Glires	ANCESTRAL SPECIES	21	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.E ##18	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705.k #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Marmotini	ANCESTRAL SPECIES	12	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705.k #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705.k #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Arctic ground squirrel	MODERN SPECIES	73	PIK3R2 (ENSUPAG00010018802) #7	IFI30 (ENSUPAG00010018797) #8	MPV17L2 (ENSUPAG00010018792) #9	RAB3A (ENSUPAG00010018778) #10	PDE4C (ENSUPAG00010018713) #11	ENSUPAG00010018681 #12	JUND (ENSUPAG00010018676) #13	ENSUPAG00010018660 #14	PGPEP1 (ENSUPAG00010018652) #15	GDF15 (ENSUPAG00010018644) #16	LRRC25 (ENSUPAG00010018637) #17	SSBP4 (ENSUPAG00010018547) #18	ISYNA1 (ENSUPAG00010018527) #19	ELL (ENSUPAG00010018509) #20	FKBP8 (ENSUPAG00010018474) #21	UBA52 (ENSUPAG00010018444) #22	REX1BD (ENSUPAG00010018419) #23	CRLF1 (ENSUPAG00010018403) #24	TMEM59L (ENSUPAG00010018396) #25	KLHL26 (ENSUPAG00010018384) #26	CRTC1 (ENSUPAG00010018349) #27	COMP (ENSUPAG00010018331) #28	UPF1 (ENSUPAG00010018302) #29	GDF1 (ENSUPAG00010018300) #30	CERS1 (ENSUPAG00010018294) #31	COPE (ENSUPAG00010018276) #32	DDX49 (ENSUPAG00010018246) #33	HOMER3 (ENSUPAG00010018230) #34	SUGP2 (ENSUPAG00010018216) #35	ARMC6 (ENSUPAG00010018208) #36	SLC25A42 (ENSUPAG00010018191) #37
Squirrel	MODERN SPECIES	196	PIK3R2 (ENSSTOG00000001921) #7	IFI30 (ENSSTOG00000001939) #8	MPV17L2 (ENSSTOG00000023670) #9	RAB3A (ENSSTOG00000002981) #10	PDE4C (ENSSTOG00000000320) #11	ENSSTOG00000033779	IQCN (ENSSTOG00000025440) #12	LSM4 (ENSSTOG00000016494) #14	PGPEP1 (ENSSTOG00000003948) #15	GDF15 (ENSSTOG00000022430) #16	LRRC25 (ENSSTOG00000013485) #17	SSBP4 (ENSSTOG00000029026) #18	ISYNA1 (ENSSTOG00000022613) #19	ELL (ENSSTOG00000004646) #20	FKBP8 (ENSSTOG00000014068) #21	UBA52 (ENSSTOG00000004678) #22	REX1BD (ENSSTOG00000004692) #23	CRLF1 (ENSSTOG00000004708) #24	TMEM59L (ENSSTOG00000013508) #25	KLHL26 (ENSSTOG00000026260) #26	CRTC1 (ENSSTOG00000022992) #27	COMP (ENSSTOG00000026172) #28	UPF1 (ENSSTOG00000009196) #29	GDF1 (ENSSTOG00000020887) #30	CERS1 (ENSSTOG00000029010) #31	COPE (ENSSTOG00000006736) #32	DDX49 (ENSSTOG00000006749) #33	HOMER3 (ENSSTOG00000029095) #34	SUGP2 (ENSSTOG00000026887) #35	ARMC6 (ENSSTOG00000012997) #36	SLC25A42 (ENSSTOG00000022047) #37
Eurasian red squirrel	MODERN SPECIES	7	IFI30 (ENSSVLG00005025456) #8	MPV17L2 (ENSSVLG00005025463) #9	RAB3A (ENSSVLG00005025472) #10	PDE4C (ENSSVLG00005025492) #11	ENSSVLG00005025525 #12	JUND (ENSSVLG00005025531) #13	LSM4 (ENSSVLG00005025539) #14	PGPEP1 (ENSSVLG00005025546) #15	GDF15 (ENSSVLG00005025552) #16	LRRC25 (ENSSVLG00005025559) #17	SSBP4 (ENSSVLG00005025573) #18	ISYNA1 (ENSSVLG00005025602) #19	ELL (ENSSVLG00005025617) #20	FKBP8 (ENSSVLG00005025627) #21	KXD1 (ENSSVLG00005025639)	