENSSFOG00015020036) #33	znf326 (ENSSFOG00015020009)	lrrc8db (ENSSFOG00015020004)	LRRC8C (ENSSFOG00015019996)	gtf2b (ENSSFOG00015019976)	PKN2 (ENSSFOG00015019915)	lmo4b (ENSSFOG00015029119)
P. kingsleyae	MODERN SPECIES	157	ENSPKIG00000005380	pbx1a (ENSPKIG00000005330)	glula (ENSPKIG00000005295)	ZNF648 (ENSPKIG00000005276)	ENSPKIG00000005261	gadd45aa (ENSPKIG00000005239)	gng12a (ENSPKIG00000005204)	wls (ENSPKIG00000005148)	dr1 (ENSPKIG00000005128) #15	scinla (ENSPKIG00000005081)	ccdc18 (ENSPKIG00000005015) #16	mtf2 (ENSPKIG00000004962) #18	dipk1aa (ENSPKIG00000004912) #19	rpl5b (ENSPKIG00000004868) #20	EVI5 (ENSPKIG00000004515) #21	gfi1ab (ENSPKIG00000004263) #22	rpap2 (ENSPKIG00000004203) #23	glmnb (ENSPKIG00000004156) #24	ENSPKIG00000004122 ##26	EPHX4 (ENSPKIG00000004083) #27	tgfbr3 (ENSPKIG00000003970) #29	cdc7 (ENSPKIG00000003934) #30	HFM1 (ENSPKIG00000003810) #31	ZNF644 (ENSPKIG00000003708) #32	ENSPKIG00000003693	barhl2 (ENSPKIG00000003671) #33	LRRC8D (ENSPKIG00000003663)	LRRC8C (ENSPKIG00000003648)	gtf2b (ENSPKIG00000003604)	PKN2 (ENSPKIG00000003491)	lmo4b (ENSPKIG00000003425)
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156166.a.i.a #22
Euteleosteomorpha	ANCESTRAL SPECIES	63	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Tiger tail seahorse	MODERN SPECIES	269	bag1 (ENSHCOG00000018624)	ENSHCOG00000018632	oprk1 (ENSHCOG00000018983)	atp6v1h (ENSHCOG00000019043)	ENSHCOG00000019072	tcea1 (ENSHCOG00000019117)	ENSHCOG00000019140	viml (ENSHCOG00000019169)	PDE1C (ENSHCOG00000000634)	neurod6b (ENSHCOG00000019364)	wls (ENSHCOG00000019394)	scinlb (ENSHCOG00000019436)	mtf2 (ENSHCOG00000019448) #18	dipk1aa (ENSHCOG00000019484) #19	RPL5 (ENSHCOG00000019530) #20	GFI1 (ENSHCOG00000019555) #22	rpap2 (ENSHCOG00000019576) #23	glmna (ENSHCOG00000019587) #24	cdc7 (ENSHCOG00000019594) #30	HFM1 (ENSHCOG00000019632) #31	znf644a (ENSHCOG00000019643) #32	ENSHCOG00000019648	gtf2b (ENSHCOG00000019687)	PKN2 (ENSHCOG00000019763)	hs2st1a (ENSHCOG00000019795)	selenof (ENSHCOG00000019809)	SOX14 (ENSHCOG00000019825)	ENSHCOG00000019835	ENSHCOG00000019849	stk25b (ENSHCOG00000019879)	ENSHCOG00000019885
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a	ENSGT00390000009776.p
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT01030000235075.b	ENSGT00940000158258.f #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Poecilia	ANCESTRAL SPECIES	19	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT01030000235075.b	ENSGT00940000158258.f #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
NAME_6	ANCESTRAL SPECIES	106	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a	ENSGT00390000009776.p
Amazon molly	MODERN SPECIES	480		st3gal3b (ENSPFOG00000017614)	ENSPFOG00000017610	ptger4c (ENSPFOG00000017607)	pif1 (ENSPFOG00000017562)	ENSPFOG00000017555	nsun4 (ENSPFOG00000017543)	dmbx1a (ENSPFOG00000017534)	gadd45aa (ENSPFOG00000017519)	wls (ENSPFOG00000017449)	scinlb (ENSPFOG00000017425)	ccdc18 (ENSPFOG00000017397) #16	mtf2 (ENSPFOG00000017365) #18	dipk1aa (ENSPFOG00000017351) #19	RPL5 (ENSPFOG00000017339) #20	GFI1 (ENSPFOG00000017327) #22	rpap2 (ENSPFOG00000017280) #23	glmna (ENSPFOG00000017234) #24	cdc7 (ENSPFOG00000017217) #30	HFM1 (ENSPFOG00000017194) #31	znf644a (ENSPFOG00000017182) #32	ENSPFOG00000022737	ENSPFOG00000020879	gtf2b (ENSPFOG00000017172)	PKN2 (ENSPFOG00000017072)	hs2st1a (ENSPFOG00000017051)	selenof (ENSPFOG00000017044)	SOX14 (ENSPFOG00000020878)	septin2 (ENSPFOG00000017007)	stk25b (ENSPFOG00000016950)	mffb (ENSPFOG00000016936)
Sailfin molly	MODERN SPECIES	964	ENSPLAG00000005138	ptger4c (ENSPLAG00000005146)	pif1 (ENSPLAG00000005173)	ENSPLAG00000005183	nsun4 (ENSPLAG00000005187)	dmbx1a (ENSPLAG00000005197)	gadd45aa (ENSPLAG00000000096)	GNG12 (ENSPLAG00000005214)	ENSPLAG00000005225	wls (ENSPLAG00000005256)	scinlb (ENSPLAG00000005264)	ccdc18 (ENSPLAG00000005283) #16	mtf2 (ENSPLAG00000005299) #18	dipk1aa (ENSPLAG00000005338) #19	RPL5 (ENSPLAG00000005366) #20	GFI1 (ENSPLAG00000005376) #22	rpap2 (ENSPLAG00000005383) #23	glmna (ENSPLAG00000005392) #24	cdc7 (ENSPLAG00000005408) #30	HFM1 (ENSPLAG00000000571) #31	znf644a (ENSPLAG00000005497) #32	ENSPLAG00000005536	ENSPLAG00000005548	gtf2b (ENSPLAG00000005576)	PKN2 (ENSPLAG00000005646)	hs2st1a (ENSPLAG00000005707)
Guppy	MODERN SPECIES	447	st3gal3b (ENSPREG00000008504)	ENSPREG00000008481	ptger4c (ENSPREG00000008468)	pif1 (ENSPREG00000008426)	ENSPREG00000008417	nsun4 (ENSPREG00000008399)	dmbx1a (ENSPREG00000008382)	gadd45aa (ENSPREG00000008238)	GNG12 (ENSPREG00000008219)	wls (ENSPREG00000008184)	scinlb (ENSPREG00000008149)	ccdc18 (ENSPREG00000008120) #16	mtf2 (ENSPREG00000008096) #18	dipk1aa (ENSPREG00000008080) #19	RPL5 (ENSPREG00000008026) #20	GFI1 (ENSPREG00000007997) #22	rpap2 (ENSPREG00000007978) #23	glmna (ENSPREG00000007958) #24	cdc7 (ENSPREG00000007945) #30	ENSPREG00000007931	HFM1 (ENSPREG00000007803) #31	ENSPREG00000007765	znf644a (ENSPREG00000007750) #32	ENSPREG00000007744	gtf2b (ENSPREG00000007718)	PKN2 (ENSPREG00000007638)	hs2st1a (ENSPREG00000007596)	selenof (ENSPREG00000007576)	SOX14 (ENSPREG00000007564)	septin2 (ENSPREG00000007538)	stk25b (ENSPREG00000007506)
Platyfish	MODERN SPECIES	20	ENSXMAG00000003941	ptger4c (ENSXMAG00000026789)	ENSXMAG00000027711	pif1 (ENSXMAG00000003946)	ENSXMAG00000003962	nsun4 (ENSXMAG00000003968)	dmbx1a (ENSXMAG00000003977)	gadd45aa (ENSXMAG00000022990)	GNG12 (ENSXMAG00000022664)	wls (ENSXMAG00000003993)	scinlb (ENSXMAG00000004018)	ccdc18 (ENSXMAG00000004056) #16	mtf2 (ENSXMAG00000004060) #18	dipk1aa (ENSXMAG00000004088) #19	RPL5 (ENSXMAG00000004091) #20	GFI1 (ENSXMAG00000009274) #22	rpap2 (ENSXMAG00000004104) #23	glmna (ENSXMAG00000004123) #24	cdc7 (ENSXMAG00000004158) #30	HFM1 (ENSXMAG00000004178) #31	ENSXMAG00000025575	znf644a (ENSXMAG00000004203) #32	ENSXMAG00000025351	ENSXMAG00000019558	gtf2b (ENSXMAG00000004206)	PKN2 (ENSXMAG00000004214)	hs2st1a (ENSXMAG00000028198)	selenof (ENSXMAG00000028994)	SOX14 (ENSXMAG00000019904)	septin2 (ENSXMAG00000004256)	stk25b (ENSXMAG00000004304)
NAME_4	ANCESTRAL SPECIES	35											ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339.b	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a	ENSGT00390000009776.p	ENSGT00940000155807.b
Mummichog	MODERN SPECIES	773											scinlb (ENSFHEG00000014500)	ccdc18 (ENSFHEG00000014437) #16	mtf2 (ENSFHEG00000014406) #18	dipk1aa (ENSFHEG00000014399) #19	RPL5 (ENSFHEG00000014391) #20	GFI1 (ENSFHEG00000000341) #22	rpap2 (ENSFHEG00000014315) #23	glmna (ENSFHEG00000014306) #24	cdc7 (ENSFHEG00000014279) #30
Sheepshead minnow	MODERN SPECIES	884												scinlb (ENSCVAG00000004801)	mtf2 (ENSCVAG00000004883) #18	dipk1aa (ENSCVAG00000004895) #19	RPL5 (ENSCVAG00000004913) #20	GFI1 (ENSCVAG00000004930) #22	ENSCVAG00000004960 #23	ENSCVAG00000004967	cdc7 (ENSCVAG00000004980) #30	HFM1 (ENSCVAG00000005075) #31	ENSCVAG00000005097 #32
Aplocheiloidei	ANCESTRAL SPECIES	64	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000155098	ENSGT00940000153476.a	ENSGT00390000009776.p
Turquoise killifish	MODERN SPECIES	41													ENSNFUG00015019523 #18	FAM69A (ENSNFUG00015019526) #19	RPL5 (ENSNFUG00015019531) #20	GFI1 (ENSNFUG00015019537) #22	RPAP2 (ENSNFUG00015019548) #23	cdc7 (ENSNFUG00015019573) #30	ENSNFUG00015019597	HFM1 (ENSNFUG00015019606) #31	ENSNFUG00015019631 #32	ENSNFUG00015019639	OLA.12830 (ENSNFUG00015019656)	ENSNFUG00015019665
Oryzias	ANCESTRAL SPECIES	47	ENSGT00940000154654.a.a.j	ENSGT00390000016559	ENSGT00940000158174.b	ENSGT00940000159478.e	ENSGT00910000144227	ENSGT00940000164521.f	ENSGT00940000176935	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Oryzias_a	ANCESTRAL SPECIES	25	ENSGT00940000154654.a.a.j	ENSGT00390000016559	ENSGT00940000158174.b	ENSGT00940000159478.e	ENSGT00910000144227	ENSGT00940000164521.f	ENSGT00940000176935	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Chinese medaka	MODERN SPECIES	589	ENSOSIG00000002980	ENSOSIG00000002986	rnf2 (ENSOSIG00000003007)	ARPC5 (ENSOSIG00000003044)	DEPDC5 (ENSOSIG00000003069)	angptl4 (ENSOSIG00000005006)	rps28 (ENSOSIG00000005008)	ENSOSIG00000005014	ENSOSIG00000005019	gadd45aa (ENSOSIG00000005023)	wls (ENSOSIG00000005035)	ccdc18 (ENSOSIG00000005681) #16	mtf2 (ENSOSIG00000005694) #18	dipk1aa (ENSOSIG00000005696) #19	RPL5 (ENSOSIG00000005698) #20	GFI1 (ENSOSIG00000005700) #22	rpap2 (ENSOSIG00000005714) #23	glmna (ENSOSIG00000005717) #24	ENSOSIG00000005734	gtf2b (ENSOSIG00000005735)	ENSOSIG00000005738	ENSOSIG00000005740	hs2st1a (ENSOSIG00000005743)	selenof (ENSOSIG00000005744)	SOX14 (ENSOSIG00000005746)	septin2 (ENSOSIG00000005756)	stk25b (ENSOSIG00000006396)	ENSOSIG00000006825	zgc:110269 (ENSOSIG00000006826)	ENSOSIG00000006828	grk7a (ENSOSIG00000006829)
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000005347	ENSORLG00000028003	DPP9 (ENSORLG00000005325)	angptl4 (ENSORLG00000005296)	rps28 (ENSORLG00000029846)	ENSORLG00000005249	ENSORLG00000027141	gadd45aa (ENSORLG00000005244)	gng12a (ENSORLG00000028303)	wls (ENSORLG00000005229)	scinlb (ENSORLG00000005190)	mtf2 (ENSORLG00000005121) #18	dipk1aa (ENSORLG00000005089) #19	ENSORLG00000023032	RPL5 (ENSORLG00000005080) #20	GFI1 (ENSORLG00000005060) #22	rpap2 (ENSORLG00000005042) #23	glmna (ENSORLG00000004994) #24	cdc7 (ENSORLG00000004956) #30	HFM1 (ENSORLG00000026844) #31	znf644a (ENSORLG00000004909) #32	ENSORLG00000022567	ENSORLG00000028444	gtf2b (ENSORLG00000004899)	ENSORLG00000029433	PKN2 (ENSORLG00000004877)	ENSORLG00000023670	hs2st1a (ENSORLG00000026808)	selenof (ENSORLG00000004841)	ENSORLG00000022193	septin2 (ENSORLG00000004835)
Oryzias_b	ANCESTRAL SPECIES	57	ENSGT00390000016559	ENSGT00940000158174.b	ENSGT00940000159478.e	ENSGT00910000144227	ENSGT00940000164521.f	ENSGT00940000176935	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00940000166547	ENSGT00940000156181.B	ENSGT00940000153304.C	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000155387.c	ENSGT00940000166731.b
Indian medaka	MODERN SPECIES	7	ENSOMEG00000017280	ENSOMEG00000017265	DPP9 (ENSOMEG00000017202)	angptl4 (ENSOMEG00000017136)	ENSOMEG00000017117	rps28 (ENSOMEG00000017093)	ENSOMEG00000017078	gadd45aa (ENSOMEG00000017064)	gng12a (ENSOMEG00000017044)	wls (ENSOMEG00000017038)	scinlb (ENSOMEG00000017000)	ccdc18 (ENSOMEG00000016891) #16	mtf2 (ENSOMEG00000016832) #18	dipk1aa (ENSOMEG00000016775) #19	RPL5 (ENSOMEG00000016748) #20	GFI1 (ENSOMEG00000016722) #22	rpap2 (ENSOMEG00000016671) #23	cdc7 (ENSOMEG00000016606) #30	glmna (ENSOMEG00000016570) #24	HFM1 (ENSOMEG00000016474) #31	znf644a (ENSOMEG00000016360) #32	ENSOMEG00000016308	ENSOMEG00000016198	tyw3 (ENSOMEG00000016176)	imp3 (ENSOMEG00000016160)	slc35a3b (ENSOMEG00000016119)	FAM78B (ENSOMEG00000016068)	cmpk (ENSOMEG00000016042)	bcl6ab (ENSOMEG00000016018)	ENSOMEG00000015991	ENSOMEG00000015972
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000156166.a.i.a #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000156166.a.i.a #22
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT01030000234549.a.a.a.a.a.b.a.c.b	ENSGT01030000234549.a.a.a.a.a.b.a.c.a	ENSGT00940000166826	ENSGT00940000163827.a.b	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.q.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b #20	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT01060000248660	ENSGT00530000068748	ENSGT00940000159311.d.a.b.f	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098
Tongue sole	MODERN SPECIES	12	glula (ENSCSEG00000017908)	TMEM275 (ENSCSEG00000017904)	kncn (ENSCSEG00000017901)	gigyf2 (ENSCSEG00000017889)	ENSCSEG00000017879	GPR55 (ENSCSEG00000017876)	ENSCSEG00000017872	gadd45aa (ENSCSEG00000017865)	gng12a (ENSCSEG00000017859)	wls (ENSCSEG00000017829)	scinlb (ENSCSEG00000017805)	ccdc18 (ENSCSEG00000017782) #16	mtf2 (ENSCSEG00000017764) #18	dipk1aa (ENSCSEG00000017750) #19	RPL5 (ENSCSEG00000017733) #20	GFI1 (ENSCSEG00000017729) #22	rpap2 (ENSCSEG00000017702) #23	glmna (ENSCSEG00000017687) #24	cdc7 (ENSCSEG00000017683) #30	HFM1 (ENSCSEG00000017659) #31	znf644a (ENSCSEG00000017650) #32	ENSCSEG00000017642	ENSCSEG00000017638	gtf2b (ENSCSEG00000017617)	PKN2 (ENSCSEG00000017600)	hs2st1a (ENSCSEG00000017583)	selenof (ENSCSEG00000017574)	SOX14 (ENSCSEG00000017571)	septin2 (ENSCSEG00000017561)	stk25b (ENSCSEG00000017541)	ENSCSEG00000017533
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005011020	nsun4 (ENSMMDG00005011019)	dmbx1a (ENSMMDG00005011017)	slc6a22.2 (ENSMMDG00005011013)	slc6a22.2 (ENSMMDG00005010981)	ENSMMDG00005010970	slc6a22.2 (ENSMMDG00005010968)	gadd45aa (ENSMMDG00005010966)	GNG12 (ENSMMDG00005010963)	wls (ENSMMDG00005010936)	scinlb (ENSMMDG00005008618)	ccdc18 (ENSMMDG00005008590) #16	mtf2 (ENSMMDG00005008570) #18	dipk1aa (ENSMMDG00005008546) #19	RPL5 (ENSMMDG00005008438) #20	GFI1 (ENSMMDG00005008398) #22	rpap2 (ENSMMDG00005008387) #23	glmna (ENSMMDG00005008381) #24	ENSMMDG00005008376	cdc7 (ENSMMDG00005008375) #30	ENSMMDG00005008373 #31	ENSMMDG00005021951	ENSMMDG00005021948	ENSMMDG00005021944	gtf2b (ENSMMDG00005021922)	PKN2 (ENSMMDG00005018281)	hs2st1a (ENSMMDG00005018204)	selenof (ENSMMDG00005018202)	ENSMMDG00005018199	SOX14 (ENSMMDG00005018197)	septin2 (ENSMMDG00005017672)
Cod	MODERN SPECIES	21	ENSGMOG00000036118	ptger4c (ENSGMOG00000017031)	pif1 (ENSGMOG00000017035)	ENSGMOG00000017062	nsun4 (ENSGMOG00000017072)	dmbx1a (ENSGMOG00000037205)	gadd45aa (ENSGMOG00000017094)	ENSGMOG00000029275	wls (ENSGMOG00000017110)	scinlb (ENSGMOG00000017131)	ENSGMOG00000033960	ccdc18 (ENSGMOG00000031155) #16	mtf2 (ENSGMOG00000017230) #18	dipk1aa (ENSGMOG00000026823) #19	RPL5 (ENSGMOG00000017281) #20	GFI1 (ENSGMOG00000017295) #22	rpap2 (ENSGMOG00000017320) #23	glmna (ENSGMOG00000017364) #24	cdc7 (ENSGMOG00000017403) #30	ENSGMOG00000017436 #31	ENSGMOG00000022167 #32	ENSGMOG00000027283	ENSGMOG00000019807	gtf2b (ENSGMOG00000017538)	PKN2 (ENSGMOG00000017550)	hs2st1a (ENSGMOG00000028838)	selenof (ENSGMOG00000017613)	ENSGMOG00000017622	ENSGMOG00000019808	septin2 (ENSGMOG00000017631)	stk25b (ENSGMOG00000017656)
Protacanthopterygii	ANCESTRAL SPECIES	60	ENSGT00940000157285.e	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.b.b #20	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822 #31	ENSGT00940000158258.f #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00940000158655.f	ENSGT00940000160749.a.b	ENSGT00940000155098	ENSGT00940000153476.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	76	ENSGT00390000007336.a.b.d	ENSGT00940000154930.db.s	ENSGT00940000157285.e.b	ENSGT00950000182993.B.a.c.c	ENSGT01050000244902.a.a.b.c	ENSGT00530000063561	ENSGT00960000186850.b.a	ENSGT00940000155505.a.a.d	ENSGT00950000182964.a.a.g.b.c.a	ENSGT01100000263497.E.b.r.a.b	ENSGT00390000005897.j.e	ENSGT00940000164612.a.e	ENSGT00950000183180.b.z #18	ENSGT00390000006452.b.b.h.d #19	ENSGT00950000183210.g.b.b.a #20	ENSGT00940000156166.a.i.a.a #22	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822.o #31	ENSGT00940000158258.f.c #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b.d	ENSGT00390000006671.db	ENSGT00940000154339.e.a	ENSGT00530000063408.B.c.a.a	ENSGT00940000154284.a.s	ENSGT00940000158655.f.c.a	ENSGT00940000160749.a.b	ENSGT00940000155098.b	ENSGT00940000153476.a	ENSGT01090000260100.B.b.b
Huchen	MODERN SPECIES	1312												ENSHHUG00000052389	ENSHHUG00000052390 #18	dipk1aa (ENSHHUG00000052392) #19	RPL5 (ENSHHUG00000052394) #20	GFI1 (ENSHHUG00000052447) #22	glmna (ENSHHUG00000052448) #24	cdc7 (ENSHHUG00000052451) #30	HFM1 (ENSHHUG00000052452) #31	ENSHHUG00000052454	ENSHHUG00000052455	ENSHHUG00000052457	gtf2b (ENSHHUG00000052458)	ENSHHUG00000052466	PKN2 (ENSHHUG00000052468)	hs2st1a (ENSHHUG00000052482)	selenof (ENSHHUG00000052491)	CLDN18 (ENSHHUG00000052494)	SOX14 (ENSHHUG00000052496)	septin2 (ENSHHUG00000052499)	stk25b (ENSHHUG00000052514)
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00390000007336.a.b.d	ENSGT00940000154930.db.s	ENSGT00940000157285.e.b	ENSGT00950000182993.B.a.c.c	ENSGT01050000244902.a.a.b.c	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000155505.a.a.d	ENSGT00950000182964.a.a.g.b.c.a	ENSGT01100000263497.E.b.r.a.b	ENSGT00390000005897.j.e	ENSGT00940000164612.a.e	ENSGT00950000183180.b.z #18	ENSGT00390000006452.b.b.h.d #19	ENSGT00950000183210.g.b.b.a #20	ENSGT00940000156166.a.i.a.a #22	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822.o #31	ENSGT00940000158258.f.c #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b.d	ENSGT00390000006671.db	ENSGT00940000154339.e.a	ENSGT00530000063408.B.c.a.a	ENSGT00940000154284.a.s	ENSGT00940000158655.f.c.a	ENSGT00940000160749.a.b	ENSGT00940000155098.b	ENSGT00940000153476.a	ENSGT01090000260100.B.b.b
Salmo	ANCESTRAL SPECIES	5	ENSGT00390000007336.a.b.d	ENSGT00940000154930.db.s	ENSGT00940000157285.e.b	ENSGT00950000182993.B.a.c.c	ENSGT01050000244902.a.a.b.c	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000155505.a.a.d	ENSGT00950000182964.a.a.g.b.c.a	ENSGT01100000263497.E.b.r.a.b	ENSGT00390000005897.j.e	ENSGT00940000164612.a.e	ENSGT00950000183180.b.z #18	ENSGT00390000006452.b.b.h.d #19	ENSGT00950000183210.g.b.b.a #20	ENSGT00940000156166.a.i.a.a #22	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822.o #31	ENSGT00940000158258.f.c #32	ENSGT01060000248660.e.b	ENSGT00530000068748	ENSGT00940000159311.d.a.b.d	ENSGT00390000006671.db	ENSGT00940000154339.e.a	ENSGT00530000063408.B.c.a.a	ENSGT00940000154284.a.s	ENSGT00940000158655.f.d	ENSGT00940000160749.a.b.k.b	ENSGT00940000155098.b	ENSGT00940000153476.a
River trout	MODERN SPECIES	24	ABHD8 (ENSSTUG00000048554)	ENSSTUG00000048568	st3gal3b (ENSSTUG00000048612)	ENSSTUG00000048677	ptger4c (ENSSTUG00000048685)	pif1 (ENSSTUG00000048697)	UQCRHL (ENSSTUG00000048732)	dmbx1a (ENSSTUG00000048736)	gadd45aa (ENSSTUG00000048740)	gng12a (ENSSTUG00000048751)	wls (ENSSTUG00000048761)	scinlb (ENSSTUG00000048828)	mtf2 (ENSSTUG00000048889) #18	dipk1aa (ENSSTUG00000048925) #19	RPL5 (ENSSTUG00000048930) #20	GFI1 (ENSSTUG00000024986) #22	glmna (ENSSTUG00000024995) #24	cdc7 (ENSSTUG00000025041) #30	HFM1 (ENSSTUG00000025088) #31	znf644a (ENSSTUG00000025102) #32	ENSSTUG00000025136	ENSSTUG00000025160	gtf2b (ENSSTUG00000025175)	PKN2 (ENSSTUG00000025290)	hs2st1a (ENSSTUG00000025745)	selenof (ENSSTUG00000025773)	CLDN18 (ENSSTUG00000025787)	SOX14 (ENSSTUG00000025791)	septin2 (ENSSTUG00000025808)	stk25b (ENSSTUG00000026468)	bokb (ENSSTUG00000027055)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000075427	st3gal3b (ENSSSAG00000071741)	ENSSSAG00000111229	ptger4c (ENSSSAG00000075125)	pif1 (ENSSSAG00000074855)	ENSSSAG00000074844	dmbx1a (ENSSSAG00000095873)	GA45A (ENSSSAG00000074821)	gng12a (ENSSSAG00000097117)	gp177 (ENSSSAG00000074799)	ENSSSAG00000088058	scinlb (ENSSSAG00000074463)	mtf2 (ENSSSAG00000074320) #18	dipk1aa (ENSSSAG00000074308) #19	RPL5 (ENSSSAG00000074247) #20	GFI1 (ENSSSAG00000074234) #22	glmn (ENSSSAG00000074229) #24	cdc7 (ENSSSAG00000074223) #30	ENSSSAG00000102062	ENSSSAG00000074220 #31	ENSSSAG00000074216 #32	ENSSSAG00000108164	LRC8D (ENSSSAG00000074215)	gtf2b (ENSSSAG00000074213)	PKN2 (ENSSSAG00000069649)	hs2st1a (ENSSSAG00000093175)	selenof (ENSSSAG00000069514)	ENSSSAG00000069511	ENSSSAG00000069509	septin2 (ENSSSAG00000069464)	stk25b (ENSSSAG00000069307)
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00390000007336.a.b.d	ENSGT00940000154930.db.s	ENSGT00940000157285.e.b	ENSGT00950000182993.B.a.c.c	ENSGT01050000244902.a.a.b.c	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000155505.a.a.d	ENSGT00950000182964.a.a.g.b.c.a	ENSGT01100000263497.E.b.r.a.b	ENSGT00390000005897.j.e	ENSGT00940000164612.a.e	ENSGT00950000183180.b.z #18	ENSGT00390000006452.b.b.h.d #19	ENSGT00950000183210.g.b.b.a #20	ENSGT00940000156166.a.i.a.a #22	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822.o #31	ENSGT00940000158258.f.c #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b.d	ENSGT00390000006671.db	ENSGT00940000154339.e.a	ENSGT00530000063408.B.c.a.a	ENSGT00940000154284.a.s	ENSGT00940000158655.f.c.a	ENSGT00940000160749.a.b	ENSGT00940000155098.b	ENSGT00940000153476.a	ENSGT01090000260100.B.b.b
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000075607	ENSOMYG00000077449	ptger4c (ENSOMYG00000041826)	pif1 (ENSOMYG00000041834)	ENSOMYG00000041866	dmbx1a (ENSOMYG00000041871)	gadd45aa (ENSOMYG00000041875)	gng12a (ENSOMYG00000041881)	ENSOMYG00000070186	wls (ENSOMYG00000041885)	ENSOMYG00000057725	scinlb (ENSOMYG00000041910)	mtf2 (ENSOMYG00000041934) #18	dipk1aa (ENSOMYG00000041939) #19	RPL5 (ENSOMYG00000041957) #20	GFI1 (ENSOMYG00000042006) #22	glmna (ENSOMYG00000042017) #24	cdc7 (ENSOMYG00000042030) #30	ENSOMYG00000042039 #31	znf644a (ENSOMYG00000042066) #32	ENSOMYG00000042085	gtf2b (ENSOMYG00000042109)	PKN2 (ENSOMYG00000042438)	hs2st1a (ENSOMYG00000044965)	ENSOMYG00000050582	ENSOMYG00000044974	ENSOMYG00000044976	septin2 (ENSOMYG00000044985)	stk25b (ENSOMYG00000045006)	ENSOMYG00000058568	bokb (ENSOMYG00000045038)
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00390000007336.a.b.d	ENSGT00940000154930.db.s	ENSGT00940000157285.e.b	ENSGT00950000182993.B.a.c.c	ENSGT01050000244902.a.a.b.c	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000155505.a.a.d	ENSGT00950000182964.a.a.g.b.c.a	ENSGT01100000263497.E.b.r.a.b	ENSGT00390000005897.j.e	ENSGT00940000164612.a.e	ENSGT00950000183180.b.z #18	ENSGT00390000006452.b.b.h.d #19	ENSGT00950000183210.g.b.b.a #20	ENSGT00940000156166.a.i.a.a #22	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00550000074822.o #31	ENSGT00940000158258.f.c #32	ENSGT00530000068748	ENSGT00940000159311.d.a.b.d	ENSGT00390000006671.db	ENSGT00940000154339.e.a	ENSGT00530000063408.B.c.a.a	ENSGT00940000154284.a.s	ENSGT00940000158655.f.c.a	ENSGT00940000160749.a.b	ENSGT00940000155098.b	ENSGT00940000153476.a	ENSGT01090000260100.B.b.b
Chinook salmon	MODERN SPECIES	20	ABHD8 (ENSOTSG00005023402)	ENSOTSG00005023409	st3gal3b (ENSOTSG00005023461)	ENSOTSG00005024576	ptger4c (ENSOTSG00005024577)	pif1 (ENSOTSG00005024579)	ENSOTSG00005024619	dmbx1a (ENSOTSG00005024620)	gadd45aa (ENSOTSG00005024621)	gng12a (ENSOTSG00005024622)	wls (ENSOTSG00005024623)	scinlb (ENSOTSG00005024641)	mtf2 (ENSOTSG00005024695) #18	dipk1aa (ENSOTSG00005024697) #19	RPL5 (ENSOTSG00005024698) #20	GFI1 (ENSOTSG00005024745) #22	glmna (ENSOTSG00005024747) #24	cdc7 (ENSOTSG00005024749) #30	HFM1 (ENSOTSG00005024752) #31	znf644a (ENSOTSG00005031939) #32	ENSOTSG00005031979	ENSOTSG00005031981	gtf2b (ENSOTSG00005031982)	PKN2 (ENSOTSG00005031999)	hs2st1a (ENSOTSG00005039051)	selenof (ENSOTSG00005039052)	CLDN18 (ENSOTSG00005039055)	SOX14 (ENSOTSG00005039058)	septin2 (ENSOTSG00005039064)	stk25b (ENSOTSG00005039123)	bokb (ENSOTSG00005041256)
Coho salmon	MODERN SPECIES	19	st3gal3b (ENSOKIG00005018581)	ENSOKIG00005018804	ENSOKIG00005018821	ptger4c (ENSOKIG00005018830)	pif1 (ENSOKIG00005018843)	ENSOKIG00005018987	dmbx1a (ENSOKIG00005019034)	gadd45aa (ENSOKIG00005019058)	gng12a (ENSOKIG00005019086)	wls (ENSOKIG00005019128)	ENSOKIG00005019232	scinlb (ENSOKIG00005019250)	mtf2 (ENSOKIG00005019335) #18	dipk1aa (ENSOKIG00005019352) #19	RPL5 (ENSOKIG00005019365) #20	GFI1 (ENSOKIG00005019471) #22	glmna (ENSOKIG00005019489) #24	cdc7 (ENSOKIG00005019533) #30	HFM1 (ENSOKIG00005019567) #31	znf644a (ENSOKIG00005019631) #32	ENSOKIG00005019663	ENSOKIG00005019678	gtf2b (ENSOKIG00005019693)	PKN2 (ENSOKIG00005019966)	hs2st1a (ENSOKIG00005025954)	selenof (ENSOKIG00005025978)	CLDN18 (ENSOKIG00005025986)	SOX14 (ENSOKIG00005025998)	septin2 (ENSOKIG00005026035)	stk25b (ENSOKIG00005026490)	bokb (ENSOKIG00005027714)
Salmoninae	ANCESTRAL SPECIES	83	ENSGT00940000154930.db.t	ENSGT00940000157285.e.a	ENSGT00950000182993.B.a.c.d	ENSGT01050000244902.a.a.b.d	ENSGT00990000211483	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.c	ENSGT00950000182964.a.a.g.b.c.b	ENSGT01100000263497.E.b.r.a.a	ENSGT00390000005897.j.f	ENSGT00940000164612.a.f	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.y #18	ENSGT00390000006452.b.b.h.c #19	ENSGT00950000183210.g.b.b.b #20	ENSGT00940000156166.a.i.a.b #22	ENSGT00390000017965 #23	ENSGT00550000074822.p #31	ENSGT00940000158258.f.d #32	ENSGT01060000248660	ENSGT00940000159311.d.a.b.c	ENSGT00390000006671.eb	ENSGT00940000154339.e.b	ENSGT00530000063408.B.c.a.b	ENSGT00940000154284.a.t	ENSGT00940000158655.f.c.b	ENSGT01100000263483.F.b.a.a.e	ENSGT01100000263483.B.e.a	ENSGT00940000155098.a
Huchen	MODERN SPECIES	1751							gadd45aa (ENSHHUG00000047689)	gng12a (ENSHHUG00000047695)	wls (ENSHHUG00000047700)	scinlb (ENSHHUG00000047722)	ccdc18 (ENSHHUG00000047961) #16	mtf2 (ENSHHUG00000047971) #18	dipk1aa (ENSHHUG00000047991) #19	RPL5 (ENSHHUG00000048000) #20	ENSHHUG00000048091	GFI1 (ENSHHUG00000048093) #22	ENSHHUG00000048095 #23
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000154930.db.t	ENSGT00940000157285.e.a.a.a	ENSGT00950000182993.B.a.c.d	ENSGT01050000244902.a.a.b.d	ENSGT00990000211483	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.c	ENSGT00950000182964.a.a.g.b.c.b	ENSGT01100000263497.E.b.r.a.a	ENSGT00390000005897.j.f	ENSGT00940000164612.a.f	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.y #18	ENSGT00390000006452.b.b.h.c #19	ENSGT00950000183210.g.b.b.b #20	ENSGT00940000156166.a.i.a.b #22	ENSGT00390000017965 #23	ENSGT00550000074822.p #31	ENSGT00940000158258.f.d #32	ENSGT01060000248660.e.a	ENSGT00940000159311.d.a.b.c	ENSGT00390000006671.eb	ENSGT00940000154339.e.b	ENSGT00530000063408.B.c.a.b	ENSGT00940000154284.a.t	ENSGT00940000158655.f.c.b	ENSGT01100000263483.F.b.a.a.e	ENSGT01100000263483.B.e.a	ENSGT00940000155098.a	ENSGT01090000260100.B.b.a	ENSGT00940000158447.ab
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000154930.db.t	ENSGT00940000157285.e.a.a.a	ENSGT00950000182993.B.a.c.d	ENSGT01050000244902.a.a.b.d	ENSGT00990000211483	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.c	ENSGT00950000182964.a.a.g.b.c.b	ENSGT01100000263497.E.b.r.a.a	ENSGT00390000005897.j.f	ENSGT00940000164612.a.f	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.y #18	ENSGT00390000006452.b.b.h.c #19	ENSGT00950000183210.g.b.b.b #20	ENSGT00940000156166.a.i.a.b #22	ENSGT00390000017965 #23	ENSGT00550000074822.p #31	ENSGT00940000158258.f.d #32	ENSGT01060000248660.e.a	ENSGT00940000159311.d.a.b.c	ENSGT00390000006671.eb	ENSGT00940000154339.e.b	ENSGT00530000063408.B.c.a.b	ENSGT00940000154284.a.t	ENSGT00940000160749.a.b.k.a	ENSGT00940000155098.a	ENSGT01090000260100.B.b.a	ENSGT00940000158447.ab	ENSGT00940000153241.B.d	ENSGT00940000156474.a.a.a.a.b
River trout	MODERN SPECIES	13	st3gal3b (ENSSTUG00000039357)	ENSSTUG00000039352	ENSSTUG00000039350	ptger4c (ENSSTUG00000039340)	ENSSTUG00000039336	nsun4 (ENSSTUG00000039324)	dmbx1a (ENSSTUG00000039320)	gadd45aa (ENSSTUG00000039313)	gng12a (ENSSTUG00000039288)	wls (ENSSTUG00000039153)	scinlb (ENSSTUG00000039121)	ccdc18 (ENSSTUG00000039102) #16	mtf2 (ENSSTUG00000038640) #18	dipk1aa (ENSSTUG00000038604) #19	RPL5 (ENSSTUG00000038499) #20	GFI1 (ENSSTUG00000038491) #22	rpap2 (ENSSTUG00000038481) #23	HFM1 (ENSSTUG00000038420) #31	znf644a (ENSSTUG00000038383) #32	ENSSTUG00000038377	gtf2b (ENSSTUG00000038326)	PKN2 (ENSSTUG00000037748)	hs2st1a (ENSSTUG00000037723)	selenof (ENSSTUG00000037715)	septin2 (ENSSTUG00000036877)	bokb (ENSSTUG00000036854)	thap4 (ENSSTUG00000036850)	agxtb (ENSSTUG00000036776)	KIF1A (ENSSTUG00000035961)	ENSSTUG00000035897	SLCO2A1 (ENSSTUG00000035890)
Atlantic salmon	MODERN SPECIES	5	DDA1 (ENSSSAG00000082914)	ENSSSAG00000071763	ENSSSAG00000120121	ENSSSAG00000071725	ENSSSAG00000119035	ptger4c (ENSSSAG00000098379)	nsun4 (ENSSSAG00000071711)	dmbx1a (ENSSSAG00000098889)	GA45A (ENSSSAG00000071706)	gng12a (ENSSSAG00000071696)	GP177 (ENSSSAG00000071690)	ccdc18 (ENSSSAG00000070611) #16	mtf2 (ENSSSAG00000069916) #18	dipk1aa (ENSSSAG00000082991) #19	RPL5 (ENSSSAG00000069558) #20	GFI1 (ENSSSAG00000069410) #22	rpap2 (ENSSSAG00000069402) #23	ENSSSAG00000069375 #31	ENSSSAG00000069367 #32	ENSSSAG00000069364	ENSSSAG00000069363	gtf2b (ENSSSAG00000069355)	ENSSSAG00000121653	PKN2 (ENSSSAG00000053981)	ENSSSAG00000103237	hs2st (ENSSSAG00000053718)	selenof (ENSSSAG00000053710)	ENSSSAG00000053699	ENSSSAG00000053695	ENSSSAG00000084809	septin2 (ENSSSAG00000053676)
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00390000007336.a.b.c	ENSGT00940000154930.db.t	ENSGT00940000157285.e.a.a.a	ENSGT00950000182993.B.a.c.d	ENSGT01050000244902.a.a.b.d	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.c	ENSGT00950000182964.a.a.g.b.c.b	ENSGT01100000263497.E.b.r.a.a	ENSGT00390000005897.j.f	ENSGT00940000164612.a.f	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.y #18	ENSGT00390000006452.b.b.h.c #19	ENSGT00950000183210.g.b.b.b #20	ENSGT00940000156166.a.i.a.b #22	ENSGT00390000017965 #23	ENSGT00550000074822.p #31	ENSGT00940000158258.f.d #32	ENSGT01060000248660.e.a	ENSGT00940000159311.d.a.b.c	ENSGT00390000006671.eb	ENSGT00940000154339.e.b	ENSGT00530000063408.B.c.a.b	ENSGT00940000154284.a.t	ENSGT00940000158655.f.c.b	ENSGT00940000155098.a	ENSGT01090000260100.B.b.a	ENSGT00940000153241.B.d	ENSGT00940000156474.a.a.a.a.b	ENSGT00940000156970.c.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	29	ABHD8 (ENSOMYG00000011146)	ENSOMYG00000011132	ENSOMYG00000011080	ENSOMYG00000011045	ptger4c (ENSOMYG00000063927)	nsun4 (ENSOMYG00000011004)	dmbx1a (ENSOMYG00000010976)	gadd45aa (ENSOMYG00000010965)	gng12a (ENSOMYG00000010949)	wls (ENSOMYG00000010710)	scinlb (ENSOMYG00000010616)	ccdc18 (ENSOMYG00000010602) #16	mtf2 (ENSOMYG00000010560) #18	dipk1aa (ENSOMYG00000068261) #19	RPL5 (ENSOMYG00000010422) #20	GFI1 (ENSOMYG00000010340) #22	GFI1 (ENSOMYG00000060287) #22	rpap2 (ENSOMYG00000010283) #23	ENSOMYG00000010165 #31	ENSOMYG00000064160 #32	ENSOMYG00000010108	gtf2b (ENSOMYG00000010047)	PKN2 (ENSOMYG00000009735)	hs2st1a (ENSOMYG00000009479)	ENSOMYG00000050404	ENSOMYG00000055312	ENSOMYG00000009064	bokb (ENSOMYG00000008796)	agxtb (ENSOMYG00000008553)	ENSOMYG00000008080	ENSOMYG00000068255
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000011132	ENSOMYG00000011080	ENSOMYG00000011045	ptger4c (ENSOMYG00000063927)	nsun4 (ENSOMYG00000011004)	dmbx1a (ENSOMYG00000010976)	gadd45aa (ENSOMYG00000010965)	gng12a (ENSOMYG00000010949)	wls (ENSOMYG00000010710)	scinlb (ENSOMYG00000010616)	ccdc18 (ENSOMYG00000010602) #16	mtf2 (ENSOMYG00000010560) #18	dipk1aa (ENSOMYG00000068261) #19	RPL5 (ENSOMYG00000010422) #20	GFI1 (ENSOMYG00000010340) #22	GFI1 (ENSOMYG00000060287) #22	rpap2 (ENSOMYG00000010283) #23	ENSOMYG00000010165 #31	ENSOMYG00000064160 #32	ENSOMYG00000010108	gtf2b (ENSOMYG00000010047)	PKN2 (ENSOMYG00000009735)	hs2st1a (ENSOMYG00000009479)	ENSOMYG00000050404	ENSOMYG00000055312	ENSOMYG00000009064	bokb (ENSOMYG00000008796)	agxtb (ENSOMYG00000008553)	ENSOMYG00000008080	ENSOMYG00000068255	ENSOMYG00000007423
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00390000007336.a.b.c	ENSGT00940000154930.db.t	ENSGT00940000157285.e.a.a.a	ENSGT00950000182993.B.a.c.d	ENSGT01050000244902.a.a.b.d	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.c	ENSGT00950000182964.a.a.g.b.c.b	ENSGT01100000263497.E.b.r.a.a	ENSGT00390000005897.j.f	ENSGT00940000164612.a.f	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.y #18	ENSGT00390000006452.b.b.h.c #19	ENSGT00950000183210.g.b.b.b #20	ENSGT00940000156166.a.i.a.b #22	ENSGT00390000017965 #23	ENSGT00550000074822.p #31	ENSGT00940000158258.f.d #32	ENSGT01060000248660.e.a	ENSGT00940000159311.d.a.b.c	ENSGT00390000006671.eb	ENSGT00940000154339.e.b	ENSGT00530000063408.B.c.a.b	ENSGT00940000154284.a.t	ENSGT00940000158655.f.c.b	ENSGT00940000155098.a	ENSGT01090000260100.B.b.a	ENSGT01010000229981	ENSGT00940000153241.B.d	ENSGT00940000156474.a.a.a.a.b
Coho salmon	MODERN SPECIES	23	ENSOKIG00005028437	st3gal3b (ENSOKIG00005028224)	ENSOKIG00005028205	ptger4c (ENSOKIG00005028177)	nsun4 (ENSOKIG00005028155)	dmbx1a (ENSOKIG00005028135)	gadd45aa (ENSOKIG00005028125)	gng12a (ENSOKIG00005028108)	wls (ENSOKIG00005027937)	ENSOKIG00005027912	scinlb (ENSOKIG00005027802)	ccdc18 (ENSOKIG00005027741) #16	mtf2 (ENSOKIG00005027690) #18	dipk1aa (ENSOKIG00005027673) #19	RPL5 (ENSOKIG00005027321) #20	GFI1 (ENSOKIG00005027259) #22	rpap2 (ENSOKIG00005027250) #23	HFM1 (ENSOKIG00005027229) #31	ENSOKIG00005027210	ENSOKIG00005027200	gtf2b (ENSOKIG00005027130)	PKN2 (ENSOKIG00005021177)	hs2st1a (ENSOKIG00005020841)	ENSOKIG00005020823	selenof (ENSOKIG00005028764)	ENSOKIG00005028743	SEPTIN2 (ENSOKIG00005028545)	bokb (ENSOKIG00005028516)	ENSOKIG00005028489	agxtb (ENSOKIG00005027990)	KIF1A (ENSOKIG00005027215)
Northern pike	MODERN SPECIES	2	st3gal3b (ENSELUG00000019625)	ENSELUG00000019485	ptger4c (ENSELUG00000019480)	pif1 (ENSELUG00000019471)	ENSELUG00000000829	nsun4 (ENSELUG00000019409)	dmbx1a (ENSELUG00000019381)	gadd45aa (ENSELUG00000019370)	gng12a (ENSELUG00000033808)	wls (ENSELUG00000019316)	scinlb (ENSELUG00000019263)	ccdc18 (ENSELUG00000001471) #16	mtf2 (ENSELUG00000019181) #18	dipk1aa (ENSELUG00000019114) #19	RPL5 (ENSELUG00000019075) #20	GFI1 (ENSELUG00000019033) #22	rpap2 (ENSELUG00000019016) #23	glmna (ENSELUG00000018990) #24	cdc7 (ENSELUG00000018969) #30	ENSELUG00000032536	HFM1 (ENSELUG00000018944) #31	ENSELUG00000034071	ENSELUG00000029638	gtf2b (ENSELUG00000018769)	PKN2 (ENSELUG00000018727)	hs2st1a (ENSELUG00000018617)	selenof (ENSELUG00000018562)	CLDN18 (ENSELUG00000018538)	SOX14 (ENSELUG00000018524)	septin2 (ENSELUG00000018507)	stk25b (ENSELUG00000001056)
Otomorpha	ANCESTRAL SPECIES	581															ENSGT00940000153846.a.a.c #21	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30
Otophysi	ANCESTRAL SPECIES	5	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000161095	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e
Characiphysae	ANCESTRAL SPECIES	55	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000165010	ENSGT00940000155618	ENSGT00940000161095	ENSGT00940000154882	ENSGT00940000153304.C
Channel catfish	MODERN SPECIES	12	ENSIPUG00000014054	ptger4c (ENSIPUG00000014040)	pif1 (ENSIPUG00000013991)	ENSIPUG00000013973	nsun4 (ENSIPUG00000013963)	dmbx1 (ENSIPUG00000013960)	GADD45A (ENSIPUG00000013944)	gng12a (ENSIPUG00000013933)	ENSIPUG00000013901	wls (ENSIPUG00000013849)	scinlb (ENSIPUG00000013768)	ccdc18 (ENSIPUG00000013633) #16	MTF2 (ENSIPUG00000013556) #18	fam69a (ENSIPUG00000013445) #19	rpl5a (ENSIPUG00000013466) #20	GFI1 (ENSIPUG00000013414) #22	rpap2 (ENSIPUG00000013375) #23	glmn (ENSIPUG00000013328) #24	cdc7 (ENSIPUG00000013306) #30	tceanc2 (ENSIPUG00000013259)	CDCP2 (ENSIPUG00000013255)	ENSIPUG00000013240	mrpl37 (ENSIPUG00000013212)	ssbp3 (ENSIPUG00000013089)	acot11a (ENSIPUG00000013010)	fam151a (ENSIPUG00000012985)	ENSIPUG00000012968	cryz (ENSIPUG00000012918)	tyw3 (ENSIPUG00000012907)	LHX8 (ENSIPUG00000012858)	SLC44A5 (ENSIPUG00000012833)
Characiphysae_b	ANCESTRAL SPECIES	48	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000161095	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e
Characoidei	ANCESTRAL SPECIES	58	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000161095	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e
Red-bellied piranha	MODERN SPECIES	199							gadd45aa (ENSPNAG00000027296)	gng12a (ENSPNAG00000004211)	wls (ENSPNAG00000006324)	scinlb (ENSPNAG00000005816)	ccdc18 (ENSPNAG00000007099) #16	mtf2 (ENSPNAG00000027895) #18	dipk1aa (ENSPNAG00000027914) #19	rpl5a (ENSPNAG00000005904) #20	ENSPNAG00000027968 #21	GFI1 (ENSPNAG00000028014) #22	rpap2 (ENSPNAG00000028125) #23	glmna (ENSPNAG00000005771) #24	cdc7 (ENSPNAG00000028164) #30	tceanc2 (ENSPNAG00000028183)	CDCP2 (ENSPNAG00000028190)	ENSPNAG00000005730	mrpl37 (ENSPNAG00000028240)	ssbp3a (ENSPNAG00000028295)	acot11a (ENSPNAG00000028358)	fam151a (ENSPNAG00000028368)	ENSPNAG00000028388	cryz (ENSPNAG00000028423)	tyw3 (ENSPNAG00000028431)	lhx8a (ENSPNAG00000028456)	ENSPNAG00000005773
Mexicana tetra	MODERN SPECIES	8								ENSAMXG00000032931	wls (ENSAMXG00000041966)	scinlb (ENSAMXG00000006757)	ccdc18 (ENSAMXG00000035531) #16	mtf2 (ENSAMXG00000006703) #18	dipk1aa (ENSAMXG00000006694) #19	rpl5a (ENSAMXG00000006688) #20	ENSAMXG00000006677 #21	GFI1 (ENSAMXG00000006669) #22	rpap2 (ENSAMXG00000042520) #23	glmna (ENSAMXG00000029057) #24	cdc7 (ENSAMXG00000006619) #30	tceanc2 (ENSAMXG00000029506)	CDCP2 (ENSAMXG00000006599)	mrpl37 (ENSAMXG00000032982)	ssbp3a (ENSAMXG00000006552)	acot11a (ENSAMXG00000006545)	fam151a (ENSAMXG00000030144)	ENSAMXG00000029539	cryz (ENSAMXG00000006523)	tyw3 (ENSAMXG00000039965)	lhx8a (ENSAMXG00000007793)	SLC44A5 (ENSAMXG00000032470)	sdr16c5a (ENSAMXG00000031928)
Electric eel	MODERN SPECIES	21	st3gal3b (ENSEEEG00000012110)	ENSEEEG00000012104	ptger4c (ENSEEEG00000012102)	pif1 (ENSEEEG00000012098)	nsun4 (ENSEEEG00000012082)	dmbx1a (ENSEEEG00000012081)	gadd45aa (ENSEEEG00000012080)	gng12a (ENSEEEG00000012078)	wls (ENSEEEG00000012066)	scinlb (ENSEEEG00000011666)	mtf2 (ENSEEEG00000011642) #18	dipk1aa (ENSEEEG00000011633) #19	rpl5a (ENSEEEG00000011452) #20	ENSEEEG00000011447	ENSEEEG00000011446 #21	GFI1 (ENSEEEG00000011445) #22	rpap2 (ENSEEEG00000011444) #23	glmna (ENSEEEG00000011443) #24	cdc7 (ENSEEEG00000011427) #30	tceanc2 (ENSEEEG00000011425)	CDCP2 (ENSEEEG00000011422)	mrpl37 (ENSEEEG00000011418)	ssbp3a (ENSEEEG00000011359)	acot11a (ENSEEEG00000011297)	ENSEEEG00000011285	fam151a (ENSEEEG00000011283)	ENSEEEG00000011281	cryz (ENSEEEG00000011278)	tyw3 (ENSEEEG00000011277)	lhx8a (ENSEEEG00000011274)	SLC44A5 (ENSEEEG00000011269)
Cyprinoidei	ANCESTRAL SPECIES	21	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000168333	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e	ENSGT00940000156731.q.b
Cyprininae	ANCESTRAL SPECIES	173	ENSGT00950000182993.B.a.c.a	ENSGT01050000244902.a.a.b.e	ENSGT00530000063561.c	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.b	ENSGT00950000182964.a.a.g.b.e	ENSGT01100000263497.E.b.r.a.c.a	ENSGT00390000005897.j	ENSGT00940000164612.a.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.w #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b.a #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000168333.d	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011.a.a.a #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A
Cyprininae_a	ANCESTRAL SPECIES	4	ENSGT00530000063561.c	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a.b	ENSGT00950000182964.a.a.g.b.e	ENSGT01100000263497.E.b.r.a.c.a	ENSGT00390000005897.j.g	ENSGT01100000263497.E.b.r.a.d	ENSGT00390000005897.j.h	ENSGT00940000164612.a.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b.w #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a.b.a #20	ENSGT00940000153846.a.a.c #21	ENSGT00940000168333.d	ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011.a.a.a #30	ENSGT00390000014384	ENSGT00940000158291	ENSGT00390000000867	ENSGT00950000183049.B.w	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000165601	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A
Golden-line barbel	MODERN SPECIES	108					pif1 (ENSSGRG00000054785)	dmbx1a (ENSSGRG00000054783)	gng12a (ENSSGRG00000054782)	wls (ENSSGRG00000054777)	scinlb (ENSSGRG00000054714)	ccdc18 (ENSSGRG00000054695) #16	mtf2 (ENSSGRG00000054674) #18	dipk1aa (ENSSGRG00000054669) #19	rpl5a (ENSSGRG00000054631) #20	ENSSGRG00000054615 #21	gfi1aa (ENSSGRG00000054612)	GFI1 (ENSSGRG00000054613) #22	rpap2 (ENSSGRG00000054611) #23	glmna (ENSSGRG00000054610) #24	cdc7 (ENSSGRG00000054609) #30	tceanc2 (ENSSGRG00000054608)	ENSSGRG00000054607	ENSSGRG00000054606	mrpl37 (ENSSGRG00000054605)	ssbp3a (ENSSGRG00000054585)	acot11a (ENSSGRG00000054571)	fam151a (ENSSGRG00000054564)	ENSSGRG00000054562	cryz (ENSSGRG00000054536)	tyw3 (ENSSGRG00000054533)	ENSSGRG00000054532	lhx8a (ENSSGRG00000054531)
Clupeiformes	ANCESTRAL SPECIES	633																ENSGT00940000156166.a.i.a #22	ENSGT00390000017965 #23	ENSGT00390000018446.b #24	ENSGT00550000075011 #30
Atlantic herring	MODERN SPECIES	14	ATR (ENSCHAG00000017869)	GNAL (ENSCHAG00000017386)	ttpa (ENSCHAG00000017270)	ENSCHAG00000017212	CHD7 (ENSCHAG00000014841)	rab2a (ENSCHAG00000014728)	ca8 (ENSCHAG00000014697)	tox (ENSCHAG00000014688)	cyp7a1 (ENSCHAG00000014668)	fam110b (ENSCHAG00000014657)	ENSCHAG00000014652	ENSCHAG00000014638 #32	gtf2b (ENSCHAG00000014515)	wls (ENSCHAG00000013961)	mtf2 (ENSCHAG00000013616) #18	ENSCHAG00000013593 #22	rpap2 (ENSCHAG00000013576) #23	ENSCHAG00000009154	sdr16c5a (ENSCHAG00000009055)	penka (ENSCHAG00000009045)	bpnt2 (ENSCHAG00000009017)	ENSCHAG00000008274
Clupeocephala	ANCESTRAL SPECIES	44	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00660000095605.e	ENSGT00390000010047.g.b	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.r.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000155827
Euteleosteomorpha	ANCESTRAL SPECIES	23	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00660000095605.e	ENSGT00390000010047.g.b	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.r.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00900000141059
Acanthomorphata	ANCESTRAL SPECIES	21	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00990000204408	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00520000055955.n	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Orange clownfish	MODERN SPECIES	11	med8 (ENSAPEG00000023489)	ENSAPEG00000023498	pbx1b (ENSAPEG00000023530)	glulb (ENSAPEG00000023552)	ENSAPEG00000023562	gadd45ab (ENSAPEG00000023576)	GNG12 (ENSAPEG00000023584)	WLS (ENSAPEG00000023597)	dr1 (ENSAPEG00000023674) #15	zgc:109982 (ENSAPEG00000023687)	scinla (ENSAPEG00000023700)	ENSAPEG00000023719 #16	DIPK1A (ENSAPEG00000023732) #19	rpl5b (ENSAPEG00000023738) #20	EVI5 (ENSAPEG00000023769) #21	gfi1ab (ENSAPEG00000023870) #22	glmnb (ENSAPEG00000023894) #24	C1orf146 (ENSAPEG00000023915) #25	ENSAPEG00000023923	EPHX4 (ENSAPEG00000023932) #27	brdt (ENSAPEG00000023949)	tgfbr3 (ENSAPEG00000023993) #29	ZNF644 (ENSAPEG00000024001) #32	barhl2 (ENSAPEG00000024014) #33	lrrc8db (ENSAPEG00000024068)	LRRC8C (ENSAPEG00000000295)	kyat3.2 (ENSAPEG00000000339)	lmo4b (ENSAPEG00000000429)	HS2ST1 (ENSAPEG00000000447)	CLDN18 (ENSAPEG00000000482)	SOX14 (ENSAPEG00000000488)
Clown anemonefish	MODERN SPECIES	1876		ENSAOCG00000007738	pbx1b (ENSAOCG00000007774)	glulb (ENSAOCG00000007805)	ENSAOCG00000007868	gadd45ab (ENSAOCG00000007893)	GNG12 (ENSAOCG00000007905)	WLS (ENSAOCG00000008017)	dr1 (ENSAOCG00000008037) #15	zgc:109982 (ENSAOCG00000008084)	scinla (ENSAOCG00000000460)	ENSAOCG00000008118 #16	DIPK1A (ENSAOCG00000008148) #19	rpl5b (ENSAOCG00000008171) #20	EVI5 (ENSAOCG00000008291) #21	gfi1ab (ENSAOCG00000008339) #22	glmnb (ENSAOCG00000008367) #24	C1orf146 (ENSAOCG00000008409) #25	ENSAOCG00000008420 ##26
Spiny chromis	MODERN SPECIES	4	med8 (ENSAPOG00000015957)	pbx1b (ENSAPOG00000015922)	glulb (ENSAPOG00000015881)	ZNF648 (ENSAPOG00000015844)	ENSAPOG00000015786	gadd45ab (ENSAPOG00000015769)	GNG12 (ENSAPOG00000015745)	WLS (ENSAPOG00000015728)	dr1 (ENSAPOG00000015469) #15	zgc:109982 (ENSAPOG00000015448)	scinla (ENSAPOG00000015410)	ENSAPOG00000015323 #16	DIPK1A (ENSAPOG00000015301) #19	rpl5b (ENSAPOG00000015269) #20	EVI5 (ENSAPOG00000015228) #21	gfi1ab (ENSAPOG00000015189) #22	glmnb (ENSAPOG00000015183) #24	C1orf146 (ENSAPOG00000015114) #25	ENSAPOG00000015084	EPHX4 (ENSAPOG00000015065) #27	brdt (ENSAPOG00000015031)	tgfbr3 (ENSAPOG00000001004) #29	ZNF644 (ENSAPOG00000014751) #32	barhl2 (ENSAPOG00000014710) #33	lrrc8db (ENSAPOG00000014693)	mibp2 (ENSAPOG00000000407)
Bicolor damselfish	MODERN SPECIES	261	med8 (ENSSPAG00000008664)	pbx1b (ENSSPAG00000008689)	glulb (ENSSPAG00000008726)	ENSSPAG00000008747	ENSSPAG00000008752	gadd45ab (ENSSPAG00000008793)	GNG12 (ENSSPAG00000008799)	WLS (ENSSPAG00000008818)	dr1 (ENSSPAG00000008932) #15	zgc:109982 (ENSSPAG00000008946)	scinla (ENSSPAG00000008970)	ENSSPAG00000009013 #16	DIPK1A (ENSSPAG00000009028) #19	rpl5b (ENSSPAG00000009041) #20	EVI5 (ENSSPAG00000009072) #21	gfi1ab (ENSSPAG00000009140) #22	glmnb (ENSSPAG00000009156) #24	C1orf146 (ENSSPAG00000009223) #25	ENSSPAG00000009249	EPHX4 (ENSSPAG00000009274) #27	brdt (ENSSPAG00000009293)	tgfbr3 (ENSSPAG00000009331) #29	ENSSPAG00000009362 #32	ENSSPAG00000009370	barhl2 (ENSSPAG00000009379) #33	lrrc8db (ENSSPAG00000009387)	LRRC8C (ENSSPAG00000009394)	kyat3.2 (ENSSPAG00000009406)
Cichlidae	ANCESTRAL SPECIES	36	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b
P. nyererei	MODERN SPECIES	318	pbx1b (ENSPNYG00000021729)	glulb (ENSPNYG00000021707)	ZNF648 (ENSPNYG00000021697)	ENSPNYG00000021690	ENSPNYG00000021677	gadd45ab (ENSPNYG00000021665)	GNG12 (ENSPNYG00000021652)	WLS (ENSPNYG00000021514)	dr1 (ENSPNYG00000021460) #15	zgc:109982 (ENSPNYG00000021449)	scinla (ENSPNYG00000021419)	ENSPNYG00000021403 #16	DIPK1A (ENSPNYG00000021390) #19	rpl5b (ENSPNYG00000021372) #20	EVI5 (ENSPNYG00000021243) #21	gfi1ab (ENSPNYG00000021183) #22	glmnb (ENSPNYG00000021137) #24	C1orf146 (ENSPNYG00000021112) #25	ENSPNYG00000021105 ##26	ENSPNYG00000021080	EPHX4 (ENSPNYG00000021061) #27	brdt (ENSPNYG00000021031)	tgfbr3 (ENSPNYG00000021005) #29	ENSPNYG00000020986 #32	barhl2 (ENSPNYG00000020977) #33	LRRC8C (ENSPNYG00000020959)	kyat3.2 (ENSPNYG00000020929)	lmo4b (ENSPNYG00000020914)	HS2ST1 (ENSPNYG00000020893)	ENSPNYG00000020823	SOX14 (ENSPNYG00000020820)
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Eastern happy	MODERN SPECIES	14	med8 (ENSACLG00000026828)	pbx1b (ENSACLG00000026804)	glulb (ENSACLG00000026790)	ZNF648 (ENSACLG00000026783)	ENSACLG00000026744	gadd45ab (ENSACLG00000026739)	GNG12 (ENSACLG00000026713)	WLS (ENSACLG00000026645)	dr1 (ENSACLG00000026635) #15	zgc:109982 (ENSACLG00000026626)	scinla (ENSACLG00000026605)	ENSACLG00000026600 #16	DIPK1A (ENSACLG00000026593) #19	rpl5b (ENSACLG00000026573) #20	EVI5 (ENSACLG00000026472) #21	gfi1ab (ENSACLG00000026458) #22	glmnb (ENSACLG00000026432) #24	C1orf146 (ENSACLG00000026425) #25	ENSACLG00000026400	EPHX4 (ENSACLG00000026378) #27	brdt (ENSACLG00000026240)	tgfbr3 (ENSACLG00000026220) #29	ENSACLG00000026169 #32	barhl2 (ENSACLG00000026157) #33	lrrc8db (ENSACLG00000026139)	LRRC8C (ENSACLG00000026134)	kyat3.2 (ENSACLG00000026115)	lmo4b (ENSACLG00000026084)	HS2ST1 (ENSACLG00000026072)	ENSACLG00000026050	SOX14 (ENSACLG00000026049)
Zebra mbuna	MODERN SPECIES	1105	med8 (ENSMZEG00005010492)	pbx1b (ENSMZEG00005010470)	glulb (ENSMZEG00005010440)	ZNF648 (ENSMZEG00005010435)	ENSMZEG00005010404	gadd45ab (ENSMZEG00005010391)	GNG12 (ENSMZEG00005010381)	WLS (ENSMZEG00005010088)	dr1 (ENSMZEG00005010073) #15	zgc:109982 (ENSMZEG00005010063)	scinla (ENSMZEG00005010041)	ENSMZEG00005010027 #16	DIPK1A (ENSMZEG00005010017) #19	rpl5b (ENSMZEG00005009965) #20	EVI5 (ENSMZEG00005009929) #21	gfi1ab (ENSMZEG00005009895) #22	glmnb (ENSMZEG00005009877) #24	C1orf146 (ENSMZEG00005009871) #25	ENSMZEG00005009856	EPHX4 (ENSMZEG00005009837) #27	brdt (ENSMZEG00005009807)	tgfbr3 (ENSMZEG00005009779) #29	ENSMZEG00005009770 #32	ENSMZEG00005009760	barhl2 (ENSMZEG00005009744) #33	lrrc8db (ENSMZEG00005009734)	LRRC8C (ENSMZEG00005009724)	kyat3.2 (ENSMZEG00005009689)	lmo4b (ENSMZEG00005009652)	HS2ST1 (ENSMZEG00005009613)	ENSMZEG00005009595
Burton s mouthbrooder	MODERN SPECIES	301	med8 (ENSHBUG00000011142)	pbx1b (ENSHBUG00000011179)	glulb (ENSHBUG00000011228)	ZNF648 (ENSHBUG00000000300)	ENSHBUG00000011281	gadd45ab (ENSHBUG00000011301)	GNG12 (ENSHBUG00000000307)	WLS (ENSHBUG00000011522)	dr1 (ENSHBUG00000011537) #15	zgc:109982 (ENSHBUG00000011577)	scinla (ENSHBUG00000011629)	ENSHBUG00000011645 #16	DIPK1A (ENSHBUG00000000883) #19	rpl5b (ENSHBUG00000011716) #20	EVI5 (ENSHBUG00000011922) #21	gfi1ab (ENSHBUG00000011969) #22	glmnb (ENSHBUG00000012011) #24	C1orf146 (ENSHBUG00000012021) #25	ENSHBUG00000012039	EPHX4 (ENSHBUG00000012073) #27	brdt (ENSHBUG00000012149)	tgfbr3 (ENSHBUG00000012166) #29	ENSHBUG00000012172 #32	ENSHBUG00000012175	barhl2 (ENSHBUG00000012187) #33	lrrc8db (ENSHBUG00000012188)	LRRC8C (ENSHBUG00000012200)	kyat3.2 (ENSHBUG00000012241)	lmo4b (ENSHBUG00000012258)	HS2ST1 (ENSHBUG00000012274)	CLDN18 (ENSHBUG00000012277)
Lyretail cichlid	MODERN SPECIES	307	glulb (ENSNBRG00000016355)	ENSNBRG00000016340	ENSNBRG00000016320	ENSNBRG00000016261	gadd45ab (ENSNBRG00000016121)	GNG12 (ENSNBRG00000016094)	WLS (ENSNBRG00000015967)	dr1 (ENSNBRG00000015930) #15	zgc:109982 (ENSNBRG00000015893)	scinla (ENSNBRG00000015882)	ENSNBRG00000015868 #16	DIPK1A (ENSNBRG00000015852) #19	rpl5b (ENSNBRG00000015839) #20	ENSNBRG00000015830	EVI5 (ENSNBRG00000015796) #21	gfi1ab (ENSNBRG00000015774) #22	glmnb (ENSNBRG00000015692) #24	C1orf146 (ENSNBRG00000015659) #25	ENSNBRG00000015612	EPHX4 (ENSNBRG00000015552) #27	brdt (ENSNBRG00000015512)	tgfbr3 (ENSNBRG00000015484) #29	ENSNBRG00000015469 #32	barhl2 (ENSNBRG00000015449) #33	LRRC8C (ENSNBRG00000015425)	kyat3.2 (ENSNBRG00000015169)	lmo4b (ENSNBRG00000015109)	HS2ST1 (ENSNBRG00000015093)	CLDN18 (ENSNBRG00000015061)	SOX14 (ENSNBRG00000015043)	FARP2 (ENSNBRG00000014973)
Nile tilapia	MODERN SPECIES	14	aldh9a1a.1 (ENSONIG00000019226)	pbx1b (ENSONIG00000019228)	med8 (ENSONIG00000019227)	glulb (ENSONIG00000019230)	ENSONIG00000038121	ENSONIG00000019232	gadd45ab (ENSONIG00000034123)	GNG12 (ENSONIG00000010546)	WLS (ENSONIG00000019236)	dr1 (ENSONIG00000036523) #15	zgc:109982 (ENSONIG00000019239)	scinla (ENSONIG00000019240)	DIPK1A (ENSONIG00000019244) #19	rpl5b (ENSONIG00000033786) #20	EVI5 (ENSONIG00000019245) #21	gfi1ab (ENSONIG00000019246) #22	ENSONIG00000019251 #25	glmnb (ENSONIG00000019248) #24	ENSONIG00000034377 ##26	ENSONIG00000019253	EPHX4 (ENSONIG00000019255) #27	brdt (ENSONIG00000019256)	tgfbr3 (ENSONIG00000019257) #29	ZNF644 (ENSONIG00000019258) #32	barhl2 (ENSONIG00000019259) #33	lrrc8db (ENSONIG00000035167)	ENSONIG00000042522	ENSONIG00000040820	kyat3.2 (ENSONIG00000019262)	lmo4b (ENSONIG00000019267)	HS2ST1 (ENSONIG00000019268)
Midas cichlid	MODERN SPECIES	72	pbx1b (ENSACIG00000015542)	glulb (ENSACIG00000015565)	ZNF648 (ENSACIG00000015584)	ENSACIG00000015598	gadd45ab (ENSACIG00000015677)	gng12a (ENSACIG00000015690)	WLS (ENSACIG00000015743)	dr1 (ENSACIG00000015836) #15	zgc:109982 (ENSACIG00000015846)	scinla (ENSACIG00000015870)	ENSACIG00000016265 #16	DIPK1A (ENSACIG00000016272) #19	rpl5b (ENSACIG00000016282) #20	ENSACIG00000016305	EVI5 (ENSACIG00000016315) #21	gfi1ab (ENSACIG00000016354) #22	glmnb (ENSACIG00000016404) #24	C1orf146 (ENSACIG00000016570) #25	ENSACIG00000016604	EPHX4 (ENSACIG00000016628) #27	brdt (ENSACIG00000016652)	tgfbr3 (ENSACIG00000016693) #29	ENSACIG00000016781 #32	barhl2 (ENSACIG00000016802) #33	ENSACIG00000016816	ENSACIG00000016825	ENSACIG00000016832	ENSACIG00000016837	ENSACIG00000016841	kyat3.2 (ENSACIG00000016858)	palm1a (ENSACIG00000016884)
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059
Aplocheiloidei	ANCESTRAL SPECIES	63	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059
Mangrove rivulus	MODERN SPECIES	203										zgc:109982 (ENSKMAG00000003445)	scinla (ENSKMAG00000003478)	ENSKMAG00000003499 #16	DIPK1A (ENSKMAG00000003521) #19	rpl5b (ENSKMAG00000003553) #20	EVI5 (ENSKMAG00000003621) #21	gfi1ab (ENSKMAG00000003810) #22	glmnb (ENSKMAG00000003848) #24	C1orf146 (ENSKMAG00000003895) #25	ENSKMAG00000003913	EPHX4 (ENSKMAG00000003950) #27	brdt (ENSKMAG00000003998)	med8 (ENSKMAG00000004043)	pbx1b (ENSKMAG00000004069)	ENSKMAG00000004102	glulb (ENSKMAG00000004121)	ZNF648 (ENSKMAG00000004156)	ENSKMAG00000004166	gadd45ab (ENSKMAG00000004181)	ENSKMAG00000004207	aldh9a1a.1 (ENSKMAG00000004229)	tmco1 (ENSKMAG00000004276)
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015008856	ENSNFUG00015008841	glulb (ENSNFUG00015008822)	ENSNFUG00015008812	ENSNFUG00015008800	GADD45AB (ENSNFUG00015008794)	GNG12 (ENSNFUG00015008792)	DR1 (ENSNFUG00015008788) #15	Nfu_g_1_000778 (ENSNFUG00015008778)	ENSNFUG00015008773	scinla (ENSNFUG00015008294)	ENSNFUG00015008197	DIPK1A (ENSNFUG00015008175) #19	RPL5 (ENSNFUG00015008108) #20	EVI5B (ENSNFUG00015007947) #21	gfi1ab (ENSNFUG00015007901) #22	glmnb (ENSNFUG00015007891) #24	C1orf146 (ENSNFUG00015007884) #25	ENSNFUG00015007882 ##26	ENSNFUG00015007877	EPHX4 (ENSNFUG00015007870) #27	brdt (ENSNFUG00015007863)	ENSNFUG00015007858	TGFBR3 (ENSNFUG00015007842) #29	barhl2 (ENSNFUG00015007832) #33	LRRC8C (ENSNFUG00015007829)	ENSNFUG00015007823	ENSNFUG00015007821	ENSNFUG00015007819	lmo4b (ENSNFUG00015007816)	HS2ST1 (ENSNFUG00015007808)
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059	ENSGT00940000158642
NAME_4	ANCESTRAL SPECIES	11	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059	ENSGT00940000158642
Sheepshead minnow	MODERN SPECIES	454	aldh9a1a.1 (ENSCVAG00000012471)	med8 (ENSCVAG00000012439)	pbx1b (ENSCVAG00000012407)	glulb (ENSCVAG00000012354)	ZNF648 (ENSCVAG00000012315)	ENSCVAG00000012301	gadd45ab (ENSCVAG00000012278)	GNG12 (ENSCVAG00000012260)	dr1 (ENSCVAG00000012251) #15	zgc:109982 (ENSCVAG00000012238)	scinla (ENSCVAG00000012206)	ENSCVAG00000012160 #16	DIPK1A (ENSCVAG00000012149) #19	rpl5b (ENSCVAG00000012116) #20	EVI5 (ENSCVAG00000012066) #21	gfi1ab (ENSCVAG00000011828) #22	glmnb (ENSCVAG00000011788) #24	C1orf146 (ENSCVAG00000011558) #25	ENSCVAG00000011543 ##26	EPHX4 (ENSCVAG00000011534) #27	ENSCVAG00000011527
Mummichog	MODERN SPECIES	2498										zgc:109982 (ENSFHEG00000011303)	scinla (ENSFHEG00000011283)	ENSFHEG00000011265 #16	DIPK1A (ENSFHEG00000011253) #19	rpl5b (ENSFHEG00000000576) #20	EVI5 (ENSFHEG00000011205) #21	gfi1ab (ENSFHEG00000010997) #22	glmnb (ENSFHEG00000010982) #24	C1orf146 (ENSFHEG00000010919) #25	ENSFHEG00000010905	EPHX4 (ENSFHEG00000010889) #27	brdt (ENSFHEG00000010870)	tgfbr3 (ENSFHEG00000010846) #29	barhl2 (ENSFHEG00000010816) #33	ENSFHEG00000010788	ENSFHEG00000010779
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233.wb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059	ENSGT00940000158642
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233.wb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059	ENSGT00940000158642
NAME_6	ANCESTRAL SPECIES	134	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233.wb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827
Sailfin molly	MODERN SPECIES	1436													DIPK1A (ENSPLAG00000010962) #19	rpl5b (ENSPLAG00000010948) #20	EVI5 (ENSPLAG00000000242) #21	gfi1ab (ENSPLAG00000010879) #22	glmnb (ENSPLAG00000010786) #24	C1orf146 (ENSPLAG00000010662) #25	ENSPLAG00000010657	EPHX4 (ENSPLAG00000010629) #27
Amazon molly	MODERN SPECIES	316	aldh9a1a.1 (ENSPFOG00000016210)	med8 (ENSPFOG00000016252)	pbx1b (ENSPFOG00000016269)	glulb (ENSPFOG00000016337)	ZNF648 (ENSPFOG00000020854)	ENSPFOG00000022879	gadd45ab (ENSPFOG00000016368)	gng12a (ENSPFOG00000016385)	dr1 (ENSPFOG00000016390) #15	zgc:109982 (ENSPFOG00000016401)	scinla (ENSPFOG00000016419)	DIPK1A (ENSPFOG00000016493) #19	rpl5b (ENSPFOG00000016503) #20	ENSPFOG00000016543	EVI5 (ENSPFOG00000016558) #21	gfi1ab (ENSPFOG00000023214) #22	glmnb (ENSPFOG00000016700) #24	C1orf146 (ENSPFOG00000016781) #25	ENSPFOG00000016801	EPHX4 (ENSPFOG00000016832) #27	brdt (ENSPFOG00000016852)	tgfbr3 (ENSPFOG00000016881) #29	barhl2 (ENSPFOG00000016909) #33	kyat3.2 (ENSPFOG00000016924)	lrrc8db (ENSPFOG00000020855)	LRRC8C (ENSPFOG00000016967)
Guppy	MODERN SPECIES	456	aldh9a1a.1 (ENSPREG00000013697)	med8 (ENSPREG00000013718)	pbx1b (ENSPREG00000013766)	glulb (ENSPREG00000013850)	ZNF648 (ENSPREG00000013856)	ENSPREG00000013867	gadd45ab (ENSPREG00000013887)	GNG12 (ENSPREG00000013900)	dr1 (ENSPREG00000013925) #15	zgc:109982 (ENSPREG00000013933)	scinla (ENSPREG00000013945)	ENSPREG00000013956 #16	DIPK1A (ENSPREG00000013970) #19	rpl5b (ENSPREG00000013983) #20	EVI5 (ENSPREG00000014012) #21	gfi1ab (ENSPREG00000014097) #22	glmnb (ENSPREG00000014112) #24	C1orf146 (ENSPREG00000014134) #25	ENSPREG00000014145	EPHX4 (ENSPREG00000014162) #27	brdt (ENSPREG00000014183)	tgfbr3 (ENSPREG00000014243) #29	barhl2 (ENSPREG00000014279) #33	lrrc8db (ENSPREG00000014283)	LRRC8C (ENSPREG00000014290)	kyat3.2 (ENSPREG00000014345)	lmo4b (ENSPREG00000014402)	HS2ST1 (ENSPREG00000014411)	SOX14 (ENSPREG00000014424)	hdlbpa (ENSPREG00000014450)	FARP2 (ENSPREG00000014504)
Platyfish	MODERN SPECIES	23	aldh9a1a.1 (ENSXMAG00000006313)	med8 (ENSXMAG00000006328)	pbx1b (ENSXMAG00000029439)	glulb (ENSXMAG00000003074)	ZNF648 (ENSXMAG00000020377)	ENSXMAG00000003089	gadd45ab (ENSXMAG00000003091)	GNG12 (ENSXMAG00000028935)	dr1 (ENSXMAG00000003101) #15	zgc:109982 (ENSXMAG00000003107)	scinla (ENSXMAG00000003115)	ENSXMAG00000025500 #16	DIPK1A (ENSXMAG00000003141) #19	rpl5b (ENSXMAG00000003143) #20	EVI5 (ENSXMAG00000003156) #21	gfi1ab (ENSXMAG00000010523) #22	ENSXMAG00000029797	glmnb (ENSXMAG00000010662) #24	C1orf146 (ENSXMAG00000010761) #25	ENSXMAG00000010766	EPHX4 (ENSXMAG00000010782) #27	brdt (ENSXMAG00000011524)	ENSXMAG00000024479	tgfbr3 (ENSXMAG00000028787) #29	barhl2 (ENSXMAG00000023590) #33	lrrc8db (ENSXMAG00000020032)	LRRC8C (ENSXMAG00000005273)	kyat3.2 (ENSXMAG00000005231)	ENSXMAG00000027694	lmo4b (ENSXMAG00000014955)	HS2ST1 (ENSXMAG00000025881)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000154327.b.f	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01050000244939.a.a.b.a.b.j	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233.tb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000160040.B.a.b	ENSGT01050000244924.a.a.b.a.a	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554
Oryzias_a	ANCESTRAL SPECIES	91					ENSGT00940000178376	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01050000244939.a.a.b.a.b.j	ENSGT00940000154715.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233.tb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000160040.B.a.b	ENSGT01050000244924.a.a.b.a.a.i	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554
Japanese Medaka HdrR	MODERN SPECIES	18	orc1 (ENSORLG00000013547)	rtca (ENSORLG00000013605)	cdc14ab (ENSORLG00000013619)	ENSORLG00000024048	aatf (ENSORLG00000013628)	cpt2 (ENSORLG00000013660)	magoh (ENSORLG00000025839)	ENSORLG00000013696	ENSORLG00000030046	dr1 (ENSORLG00000013717) #15	zgc:109982 (ENSORLG00000013730)	ENSORLG00000022156 #16	DIPK1A (ENSORLG00000013740) #19	rpl5b (ENSORLG00000013764) #20	EVI5 (ENSORLG00000013797) #21	gfi1ab (ENSORLG00000013806) #22	glmnb (ENSORLG00000013840) #24	C1orf146 (ENSORLG00000021853) #25	ENSORLG00000027069	EPHX4 (ENSORLG00000013865) #27	ENSORLG00000013915	tgfbr3 (ENSORLG00000013933) #29	ENSORLG00000013940	ENSORLG00000013945	ENSORLG00000027163	ENSORLG00000013953	ENSORLG00000030375	ENSORLG00000029404	PTBP1 (ENSORLG00000014019)	ENSORLG00000028536	zbtb37 (ENSORLG00000014087)
Chinese medaka	MODERN SPECIES	111						ENSOSIG00000021378	magoh (ENSOSIG00000021380)	cpt2 (ENSOSIG00000021383)	TGM1 (ENSOSIG00000021393)	ENSOSIG00000021394	dr1 (ENSOSIG00000021396) #15	zgc:109982 (ENSOSIG00000021400)	DIPK1A (ENSOSIG00000021405) #19	rpl5b (ENSOSIG00000021413) #20	EVI5 (ENSOSIG00000021459) #21	gfi1ab (ENSOSIG00000022161) #22	glmnb (ENSOSIG00000022163) #24	C1orf146 (ENSOSIG00000022168) #25	ENSOSIG00000022172 ##26	ENSOSIG00000022180 ##26	EPHX4 (ENSOSIG00000022184) #27	brdt (ENSOSIG00000022192)	tgfbr3 (ENSOSIG00000022198) #29	ENSOSIG00000022201	ENSOSIG00000022256	ENSOSIG00000022395	ENSOSIG00000022396	PTBP1 (ENSOSIG00000022398)	ENSOSIG00000022405	serpinc1 (ENSOSIG00000022410)	zbtb37 (ENSOSIG00000022411)
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT01100000263552.f.b.f.b	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659	ENSGT00390000000288	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT01050000244939.a.a.b.a.b.j	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000154382.a.a ##26	ENSGT00940000156233.tb #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00400000024256	ENSGT00940000165071	ENSGT00530000064649	ENSGT00940000159889.b.a	ENSGT00940000160040.B.a.b	ENSGT01050000244924.a.a.b.a.a	ENSGT00390000007310	ENSGT00940000157967