UBA52 (ENSSVLG00005025643) #22	REX1BD (ENSSVLG00005015816) #23	CRLF1 (ENSSVLG00005015862) #24	TMEM59L (ENSSVLG00005015929) #25	KLHL26 (ENSSVLG00005015974) #26	CRTC1 (ENSSVLG00005016088) #27	COMP (ENSSVLG00005016356) #28	UPF1 (ENSSVLG00005016436) #29	CERS1 (ENSSVLG00005016494) #31	COPE (ENSSVLG00005016567) #32	DDX49 (ENSSVLG00005016654) #33	HOMER3 (ENSSVLG00005016701) #34	SUGP2 (ENSSVLG00005016823) #35	ARMC6 (ENSSVLG00005016951) #36	SLC25A42 (ENSSVLG00005017005) #37	TMEM161A (ENSSVLG00005017057)
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.d ##22	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00940000157050 #7	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Guinea pig	MODERN SPECIES	72	PIK3R2 (ENSCPOG00000024452) #7	Ifi30 (ENSCPOG00000005553) #8	RAB3A (ENSCPOG00000038085) #10	MPV17L2 (ENSCPOG00000039365) #9	PDE4C (ENSCPOG00000030930) #11	ENSCPOG00000035754	JUND (ENSCPOG00000025912) #13	LSM4 (ENSCPOG00000024117) #14	PGPEP1 (ENSCPOG00000031925) #15	GDF15 (ENSCPOG00000032675) #16	ENSCPOG00000031969 #17	ENSCPOG00000025088 ##18	ISYNA1 (ENSCPOG00000027332) #19	ELL (ENSCPOG00000022431) #20	FKBP8 (ENSCPOG00000026709) #21	UBA52 (ENSCPOG00000025880) #22	CRLF1 (ENSCPOG00000021160) #24	TMEM59L (ENSCPOG00000021490) #25	KLHL26 (ENSCPOG00000020718) #26	CRTC1 (ENSCPOG00000034343) #27	COMP (ENSCPOG00000025029) #28	UPF1 (ENSCPOG00000025463) #29	GDF1 (ENSCPOG00000031791) #30	CERS1 (ENSCPOG00000033783) #31	COPE (ENSCPOG00000013624) #32	DDX49 (ENSCPOG00000013626) #33	HOMER3 (ENSCPOG00000004565) #34	SUGP2 (ENSCPOG00000006372) #35	ARMC6 (ENSCPOG00000006374) #36	SLC25A42 (ENSCPOG00000013086) #37	TMEM161A (ENSCPOG00000013640)
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00940000157166	ENSGT00940000157050 #7	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Long-tailed chinchilla	MODERN SPECIES	231	ARRDC2 (ENSCLAG00000005752)	MAST3 (ENSCLAG00000012903)	PIK3R2 (ENSCLAG00000014107) #7	IFI30 (ENSCLAG00000016108) #8	MPV17L2 (ENSCLAG00000015953) #9	RAB3A (ENSCLAG00000015642) #10	PDE4C (ENSCLAG00000016330) #11	LSM4 (ENSCLAG00000010828) #14	PGPEP1 (ENSCLAG00000010542) #15	GDF15 (ENSCLAG00000010045) #16	ENSCLAG00000009618 #17	SSBP4 (ENSCLAG00000013009) #18	ISYNA1 (ENSCLAG00000008992) #19	ELL (ENSCLAG00000007609) #20	FKBP8 (ENSCLAG00000005953) #21	UBA52 (ENSCLAG00000005686) #22	ENSCLAG00000007191 #23	CRLF1 (ENSCLAG00000006697) #24	TMEM59L (ENSCLAG00000006357) #25	KLHL26 (ENSCLAG00000006029) #26	CRTC1 (ENSCLAG00000005682) #27	COMP (ENSCLAG00000005109) #28	UPF1 (ENSCLAG00000004037) #29	CERS1 (ENSCLAG00000003897) #31	COPE (ENSCLAG00000003621) #32	DDX49 (ENSCLAG00000012844) #33	HOMER3 (ENSCLAG00000011599) #34	SUGP2 (ENSCLAG00000011375) #35	ARMC6 (ENSCLAG00000008215) #36	SLC25A42 (ENSCLAG00000008004) #37	TMEM161A (ENSCLAG00000007578)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	323	ARRDC2 (ENSODEG00000013689)	