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000002387	med8 (ENSOJAG00000002355)	aldh9a1a.1 (ENSOJAG00000001848)	tmco1 (ENSOJAG00000001561)	aatf (ENSOJAG00000001555)	magoh (ENSOJAG00000001552)	cpt2 (ENSOJAG00000001549)	TGM1 (ENSOJAG00000001507)	ENSOJAG00000001468	dr1 (ENSOJAG00000001463) #15	zgc:109982 (ENSOJAG00000001458)	DIPK1A (ENSOJAG00000001449) #19	rpl5b (ENSOJAG00000001432) #20	ENSOJAG00000001425	EVI5 (ENSOJAG00000001204) #21	gfi1ab (ENSOJAG00000001093) #22	C1orf146 (ENSOJAG00000001078) #25	ENSOJAG00000001072 ##26	ENSOJAG00000001066 ##26	ENSOJAG00000001061	EPHX4 (ENSOJAG00000001056) #27	brdt (ENSOJAG00000001044)	ENSOJAG00000001030	ENSOJAG00000001029	myoc (ENSOJAG00000001013)	ENSOJAG00000001003	rangrf (ENSOJAG00000000999)	ITPA (ENSOJAG00000000986)	mettl13 (ENSOJAG00000000978)	pigc (ENSOJAG00000000967)	tmed5 (ENSOJAG00000000958) #17
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000177801	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Channel bull blenny	MODERN SPECIES	18	aldh9a1a.1 (ENSCGOG00000003054)	med8 (ENSCGOG00000003229)	pbx1b (ENSCGOG00000003298)	glulb (ENSCGOG00000003558)	ZNF648 (ENSCGOG00000003668)	ENSCGOG00000003670	gadd45ab (ENSCGOG00000003678)	GNG12 (ENSCGOG00000003688)	WLS (ENSCGOG00000003714)	dr1 (ENSCGOG00000004157) #15	zgc:109982 (ENSCGOG00000004159)	scinla (ENSCGOG00000004193)	DIPK1A (ENSCGOG00000004798) #19	rpl5b (ENSCGOG00000004805) #20	EVI5 (ENSCGOG00000005235) #21	gfi1ab (ENSCGOG00000006468) #22	glmnb (ENSCGOG00000006472) #24	ENSCGOG00000006481	C1orf146 (ENSCGOG00000006486) #25	EPHX4 (ENSCGOG00000006492) #27	brdt (ENSCGOG00000006503)	tgfbr3 (ENSCGOG00000006544) #29	ZNF644 (ENSCGOG00000006559) #32	barhl2 (ENSCGOG00000006562) #33	lrrc8db (ENSCGOG00000006565)	LRRC8C (ENSCGOG00000006567)	kyat3.2 (ENSCGOG00000006601)	lmo4b (ENSCGOG00000007008)	HS2ST1 (ENSCGOG00000007016)	ENSCGOG00000007019	SOX14 (ENSCGOG00000007025)
Pike perch	MODERN SPECIES	34	uck2a (ENSSLUG00000021367)	tmco1 (ENSSLUG00000021357)	med8 (ENSSLUG00000021351)	pbx1b (ENSSLUG00000021286)	glulb (ENSSLUG00000021276)	ZNF648 (ENSSLUG00000021273)	gadd45ab (ENSSLUG00000021270)	GNG12 (ENSSLUG00000021266)	WLS (ENSSLUG00000021256)	dr1 (ENSSLUG00000021252) #15	zgc:109982 (ENSSLUG00000021230)	scinla (ENSSLUG00000020926)	DIPK1A (ENSSLUG00000020830) #19	rpl5b (ENSSLUG00000020795) #20	EVI5 (ENSSLUG00000018785) #21	gfi1ab (ENSSLUG00000018594) #22	C1orf146 (ENSSLUG00000018567) #25	ENSSLUG00000018558	EPHX4 (ENSSLUG00000018553) #27	brdt (ENSSLUG00000018537)	tgfbr3 (ENSSLUG00000018505) #29	ENSSLUG00000018502 #32	barhl2 (ENSSLUG00000018501) #33	lrrc8db (ENSSLUG00000018500)	LRRC8C (ENSSLUG00000018497)	kyat3.2 (ENSSLUG00000018071)	lmo4b (ENSSLUG00000018034)	HS2ST1 (ENSSLUG00000018028)	CLDN18 (ENSSLUG00000018027)	SOX14 (ENSSLUG00000018022)	hdlbpa (ENSSLUG00000012783)
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Stickleback	MODERN SPECIES	8	tmco1 (ENSGACG00000003901)	aldh9a1a.1 (ENSGACG00000003908)	med8 (ENSGACG00000003948)	pbx1b (ENSGACG00000003964)	glulb (ENSGACG00000003973)	ENSGACG00000004061	gadd45ab (ENSGACG00000004068)	GNG12 (ENSGACG00000004083)	WLS (ENSGACG00000004090)	dr1 (ENSGACG00000004108) #15	zgc:109982 (ENSGACG00000004123)	scinla (ENSGACG00000004130)	DIPK1A (ENSGACG00000004224) #19	rpl5b (ENSGACG00000004230) #20	EVI5 (ENSGACG00000004241) #21	gfi1ab (ENSGACG00000004257) #22	glmnb (ENSGACG00000004264) #24	ENSGACG00000004278 ##26	ENSGACG00000004281	EPHX4 (ENSGACG00000004290) #27	brdt (ENSGACG00000004301)	tgfbr3 (ENSGACG00000004328) #29	ENSGACG00000004339	barhl2 (ENSGACG00000004346) #33	lrrc8db (ENSGACG00000004353)	LRRC8C (ENSGACG00000004354)	kyat3.2 (ENSGACG00000004360)	lmo4b (ENSGACG00000004383)	HS2ST1 (ENSGACG00000004397)	CLDN18 (ENSGACG00000004423)	ttc39c (ENSGACG00000004440)
Lumpfish	MODERN SPECIES	19	aldh9a1a.1 (ENSCLMG00005010552)	CPT2 (ENSCLMG00005010625)	med8 (ENSCLMG00005010626)	pbx1b (ENSCLMG00005010628)	glulb (ENSCLMG00005010780)	ENSCLMG00005010781	ENSCLMG00005010782	gadd45ab (ENSCLMG00005010783)	GNG12 (ENSCLMG00005010784)	WLS (ENSCLMG00005010785)	dr1 (ENSCLMG00005010812) #15	scinla (ENSCLMG00005010815)	DIPK1A (ENSCLMG00005014022) #19	rpl5b (ENSCLMG00005014212) #20	EVI5 (ENSCLMG00005014236) #21	gfi1ab (ENSCLMG00005014345) #22	glmnb (ENSCLMG00005014348) #24	C1orf146 (ENSCLMG00005014352) #25	ENSCLMG00005014353 ##26	EPHX4 (ENSCLMG00005014354) #27	brdt (ENSCLMG00005014358)	tgfbr3 (ENSCLMG00005014421) #29	ENSCLMG00005014582	barhl2 (ENSCLMG00005014583) #33	lrrc8db (ENSCLMG00005014584)	ENSCLMG00005014585	ENSCLMG00005014586	ENSCLMG00005014587	kyat3.2 (ENSCLMG00005014590)	lmo4b (ENSCLMG00005014600)	HS2ST1 (ENSCLMG00005014603)
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Large yellow croaker	MODERN SPECIES	489	med8 (ENSLCRG00005007252)	pbx1b (ENSLCRG00005007241)	glulb (ENSLCRG00005007237)	ENSLCRG00005007231	gadd45ab (ENSLCRG00005007217)	ENSLCRG00005007214	GNG12 (ENSLCRG00005007213)	WLS (ENSLCRG00005007209)	dr1 (ENSLCRG00005007208) #15	zgc:109982 (ENSLCRG00005007198)	scinla (ENSLCRG00005007052)	ENSLCRG00005007046	DIPK1A (ENSLCRG00005007045) #19	rpl5b (ENSLCRG00005006938) #20	EVI5 (ENSLCRG00005005718) #21	gfi1ab (ENSLCRG00005005697) #22	glmnb (ENSLCRG00005005696) #24	C1orf146 (ENSLCRG00005005693) #25	ENSLCRG00005005690	EPHX4 (ENSLCRG00005005686) #27	brdt (ENSLCRG00005005683)	tgfbr3 (ENSLCRG00005005681) #29	ZNF644 (ENSLCRG00005005680) #32	barhl2 (ENSLCRG00005005679) #33	lrrc8db (ENSLCRG00005005678)	LRRC8C (ENSLCRG00005005676)	kyat3.2 (ENSLCRG00005004968)	lmo4b (ENSLCRG00005004958)	HS2ST1 (ENSLCRG00005004956)	CLDN18 (ENSLCRG00005004954)	SOX14 (ENSLCRG00005004953)
Ballan wrasse	MODERN SPECIES	2	pbx1b (ENSLBEG00000000851)	glulb (ENSLBEG00000000801)	glulb (ENSLBEG00000000765)	ENSLBEG00000000751	ENSLBEG00000000690	gadd45ab (ENSLBEG00000000664)	GNG12 (ENSLBEG00000000573)	WLS (ENSLBEG00000000296)	dr1 (ENSLBEG00000000282) #15	zgc:109982 (ENSLBEG00000000257)	scinla (ENSLBEG00000000196)	ENSLBEG00000027935 #16	DIPK1A (ENSLBEG00000027925) #19	rpl5b (ENSLBEG00000027893) #20	EVI5 (ENSLBEG00000027813) #21	gfi1ab (ENSLBEG00000027776) #22	glmnb (ENSLBEG00000027744) #24	C1orf146 (ENSLBEG00000027730) #25	ENSLBEG00000027713	EPHX4 (ENSLBEG00000027701) #27	brdt (ENSLBEG00000027664)	tgfbr3 (ENSLBEG00000027635) #29	ENSLBEG00000027615 #32	barhl2 (ENSLBEG00000027599) #33	lrrc8db (ENSLBEG00000027590)	LRRC8C (ENSLBEG00000027575)	kyat3.2 (ENSLBEG00000027552)	lmo4b (ENSLBEG00000027526)	HS2ST1 (ENSLBEG00000027509)	SOX14 (ENSLBEG00000027494)	hdlbpa (ENSLBEG00000027461)
Tetraodontidae	ANCESTRAL SPECIES	27	ENSGT01030000234579.C.m	ENSGT00390000010760.f	ENSGT00900000141090.t	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00530000063861.b.b #29	ENSGT00940000158611 #33	ENSGT00550000075041	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000160749.a.a	ENSGT00900000141059
Fugu	MODERN SPECIES	12	nme7 (ENSTRUG00000019681)	dpt (ENSTRUG00000023954)	ATP1B1 (ENSTRUG00000023651)	zbtb11 (ENSTRUG00000004329)	tp63 (ENSTRUG00000003420)	tprg1 (ENSTRUG00000003153)	lpp (ENSTRUG00000002677)	bcl6aa (ENSTRUG00000002214)	INPP5D (ENSTRUG00000001313)	GPR17 (ENSTRUG00000001244)	ENSTRUG00000000755	sap130a (ENSTRUG00000000628)	DIPK1A (ENSTRUG00000000590) #19	rpl5b (ENSTRUG00000000524) #20	EVI5 (ENSTRUG00000000437) #21	gfi1ab (ENSTRUG00000000415) #22	glmnb (ENSTRUG00000000383) #24	C1orf146 (ENSTRUG00000020683) #25	ENSTRUG00000031325 ##26	ENSTRUG00000000368	ENSTRUG00000031151	EPHX4 (ENSTRUG00000003036) #27	tgfbr3 (ENSTRUG00000012898) #29	barhl2 (ENSTRUG00000012862) #33	lrrc8db (ENSTRUG00000012824)	LRRC8C (ENSTRUG00000025832)	kyat3.2 (ENSTRUG00000012767)	lmo4 (ENSTRUG00000012701)	HS2ST1 (ENSTRUG00000012639)	SOX14 (ENSTRUG00000012630)	hdlbpa (ENSTRUG00000012148)
Tetraodon	MODERN SPECIES		ATP1B1 (ENSTNIG00000013777)	dpt (ENSTNIG00000013776)	zbtb11 (ENSTNIG00000013775)	tp63 (ENSTNIG00000013774)	tprg1 (ENSTNIG00000013773)	lpp (ENSTNIG00000013772)	bcl6aa (ENSTNIG00000013771)	smx5 (ENSTNIG00000013770)	ENSTNIG00000013769	GPR17 (ENSTNIG00000013768)	ENSTNIG00000013767	sap130a (ENSTNIG00000013766)	DIPK1A (ENSTNIG00000013765) #19	rpl5b (ENSTNIG00000013764) #20	EVI5 (ENSTNIG00000013763) #21	gfi1ab (ENSTNIG00000000651) #22	glmnb (ENSTNIG00000001477) #24	ENSTNIG00000013762	EPHX4 (ENSTNIG00000013761) #27	tgfbr3 (ENSTNIG00000013760) #29	barhl2 (ENSTNIG00000013759) #33	lrrc8db (ENSTNIG00000013758)	LRRC8C (ENSTNIG00000013757)	kyat3.2 (ENSTNIG00000013756)	ENSTNIG00000004051	ENSTNIG00000000570	brd8b (ENSTNIG00000002972)	ppp3cb (ENSTNIG00000005378)	ube2d2 (ENSTNIG00000005379)	ENSTNIG00000000647	ENSTNIG00000004637
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e
Siamese fighting fish	MODERN SPECIES	15	pbx1b (ENSBSLG00000010974)	glulb (ENSBSLG00000010952)	ENSBSLG00000010932	ENSBSLG00000010919	ENSBSLG00000010707	gadd45ab (ENSBSLG00000010650)	GNG12 (ENSBSLG00000010595)	ENSBSLG00000010291	ENSBSLG00000010286	dr1 (ENSBSLG00000010283) #15	zgc:109982 (ENSBSLG00000010279)	scinla (ENSBSLG00000008853)	DIPK1A (ENSBSLG00000008827) #19	rpl5b (ENSBSLG00000008787) #20	EVI5 (ENSBSLG00000008152) #21	gfi1ab (ENSBSLG00000008114) #22	glmnb (ENSBSLG00000008093) #24	C1orf146 (ENSBSLG00000008065) #25	ENSBSLG00000008059 ##26	ENSBSLG00000008032	EPHX4 (ENSBSLG00000008014) #27	brdt (ENSBSLG00000007937)	tgfbr3 (ENSBSLG00000007798) #29	ENSBSLG00000006548	ENSBSLG00000005960 #32	barhl2 (ENSBSLG00000005958) #33	ENSBSLG00000005956	LRRC8C (ENSBSLG00000005955)	kyat3.2 (ENSBSLG00000005039)	lmo4b (ENSBSLG00000004848)	HS2ST1 (ENSBSLG00000004789)
Climbing perch	MODERN SPECIES	17	uck2a (ENSATEG00000008568)	tmco1 (ENSATEG00000008593)	aldh9a1a.1 (ENSATEG00000008606)	ENSATEG00000008636	ENSATEG00000008661	glulb (ENSATEG00000008704)	ENSATEG00000008801	gadd45ab (ENSATEG00000008812)	GNG12 (ENSATEG00000030115)	WLS (ENSATEG00000008864)	dr1 (ENSATEG00000026820) #15	scinla (ENSATEG00000008949)	DIPK1A (ENSATEG00000008993) #19	rpl5b (ENSATEG00000009015) #20	EVI5 (ENSATEG00000009070) #21	gfi1ab (ENSATEG00000009167) #22	glmnb (ENSATEG00000009177) #24	C1orf146 (ENSATEG00000029562) #25	ENSATEG00000009351 ##26	ENSATEG00000025557	brdt (ENSATEG00000009390)	ENSATEG00000028337 #27	tgfbr3 (ENSATEG00000009451) #29	ZNF644 (ENSATEG00000009475) #32	barhl2 (ENSATEG00000009497) #33	lrrc8db (ENSATEG00000009509)	LRRC8C (ENSATEG00000009513)	kyat3.2 (ENSATEG00000009525)	lmo4b (ENSATEG00000009587)	ENSATEG00000009607	ENSATEG00000009645
Zig-zag eel	MODERN SPECIES	18	tmco1 (ENSMAMG00000007636)	aldh9a1a.1 (ENSMAMG00000007648)	ENSMAMG00000007684	ENSMAMG00000007696	glulb (ENSMAMG00000007736)	ENSMAMG00000007755	ENSMAMG00000007770	gadd45ab (ENSMAMG00000028419)	ENSMAMG00000007801	WLS (ENSMAMG00000007809)	dr1 (ENSMAMG00000007916) #15	scinla (ENSMAMG00000007947)	DIPK1A (ENSMAMG00000008005) #19	rpl5b (ENSMAMG00000008022) #20	EVI5 (ENSMAMG00000008055) #21	gfi1ab (ENSMAMG00000008125) #22	glmnb (ENSMAMG00000008136) #24	C1orf146 (ENSMAMG00000008238) #25	ENSMAMG00000008259	EPHX4 (ENSMAMG00000008303) #27	brdt (ENSMAMG00000008337)	tgfbr3 (ENSMAMG00000008403) #29	ENSMAMG00000008428 #32	barhl2 (ENSMAMG00000008453) #33	lrrc8db (ENSMAMG00000008461)	LRRC8C (ENSMAMG00000008471)	kyat3.2 (ENSMAMG00000008475)	ENSMAMG00000008494	lmo4b (ENSMAMG00000008511)	ENSMAMG00000008516	ENSMAMG00000008542
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Seriola	ANCESTRAL SPECIES	21	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Yellowtail amberjack	MODERN SPECIES	2958	med8 (ENSSLDG00000019796)	pbx1b (ENSSLDG00000019830)	glulb (ENSSLDG00000019865)	ZNF648 (ENSSLDG00000019892)	ENSSLDG00000019902	gadd45ab (ENSSLDG00000019947)	GNG12 (ENSSLDG00000019959)	WLS (ENSSLDG00000019972)	dr1 (ENSSLDG00000019992) #15	zgc:109982 (ENSSLDG00000020018)	scinla (ENSSLDG00000020067)	ENSSLDG00000020091 #16	DIPK1A (ENSSLDG00000020101) #19	rpl5b (ENSSLDG00000020108) #20	EVI5 (ENSSLDG00000020125) #21	gfi1ab (ENSSLDG00000020163) #22	glmnb (ENSSLDG00000020223) #24	C1orf146 (ENSSLDG00000020254) #25	ENSSLDG00000020274	EPHX4 (ENSSLDG00000020321) #27	brdt (ENSSLDG00000020342)	tgfbr3 (ENSSLDG00000020387) #29	ZNF644 (ENSSLDG00000020465) #32	barhl2 (ENSSLDG00000020476) #33	ENSSLDG00000020490	lrrc8db (ENSSLDG00000020503)	LRRC8C (ENSSLDG00000020509)	kyat3.2 (ENSSLDG00000020519)	lmo4b (ENSSLDG00000020567)
Greater amberjack	MODERN SPECIES	110	med8 (ENSSDUG00000022527)	pbx1b (ENSSDUG00000022517)	glulb (ENSSDUG00000022512)	ENSSDUG00000022497	gadd45ab (ENSSDUG00000022494)	GNG12 (ENSSDUG00000022488)	WLS (ENSSDUG00000022481)	dr1 (ENSSDUG00000022478) #15	zgc:109982 (ENSSDUG00000022470)	scinla (ENSSDUG00000022455)	ENSSDUG00000022452 #16	DIPK1A (ENSSDUG00000022450) #19	rpl5b (ENSSDUG00000022441) #20	EVI5 (ENSSDUG00000022417) #21	ENSSDUG00000022412	gfi1ab (ENSSDUG00000022410) #22	glmnb (ENSSDUG00000022372) #24	C1orf146 (ENSSDUG00000022361) #25	ENSSDUG00000022352	EPHX4 (ENSSDUG00000022342) #27	brdt (ENSSDUG00000022328)	tgfbr3 (ENSSDUG00000022320) #29	ZNF644 (ENSSDUG00000022316) #32	barhl2 (ENSSDUG00000022314) #33	lrrc8db (ENSSDUG00000022312)	LRRC8C (ENSSDUG00000022309)	kyat3.2 (ENSSDUG00000022303)	lmo4b (ENSSDUG00000022298)	HS2ST1 (ENSSDUG00000022287)	CLDN18 (ENSSDUG00000022283)	SOX14 (ENSSDUG00000022278)
Pleuronectoidei	ANCESTRAL SPECIES	40	ENSGT00390000002659	ENSGT00940000163309	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00390000010047.g.a	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.q.b	ENSGT00390000005897.i	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000153190.A.h #16	ENSGT00940000164612.b	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a ##26	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT00940000159311.d.a.b.e	ENSGT00940000159250	ENSGT00940000155827	ENSGT00940000157730	ENSGT00530000063408.B.c.b	ENSGT00940000158655.e	ENSGT00940000160749.a.a
Turbot	MODERN SPECIES	3	ENSSMAG00000003681	uck2a (ENSSMAG00000028536)	tmco1 (ENSSMAG00000003525)	aldh9a1a.1 (ENSSMAG00000003462)	ENSSMAG00000003426	ENSSMAG00000003384	glulb (ENSSMAG00000003361)	gadd45ab (ENSSMAG00000003286)	ENSSMAG00000033917	WLS (ENSSMAG00000003171)	dr1 (ENSSMAG00000022878) #15	scinla (ENSSMAG00000003069)	DIPK1A (ENSSMAG00000003047) #19	rpl5b (ENSSMAG00000003009) #20	EVI5 (ENSSMAG00000002806) #21	gfi1ab (ENSSMAG00000003354) #22	ENSSMAG00000035995	glmnb (ENSSMAG00000002748) #24	C1orf146 (ENSSMAG00000002725) #25	ENSSMAG00000026054 ##26	ENSSMAG00000002658 #27	brdt (ENSSMAG00000002609)	tgfbr3 (ENSSMAG00000002576) #29	ZNF644 (ENSSMAG00000002570) #32	barhl2 (ENSSMAG00000002563) #33	ENSSMAG00000002553	LRRC8C (ENSSMAG00000033686)	kyat3.2 (ENSSMAG00000002512)	lmo4b (ENSSMAG00000002490)	ENSSMAG00000002471	ENSSMAG00000002466
Pinecone sodierfish	MODERN SPECIES	18	uck2a (ENSMMDG00005012604)	tmco1 (ENSMMDG00005012603)	aldh9a1a.1 (ENSMMDG00005012556)	med8 (ENSMMDG00005012551)	pbx1b (ENSMMDG00005012269)	glulb (ENSMMDG00005012253)	gadd45ab (ENSMMDG00005012247)	GNG12 (ENSMMDG00005012244)	WLS (ENSMMDG00005012166)	dr1 (ENSMMDG00005012161) #15	zgc:109982 (ENSMMDG00005012160)	scinla (ENSMMDG00005008981)	DIPK1A (ENSMMDG00005008633) #19	rpl5b (ENSMMDG00005008592) #20	EVI5 (ENSMMDG00005003795) #21	gfi1ab (ENSMMDG00005003615) #22	glmnb (ENSMMDG00005003601) #24	C1orf146 (ENSMMDG00005003591) #25	ENSMMDG00005003587 ##26	EPHX4 (ENSMMDG00005003584) #27	brdt (ENSMMDG00005003554)	tgfbr3 (ENSMMDG00005003536) #29	ENSMMDG00005003528 #32	barhl2 (ENSMMDG00005003524) #33	ENSMMDG00005003521	ENSMMDG00005003520	ENSMMDG00005003517	kyat3.2 (ENSMMDG00005002890)	lmo4b (ENSMMDG00005002835)	HS2ST1 (ENSMMDG00005002820)	ENSMMDG00005002804
Cod	MODERN SPECIES	3	ENSGMOG00000007610	aldh9a1a.1 (ENSGMOG00000007613)	ENSGMOG00000007623	ENSGMOG00000007627	glulb (ENSGMOG00000007636)	ENSGMOG00000026530	ENSGMOG00000007644	ENSGMOG00000033851	ENSGMOG00000026074	ENSGMOG00000007700	dr1 (ENSGMOG00000033884) #15	scinla (ENSGMOG00000007706)	RPL5 (ENSGMOG00000007719) #20	DIPK1A (ENSGMOG00000007713) #19	EVI5 (ENSGMOG00000007728) #21	gfi1ab (ENSGMOG00000007737) #22	glmnb (ENSGMOG00000007744) #24	C1orf146 (ENSGMOG00000026334) #25	ENSGMOG00000030050	ENSGMOG00000028470	ENSGMOG00000026550	ENSGMOG00000032546	cldn33b (ENSGMOG00000026144)	wwc3 (ENSGMOG00000011138)	ENSGMOG00000036523	chd1l (ENSGMOG00000005076)	sft2d2a (ENSGMOG00000005055)	tmem45a (ENSGMOG00000005038)	ENSGMOG00000024811	ENSGMOG00000004999	ENSGMOG00000004968
Protacanthopterygii	ANCESTRAL SPECIES	34	ENSGT00390000011838	ENSGT00940000163762.a.b	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b	ENSGT00940000163676	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a	ENSGT01100000263497.E.b.r.b	ENSGT00550000075010 #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.b.a #20	ENSGT00940000153846.a.a #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000164211	ENSGT00940000155195	ENSGT00940000157937.b	ENSGT00940000158520.e.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	60	ENSGT00940000154930.eb.q	ENSGT00940000155060.C.a.b.e	ENSGT00390000018402.i.a	ENSGT00390000011838.p	ENSGT00940000163762.a.b.e	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b.a	ENSGT00940000163676.d	ENSGT00950000182964.a.a.g.a.a	ENSGT01100000263497.E.b.r.b.d	ENSGT00550000075010.a #15	ENSGT00940000164612.b.d	ENSGT00390000006452.b.b.g.d #19	ENSGT00950000183210.g.b.a.a #20	ENSGT00940000153846.a.a.a #21	ENSGT00940000156166.a.i.b.a #22	ENSGT00940000154382.a.a.d ##26	ENSGT00940000164497	ENSGT00940000156233.xb.a #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b.e #29	ENSGT00940000158258.e.c #32	ENSGT00940000158611.i #33	ENSGT00940000154043.B.c	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000158520.f	ENSGT00940000157316.e.b.a
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00940000154930.eb.q	ENSGT00940000155060.C.a.b.e	ENSGT00390000018402.i.a	ENSGT00390000011838.p	ENSGT00940000163762.a.b.e	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b.a	ENSGT00940000163676.d	ENSGT00950000182964.a.a.g.a.a	ENSGT01100000263497.E.b.r.b.d	ENSGT00550000075010.a #15	ENSGT00940000164612.b.d	ENSGT00390000006452.b.b.g.d #19	ENSGT00950000183210.g.b.a.a #20	ENSGT00940000153846.a.a.a #21	ENSGT00940000156166.a.i.b.a #22	ENSGT00940000154382.a.a.d ##26	ENSGT00940000154382.a.a.c.a ##26	ENSGT00940000164497	ENSGT00940000156233.xb.a #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b.e #29	ENSGT00940000158258.e.c #32	ENSGT00940000158611.i #33	ENSGT01030000234836.a	ENSGT00940000154043.B.c	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000154930.eb.q	ENSGT00940000155060.C.a.b.e	ENSGT00390000018402.i.a	ENSGT00390000011838.p	ENSGT00940000163762.a.b.e	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b.a	ENSGT00940000163676.d	ENSGT00950000182964.a.a.g.a.a	ENSGT01100000263497.E.b.r.b.d	ENSGT00550000075010.a #15	ENSGT00940000164612.b.d	ENSGT00390000006452.b.b.g.d #19	ENSGT00950000183210.g.b.a.a #20	ENSGT00940000153846.a.a.a #21	ENSGT00940000156166.a.i.b.a #22	ENSGT00940000154382.a.a.d ##26	ENSGT00940000154382.a.a.c.a ##26	ENSGT00940000164497	ENSGT00940000156233.xb.a #27	ENSGT00940000166414.d	ENSGT00530000063861.b.b.e #29	ENSGT00940000158258.e.c #32	ENSGT00940000158611.i #33	ENSGT01030000234836.a	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000154930.eb.q	ENSGT00940000155060.C.a.b.e	ENSGT00390000018402.i.a	ENSGT00390000011838.p	ENSGT00940000163762.a.b.e	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b.a	ENSGT00940000163676.d	ENSGT00950000182964.a.a.g.a.a	ENSGT01100000263497.E.b.r.b.d	ENSGT00550000075010.a #15	ENSGT00940000164612.b.d	ENSGT00390000006452.b.b.g.d #19	ENSGT00950000183210.g.b.a.a #20	ENSGT00940000153846.a.a.a #21	ENSGT00940000156166.a.i.b.a #22	ENSGT00940000154382.a.a.d ##26	ENSGT00940000154382.a.a.c.a ##26	ENSGT00940000164497	ENSGT00940000156233.xb.a #27	ENSGT00940000166414.d	ENSGT00530000063861.b.b.e #29	ENSGT00940000158258.e.c #32	ENSGT00940000158611.i #33	ENSGT01030000234836.a	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a
Coho salmon	MODERN SPECIES	1	ptprfa (ENSOKIG00005015213)	SZT2 (ENSOKIG00005014749)	med8 (ENSOKIG00005014700)	pbx1b (ENSOKIG00005014646)	RGSL1 (ENSOKIG00005014614)	GLUL (ENSOKIG00005014601)	ZNF648 (ENSOKIG00005014594)	gadd45ab (ENSOKIG00005014577)	GNG12 (ENSOKIG00005014551)	dr1 (ENSOKIG00005014534) #15	scinla (ENSOKIG00005014424)	DIPK1A (ENSOKIG00005014403) #19	RPL5 (ENSOKIG00005014353) #20	ENSOKIG00005023282	EVI5 (ENSOKIG00005020525) #21	gfi1ab (ENSOKIG00005020369) #22	ENSOKIG00005020356 ##26	ENSOKIG00005020314	EPHX4 (ENSOKIG00005020288) #27	brdt (ENSOKIG00005020258)	tgfbr3 (ENSOKIG00005020192) #29	ZNF644 (ENSOKIG00005020150) #32	barhl2 (ENSOKIG00005020134) #33	ENSOKIG00005020121	LRRC8C (ENSOKIG00005020108)	uchl5 (ENSOKIG00005020077)	ENSOKIG00005020029	ENSOKIG00005020015	RGS13 (ENSOKIG00005020006)	RGS1 (ENSOKIG00005020001)	ENSOKIG00005019994
Chinook salmon	MODERN SPECIES		ptprfa (ENSOTSG00005039083)	SZT2 (ENSOTSG00005038814)	med8 (ENSOTSG00005038805)	pbx1b (ENSOTSG00005038798)	RGSL1 (ENSOTSG00005038785)	glula (ENSOTSG00005038775)	ZNF648 (ENSOTSG00005038772)	gadd45ab (ENSOTSG00005038764)	GNG12 (ENSOTSG00005038759)	dr1 (ENSOTSG00005038756) #15	scinla (ENSOTSG00005038350)	DIPK1A (ENSOTSG00005038337) #19	RPL5 (ENSOTSG00005038336) #20	ENSOTSG00005038333	EVI5 (ENSOTSG00005033839) #21	gfi1ab (ENSOTSG00005033821) #22	ENSOTSG00005033820 ##26	ENSOTSG00005033818 ##26	ENSOTSG00005033817	EPHX4 (ENSOTSG00005033816) #27	brdt (ENSOTSG00005033812)	tgfbr3 (ENSOTSG00005033810) #29	ZNF644 (ENSOTSG00005033805) #32	barhl2 (ENSOTSG00005033802) #33	ENSOTSG00005033798	LRRC8C (ENSOTSG00005033797)	uchl5 (ENSOTSG00005033785)	ENSOTSG00005033770	RGS13 (ENSOTSG00005033765)	ENSOTSG00005033763	RGS1 (ENSOTSG00005033759)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000017757	med8 (ENSOMYG00000017683)	pbx1b (ENSOMYG00000017664)	gs01 (ENSOMYG00000017643)	ENSOMYG00000017638	ENSOMYG00000049666	gadd45ab (ENSOMYG00000017628)	ENSOMYG00000017621	ENSOMYG00000069355	dr1 (ENSOMYG00000051176) #15	scinla (ENSOMYG00000016216)	DIPK1A (ENSOMYG00000016022) #19	RPL5 (ENSOMYG00000015949) #20	ENSOMYG00000056905	EVI5 (ENSOMYG00000015680) #21	gfi1ab (ENSOMYG00000015611) #22	ENSOMYG00000015600 ##26	ENSOMYG00000014925	ENSOMYG00000014909 #27	brdt (ENSOMYG00000014891)	ENSOMYG00000054530	tgfbr3 (ENSOMYG00000014847) #29	ENSOMYG00000056172	ZNF644 (ENSOMYG00000014786) #32	barhl2 (ENSOMYG00000014775) #33	ENSOMYG00000014759	LRRC8C (ENSOMYG00000014743)	ENSOMYG00000049600	uchl5 (ENSOMYG00000014643)	ENSOMYG00000014709	RGS13 (ENSOMYG00000077225)
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000154930.eb.q	ENSGT00940000155060.C.a.b.e	ENSGT00390000018402.i.a	ENSGT00390000011838.p	ENSGT00940000163762.a.b.e	ENSGT00660000095605.e	ENSGT00390000010047.g.b.b.a	ENSGT00940000163676.d	ENSGT00950000182964.a.a.g.a.a	ENSGT01100000263497.E.b.r.b.d	ENSGT00550000075010.a #15	ENSGT00940000164612.b.d	ENSGT00390000006452.b.b.g.d #19	ENSGT00950000183210.g.b.a.a #20	ENSGT00940000153846.a.a.a #21	ENSGT00940000156166.a.i.b.a #22	ENSGT00940000154382.a.a.d ##26	ENSGT00940000154382.a.a.c.a ##26	ENSGT00940000164497	ENSGT00940000156233.xb.a #27	ENSGT00940000154549.a #28	ENSGT00530000063861.b.b.e #29	ENSGT00940000158258.e.c #32	ENSGT01060000248660.f	ENSGT00940000158611.i #33	ENSGT01030000234836.b	ENSGT00940000154043.B.c	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b
Atlantic salmon	MODERN SPECIES	15	pbx1b (ENSSSAG00000068224)	RGSL1 (ENSSSAG00000068813)	ENSSSAG00000088267	ZNF648 (ENSSSAG00000094551)	gadd45ab (ENSSSAG00000121533)	ENSSSAG00000088045	ENSSSAG00000106801	nc2b (ENSSSAG00000068862) #15	ENSSSAG00000068872	ENSSSAG00000098016	ENSSSAG00000092472	ENSSSAG00000110308	DIPK1A (ENSSSAG00000043409) #19	RPL5 (ENSSSAG00000008702) #20	EVI5 (ENSSSAG00000009294) #21	gfi1ab (ENSSSAG00000009977) #22	ENSSSAG00000009982 ##26	ENSSSAG00000009987 ##26	ENSSSAG00000083040	ENSSSAG00000102207	EPHX4 (ENSSSAG00000120047) #27	ENSSSAG00000010006 #28	tgfbr3 (ENSSSAG00000010024) #29	ENSSSAG00000110844	ENSSSAG00000010045 #32	ENSSSAG00000105304	ENSSSAG00000108720	barhl2 (ENSSSAG00000114968) #33	lrrc8db (ENSSSAG00000093190)	ENSSSAG00000089059	LRRC8C (ENSSSAG00000010074)
River trout	MODERN SPECIES	33	ENSSTUG00000009071	ENSSTUG00000009078	SZT2 (ENSSTUG00000009117)	med8 (ENSSTUG00000009605)	pbx1b (ENSSTUG00000009619)	ENSSTUG00000009772	glula (ENSSTUG00000009797)	ZNF648 (ENSSTUG00000009813)	gadd45ab (ENSSTUG00000009817)	GNG12 (ENSSTUG00000009847)	dr1 (ENSSTUG00000009857) #15	scinla (ENSSTUG00000009866)	DIPK1A (ENSSTUG00000009928) #19	RPL5 (ENSSTUG00000009934) #20	EVI5 (ENSSTUG00000010108) #21	gfi1ab (ENSSTUG00000012326) #22	ENSSTUG00000012336 ##26	ENSSTUG00000012351	EPHX4 (ENSSTUG00000012372) #27	ENSSTUG00000012392 #28	tgfbr3 (ENSSTUG00000012423) #29	ZNF644 (ENSSTUG00000012460) #32	barhl2 (ENSSTUG00000012470) #33	ENSSTUG00000012484	LRRC8C (ENSSTUG00000012491)	uchl5 (ENSSTUG00000012515)	ENSSTUG00000012592	RGS13 (ENSSTUG00000012606)	ENSSTUG00000012625	RGS1 (ENSSTUG00000012645)	brinp3a.2 (ENSSTUG00000012654)
Huchen	MODERN SPECIES	46															ENSHHUG00000016422	gfi1ab (ENSHHUG00000016420) #22	ENSHHUG00000016419	EPHX4 (ENSHHUG00000016417) #27	ENSHHUG00000016386 #28	tgfbr3 (ENSHHUG00000016321) #29	ZNF644 (ENSHHUG00000016307) #32	barhl2 (ENSHHUG00000016295) #33	lrrc8db (ENSHHUG00000016291)	LRRC8C (ENSHHUG00000016275)	uchl5 (ENSHHUG00000016219)	ENSHHUG00000016204	RGS13 (ENSHHUG00000016197)	ENSHHUG00000016193	RGS1 (ENSHHUG00000016185)	brinp3a.2 (ENSHHUG00000016166)	brinp3a.1 (ENSHHUG00000016146)
Salmoninae	ANCESTRAL SPECIES	15	ENSGT00390000018402.i.b	ENSGT00390000011838.o	ENSGT00940000163762.a.b.f	ENSGT00390000010047.g.b.b.b	ENSGT00940000163676.c	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a.b	ENSGT01100000263497.E.b.r.b.c	ENSGT00550000075010.b #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b.c	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g.c #19	ENSGT00950000183210.g.b.a.b #20	ENSGT00940000153846.a.a.b #21	ENSGT00940000156166.a.i.b.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.c.b ##26	ENSGT00940000156233.xb.b #27	ENSGT00940000166414.c	ENSGT00530000063861.b.b.f #29	ENSGT00940000158258.e.d #32	ENSGT00940000158611.j #33	ENSGT00940000154043.B.d	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00390000018402.i.b	ENSGT00390000011838.o	ENSGT00940000163762.a.b.f	ENSGT00390000010047.g.b.b.b	ENSGT00940000163676.c	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a.b	ENSGT01100000263497.E.b.r.b.c	ENSGT00550000075010.b #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b.c	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g.c #19	ENSGT00950000183210.g.b.a.b #20	ENSGT00940000153846.a.a.b #21	ENSGT00940000156166.a.i.b.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.c.b ##26	ENSGT00940000156233.xb.b #27	ENSGT00940000166414.c	ENSGT00530000063861.b.b.f #29	ENSGT00940000158258.e.d #32	ENSGT01060000248660.f	ENSGT00940000158611.j #33	ENSGT00940000154043.B.d	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a
Salmo	ANCESTRAL SPECIES	14	ENSGT00390000018402.i.b	ENSGT00390000011838.o	ENSGT00940000163762.a.b.f	ENSGT00390000010047.g.b.b.b	ENSGT00940000163676.c	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a.b	ENSGT01100000263497.E.b.r.b.c	ENSGT00550000075010.b #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b.c	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g.c #19	ENSGT00950000183210.g.b.a.b #20	ENSGT00940000153846.a.a.b #21	ENSGT00940000156166.a.i.b.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.c.b ##26	ENSGT00940000156233.xb.b #27	ENSGT00940000166414.c	ENSGT00530000063861.b.b.f #29	ENSGT00940000158258.e.d #32	ENSGT00940000158611.j #33	ENSGT00940000154043.B.d	ENSGT00940000159250.m.c	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b
Atlantic salmon	MODERN SPECIES	1	med8 (ENSSSAG00000047902)	pbx1b (ENSSSAG00000046818)	ENSSSAG00000046786	ENSSSAG00000046774	ENSSSAG00000092029	ENSSSAG00000116852	gadd45ab (ENSSSAG00000046763)	ENSSSAG00000092599	dr1 (ENSSSAG00000097862) #15	zgc:109982 (ENSSSAG00000046730)	scinla (ENSSSAG00000043554)	ENSSSAG00000043426 #16	DIPK1A (ENSSSAG00000069161) #19	rpl5a (ENSSSAG00000031075) #20	EVI5 (ENSSSAG00000038949) #21	gfi1ab (ENSSSAG00000038567) #22	glmnb (ENSSSAG00000038486) #24	ENSSSAG00000092033 #25	ENSSSAG00000114167 ##26	EPHX4 (ENSSSAG00000037612) #27	brdt (ENSSSAG00000037228)	tgfbr3 (ENSSSAG00000035831) #29	ZNF644 (ENSSSAG00000035219) #32	barhl2 (ENSSSAG00000035014) #33	lrrc8db (ENSSSAG00000034892)	LRRC8C (ENSSSAG00000089301)	LRRC8C (ENSSSAG00000030668)	glrx2 (ENSSSAG00000030560)	uchl5 (ENSSSAG00000028321)	RGS2 (ENSSSAG00000027956)	RGS13 (ENSSSAG00000027762)