ENSODEG00000012843	ENSODEG00000012781	PIK3R2 (ENSODEG00000013440) #7	IFI30 (ENSODEG00000014388) #8	MPV17L2 (ENSODEG00000013238) #9	RAB3A (ENSODEG00000012269) #10	PDE4C (ENSODEG00000013172) #11	JUND (ENSODEG00000013414) #13	ENSODEG00000011712 #14	PGPEP1 (ENSODEG00000012364) #15	SSBP4 (ENSODEG00000012832) #18	ISYNA1 (ENSODEG00000011920) #19	ELL (ENSODEG00000012821) #20	ENSODEG00000013486 #21	ENSODEG00000012337 #22	REX1BD (ENSODEG00000013625) #23	CRLF1 (ENSODEG00000012883) #24	TMEM59L (ENSODEG00000012052) #25	KLHL26 (ENSODEG00000012544) #26	CRTC1 (ENSODEG00000011739) #27	COMP (ENSODEG00000015412) #28	UPF1 (ENSODEG00000012426) #29	GDF1 (ENSODEG00000011857) #30	CERS1 (ENSODEG00000011214) #31	COPE (ENSODEG00000011547) #32	DDX49 (ENSODEG00000011203) #33	HOMER3 (ENSODEG00000014870) #34	SUGP2 (ENSODEG00000012058) #35	ARMC6 (ENSODEG00000012613) #36	SLC25A42 (ENSODEG00000012168) #37
Degu	MODERN SPECIES	68	ENSODEG00000010322	ENSODEG00000009802	ENSODEG00000009981	DPP6 (ENSODEG00000011104)	PAXIP1 (ENSODEG00000011288)	HTR5A (ENSODEG00000014269)	INSIG1 (ENSODEG00000010315)	EN2 (ENSODEG00000010942)	ENSODEG00000010168	ENSODEG00000010830	ENSODEG00000009918	SHH (ENSODEG00000010106)	ENSODEG00000019851	RNF32 (ENSODEG00000010017)	ENSODEG00000010749	ENSODEG00000019843 #22	NOM1 (ENSODEG00000009399)	MNX1 (ENSODEG00000010950)	UBE3C (ENSODEG00000009899)	ENSODEG00000011519	NCAPG2 (ENSODEG00000012038)	ESYT2 (ENSODEG00000011842)	ENSODEG00000010339	DYNC2I1 (ENSODEG00000013131)	VIPR2 (ENSODEG00000009696)
Degu	MODERN SPECIES	130	ENSODEG00000007325	ENSODEG00000007255	DIS3L2 (ENSODEG00000007857)	ENSODEG00000019419	NPPC (ENSODEG00000007066)	COPS7B (ENSODEG00000006886)	ENSODEG00000006860	ENSODEG00000007492	NMUR1 (ENSODEG00000006998)	ENSODEG00000007803	B3GNT7 (ENSODEG00000008876)	ARMC9 (ENSODEG00000008401)	HTR2B (ENSODEG00000007544)	ENSODEG00000006511	SPATA3 (ENSODEG00000006991)	ENSODEG00000019367 #22	ITM2C (ENSODEG00000007143)	CAB39 (ENSODEG00000006973)	ENSODEG00000006353	ENSODEG00000010013	ENSODEG00000007283	SLC16A14 (ENSODEG00000007138)	TRIP12 (ENSODEG00000009098)	ENSODEG00000007427	DNER (ENSODEG00000006981)	PID1 (ENSODEG00000008905)
Degu	MODERN SPECIES	118	SPATA2 (ENSODEG00000006882)	SLC9A8 (ENSODEG00000007225)	ENSODEG00000006524	PTGIS (ENSODEG00000006946)	KCNB1 (ENSODEG00000007239)	ZNFX1 (ENSODEG00000006490)	DDX27 (ENSODEG00000006281)	STAU1 (ENSODEG00000006523)	ENSODEG00000006918	ARFGEF2 (ENSODEG00000008385)	PREX1 (ENSODEG00000007710)	ENSODEG00000007170	SULF2 (ENSODEG00000007688)	ENSODEG00000006958	NCOA3 (ENSODEG00000007613)	ENSODEG00000019407 #22	ZMYND8 (ENSODEG00000008445)	EYA2 (ENSODEG00000007072)	ENSODEG00000008444	ENSODEG00000008838	SLC2A10 (ENSODEG00000009271)	TP53RK (ENSODEG00000009596)	SLC13A3 (ENSODEG00000007662)	OCSTAMP (ENSODEG00000007890)	ENSODEG00000019611	ENSODEG00000009097	ELMO2 (ENSODEG00000007725)	ENSODEG00000008484	ENSODEG00000008707	CDH22 (ENSODEG00000007669)	CD40 (ENSODEG00000008051)