River trout	MODERN SPECIES	14	pbx1b (ENSSTUG00000003938)	ENSSTUG00000003895	glula (ENSSTUG00000003802)	ENSSTUG00000003784	ENSSTUG00000003655	gadd45ab (ENSSTUG00000003635)	GNG12 (ENSSTUG00000003603)	dr1 (ENSSTUG00000003588) #15	zgc:109982 (ENSSTUG00000003583)	scinla (ENSSTUG00000003506)	ENSSTUG00000003490	ENSSTUG00000003473 #16	DIPK1A (ENSSTUG00000003439) #19	RPL5 (ENSSTUG00000003341) #20	EVI5 (ENSSTUG00000003130) #21	gfi1ab (ENSSTUG00000003093) #22	glmnb (ENSSTUG00000002992) #24	C1orf146 (ENSSTUG00000002969) #25	ENSSTUG00000002944 ##26	EPHX4 (ENSSTUG00000002930) #27	brdt (ENSSTUG00000002903)	tgfbr3 (ENSSTUG00000002828) #29	ZNF644 (ENSSTUG00000002800) #32	barhl2 (ENSSTUG00000002784) #33	rpl30 (ENSSTUG00000002781)	lrrc8db (ENSSTUG00000002773)	LRRC8C (ENSSTUG00000002738)	glrx2 (ENSSTUG00000002604)	uchl5 (ENSSTUG00000002644)	ENSSTUG00000002593	RGS13 (ENSSTUG00000002578)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00390000005462.k	ENSGT00390000011838.o	ENSGT00940000163762.a.b.f	ENSGT00390000010047.g.b.b.b	ENSGT00940000163676.c	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a.b	ENSGT01100000263497.E.b.r.b.c	ENSGT00550000075010.b #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b.c	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g.c #19	ENSGT00950000183210.g.b.a.b #20	ENSGT00940000153846.a.a.b #21	ENSGT00940000156166.a.i.b.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.c.b ##26	ENSGT00940000156233.xb.b #27	ENSGT00940000166414.c	ENSGT00530000063861.b.b.f #29	ENSGT00940000158258.e.d #32	ENSGT01060000248660.f	ENSGT00940000158611.j #33	ENSGT00940000154043.B.d	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00390000011838.o	ENSGT00940000163762.a.b.f	ENSGT00390000010047.g.b.b.b	ENSGT00940000163676.c	ENSGT00940000160138	ENSGT00950000182964.a.a.g.a.b	ENSGT01100000263497.E.b.r.b.c	ENSGT01000000222023	ENSGT00550000075010.b #15	ENSGT00940000155412.a.b	ENSGT00940000164612.b.c	ENSGT00940000153190.A.h #16	ENSGT00390000006452.b.b.g.c #19	ENSGT00950000183210.g.b.a.b #20	ENSGT00940000153846.a.a.b #21	ENSGT00940000156166.a.i.b.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.c.b ##26	ENSGT00940000156233.xb.b #27	ENSGT00940000166414.c	ENSGT00530000063861.b.b.f #29	ENSGT00940000158258.e.d #32	ENSGT01060000248660.f	ENSGT00940000158611.j #33	ENSGT00940000154043.B.d	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	znf277 (ENSOTSG00005025346)	ENSOTSG00005025340	glula (ENSOTSG00005025338)	ZNF648 (ENSOTSG00005025336)	ENSOTSG00005025332	gadd45ab (ENSOTSG00005025330)	GNG12 (ENSOTSG00005025329)	ENSOTSG00005025328	dr1 (ENSOTSG00005025327) #15	zgc:109982 (ENSOTSG00005025326)	scinla (ENSOTSG00005024650)	ENSOTSG00005024637 #16	DIPK1A (ENSOTSG00005024634) #19	RPL5 (ENSOTSG00005024515) #20	EVI5 (ENSOTSG00005021825) #21	gfi1ab (ENSOTSG00005021812) #22	glmnb (ENSOTSG00005021810) #24	C1orf146 (ENSOTSG00005021806) #25	ENSOTSG00005021804 ##26	EPHX4 (ENSOTSG00005021803) #27	brdt (ENSOTSG00005021801)	tgfbr3 (ENSOTSG00005021800) #29	ZNF644 (ENSOTSG00005021798) #32	ENSOTSG00005021797	barhl2 (ENSOTSG00005021795) #33	lrrc8db (ENSOTSG00005021794)	LRRC8C (ENSOTSG00005021792)	glrx2 (ENSOTSG00005021788)	uchl5 (ENSOTSG00005021766)	ENSOTSG00005021765	RGS13 (ENSOTSG00005021764)
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005035209	pbx1b (ENSOTSG00005035049)	glula (ENSOTSG00005035046)	ZNF648 (ENSOTSG00005035044)	ENSOTSG00005035041	gadd45ab (ENSOTSG00005035039)	GNG12 (ENSOTSG00005035038)	ENSOTSG00005035035	dr1 (ENSOTSG00005035033) #15	zgc:109982 (ENSOTSG00005035031)	scinla (ENSOTSG00005034627)	ENSOTSG00005034626 #16	DIPK1A (ENSOTSG00005034625) #19	RPL5 (ENSOTSG00005034450) #20	EVI5 (ENSOTSG00005034166) #21	gfi1ab (ENSOTSG00005034163) #22	glmnb (ENSOTSG00005034159) #24	C1orf146 (ENSOTSG00005034156) #25	ENSOTSG00005034154 ##26	EPHX4 (ENSOTSG00005034152) #27	brdt (ENSOTSG00005034148)	tgfbr3 (ENSOTSG00005034146) #29	ZNF644 (ENSOTSG00005034141) #32	ENSOTSG00005034140	barhl2 (ENSOTSG00005034138) #33	lrrc8db (ENSOTSG00005034137)	LRRC8C (ENSOTSG00005034136)	glrx2 (ENSOTSG00005034135)	uchl5 (ENSOTSG00005034108)	ENSOTSG00005034106	RGS13 (ENSOTSG00005034105)
Coho salmon	MODERN SPECIES	4	hyi (ENSOKIG00005044713)	med8 (ENSOKIG00005044736)	pbx1b (ENSOKIG00005044767)	GLUL (ENSOKIG00005044865)	ZNF648 (ENSOKIG00005044896)	ENSOKIG00005044920	gadd45ab (ENSOKIG00005044931)	GNG12 (ENSOKIG00005044946)	ENSOKIG00005044966	dr1 (ENSOKIG00005044978) #15	zgc:109982 (ENSOKIG00005044990)	scinla (ENSOKIG00005045044)	DIPK1A (ENSOKIG00005045329) #19	RPL5 (ENSOKIG00005045340) #20	EVI5 (ENSOKIG00005045535) #21	gfi1ab (ENSOKIG00005047221) #22	glmnb (ENSOKIG00005047235) #24	C1orf146 (ENSOKIG00005047253) #25	ENSOKIG00005047259 ##26	EPHX4 (ENSOKIG00005047274) #27	brdt (ENSOKIG00005047287)	tgfbr3 (ENSOKIG00005047322) #29	ZNF644 (ENSOKIG00005047395) #32	ENSOKIG00005047407	barhl2 (ENSOKIG00005047423) #33	ENSOKIG00005047430	ENSOKIG00005047432	ENSOKIG00005047438	LRRC8C (ENSOKIG00005047457)	glrx2 (ENSOKIG00005047505)	uchl5 (ENSOKIG00005047517)
Rainbow trout	MODERN SPECIES	26	pbx1b (ENSOMYG00000015967)	ENSOMYG00000015950	ENSOMYG00000015940	ENSOMYG00000047976	ENSOMYG00000015924	gadd45ab (ENSOMYG00000015910)	ENSOMYG00000072063	dr1 (ENSOMYG00000015885) #15	zgc:109982 (ENSOMYG00000015847)	ENSOMYG00000064294	scinla (ENSOMYG00000015589)	ENSOMYG00000067573 #16	DIPK1A (ENSOMYG00000015489) #19	RPL5 (ENSOMYG00000015440) #20	EVI5 (ENSOMYG00000013152) #21	gfi1ab (ENSOMYG00000012945) #22	glmnb (ENSOMYG00000012923) #24	C1orf146 (ENSOMYG00000012907) #25	ENSOMYG00000012900 ##26	ENSOMYG00000071250	ENSOMYG00000012889 #27	brdt (ENSOMYG00000012881)	tgfbr3 (ENSOMYG00000012783) #29	ZNF644 (ENSOMYG00000012730) #32	barhl2 (ENSOMYG00000012717) #33	ENSOMYG00000067000	LRRC8C (ENSOMYG00000012682)	ENSOMYG00000052735	glrx2 (ENSOMYG00000012634)	uchl5 (ENSOMYG00000012576)	ENSOMYG00000012552
Huchen	MODERN SPECIES	978									dr1 (ENSHHUG00000034312) #15	zgc:109982 (ENSHHUG00000034316)	scinla (ENSHHUG00000034322)	ENSHHUG00000034410 #16	DIPK1A (ENSHHUG00000034447) #19	RPL5 (ENSHHUG00000034455) #20	EVI5 (ENSHHUG00000034489) #21	gfi1ab (ENSHHUG00000034836) #22	glmnb (ENSHHUG00000034841) #24	C1orf146 (ENSHHUG00000034884) #25	ENSHHUG00000034888 ##26	EPHX4 (ENSHHUG00000034891) #27	brdt (ENSHHUG00000034899)	tgfbr3 (ENSHHUG00000034925) #29	ZNF644 (ENSHHUG00000034926) #32	ENSHHUG00000034931	barhl2 (ENSHHUG00000034934) #33
Northern pike	MODERN SPECIES	7	ENSELUG00000032995	hyi (ENSELUG00000002519)	SZT2 (ENSELUG00000002583)	med8 (ENSELUG00000002630)	pbx1b (ENSELUG00000002662)	glula (ENSELUG00000002681)	ENSELUG00000002686	ENSELUG00000002817	gadd45ab (ENSELUG00000002845)	ENSELUG00000033386	dr1 (ENSELUG00000002858) #15	scinla (ENSELUG00000002882)	DIPK1A (ENSELUG00000002902) #19	RPL5 (ENSELUG00000002919) #20	EVI5 (ENSELUG00000002988) #21	gfi1ab (ENSELUG00000003015) #22	glmnb (ENSELUG00000000092) #24	C1orf146 (ENSELUG00000003064) #25	ENSELUG00000032475 ##26	ENSELUG00000003095	EPHX4 (ENSELUG00000000100) #27	brdt (ENSELUG00000003157)	tgfbr3 (ENSELUG00000003191) #29	ENSELUG00000003210 #32	barhl2 (ENSELUG00000003235) #33	ENSELUG00000029815	LRRC8C (ENSELUG00000003256)	glrx2 (ENSELUG00000003270)	uchl5 (ENSELUG00000003300)	ENSELUG00000003314	RGS13 (ENSELUG00000031770)
Otomorpha	ANCESTRAL SPECIES	59	ENSGT00950000182993.B.a.c	ENSGT01050000244902.a.a.b	ENSGT00530000063561	ENSGT00390000003860.hb	ENSGT00940000153665.b.a.b	ENSGT00940000155505.a.a	ENSGT00950000182964.a.a.g.b	ENSGT01100000263497.E.b.r.a	ENSGT00390000005897.j	ENSGT00940000164612.a	ENSGT00940000153190.A.g #16	ENSGT00950000183180.b #18	ENSGT00390000006452.b.b.h #19	ENSGT00950000183210.g.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.k.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT01060000248660	ENSGT00940000158611 #33	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000155827
Otophysi	ANCESTRAL SPECIES	32	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00530000063614.a.a	ENSGT00940000166460	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k	ENSGT00390000010760.f	ENSGT00900000141090	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000157095	ENSGT00390000000191.l	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00940000156577.a	ENSGT00940000153190.B.b ##16
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00530000063614.a.a	ENSGT00940000166460	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k	ENSGT00390000010760.f	ENSGT00900000141090	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000157095	ENSGT00390000000191.l	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00940000156577.a	ENSGT00940000153190.B.b ##16
Channel catfish	MODERN SPECIES	2	usp13 (ENSIPUG00000008925)	ndufb5 (ENSIPUG00000009024)	mrpl47 (ENSIPUG00000009200)	ACTL6A (ENSIPUG00000009096)	tmem131 (ENSIPUG00000009232)	si:ch211-201h21.5 (ENSIPUG00000009356)	bivm (ENSIPUG00000009377)	zgc:172121 (ENSIPUG00000009391)	nme7 (ENSIPUG00000009418)	atp1b1a (ENSIPUG00000009526)	dpt (ENSIPUG00000009582)	zbtb11 (ENSIPUG00000009604)	DIPK1A (ENSIPUG00000009639) #19	rpl5b (ENSIPUG00000009689) #20	evi5 (ENSIPUG00000009873) #21	gfi1ab (ENSIPUG00000010071) #22	glmnb (ENSIPUG00000010098) #24	c11h1orf146 (ENSIPUG00000010133) #25	tomm70 (ENSIPUG00000010157)	tbc1d23 (ENSIPUG00000010243)	tp63 (ENSIPUG00000010314)	TPRG1L (ENSIPUG00000010351)	lpp (ENSIPUG00000010396)	bcl6 (ENSIPUG00000010505)	smx5 (ENSIPUG00000010539)	inpp5d (ENSIPUG00000010594)	gpr17 (ENSIPUG00000011042)	ENSIPUG00000011055	ENSIPUG00000011151	SAP130 (ENSIPUG00000011200)	amotl2 (ENSIPUG00000011317)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00530000063614.a.a	ENSGT00940000166460	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k	ENSGT00390000010760.f	ENSGT00900000141090	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000157095	ENSGT00390000000191.l	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00940000156577.a	ENSGT00940000153190.B.b ##16
Electric eel	MODERN SPECIES	112																gfi1ab (ENSEEEG00000006047) #22	glmnb (ENSEEEG00000006043) #24	C1orf146 (ENSEEEG00000006041) #25	tomm70a (ENSEEEG00000005859)	tbc1d23 (ENSEEEG00000005678)	tp63 (ENSEEEG00000005574)	tprg1 (ENSEEEG00000005568)	lpp (ENSEEEG00000005566)	bcl6aa (ENSEEEG00000005565)	si:ch73-14h10.2 (ENSEEEG00000005559)	INPP5D (ENSEEEG00000005547)	GPR17 (ENSEEEG00000005535)	ENSEEEG00000005493	sap130a (ENSEEEG00000005481)	amotl2a (ENSEEEG00000005477)	cep63 (ENSEEEG00000005474) ##16
Characoidei	ANCESTRAL SPECIES		ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00530000063614.a.a	ENSGT00940000166460	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k	ENSGT00390000010760.f	ENSGT00900000141090	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000157095	ENSGT00390000000191.l	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00940000156577.a	ENSGT00940000153190.B.b ##16
Red-bellied piranha	MODERN SPECIES	54	usp13 (ENSPNAG00000026639)	ndufb5 (ENSPNAG00000007145)	mrpl47 (ENSPNAG00000026692)	actl6a (ENSPNAG00000026758)	TMEM131 (ENSPNAG00000026787)	si:ch211-201h21.5 (ENSPNAG00000005032)	BIVM (ENSPNAG00000026906)	zgc:172121 (ENSPNAG00000005724)	nme7 (ENSPNAG00000005268)	atp1b1a (ENSPNAG00000027045)	dpt (ENSPNAG00000027075)	zbtb11 (ENSPNAG00000027087)	DIPK1A (ENSPNAG00000027122) #19	rpl5b (ENSPNAG00000004187) #20	EVI5 (ENSPNAG00000027233) #21	gfi1ab (ENSPNAG00000027258) #22	glmnb (ENSPNAG00000027342) #24	C1orf146 (ENSPNAG00000006150) #25	tomm70a (ENSPNAG00000027449)	tbc1d23 (ENSPNAG00000027529)	tp63 (ENSPNAG00000027569)	tprg1 (ENSPNAG00000006916)	ENSPNAG00000005275	lpp (ENSPNAG00000006107)	bcl6aa (ENSPNAG00000005219)	si:ch73-14h10.2 (ENSPNAG00000027769)	INPP5D (ENSPNAG00000027826)	GPR17 (ENSPNAG00000027848)	ENSPNAG00000004296	sap130a (ENSPNAG00000028207)	amotl2a (ENSPNAG00000028228)
Mexicana tetra	MODERN SPECIES	171	actl6a (ENSAMXG00000011893)	TMEM131 (ENSAMXG00000011864)	si:ch211-201h21.5 (ENSAMXG00000035927)	BIVM (ENSAMXG00000011848)	zgc:172121 (ENSAMXG00000011842)	nme7 (ENSAMXG00000011837)	ENSAMXG00000038001	ENSAMXG00000034041	atp1b1a (ENSAMXG00000036612)	dpt (ENSAMXG00000042958)	zbtb11 (ENSAMXG00000011813)	DIPK1A (ENSAMXG00000044089) #19	rpl5b (ENSAMXG00000004832) #20	EVI5 (ENSAMXG00000004833) #21	ENSAMXG00000038279	gfi1ab (ENSAMXG00000039600) #22	glmnb (ENSAMXG00000004836) #24	C1orf146 (ENSAMXG00000004838) #25	tomm70a (ENSAMXG00000004840)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000157401	ENSGT00390000009980	ENSGT00390000002837	ENSGT00940000156305	ENSGT00530000063614.a.a	ENSGT00940000166460	ENSGT00510000048601.a	ENSGT00510000049619	ENSGT00940000158946	ENSGT01030000234579.C.k	ENSGT00390000010760.f	ENSGT00900000141090	ENSGT00390000006452.b.b.g #19	ENSGT00950000183210.g.a.a #20	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000157095	ENSGT00390000000191.l	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311.b.a	ENSGT00390000016597	ENSGT00940000156202.a	ENSGT01100000263537.b.a.a.b.a	ENSGT00940000157247.a.a	ENSGT00440000037733.f	ENSGT00940000156577.a	ENSGT00940000153190.B.b ##16
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	41	ENSGT00940000155931.a.a	ENSGT00940000157401.d	ENSGT00390000009980.g.b	ENSGT00940000156305.m	ENSGT00530000063614.a.a.xb	ENSGT00940000166460.d	ENSGT00510000048601.a.m	ENSGT00510000049619.b	ENSGT00940000158946.c	ENSGT01030000234579.C.k.a.a	ENSGT00390000010760.f.d	ENSGT00900000141090.n	ENSGT00390000006452.b.b.g.a #19	ENSGT00950000183210.g.a.a.a #20	ENSGT00940000153846.a.a.d.b #21	ENSGT00940000156166.a.i.b.c.a #22	ENSGT00390000018446.a.b #24	ENSGT00390000008285.c #25	ENSGT00940000157095.c	ENSGT00390000000191.l.a	ENSGT00950000183153.c.b.a.a.e.a	ENSGT00390000001652.f.b.c	ENSGT00940000156022.b.g	ENSGT00940000156311.b.a.g	ENSGT00390000016597	ENSGT00940000156202.a.e	ENSGT01100000263537.b.a.a.b.a.e	ENSGT00940000157247.a.a.a	ENSGT00440000037733.f.b	ENSGT00940000156577.a.a	ENSGT00940000153190.B.b.b ##16
Goldfish	MODERN SPECIES	24	PEX5L (ENSCARG00000066782)	usp13 (ENSCARG00000066836)	ndufb5 (ENSCARG00000066950)	ACTL6A (ENSCARG00000066963)	TMEM131 (ENSCARG00000067064)	si:ch211-201h21.5 (ENSCARG00000067367)	BIVM (ENSCARG00000067375)	zgc:172121 (ENSCARG00000067403)	nme7 (ENSCARG00000067427)	atp1b1a (ENSCARG00000067515)	dpt (ENSCARG00000067530)	zbtb11 (ENSCARG00000067542)	DIPK1A (ENSCARG00000067616) #19	rpl5b (ENSCARG00000067626) #20	EVI5 (ENSCARG00000067652) #21	gfi1ab (ENSCARG00000067884) #22	glmnb (ENSCARG00000067898) #24	C1orf146 (ENSCARG00000067925) #25	tomm70a (ENSCARG00000067955)	tbc1d23 (ENSCARG00000068136)	tp63 (ENSCARG00000068357)	tprg1 (ENSCARG00000069108)	lpp (ENSCARG00000069118)	bcl6aa (ENSCARG00000069133)	LSM2 (ENSCARG00000069139)	ENSCARG00000069194	GPR17 (ENSCARG00000069358)	MYO7B (ENSCARG00000069444)	sap130a (ENSCARG00000069664)	amotl2a (ENSCARG00000069775)	cep63 (ENSCARG00000069778) ##16
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00940000155931.a.a	ENSGT00940000157401.d	ENSGT00390000009980.g.b	ENSGT00940000156305.n.b	ENSGT00530000063614.a.a.xb	ENSGT00940000166460.d	ENSGT00510000048601.a.m	ENSGT00510000049619.b	ENSGT00940000158946.c	ENSGT01030000234579.C.k.a.a	ENSGT00390000010760.f.d	ENSGT00900000141090.n.a	ENSGT00390000006452.b.b.g.a #19	ENSGT00950000183210.g.a.a.a #20	ENSGT00940000153846.a.a.d.b #21	ENSGT00940000156166.a.i.b.c.a #22	ENSGT00390000018446.a.b #24	ENSGT00390000008285.c #25	ENSGT00940000157095.c	ENSGT00390000000191.l.a	ENSGT00950000183153.c.b.a.a.e.a	ENSGT00390000001652.f.b.c	ENSGT00940000156022.b.g	ENSGT00940000156311.b.a.g	ENSGT00390000016597	ENSGT00940000156202.a.e	ENSGT01100000263537.b.a.a.b.a.e	ENSGT00940000157247.a.a.a	ENSGT00440000037733.f.b	ENSGT00940000156577.a.a	ENSGT00940000153190.B.b.b ##16
Golden-line barbel	MODERN SPECIES	1075				ENSSGRG00000025259	SCARF2 (ENSSGRG00000025257)	zgc:112294 (ENSSGRG00000025256)	CABP7 (ENSSGRG00000025254)	ENSSGRG00000025253	nf2a (ENSSGRG00000025252)	FBXO21 (ENSSGRG00000025249)	tesca (ENSSGRG00000025247)	zbtb11 (ENSSGRG00000025184)	DIPK1A (ENSSGRG00000025163) #19	rpl5b (ENSSGRG00000025158) #20	EVI5 (ENSSGRG00000023789) #21	gfi1ab (ENSSGRG00000023754) #22	glmnb (ENSSGRG00000023752) #24	C1orf146 (ENSSGRG00000023751) #25
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000156166.a.i.b.c.b #22
Goldfish	MODERN SPECIES	46	usp13 (ENSCARG00000000499)	ndufb5 (ENSCARG00000000403)	mrpl47 (ENSCARG00000000396)	actl6a (ENSCARG00000000347)	si:ch211-201h21.5 (ENSCARG00000000279)	BIVM (ENSCARG00000000259)	zgc:172121 (ENSCARG00000000230)	nme7 (ENSCARG00000000194)	atp1b1a (ENSCARG00000026358)	dpt (ENSCARG00000026349)	TMEM131 (ENSCARG00000024215)	ENSCARG00000024130	DIPK1A (ENSCARG00000024043) #19	rpl5b (ENSCARG00000024020) #20	EVI5 (ENSCARG00000023843) #21	gfi1ab (ENSCARG00000023817) #22	ENSCARG00000023812	tbc1d23 (ENSCARG00000023010)	tp63 (ENSCARG00000020523)	tprg1 (ENSCARG00000020410)	lpp (ENSCARG00000020387)	bcl6aa (ENSCARG00000020344)	LSM2 (ENSCARG00000020328)	INPP5D (ENSCARG00000019090)	GPR17 (ENSCARG00000019002)	ENSCARG00000018724	amotl2a (ENSCARG00000018685)	im:7152348 (ENSCARG00000018676)	rab6ba (ENSCARG00000018468)	SLCO2A1 (ENSCARG00000018393)	ryk (ENSCARG00000017918)
Cyprininae	ANCESTRAL SPECIES	12	ENSGT00940000155931.a.b	ENSGT00940000157401.c	ENSGT00390000009980.g.a	ENSGT00390000002837	ENSGT00940000156305.n.a	ENSGT00530000063614.a.a.wb	ENSGT00940000166460.c	ENSGT00510000048601.a.n	ENSGT00510000049619.a	ENSGT00940000158946.d	ENSGT01030000234579.C.k.b	ENSGT00390000010760.f.c	ENSGT00390000006452.b.b.g.b #19	ENSGT00950000183210.g.a.a.b #20	ENSGT00940000153846.a.a.d.a #21	ENSGT00940000156166.a.i.b.d #22	ENSGT00390000018446.a.a #24	ENSGT00390000008285.d #25	ENSGT00940000157095.d	ENSGT00390000000191.l.b	ENSGT00950000183153.c.b.a.a.e.b	ENSGT00390000001652.f.b.d	ENSGT00940000156022.b.h	ENSGT00940000156311.b.a.h	ENSGT00940000156202.a.f	ENSGT01100000263537.b.a.a.b.a.f	ENSGT00940000157247.a.a.b	ENSGT00440000037733.f.a	ENSGT00940000156577.a.b	ENSGT00940000153190.B.b.a ##16	ENSGT00730000112922
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT00390000002837	ENSGT00940000156305.n.a	ENSGT00530000063614.a.a.wb	ENSGT00940000166460.c	ENSGT00510000048601.a.n	ENSGT00510000049619.a	ENSGT00940000158946.d	ENSGT01030000234579.C.k.a.b	ENSGT00940000166950	ENSGT01030000234579.C.k.b	ENSGT00390000010760.f.c	ENSGT00900000141090.n.b	ENSGT00390000006452.b.b.g.b #19	ENSGT00950000183210.g.a.a.b #20	ENSGT00940000153846.a.a.d.a #21	ENSGT00940000156166.a.i.b.d #22	ENSGT00390000018446.a.a #24	ENSGT00390000008285.d #25	ENSGT00940000157095.d	ENSGT00390000000191.l.b	ENSGT00950000183153.c.b.a.a.e.b	ENSGT00390000001652.f.b.d	ENSGT00940000156022.b.h	ENSGT00940000156311.b.a.h	ENSGT00940000156202.a.f	ENSGT01100000263537.b.a.a.b.a.f	ENSGT00940000157247.a.a.b	ENSGT00440000037733.f.a	ENSGT00940000156577.a.b	ENSGT00940000153190.B.b.a ##16	ENSGT00730000112922
Common carp reference	MODERN SPECIES	10	usp13 (ENSCCRG00000081978)	ndufb5 (ENSCCRG00000024735)	mrpl47 (ENSCCRG00000024741)	actl6a (ENSCCRG00000024746)	ENSCCRG00000048890	si:ch211-201h21.5 (ENSCCRG00000048894)	ENSCCRG00000048896	zgc:172121 (ENSCCRG00000080287)	ENSCCRG00000048875	atp1b1a (ENSCCRG00000067632)	dpt (ENSCCRG00000048884)	zbtb11 (ENSCCRG00000007686)	DIPK1A (ENSCCRG00000029301) #19	rpl5b (ENSCCRG00000029284) #20	EVI5 (ENSCCRG00000013487) #21	gfi1ab (ENSCCRG00000021712) #22	glmnb (ENSCCRG00000024676) #24	ENSCCRG00000073892 #25	tomm70a (ENSCCRG00000011556)	tbc1d23 (ENSCCRG00000011457)	tp63 (ENSCCRG00000038305)	tprg1 (ENSCCRG00000037071)	lpp (ENSCCRG00000003617)	bcl6aa (ENSCCRG00000029746)	ENSCCRG00000030619	ENSCCRG00000068649	ENSCCRG00000074822	sap130a (ENSCCRG00000033891)	amotl2a (ENSCCRG00000016796)	cep63 (ENSCCRG00000045547) ##16	im:7152348 (ENSCCRG00000062391)
Zebrafish	MODERN SPECIES	21	usp13 (ENSDARG00000079198)	ndufb5 (ENSDARG00000070824)	mrpl47 (ENSDARG00000075743)	actl6a (ENSDARG00000070828)	TMEM131 (ENSDARG00000056259)	si:ch211-201h21.5 (ENSDARG00000056203)	BIVM (ENSDARG00000061409)	zgc:172121 (ENSDARG00000034430)	nme7 (ENSDARG00000056193)	atp1b1a (ENSDARG00000013144)	dpt (ENSDARG00000056178)	zbtb11 (ENSDARG00000017886)	DIPK1A (ENSDARG00000061362) #19	rpl5b (ENSDARG00000015862) #20	EVI5 (ENSDARG00000070839) #21	gfi1ab (ENSDARG00000044457) #22	glmnb (ENSDARG00000010958) #24	tomm70a (ENSDARG00000029639)	tbc1d23 (ENSDARG00000044357)	tp63 (ENSDARG00000044356)	tprg1 (ENSDARG00000056026)	ENSDARG00000114184	lpp (ENSDARG00000023578)	bcl6aa (ENSDARG00000070864)	LSM2 (ENSDARG00000103066)	smx5 (ENSDARG00000070867)	INPP5D (ENSDARG00000074283)	GPR17 (ENSDARG00000062030)	ENSDARG00000094521	MYO7B (ENSDARG00000044441)	sap130a (ENSDARG00000056924)
Clupeiformes	ANCESTRAL SPECIES	19	ENSGT00940000154967.b.b.b	ENSGT00940000155117.f.a	ENSGT00940000164211	ENSGT00940000155195	ENSGT00940000157937.a	ENSGT00940000157937.b	ENSGT00940000158520.e.b	ENSGT00940000158520.f	ENSGT00940000166731.a	ENSGT00390000011058.b	ENSGT00940000155387.d	ENSGT00940000159593	ENSGT00940000165728.h	ENSGT00940000166572	ENSGT00940000153846.a.a.d #21	ENSGT00940000156166.a.i.b #22	ENSGT00390000018446.a #24	ENSGT00390000008285 #25	ENSGT00940000154382.a.a.k.a ##26	ENSGT00940000164497	ENSGT00940000156233 #27	ENSGT00940000166414	ENSGT00530000063861.b.b #29	ENSGT00940000158258.e #32	ENSGT00940000158611 #33	ENSGT01030000234836	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000155827	ENSGT00940000154339	ENSGT01100000263614
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000016492	b3galt2 (ENSCHAG00000016481)	glrx2 (ENSCHAG00000016407)	uchl5 (ENSCHAG00000016316)	rgs2 (ENSCHAG00000016310)	RGS13 (ENSCHAG00000016294)	ENSCHAG00000016276	ENSCHAG00000016170	ENSCHAG00000016150	ENSCHAG00000016131	ENSCHAG00000016121	P3H2 (ENSCHAG00000016002)	si:ch211-129c21.1 (ENSCHAG00000015792)	scamp4 (ENSCHAG00000015771)	EVI5 (ENSCHAG00000014035) #21	gfi1ab (ENSCHAG00000013954) #22	glmnb (ENSCHAG00000013948) #24	C1orf146 (ENSCHAG00000013925) #25	ENSCHAG00000013915 ##26	ENSCHAG00000013911	EPHX4 (ENSCHAG00000013899) #27	brdt (ENSCHAG00000013886)	tgfbr3 (ENSCHAG00000013793) #29	ENSCHAG00000013781	ENSCHAG00000013767	barhl2 (ENSCHAG00000013744) #33	ENSCHAG00000013725	LRRC8C (ENSCHAG00000013713)	LRRC8B (ENSCHAG00000013703)	kyat3.2 (ENSCHAG00000012758)	pkn2b (ENSCHAG00000007530)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Denticle herring	MODERN SPECIES	10	ENSDCDG00000029660	ENSDCDG00000029657	b3galt2 (ENSDCDG00000029655)	glrx2 (ENSDCDG00000029653)	uchl5 (ENSDCDG00000029647)	ENSDCDG00000029646	RGS13 (ENSDCDG00000029645)	ENSDCDG00000029636	ENSDCDG00000029622	ENSDCDG00000029611	ENSDCDG00000029605	P3H2 (ENSDCDG00000029601)	si:ch211-129c21.1 (ENSDCDG00000029588)	scamp4 (ENSDCDG00000029579)	EVI5 (ENSDCDG00000028906) #21	gfi1ab (ENSDCDG00000028885) #22	glmnb (ENSDCDG00000028881) #24	C1orf146 (ENSDCDG00000028880) #25	ENSDCDG00000028873	EPHX4 (ENSDCDG00000028865) #27	brdt (ENSDCDG00000028858)	tgfbr3 (ENSDCDG00000028852) #29	ZNF644 (ENSDCDG00000028848) #32	barhl2 (ENSDCDG00000028843) #33	ENSDCDG00000028840	LRRC8C (ENSDCDG00000028838)	KYAT3 (ENSDCDG00000028786)	pkn2b (ENSDCDG00000024148)	ENSDCDG00000024053	ENSDCDG00000024046	lmo4b (ENSDCDG00000024037)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Tiger tail seahorse	MODERN SPECIES	426	sec22bb (ENSHCOG00000008099)	ENSHCOG00000000776	ENSHCOG00000008126	ENSHCOG00000008133	anapc4 (ENSHCOG00000008175)	ENSHCOG00000008181	ENSHCOG00000008205	ENSHCOG00000008213	ENSHCOG00000008221	ENSHCOG00000008227	ENSHCOG00000008234	PALLD (ENSHCOG00000000271)	sh3rf1 (ENSHCOG00000008372)	rpl5b (ENSHCOG00000008395) #20	EVI5 (ENSHCOG00000008562) #21	GFI1 (ENSHCOG00000008590) #22	ENSHCOG00000008601	glmnb (ENSHCOG00000008625) #24	C1orf146 (ENSHCOG00000008647) #25	ENSHCOG00000008654 ##26	EPHX4 (ENSHCOG00000008668) #27	brdt (ENSHCOG00000008693)	tgfbr3 (ENSHCOG00000008722) #29	barhl2 (ENSHCOG00000008737) #33	lrrc8db (ENSHCOG00000008743)	LRRC8C (ENSHCOG00000008752)	kyat3.2 (ENSHCOG00000008799)	lmo4b (ENSHCOG00000008813)	HS2ST1 (ENSHCOG00000008827)	ENSHCOG00000008842
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Midas cichlid	MODERN SPECIES	688	ENSACIG00000001604	ENSACIG00000001631	LRRTM4 (ENSACIG00000001696)	ENSACIG00000001703	tmem230a (ENSACIG00000001747)	ENSACIG00000001757	dpysl2b (ENSACIG00000001763)	bnip3lb (ENSACIG00000001797)	ppp2r2ab (ENSACIG00000001814)	ENSACIG00000001839	gsna (ENSACIG00000001851)	stom (ENSACIG00000001895)	ENSACIG00000001993	GTF3C4 (ENSACIG00000002002)	tsc1b (ENSACIG00000002057)	ENSACIG00000002180 #22	GFI1B (ENSACIG00000002190)	GTF3C5 (ENSACIG00000002202)	CEL (ENSACIG00000002226)
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000156166.a.j #22
Tongue sole	MODERN SPECIES	11	prdx6 (ENSCSEG00000008170)	plpp6 (ENSCSEG00000008186)	ENSCSEG00000008202	ENSCSEG00000008215	SLC18A1 (ENSCSEG00000008225)	ENSCSEG00000008240	ENSCSEG00000008245	ENSCSEG00000008249	NHS (ENSCSEG00000008258)	ENSCSEG00000008275	LRRC8C (ENSCSEG00000008278)	ENSCSEG00000008280 #16	zgc:109982 (ENSCSEG00000008283)	dr1 (ENSCSEG00000008302) #15	ENSCSEG00000008309 #21	ENSCSEG00000008345 #22	C1orf146 (ENSCSEG00000008350) #25	ENSCSEG00000008362 ##26	EPHX4 (ENSCSEG00000008372) #27	brdt (ENSCSEG00000008394)	tgfbr3 (ENSCSEG00000008418) #29	barhl2 (ENSCSEG00000008457) #33	ENSCSEG00000008463	kyat3.2 (ENSCSEG00000008479)	ENSCSEG00000008563	zgc:103559 (ENSCSEG00000008594)	agxta (ENSCSEG00000008618)	dtymk (ENSCSEG00000008633)	atg4b (ENSCSEG00000008648)	boka (ENSCSEG00000008678)	FARP2 (ENSCSEG00000008704)
Elephant shark	MODERN SPECIES	1492	arhgap29b (ENSCMIG00000006177) #8	abca4a (ENSCMIG00000006637) #9	ENSCMIG00000007512	gclm (ENSCMIG00000007539) #10	ENSCMIG00000007545 #11	bcar3 (ENSCMIG00000007556) #12	fnbp1l (ENSCMIG00000007582) #13	dr1 (ENSCMIG00000007589) #15	zgc:109982 (ENSCMIG00000007593)	scinla (ENSCMIG00000007638)	CCDC18 (ENSCMIG00000007754) #16	mtf2 (ENSCMIG00000007771) #18	dipk1aa (ENSCMIG00000007787) #19	ENSCMIG00000007794 #20	EVI5 (ENSCMIG00000007802) #21	gfi1ab (ENSCMIG00000007811) #22	RPAP2 (ENSCMIG00000007819) #23	glmna (ENSCMIG00000007825) #24	C1orf146 (ENSCMIG00000007839) #25	BTBD8 (ENSCMIG00000007843) #26	EPHX4 (ENSCMIG00000007850) #27	ENSCMIG00000007853	BRDT (ENSCMIG00000007858) #28	tgfbr3 (ENSCMIG00000007864) #29	cdc7 (ENSCMIG00000007878) #30	HFM1 (ENSCMIG00000007922) #31	ZNF644 (ENSCMIG00000007933) #32	barhl2 (ENSCMIG00000007936) #33	ENSCMIG00000007942	ENSCMIG00000007946	lrrc8db (ENSCMIG00000007947)
Gnathostomata	ANCESTRAL SPECIES	1477															ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22
Elephant shark	MODERN SPECIES	1735												ENSCMIG00000019393	ENSCMIG00000019392	ENSCMIG00000019391	EVI5L (ENSCMIG00000019376) ##21	ENSCMIG00000019366 ##22	ENSCMIG00000019365	ENSCMIG00000019359	ddx39aa (ENSCMIG00000019342)	pkn1b (ENSCMIG00000019323)	C19orf67 (ENSCMIG00000019317)	ENSCMIG00000019313	ENSCMIG00000019304	asf1ba (ENSCMIG00000019293)	ENSCMIG00000019292	ADGRL1 (ENSCMIG00000019290)
Euteleostomi	ANCESTRAL SPECIES	94	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000165798	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000159979	ENSGT00940000158718	ENSGT00950000183036.b	ENSGT00950000182997.a.b.b.a	ENSGT01100000263521.b	ENSGT01100000263556.a.a	ENSGT01020000230338	ENSGT00940000162906	ENSGT00390000000976
Actinopterygii	ANCESTRAL SPECIES	151	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000165798	ENSGT00940000154912	ENSGT00940000159311.d.a.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000154990
Neopterygii	ANCESTRAL SPECIES	122	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000165172	ENSGT00940000154912	ENSGT00940000159311.d.a.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000154990	ENSGT00390000009916	ENSGT01100000263820	ENSGT00950000183036.b	ENSGT00390000000976	ENSGT00940000158718	ENSGT00940000165433	ENSGT00530000063777.a.a.b	ENSGT00940000159979
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	916																ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000168682	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00970000193546
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000154277.b.b.b	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000158718.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00390000000976.d.b	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000180109	ENSGT00940000165438.a.a	ENSGT00940000164623.B
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000158718.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000158718.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Tiger tail seahorse	MODERN SPECIES	432									foxd7 (ENSHCOG00000019159)	hmgxb4a (ENSHCOG00000019194)	ankrd54 (ENSHCOG00000019202)	hmox1a (ENSHCOG00000019209)	foxred2 (ENSHCOG00000019279)	mcm5 (ENSHCOG00000019324)	ENSHCOG00000019328	ENSHCOG00000019332 ##22	pkn1b (ENSHCOG00000019370)	ENSHCOG00000019382	ENSHCOG00000019392	MCOLN1 (ENSHCOG00000019420)	trappc5 (ENSHCOG00000019427)	ENSHCOG00000000519	ptger1b (ENSHCOG00000019485)	ilf3b (ENSHCOG00000019528)	farsa (ENSHCOG00000019548)	ENSHCOG00000019563	gcdhb (ENSHCOG00000019597)	ENSHCOG00000019614	ENSHCOG00000000523	ENSHCOG00000019661	ENSHCOG00000019664
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000158718.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a
European seabass	MODERN SPECIES	21	ldlra (ENSDLAG00005025005)	smarca4a (ENSDLAG00005024921)	ENSDLAG00005024911	MAST1 (ENSDLAG00005024754)	rtbdn (ENSDLAG00005029809)	junbb (ENSDLAG00005024718)	hook2 (ENSDLAG00005024232)	trir (ENSDLAG00005030948)	ubn2b (ENSDLAG00005024137)	ENSDLAG00005033984	ENSDLAG00005022268	ENSDLAG00005022198	ENSDLAG00005022196	ENSDLAG00005022175	ENSDLAG00005022168	ENSDLAG00005022163 ##22	ENSDLAG00005029706 ##29	pkn1b (ENSDLAG00005018963)	ENSDLAG00005018854	ENSDLAG00005018028	ENSDLAG00005017994	pglyrp6 (ENSDLAG00005017983)	ENSDLAG00005017956	ptger1b (ENSDLAG00005017951)	ilf3b (ENSDLAG00005017728)	farsa (ENSDLAG00005017344)	gcdhb (ENSDLAG00005016831)	ENSDLAG00005016821	ENSDLAG00005014025	ENSDLAG00005013955	ENSDLAG00005034601
Large yellow croaker	MODERN SPECIES	483	ATG4D (ENSLCRG00005010693)	MAST1 (ENSLCRG00005010704)	rtbdn (ENSLCRG00005012410)	junbb (ENSLCRG00005012411)	hook2 (ENSLCRG00005012442)	rpsa (ENSLCRG00005014977)	trir (ENSLCRG00005014979)	ubn2b (ENSLCRG00005014980)	slc25a38a (ENSLCRG00005014981)	MYH9 (ENSLCRG00005015007)	txn2 (ENSLCRG00005015609)	ENSLCRG00005015610	ENSLCRG00005015611	DDX39A (ENSLCRG00005015615)	ENSLCRG00005015638	ENSLCRG00005015640 ##22	ENSLCRG00005002709 ##29	pkn1b (ENSLCRG00005002886)	ENSLCRG00005008673	ENSLCRG00005008674	ENSLCRG00005008676	CACNG2 (ENSLCRG00005008677)	ENSLCRG00005008678	rpl3 (ENSLCRG00005008679)	ENSLCRG00005008704	slc25a39 (ENSLCRG00005008708)	grna (ENSLCRG00005008721)	RUNDC1 (ENSLCRG00005008724)	rpl27 (ENSLCRG00005008726)	ENSLCRG00005008728	bcat2 (ENSLCRG00005008738)
Gilthead seabream	MODERN SPECIES	15	smarca4a (ENSSAUG00010025438)	ATG4D (ENSSAUG00010025435)	MAST1 (ENSSAUG00010025250)	rtbdn (ENSSAUG00010025236)	junbb (ENSSAUG00010025234)	hook2 (ENSSAUG00010025205)	trir (ENSSAUG00010025196)	ubn2b (ENSSAUG00010025195)	rpsa (ENSSAUG00010025190)	slc25a38a (ENSSAUG00010025186)	MYH9 (ENSSAUG00010024631)	txn2 (ENSSAUG00010024601)	ENSSAUG00010024600	DDX39A (ENSSAUG00010024594)	ENSSAUG00010024592	ENSSAUG00010024591 ##22	ENSSAUG00010024589 ##29	pkn1b (ENSSAUG00010023829)	ENSSAUG00010023811	MCOLN1 (ENSSAUG00010023796)	trappc5 (ENSSAUG00010023794)	pglyrp6 (ENSSAUG00010023793)	ENSSAUG00010023791	ptger1b (ENSSAUG00010023790)	ilf3b (ENSSAUG00010023710)	farsa (ENSSAUG00010023664)	gcdhb (ENSSAUG00010023523)	ENSSAUG00010023518	SLC44A2 (ENSSAUG00010023071)	ENSSAUG00010023060	ENSSAUG00010023059
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00970000193546
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00970000193546	ENSGT00940000165438.a.a
Channel bull blenny	MODERN SPECIES	22	smarca4a (ENSCGOG00000012016)	ATG4D (ENSCGOG00000016428)	MAST1 (ENSCGOG00000016453)	rtbdn (ENSCGOG00000017728)	junbb (ENSCGOG00000017729)	hook2 (ENSCGOG00000017755)	ubn2b (ENSCGOG00000018563)	trir (ENSCGOG00000018567)	rpsa (ENSCGOG00000018572)	slc25a38a (ENSCGOG00000018575)	MYH9 (ENSCGOG00000018703)	txn2 (ENSCGOG00000023533)	ENSCGOG00000023535	DDX39A (ENSCGOG00000023561)	ENSCGOG00000023737	ENSCGOG00000023738 ##22	ENSCGOG00000023739 ##29	pkn1b (ENSCGOG00000023819)	ENSCGOG00000024170	MCOLN1 (ENSCGOG00000003887)	trappc5 (ENSCGOG00000004152)	ENSCGOG00000004179	ptger1b (ENSCGOG00000004215)	ilf3b (ENSCGOG00000004269)	farsa (ENSCGOG00000005691)	gcdhb (ENSCGOG00000005757)	SLC44A2 (ENSCGOG00000005772)	ENSCGOG00000006104	ENSCGOG00000006108	ENSCGOG00000006109	nfil3-6 (ENSCGOG00000006111)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000180109
Climbing perch	MODERN SPECIES	21	smarca4a (ENSATEG00000011524)	ENSATEG00000011639	MAST1 (ENSATEG00000011656)	ENSATEG00000028219	junbb (ENSATEG00000026800)	hook2 (ENSATEG00000011779)	trir (ENSATEG00000011822)	ubn2b (ENSATEG00000011798)	ENSATEG00000011829	ENSATEG00000011864	ENSATEG00000011896	ENSATEG00000026238	ENSATEG00000012040	ENSATEG00000027489	ENSATEG00000012098	ENSATEG00000012271 ##22	ENSATEG00000012283 ##29	pkn1b (ENSATEG00000012314)	ENSATEG00000029121	ENSATEG00000012403	ENSATEG00000012430	pglyrp6 (ENSATEG00000012499)	ENSATEG00000012515	ENSATEG00000012527	ptger1b (ENSATEG00000012538)	ilf3b (ENSATEG00000012555)	farsa (ENSATEG00000012633)	ilf3b (ENSATEG00000012690)	ENSATEG00000012807	gcdhb (ENSATEG00000012875)	ENSATEG00000012933
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Turbot	MODERN SPECIES	10	kri1 (ENSSMAG00000003342)	ldlra (ENSSMAG00000003321)	smarca4a (ENSSMAG00000003200)	ENSSMAG00000003181	ENSSMAG00000003147	rtbdn (ENSSMAG00000003131)	ENSSMAG00000003103	ENSSMAG00000003094	ENSSMAG00000023842	ENSSMAG00000002993	ENSSMAG00000002885	txn2 (ENSSMAG00000002868)	ENSSMAG00000002861	ENSSMAG00000002831	ENSSMAG00000002816	ENSSMAG00000002798 ##22	ENSSMAG00000002778 ##29	pkn1b (ENSSMAG00000002589)	ENSSMAG00000002575	ENSSMAG00000002559	ENSSMAG00000002524	ENSSMAG00000031563	pglyrp6 (ENSSMAG00000002509)	ENSSMAG00000002483	ptger1b (ENSSMAG00000002469)	ilf3b (ENSSMAG00000002392)	farsa (ENSSMAG00000002358)	gcdhb (ENSSMAG00000002305)	ENSSMAG00000002296	ENSSMAG00000002118	ENSSMAG00000002091
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a	ENSGT00940000164623.B
Barramundi perch	MODERN SPECIES	138	ENSLCAG00010020430	ATG4D (ENSLCAG00010020427)	MAST1 (ENSLCAG00010020419)	rtbdn (ENSLCAG00010020407)	junbb (ENSLCAG00010020403)	hook2 (ENSLCAG00010020100)	trir (ENSLCAG00010019994)	ubn2b (ENSLCAG00010019976)	rpsa (ENSLCAG00010019953)	slc25a38a (ENSLCAG00010019948)	MYH9 (ENSLCAG00010017682)	txn2 (ENSLCAG00010017386)	ENSLCAG00010017382	DDX39A (ENSLCAG00010017350)	ENSLCAG00010017334	ENSLCAG00010017331 ##22	pkn1b (ENSLCAG00010016723)	ENSLCAG00010016553	MCOLN1 (ENSLCAG00010016537)	trappc5 (ENSLCAG00010016517)	pglyrp6 (ENSLCAG00010016510)	ENSLCAG00010016508	ENSLCAG00010016504	ptger1b (ENSLCAG00010016503)	ilf3b (ENSLCAG00010016496)	farsa (ENSLCAG00010016459)	gcdhb (ENSLCAG00010016429)	SLC44A2 (ENSLCAG00010016387)	ENSLCAG00010016370	ENSLCAG00010016366	nfil3-6 (ENSLCAG00010016364)
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000175473	ENSGT00950000182696.A.a.a.b	ENSGT01050000244814.a.a.a.b	ENSGT00940000157896	ENSGT00940000155964.g	ENSGT00390000012258	ENSGT00940000163377.a.a	ENSGT00530000063718.a.b	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a	ENSGT00940000164623.B
Yellowtail amberjack	MODERN SPECIES	2955	ENSSLDG00000018034	emp1 (ENSSLDG00000018019)	GSG1 (ENSSLDG00000017976)	ENSSLDG00000017930	GRIN2B (ENSSLDG00000017898)	FMC1 (ENSSLDG00000017877)	ENSSLDG00000017865	wbp2nl (ENSSLDG00000017855)	rpsa (ENSSLDG00000017797)	slc25a38a (ENSSLDG00000017773)	MYH9 (ENSSLDG00000017702)	txn2 (ENSSLDG00000017678)	ENSSLDG00000017668	DDX39A (ENSSLDG00000017643)	ENSSLDG00000017629	ENSSLDG00000017614 ##22	pkn1b (ENSSLDG00000017422)	ENSSLDG00000017373	MCOLN1 (ENSSLDG00000017349)	ENSSLDG00000017246	ptger1b (ENSSLDG00000017216)	ilf3b (ENSSLDG00000017171)	farsa (ENSSLDG00000017108)	ENSSLDG00000017086	gcdhb (ENSSLDG00000017043)	ENSSLDG00000017016	SLC44A2 (ENSSLDG00000016874)	ENSSLDG00000016810	ENSSLDG00000016798	nfil3-6 (ENSSLDG00000016791)	plppr2a (ENSSLDG00000016778)
Greater amberjack	MODERN SPECIES	50	ENSSDUG00000009442	EMP1 (ENSSDUG00000009432)	GSG1 (ENSSDUG00000009388)	ENSSDUG00000009331	GRIN2B (ENSSDUG00000009297)	FMC1 (ENSSDUG00000009286)	ENSSDUG00000009280	wbp2nl (ENSSDUG00000009267)	rpsa (ENSSDUG00000009226)	slc25a38a (ENSSDUG00000009203)	MYH9 (ENSSDUG00000009131)	txn2 (ENSSDUG00000009105)	ENSSDUG00000009092	DDX39A (ENSSDUG00000009075)	ENSSDUG00000009068	ENSSDUG00000009062 ##22	pkn1b (ENSSDUG00000008941)	ENSSDUG00000008915	MCOLN1 (ENSSDUG00000008892)	trappc5 (ENSSDUG00000008885)	pglyrp6 (ENSSDUG00000008874)	ENSSDUG00000008791	ptger1b (ENSSDUG00000008765)	ilf3b (ENSSDUG00000008684)	farsa (ENSSDUG00000008631)	ENSSDUG00000008616	gcdhb (ENSSDUG00000008590)	ENSSDUG00000008572	SLC44A2 (ENSSDUG00000008512)	ENSSDUG00000008491	ENSSDUG00000008485
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000158718.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a
Atherinomorphae	ANCESTRAL SPECIES	25	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a
Mangrove rivulus	MODERN SPECIES	37	ENSKMAG00000011834	rtbdn (ENSKMAG00000011820)	junbb (ENSKMAG00000011813)	hook2 (ENSKMAG00000011755)	ENSKMAG00000011717	trir (ENSKMAG00000011701)	ubn2b (ENSKMAG00000011657)	rpsa (ENSKMAG00000011591)	slc25a38a (ENSKMAG00000011567)	MYH9 (ENSKMAG00000011387)	txn2 (ENSKMAG00000011298)	ENSKMAG00000011264	DDX39A (ENSKMAG00000011231)	ENSKMAG00000011205	ENSKMAG00000011189	ENSKMAG00000011177 ##22	pkn1b (ENSKMAG00000011042)	ENSKMAG00000010974	MCOLN1 (ENSKMAG00000010915)	trappc5 (ENSKMAG00000010904)	pglyrp6 (ENSKMAG00000010898)	ENSKMAG00000010836	ptger1b (ENSKMAG00000010814)	ilf3b (ENSKMAG00000010770)	ENSKMAG00000010736	farsa (ENSKMAG00000010698)	gcdhb (ENSKMAG00000010653)	SLC44A2 (ENSKMAG00000010448)	ENSKMAG00000010404	ENSKMAG00000010397	ENSKMAG00000010380
Turquoise killifish	MODERN SPECIES	1612	ATG4D (ENSNFUG00015017721)	MAST1 (ENSNFUG00015000406)	ENSNFUG00015000831	rtbdn (ENSNFUG00015000833)	hook2 (ENSNFUG00015000942)	C3H19ORF43 (ENSNFUG00015001354)	UBN2 (ENSNFUG00015001361)	RPSA (ENSNFUG00015001374)	slc25a38a (ENSNFUG00015001388)	MYH9 (ENSNFUG00015001458)	ENSNFUG00015001716	TXN2 (ENSNFUG00015001719)	ENSNFUG00015001721	DDX39A (ENSNFUG00015001735)	Nfu_g_1_019756 (ENSNFUG00015001794)	ENSNFUG00015001798 ##22	ENG (ENSNFUG00015001805) ##29	ENSNFUG00015002027	ENSNFUG00015002031	DLX3 (ENSNFUG00015002037)	PSMD11 (ENSNFUG00015002058)	RPAIN (ENSNFUG00015002100)	CDK5R1 (ENSNFUG00015002104)	NSFA (ENSNFUG00015002129)	thraa (ENSNFUG00015002280)	dusp3b (ENSNFUG00015002412)	ENSNFUG00015002413	tnnt1 (ENSNFUG00015002416)	syt5a (ENSNFUG00015002424)	ENSNFUG00015002428	FTL (ENSNFUG00015002448)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Poecilia	ANCESTRAL SPECIES	18	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT01040000241154	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a
NAME_6	ANCESTRAL SPECIES	40	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT01040000241154	ENSGT00940000178069	ENSGT00940000177829	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a
Amazon molly	MODERN SPECIES	657			hook2 (ENSPFOG00000006685)	trir (ENSPFOG00000009169)	ubn2b (ENSPFOG00000006906)	rpsa (ENSPFOG00000007174)	ENSPFOG00000007362	MYH9 (ENSPFOG00000007460)	rpsa (ENSPFOG00000009259)	slc25a38a (ENSPFOG00000009393)	MYH9 (ENSPFOG00000009437)	txn2 (ENSPFOG00000009985)	ENSPFOG00000010021	DDX39A (ENSPFOG00000010070)	ENSPFOG00000010148	ENSPFOG00000023051 ##22	ENSPFOG00000010214 ##29	pkn1b (ENSPFOG00000010299)	ENSPFOG00000023683	ENSPFOG00000023856	MCOLN1 (ENSPFOG00000010733)	trappc5 (ENSPFOG00000010827)	pglyrp6 (ENSPFOG00000010849)	ENSPFOG00000010876	ENSPFOG00000010922
Guppy	MODERN SPECIES	460	MAST1 (ENSPREG00000014461)	junbb (ENSPREG00000014425)	rtbdn (ENSPREG00000014383)	hook2 (ENSPREG00000014349)	trir (ENSPREG00000014314)	ubn2b (ENSPREG00000014253)	ENSPREG00000014229	rpsa (ENSPREG00000014208)	slc25a38a (ENSPREG00000014185)	MYH9 (ENSPREG00000014041)	txn2 (ENSPREG00000014016)	ENSPREG00000014003	DDX39A (ENSPREG00000013989)	ENSPREG00000013976	ENSPREG00000013967	ENSPREG00000013960 ##22	pkn1b (ENSPREG00000013849)	ENSPREG00000013823	MCOLN1 (ENSPREG00000013745)	trappc5 (ENSPREG00000013712)	pglyrp6 (ENSPREG00000013700)	ptger1b (ENSPREG00000013692)	ilf3b (ENSPREG00000013654)	farsa (ENSPREG00000013620)	ENSPREG00000013609	gcdhb (ENSPREG00000013583)	SLC44A2 (ENSPREG00000013516)	ENSPREG00000013462	ENSPREG00000013445	nfil3-6 (ENSPREG00000013403)	ENSPREG00000013397
Platyfish	MODERN SPECIES	7	ldlra (ENSXMAG00000006284)	smarca4a (ENSXMAG00000006321)	ATG4D (ENSXMAG00000009160)	MAST1 (ENSXMAG00000009142)	rtbdn (ENSXMAG00000021867)	hook2 (ENSXMAG00000009113)	trir (ENSXMAG00000009111)	ubn2b (ENSXMAG00000009106)	rpsa (ENSXMAG00000009095)	slc25a38a (ENSXMAG00000009093)	MYH9 (ENSXMAG00000008955)	txn2 (ENSXMAG00000021471)	ENSXMAG00000008657	DDX39A (ENSXMAG00000008939)	ENSXMAG00000021166	ENSXMAG00000028641 ##22	ENSXMAG00000008924 ##29	pkn1b (ENSXMAG00000008895)	ENSXMAG00000025108	ENSXMAG00000022190	ENSXMAG00000025001	MCOLN1 (ENSXMAG00000027537)	trappc5 (ENSXMAG00000021372)	pglyrp6 (ENSXMAG00000008873)	ENSXMAG00000008866	ptger1b (ENSXMAG00000008865)	ilf3b (ENSXMAG00000008854)	farsa (ENSXMAG00000008832)	gcdhb (ENSXMAG00000011601)	SLC44A2 (ENSXMAG00000011550)	ENSXMAG00000011502
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000156166.b.a.a ##22
Sheepshead minnow	MODERN SPECIES	302	ATG4D (ENSCVAG00000006993)	MAST1 (ENSCVAG00000000193)	ENSCVAG00000007061	rtbdn (ENSCVAG00000000197)	junbb (ENSCVAG00000007096)	hook2 (ENSCVAG00000000198)	trir (ENSCVAG00000007128)	ubn2b (ENSCVAG00000007272)	rpsa (ENSCVAG00000007308)	slc25a38a (ENSCVAG00000007346)	MYH9 (ENSCVAG00000007422)	txn2 (ENSCVAG00000007438)	ENSCVAG00000007450	DDX39A (ENSCVAG00000007477)	ENSCVAG00000007489	ENSCVAG00000007494 ##22	ENSCVAG00000007502	ENSCVAG00000007507	ENSCVAG00000007521	pkn1b (ENSCVAG00000007594)	ENSCVAG00000007606	MCOLN1 (ENSCVAG00000007615)	trappc5 (ENSCVAG00000007622)	ENSCVAG00000007637	ENSCVAG00000007641	pglyrp6 (ENSCVAG00000007682)	ENSCVAG00000007770	ptger1b (ENSCVAG00000007784)	ilf3b (ENSCVAG00000007840)	farsa (ENSCVAG00000007907)	gcdhb (ENSCVAG00000007923)
Oryzias	ANCESTRAL SPECIES		ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Oryzias_b	ANCESTRAL SPECIES	42	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000177182.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT01090000262442	ENSGT00940000158178.b.a
Indian medaka	MODERN SPECIES	9	si:dkeyp-69e1.8 (ENSOMEG00000009192)	foxd7 (ENSOMEG00000009211)	MAST1 (ENSOMEG00000009249)	rtbdn (ENSOMEG00000009277)	junbb (ENSOMEG00000009286)	hook2 (ENSOMEG00000009418)	trir (ENSOMEG00000009480)	ubn2b (ENSOMEG00000009511)	rpsa (ENSOMEG00000009576)	slc25a38a (ENSOMEG00000009614)	MYH9 (ENSOMEG00000009713)	txn2 (ENSOMEG00000009745)	ENSOMEG00000009760	DDX39A (ENSOMEG00000009789)	ENSOMEG00000009801	ENSOMEG00000009823 ##22	pkn1b (ENSOMEG00000009934)	ENSOMEG00000009972	ENSOMEG00000009981	MCOLN1 (ENSOMEG00000010012)	trappc5 (ENSOMEG00000010037)	pglyrp6 (ENSOMEG00000010062)	ENSOMEG00000010110	ENSOMEG00000010125	plppr2a (ENSOMEG00000010172)	tlcd4b (ENSOMEG00000010228)	CNN1 (ENSOMEG00000010268)	tmem205 (ENSOMEG00000010284)	rab3db (ENSOMEG00000000244)	ELOF1 (ENSOMEG00000010340)	epor (ENSOMEG00000010366)
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000002621	GADD45GIP1 (ENSOJAG00000002181)	ENSOJAG00000002150	ENSOJAG00000002140	MAST1 (ENSOJAG00000001680)	rtbdn (ENSOJAG00000001580)	junbb (ENSOJAG00000001566)	trir (ENSOJAG00000001541)	ubn2b (ENSOJAG00000001517)	RPSA (ENSOJAG00000001492)	slc25a38a (ENSOJAG00000001481)	txn2 (ENSOJAG00000000925)	ENSOJAG00000000920	DDX39A (ENSOJAG00000000913)	ENSOJAG00000000903	ENSOJAG00000000899 ##22	ENSOJAG00000000893 ##29	pkn1b (ENSOJAG00000000819)	ENSOJAG00000000770	MCOLN1 (ENSOJAG00000000741)	trappc5 (ENSOJAG00000000680)	pglyrp6 (ENSOJAG00000000670)	pglyrp6 (ENSOJAG00000000664)	trappc5 (ENSOJAG00000000654)	ENSOJAG00000000627	ptger1b (ENSOJAG00000000613)	ilf3b (ENSOJAG00000000579)	farsa (ENSOJAG00000000549)	gcdhb (ENSOJAG00000000419)	ENSOJAG00000000353	SLC44A2 (ENSOJAG00000000314)
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00940000154912.u.b	ENSGT00940000165172.a	ENSGT00530000064086	ENSGT00940000155632.o	ENSGT00550000075117.m.b	ENSGT00950000183099	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182.b	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000015500	MAST1 (ENSORLG00000015521)	rtbdn (ENSORLG00000015528)	ENSORLG00000024867	junbb (ENSORLG00000021995)	hook2 (ENSORLG00000015585)	DDX39A (ENSORLG00000010565)	ENSORLG00000026553	txn2 (ENSORLG00000015600)	MYH9 (ENSORLG00000016200)	slc25a38a (ENSORLG00000016238)	rpsa (ENSORLG00000016251)	ubn2b (ENSORLG00000016256)	trir (ENSORLG00000016259)	ENSORLG00000016274	ENSORLG00000026263 ##22	ENSORLG00000016288 ##29	pkn1b (ENSORLG00000016312)	ENSORLG00000022678	ENSORLG00000030221	ENSORLG00000016346	trappc5 (ENSORLG00000025442)	pglyrp6 (ENSORLG00000016356)	ENSORLG00000023912	ptger1b (ENSORLG00000016366)	ENSORLG00000022416	ilf3b (ENSORLG00000016379)	farsa (ENSORLG00000016406)	ENSORLG00000016414	gcdhb (ENSORLG00000016423)	ENSORLG00000016438
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Nile tilapia	MODERN SPECIES	16	smarca4a (ENSONIG00000008196)	ATG4D (ENSONIG00000043096)	MAST1 (ENSONIG00000008189)	rtbdn (ENSONIG00000008184)	junbb (ENSONIG00000021072)	hook2 (ENSONIG00000008175)	trir (ENSONIG00000038123)	ubn2b (ENSONIG00000008172)	rpsa (ENSONIG00000008163)	slc25a38a (ENSONIG00000008160)	MYH9 (ENSONIG00000008128)	txn2 (ENSONIG00000008126)	ENSONIG00000008125	DDX39A (ENSONIG00000036607)	ENSONIG00000028312	ENSONIG00000008115 ##22	ENSONIG00000008110 ##29	pkn1b (ENSONIG00000008107)	ENSONIG00000031168	ENSONIG00000040059	ENSONIG00000029638	MCOLN1 (ENSONIG00000008098)	ENSONIG00000036245	trappc5 (ENSONIG00000018194)	pglyrp6 (ENSONIG00000008092)	ENSONIG00000034208	ptger1b (ENSONIG00000008088)	ilf3b (ENSONIG00000008081)	farsa (ENSONIG00000008075)	gcdhb (ENSONIG00000008070)	SLC44A2 (ENSONIG00000008064)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00970000193546
Lyretail cichlid	MODERN SPECIES	423	ldlra (ENSNBRG00000011554)	smarca4a (ENSNBRG00000011457)	ATG4D (ENSNBRG00000011391)	MAST1 (ENSNBRG00000011320)	rtbdn (ENSNBRG00000011306)	junbb (ENSNBRG00000011282)	hook2 (ENSNBRG00000010993)	trir (ENSNBRG00000010941)	ubn2b (ENSNBRG00000010895)	rpsa (ENSNBRG00000010854)	slc25a38a (ENSNBRG00000010824)	MYH9 (ENSNBRG00000010730)	ENSNBRG00000010711	DDX39A (ENSNBRG00000010679)	ENSNBRG00000010417	ENSNBRG00000010351 ##22	ENSNBRG00000010335	pkn1b (ENSNBRG00000010293)	ENSNBRG00000010276	ENSNBRG00000010264	MCOLN1 (ENSNBRG00000010214)	trappc5 (ENSNBRG00000010206)	pglyrp6 (ENSNBRG00000010178)	ENSNBRG00000010147	ptger1b (ENSNBRG00000010138)	ENSNBRG00000010130	ilf3b (ENSNBRG00000010095)	farsa (ENSNBRG00000010063)	ENSNBRG00000010052	gcdhb (ENSNBRG00000010016)	ENSNBRG00000009993
Haplochromini	ANCESTRAL SPECIES	32	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Burton s mouthbrooder	MODERN SPECIES	350	ATG4D (ENSHBUG00000020894)	MAST1 (ENSHBUG00000020881)	ENSHBUG00000020862	rtbdn (ENSHBUG00000020722)	junbb (ENSHBUG00000020693)	hook2 (ENSHBUG00000020665)	ubn2b (ENSHBUG00000020646)	trir (ENSHBUG00000000633)	rpsa (ENSHBUG00000020630)	slc25a38a (ENSHBUG00000020594)	MYH9 (ENSHBUG00000020558)	txn2 (ENSHBUG00000020290)	ENSHBUG00000020272	DDX39A (ENSHBUG00000020257)	ENSHBUG00000000615	ENSHBUG00000020215 ##22	ENSHBUG00000020204 ##29	pkn1b (ENSHBUG00000000612)	ENSHBUG00000020107	MCOLN1 (ENSHBUG00000000595)	trappc5 (ENSHBUG00000020014)	pglyrp6 (ENSHBUG00000020005)	ENSHBUG00000019985	ptger1b (ENSHBUG00000019953)	ilf3b (ENSHBUG00000019941)	farsa (ENSHBUG00000019852)	ENSHBUG00000019830	gcdhb (ENSHBUG00000019814)	SLC44A2 (ENSHBUG00000019748)	ENSHBUG00000019689	ENSHBUG00000019673
Haplochromini_A	ANCESTRAL SPECIES	34	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
P. nyererei	MODERN SPECIES	376	ATG4D (ENSPNYG00000000837)	MAST1 (ENSPNYG00000000851)	ENSPNYG00000000905	rtbdn (ENSPNYG00000000986)	junbb (ENSPNYG00000001015)	hook2 (ENSPNYG00000001067)	trir (ENSPNYG00000001295)	ubn2b (ENSPNYG00000001273)	rpsa (ENSPNYG00000001305)	slc25a38a (ENSPNYG00000001346)	MYH9 (ENSPNYG00000001361)	txn2 (ENSPNYG00000001465)	ENSPNYG00000001485	DDX39A (ENSPNYG00000001498)	ENSPNYG00000001563	ENSPNYG00000001775 ##22	pkn1b (ENSPNYG00000001809)	ENSPNYG00000001849	MCOLN1 (ENSPNYG00000001876)	trappc5 (ENSPNYG00000001976)	pglyrp6 (ENSPNYG00000001979)	ENSPNYG00000001991	ptger1b (ENSPNYG00000002025)	ilf3b (ENSPNYG00000002063)	farsa (ENSPNYG00000002144)	ENSPNYG00000002196	gcdhb (ENSPNYG00000002212)	SLC44A2 (ENSPNYG00000002284)	ENSPNYG00000002318	ENSPNYG00000002330	nfil3-6 (ENSPNYG00000002345)
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000177182	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00970000193546
Eastern happy	MODERN SPECIES	16	MAST1 (ENSACLG00000000372)	ENSACLG00000000427	rtbdn (ENSACLG00000000460)	junbb (ENSACLG00000000469)	ENSACLG00000000499	hook2 (ENSACLG00000000514)	trir (ENSACLG00000000917)	ubn2b (ENSACLG00000000931)	rpsa (ENSACLG00000000951)	slc25a38a (ENSACLG00000000983)	MYH9 (ENSACLG00000001015)	txn2 (ENSACLG00000001180)	ENSACLG00000001199	DDX39A (ENSACLG00000001214)	ENSACLG00000001247	ENSACLG00000001258 ##22	ENSACLG00000001293 ##29	pkn1b (ENSACLG00000001314)	ENSACLG00000001461	ENSACLG00000001468	MCOLN1 (ENSACLG00000001498)	trappc5 (ENSACLG00000001516)	ENSACLG00000001520	pglyrp6 (ENSACLG00000001527)	ENSACLG00000001576	ptger1b (ENSACLG00000001598)	ilf3b (ENSACLG00000001608)	farsa (ENSACLG00000001716)	ENSACLG00000001749	gcdhb (ENSACLG00000001766)	SLC44A2 (ENSACLG00000001785)
Zebra mbuna	MODERN SPECIES	1107	ATG4D (ENSMZEG00005003809)	MAST1 (ENSMZEG00005003727)	ENSMZEG00005003701	rtbdn (ENSMZEG00005003679)	junbb (ENSMZEG00005003658)	hook2 (ENSMZEG00005003284)	trir (ENSMZEG00005003258)	ubn2b (ENSMZEG00005003197)	rpsa (ENSMZEG00005003155)	slc25a38a (ENSMZEG00005003047)	MYH9 (ENSMZEG00005002935)	txn2 (ENSMZEG00005002916)	ENSMZEG00005002911	DDX39A (ENSMZEG00005002864)	ENSMZEG00005002654	ENSMZEG00005002629 ##22	ENSMZEG00005002600 ##29	pkn1b (ENSMZEG00005002537)	ENSMZEG00005002505	ENSMZEG00005002492	MCOLN1 (ENSMZEG00005002476)	trappc5 (ENSMZEG00005002457)	pglyrp6 (ENSMZEG00005002449)	ENSMZEG00005002436	ptger1b (ENSMZEG00005002425)	ilf3b (ENSMZEG00005002368)	farsa (ENSMZEG00005002319)	ENSMZEG00005002303	gcdhb (ENSMZEG00005002278)	SLC44A2 (ENSMZEG00005002218)	ENSMZEG00005002202
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000178069	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00940000156887.a.c	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000178069	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a
Amphiprion	ANCESTRAL SPECIES	25	ENSGT00940000156887.a.c	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00950000183099	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000178069	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00940000177182	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000015638	ATG4D (ENSAPEG00000015658)	MAST1 (ENSAPEG00000015668)	rtbdn (ENSAPEG00000015759)	ENSAPEG00000015779	hook2 (ENSAPEG00000015844)	trir (ENSAPEG00000016221)	ubn2b (ENSAPEG00000016235)	rpsa (ENSAPEG00000016294)	slc25a38a (ENSAPEG00000016352)	MYH9 (ENSAPEG00000016375)	txn2 (ENSAPEG00000016586)	ENSAPEG00000016651	DDX39A (ENSAPEG00000017193)	ENSAPEG00000017262	ENSAPEG00000017435 ##22	pkn1b (ENSAPEG00000017466)	ENSAPEG00000017539	ENSAPEG00000017556	MCOLN1 (ENSAPEG00000017568)	trappc5 (ENSAPEG00000017609)	pglyrp6 (ENSAPEG00000017614)	ENSAPEG00000017624	ptger1b (ENSAPEG00000017651)	ilf3b (ENSAPEG00000017659)	farsa (ENSAPEG00000017695)	gcdhb (ENSAPEG00000017714)	SLC44A2 (ENSAPEG00000017761)	ENSAPEG00000017819	ENSAPEG00000017833	nfil3-6 (ENSAPEG00000017840)
Bicolor damselfish	MODERN SPECIES	1859															ENSSPAG00000009019	ENSSPAG00000008999 ##22	PKN1 (ENSSPAG00000008903)	ENSSPAG00000008886	ENSSPAG00000008866
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005019264	rtbdn (ENSMMDG00005019269)	junbb (ENSMMDG00005019271)	hook2 (ENSMMDG00005019286)	trir (ENSMMDG00005019306)	ubn2b (ENSMMDG00005019309)	TTC26 (ENSMMDG00005019320)	rpsa (ENSMMDG00005019334)	slc25a38a (ENSMMDG00005019340)	MYH9 (ENSMMDG00005019553)	txn2 (ENSMMDG00005021474)	ENSMMDG00005021478	DDX39A (ENSMMDG00005021494)	ENSMMDG00005021527	ENSMMDG00005021529	ENSMMDG00005021533 ##22	pkn1b (ENSMMDG00005021575)	ENSMMDG00005021668	MCOLN1 (ENSMMDG00005021680)	trappc5 (ENSMMDG00005021714)	pglyrp6 (ENSMMDG00005021732)	ENSMMDG00005021941	ptger1b (ENSMMDG00005021953)	ilf3b (ENSMMDG00005021973)	farsa (ENSMMDG00005021992)	syce2 (ENSMMDG00005021999)	gcdhb (ENSMMDG00005022091)	SLC44A2 (ENSMMDG00005022639)	ENSMMDG00005022684	ENSMMDG00005022686	ENSMMDG00005022691
Protacanthopterygii	ANCESTRAL SPECIES	5									ENSGT00950000183099.a	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b	ENSGT00940000158718.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a	ENSGT00970000193546	ENSGT00940000165438.a.a
Salmoninae	ANCESTRAL SPECIES		ENSGT00950000183099.a.a.a	ENSGT00950000183099.a.b	ENSGT00550000075117.m.b.c	ENSGT00530000064086.`b	ENSGT00390000000159.i.a	ENSGT00950000183099.a.a.b	ENSGT00550000075117.m.b.d	ENSGT00940000155632.o	ENSGT00530000064086.ab	ENSGT00940000165172.a.f	ENSGT00940000154912.u.a.d	ENSGT00940000159311.d.a.a.i.b	ENSGT00940000165172.a.e	ENSGT00940000154912.u.a.c	ENSGT00940000159311.d.a.a.i.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b.a	ENSGT01100000263820	ENSGT00950000183036.b.f	ENSGT00390000000976.d.b.d	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a.a.a	ENSGT01030000234559.a.a.b.a.a.b.d	ENSGT00390000000976.d.b.c	ENSGT00940000159979.a.a.a.b	ENSGT01030000234559.a.a.b.a.a.b.c	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000168682.i.b	ENSGT00940000158116.a.b
Salmoninae_a	ANCESTRAL SPECIES	37	ENSGT00940000157700.d.a.b	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b.a	ENSGT00940000154277.b.b.b.a	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k.b	ENSGT00390000012267.e.b	ENSGT00940000155858.e.f	ENSGT00390000000159.i.b	ENSGT00950000183099.a.a.a	ENSGT00940000165172.a.e	ENSGT00940000154912.u.a.c	ENSGT00940000159311.d.a.a.i.a	ENSGT00940000160024.c.a.b	ENSGT00940000159311.d.a.a.i.b	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b.b	ENSGT01100000263820.b	ENSGT00950000183036.b.f.k	ENSGT00390000000976.d.b.d	ENSGT00940000158718.a.b.i	ENSGT00940000159979.a.a.a.a	ENSGT01030000234559.a.a.b.a.a.b.d	ENSGT00940000156719.ab	ENSGT00390000006387.o	ENSGT00390000000976.d.b.c	ENSGT00940000158718.a.b.j	ENSGT00940000159979.a.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a.a.b
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	65	ENSGT00940000160152.k.a	ENSGT00390000012267.f	ENSGT00940000160152.l	ENSGT00390000012267.e.a	ENSGT00940000155858.e.e	ENSGT00390000000159.i.a	ENSGT00950000183099.a.a.b	ENSGT00550000075117.m.b.d.c	ENSGT00940000155632.o.b	ENSGT00530000064086.`b	ENSGT00940000165172.a.f.a	ENSGT00940000154912.u.a.d	ENSGT00940000159311.d.a.a.i.a.c	ENSGT00940000160024.c.a.b	ENSGT00940000159311.d.a.a.i.b	ENSGT00940000156166.b.a.a.a ##22	ENSGT00530000063861.a.d ##29	ENSGT00940000154990.fb.b.a.a	ENSGT01100000263705	ENSGT00950000183036.b.f.j	ENSGT00390000000976.d.b.d	ENSGT00940000158718.a.b.j	ENSGT00940000159979.a.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a.a.b.b	ENSGT01030000234559.a.a.b.a.a.b.c	ENSGT00940000156719.`b	ENSGT00390000006387.p	ENSGT00940000168682.i.a	ENSGT00940000158116.a.b.b	ENSGT00970000193546.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	44	ENSGT00940000155828	ENSGT00940000161195.a.a.e	ENSGT00940000160152.k.a	ENSGT00390000012267.f	ENSGT00940000155858.e.e	ENSGT00390000000159.i.a	ENSGT00950000183099.a.a.b	ENSGT00550000075117.m.b.d.c	ENSGT00940000155632.o.b	ENSGT00530000064086.`b	ENSGT00940000165172.a.f.a	ENSGT00940000154912.u.a.d	ENSGT00940000159311.d.a.a.i.a.c	ENSGT00940000160024.c.a.b	ENSGT00940000159311.d.a.a.i.b	ENSGT00940000156166.b.a.a.a ##22	ENSGT00530000063861.a.d ##29	ENSGT00940000154990.fb.b.a.a	ENSGT01100000263705	ENSGT00950000183036.b.f.j	ENSGT00390000000976.d.b.d	ENSGT00940000158718.a.b.j	ENSGT00940000159979.a.a.b	ENSGT00940000159979.b	ENSGT00940000159979.a.a.a.b.b	ENSGT01030000234559.a.a.b.a.a.b.c	ENSGT00940000156719.`b	ENSGT00390000006387.p	ENSGT00940000168682.i.a	ENSGT00940000158116.a.b.b	ENSGT00970000193546.b.b
Coho salmon	MODERN SPECIES	1	MAST1 (ENSOKIG00005020950)	rtbdn (ENSOKIG00005020855)	PRDX2 (ENSOKIG00005020821)	junbb (ENSOKIG00005020817)	HOOK2 (ENSOKIG00005020304)	trir (ENSOKIG00005020242)	TTC26 (ENSOKIG00005019958)	ENSOKIG00005019727	slc25a38a (ENSOKIG00005019706)	MYH9 (ENSOKIG00005019571)	TXN2 (ENSOKIG00005019510)	ENSOKIG00005019502	DDX39A (ENSOKIG00005019436)	ENSOKIG00005019425	ENSOKIG00005019420	ENSOKIG00005019414 ##22	ENSOKIG00005019404 ##29	pkn1b (ENSOKIG00005014193)	ENSOKIG00005013930	MCOLN1 (ENSOKIG00005013891)	TRAPPC5 (ENSOKIG00005013866)	pglyrp6 (ENSOKIG00005013839)	ENSOKIG00005013782	ptger1b (ENSOKIG00005013767)	ilf3b (ENSOKIG00005013634)	farsa (ENSOKIG00005013512)	syce2 (ENSOKIG00005013476)	gcdhb (ENSOKIG00005013120)	ENSOKIG00005013087	SLC44A2 (ENSOKIG00005008741)	ENSOKIG00005008412
Chinook salmon	MODERN SPECIES	19	MAST1 (ENSOTSG00005013712)	rtbdn (ENSOTSG00005013711)	ENSOTSG00005013710	junbb (ENSOTSG00005013709)	ENSOTSG00005013708	HOOK2 (ENSOTSG00005013561)	trir (ENSOTSG00005013560)	ubn2b (ENSOTSG00005013552)	TTC26 (ENSOTSG00005012598)	rpsa (ENSOTSG00005012458)	slc25a38a (ENSOTSG00005012457)	txn2 (ENSOTSG00005012455)	ENSOTSG00005012454	DDX39A (ENSOTSG00005012443)	ENSOTSG00005012439	ENSOTSG00005012438 ##22	ENSOTSG00005012437	pkn1b (ENSOTSG00005012303)	ENSOTSG00005012281	MCOLN1 (ENSOTSG00005012240)	trappc5 (ENSOTSG00005012236)	pglyrp6 (ENSOTSG00005012233)	ENSOTSG00005012232	ENSOTSG00005012231	ptger1b (ENSOTSG00005012229)	ilf3b (ENSOTSG00005012178)	farsa (ENSOTSG00005012149)	syce2 (ENSOTSG00005012145)	gcdhb (ENSOTSG00005012066)	ENSOTSG00005012064	SLC44A2 (ENSOTSG00005003262)
Rainbow trout	MODERN SPECIES	4	rtbdn (ENSOMYG00000020840)	ENSOMYG00000020832	junbb (ENSOMYG00000020826)	ENSOMYG00000068385	HOOK2 (ENSOMYG00000020139)	trir (ENSOMYG00000020022)	ubn2b (ENSOMYG00000019996)	ENSOMYG00000019788	ENSOMYG00000019560	ENSOMYG00000019515	ENSOMYG00000019426	ENSOMYG00000019364	ENSOMYG00000019358	ENSOMYG00000019268	ENSOMYG00000019130	ENSOMYG00000058328 ##22	ENSOMYG00000019095 ##29	pkn1b (ENSOMYG00000008604)	ENSOMYG00000004271	ENSOMYG00000004216	tppc5 (ENSOMYG00000004176)	pglyrp6 (ENSOMYG00000004132)	ENSOMYG00000004115	ENSOMYG00000004075	ptger1b (ENSOMYG00000004014)	ilf3b (ENSOMYG00000003802)	farsa (ENSOMYG00000020044)	syce2 (ENSOMYG00000018740)	gcdhb (ENSOMYG00000016231)	ENSOMYG00000019659	ENSOMYG00000018857
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b.a.b	ENSGT00940000154277.b.b.b.a	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k.b	ENSGT00390000012267.e.b	ENSGT00940000155858.e.f	ENSGT00390000000159.i.b	ENSGT00950000183099.a.a.a	ENSGT00550000075117.m.b.d.d	ENSGT00940000155632.o.a	ENSGT00530000064086.ab	ENSGT00940000165172.a.f.b	ENSGT00940000154912.u.a.c	ENSGT00940000159311.d.a.a.i.a.d	ENSGT00940000156166.b.a.a.b ##22	ENSGT00530000063861.a.c ##29	ENSGT00940000154990.fb.b.b	ENSGT00940000154990.fb.b.a.b	ENSGT01100000263820.b	ENSGT00950000183036.b.f.k	ENSGT00390000000976.d.b.c	ENSGT00940000158718.a.b.i	ENSGT00940000159979.a.a.a.b.a	ENSGT01030000234559.a.a.b.a.a.b.d	ENSGT00940000156719.ab	ENSGT00390000006387.o	ENSGT00940000168682.i.b	ENSGT00940000158116.a.b.a	ENSGT00970000193546.a	ENSGT00940000158178.b.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	55	ENSGT00940000157700.d.a.b	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.a	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k.b	ENSGT00390000012267.e.b	ENSGT00940000155858.e.f	ENSGT00390000000159.i.b	ENSGT00950000183099.a.a.a	ENSGT00550000075117.m.b.d.d	ENSGT00940000155632.o.a	ENSGT00530000064086.ab	ENSGT00940000165172.a.f.b	ENSGT00940000154912.u.a.c	ENSGT00940000159311.d.a.a.i.a.d	ENSGT00940000156166.b.a.a.b ##22	ENSGT00530000063861.a.c ##29	ENSGT00940000154990.fb.b.b	ENSGT00940000154990.fb.b.a.b	ENSGT01100000263820.b	ENSGT00950000183036.b.f.k	ENSGT00390000000976.d.b.c	ENSGT00940000158718.a.b.i	ENSGT00940000159979.a.a.a.a	ENSGT00940000159979.a.a.a.b.a	ENSGT01030000234559.a.a.b.a.a.b.d	ENSGT00940000156719.ab	ENSGT00390000006387.o	ENSGT00940000168682.i.b	ENSGT00940000158116.a.b.a	ENSGT00970000193546.b.a
Chinook salmon	MODERN SPECIES	69												txn2 (ENSOTSG00005034342)	ENSOTSG00005034341	DDX39A (ENSOTSG00005034266)	ENSOTSG00005034258	ENSOTSG00005034256 ##22	ENSOTSG00005034252 ##29	ENSOTSG00005034249