Rodentia_B	ANCESTRAL SPECIES	37	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00940000166941	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.b.k ##22	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Myomorpha	ANCESTRAL SPECIES	43	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.b.k ##22	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Muroidea	ANCESTRAL SPECIES	47	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870	Ifi30 (ENSNGAG00000022275) #8	Mpv17l2 (ENSNGAG00000012070) #9	Rab3a (ENSNGAG00000020872) #10	Pde4c (ENSNGAG00000004214) #11	ENSNGAG00000014618	Iqcn (ENSNGAG00000014525) #12	Jund (ENSNGAG00000010099) #13	Lsm4 (ENSNGAG00000008644) #14	Pgpep1 (ENSNGAG00000022241) #15	Gdf15 (ENSNGAG00000019410) #16	Lrrc25 (ENSNGAG00000018288) #17	Ssbp4 (ENSNGAG00000023633) #18	Isyna1 (ENSNGAG00000013546) #19	Ell (ENSNGAG00000004302) #20	Fkbp8 (ENSNGAG00000001505) #21	Uba52 (ENSNGAG00000010884) #22	Rex1bd (ENSNGAG00000013627) #23	Crlf1 (ENSNGAG00000022169) #24	Tmem59l (ENSNGAG00000020797) #25	Klhl26 (ENSNGAG00000010743) #26	Crtc1 (ENSNGAG00000021475) #27	Comp (ENSNGAG00000024332) #28	Upf1 (ENSNGAG00000024107) #29	ENSNGAG00000022538 #30	ENSNGAG00000022292 #31	Cope (ENSNGAG00000022394) #32	Ddx49 (ENSNGAG00000019673) #33	Homer3 (ENSNGAG00000015803) #34	Sugp2 (ENSNGAG00000005936) #35	Armc6 (ENSNGAG00000021205) #36	Slc25a42 (ENSNGAG00000023980) #37
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Murinae	ANCESTRAL SPECIES	23	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Rat	MODERN SPECIES	7	Mpv17l2 (ENSRNOG00000019394) #9	Rab3a (ENSRNOG00000019433) #10	Pde4c (ENSRNOG00000019518) #11	LOC120093089 (ENSRNOG00000043249)	Iqcn (ENSRNOG00000068146) #12	Jund (ENSRNOG00000019568) #13	Lsm4 (ENSRNOG00000019572) #14	Pgpep1 (ENSRNOG00000019639) #15	Mk1 (ENSRNOG00000019657)	Gdf15 (ENSRNOG00000019661) #16	Lrrc25 (ENSRNOG00000022565) #17	Ssbp4 (ENSRNOG00000019698) #18	Isyna1 (ENSRNOG00000019741) #19	Ell (ENSRNOG00000019824) #20	Fkbp8 (ENSRNOG00000058359) #21	Uba52 (ENSRNOG00000019971) #22	Rex1bd (ENSRNOG00000019990) #23	Crlf1 (ENSRNOG00000020030) #24	Tmem59l (ENSRNOG00000022432) #25	Klhl26 (ENSRNOG00000020088) #26	Crtc1 (ENSRNOG00000022421) #27	Comp (ENSRNOG00000048472) #28	Upf1 (ENSRNOG00000020134) #29	Gdf1 (ENSRNOG00000070518) #30	Cers1 (ENSRNOG00000067124) #31	Cope (ENSRNOG00000020178) #32	Ddx49 (ENSRNOG00000022368) #33	Homer3 (ENSRNOG00000020229) #34	Sugp2 (ENSRNOG00000020269) #35	Armc6 (ENSRNOG00000020280) #36	Slc25a42 (ENSRNOG00000020345) #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	17	Mpv17l2 (MGP_CAROLIEiJ_G0031164) #9	Rab3a (MGP_CAROLIEiJ_G0031163) #10	Pde4c (MGP_CAROLIEiJ_G0031162) #11	Gm3336 (MGP_CAROLIEiJ_G0031161)	MGP_CAROLIEiJ_G0031160	Jund (MGP_CAROLIEiJ_G0031159) #13	Lsm4 (MGP_CAROLIEiJ_G0031158) #14	Pgpep1 (MGP_CAROLIEiJ_G0031157) #15	Gdf15 (MGP_CAROLIEiJ_G0031156) #16	Lrrc25 (MGP_CAROLIEiJ_G0031155) #17	Ssbp4 (MGP_CAROLIEiJ_G0031154) #18	Isyna1 (MGP_CAROLIEiJ_G0031153) #19	Ell (MGP_CAROLIEiJ_G0031152) #20	Fkbp8 (MGP_CAROLIEiJ_G0031151) #21	MGP_CAROLIEiJ_G0031150 #22	MGP_CAROLIEiJ_G0031149 #22	Rex1bd (MGP_CAROLIEiJ_G0031148) #23	Crlf1 (MGP_CAROLIEiJ_G0031147) #24	Tmem59l (MGP_CAROLIEiJ_G0031146) #25	Klhl26 (MGP_CAROLIEiJ_G0031145) #26	Crtc1 (MGP_CAROLIEiJ_G0031144) #27	Comp (MGP_CAROLIEiJ_G0031143) #28	Upf1 (MGP_CAROLIEiJ_G0031142) #29	MGP_CAROLIEiJ_G0031141 #30	Cope (MGP_CAROLIEiJ_G0031140) #32	Ddx49 (MGP_CAROLIEiJ_G0031139) #33	Homer3 (MGP_CAROLIEiJ_G0031138) #34	Sugp2 (MGP_CAROLIEiJ_G0031137) #35	Armc6 (MGP_CAROLIEiJ_G0031136) #36	Slc25a42 (MGP_CAROLIEiJ_G0031135) #37	Tmem161a (MGP_CAROLIEiJ_G0031134)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	16	Fam53b (MGP_CAROLIEiJ_G0030580)	Eef1akmt2 (MGP_CAROLIEiJ_G0030581)	Abraxas2 (MGP_CAROLIEiJ_G0030582)	Zranb1 (MGP_CAROLIEiJ_G0030583)	Ctbp2 (MGP_CAROLIEiJ_G0030584)	Tex36 (MGP_CAROLIEiJ_G0030585)	Edrf1 (MGP_CAROLIEiJ_G0030586)	Mmp21 (MGP_CAROLIEiJ_G0030587)	Uros (MGP_CAROLIEiJ_G0030588)	Bccip (MGP_CAROLIEiJ_G0030589)	Dhx32 (MGP_CAROLIEiJ_G0030590)	Fank1 (MGP_CAROLIEiJ_G0030591)	Adam12 (MGP_CAROLIEiJ_G0030592)	D7Ertd443e (MGP_CAROLIEiJ_G0030593)	MGP_CAROLIEiJ_G0030594 #22	MGP_CAROLIEiJ_G0030595 #22	Dock1 (MGP_CAROLIEiJ_G0030596)	Insyn2a (MGP_CAROLIEiJ_G0030597)	Nps (MGP_CAROLIEiJ_G0030598)	MGP_CAROLIEiJ_G0030599	Foxi2 (MGP_CAROLIEiJ_G0030600)	Clrn3 (MGP_CAROLIEiJ_G0030601)	Ptpre (MGP_CAROLIEiJ_G0030602)	MGP_CAROLIEiJ_G0030603	Mgmt (MGP_CAROLIEiJ_G0030604)	Ebf3 (MGP_CAROLIEiJ_G0030605)	MGP_CAROLIEiJ_G0030606	Glrx3 (MGP_CAROLIEiJ_G0030607)	Tcerg1l (MGP_CAROLIEiJ_G0030608)	Mapk1ip1 (MGP_CAROLIEiJ_G0030609)	Ppp2r2d (MGP_CAROLIEiJ_G0030610)
Ryukyu mouse	MODERN SPECIES	16	Lhpp (MGP_CAROLIEiJ_G0030579)	Fam53b (MGP_CAROLIEiJ_G0030580)	Eef1akmt2 (MGP_CAROLIEiJ_G0030581)	Abraxas2 (MGP_CAROLIEiJ_G0030582)	Zranb1 (MGP_CAROLIEiJ_G0030583)	Ctbp2 (MGP_CAROLIEiJ_G0030584)	Tex36 (MGP_CAROLIEiJ_G0030585)	Edrf1 (MGP_CAROLIEiJ_G0030586)	Mmp21 (MGP_CAROLIEiJ_G0030587)	Uros (MGP_CAROLIEiJ_G0030588)	Bccip (MGP_CAROLIEiJ_G0030589)	Dhx32 (MGP_CAROLIEiJ_G0030590)	Fank1 (MGP_CAROLIEiJ_G0030591)	Adam12 (MGP_CAROLIEiJ_G0030592)	D7Ertd443e (MGP_CAROLIEiJ_G0030593)	MGP_CAROLIEiJ_G0030594 #22	MGP_CAROLIEiJ_G0030595 #22	Dock1 (MGP_CAROLIEiJ_G0030596)	Insyn2a (MGP_CAROLIEiJ_G0030597)	Nps (MGP_CAROLIEiJ_G0030598)	MGP_CAROLIEiJ_G0030599	Foxi2 (MGP_CAROLIEiJ_G0030600)	Clrn3 (MGP_CAROLIEiJ_G0030601)	Ptpre (MGP_CAROLIEiJ_G0030602)	MGP_CAROLIEiJ_G0030603	Mgmt (MGP_CAROLIEiJ_G0030604)	Ebf3 (MGP_CAROLIEiJ_G0030605)	MGP_CAROLIEiJ_G0030606	Glrx3 (MGP_CAROLIEiJ_G0030607)	Tcerg1l (MGP_CAROLIEiJ_G0030608)	Mapk1ip1 (MGP_CAROLIEiJ_G0030609)