Coho salmon	MODERN SPECIES	26	rtbdn (ENSOKIG00005015720)	ENSOKIG00005015705	junbb (ENSOKIG00005015699)	HOOK2 (ENSOKIG00005015416)	trir (ENSOKIG00005015385)	ubn2b (ENSOKIG00005015236)	TTC26 (ENSOKIG00005014788)	ENSOKIG00005014719	ENSOKIG00005014711	MYH9 (ENSOKIG00005011933)	ENSOKIG00005011644	ENSOKIG00005011630	DDX39A (ENSOKIG00005011257)	ENSOKIG00005011239	ENSOKIG00005011233	ENSOKIG00005011224 ##22	ENSOKIG00005011216 ##29	pkn1b (ENSOKIG00005009738)	ENSOKIG00005009644	MCOLN1 (ENSOKIG00005009567)	TRAPPC5 (ENSOKIG00005009541)	pglyrp6 (ENSOKIG00005009525)	ENSOKIG00005009448	ptger1b (ENSOKIG00005009429)	ilf3b (ENSOKIG00005009097)	farsa (ENSOKIG00005009023)	syce2 (ENSOKIG00005009002)	gcdhb (ENSOKIG00005008518)	ENSOKIG00005008471	SLC44A2 (ENSOKIG00005007861)	ENSOKIG00005007788
Rainbow trout	MODERN SPECIES	3	MAST1 (ENSOMYG00000024088)	rtbdn (ENSOMYG00000023506)	ENSOMYG00000069568	junbb (ENSOMYG00000023473)	HOOK2 (ENSOMYG00000022731)	trir (ENSOMYG00000022503)	ubn2b (ENSOMYG00000022462)	ENSOMYG00000022207	ENSOMYG00000031514	ENSOMYG00000022116	ENSOMYG00000021304	ENSOMYG00000020994	ENSOMYG00000020990	ENSOMYG00000020948	ENSOMYG00000020912	ENSOMYG00000020884 ##22	ENSOMYG00000020876	ENSOMYG00000055120 ##29	ENSOMYG00000058236	pkn1b (ENSOMYG00000023199)	ENSOMYG00000023926	ENSOMYG00000023958	ENSOMYG00000024022	pglyrp6 (ENSOMYG00000024044)	ENSOMYG00000024083	ENSOMYG00000066907	ptger1b (ENSOMYG00000024118)	ilf3b (ENSOMYG00000024485)	farsa (ENSOMYG00000026105)	syce2 (ENSOMYG00000026254)	gcdhb (ENSOMYG00000026310)
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	53	ENSGT00950000183144.B.ab	ENSGT00940000154277.b.b.b.b.a	ENSGT00940000161195.a.a.e	ENSGT00940000160152.k.a	ENSGT00390000012267.e.b.b	ENSGT00940000155858.e.e	ENSGT00390000000159.i.a	ENSGT00950000183099.a.b	ENSGT00550000075117.m.b.d	ENSGT00940000155632.o.c	ENSGT00530000064086.`b	ENSGT00940000165172.a.f.a	ENSGT00940000154912.u.a.d	ENSGT00940000159311.d.a.a.i.a	ENSGT00940000160024.c.a.b	ENSGT00940000156166.b.a.a.c ##22	ENSGT00530000063861.a.e ##29	ENSGT00940000154990.fb.b.a	ENSGT01100000263820.a	ENSGT00950000183036.b.f.j	ENSGT00390000000976.d.b.c	ENSGT00940000158718.a.b.j	ENSGT00390000000976.d.b.d.b	ENSGT00940000159979.a.a.a.a	ENSGT01030000234559.a.a.b.a.a.b.c	ENSGT00940000156719.`b	ENSGT00390000006387.p	ENSGT00940000168682.i.a	ENSGT00940000158116.a.b.b	ENSGT00940000158178.b.a.c.a.b	ENSGT00970000193546.b.b
Atlantic salmon	MODERN SPECIES	25	MAST1 (ENSSSAG00000008779)	rbp (ENSSSAG00000108597)	ENSSSAG00000059068	junbb (ENSSSAG00000084145)	HOOK2 (ENSSSAG00000067743)	ubn2b (ENSSSAG00000037952)	ENSSSAG00000039421	ENSSSAG00000041429	ENSSSAG00000109013	ENSSSAG00000041571	ENSSSAG00000105848	ENSSSAG00000066709	ddx39 (ENSSSAG00000045119)	ENSSSAG00000045176	ENSSSAG00000045195	ENSSSAG00000098070 ##22	ENSSSAG00000045313 ##29	pkn1b (ENSSSAG00000047954)	ENSSSAG00000046013	ENSSSAG00000046037	pglyrp6 (ENSSSAG00000110042)	ENSSSAG00000046110	ENSSSAG00000046174	ptger1b (ENSSSAG00000046169)	ilf3 (ENSSSAG00000046201)	syfa (ENSSSAG00000046336)	syce2 (ENSSSAG00000085624)	gcdhb (ENSSSAG00000046595)	ctl2 (ENSSSAG00000041935)	ENSSSAG00000058884	ENSSSAG00000058907
River trout	MODERN SPECIES		rtbdn (ENSSTUG00000003533)	ENSSTUG00000003523	junbb (ENSSTUG00000003514)	HOOK2 (ENSSTUG00000003162)	trir (ENSSTUG00000003123)	ubn2b (ENSSTUG00000002990)	TTC26 (ENSSTUG00000002163)	rpsa (ENSSTUG00000002092)	slc25a38a (ENSSTUG00000002078)	MYH9 (ENSSTUG00000001873)	txn2 (ENSSTUG00000001817)	ENSSTUG00000001809	DDX39A (ENSSTUG00000001691)	ENSSTUG00000001676	ENSSTUG00000001661	ENSSTUG00000001648 ##22	ENSSTUG00000001635 ##29	ENSSTUG00000001632	pkn1b (ENSSTUG00000001364)	ENSSTUG00000001307	MCOLN1 (ENSSTUG00000001155)	trappc5 (ENSSTUG00000000758)	pglyrp6 (ENSSTUG00000000752)	ENSSTUG00000000550	ptger1b (ENSSTUG00000000078)	ilf3b (ENSSTUG00000042306)	farsa (ENSSTUG00000041965)	syce2 (ENSSTUG00000041943)	gcdhb (ENSSTUG00000041061)	ENSSTUG00000041011	SLC44A2 (ENSSTUG00000040112)
Salmo	ANCESTRAL SPECIES	69	ENSGT00940000154819.a.b.c.a.h	ENSGT00940000156887.a.e.b	ENSGT00530000063000.a.a.b.i.c.b	ENSGT00940000157700.d.b	ENSGT00950000183144.B.`b	ENSGT00940000154277.b.b.b.b.b	ENSGT00940000161195.a.a.f	ENSGT00940000160152.k.b	ENSGT00390000012267.e.b.a	ENSGT00940000155858.e.f	ENSGT00940000155632.o.d	ENSGT00530000064086.ab	ENSGT00940000165172.a.f.b	ENSGT00940000154912.u.a.c	ENSGT00940000159311.d.a.a.i.b	ENSGT00940000156166.b.a.a.d ##22	ENSGT00530000063861.a.f ##29	ENSGT00940000154990.fb.b.b	ENSGT01100000263820.b	ENSGT00950000183036.b.f.k	ENSGT00390000000976.d.b.d.a	ENSGT00940000158718.a.b.i	ENSGT00940000159979.a.a.a.b	ENSGT01030000234559.a.a.b.a.a.b.d	ENSGT00940000156719.ab	ENSGT00390000006387.o	ENSGT00940000168682.i.b	ENSGT00940000158116.a.b.a	ENSGT00970000193546.b.a	ENSGT00940000158178.b.a.c.a.a	ENSGT00940000165438.a.a.f
River trout	MODERN SPECIES	25	MAST1 (ENSSTUG00000018719)	rtbdn (ENSSTUG00000018684)	ENSSTUG00000018679	junbb (ENSSTUG00000018671)	ENSSTUG00000018644	HOOK2 (ENSSTUG00000017625)	trir (ENSSTUG00000017553)	ubn2b (ENSSTUG00000017508)	ENSSTUG00000017497	SLC25A38 (ENSSTUG00000017494)	MYH9 (ENSSTUG00000013961)	txn2 (ENSSTUG00000013724)	ENSSTUG00000013717	DDX39A (ENSSTUG00000013590)	ENSSTUG00000013557	ENSSTUG00000013547 ##22	ENSSTUG00000013522 ##29	pkn1b (ENSSTUG00000012422)	ENSSTUG00000012300	MCOLN1 (ENSSTUG00000012212)	trappc5 (ENSSTUG00000012178)	pglyrp6 (ENSSTUG00000012163)	ENSSTUG00000012114	ENSSTUG00000012035	farsa (ENSSTUG00000011870)	syce2 (ENSSTUG00000011855)	gcdhb (ENSSTUG00000011516)	ENSSTUG00000011456	SLC44A2 (ENSSTUG00000006073)	ENSSTUG00000005820	nfil3-6 (ENSSTUG00000005808)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000085374	MAST1 (ENSSSAG00000068180)	rtbdn (ENSSSAG00000001518)	ENSSSAG00000117056	junbb (ENSSSAG00000084114)	HOOK2 (ENSSSAG00000009349)	trir (ENSSSAG00000102091)	ubn2b (ENSSSAG00000067711)	ENSSSAG00000067676	ENSSSAG00000116040	ENSSSAG00000092859	ENSSSAG00000084151	ENSSSAG00000066742	ENSSSAG00000066700	ENSSSAG00000097197	gfi1b (ENSSSAG00000066672) ##22	ENSSSAG00000110041 ##29	pkn1b (ENSSSAG00000045359)	ENSSSAG00000105147	ENSSSAG00000046261	ENSSSAG00000046207	ENSSSAG00000086347	ptger1b (ENSSSAG00000101877)	ILF3 (ENSSSAG00000043450)	farsa (ENSSSAG00000043215)	syce2 (ENSSSAG00000083150)	GCDH (ENSSSAG00000042931)	ENSSSAG00000042899	ENSSSAG00000110909	ENSSSAG00000081969	nfil3-6 (ENSSSAG00000103437)
Huchen	MODERN SPECIES	317	ENSHHUG00000039023	junbb (ENSHHUG00000039017)	HOOK2 (ENSHHUG00000038729)	trir (ENSHHUG00000038721)	ubn2b (ENSHHUG00000038701)	TTC26 (ENSHHUG00000038651)	rpsa (ENSHHUG00000038579)	SLC25A38 (ENSHHUG00000038536)	MYH9 (ENSHHUG00000036440)	txn2 (ENSHHUG00000036406)	ENSHHUG00000036396	DDX39A (ENSHHUG00000036327)	ENSHHUG00000036322	ENSHHUG00000036319	ENSHHUG00000036315	ENSHHUG00000036311 ##22	ENSHHUG00000036292 ##29	pkn1b (ENSHHUG00000035769)	ENSHHUG00000035732	MCOLN1 (ENSHHUG00000035660)	trappc5 (ENSHHUG00000035622)	pglyrp6 (ENSHHUG00000035610)	ENSHHUG00000035526	ptger1b (ENSHHUG00000035515)	ilf3b (ENSHHUG00000035265)	farsa (ENSHHUG00000035237)	gcdhb (ENSHHUG00000035194)	SLC44A2 (ENSHHUG00000034862)	ENSHHUG00000034829	ENSHHUG00000034826	nfil3-6 (ENSHHUG00000034824)
Northern pike	MODERN SPECIES	10	MAST1 (ENSELUG00000011095)	rtbdn (ENSELUG00000010978)	junbb (ENSELUG00000010952)	ENSELUG00000010934	hook2 (ENSELUG00000010917)	trir (ENSELUG00000010844)	ubn2b (ENSELUG00000010871)	TTC26 (ENSELUG00000010823)	rpsa (ENSELUG00000010762)	slc25a38a (ENSELUG00000010718)	MYH9 (ENSELUG00000010704)	txn2 (ENSELUG00000010652)	ENSELUG00000010612	DDX39A (ENSELUG00000010581)	ENSELUG00000010551	ENSELUG00000010543 ##22	ENSELUG00000010531 ##29	pkn1b (ENSELUG00000010494)	ENSELUG00000010461	MCOLN1 (ENSELUG00000010448)	trappc5 (ENSELUG00000010420)	pglyrp6 (ENSELUG00000000376)	ENSELUG00000010335	ENSELUG00000024660	ptger1b (ENSELUG00000010295)	ilf3b (ENSELUG00000000372)	farsa (ENSELUG00000010183)	syce2 (ENSELUG00000010116)	gcdhb (ENSELUG00000010142)	SLC44A2 (ENSELUG00000010087)	ENSELUG00000009955
Otomorpha	ANCESTRAL SPECIES	19				ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00940000158718.a.b	ENSGT00940000160152	ENSGT00940000161195.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000168682	ENSGT00940000158116.a.b
Otophysi	ANCESTRAL SPECIES	120	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b	ENSGT00390000000022.b.a.a	ENSGT00390000004383	ENSGT00940000154892.m.a	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000160152
Characiphysae	ANCESTRAL SPECIES	26	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b	ENSGT00390000000022.b.a.a	ENSGT00390000004383	ENSGT00940000154892.m.a	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00950000183144.B	ENSGT00940000157700.d	ENSGT00530000063000.a.a.b.i	ENSGT00940000153578.A.e	ENSGT00940000157864.a.b	ENSGT00720000108861	ENSGT00940000155004.t.a.a
Characiphysae_b	ANCESTRAL SPECIES	17	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b	ENSGT00390000000022.b.a.a	ENSGT00390000004383	ENSGT00940000154892.m.a	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00950000183144.B	ENSGT00940000157700.d	ENSGT00530000063000.a.a.b.i	ENSGT00940000153578.A.e	ENSGT00940000157864.a.b	ENSGT00940000157333.b	ENSGT00390000000204
Characoidei	ANCESTRAL SPECIES	90	ENSGT00940000155955.C.i.a	ENSGT00390000002918.a.b	ENSGT00390000000022.b.a.a	ENSGT00390000004383	ENSGT00940000154892.m.a	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00530000063960	ENSGT00940000155858.e	ENSGT00390000012267	ENSGT00940000160152	ENSGT00940000161195.a.a	ENSGT00950000183144.B	ENSGT00940000157700.d	ENSGT00530000063000.a.a.b.i	ENSGT00940000153578.A.e	ENSGT00940000157864.a.b
Mexicana tetra	MODERN SPECIES	15	PMM1 (ENSAMXG00000029803)	CSDC2 (ENSAMXG00000030421)	polr3h (ENSAMXG00000015544)	ACO2 (ENSAMXG00000015485)	TOB2 (ENSAMXG00000031031)	tefb (ENSAMXG00000015442)	zc3h7ba (ENSAMXG00000015389)	rangap1a (ENSAMXG00000015355)	slc25a38a (ENSAMXG00000030384)	MYH9 (ENSAMXG00000015296)	txn2 (ENSAMXG00000038781)	ENSAMXG00000015267	ddx39ab (ENSAMXG00000018631)	ENSAMXG00000015240	ENSAMXG00000033415	ENSAMXG00000015228 ##22	ENSAMXG00000015212 ##29	pkn1b (ENSAMXG00000015189)	ENSAMXG00000029303	MCOLN1 (ENSAMXG00000015134)	trir (ENSAMXG00000042277)	ubn2b (ENSAMXG00000015063)	TRAPPC5 (ENSAMXG00000038506)	hook2 (ENSAMXG00000015035)	junbb (ENSAMXG00000034822)	rtbdn (ENSAMXG00000005331)	MAST1 (ENSAMXG00000005313)	ENSAMXG00000042693	ENSAMXG00000019106	ENSAMXG00000005293	SPHK1 (ENSAMXG00000041303)
Red-bellied piranha	MODERN SPECIES	295	GUCY2C (ENSPNAG00000002932)	PMM1 (ENSPNAG00000002947)	CSDC2 (ENSPNAG00000013797)	polr3h (ENSPNAG00000004860)	aco2 (ENSPNAG00000013876)	TOB2 (ENSPNAG00000007174)	tefb (ENSPNAG00000013890)	zc3h7ba (ENSPNAG00000013903)	rangap1a (ENSPNAG00000013921)	slc25a38a (ENSPNAG00000002998)	MYH9 (ENSPNAG00000014179)	txn2 (ENSPNAG00000003052)	ENSPNAG00000003055	ddx39ab (ENSPNAG00000014271)	ENSPNAG00000014282	ENSPNAG00000014299 ##22	ENSPNAG00000014328 ##29	pkn1b (ENSPNAG00000014421)
Channel catfish	MODERN SPECIES	3	PMM1 (ENSIPUG00000019726)	ENSIPUG00000019740	ENSIPUG00000019747	polr3h (ENSIPUG00000019750)	TOB2 (ENSIPUG00000019765)	TEF (ENSIPUG00000019782)	zc3h7ba (ENSIPUG00000019805)	RANGAP1 (ENSIPUG00000019855)	slc25a38a (ENSIPUG00000021230)	MYH9 (ENSIPUG00000021243)	txn2 (ENSIPUG00000021332)	ENSIPUG00000021335	DDX39A (ENSIPUG00000021341)	ENSIPUG00000021400	ENSIPUG00000021404	ENSIPUG00000021407 ##22	ENSIPUG00000021411	pkn1b (ENSIPUG00000021417)	ENSIPUG00000021440 ##26	MCOLN1 (ENSIPUG00000021446)	TRAPPC5 (ENSIPUG00000021452)	ubn2b (ENSIPUG00000021459)	c12h19orf43 (ENSIPUG00000021520)	hook2 (ENSIPUG00000021528)	junb (ENSIPUG00000021554)	rtbdn (ENSIPUG00000021562)	ENSIPUG00000021579	MAST1 (ENSIPUG00000021594)	ENSIPUG00000021604	ENSIPUG00000021612	SPHK1 (ENSIPUG00000021631)
Cyprinoidei	ANCESTRAL SPECIES	163		ENSGT00390000002918.a.b.d.a	ENSGT00390000000022.b.a.a	ENSGT00390000004383	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.v.a	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT00940000168611	ENSGT00950000183036.b.f
Cyprininae	ANCESTRAL SPECIES	187	ENSGT00390000002918.a.b.d.a.a	ENSGT00390000000022.b.a.a.a	ENSGT00390000004383.k	ENSGT00940000154208.d.k	ENSGT00940000156578.a.a.d	ENSGT00390000018542.a.b.c	ENSGT00440000039203.j.c	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.b.b	ENSGT00550000075117.m.b.a	ENSGT00940000155632.o	ENSGT00530000064086.w	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b	ENSGT00940000165172.a.c	ENSGT00940000154912.v.a.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000177829	ENSGT00940000154990.fb.b.h	ENSGT00940000168611.a	ENSGT00950000183036.b.f.c.a	ENSGT00940000160987.e.b.a.b.a	ENSGT00940000155858.e.b	ENSGT00390000012267.i	ENSGT00940000160152	ENSGT00940000161195.a.a.c	ENSGT00950000183144.B.bb	ENSGT00940000157700.d.w	ENSGT00530000063000.a.a.b.i.a	ENSGT00950000182923.A.`b.a	ENSGT00940000153578.A.e.b
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	50	ENSCARG00000025452	ENSCARG00000025459	ENSCARG00000025463	MYH9 (ENSCARG00000025616)	ENSCARG00000030225	ENSCARG00000030230	ENSCARG00000030234	ENSCARG00000030242	rangap1a (ENSCARG00000030280)	ENSCARG00000030360	txn2 (ENSCARG00000030363)	ENSCARG00000030367	ENSCARG00000030402	ddx39ab (ENSCARG00000030415)	ENSCARG00000030543	ENSCARG00000030550 ##22	ENSCARG00000030555 ##29	ENSCARG00000030563	pkn1b (ENSCARG00000030600)	ENSCARG00000031189	MCOLN1 (ENSCARG00000031247)	ENSCARG00000031624	ENSCARG00000031627	ENSCARG00000031631	ENSCARG00000031641	mrps7 (ENSCARG00000031655)	mif4gdb (ENSCARG00000031666)	sstr5 (ENSCARG00000031675)	ENSCARG00000031687	ENSCARG00000031698	GPR139 (ENSCARG00000031709)
Goldfish	MODERN SPECIES	50	rrp7a (ENSCARG00000035554)	ENSCARG00000035548	ENSCARG00000035536	ENSCARG00000035532	ENSCARG00000035524	ENSCARG00000035521	ENSCARG00000035517	rangap1a (ENSCARG00000034790)	ENSCARG00000034759	MYH9 (ENSCARG00000031705)	txn2 (ENSCARG00000031598)	ENSCARG00000031586	ENSCARG00000031581	ddx39ab (ENSCARG00000031454)	ENSCARG00000031413	ENSCARG00000031391 ##22	ENSCARG00000031341 ##29	PMM1 (ENSCARG00000031301)	ENSCARG00000029101	ENSCARG00000029031	plbd1a (ENSCARG00000028639)	pick1 (ENSCARG00000028518)	ENSCARG00000028505	ENSCARG00000028500	ENSCARG00000028479	ENSCARG00000028371	ENSCARG00000028249	cygb1 (ENSCARG00000028224)	SPHK1 (ENSCARG00000028205)	ENSCARG00000028171	ATG4D (ENSCARG00000028161)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	22	ENSCARG00000000907	ENSCARG00000000901	cygb1 (ENSCARG00000000896)	ENSCARG00000000892	ENSCARG00000000883	ENSCARG00000000872	ENSCARG00000000859	ENSCARG00000000848	ENSCARG00000000831	ENSCARG00000000827	MAST1 (ENSCARG00000000820)	ENSCARG00000000807	ENSCARG00000000784	ENSCARG00000000765	ddx39ab (ENSCARG00000000732)	ENSCARG00000000709 ##22	pkn1b (ENSCARG00000000476)	ENSCARG00000000331	ENSCARG00000000322	MCOLN1 (ENSCARG00000000299)	ENSCARG00000000286	ubn2b (ENSCARG00000000261)	trir (ENSCARG00000000228)	junbb (ENSCARG00000000210)	rtbdn (ENSCARG00000000201)	GRIN2B (ENSCARG00000000186)	ENSCARG00000000174	ENSCARG00000000162	ENSCARG00000000152	ENSCARG00000000144	rrp7a (ENSCARG00000000135)
Goldfish	MODERN SPECIES	22	polr3h (ENSCARG00000000214)	TOB2 (ENSCARG00000000196)	tefb (ENSCARG00000000184)	ENSCARG00000000175	ENSCARG00000000165	zc3h7ba (ENSCARG00000000159)	ENSCARG00000006444	ENSCARG00000006432	ENSCARG00000006414	ENSCARG00000006399	slc25a38a (ENSCARG00000006358)	MYH9 (ENSCARG00000004922)	ENSCARG00000004794	ENSCARG00000004787	ddx39ab (ENSCARG00000004740)	ENSCARG00000004725 ##22	pkn1b (ENSCARG00000004170)	ENSCARG00000004060	ENSCARG00000004034	ENSCARG00000004014	ENSCARG00000003994	ENSCARG00000003979	EMP1 (ENSCARG00000003960)	ENSCARG00000003950	ENSCARG00000003933	trir (ENSCARG00000003920)	ubn2b (ENSCARG00000003829)	ENSCARG00000003792	MCOLN1 (ENSCARG00000003394)	ENSCARG00000003347	CREBBP (ENSCARG00000003136)
Cyprininae_a	ANCESTRAL SPECIES	310				ENSGT00940000154208.d.k	ENSGT00940000156578.a.a.d	ENSGT00390000018542.a.b.c	ENSGT00440000039203.j.c	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.b.b.b	ENSGT00550000075117.m.b.a	ENSGT00940000155632.o.o	ENSGT00530000064086.w	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b	ENSGT00940000165172.a.c	ENSGT00940000154912.v.a.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b.h	ENSGT00940000168611.a	ENSGT00950000183036.b.f.c.a	ENSGT00940000160987.e.b.a.b.a	ENSGT00940000155858.e.b	ENSGT00390000012267.i	ENSGT00940000160152	ENSGT00940000161195.a.a.c	ENSGT00950000183144.B.bb	ENSGT00940000163472.i.a.b.b.a.a.b.b.b.a.a.a.b.b.b	ENSGT00940000157700.d.w	ENSGT00530000063000.a.a.b.i.a	ENSGT00950000182923.A.`b.a	ENSGT00940000153578.A.e.b
Common carp reference	MODERN SPECIES	1	ENSCCRG00000058706	zc3h7ba (ENSCCRG00000042432)	rangap1a (ENSCCRG00000042433)	ENSCCRG00000074857	ENSCCRG00000050806	ENSCCRG00000009432	ENSCCRG00000054875	ENSCCRG00000043882	ENSCCRG00000050601	txn2 (ENSCCRG00000078674)	ENSCCRG00000021691	ENSCCRG00000021683	ddx39ab (ENSCCRG00000057584)	ENSCCRG00000021677	ENSCCRG00000077759	ENSCCRG00000022149 ##22	ENSCCRG00000021662 ##29	pkn1b (ENSCCRG00000054870)	ENSCCRG00000034372	ENSCCRG00000076588	ENSCCRG00000066760	zgc:136767 (ENSCCRG00000016949)	ENSCCRG00000016944	ENSCCRG00000059729	ENSCCRG00000060263	ENSCCRG00000072846	ENSCCRG00000063464	ENSCCRG00000080742	trir (ENSCCRG00000054616)	ubn2b (ENSCCRG00000010344)	ENSCCRG00000011540
Golden-line barbel	MODERN SPECIES	886	PMM1 (ENSSGRG00000044852)	CSDC2 (ENSSGRG00000044853)	TOB2 (ENSSGRG00000044855)	tefb (ENSSGRG00000044856)	zc3h7ba (ENSSGRG00000044858)	rangap1a (ENSSGRG00000044922)	ENSSGRG00000045097	slc25a38a (ENSSGRG00000045098)	MYH9 (ENSSGRG00000045100)	txn2 (ENSSGRG00000045651)	ENSSGRG00000045652	ENSSGRG00000045662	ENSSGRG00000045690	ddx39ab (ENSSGRG00000045695)	ENSSGRG00000045809	ENSSGRG00000045810 ##22	ENSSGRG00000045812	pkn1b (ENSSGRG00000045821)	ENSSGRG00000045934	MCOLN1 (ENSSGRG00000045937)	zgc:136767 (ENSSGRG00000046005)
Clupeiformes	ANCESTRAL SPECIES	17	ENSGT00940000156887.a	ENSGT00530000063000.a.a.b.i	ENSGT00940000157700.d	ENSGT00950000183144.B	ENSGT00940000161195.a.a	ENSGT00940000161195.b	ENSGT00940000160152	ENSGT00390000012267	ENSGT00940000155858.e	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086	ENSGT00940000165172.a	ENSGT00940000154912.u.b	ENSGT00940000159311.d.a.a	ENSGT00940000156166.b.a.a ##22	ENSGT00940000177829	ENSGT00530000063861.a ##29	ENSGT00940000154990.fb.b	ENSGT01100000263705	ENSGT00940000168611	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00940000158718.a.b	ENSGT00940000159979.a.b.d	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000168682	ENSGT00940000158116.a.b
Denticle herring	MODERN SPECIES	17	st13 (ENSDCDG00000014821)	rbx1 (ENSDCDG00000014818)	ENSDCDG00000014808	ZC3H7B (ENSDCDG00000014806)	tefb (ENSDCDG00000014799)	TOB2 (ENSDCDG00000014782)	aco2 (ENSDCDG00000014738)	polr3h (ENSDCDG00000014710)	CSDC2 (ENSDCDG00000014701)	PMM1 (ENSDCDG00000014692)	txn2 (ENSDCDG00000014684)	ENSDCDG00000014679	ENSDCDG00000014350	DDX39A (ENSDCDG00000014300)	LRRC8E (ENSDCDG00000013968)	ENSDCDG00000013934 ##22	ENSDCDG00000005425	pkn1b (ENSDCDG00000005321)	ENSDCDG00000005316	MCOLN1 (ENSDCDG00000005225)	ENSDCDG00000005216	ENSDCDG00000005213	ubtf (ENSDCDG00000005186)	slc4a1a (ENSDCDG00000004996)	ENSDCDG00000004992	selenow2a (ENSDCDG00000004988)	NGFR (ENSDCDG00000004984)	NXPH3 (ENSDCDG00000004981)	NXPH3 (ENSDCDG00000004980)	spop (ENSDCDG00000004979)	ndufa4a (ENSDCDG00000004976)
Osteoglossocephalai	ANCESTRAL SPECIES	275													ENSGT00550000075117.m.a	ENSGT00940000155632.p	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158914	ENSGT00940000154990	ENSGT01100000263820	ENSGT00950000183036.b.f	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT00950000183036.b.e	ENSGT00390000000976	ENSGT00940000158718.a.a	ENSGT00940000165433	ENSGT00940000159979.a.b	ENSGT01030000234559.a.a.b.a.a.a
Clupeocephala	ANCESTRAL SPECIES	96	ENSGT00390000007779	ENSGT00940000154272.B.b	ENSGT00940000158772.b	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00940000155159.C	ENSGT00940000155858.f	ENSGT00390000000159	ENSGT00550000075117.m.a	ENSGT00940000155632.p	ENSGT00940000154912.v	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00990000204804	ENSGT00950000183036.b.e	ENSGT00940000158718.a.a	ENSGT00940000165433
Euteleosteomorpha	ANCESTRAL SPECIES	18	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00940000155159.C	ENSGT00940000155858.f	ENSGT00390000000159	ENSGT00950000183099	ENSGT00550000075117.m.a	ENSGT00940000155632.p	ENSGT00940000154912.v	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00990000204804	ENSGT00950000183036.b.e	ENSGT00390000000976.d.a	ENSGT00940000158718.a.a	ENSGT00940000165433	ENSGT00940000164979	ENSGT00940000158604	ENSGT00390000006555	ENSGT00940000158476.a	ENSGT00940000160081.c.a	ENSGT00940000160777
Protacanthopterygii	ANCESTRAL SPECIES	76	ENSGT00940000167317	ENSGT00530000069385	ENSGT00730000111057.d	ENSGT00940000158838	ENSGT00940000155641.g.b	ENSGT00940000164538	ENSGT00940000156498.g.b	ENSGT00390000010581	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b	ENSGT00390000016493	ENSGT00440000033742.a.b.c	ENSGT00940000165172.b	ENSGT00940000154912.v	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.b	ENSGT00940000158914	ENSGT00940000154990.fb.a	ENSGT00390000009916	ENSGT00990000204616	ENSGT00980000199991	ENSGT00390000002789	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.b.a.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	100	ENSGT00940000157195.n.e	ENSGT00940000167317.c.a	ENSGT00530000069385.d.a	ENSGT00730000111057.d.c	ENSGT00940000158838.b	ENSGT00940000155641.g.b.e	ENSGT00940000164538.d	ENSGT00940000156498.g.b	ENSGT00390000010581.a	ENSGT00390000012364.b.c	ENSGT00390000016493	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00980000199991	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00940000156166.b.a.b.b ##22	ENSGT00390000017614.e.a.b	ENSGT00390000017614.e.a.a.b.a	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.l	ENSGT00390000009916.d	ENSGT00990000204616.a
Salmoninae_a	ANCESTRAL SPECIES	82	ENSGT00940000167317.c.a	ENSGT00530000069385.d.a	ENSGT00730000111057.d.c	ENSGT00940000158838.b	ENSGT00940000155641.g.b.e	ENSGT00940000164538.d.c.a	ENSGT00940000156498.g.b.d	ENSGT00390000010581.b	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b.d	ENSGT00390000016493.k	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b.c ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000157195.n.e	ENSGT00940000167317.c.a	ENSGT00730000111057.d.c	ENSGT00940000158838.b	ENSGT00940000155641.g.b.e	ENSGT00940000164538.d.c.a	ENSGT00940000156498.g.b.d	ENSGT00390000010581.b	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b.d	ENSGT00390000016493.k	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b.c ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT01010000229885	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b
Oncorhynchus_a	ANCESTRAL SPECIES	51	ENSGT00940000157195.n.e	ENSGT00940000167317.c.a	ENSGT00730000111057.d.c	ENSGT00940000158838.b	ENSGT00940000155641.g.b.e	ENSGT00940000164538.d.c.a	ENSGT00940000156498.g.b.d	ENSGT00390000010581.b	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b.d	ENSGT00390000016493.k	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b.c ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT01010000229885	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b
Coho salmon	MODERN SPECIES		znf207b (ENSOKIG00005002881)	rhbdl3 (ENSOKIG00005002846)	rhot1b (ENSOKIG00005002821)	ENSOKIG00005002816	ENSOKIG00005002813	ENSOKIG00005002809	ADAP2 (ENSOKIG00005002786)	tefm (ENSOKIG00005002774)	ENSOKIG00005002751	suz12b (ENSOKIG00005002646)	utp6 (ENSOKIG00005002053)	rab11fip4b (ENSOKIG00005001816)	ENSOKIG00005001794	DDX39A (ENSOKIG00005001783)	EVI5L (ENSOKIG00005001624) ##21	ENSOKIG00005001558 ##22	ENSOKIG00005001554	map2k7 (ENSOKIG00005001518)	PKN1 (ENSOKIG00005000834)	si:ch211-214c7.5 (ENSOKIG00005000539)	ENSOKIG00005000530	ltv1 (ENSOKIG00005000517)	capn9 (ENSOKIG00005000409)	taf5l (ENSOKIG00005000299)	nup133 (ENSOKIG00005000208)	ACTA1 (ENSOKIG00005000036)	CCSAP (ENSOKIG00005000018)	RHOU (ENSOKIG00005016090)	dla (ENSOKIG00005016056)	ENSOKIG00005016047	ENSOKIG00005009582
Chinook salmon	MODERN SPECIES	4	nop53 (ENSOTSG00005001988)	ENSOTSG00005001679	otx5 (ENSOTSG00005046969)	psma6l (ENSOTSG00005046968)	ENSOTSG00005046967	si:dkey-260j18.2 (ENSOTSG00005046966)	slc5a2 (ENSOTSG00005046959)	fbxo46 (ENSOTSG00005046950)	coq8b (ENSOTSG00005046836)	ENSOTSG00005046830	numbl (ENSOTSG00005046829)	ENSOTSG00005046828	ENSOTSG00005046827	DDX39A (ENSOTSG00005046826)	EVI5L (ENSOTSG00005046825) ##21	ENSOTSG00005046824 ##22	ENSOTSG00005046823	map2k7 (ENSOTSG00005046822)	PKN1 (ENSOTSG00005045577)	si:ch211-214c7.5 (ENSOTSG00005045569)	ENSOTSG00005045566	ltv1 (ENSOTSG00005045563)	capn9 (ENSOTSG00005045125)	taf5l (ENSOTSG00005045114)	nup133 (ENSOTSG00005045080)	ACTA1 (ENSOTSG00005045074)	CCSAP (ENSOTSG00005045073)	RHOU (ENSOTSG00005045072)	dla (ENSOTSG00005045053)	ENSOTSG00005045051	ENSOTSG00005035141
Rainbow trout	MODERN SPECIES	8	septin9b (ENSOMYG00000059396)	ENSOMYG00000046088	ZNF207 (ENSOMYG00000046126)	ENSOMYG00000046132	rhot1b (ENSOMYG00000046138)	ENSOMYG00000046150	ADAP2 (ENSOMYG00000046156)	tefm (ENSOMYG00000046177)	atad5b (ENSOMYG00000046186)	suz12b (ENSOMYG00000046196)	utp6 (ENSOMYG00000046210)	rab11fip4b (ENSOMYG00000046257)	ENSOMYG00000046307	ENSOMYG00000046318	ENSOMYG00000005540 ##21	ENSOMYG00000005658 ##22	ENSOMYG00000070447	map2k7 (ENSOMYG00000005818)	ENSOMYG00000007032	ENSOMYG00000074997	si:ch211-214c7.5 (ENSOMYG00000007848)	ENSOMYG00000051508	ENSOMYG00000008034	ltv1 (ENSOMYG00000008075)	capn9 (ENSOMYG00000008726)	taf5l (ENSOMYG00000009508)	nup133 (ENSOMYG00000010021)	ACTA1 (ENSOMYG00000030567)	CCSAP (ENSOMYG00000010980)	RHOU (ENSOMYG00000010995)	dla (ENSOMYG00000011005)
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000167317.c.a	ENSGT00530000069385.d.a	ENSGT00730000111057.d.c	ENSGT00940000158838.b	ENSGT00940000155641.g.b.e	ENSGT00940000164538.d.c.a	ENSGT00940000156498.g.b.d	ENSGT00390000010581.b	ENSGT00940000153469.a.a.l	ENSGT00390000012364.b.d	ENSGT00390000016493.k	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b.c ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00390000011529.j	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b	ENSGT00950000182787.A.a.d.b	ENSGT01030000234599.a.a.ab.a
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000076210	ENSSSAG00000086258	ZNF207 (ENSSSAG00000076235)	ENSSSAG00000083659	rhot1b (ENSSSAG00000076267)	ENSSSAG00000007919	ADAP2 (ENSSSAG00000076610)	tefm (ENSSSAG00000076655)	atad5b (ENSSSAG00000076659)	suz12b (ENSSSAG00000005828)	utp6 (ENSSSAG00000076822)	rab11fip4b (ENSSSAG00000076852)	ENSSSAG00000113531	ENSSSAG00000076934 ##21	ENSSSAG00000076919	ENSSSAG00000098757 ##22	map2k7 (ENSSSAG00000004417)	ENSSSAG00000004995	si:ch211-214c7.5 (ENSSSAG00000005693)	ENSSSAG00000109745	ifngr1b (ENSSSAG00000005697)	ltv1l (ENSSSAG00000005700)	ENSSSAG00000089284	nup133 (ENSSSAG00000006278)	ACTA1 (ENSSSAG00000007690)	CCSAP (ENSSSAG00000007704)	RHOU (ENSSSAG00000007710)	dla (ENSSSAG00000007717)	ENSSSAG00000083618	myom2a (ENSSSAG00000119139)	ENSSSAG00000007744
River trout	MODERN SPECIES	5	ENSSTUG00000017204	ENSSTUG00000017186	znf207b (ENSSTUG00000017156)	rhbdl3 (ENSSTUG00000017111)	rhot1b (ENSSTUG00000015885)	ENSSTUG00000015847	ADAP2 (ENSSTUG00000015811)	tefm (ENSSTUG00000015800)	ENSSTUG00000015774	suz12b (ENSSTUG00000015071)	utp6 (ENSSTUG00000014887)	rab11fip4b (ENSSTUG00000014791)	ENSSTUG00000014782	DDX39A (ENSSTUG00000014760)	EVI5L (ENSSTUG00000014499) ##21	ENSSTUG00000014478 ##22	map2k7 (ENSSTUG00000014327)	PKN1 (ENSSTUG00000013332)	si:ch211-214c7.5 (ENSSTUG00000013260)	ENSSTUG00000013246	ltv1 (ENSSTUG00000013229)	capn9 (ENSSTUG00000012615)	taf5l (ENSSTUG00000012578)	nup133 (ENSSTUG00000011820)	ACTA1 (ENSSTUG00000011784)	CCSAP (ENSSTUG00000011782)	RHOU (ENSSTUG00000011777)	dla (ENSSTUG00000011770)	ENSSTUG00000011765	ENSSTUG00000007759	myom2a (ENSSTUG00000007222)
Huchen	MODERN SPECIES	237	ENSHHUG00000040552	ZNF207 (ENSHHUG00000040528)	rhbdl3 (ENSHHUG00000040524)	rhot1b (ENSHHUG00000040376)	ENSHHUG00000040367	ADAP2 (ENSHHUG00000040359)	tefm (ENSHHUG00000040355)	atad5b (ENSHHUG00000040340)	suz12b (ENSHHUG00000040246)	utp6 (ENSHHUG00000040223)	ENSHHUG00000040214	rab11fip4b (ENSHHUG00000040191)	ENSHHUG00000040185	DDX39A (ENSHHUG00000040112)	EVI5L (ENSHHUG00000040005) ##21	ENSHHUG00000039987 ##22	map2k7 (ENSHHUG00000039957)	PKN1 (ENSHHUG00000039787)	si:ch211-214c7.5 (ENSHHUG00000039773)	ENSHHUG00000039769	ENSHHUG00000039760	ltv1 (ENSHHUG00000039717)	capn9 (ENSHHUG00000039464)	taf5l (ENSHHUG00000039452)	nup133 (ENSHHUG00000039439)	ACTA1 (ENSHHUG00000038970)	CCSAP (ENSHHUG00000038963)	RHOU (ENSHHUG00000038957)	dla (ENSHHUG00000038935)	ENSHHUG00000038924	ENSHHUG00000037465
Salmoninae	ANCESTRAL SPECIES	100	ENSGT00390000012364.b.c	ENSGT00390000016493	ENSGT00440000033742.a.b.c.b	ENSGT00940000165172.b.a	ENSGT00940000154912.v.e.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b.a ##22	ENSGT00940000158914.a	ENSGT00940000154990.fb.a.k.b	ENSGT00390000009916.c	ENSGT00990000204616.b	ENSGT00980000199991	ENSGT00390000002789.i	ENSGT00940000158966.e	ENSGT00940000153342.b.fb	ENSGT00940000156166.b.a.b.b ##22	ENSGT00390000017614.e.a.b	ENSGT00390000017614.e.a.a.b.a	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.l	ENSGT00390000009916.d	ENSGT00990000204616.a	ENSGT00390000002789.j	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529	ENSGT00940000156048.e.b.a.b.b	ENSGT00390000003512.r.d	ENSGT00940000156644.e.a.g	ENSGT00940000159781.b.e	ENSGT00940000160859.b