Ryukyu mouse	MODERN SPECIES	17	Ifi30 (MGP_CAROLIEiJ_G0031165) #8	Mpv17l2 (MGP_CAROLIEiJ_G0031164) #9	Rab3a (MGP_CAROLIEiJ_G0031163) #10	Pde4c (MGP_CAROLIEiJ_G0031162) #11	Gm3336 (MGP_CAROLIEiJ_G0031161)	MGP_CAROLIEiJ_G0031160	Jund (MGP_CAROLIEiJ_G0031159) #13	Lsm4 (MGP_CAROLIEiJ_G0031158) #14	Pgpep1 (MGP_CAROLIEiJ_G0031157) #15	Gdf15 (MGP_CAROLIEiJ_G0031156) #16	Lrrc25 (MGP_CAROLIEiJ_G0031155) #17	Ssbp4 (MGP_CAROLIEiJ_G0031154) #18	Isyna1 (MGP_CAROLIEiJ_G0031153) #19	Ell (MGP_CAROLIEiJ_G0031152) #20	Fkbp8 (MGP_CAROLIEiJ_G0031151) #21	MGP_CAROLIEiJ_G0031150 #22	MGP_CAROLIEiJ_G0031149 #22	Rex1bd (MGP_CAROLIEiJ_G0031148) #23	Crlf1 (MGP_CAROLIEiJ_G0031147) #24	Tmem59l (MGP_CAROLIEiJ_G0031146) #25	Klhl26 (MGP_CAROLIEiJ_G0031145) #26	Crtc1 (MGP_CAROLIEiJ_G0031144) #27	Comp (MGP_CAROLIEiJ_G0031143) #28	Upf1 (MGP_CAROLIEiJ_G0031142) #29	MGP_CAROLIEiJ_G0031141 #30	Cope (MGP_CAROLIEiJ_G0031140) #32	Ddx49 (MGP_CAROLIEiJ_G0031139) #33	Homer3 (MGP_CAROLIEiJ_G0031138) #34	Sugp2 (MGP_CAROLIEiJ_G0031137) #35	Armc6 (MGP_CAROLIEiJ_G0031136) #36	Slc25a42 (MGP_CAROLIEiJ_G0031135) #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Mouse	MODERN SPECIES	17	Mpv17l2 (ENSMUSG00000035559) #9	Rab3a (ENSMUSG00000031840) #10	Pde4c (ENSMUSG00000031842) #11	Gm3336 (ENSMUSG00000095026)	Iqcn (ENSMUSG00000110622) #12	Jund (ENSMUSG00000071076) #13	Lsm4 (ENSMUSG00000031848) #14	Pgpep1 (ENSMUSG00000056204) #15	Gdf15 (ENSMUSG00000038508) #16	Lrrc25 (ENSMUSG00000049988) #17	Ssbp4 (ENSMUSG00000070003) #18	Isyna1 (ENSMUSG00000019139) #19	Ell (ENSMUSG00000070002) #20	Fkbp8 (ENSMUSG00000019428) #21	Kxd1 (ENSMUSG00000055553) ##22	Uba52 (ENSMUSG00000090137) #22	Rex1bd (ENSMUSG00000058833) #23	Crlf1 (ENSMUSG00000007888) #24	Tmem59l (ENSMUSG00000035964) #25	Klhl26 (ENSMUSG00000055707) #26	Crtc1 (ENSMUSG00000003575) #27	Comp (ENSMUSG00000031849) #28	Upf1 (ENSMUSG00000058301) #29	Gdf1 (ENSMUSG00000109523) #30	Cers1 (ENSMUSG00000087408) #30	Cope (ENSMUSG00000055681) #32	Ddx49 (ENSMUSG00000057788) #33	Homer3 (ENSMUSG00000003573) #34	Sugp2 (ENSMUSG00000036054) #35	Armc6 (ENSMUSG00000002343) #36	Slc25a42 (ENSMUSG00000002346) #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00680000100785	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00530000064192	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Steppe mouse	MODERN SPECIES	2845	Ccdc157 (ENSMSIG00000002493)	Rnf215 (ENSMSIG00000002532)	ENSMSIG00000002570	Sec14l2 (ENSMSIG00000002585)	Mtfp1 (ENSMSIG00000002619)	ENSMSIG00000002649	Sec14l4 (ENSMSIG00000002672)	Gal3st1 (ENSMSIG00000002697)	Pes1 (ENSMSIG00000002758)	4930556J24Rik (ENSMSIG00000002859)	ENSMSIG00000002894	Tcn2 (ENSMSIG00000002908)	Slc35e4 (ENSMSIG00000002976)	Dusp18 (ENSMSIG00000002994)	ENSMSIG00000003003	ENSMSIG00000003026 #22	Osbp2 (ENSMSIG00000003063)	Morc2a (ENSMSIG00000003158)	ENSMSIG00000003275	ENSMSIG00000003292	Smtn (ENSMSIG00000003334)	Selenom (ENSMSIG00000003733)	Inpp5j (ENSMSIG00000003757)	Pla2g3 (ENSMSIG00000003865)	ENSMSIG00000003911	Rnf185 (ENSMSIG00000003936)	Limk2 (ENSMSIG00000004000)	Pik3ip1 (ENSMSIG00000004277)	Patz1 (ENSMSIG00000004323)	Drg1 (ENSMSIG00000004401)
spretus	DUPLICATION
spretus	MODERN SPECIES	17	Ifi30 (MGP_SPRETEiJ_G0032283) #8	Mpv17l2 (MGP_SPRETEiJ_G0032282) #9	Rab3a (MGP_SPRETEiJ_G0032281) #10	Pde4c (MGP_SPRETEiJ_G0032280) #11	Gm3336 (MGP_SPRETEiJ_G0032279)	MGP_SPRETEiJ_G0032278	Jund (MGP_SPRETEiJ_G0032277) #13	Lsm4 (MGP_SPRETEiJ_G0032276) #14	Pgpep1 (MGP_SPRETEiJ_G0032275) #15	Gdf15 (MGP_SPRETEiJ_G0032274) #16	Lrrc25 (MGP_SPRETEiJ_G0032273) #17	Ssbp4 (MGP_SPRETEiJ_G0032272) #18	Isyna1 (MGP_SPRETEiJ_G0032271) #19	Ell (MGP_SPRETEiJ_G0032270) #20	Fkbp8 (MGP_SPRETEiJ_G0032269) #21	MGP_SPRETEiJ_G0032268 #22	MGP_SPRETEiJ_G0032267 #22	Rex1bd (MGP_SPRETEiJ_G0032266) #23	Crlf1 (MGP_SPRETEiJ_G0032265) #24	Tmem59l (MGP_SPRETEiJ_G0032264) #25	Klhl26 (MGP_SPRETEiJ_G0032263) #26	Crtc1 (MGP_SPRETEiJ_G0032262) #27	Comp (MGP_SPRETEiJ_G0032261) #28	Upf1 (MGP_SPRETEiJ_G0032260) #29	MGP_SPRETEiJ_G0032259 #30	Cope (MGP_SPRETEiJ_G0032258) #32	Ddx49 (MGP_SPRETEiJ_G0032257) #33	Homer3 (MGP_SPRETEiJ_G0032256) #34	Sugp2 (MGP_SPRETEiJ_G0032255) #35	Armc6 (MGP_SPRETEiJ_G0032254) #36	Slc25a42 (MGP_SPRETEiJ_G0032253) #37
spretus	MODERN SPECIES	17	Mpv17l2 (MGP_SPRETEiJ_G0032282) #9	Rab3a (MGP_SPRETEiJ_G0032281) #10	Pde4c (MGP_SPRETEiJ_G0032280) #11	Gm3336 (MGP_SPRETEiJ_G0032279)	MGP_SPRETEiJ_G0032278	Jund (MGP_SPRETEiJ_G0032277) #13	Lsm4 (MGP_SPRETEiJ_G0032276) #14	Pgpep1 (MGP_SPRETEiJ_G0032275) #15	Gdf15 (MGP_SPRETEiJ_G0032274) #16	Lrrc25 (MGP_SPRETEiJ_G0032273) #17	Ssbp4 (MGP_SPRETEiJ_G0032272) #18	Isyna1 (MGP_SPRETEiJ_G0032271) #19	Ell (MGP_SPRETEiJ_G0032270) #20	Fkbp8 (MGP_SPRETEiJ_G0032269) #21	MGP_SPRETEiJ_G0032268 #22	MGP_SPRETEiJ_G0032267 #22	Rex1bd (MGP_SPRETEiJ_G0032266) #23	Crlf1 (MGP_SPRETEiJ_G0032265) #24	Tmem59l (MGP_SPRETEiJ_G0032264) #25	Klhl26 (MGP_SPRETEiJ_G0032263) #26	Crtc1 (MGP_SPRETEiJ_G0032262) #27	Comp (MGP_SPRETEiJ_G0032261) #28	Upf1 (MGP_SPRETEiJ_G0032260) #29	MGP_SPRETEiJ_G0032259 #30	Cope (MGP_SPRETEiJ_G0032258) #32	Ddx49 (MGP_SPRETEiJ_G0032257) #33	Homer3 (MGP_SPRETEiJ_G0032256) #34	Sugp2 (MGP_SPRETEiJ_G0032255) #35	Armc6 (MGP_SPRETEiJ_G0032254) #36	Slc25a42 (MGP_SPRETEiJ_G0032253) #37	Tmem161a (MGP_SPRETEiJ_G0032252)
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Prairie vole	MODERN SPECIES	164	Ifi30 (ENSMOCG00000001163) #8	Mpv17l2 (ENSMOCG00000009680) #9	Rab3a (ENSMOCG00000016750) #10	Pde4c (ENSMOCG00000015883) #11	Gm3336 (ENSMOCG00000017470)	Iqcn (ENSMOCG00000009272) #12	Jund (ENSMOCG00000005294) #13	Lsm4 (ENSMOCG00000020861) #14	Pgpep1 (ENSMOCG00000019971) #15	Gdf15 (ENSMOCG00000000065) #16	Lrrc25 (ENSMOCG00000000947) #17	Ssbp4 (ENSMOCG00000019818) #18	ENSMOCG00000013794 #19	Ell (ENSMOCG00000013489) #20	Fkbp8 (ENSMOCG00000015712) #21	Uba52 (ENSMOCG00000015677) #22	Rex1bd (ENSMOCG00000014306) #23	Crlf1 (ENSMOCG00000007746) #24	Tmem59l (ENSMOCG00000010649) #25	Klhl26 (ENSMOCG00000017635) #26	Crtc1 (ENSMOCG00000005553) #27	Comp (ENSMOCG00000004567) #28	Upf1 (ENSMOCG00000005699) #29	ENSMOCG00000000275 #30	ENSMOCG00000004861 #31	Cope (ENSMOCG00000014940) #32	Ddx49 (ENSMOCG00000018690) #33	Homer3 (ENSMOCG00000013590) #34	Sugp2 (ENSMOCG00000009704) #35	Armc6 (ENSMOCG00000014288) #36	Slc25a42 (ENSMOCG00000012570) #37
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00390000010450 #8	ENSGT00940000160620 #9	ENSGT00940000158959.b #10	ENSGT00940000162285 #11	ENSGT01030000234883	ENSGT00940000156018.A #12	ENSGT00940000162806 #13	ENSGT00610000086173 #14	ENSGT00390000015368.a.a #15	ENSGT00940000161872 #16	ENSGT00390000004001 #17	ENSGT00950000183049.C #18	ENSGT00390000018395 #19	ENSGT00940000155914 #20	ENSGT00940000156705 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Golden Hamster	MODERN SPECIES	831	Ifi30 (ENSMAUG00000016704) #8	Mpv17l2 (ENSMAUG00000001144) #9	Rab3a (ENSMAUG00000005339) #10	Pde4c (ENSMAUG00000016880) #11	Gm3336 (ENSMAUG00000001502)	Iqcn (ENSMAUG00000021279) #12	Jund (ENSMAUG00000019892) #13	ENSMAUG00000018936	Pgpep1 (ENSMAUG00000020690) #15	Gdf15 (ENSMAUG00000014895) #16	Lrrc25 (ENSMAUG00000018197) #17	Ssbp4 (ENSMAUG00000011895) #18	Isyna1 (ENSMAUG00000021573) #19	Ell (ENSMAUG00000014805) #20	Fkbp8 (ENSMAUG00000010945) #21	Uba52 (ENSMAUG00000002775) #22	Rex1bd (ENSMAUG00000015830) #23	Crlf1 (ENSMAUG00000021052) #24	Tmem59l (ENSMAUG00000006146) #25	Klhl26 (ENSMAUG00000021352) #26	Crtc1 (ENSMAUG00000019225) #27	Comp (ENSMAUG00000010602) #28	Upf1 (ENSMAUG00000011398) #29	ENSMAUG00000012872 #30	ENSMAUG00000011350 #31	Cope (ENSMAUG00000016322) #32	Ddx49 (ENSMAUG00000010235) #33	Homer3 (ENSMAUG00000014150) #34	Sugp2 (ENSMAUG00000011371) #35	Armc6 (ENSMAUG00000011324) #36	Slc25a42 (ENSMAUG00000018082) #37
Chinese hamster chok1gshd	MODERN SPECIES	184	Ifi30 (ENSCGRG00001020539) #8	Mpv17l2 (ENSCGRG00001017497) #9	Rab3a (ENSCGRG00001021376) #10	Pde4c (ENSCGRG00001018842) #11	Gm3336 (ENSCGRG00001023238)	Iqcn (ENSCGRG00001004411) #12	Jund (ENSCGRG00001010573) #13	Lsm4 (ENSCGRG00001014436) #14	Pgpep1 (ENSCGRG00001016516) #15	Gdf15 (ENSCGRG00001016811) #16	Lrrc25 (ENSCGRG00001015091) #17	Ssbp4 (ENSCGRG00001016735) #18	Isyna1 (ENSCGRG00001022885) #19	Ell (ENSCGRG00001009009) #20	Fkbp8 (ENSCGRG00001012652) #21	Uba52 (ENSCGRG00001018293) #22	Rex1bd (ENSCGRG00001023832) #23	Crlf1 (ENSCGRG00001017905) #24	Tmem59l (ENSCGRG00001018799) #25	Klhl26 (ENSCGRG00001020014) #26	Crtc1 (ENSCGRG00001002202) #27	Comp (ENSCGRG00001009171) #28	Upf1 (ENSCGRG00001021067) #29	ENSCGRG00001006921 #30	ENSCGRG00001019774 #31	COPE (ENSCGRG00001024248) #32	Ddx49 (ENSCGRG00001009467) #33	Homer3 (ENSCGRG00001014952) #34	Sugp2 (ENSCGRG00001018264) #35	Armc6 (ENSCGRG00001019296) #36	Slc25a42 (ENSCGRG00001022045) #37