Huchen	MODERN SPECIES	1116					rhot1b (ENSHHUG00000007469)	ENSHHUG00000007999	ADAP2 (ENSHHUG00000008006)	ENSHHUG00000008030	suz12b (ENSHHUG00000008057)	utp6 (ENSHHUG00000008488)	rab11fip4b (ENSHHUG00000008555)	ENSHHUG00000008633	DDX39A (ENSHHUG00000008636)	EVI5L (ENSHHUG00000008672) ##21	ENSHHUG00000008693	ENSHHUG00000008698 ##22
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000167317.c.b	ENSGT00530000069385.d.b	ENSGT00730000111057.d.d	ENSGT00940000158838.a	ENSGT00940000155641.g.b.f	ENSGT00940000164538.d.c.b	ENSGT00940000156498.g.b.c	ENSGT00390000010581.a	ENSGT00390000012364.b.c	ENSGT00390000016493.l	ENSGT00440000033742.a.b.c.a	ENSGT00940000165172.b.b	ENSGT00940000154912.v.e.b	ENSGT00940000154912.v.f	ENSGT00940000153846.a.b.d ##21	ENSGT00940000156166.b.a.b.b ##22	ENSGT00390000017614.e.a.b	ENSGT00390000017614.e.a.a.b.a	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.k.a
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT00530000069385.d.b	ENSGT00730000111057.d.d	ENSGT00940000158838.a	ENSGT00940000155641.g.b.f	ENSGT00940000164538.d.c.b	ENSGT00940000156498.g.b.c	ENSGT00390000010581.a	ENSGT00390000012364.b.c	ENSGT00390000016493.l	ENSGT00440000033742.a.b.c.a	ENSGT00940000165172.b.b	ENSGT00940000154912.v.e.b.a	ENSGT00940000154912.v.e.b.b	ENSGT00940000154912.v.f	ENSGT00940000153846.a.b.d ##21	ENSGT00940000156166.b.a.b.b ##22	ENSGT00970000193754.b.b.a	ENSGT00390000017614.e.a.b	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.l	ENSGT00390000009916.d	ENSGT00990000204616.a	ENSGT00980000199991	ENSGT00390000002789.j	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00530000069385.d.b	ENSGT00730000111057.d.d	ENSGT00940000158838.a	ENSGT00940000155641.g.b.f	ENSGT00940000164538.d.c.b	ENSGT00940000156498.g.b.c	ENSGT00390000010581.a	ENSGT00390000012364.b.c	ENSGT00390000016493.l	ENSGT00440000033742.a.b.c.a	ENSGT00940000165172.b.b	ENSGT00940000154912.v.e.b.a	ENSGT00940000154912.v.e.b.b	ENSGT00940000154912.v.f	ENSGT00940000153846.a.b.d ##21	ENSGT00940000156166.b.a.b.b ##22	ENSGT00970000193754.b.b.a	ENSGT00390000017614.e.a.b	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.l	ENSGT00390000009916.d	ENSGT00990000204616.a	ENSGT00980000199991	ENSGT00390000002789.j	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h	ENSGT00940000159781.b.f
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2905	ACTA1 (ENSOTSG00005035093)	ENSOTSG00005035106	ltv1 (ENSOTSG00005035109)	ENSOTSG00005035110	capn9 (ENSOTSG00005035114)	taf5l (ENSOTSG00005036972)	nup133 (ENSOTSG00005036977)	ENSOTSG00005037446	si:ch211-214c7.5 (ENSOTSG00005037447)	map2k7 (ENSOTSG00005037451)	ENSOTSG00005037458	ENSOTSG00005037463	ENSOTSG00005037465	ENSOTSG00005037466	ENSOTSG00005037469	ENSOTSG00005037472 ##22	ENSOTSG00005037474 ##22	ENSOTSG00005037476	ENSOTSG00005037477	ENSOTSG00005037478	ENSOTSG00005037480	map2k7 (ENSOTSG00005037481)	si:ch211-214c7.5 (ENSOTSG00005037695)	ENSOTSG00005037696	nup133 (ENSOTSG00005037698)	taf5l (ENSOTSG00005039678)	capn9 (ENSOTSG00005039702)	ltv1 (ENSOTSG00005041591)	ENSOTSG00005041596	ENSOTSG00005041598	ACTA1 (ENSOTSG00005041599)
Chinook salmon	MODERN SPECIES	2905	RHOU (ENSOTSG00005041605)	ACTA1 (ENSOTSG00005041599)	ENSOTSG00005041598	ENSOTSG00005041596	ltv1 (ENSOTSG00005041591)	capn9 (ENSOTSG00005039702)	taf5l (ENSOTSG00005039678)	nup133 (ENSOTSG00005037698)	ENSOTSG00005037696	si:ch211-214c7.5 (ENSOTSG00005037695)	map2k7 (ENSOTSG00005037481)	ENSOTSG00005037480	ENSOTSG00005037478	ENSOTSG00005037477	ENSOTSG00005037476	ENSOTSG00005037474 ##22	ENSOTSG00005037472 ##22	ENSOTSG00005037469	ENSOTSG00005037466	ENSOTSG00005037465	ENSOTSG00005037463	ENSOTSG00005037458	map2k7 (ENSOTSG00005037451)	si:ch211-214c7.5 (ENSOTSG00005037447)	ENSOTSG00005037446	nup133 (ENSOTSG00005036977)	taf5l (ENSOTSG00005036972)	capn9 (ENSOTSG00005035114)	ENSOTSG00005035110	ltv1 (ENSOTSG00005035109)	ENSOTSG00005035106
Coho salmon	MODERN SPECIES	12	ZNF207 (ENSOKIG00005026294)	RHBDL3 (ENSOKIG00005026227)	rhot1b (ENSOKIG00005026137)	ENSOKIG00005026109	ENSOKIG00005026039	ENSOKIG00005026012	suz12b (ENSOKIG00005024636)	utp6 (ENSOKIG00005024294)	rab11fip4b (ENSOKIG00005024044)	ENSOKIG00005024008	DDX39A (ENSOKIG00005023816)	DDX39A (ENSOKIG00005023763)	ENSOKIG00005023753	EVI5L (ENSOKIG00005023215) ##21	ENSOKIG00005023134	ENSOKIG00005023123 ##22	ENSOKIG00005023105	map2k7 (ENSOKIG00005022671)	PKN1 (ENSOKIG00005017942)	si:ch211-214c7.5 (ENSOKIG00005017754)	ENSOKIG00005017725	ENSOKIG00005017706	ltv1 (ENSOKIG00005017663)	capn9 (ENSOKIG00005016690)	taf5l (ENSOKIG00005016639)	nup133 (ENSOKIG00005015893)	ACTA1 (ENSOKIG00005015821)	CCSAP (ENSOKIG00005015809)	RHOU (ENSOKIG00005015802)	dla (ENSOKIG00005015721)	ENSOKIG00005015709
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000033915	suz12b (ENSOMYG00000033992)	UTP6 (ENSOMYG00000034695)	rab11fip4b (ENSOMYG00000034763)	ENSOMYG00000070820	ENSOMYG00000034929	ENSOMYG00000034940	ENSOMYG00000062226	ENSOMYG00000070546	ENSOMYG00000058938	ENSOMYG00000061423	ENSOMYG00000073169	ENSOMYG00000035064 ##21	ENSOMYG00000072551	ENSOMYG00000063602	ENSOMYG00000035254 ##22	ENSOMYG00000065797	ENSOMYG00000035262	LYG (ENSOMYG00000035259)	ENSOMYG00000063635	ENSOMYG00000035326	ENSOMYG00000035342	map2k7 (ENSOMYG00000035391)	ENSOMYG00000035430	si:ch211-214c7.5 (ENSOMYG00000035470)	ENSOMYG00000035497	ENSOMYG00000055970	ltv1 (ENSOMYG00000035505)	ENSOMYG00000035511	capn9 (ENSOMYG00000035711)	taf5l (ENSOMYG00000036888)
Salmo	ANCESTRAL SPECIES	89	ENSGT00940000157195.n.f	ENSGT00940000167317.c.b	ENSGT00530000069385.d.b	ENSGT00730000111057.d.d	ENSGT00940000158838.a	ENSGT00940000155641.g.b.f	ENSGT01030000234583.a.b.b.f.g	ENSGT00940000156498.g.b.c	ENSGT00390000010581.a	ENSGT00390000012364.b.c	ENSGT00390000016493.l	ENSGT00440000033742.a.b.c.a	ENSGT00940000165172.b.b	ENSGT00940000154912.v.e.b	ENSGT00940000153846.a.b.d ##21	ENSGT00940000156166.b.a.b.b ##22	ENSGT00390000017614.e.a.b	ENSGT00390000017614.e.a.a.b.a	ENSGT00390000017614.e.a.a.b.b	ENSGT00940000158914.b	ENSGT00940000154990.fb.a.k.a	ENSGT00390000009916.d	ENSGT00990000204616.a	ENSGT00980000199991	ENSGT00390000002789.j	ENSGT00940000158966.f	ENSGT00940000153342.b.gb	ENSGT00390000011529.i	ENSGT00940000156048.e.b.a.b.a	ENSGT00390000003512.r.c	ENSGT00940000156644.e.a.h
Atlantic salmon	MODERN SPECIES	11	septin9b (ENSSSAG00000039862)	ENSSSAG00000039279	ENSSSAG00000107216	ZNF207 (ENSSSAG00000039149)	ENSSSAG00000038485	rhot1b (ENSSSAG00000008086)	ENSSSAG00000007443	ENSSSAG00000007440	ENSSSAG00000082437	suz12b (ENSSSAG00000076684)	utp6 (ENSSSAG00000005694)	ENSSSAG00000112250	rab11fip4b (ENSSSAG00000005542)	DDX39 (ENSSSAG00000005515)	ENSSSAG00000004386 ##21	ENSSSAG00000121195 ##22	ENSSSAG00000096802	ENSSSAG00000086217	ENSSSAG00000004204	map2k7 (ENSSSAG00000117266)	ENSSSAG00000065025	si:ch211-214c7.5 (ENSSSAG00000064989)	ifngr1a (ENSSSAG00000064985)	ENSSSAG00000064981	ltv1 (ENSSSAG00000064974)	capn9 (ENSSSAG00000112435)	taf5l (ENSSSAG00000083268)	nup133 (ENSSSAG00000062572)	ACTA1 (ENSSSAG00000062181)	ENSSSAG00000091165	RHOU (ENSSSAG00000062117)
River trout	MODERN SPECIES	31	ENSSTUG00000046769	septin9b (ENSSTUG00000046786)	ENSSTUG00000046904	ENSSTUG00000047145	ZNF207 (ENSSTUG00000047149)	rhot1b (ENSSTUG00000047225)	ENSSTUG00000048355	ENSSTUG00000048379	tefm (ENSSTUG00000048438)	suz12b (ENSSTUG00000048514)	utp6 (ENSSTUG00000048980)	rab11fip4b (ENSSTUG00000049020)	ENSSTUG00000049061	DDX39A (ENSSTUG00000049071)	EVI5L (ENSSTUG00000049150) ##21	ENSSTUG00000049464 ##22	ENSSTUG00000049468	ENSSTUG00000049475	ENSSTUG00000049480	map2k7 (ENSSTUG00000049495)	PKN1 (ENSSTUG00000049633)	si:ch211-214c7.5 (ENSSTUG00000050671)	ENSSTUG00000050674	ltv1 (ENSSTUG00000050676)	ENSSTUG00000050678	capn9 (ENSSTUG00000050685)	taf5l (ENSSTUG00000050744)	nup133 (ENSSTUG00000050770)	ACTA1 (ENSSTUG00000050809)	CCSAP (ENSSTUG00000050810)	RHOU (ENSSTUG00000050811)
Northern pike	MODERN SPECIES	8	gga3a (ENSELUG00000006269)	ENSELUG00000006289	jpt1a (ENSELUG00000031046)	ENSELUG00000006345	ENSELUG00000006478	ADAP2 (ENSELUG00000006554)	tefm (ENSELUG00000006522)	atad5b (ENSELUG00000029348)	suz12b (ENSELUG00000006584)	utp6 (ENSELUG00000006618)	rab11fip4b (ENSELUG00000006705)	ENSELUG00000006729	DDX39A (ENSELUG00000006779)	EVI5L (ENSELUG00000006910) ##21	ENSELUG00000030302	ENSELUG00000006948 ##22	ENSELUG00000032480	ENSELUG00000028132	rhot1b (ENSELUG00000000243)	rhbdl3 (ENSELUG00000007113)	znf207b (ENSELUG00000007167)	ENSELUG00000007206	septin9b (ENSELUG00000007255)	ENSELUG00000030348	SMURF2 (ENSELUG00000007365)	CEP95 (ENSELUG00000007540)	DDX5 (ENSELUG00000007424)	POLG2 (ENSELUG00000007591)	srp68 (ENSELUG00000007653)	evpla (ENSELUG00000007680)	ENSELUG00000007704
Acanthomorphata	ANCESTRAL SPECIES	40	ENSGT00940000153578.A.f	ENSGT00390000017589	ENSGT00940000157287	ENSGT00940000159027	ENSGT00390000015579.a.a.a	ENSGT00940000160755	ENSGT00940000157864.a.a	ENSGT00940000155004.s	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00440000038745.a.a.a	ENSGT00530000063753.A.a
Cod	MODERN SPECIES	16	ENSGMOG00000027547	ENSGMOG00000024827	ENSGMOG00000026566	ENSGMOG00000032747	ENSGMOG00000023977	ENSGMOG00000024486	ENSGMOG00000013787	ENSGMOG00000018380	ENSGMOG00000030579	ENSGMOG00000017973	ENSGMOG00000034571	ENSGMOG00000014360	ENSGMOG00000014338	ENSGMOG00000014316	ENSGMOG00000014274 ##21	ENSGMOG00000014253 ##22	ENSGMOG00000014243	trappc5 (ENSGMOG00000014206)	mcoln1a (ENSGMOG00000014177)	ENSGMOG00000030599	ENSGMOG00000014108	map2k7 (ENSGMOG00000014079)	myh9a (ENSGMOG00000013979)	slc25a38b (ENSGMOG00000034482)	rpsa (ENSGMOG00000011219)	ttc26 (ENSGMOG00000013915)	ubn2a (ENSGMOG00000013888)	ENSGMOG00000013798	ENSGMOG00000008041	ENSGMOG00000008709	PIK3R6 (ENSGMOG00000017842)
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000153578.A.f	ENSGT00390000017589	ENSGT00940000157287	ENSGT00940000159027	ENSGT00390000015579.a.a.a	ENSGT00940000160755	ENSGT00940000157864.a.a	ENSGT00940000155004.s	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00440000038745.a.a.a	ENSGT00530000063753.A.a
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000170008.a	ENSGT00740000117013	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00390000000159	ENSGT00940000155858.f
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000018201	ENSHCOG00000018258	stx8 (ENSHCOG00000018268)	ENSHCOG00000018294	PIK3R5 (ENSHCOG00000018458)	ENSHCOG00000018472	PIK3R6 (ENSHCOG00000018481)	pik3r6a (ENSHCOG00000018499)	PRPSAP1 (ENSHCOG00000018541)	ENSHCOG00000018554	ENSHCOG00000018569	MGAT5B (ENSHCOG00000018642)	ENSHCOG00000018654	DDX39A (ENSHCOG00000018674)	EVI5L (ENSHCOG00000018919) ##21	ENSHCOG00000018951 ##22	lygl2 (ENSHCOG00000018965)	pglyrp2 (ENSHCOG00000018975)	mcoln1a (ENSHCOG00000019044)	ENSHCOG00000019078	si:ch211-214c7.5 (ENSHCOG00000019100)	ENSHCOG00000019118	PKN1 (ENSHCOG00000019190)	map2k7 (ENSHCOG00000019226)	myh9a (ENSHCOG00000019308)	ENSHCOG00000019341	slc25a38b (ENSHCOG00000019350)	ttc26 (ENSHCOG00000019425)	ubn2a (ENSHCOG00000019498)	ENSHCOG00000019593	ENSHCOG00000019606
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Carangaria	ANCESTRAL SPECIES		ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT01000000218899	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT01000000218899	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Barramundi perch	MODERN SPECIES	113	cfap52 (ENSLCAG00010024740)	ENSLCAG00010024727	ENSLCAG00010024721	stx8 (ENSLCAG00010024716)	ENSLCAG00010024705	PIK3R5 (ENSLCAG00010024665)	PIK3R6 (ENSLCAG00010024650)	pik3r6a (ENSLCAG00010024648)	prpsap1 (ENSLCAG00010024640)	ENSLCAG00010024632	MGAT5B (ENSLCAG00010024630)	ENSLCAG00010024628	ENSLCAG00010024622	DDX39A (ENSLCAG00010024582)	EVI5L (ENSLCAG00010024451) ##21	ENSLCAG00010024386 ##22	ENSLCAG00010024375	ENSLCAG00010024365	ENSLCAG00010024356	pglyrp2 (ENSLCAG00010024350)	trappc5 (ENSLCAG00010024342)	mcoln1a (ENSLCAG00010024335)	ENSLCAG00010024330	si:ch211-214c7.5 (ENSLCAG00010024319)	PKN1 (ENSLCAG00010024123)	map2k7 (ENSLCAG00010023967)	myh9a (ENSLCAG00010021928)	slc25a38b (ENSLCAG00010021433)	ENSLCAG00010021430	ttc26 (ENSLCAG00010021423)	ubn2a (ENSLCAG00010021412)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00940000169384	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000177045	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s
Zig-zag eel	MODERN SPECIES		ENSMAMG00000001334	PIK3R5 (ENSMAMG00000001297)	PIK3R6 (ENSMAMG00000001266)	ENSMAMG00000001241	ENSMAMG00000001202	ENSMAMG00000001194	ENSMAMG00000026536	ENSMAMG00000001140	ENSMAMG00000001095	ENSMAMG00000001044	ENSMAMG00000001071	ENSMAMG00000001085	ENSMAMG00000001010	ENSMAMG00000000971	ENSMAMG00000000812 ##21	ENSMAMG00000000785 ##22	ENSMAMG00000000758	ENSMAMG00000000747	trappc5 (ENSMAMG00000028068)	mcoln1a (ENSMAMG00000000655)	ENSMAMG00000000630	ENSMAMG00000000484	map2k7 (ENSMAMG00000000389)	myh9a (ENSMAMG00000017032)	SLC25A38 (ENSMAMG00000017013)	ENSMAMG00000017002	ttc26 (ENSMAMG00000016960)	ubn2a (ENSMAMG00000016946)	ENSMAMG00000016876	ENSMAMG00000016863	SPHK1 (ENSMAMG00000028412)
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000158772.a	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00940000169384	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s
Climbing perch	MODERN SPECIES		usp43a (ENSATEG00000003927)	cfap52 (ENSATEG00000003938)	ENSATEG00000004007	ENSATEG00000004045	ENSATEG00000004048	ENSATEG00000025504	PIK3R5 (ENSATEG00000004096)	PIK3R6 (ENSATEG00000004108)	ENSATEG00000027077	ENSATEG00000004142	ENSATEG00000027882	ENSATEG00000004204	ENSATEG00000028663	ENSATEG00000026992	ENSATEG00000004322 ##21	ENSATEG00000004396 ##22	ENSATEG00000028207	ENSATEG00000004412	ENSATEG00000028467	ENSATEG00000004471	ENSATEG00000004504	trappc5 (ENSATEG00000004561)	mcoln1a (ENSATEG00000004669)	ENSATEG00000004733	si:ch211-214c7.5 (ENSATEG00000026996)	ENSATEG00000004757	ENSATEG00000029268	myh9a (ENSATEG00000004883)	slc25a38b (ENSATEG00000005048)	ENSATEG00000005054	ttc26 (ENSATEG00000005064)
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000011849	ENSBSLG00000011814	ENSBSLG00000011663	PIK3R5 (ENSBSLG00000011605)	PIK3R6 (ENSBSLG00000011157)	pik3r6a (ENSBSLG00000011151)	prpsap1 (ENSBSLG00000011020)	ENSBSLG00000010923	MGAT5B (ENSBSLG00000010824)	ENSBSLG00000010817	ENSBSLG00000010813	ENSBSLG00000010802	ENSBSLG00000010773	ddx39aa (ENSBSLG00000010564)	EVI5L (ENSBSLG00000010248) ##21	ENSBSLG00000010230 ##22	lygl2 (ENSBSLG00000010226)	ENSBSLG00000010213	pglyrp2 (ENSBSLG00000010210)	trappc5 (ENSBSLG00000010205)	mcoln1a (ENSBSLG00000010119)	ENSBSLG00000010114	si:ch211-214c7.5 (ENSBSLG00000010103)	PKN1 (ENSBSLG00000009173)	map2k7 (ENSBSLG00000008768)	myh9a (ENSBSLG00000008626)	slc25a38b (ENSBSLG00000008610)	ENSBSLG00000008577	ttc26 (ENSBSLG00000008027)	ubn2a (ENSBSLG00000007576)	ENSBSLG00000005597
Eupercaria	ANCESTRAL SPECIES	2	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00990000203740.C	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00990000203740.C	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Ballan wrasse	MODERN SPECIES	716											ENSLBEG00000026047	ENSLBEG00000025785	DDX39A (ENSLBEG00000025618)	ENSLBEG00000025594	EVI5L (ENSLBEG00000025531) ##21	ENSLBEG00000025503 ##22	ENSLBEG00000025494	ENSLBEG00000025477	ENSLBEG00000025462	ENSLBEG00000025447
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C
Perciformes	ANCESTRAL SPECIES	2	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s
Perciformes_a	ANCESTRAL SPECIES		ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00990000203740.C	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s
Channel bull blenny	MODERN SPECIES		ENSCGOG00000006532	stx8 (ENSCGOG00000006538)	ENSCGOG00000006543	PIK3R5 (ENSCGOG00000006573)	PIK3R6 (ENSCGOG00000006582)	pik3r6a (ENSCGOG00000006587)	prpsap1 (ENSCGOG00000006592)	ENSCGOG00000006677	ENSCGOG00000006679	MGAT5B (ENSCGOG00000006683)	ENSCGOG00000006732	ENSCGOG00000006738	ENSCGOG00000006741	DDX39A (ENSCGOG00000006752)	EVI5L (ENSCGOG00000006884) ##21	ENSCGOG00000007125 ##22	ENSCGOG00000007127	ENSCGOG00000007146	pglyrp2 (ENSCGOG00000007393)	mcoln1a (ENSCGOG00000007404)	ENSCGOG00000008115	si:ch211-214c7.5 (ENSCGOG00000008121)	PKN1 (ENSCGOG00000008156)	map2k7 (ENSCGOG00000008591)	myh9a (ENSCGOG00000009004)	slc25a38b (ENSCGOG00000015008)	ENSCGOG00000015017	ttc26 (ENSCGOG00000015026)	ubn2a (ENSCGOG00000015282)	ENSCGOG00000015594	cygb2 (ENSCGOG00000023032)
Cottioidei	ANCESTRAL SPECIES	3	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C	ENSGT00940000155004.s	ENSGT00940000157864.a.a	ENSGT00940000160755
Lumpfish	MODERN SPECIES		cfap52 (ENSCLMG00005007651)	ENSCLMG00005007652	ENSCLMG00005007653	stx8 (ENSCLMG00005007654)	ENSCLMG00005007655	PIK3R5 (ENSCLMG00005007684)	PIK3R6 (ENSCLMG00005007705)	ENSCLMG00005007706	PRPSAP1 (ENSCLMG00005007710)	ENSCLMG00005007783	MGAT5B (ENSCLMG00005007784)	ENSCLMG00005007786	ENSCLMG00005007789	DDX39A (ENSCLMG00005007794)	EVI5L (ENSCLMG00005007905) ##21	ENSCLMG00005007921 ##22	ENSCLMG00005007922	pglyrp2 (ENSCLMG00005007924)	mcoln1a (ENSCLMG00005007950)	si:ch211-214c7.5 (ENSCLMG00005009396)	PKN1 (ENSCLMG00005009434)	map2k7 (ENSCLMG00005015839)	myh9a (ENSCLMG00005016021)	slc25a38b (ENSCLMG00005022910)	ENSCLMG00005022912	ttc26 (ENSCLMG00005022915)	ubn2a (ENSCLMG00005022922)	ENSCLMG00005022929	cygb2 (ENSCLMG00005022933)	SPHK1 (ENSCLMG00005022934)	UBE2O (ENSCLMG00005022937)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000158772.a	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f	ENSGT00390000017589
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00390000017614.e.a.e.b	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f
European seabass	MODERN SPECIES	20	ENSDLAG00005001844	PIK3R5 (ENSDLAG00005001818)	PIK3R6 (ENSDLAG00005001800)	ENSDLAG00005029435	ENSDLAG00005001621	ENSDLAG00005026888	ENSDLAG00005001421	ENSDLAG00005001365	ENSDLAG00005001359	ENSDLAG00005024565	ENSDLAG00005024431 ##21	ENSDLAG00005015380	ENSDLAG00005034838	ENSDLAG00005029691	ENSDLAG00005030658	ENSDLAG00005030621 ##22	ENSDLAG00005015356	ENSDLAG00005024396	mcoln1a (ENSDLAG00005024028)	ENSDLAG00005023998	si:ch211-214c7.5 (ENSDLAG00005023995)	ENSDLAG00005023678	map2k7 (ENSDLAG00005023630)	ENSDLAG00005022566	ENSDLAG00005026477	ENSDLAG00005032305	ENSDLAG00005004752	ENSDLAG00005026756	ENSDLAG00005032920	ENSDLAG00005033212	ENSDLAG00005020580
Large yellow croaker	MODERN SPECIES	481	rbm34 (ENSLCRG00005015231)	tbce (ENSLCRG00005015214)	NID1 (ENSLCRG00005015198)	ENSLCRG00005015194	ero1b (ENSLCRG00005014434)	ENSLCRG00005014412	gtpbp2b (ENSLCRG00005014409)	tp53bp2b (ENSLCRG00005014407)	rrp36 (ENSLCRG00005014405)	ENSLCRG00005014404	MGAT5B (ENSLCRG00005014397)	ENSLCRG00005014396	ENSLCRG00005014395	DDX39A (ENSLCRG00005014382)	EVI5L (ENSLCRG00005012983) ##21	ENSLCRG00005012978 ##22	g-lysozyme (ENSLCRG00005012977)	ENSLCRG00005012976	ENSLCRG00005012975	ENSLCRG00005012974	pglyrp2 (ENSLCRG00005012973)	trappc5 (ENSLCRG00005012967)	mcoln1a (ENSLCRG00005011086)	ENSLCRG00005011065	si:ch211-214c7.5 (ENSLCRG00005011064)	PKN1 (ENSLCRG00005010875)	map2k7 (ENSLCRG00005010593)	myh9a (ENSLCRG00005009088)	ENSLCRG00005009062	ENSLCRG00005009059	ENSLCRG00005009057
Gilthead seabream	MODERN SPECIES		ENSSAUG00010010201	ENSSAUG00010010205	stx8 (ENSSAUG00010010212)	ENSSAUG00010010214	PIK3R5 (ENSSAUG00010010217)	PIK3R6 (ENSSAUG00010010222)	pik3r6a (ENSSAUG00010010223)	PRPSAP1 (ENSSAUG00010010227)	ENSSAUG00010010289	MGAT5B (ENSSAUG00010010299)	ENSSAUG00010010309	ENSSAUG00010010311	ENSSAUG00010010312	DDX39A (ENSSAUG00010010316)	EVI5L (ENSSAUG00010010633) ##21	ENSSAUG00010012107 ##22	ENSSAUG00010012118	ENSSAUG00010012146	ENSSAUG00010012168	pglyrp2 (ENSSAUG00010012173)	trappc5 (ENSSAUG00010012187)	mcoln1a (ENSSAUG00010012221)	ENSSAUG00010013494	si:ch211-214c7.5 (ENSSAUG00010013495)	PKN1 (ENSSAUG00010013567)	map2k7 (ENSSAUG00010021200)	myh9a (ENSSAUG00010021322)	ENSSAUG00010024995	ENSSAUG00010024997	ENSSAUG00010025000	ENSSAUG00010025001
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00940000178527	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb
Oryzias	ANCESTRAL SPECIES	15									ENSGT00940000157476	ENSGT00950000182803.A.a.b.k.a.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT01000000218899	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155004.s
Oryzias_a	ANCESTRAL SPECIES	31							ENSGT00940000157476	ENSGT00950000182803.A.a.b.k.a.a	ENSGT00950000182803.A.a.b.k.a.b	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT01060000249897	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.q.a	ENSGT00940000163460.b.r	ENSGT01000000218899	ENSGT00940000163460.b.q.b	ENSGT00390000000159	ENSGT00940000155858.f
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000023055	ENSORLG00000030575	ENSORLG00000022228	ENSORLG00000026973	ENSORLG00000026274	ENSORLG00000000176	ENSORLG00000000198	ENSORLG00000000212	ENSORLG00000027194	ENSORLG00000023046	MGAT5B (ENSORLG00000030552)	ENSORLG00000000240	ENSORLG00000000279	EVI5L (ENSORLG00000000300) ##21	ENSORLG00000028813	ENSORLG00000024214 ##22	ENSORLG00000000313	ENSORLG00000000315	mcoln1a (ENSORLG00000000351)	ENSORLG00000029269	si:ch211-214c7.5 (ENSORLG00000000360)	ENSORLG00000000385	map2k7 (ENSORLG00000000408)	ENSORLG00000022891	ENSORLG00000000479	SLC25A38 (ENSORLG00000000507)	ENSORLG00000024359	ENSORLG00000030087	ENSORLG00000024161	ENSORLG00000000518	ttc26 (ENSORLG00000019955)
Chinese medaka	MODERN SPECIES	48							PRPSAP1 (ENSOSIG00000005217)	ENSOSIG00000005225	prpsap1 (ENSOSIG00000005478)	ENSOSIG00000005480	MGAT5B (ENSOSIG00000005481)	ENSOSIG00000005483	DDX39A (ENSOSIG00000005486)	EVI5L (ENSOSIG00000005593) ##21	ENSOSIG00000005613	ENSOSIG00000005616 ##22	ENSOSIG00000005619	ENSOSIG00000005622	mcoln1a (ENSOSIG00000005641)	ENSOSIG00000005791	si:ch211-214c7.5 (ENSOSIG00000005795)	ENSOSIG00000005802	ENSOSIG00000005806	map2k7 (ENSOSIG00000005811)	slc25a38b (ENSOSIG00000011239)	ENSOSIG00000011242	ENSOSIG00000011244	ENSOSIG00000011245	ENSOSIG00000011249	ENSOSIG00000011253	ttc26 (ENSOSIG00000011258)
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00940000158772.a	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000172399	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p.h	ENSGT00550000075117.m.a	ENSGT00940000163460.b	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155004.s
Turquoise killifish	MODERN SPECIES	1617	zdhhc5a (ENSNFUG00015017074)	TMX2B (ENSNFUG00015017095)	DPH3 (ENSNFUG00015017097)	ENSNFUG00015017108	TESK1 (ENSNFUG00015017123)	ENSNFUG00015017134	ENSNFUG00015017139	Nfu_g_1_013741 (ENSNFUG00015017143)	ENSNFUG00015007008	PKN1 (ENSNFUG00015007241)	si:ch211-214c7.5 (ENSNFUG00015011746)	ENSNFUG00015011764	MCOLN1 (ENSNFUG00015011870)	TRAPPC5 (ENSNFUG00015012750)	EVI5L (ENSNFUG00015012801) ##21	ENSNFUG00015013383 ##22	DDX39AA (ENSNFUG00015013401)	Nfu_g_1_013830 (ENSNFUG00015013424)	MGAT5B (ENSNFUG00015013432)	PIK3R6 (ENSNFUG00015013465)	PIK3R5 (ENSNFUG00015013523)	ENSNFUG00015013686	STX8 (ENSNFUG00015013791)	ENSNFUG00015013810	cfap52 (ENSNFUG00015013875)	usp43a (ENSNFUG00015014716)	ENSNFUG00015014796	MCHR1 (ENSNFUG00015014826)	GGA3 (ENSNFUG00015014950)	ENSNFUG00015016539	HN1A (ENSNFUG00015016552)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000157016.d	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000161510.v.a
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000157016.d	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000161510.v.a
NAME_6	ANCESTRAL SPECIES	207	ENSGT00940000157016.d	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00740000117013.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.e.a.e	ENSGT00390000017614.e.a.e.a.f	ENSGT00940000158718.a.a	ENSGT00950000183036.b.e	ENSGT01030000234900
Amazon molly	MODERN SPECIES	492	ENSPFOG00000002766	ENSPFOG00000002625	stx8 (ENSPFOG00000002516)	ENSPFOG00000002430	PIK3R5 (ENSPFOG00000002198)	PIK3R6 (ENSPFOG00000001996)	pik3r6a (ENSPFOG00000001881)	ENSPFOG00000024100	PRPSAP1 (ENSPFOG00000001763)	ENSPFOG00000020516	ENSPFOG00000001728	MGAT5B (ENSPFOG00000001279)	ENSPFOG00000001004	DDX39A (ENSPFOG00000000914)	EVI5L (ENSPFOG00000000681) ##21	ENSPFOG00000024581 ##22	ENSPFOG00000000585	ENSPFOG00000000572	pglyrp2 (ENSPFOG00000000537)	mcoln1a (ENSPFOG00000000348)	ENSPFOG00000023953
Platyfish	MODERN SPECIES	19	cfap52 (ENSXMAG00000026073)	ENSXMAG00000022952	ENSXMAG00000005229	stx8 (ENSXMAG00000005222)	ENSXMAG00000006621	ENSXMAG00000028650	PIK3R5 (ENSXMAG00000006605)	PIK3R6 (ENSXMAG00000006596)	pik3r6a (ENSXMAG00000006583)	prpsap1 (ENSXMAG00000013006)	ENSXMAG00000021609	MGAT5B (ENSXMAG00000006566)	ENSXMAG00000006561	DDX39A (ENSXMAG00000006547)	EVI5L (ENSXMAG00000006528) ##21	ENSXMAG00000006527 ##22	lygl2 (ENSXMAG00000022522)	pglyrp2 (ENSXMAG00000006509)	ENSXMAG00000026659	mcoln1a (ENSXMAG00000006478)	ENSXMAG00000021625	si:ch211-214c7.5 (ENSXMAG00000006473)	PKN1 (ENSXMAG00000006429)	map2k7 (ENSXMAG00000006412)	myh9a (ENSXMAG00000006407)	slc25a38b (ENSXMAG00000006405)	ENSXMAG00000022667	ttc26 (ENSXMAG00000006376)	ubn2a (ENSXMAG00000020944)	ENSXMAG00000006162	cygb2 (ENSXMAG00000006158)
NAME_4	ANCESTRAL SPECIES	248													ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00390000017614.e.a.f	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a.f	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00940000154990.fb.a.f	ENSGT00390000009916	ENSGT00940000154990.fb.a.e	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C
Mummichog	MODERN SPECIES	2487													ENSFHEG00000002624	DDX39A (ENSFHEG00000002643)	EVI5L (ENSFHEG00000002725) ##21	ENSFHEG00000002747 ##22	lygl2 (ENSFHEG00000002770)	pglyrp2 (ENSFHEG00000002780)	mcoln1a (ENSFHEG00000002806)	ENSFHEG00000002815	si:ch211-214c7.5 (ENSFHEG00000002821)	PKN1 (ENSFHEG00000002855)	map2k7 (ENSFHEG00000002882)	myh9a (ENSFHEG00000002933)	slc25a38b (ENSFHEG00000002946)	rpz (ENSFHEG00000002950)	rpz6 (ENSFHEG00000002959)	rpz5 (ENSFHEG00000002968)	rpz4 (ENSFHEG00000002974)	ENSFHEG00000002987	ENSFHEG00000003001
Sheepshead minnow	MODERN SPECIES	1408															EVI5L (ENSCVAG00000020388) ##21	ENSCVAG00000020396 ##22	lygl2 (ENSCVAG00000020878)	pglyrp2 (ENSCVAG00000020893)	mcoln1a (ENSCVAG00000020970)	ENSCVAG00000020979	ENSCVAG00000020994
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000163460.b	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000172399	ENSGT00390000017614.e.a.e.a	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00990000203740.C	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.x	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a
Midas cichlid	MODERN SPECIES	1179	MCHR1 (ENSACIG00000008598)	usp43a (ENSACIG00000008562)	cfap52 (ENSACIG00000008493)	ENSACIG00000008474	ENSACIG00000008420	ENSACIG00000008400	ENSACIG00000008373	PIK3R5 (ENSACIG00000008265)	pik3r6a (ENSACIG00000008249)	prpsap1 (ENSACIG00000008222)	ENSACIG00000008211	MGAT5B (ENSACIG00000008175)	ENSACIG00000008008	DDX39A (ENSACIG00000007948)	EVI5L (ENSACIG00000007906) ##21	ENSACIG00000007893 ##22	pglyrp2 (ENSACIG00000007884)	trappc5 (ENSACIG00000007877)	mcoln1a (ENSACIG00000007835)	ENSACIG00000007831 ##26	PKN1 (ENSACIG00000007792)	map2k7 (ENSACIG00000007756)	myh9a (ENSACIG00000007669)	slc25a38b (ENSACIG00000007595)	ttc26 (ENSACIG00000007564)	ubn2a (ENSACIG00000007485)	ENSACIG00000007390	cygb2 (ENSACIG00000007374)	SPHK1 (ENSACIG00000007340)	UBE2O (ENSACIG00000007302)	aanat1 (ENSACIG00000007287)
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.x	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.x	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a
Lyretail cichlid	MODERN SPECIES	301	MCHR1 (ENSNBRG00000000674)	ENSNBRG00000000699	ENSNBRG00000000708	ENSNBRG00000000745	stx8 (ENSNBRG00000000802)	ENSNBRG00000000807	PIK3R5 (ENSNBRG00000000824)	ENSNBRG00000001019	pik3r6a (ENSNBRG00000001037)	prpsap1 (ENSNBRG00000001062)	ENSNBRG00000001118	MGAT5B (ENSNBRG00000001128)	ENSNBRG00000001240	DDX39A (ENSNBRG00000001661)	EVI5L (ENSNBRG00000001702) ##21	ENSNBRG00000001834 ##22	pglyrp2 (ENSNBRG00000001844)	trappc5 (ENSNBRG00000001858)	mcoln1a (ENSNBRG00000001873)	ENSNBRG00000001909	PKN1 (ENSNBRG00000001924)	map2k7 (ENSNBRG00000001980)	myh9a (ENSNBRG00000002041)	slc25a38b (ENSNBRG00000002172)	ttc26 (ENSNBRG00000002205)	ubn2a (ENSNBRG00000002266)	ENSNBRG00000002329	cygb2 (ENSNBRG00000002464)	SPHK1 (ENSNBRG00000002489)	UBE2O (ENSNBRG00000002538)	aanat1 (ENSNBRG00000002600)
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000157016	ENSGT00940000156207.b.c.b	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.x	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a
Burton s mouthbrooder	MODERN SPECIES	440				ENSHBUG00000003985	ENSHBUG00000003954	ENSHBUG00000003942	PIK3R5 (ENSHBUG00000003913)	ENSHBUG00000003880	pik3r6a (ENSHBUG00000003862)	prpsap1 (ENSHBUG00000003847)	ENSHBUG00000003805	MGAT5B (ENSHBUG00000003797)	ENSHBUG00000003754	DDX39A (ENSHBUG00000003748)	EVI5L (ENSHBUG00000003723) ##21	ENSHBUG00000003653 ##22	pglyrp2 (ENSHBUG00000003649)	trappc5 (ENSHBUG00000003641)	mcoln1a (ENSHBUG00000003638)	ENSHBUG00000003623	si:ch211-214c7.5 (ENSHBUG00000003613)	PKN1 (ENSHBUG00000003598)	map2k7 (ENSHBUG00000003473)	myh9a (ENSHBUG00000003422)	slc25a38b (ENSHBUG00000003348)	ttc26 (ENSHBUG00000003321)	ubn2a (ENSHBUG00000003249)	ENSHBUG00000003172	cygb2 (ENSHBUG00000003087)	SPHK1 (ENSHBUG00000003072)	UBE2O (ENSHBUG00000003061)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00940000178527	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00940000163460.b.x	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a
P. nyererei	MODERN SPECIES	363	cfap52 (ENSPNYG00000015896)	ENSPNYG00000015933	ENSPNYG00000015941	stx8 (ENSPNYG00000015982)	ENSPNYG00000016002	PIK3R5 (ENSPNYG00000016063)	ENSPNYG00000016238	PIK3R6 (ENSPNYG00000016258)	pik3r6a (ENSPNYG00000016279)	prpsap1 (ENSPNYG00000016308)	ENSPNYG00000016378	MGAT5B (ENSPNYG00000016389)	ENSPNYG00000016426	DDX39A (ENSPNYG00000016438)	EVI5L (ENSPNYG00000016470) ##21	ENSPNYG00000016515 ##22	pglyrp2 (ENSPNYG00000016527)	trappc5 (ENSPNYG00000016546)	mcoln1a (ENSPNYG00000016561)	ENSPNYG00000016592	si:ch211-214c7.5 (ENSPNYG00000016604)	PKN1 (ENSPNYG00000016636)	map2k7 (ENSPNYG00000016736)	myh9a (ENSPNYG00000016788)	slc25a38b (ENSPNYG00000016863)	ENSPNYG00000016880	ttc26 (ENSPNYG00000016899)	ubn2a (ENSPNYG00000016949)	ENSPNYG00000017010	cygb2 (ENSPNYG00000017139)	SPHK1 (ENSPNYG00000017177)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000158772.a	ENSGT00940000157016	ENSGT01100000263505.b.b.a.b.a.a.a.b.b.a	ENSGT00410000025739.c.b	ENSGT00390000007779	ENSGT00940000153882.a.a	ENSGT00530000063753.B.c	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00950000182803.A.a.b.k.a	ENSGT00940000163566.a.b.a.a	ENSGT00940000153470.a.b.b.m.a	ENSGT00940000165172.b	ENSGT00940000154912.u.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158718.a.a	ENSGT00390000000976.d.a	ENSGT00950000183036.b.e	ENSGT01030000234900	ENSGT00390000009916	ENSGT00940000154990.fb.a	ENSGT00940000158914	ENSGT00940000155632.p	ENSGT00550000075117.m.a	ENSGT00390000000159	ENSGT00940000155858.f	ENSGT00940000155159.C.nb	ENSGT00940000155004.s	ENSGT00940000157864.a.a	ENSGT00940000160755
Eastern happy	MODERN SPECIES	18	usp43a (ENSACLG00000006255)	cfap52 (ENSACLG00000006235)	ENSACLG00000006230	ENSACLG00000006207	stx8 (ENSACLG00000006188)	ENSACLG00000006165	PIK3R5 (ENSACLG00000006089)	PIK3R6 (ENSACLG00000006039)	pik3r6a (ENSACLG00000006030)	PRPSAP1 (ENSACLG00000005989)	ENSACLG00000005453	MGAT5B (ENSACLG00000005397)	ENSACLG00000004964	DDX39A (ENSACLG00000004945)	EVI5L (ENSACLG00000004832) ##21	ENSACLG00000004798 ##22	pglyrp2 (ENSACLG00000004791)	trappc5 (ENSACLG00000004779)	mcoln1a (ENSACLG00000004699)	ENSACLG00000004677	si:ch211-214c7.5 (ENSACLG00000004642)	PKN1 (ENSACLG00000004467)	map2k7 (ENSACLG00000004319)	myh9a (ENSACLG00000004210)	slc25a38b (ENSACLG00000004171)	ttc26 (ENSACLG00000004122)	ubn2a (ENSACLG00000004028)	ENSACLG00000003952	cygb2 (ENSACLG00000003941)	SPHK1 (ENSACLG00000003583)	UBE2O (ENSACLG00000003484)
Zebra mbuna	MODERN SPECIES	1109	cfap52 (ENSMZEG00005023918)	ENSMZEG00005023919	ENSMZEG00005023920	ENSMZEG00005023921	ENSMZEG00005023922	ENSMZEG00005023923	PIK3R5 (ENSMZEG00005023924)	PIK3R6 (ENSMZEG00005023925)	pik3r6a (ENSMZEG00005023926)	PRPSAP1 (ENSMZEG00005023928)	ENSMZEG00005023931	MGAT5B (ENSMZEG00005023932)	ENSMZEG00005023934	DDX39A (ENSMZEG00005023935)	EVI5L (ENSMZEG00005023936) ##21	ENSMZEG00005000065 ##22	pglyrp2 (ENSMZEG00005000079)	trappc5 (ENSMZEG00005000086)	mcoln1a (ENSMZEG00005000112)	ENSMZEG00005000130	ENSMZEG00005000155	PKN1 (ENSMZEG00005000190)	map2k7 (ENSMZEG00005000337)	myh9a (ENSMZEG00005000404)	slc25a38b (ENSMZEG00005000578)	ttc26 (ENSMZEG00005000603)	ubn2a (ENSMZEG00005000718)	ENSMZEG00005000820	cygb2 (ENSMZEG00005000988)	SPHK1 (ENSMZEG00005001010)	UBE2O (ENSMZEG00005001025)
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000156166.b.a.b ##22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000156166.b.a.b ##22
Denticle herring	MODERN SPECIES	13	ENSDCDG00000028083	ENSDCDG00000028085	cct4 (ENSDCDG00000028087)	pus10 (ENSDCDG00000028091)	ENSDCDG00000028109	ENSDCDG00000028163	ltv1 (ENSDCDG00000028165)	ENSDCDG00000028167	capn9 (ENSDCDG00000028177)	ENSDCDG00000028337	ENSDCDG00000028344	tmem264 (ENSDCDG00000028740)	rrp36 (ENSDCDG00000028743)	sipa1l2 (ENSDCDG00000013867)	egln1b (ENSDCDG00000013919)	ENSDCDG00000013951 ##22	ENSDCDG00000013976	emp1 (ENSDCDG00000014002)	f8a (ENSDCDG00000014039)	ENSDCDG00000014171	si:ch211-243a20.3 (ENSDCDG00000014187)	grin2bb (ENSDCDG00000014226)	ENSDCDG00000014384	atf7ip (ENSDCDG00000014391)	septin3 (ENSDCDG00000014488)	ENSDCDG00000017639	serhl (ENSDCDG00000017641)	actr2a (ENSDCDG00000017653)	SPRED2 (ENSDCDG00000017675)	ENSDCDG00000017698	etaa1a (ENSDCDG00000017778)
Osteoglossiformes	ANCESTRAL SPECIES	70	ENSGT00940000157016	ENSGT00390000007779	ENSGT00940000153882.a.b.a	ENSGT00530000063753.B	ENSGT00530000063753.A.a	ENSGT00440000038745.a.a.a	ENSGT00940000155159.C.cb	ENSGT00940000155858.f	ENSGT00390000000159	ENSGT00950000183099	ENSGT00550000075117.m.a	ENSGT00940000155632.p	ENSGT00530000064086.t	ENSGT00940000154912.s	ENSGT00940000153846.a.b.a.a ##21	ENSGT00940000156166.b.a.b ##22	ENSGT00940000158914	ENSGT00940000154990.db	ENSGT00390000009916	ENSGT00940000154382.a.a.a.a ##26	ENSGT00950000183036.b.e	ENSGT00940000158718.a.a	ENSGT00940000165433	ENSGT00940000159979.a.b	ENSGT01030000234559.a.a.b.a.a.a.o	ENSGT00940000156719.r	ENSGT00940000158178.b.b	ENSGT00940000153116.C.b	ENSGT00940000165438.a.a	ENSGT00940000164623.A	ENSGT00940000163957.e.b
P. kingsleyae	MODERN SPECIES	45	stx8 (ENSPKIG00000006210)	ENSPKIG00000006232	PIK3R5 (ENSPKIG00000006271)	PIK3R6 (ENSPKIG00000006340)	pik3r6a (ENSPKIG00000006377)	MYH10 (ENSPKIG00000006467)	ubn2a (ENSPKIG00000006635)	ttc26 (ENSPKIG00000006719)	rpsa (ENSPKIG00000006794)	slc25a38b (ENSPKIG00000006855)	myh9a (ENSPKIG00000006993)	txn2 (ENSPKIG00000007230)	ENSPKIG00000007248	DDX39A (ENSPKIG00000007272)	EVI5L (ENSPKIG00000007361) ##21	ENSPKIG00000007523 ##22	map2k7 (ENSPKIG00000007567)	PKN1 (ENSPKIG00000007682)	si:ch211-214c7.5 (ENSPKIG00000007799)	ENSPKIG00000007827 ##26	mcoln1a (ENSPKIG00000007851)	pglyrp2 (ENSPKIG00000008006)	ENSPKIG00000008188	WIZ (ENSPKIG00000008281)	ptger1a (ENSPKIG00000008380)	ENSPKIG00000008409	ENSPKIG00000008436	acp5a (ENSPKIG00000008444)	SLC44A2 (ENSPKIG00000008518)	odad3 (ENSPKIG00000008735)	ENSPKIG00000008774
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Otophysi	ANCESTRAL SPECIES	25													ENSGT00940000165172.b	ENSGT00940000154912.v.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00940000163253.a.a.a	ENSGT00990000208598	ENSGT00950000182696.A.a.b	ENSGT00390000016992	ENSGT00940000182090	ENSGT00410000026495.B	ENSGT00940000155964.h	ENSGT00530000063707.a	ENSGT00940000158004	ENSGT01090000260360	ENSGT00530000063960	ENSGT00390000000976	ENSGT00950000183036.b.e	ENSGT00940000154382.a.a.l ##26	ENSGT00390000009916
Characiphysae	ANCESTRAL SPECIES	9													ENSGT00940000165172.b	ENSGT00940000154912.v.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00940000161324	ENSGT00950000182696.A.a.b	ENSGT00390000016992	ENSGT00940000182090	ENSGT00410000026495.B	ENSGT00940000155964.h	ENSGT00530000063707.a	ENSGT00940000158004	ENSGT01090000260360	ENSGT00530000063960	ENSGT00390000000976	ENSGT00950000183036.b.e	ENSGT00940000154382.a.a.l ##26	ENSGT00390000009916	ENSGT00940000154990.fb.a
Channel catfish	MODERN SPECIES	18	raph1b (ENSIPUG00000021730)	pld6 (ENSIPUG00000021722)	rab3da (ENSIPUG00000021705)	ENSIPUG00000021698	ENSIPUG00000021691	tap2a (ENSIPUG00000021683)	psmb13a (ENSIPUG00000021665)	psmb8a (ENSIPUG00000021646)	psmb8a (ENSIPUG00000021632)	psmb12 (ENSIPUG00000021610)	psmb9a (ENSIPUG00000021600)	tap2a (ENSIPUG00000021586)	ENSIPUG00000021583	ddx39aa (ENSIPUG00000021552)	EVI5L (ENSIPUG00000021462) ##21	ENSIPUG00000021453 ##22	ENSIPUG00000021443	EMP2 (ENSIPUG00000021435)	f8a (ENSIPUG00000021405)	si:ch211-243a20.3 (ENSIPUG00000021403)	grin2bb (ENSIPUG00000021387)	atf7ip (ENSIPUG00000021356)	septin3 (ENSIPUG00000021317)	serhl2 (ENSIPUG00000021298)	Trappc5 (ENSIPUG00000021287)	mcoln1 (ENSIPUG00000021228)	ENSIPUG00000021220	c26h19orf67 (ENSIPUG00000021206)	PKN1 (ENSIPUG00000021130)	map2k7 (ENSIPUG00000021102)	PNPLA6 (ENSIPUG00000020961)
Characiphysae_b	ANCESTRAL SPECIES	117													ENSGT00940000165172.b	ENSGT00940000154912.v.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00940000161324	ENSGT00950000182696.A.a.b	ENSGT00390000016992	ENSGT00940000182090	ENSGT00410000026495.B	ENSGT00940000155964.h	ENSGT00530000063707.a	ENSGT00940000158004	ENSGT01090000260360	ENSGT00530000063960	ENSGT00390000000976	ENSGT00950000183036.b.e	ENSGT00940000154382.a.a.l ##26	ENSGT00390000009916	ENSGT00940000154990.fb.a
Characoidei	ANCESTRAL SPECIES	292													ENSGT00940000165172.b	ENSGT00940000154912.v.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00940000161324	ENSGT00950000182696.A.a.b	ENSGT00390000016992	ENSGT00940000182090	ENSGT00410000026495.B	ENSGT00940000155964.h	ENSGT00530000063707.a	ENSGT00940000158004	ENSGT01090000260360
Red-bellied piranha	MODERN SPECIES	59						PRKX (ENSPNAG00000022419)	nlgn4xa (ENSPNAG00000022462)	pudp (ENSPNAG00000022487)	ENSPNAG00000022494	STS (ENSPNAG00000022506)	anos1a (ENSPNAG00000022580)	slc11a2 (ENSPNAG00000022587)	ENSPNAG00000022598	ddx39aa (ENSPNAG00000022623)	EVI5L (ENSPNAG00000005991) ##21	ENSPNAG00000022698 ##22	ENSPNAG00000022727	emp1 (ENSPNAG00000022738)	f8a (ENSPNAG00000022803)	ENSPNAG00000022818	si:ch211-243a20.3 (ENSPNAG00000022833)	grin2bb (ENSPNAG00000006351)	atf7ip (ENSPNAG00000022959)	septin3 (ENSPNAG00000023001)	ENSPNAG00000005587	serhl (ENSPNAG00000003752)	serhl (ENSPNAG00000006650)	trappc5 (ENSPNAG00000023084)	mcoln1a (ENSPNAG00000023123)	ENSPNAG00000023144 ##26	si:ch211-214c7.5 (ENSPNAG00000023282)
Mexicana tetra	MODERN SPECIES	3	PNPLA6 (ENSAMXG00000018423)	map2k7 (ENSAMXG00000018484)	PKN1 (ENSAMXG00000018504)	si:ch211-214c7.5 (ENSAMXG00000018514)	ENSAMXG00000018526 ##26	mcoln1a (ENSAMXG00000018550)	trappc5 (ENSAMXG00000041497)	ENSAMXG00000039354	ENSAMXG00000032316	inab (ENSAMXG00000018601)	ENSAMXG00000018610	ENSAMXG00000038204	ENSAMXG00000035284	ddx39aa (ENSAMXG00000015256)	EVI5L (ENSAMXG00000018638) ##21	ENSAMXG00000018641 ##22	ENSAMXG00000018646	emp1 (ENSAMXG00000037610)	f8a (ENSAMXG00000038777)	si:ch211-243a20.3 (ENSAMXG00000037723)	grin2bb (ENSAMXG00000018685)	ENSAMXG00000031064	nlgn4xa (ENSAMXG00000018861)	pudp (ENSAMXG00000034340)	ENSAMXG00000036752	ENSAMXG00000018854	STS (ENSAMXG00000018847)	anos1a (ENSAMXG00000036974)	slc2a15b (ENSAMXG00000018822)	fgf8b (ENSAMXG00000034931)	dpcd (ENSAMXG00000018795)
Electric eel	MODERN SPECIES	228		ENSEEEG00000021608	CASQ2 (ENSEEEG00000021604)	VANGL1 (ENSEEEG00000021602)	ENSEEEG00000021601	ENSEEEG00000021600	ENSEEEG00000021586	ENSEEEG00000021439	RDX (ENSEEEG00000019891)	ENSEEEG00000019835	ENSEEEG00000019833	ENSEEEG00000019831	ddx39aa (ENSEEEG00000019812)	EVI5L (ENSEEEG00000019811) ##21	ENSEEEG00000019810	ENSEEEG00000019809 ##22	emp1 (ENSEEEG00000019808)	f8a (ENSEEEG00000019789)	si:ch211-243a20.3 (ENSEEEG00000019784)	grin2bb (ENSEEEG00000019783)	atf7ip (ENSEEEG00000019779)	septin3 (ENSEEEG00000019618)	ENSEEEG00000019601	serhl (ENSEEEG00000019599)	trappc5 (ENSEEEG00000019598)	mcoln1a (ENSEEEG00000019561)	ENSEEEG00000019556 ##26	si:ch211-214c7.5 (ENSEEEG00000019555)	PKN1 (ENSEEEG00000019544)	map2k7 (ENSEEEG00000019536)	PNPLA6 (ENSEEEG00000019505)
Cyprinoidei	ANCESTRAL SPECIES	5						ENSGT00940000153558	ENSGT00940000155007.n.b	ENSGT00390000009819.a.a	ENSGT00940000177191	ENSGT00530000063926.a	ENSGT00940000165823	ENSGT00390000008711.h	ENSGT00950000184120	ENSGT00940000154912.v.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00940000161324	ENSGT00940000163253.a.a.a	ENSGT00990000208598	ENSGT00950000182696.A.a.b	ENSGT00390000016992	ENSGT00940000182090	ENSGT00410000026495.B	ENSGT00940000155964.h	ENSGT00530000063707.a	ENSGT00940000158004	ENSGT01090000260360	ENSGT00530000063960	ENSGT00390000000976	ENSGT00950000183036.b.e	ENSGT00940000154382.a.a.l ##26
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	291							ENSGT00940000157122.b.a.n.a	ENSGT00940000153558.d	ENSGT00940000155007.n.b.c	ENSGT00390000009819.a.a.ac.b	ENSGT00940000165823.b	ENSGT00390000008711.h.d	ENSGT00950000184120.b	ENSGT00940000154912.v.b.b	ENSGT00940000153846.a.b.g ##21	ENSGT00940000156166.b.b.a.a ##22	ENSGT00950000182696.A.a.b.b	ENSGT00390000016992.a	ENSGT00940000182090	ENSGT00410000026495.B.h	ENSGT00940000155964.h.a	ENSGT00530000063707.a.h	ENSGT00940000158004.o	ENSGT01090000260360	ENSGT00530000063960.c	ENSGT00390000000976.f.a	ENSGT00950000183036.b.e.e	ENSGT00940000154382.a.a.l.b ##26	ENSGT00390000009916	ENSGT00940000154990.fb.a.b	ENSGT00940000158914.c
Cyprininae_a	ANCESTRAL SPECIES	76	ENSGT00940000156223.bb.a.a	ENSGT00940000157511.w.a	ENSGT00940000159443.i	ENSGT00530000063713.b.a.l	ENSGT00940000160184.c.b.d	ENSGT00390000017452.e	ENSGT00940000157122.b.a.n.a	ENSGT00940000153558.d	ENSGT00940000155007.n.b.c	ENSGT00390000009819.a.a.ac.b	ENSGT00940000165823.b	ENSGT00390000008711.h.d	ENSGT00950000184120.b	ENSGT00940000154912.v.b.b	ENSGT00940000153846.a.b.g ##21	ENSGT00940000156166.b.b.a.a ##22	ENSGT00950000182696.A.a.b.b	ENSGT00390000016992.a	ENSGT00940000182090	ENSGT00410000026495.B.h	ENSGT00940000155964.h.a	ENSGT00530000063707.a.h	ENSGT00940000158004.o	ENSGT00530000063960.c	ENSGT00390000000976.f.a	ENSGT00950000183036.b.e.e	ENSGT00940000154382.a.a.l.b ##26	ENSGT00390000009916	ENSGT00940000154990.fb.a.b	ENSGT00940000158914.c	ENSGT00940000159130.b
Common carp reference	MODERN SPECIES	27	ENSCCRG00000036099	ENSCCRG00000044555	smox (ENSCCRG00000044542)	rnf24 (ENSCCRG00000077886)	ENSCCRG00000044144	ENSCCRG00000064028	mogs (ENSCCRG00000044133)	ENSCCRG00000012614	dnaja1 (ENSCCRG00000076534)	ENSCCRG00000012289	rps6 (ENSCCRG00000012297)	ENSCCRG00000012309	ENSCCRG00000021832	ddx39aa (ENSCCRG00000058678)	ENSCCRG00000007140 ##21	ENSCCRG00000016049 ##22	emp1 (ENSCCRG00000066516)	f8a (ENSCCRG00000041161)	si:ch211-243a20.3 (ENSCCRG00000058643)	ENSCCRG00000080533	grin2bb (ENSCCRG00000079098)	atf7ip (ENSCCRG00000052388)	septin3 (ENSCCRG00000041260)	serhl (ENSCCRG00000041291)	trappc5 (ENSCCRG00000052406)	mcoln1a (ENSCCRG00000041335)	si:ch211-214c7.5 (ENSCCRG00000079126)	ENSCCRG00000000627 ##26	ENSCCRG00000057692	map2k7 (ENSCCRG00000034605)	ENSCCRG00000022089
Goldfish	MODERN SPECIES	3109						ENSCARG00000069896	dnaja1 (ENSCARG00000069894)	ENSCARG00000069891	rps6 (ENSCARG00000069889)	ENSCARG00000069885	ENSCARG00000069881	ENSCARG00000069879	ENSCARG00000069878	ddx39aa (ENSCARG00000069876)	EVI5L (ENSCARG00000069773) ##21	ENSCARG00000069748 ##22	emp1 (ENSCARG00000069743)	f8a (ENSCARG00000069729)	si:ch211-243a20.3 (ENSCARG00000069721)	grin2bb (ENSCARG00000069711)	atf7ip (ENSCARG00000069708)	septin3 (ENSCARG00000069668)	ENSCARG00000069660	trappc5 (ENSCARG00000069659)	mcoln1a (ENSCARG00000069589)	serhl (ENSCARG00000069568)	ENSCARG00000069566 ##26	si:ch211-214c7.5 (ENSCARG00000069563)	PKN1 (ENSCARG00000068277)	map2k7 (ENSCARG00000068061)	ENSCARG00000068056
Cyprininae	ANCESTRAL SPECIES	38				ENSGT00940000157122.b.a.n.b	ENSGT00940000153558.c	ENSGT00940000155007.n.b.d	ENSGT00390000009819.a.a.ac.a	ENSGT00940000177191	ENSGT00390000009819.a.a.`c	ENSGT00530000063926.a	ENSGT00940000165823.a	ENSGT00390000008711.h.c	ENSGT00950000184120.a	ENSGT00940000154912.v.b.a	ENSGT00940000153846.a.b.h ##21	ENSGT00940000156166.b.b.a.b ##22	ENSGT00940000163253.a.a.a	ENSGT00990000208598	ENSGT00950000182696.A.a.b.a	ENSGT00390000016992.b	ENSGT00410000026495.B.g	ENSGT00940000155964.h.b	ENSGT00530000063707.a.g	ENSGT00940000158004.p	ENSGT00530000063960.d	ENSGT00390000000976.f.b	ENSGT00950000183036.b.e.f	ENSGT00940000154382.a.a.l.a ##26	ENSGT00940000154990.fb.a.a	ENSGT00940000158914.d	ENSGT00940000159130.a
Goldfish	MODERN SPECIES		DMD (ENSCARG00000002006)	ENSCARG00000006312	knstrn (ENSCARG00000006334)	SDK1 (ENSCARG00000006501)	ENSCARG00000008048	ENSCARG00000008050	dnaja1 (ENSCARG00000008062)	ENSCARG00000008141	rps6 (ENSCARG00000008188)	ENSCARG00000008246	ENSCARG00000008252	ENSCARG00000008259	ENSCARG00000008269	ddx39aa (ENSCARG00000008295)	EVI5L (ENSCARG00000008442) ##21	ENSCARG00000011052 ##22	ENSCARG00000011060	ENSCARG00000011071	ENSCARG00000011072	emp1 (ENSCARG00000011079)	f8a (ENSCARG00000011083)	si:ch211-243a20.3 (ENSCARG00000011093)	grin2bb (ENSCARG00000011095)	atf7ip (ENSCARG00000011104)	septin3 (ENSCARG00000011136)	serhl (ENSCARG00000011169)	trappc5 (ENSCARG00000011176)	mcoln1a (ENSCARG00000011233)	ENSCARG00000012576 ##26	PKN1 (ENSCARG00000012630)	map2k7 (ENSCARG00000014078)
Cyprininae	ANCESTRAL SPECIES	1653																ENSGT00940000156166.b.b.b ##22	ENSGT00940000161324
Cyprininae_a	ANCESTRAL SPECIES	66				ENSGT00940000157122.b.a.n.b	ENSGT00940000153558.c	ENSGT00940000155007.n.b.d	ENSGT00390000009819.a.a.ac.a	ENSGT00940000177191	ENSGT00390000009819.a.a.`c	ENSGT00530000063926.a	ENSGT00940000165823.a	ENSGT00390000008711.h.c	ENSGT00950000184120.a	ENSGT00940000154912.v.b.a	ENSGT00940000153846.a.b.h ##21	ENSGT00940000156166.b.b.b ##22	ENSGT00940000161324	ENSGT00940000163253.a.a.a	ENSGT00990000208598	ENSGT00950000182696.A.a.b.a	ENSGT00390000016992.b	ENSGT00410000026495.B.g	ENSGT00940000155964.h.b	ENSGT00530000063707.a.g	ENSGT00940000158004.p	ENSGT00530000063960.d	ENSGT00390000000976.f.b	ENSGT00950000183036.b.e.f	ENSGT00940000154382.a.a.l.a ##26	ENSGT00940000154990.fb.a.a	ENSGT00940000158914.d
Golden-line barbel	MODERN SPECIES	338							ENSSGRG00000025905	dnaja1 (ENSSGRG00000025964)	ENSSGRG00000026146	rps6 (ENSSGRG00000026150)	ENSSGRG00000026185	ENSSGRG00000026187	zgc:111983 (ENSSGRG00000026188)	ddx39aa (ENSSGRG00000026215)	EVI5L (ENSSGRG00000026574) ##21	ENSSGRG00000027144 ##22	ENSSGRG00000027146	ENSSGRG00000027149	emp1 (ENSSGRG00000027151)	f8a (ENSSGRG00000027154)	si:ch211-243a20.3 (ENSSGRG00000027317)	grin2bb (ENSSGRG00000027319)	atf7ip (ENSSGRG00000027321)	septin3 (ENSSGRG00000027360)	serhl (ENSSGRG00000027961)	trappc5 (ENSSGRG00000027962)	mcoln1a (ENSSGRG00000027966)	ENSSGRG00000028517 ##26	ENSSGRG00000028519	PKN1 (ENSSGRG00000028571)	map2k7 (ENSSGRG00000030917)
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Perciformes	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Pike perch	MODERN SPECIES	125					ubn2b (ENSSLUG00000016197)	rpsa (ENSSLUG00000016225)	slc25a38a (ENSSLUG00000016251)	MYH9 (ENSSLUG00000016485)	txn2 (ENSSLUG00000020741)	ENSSLUG00000020745	ENSSLUG00000020747	ENSSLUG00000020751	DDX39A (ENSSLUG00000020763)	ENSSLUG00000020912	ENSSLUG00000020916	ENSSLUG00000020920 ##22	ENSSLUG00000020921	pkn1b (ENSSLUG00000020989)	ENSSLUG00000021999	ENSSLUG00000022002	MCOLN1 (ENSSLUG00000022031)	trappc5 (ENSSLUG00000022581)	pglyrp6 (ENSSLUG00000022594)	ENSSLUG00000022601	ptger1b (ENSSLUG00000022611)	ilf3b (ENSSLUG00000022642)	farsa (ENSSLUG00000022696)	gcdhb (ENSSLUG00000022783)	SLC44A2 (ENSSLUG00000023321)	ENSSLUG00000023432	ENSSLUG00000023434
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000156166.b.b ##22
Huchen	MODERN SPECIES	853															ENSHHUG00000052200	ENSHHUG00000052196 ##22	ENSHHUG00000052193 ##29	PKN1 (ENSHHUG00000052156)	ENSHHUG00000052148	MCOLN1 (ENSHHUG00000052141)	trappc5 (ENSHHUG00000052128)	pglyrp6 (ENSHHUG00000052121)	ENSHHUG00000052120	ENSHHUG00000052119	ptger1b (ENSHHUG00000052118)	ilf3b (ENSHHUG00000052098)	farsa (ENSHHUG00000052070)	syce2 (ENSHHUG00000052066)	gcdhb (ENSHHUG00000052063)	SLC44A2 (ENSHHUG00000051956)	ENSHHUG00000051939
Osteoglossiformes	ANCESTRAL SPECIES	41	ENSGT00940000154272.B.b	ENSGT00940000158772.b	ENSGT00530000063753.A.b	ENSGT00530000063599.A	ENSGT00440000038745.a.a.b	ENSGT00940000155159.C.db	ENSGT00940000155858.e	ENSGT00550000075117.m.b	ENSGT00940000155632.o	ENSGT00530000064086.s	ENSGT00940000165172.a	ENSGT00940000154912.t	ENSGT00940000159311.d.a.a	ENSGT01040000240732	ENSGT00940000153846.a.b.b ##21	ENSGT00940000156166.b.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000154990.eb	ENSGT01100000263820	ENSGT00950000183036.b.f	ENSGT00390000000976	ENSGT00940000158718.a.b	ENSGT00530000063777.a.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.a.p	ENSGT00940000156719.q	ENSGT00390000006387	ENSGT00940000166067	ENSGT00940000168682	ENSGT00940000158116.a.b	ENSGT00940000158178.b.a.g
P. kingsleyae	MODERN SPECIES	305					PIK3R6 (ENSPKIG00000005545)	mfsd6l (ENSPKIG00000005588)	MYH10 (ENSPKIG00000005708)	ENSPKIG00000006012	MYH9 (ENSPKIG00000006098)	txn2 (ENSPKIG00000006251)	ENSPKIG00000006266	DDX39A (ENSPKIG00000006284)	ENSPKIG00000006317	EVI5L (ENSPKIG00000006369) ##21	ENSPKIG00000006485	ENSPKIG00000006515 ##22	ENSPKIG00000006549 ##29	PKN1 (ENSPKIG00000006612)	ENSPKIG00000006696	MCOLN1 (ENSPKIG00000006721)	trappc5 (ENSPKIG00000006799)	pglyrp6 (ENSPKIG00000006826)	ENSPKIG00000006866	nanos3 (ENSPKIG00000006905)	ENSPKIG00000006921	ptger1a (ENSPKIG00000006939)	ilf3b (ENSPKIG00000007019)	farsa (ENSPKIG00000007170)	ENSPKIG00000007215	syce2 (ENSPKIG00000007229)	gcdhb (ENSPKIG00000007270)
Asian bonytongue	MODERN SPECIES	12	cfap52 (ENSSFOG00015006968)	stx8 (ENSSFOG00015007012)	ENSSFOG00015028341	PIK3R5 (ENSSFOG00015007040)	PIK3R6 (ENSSFOG00015007059)	pik3r6a (ENSSFOG00015007085)	MYH10 (ENSSFOG00015007136)	ubn2a (ENSSFOG00015007353)	ttc26 (ENSSFOG00015007561)	rpsa (ENSSFOG00015007613)	slc25a38b (ENSSFOG00015007665)	myh9a (ENSSFOG00015007718)	ENSSFOG00015007910	DDX39A (ENSSFOG00015007928)	EVI5L (ENSSFOG00015007964) ##21	ENSSFOG00015008114 ##22	map2k7 (ENSSFOG00015008143)	PKN1 (ENSSFOG00015008226)	si:ch211-214c7.5 (ENSSFOG00015008314)	ENSSFOG00015027299 ##26	mcoln1a (ENSSFOG00015008363)	pglyrp2 (ENSSFOG00015008417)	ENSSFOG00015008514	ENSSFOG00015008605	ptger1a (ENSSFOG00015008694)	ilf3b (ENSSFOG00015008720)	acp5a (ENSSFOG00015008808)	SLC44A2 (ENSSFOG00015008816)	ENSSFOG00015008903	odad3 (ENSSFOG00015008950)	ENSSFOG00015008997
Sarcopterygii	ANCESTRAL SPECIES	128	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000156518.C	ENSGT00900000141021.b.b	ENSGT00940000163101	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c	ENSGT00940000161507	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00390000000976	ENSGT00940000158718	ENSGT00940000159979
Coelacanth	MODERN SPECIES	329	OLFM2 (ENSLACG00000013392)	UBL5 (ENSLACG00000015288)	ENSLACG00000015326	ENSLACG00000015403	ENSLACG00000022314	ENSLACG00000015722	ENSLACG00000015862	ENSLACG00000015947	ATP13A1 (ENSLACG00000015977)	MVB12A (ENSLACG00000016128)	ENSLACG00000016228	pbx4 (ENSLACG00000016442)	GMIP (ENSLACG00000017076) ##8	NXNL1 (ENSLACG00000017286)	EVI5L (ENSLACG00000017352) ##21	ENSLACG00000017590 ##22	TDRKH (ENSLACG00000017639)	si:ch211-113g11.6 (ENSLACG00000017662)	lingo4b (ENSLACG00000017744)	RORC (ENSLACG00000017778)
Tetrapoda	ANCESTRAL SPECIES	172															ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c	ENSGT00940000154382.a.a ##26	ENSGT00940000163111.a.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000166147
Amniota	ANCESTRAL SPECIES	31	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b ##28	ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00940000175175	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c	ENSGT00940000154382.a.a ##26	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000166147	ENSGT01030000234559.a.a.b.a
Sauria	ANCESTRAL SPECIES	58	ENSGT00950000183036.b	ENSGT00940000155021	ENSGT00940000161507	ENSGT00940000158718	ENSGT00940000161423	ENSGT00940000159979	ENSGT00530000063777.a.a.a	ENSGT01090000260395	ENSGT00940000160234	ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00940000175175	ENSGT00830000128645.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000160045	ENSGT00390000016177	ENSGT00940000157017.b	ENSGT00390000000976	ENSGT00940000161836	ENSGT00390000018759	ENSGT00950000182886.a.a.b
Archelosauria	ANCESTRAL SPECIES	55	ENSGT00530000063777.a.a.a	ENSGT00940000162790.a	ENSGT00940000160234	ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000160045	ENSGT00390000016177	ENSGT00940000157017.b	ENSGT00390000000976	ENSGT00940000161836	ENSGT00830000128645.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c
Cryptodira	ANCESTRAL SPECIES	66	ENSGT00530000063777.a.a.b	ENSGT00940000154549.b ##28	ENSGT00940000160234	ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000160045	ENSGT00390000016177	ENSGT00940000157017.b	ENSGT00390000000976	ENSGT00940000161836	ENSGT00830000128645.a	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c
Testudinoidea	ANCESTRAL SPECIES	76															ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c	ENSGT00940000154382.a.a ##26	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a.e	ENSGT00390000004692.d.a.k	ENSGT00940000159684.jb	ENSGT00980000199422
Testudinidae	ANCESTRAL SPECIES	130															ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00530000063861.a ##29	ENSGT00940000158914	ENSGT00940000159311.d.a.a	ENSGT00940000159311.c
Goode s thornscrub tortoise	MODERN SPECIES	147	ENSGEVG00005013874	TRAPPC5 (ENSGEVG00005013921)	KISS1R (ENSGEVG00005013954)	ENSGEVG00005014010	ENSGEVG00005014043	ENSGEVG00005014076	ENSGEVG00005014126	ENSGEVG00005014245	ENSGEVG00005014825	ENSGEVG00005014873	ENSGEVG00005014918	ENSGEVG00005014934	ENSGEVG00005014962	ENSGEVG00005014996	EVI5L (ENSGEVG00005015033) ##21	ENSGEVG00005015076 ##22	ENSGEVG00005015096 ##29	MAP2K7 (ENSGEVG00005015157)	ENSGEVG00005015208	ENSGEVG00005015231	ENSGEVG00005015253	ENSGEVG00005013180	ENSGEVG00005013324 ##26	ENSGEVG00005013360	ENSGEVG00005013464	ENSGEVG00005013574	ADGRL1 (ENSGEVG00005014814)	ENSGEVG00005019766	ADGRE5 (ENSGEVG00005019786)	DDX39A (ENSGEVG00005019887)	PKN1 (ENSGEVG00005019922)
Mammalia	ANCESTRAL SPECIES	64	ENSGT00940000157375	ENSGT00950000182983.B.a.a	ENSGT00390000000427	ENSGT00390000014215	ENSGT00940000162948	ENSGT00950000183036.b	ENSGT00940000159130	ENSGT00950000182975.a.b	ENSGT00550000075140	ENSGT00390000016884	ENSGT00940000162025	ENSGT00940000160045	ENSGT00390000016177	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b ##21	ENSGT00940000156166.b ##22	ENSGT00940000154382.a.a ##26	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a ##29	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000161573	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000164486
Platypus	MODERN SPECIES	84	MCOLN1 (ENSOANG00000001138)	PNPLA6 (ENSOANG00000008685)	CAMSAP3 (ENSOANG00000010990)	XAB2 (ENSOANG00000037563)	ENSOANG00000042501	ENSOANG00000037342	STXBP2 (ENSOANG00000009407)	ENSOANG00000007858	ENSOANG00000048679	ENSOANG00000050221	TRAPPC5 (ENSOANG00000043372)	ENSOANG00000038482	ENSOANG00000009700	ENSOANG00000030515	ENSOANG00000036950 ##21	ENSOANG00000036052 ##22	ENSOANG00000041203 ##26	LRRC8E (ENSOANG00000043083)	ENSOANG00000049040 ##29	MAP2K7 (ENSOANG00000015355)	CLPP (ENSOANG00000012221)	ALKBH7 (ENSOANG00000045418)	ENSOANG00000000620	GTF2F1 (ENSOANG00000006110)	ENSOANG00000044176	ENSOANG00000000264	ENSOANG00000000261	SLC25A23 (ENSOANG00000001661)	ENSOANG00000042448	ENSOANG00000008407	ENSOANG00000044041
Theria	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Bos	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000156166.b ##22
Cow	MODERN SPECIES	27	DOCK8 (ENSBTAG00000002190)	KANK1 (ENSBTAG00000010976)	DMRT1 (ENSBTAG00000033352)	DMRT3 (ENSBTAG00000017800)	DMRT2 (ENSBTAG00000008062)	SMARCA2 (ENSBTAG00000007494)	ENSBTAG00000051041	ENSBTAG00000048500	VLDLR (ENSBTAG00000018517)	KCNV2 (ENSBTAG00000017884)	PUM3 (ENSBTAG00000013357)	RFX3 (ENSBTAG00000000819)	ENSBTAG00000014467	ENSBTAG00000052736	SLC1A1 (ENSBTAG00000019125)	PLPP6 (ENSBTAG00000011050) ##22	ENSBTAG00000046486	SPATA6L (ENSBTAG00000011048)	CDC37L1 (ENSBTAG00000017137) ##29	AK3 (ENSBTAG00000017147)	RCL1 (ENSBTAG00000018667)	JAK2 (ENSBTAG00000012047)	INSL6 (ENSBTAG00000006651)	PLGRKT (ENSBTAG00000017530)	CD274 (ENSBTAG00000000095)	PDCD1LG2 (ENSBTAG00000033316)	RIC1 (ENSBTAG00000001283)	ERMP1 (ENSBTAG00000015607)	MLANA (ENSBTAG00000007440)	KIAA2026 (ENSBTAG00000047550)	RANBP6 (ENSBTAG00000012168)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000156166 #22
Hagfish	MODERN SPECIES	249													ENSEBUG00000014144	ENSEBUG00000006718	ENSEBUG00000012465	ENSEBUG00000008075 #22	ENSEBUG00000009849	ENSEBUG00000005228	ENSEBUG00000001197	ENSEBUG00000009959	ENSEBUG00000015699	VPS52 (ENSEBUG00000014424)	ENSEBUG00000002149	ENSEBUG00000012592	ENSEBUG00000009017	ENSEBUG00000015723	ENSEBUG00000009552	ENSEBUG00000006454	ENSEBUG00000006774
Ciona	ANCESTRAL SPECIES	61											ENSGT00940000154352.A	ENSGT00390000004798	ENSGT00940000158244	ENSGT00390000014084	ENSGT00390000012312	ENSGT00940000156166 #22	ENSGT00940000166710.b
Ciona savignyi	MODERN SPECIES	113	ENSCSAVG00000006172	ENSCSAVG00000006151	ENSCSAVG00000006144	ENSCSAVG00000006079	ENSCSAVG00000006052	ENSCSAVG00000006002	ENSCSAVG00000005997	ENSCSAVG00000005985	ENSCSAVG00000005976	ENSCSAVG00000005968	ENSCSAVG00000005940	ENSCSAVG00000005932	ENSCSAVG00000005922	ENSCSAVG00000005915	ENSCSAVG00000005909	ENSCSAVG00000005904 #22	ENSCSAVG00000005899	ENSCSAVG00000005880	ENSCSAVG00000005873	ENSCSAVG00000005869	ENSCSAVG00000005489	ENSCSAVG00000005478	ENSCSAVG00000005276	ENSCSAVG00000005270	ENSCSAVG00000005267	ENSCSAVG00000005263	ENSCSAVG00000005250	ENSCSAVG00000005197	ENSCSAVG00000005194	ENSCSAVG00000004246
Ciona intestinalis	MODERN SPECIES	6	ENSCING00000011334	ENSCING00000024257	ENSCING00000016950	ENSCING00000006792	ENSCING00000024094	ENSCING00000011336	ENSCING00000006793	ENSCING00000011337	ENSCING00000011338	ENSCING00000006797	ENSCING00000006799	ENSCING00000011339	ENSCING00000006800	ENSCING00000011340	ENSCING00000011341	ENSCING00000011342 #22	ENSCING00000011343	ENSCING00000019868	ENSCING00000011344	ENSCING00000006692	ENSCING00000006696	ENSCING00000019120	ENSCING00000006698	ENSCING00000011345	ENSCING00000006699	ENSCING00000006702	ENSCING00000006703	ENSCING00000006709	ENSCING00000011346	ci-arfgap-11 (ENSCING00000006711)	ENSCING00000018144
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000156166 #22
Fruitfly	MODERN SPECIES	18	CG10116 (FBgn0036367)	CG10738 (FBgn0036368)	JMJD7 (FBgn0036366)	cmb (FBgn0036365)	CG14109 (FBgn0036364)	CG10140 (FBgn0036363)	CG10725 (FBgn0036362)	CG10154 (FBgn0036361)	CG10713 (FBgn0036360)	CG14105 (FBgn0036359)	CG14106 (FBgn0260459)	CG33263 (FBgn0053263)	CG32121 (FBgn0052121)	flr (FBgn0260049)	CG10222 (FBgn0036356)	sens (FBgn0002573) #22	Poc1 (FBgn0036354)	CG10171 (FBgn0036353)	CG14110 (FBgn0036352)	ImpL1 (FBgn0001256)	CG14107 (FBgn0036351)	SNCF (FBgn0036349)	CG14111 (FBgn0036350)	Nplp2 (FBgn0287423)	CG17687 (FBgn0036348)	CG14113 (FBgn0040814)	SP (FBgn0003034)	CG43147 (FBgn0262623)	CG42481 (FBgn0259971)	Sfp70A4 (FBgn0259970)	CG32119 (FBgn0052119)